Query 041277
Match_columns 1133
No_of_seqs 970 out of 4649
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:33:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0055 Multidrug/pheromone ex 100.0 7E-189 2E-193 1701.8 117.4 1102 18-1133 12-1118(1228)
2 PTZ00265 multidrug resistance 100.0 2E-151 5E-156 1483.3 139.6 1101 17-1133 43-1350(1466)
3 KOG0054 Multidrug resistance-a 100.0 2E-142 5E-147 1329.2 112.4 1031 47-1133 217-1267(1381)
4 PLN03130 ABC transporter C fam 100.0 1E-133 3E-138 1327.9 132.5 984 105-1133 366-1366(1622)
5 PLN03232 ABC transporter C fam 100.0 2E-132 5E-137 1318.1 129.2 1040 38-1133 305-1363(1495)
6 TIGR00957 MRP_assoc_pro multi 100.0 1E-128 3E-133 1284.5 133.7 1052 45-1133 328-1413(1522)
7 PTZ00243 ABC transporter; Prov 100.0 8E-123 2E-127 1223.9 131.0 1056 38-1133 248-1437(1560)
8 TIGR01271 CFTR_protein cystic 100.0 1E-119 3E-124 1194.4 130.5 1042 51-1133 97-1345(1490)
9 KOG0058 Peptide exporter, ABC 100.0 2E-110 5E-115 964.1 67.3 574 20-603 134-708 (716)
10 KOG0055 Multidrug/pheromone ex 100.0 9E-106 2E-110 976.0 72.0 578 17-600 648-1226(1228)
11 COG2274 SunT ABC-type bacterio 100.0 6.1E-93 1.3E-97 858.8 71.7 568 17-599 138-708 (709)
12 PRK11174 cysteine/glutathione 100.0 1.3E-87 2.8E-92 829.3 74.4 569 19-601 8-586 (588)
13 PTZ00265 multidrug resistance 100.0 2.2E-87 4.7E-92 879.5 75.8 571 20-599 812-1465(1466)
14 COG1132 MdlB ABC-type multidru 100.0 7.3E-86 1.6E-90 808.8 74.4 561 21-600 4-565 (567)
15 TIGR00958 3a01208 Conjugate Tr 100.0 5.6E-86 1.2E-90 825.1 74.0 564 18-595 146-710 (711)
16 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.2E-84 4.7E-89 812.5 75.9 563 19-599 121-685 (686)
17 TIGR01193 bacteriocin_ABC ABC- 100.0 4.7E-84 1E-88 812.2 74.4 564 19-597 142-707 (708)
18 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 8.1E-84 1.8E-88 811.2 73.9 564 19-596 140-709 (710)
19 PRK11160 cysteine/glutathione 100.0 1.6E-83 3.4E-88 786.0 74.0 566 21-597 4-572 (574)
20 TIGR03375 type_I_sec_LssB type 100.0 6.5E-83 1.4E-87 800.1 73.9 555 19-586 133-688 (694)
21 COG4988 CydD ABC-type transpor 100.0 1.1E-82 2.5E-87 722.5 68.6 549 41-601 7-557 (559)
22 PRK11176 lipid transporter ATP 100.0 6.6E-82 1.4E-86 778.3 75.2 566 21-600 13-580 (582)
23 KOG0056 Heavy metal exporter H 100.0 3E-85 6.5E-90 708.7 36.9 555 38-603 219-778 (790)
24 TIGR01846 type_I_sec_HlyB type 100.0 1.4E-81 3.1E-86 787.1 75.7 567 19-599 125-692 (694)
25 PRK10790 putative multidrug tr 100.0 9.1E-81 2E-85 768.3 75.1 565 21-601 11-577 (592)
26 TIGR02203 MsbA_lipidA lipid A 100.0 1.9E-80 4.2E-85 764.6 74.8 564 22-599 3-568 (571)
27 TIGR01192 chvA glucan exporter 100.0 6.1E-80 1.3E-84 755.2 76.6 565 21-601 7-572 (585)
28 PRK13657 cyclic beta-1,2-gluca 100.0 4.5E-80 9.7E-85 760.9 75.8 568 19-602 5-573 (588)
29 KOG0057 Mitochondrial Fe/S clu 100.0 4.5E-81 9.9E-86 695.5 59.0 552 39-601 35-588 (591)
30 TIGR02868 CydC thiol reductant 100.0 1.5E-80 3.3E-85 756.8 69.0 524 23-558 3-529 (529)
31 KOG0058 Peptide exporter, ABC 100.0 8.7E-82 1.9E-86 727.1 53.9 464 663-1133 133-596 (716)
32 PRK10789 putative multidrug tr 100.0 1.1E-79 2.3E-84 752.2 71.7 538 52-601 13-552 (569)
33 TIGR02204 MsbA_rel ABC transpo 100.0 2.9E-79 6.4E-84 754.4 75.2 569 21-599 6-575 (576)
34 TIGR00957 MRP_assoc_pro multi 100.0 8.9E-79 1.9E-83 808.1 72.8 506 85-598 1010-1519(1522)
35 COG4987 CydC ABC-type transpor 100.0 4.8E-78 1.1E-82 671.2 64.9 553 33-597 15-571 (573)
36 TIGR02857 CydD thiol reductant 100.0 7.4E-78 1.6E-82 733.1 70.4 523 36-570 5-529 (529)
37 PLN03130 ABC transporter C fam 100.0 1.1E-77 2.3E-82 795.4 72.8 510 82-600 955-1475(1622)
38 TIGR01842 type_I_sec_PrtD type 100.0 3.3E-76 7.2E-81 719.1 71.8 530 38-586 10-542 (544)
39 PTZ00243 ABC transporter; Prov 100.0 1.3E-76 2.8E-81 784.4 72.6 508 89-600 1007-1547(1560)
40 PLN03232 ABC transporter C fam 100.0 2.4E-76 5.3E-81 783.8 71.2 513 82-600 952-1472(1495)
41 COG5265 ATM1 ABC-type transpor 100.0 3.7E-77 7.9E-82 642.4 41.0 490 102-597 4-496 (497)
42 KOG0054 Multidrug resistance-a 100.0 2.7E-75 5.8E-80 728.1 59.7 512 81-598 859-1374(1381)
43 TIGR01194 cyc_pep_trnsptr cycl 100.0 6.7E-73 1.4E-77 689.6 67.1 535 18-578 2-551 (555)
44 TIGR01271 CFTR_protein cystic 100.0 5.7E-72 1.2E-76 740.6 72.4 501 91-602 936-1455(1490)
45 COG4618 ArpD ABC-type protease 100.0 5.9E-70 1.3E-74 599.9 52.4 534 35-586 25-560 (580)
46 PRK10522 multidrug transporter 100.0 5.1E-67 1.1E-71 638.2 67.0 508 37-578 16-530 (547)
47 COG2274 SunT ABC-type bacterio 100.0 3.5E-65 7.5E-70 617.4 58.2 460 665-1133 142-601 (709)
48 TIGR00954 3a01203 Peroxysomal 100.0 8.1E-65 1.8E-69 626.0 61.4 531 19-572 77-653 (659)
49 TIGR02868 CydC thiol reductant 100.0 5.1E-62 1.1E-66 594.1 58.5 456 667-1133 3-462 (529)
50 TIGR00958 3a01208 Conjugate Tr 100.0 2.5E-61 5.5E-66 603.1 60.7 463 663-1133 147-609 (711)
51 COG1132 MdlB ABC-type multidru 100.0 2.7E-60 5.9E-65 582.7 59.8 454 665-1133 4-457 (567)
52 PRK11174 cysteine/glutathione 100.0 4E-60 8.6E-65 584.8 59.5 460 664-1133 9-477 (588)
53 TIGR01193 bacteriocin_ABC ABC- 100.0 2E-59 4.3E-64 589.2 59.1 461 664-1133 143-603 (708)
54 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4E-59 8.7E-64 584.4 60.4 457 665-1133 123-580 (686)
55 PRK11160 cysteine/glutathione 100.0 1.3E-58 2.9E-63 566.3 59.7 461 665-1133 4-467 (574)
56 TIGR03375 type_I_sec_LssB type 100.0 1.4E-58 3E-63 580.4 59.9 459 665-1133 135-593 (694)
57 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.8E-58 4E-63 581.3 58.8 462 664-1133 141-607 (710)
58 TIGR02857 CydD thiol reductant 100.0 1.3E-57 2.9E-62 555.3 59.4 449 676-1133 2-450 (529)
59 TIGR01846 type_I_sec_HlyB type 100.0 2.7E-57 5.8E-62 568.1 60.4 459 665-1133 127-585 (694)
60 PRK11176 lipid transporter ATP 100.0 5.7E-57 1.2E-61 556.5 60.4 460 665-1133 13-472 (582)
61 TIGR02203 MsbA_lipidA lipid A 100.0 2.4E-56 5.2E-61 550.5 60.1 458 667-1133 4-461 (571)
62 PRK10790 putative multidrug tr 100.0 2.7E-56 6E-61 550.6 59.4 458 664-1133 10-468 (592)
63 COG4988 CydD ABC-type transpor 100.0 3.7E-55 7.9E-60 498.1 56.0 443 682-1133 5-448 (559)
64 TIGR02204 MsbA_rel ABC transpo 100.0 3.5E-55 7.5E-60 540.4 60.6 463 665-1133 6-468 (576)
65 TIGR01192 chvA glucan exporter 100.0 4E-55 8.6E-60 536.2 60.4 457 665-1133 7-463 (585)
66 KOG0056 Heavy metal exporter H 100.0 2.9E-58 6.3E-63 499.1 27.8 393 734-1133 273-666 (790)
67 PRK13657 cyclic beta-1,2-gluca 100.0 8.9E-55 1.9E-59 536.2 60.1 458 664-1133 6-463 (588)
68 PRK10789 putative multidrug tr 100.0 6.9E-55 1.5E-59 533.5 56.7 437 688-1133 6-443 (569)
69 KOG0057 Mitochondrial Fe/S clu 100.0 5.4E-54 1.2E-58 479.1 46.5 436 689-1133 42-479 (591)
70 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.4E-53 3E-58 520.0 54.1 452 664-1133 4-467 (555)
71 TIGR01842 type_I_sec_PrtD type 100.0 9.7E-53 2.1E-57 512.9 58.5 443 674-1133 3-446 (544)
72 COG4987 CydC ABC-type transpor 100.0 2.5E-52 5.3E-57 465.7 52.2 398 728-1133 66-466 (573)
73 COG1123 ATPase components of v 100.0 4.5E-53 9.7E-58 484.1 32.5 226 360-594 5-252 (539)
74 COG1126 GlnQ ABC-type polar am 100.0 6.6E-53 1.4E-57 420.0 22.0 216 360-589 2-228 (240)
75 COG5265 ATM1 ABC-type transpor 100.0 9E-52 1.9E-56 446.1 31.5 387 741-1133 3-391 (497)
76 PRK13549 xylose transporter AT 100.0 1.4E-51 3.1E-56 497.8 34.7 211 360-580 5-226 (506)
77 PRK10261 glutathione transport 100.0 1.6E-51 3.5E-56 506.2 34.3 219 360-586 12-258 (623)
78 PRK09700 D-allose transporter 100.0 1.4E-51 3.1E-56 498.7 32.7 213 360-582 5-230 (510)
79 TIGR01257 rim_protein retinal- 100.0 4E-49 8.7E-54 514.4 57.5 215 359-586 927-1149(2272)
80 PRK15134 microcin C ABC transp 100.0 3.2E-51 7E-56 497.4 33.4 217 360-584 5-244 (529)
81 TIGR00956 3a01205 Pleiotropic 100.0 7.1E-50 1.5E-54 525.6 44.6 202 376-585 74-299 (1394)
82 PRK10762 D-ribose transporter 100.0 1.5E-50 3.3E-55 488.2 33.0 211 360-580 4-224 (501)
83 TIGR02633 xylG D-xylose ABC tr 100.0 5.2E-50 1.1E-54 484.3 34.9 209 361-579 2-223 (500)
84 PRK10938 putative molybdenum t 100.0 6.1E-50 1.3E-54 482.5 34.9 208 361-584 4-222 (490)
85 TIGR03269 met_CoM_red_A2 methy 100.0 2.2E-50 4.8E-55 489.5 30.5 205 361-579 1-251 (520)
86 PRK15439 autoinducer 2 ABC tra 100.0 1.7E-49 3.8E-54 479.1 35.6 211 360-584 11-227 (510)
87 PRK11288 araG L-arabinose tran 100.0 1.1E-49 2.3E-54 480.9 33.0 208 360-577 4-220 (501)
88 COG1125 OpuBA ABC-type proline 100.0 7.8E-51 1.7E-55 412.2 18.3 218 361-592 2-231 (309)
89 COG1135 AbcC ABC-type metal io 100.0 2.8E-50 6E-55 421.8 20.9 218 361-589 2-234 (339)
90 cd03289 ABCC_CFTR2 The CFTR su 100.0 3E-49 6.6E-54 434.7 27.2 237 359-599 1-237 (275)
91 PRK10982 galactose/methyl gala 100.0 6.4E-49 1.4E-53 473.3 32.4 209 363-581 1-218 (491)
92 COG1117 PstB ABC-type phosphat 100.0 9.4E-50 2E-54 394.7 19.1 219 359-587 6-238 (253)
93 PRK15064 ABC transporter ATP-b 100.0 7.8E-48 1.7E-52 467.9 39.6 208 361-586 2-242 (530)
94 PRK10522 multidrug transporter 100.0 6.4E-46 1.4E-50 452.8 52.3 433 671-1130 7-443 (547)
95 PRK11819 putative ABC transpor 100.0 5.8E-47 1.3E-51 461.4 39.2 208 360-585 6-249 (556)
96 COG4172 ABC-type uncharacteriz 100.0 1.8E-47 3.9E-52 409.3 29.4 229 360-596 6-257 (534)
97 TIGR00954 3a01203 Peroxysomal 100.0 1.9E-45 4.2E-50 454.0 51.9 453 664-1133 78-575 (659)
98 PLN03140 ABC transporter G fam 100.0 2E-46 4.4E-51 490.0 44.6 207 376-585 178-426 (1470)
99 COG4618 ArpD ABC-type protease 100.0 2.3E-45 4.9E-50 405.6 44.0 439 679-1133 25-464 (580)
100 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.3E-46 4.9E-51 456.3 38.9 208 360-585 4-247 (552)
101 COG4615 PvdE ABC-type sideroph 100.0 1.9E-44 4E-49 384.4 47.2 469 87-578 55-529 (546)
102 COG1127 Ttg2A ABC-type transpo 100.0 1.7E-47 3.7E-52 387.3 21.4 225 359-597 7-246 (263)
103 COG1120 FepC ABC-type cobalami 100.0 2.5E-47 5.3E-52 403.0 21.5 213 360-586 2-228 (258)
104 PRK14257 phosphate ABC transpo 100.0 9.5E-47 2.1E-51 425.8 26.0 222 358-587 78-314 (329)
105 COG2884 FtsE Predicted ATPase 100.0 6.2E-47 1.3E-51 368.0 18.1 208 361-581 2-221 (223)
106 COG3839 MalK ABC-type sugar tr 100.0 1.4E-46 3.1E-51 412.5 22.3 216 360-591 3-228 (338)
107 COG1116 TauB ABC-type nitrate/ 100.0 1.4E-46 3E-51 388.2 20.5 195 360-573 3-207 (248)
108 cd03252 ABCC_Hemolysin The ABC 100.0 6E-46 1.3E-50 405.0 26.9 235 361-597 1-235 (237)
109 COG3840 ThiQ ABC-type thiamine 100.0 3E-46 6.5E-51 359.6 19.4 209 361-587 2-220 (231)
110 COG3638 ABC-type phosphate/pho 100.0 2.9E-46 6.4E-51 377.4 19.9 213 360-585 3-236 (258)
111 COG1136 SalX ABC-type antimicr 100.0 1E-45 2.2E-50 382.9 24.3 205 361-576 2-221 (226)
112 COG3842 PotA ABC-type spermidi 100.0 1.5E-46 3.2E-51 414.6 18.8 218 359-592 4-232 (352)
113 cd03288 ABCC_SUR2 The SUR doma 100.0 5.6E-45 1.2E-49 401.2 27.8 240 357-598 16-255 (257)
114 COG1124 DppF ABC-type dipeptid 100.0 2.2E-45 4.7E-50 374.7 20.1 226 360-596 3-241 (252)
115 PRK10636 putative ABC transpor 100.0 1.2E-43 2.5E-48 436.5 39.5 204 361-582 2-232 (638)
116 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.8E-45 1E-49 383.1 22.4 209 360-586 4-227 (254)
117 cd03253 ABCC_ATM1_transporter 100.0 1.5E-44 3.3E-49 393.8 26.8 234 361-597 1-234 (236)
118 TIGR02314 ABC_MetN D-methionin 100.0 6.1E-45 1.3E-49 411.2 24.2 225 361-596 2-241 (343)
119 cd03251 ABCC_MsbA MsbA is an e 100.0 1.5E-44 3.2E-49 393.4 26.1 225 361-586 1-225 (234)
120 cd03254 ABCC_Glucan_exporter_l 100.0 1.8E-44 3.8E-49 391.5 26.1 226 359-586 1-226 (229)
121 COG1122 CbiO ABC-type cobalt t 100.0 5.1E-45 1.1E-49 386.9 21.2 214 360-586 3-228 (235)
122 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.1E-44 4.4E-49 393.2 26.6 226 361-586 1-226 (238)
123 cd03244 ABCC_MRP_domain2 Domai 100.0 4.3E-44 9.4E-49 386.2 26.8 220 359-580 1-220 (221)
124 PRK11147 ABC transporter ATPas 100.0 3.9E-43 8.4E-48 433.4 38.9 204 361-584 4-241 (635)
125 COG1118 CysA ABC-type sulfate/ 100.0 6.8E-45 1.5E-49 380.0 17.8 214 360-589 2-230 (345)
126 cd03245 ABCC_bacteriocin_expor 100.0 1.2E-43 2.5E-48 382.5 26.9 219 360-579 2-220 (220)
127 cd03261 ABC_Org_Solvent_Resist 100.0 1E-43 2.3E-48 386.6 22.6 212 361-586 1-226 (235)
128 PRK11650 ugpC glycerol-3-phosp 100.0 2.2E-43 4.8E-48 402.3 25.0 218 360-592 3-230 (356)
129 PRK13631 cbiO cobalt transport 100.0 5.5E-43 1.2E-47 394.2 27.0 221 359-586 20-265 (320)
130 PRK11432 fbpC ferric transport 100.0 2E-43 4.4E-48 401.2 23.4 215 360-590 6-230 (351)
131 cd03248 ABCC_TAP TAP, the Tran 100.0 4.1E-43 8.8E-48 379.8 24.6 219 357-575 8-226 (226)
132 cd03260 ABC_PstB_phosphate_tra 100.0 2.7E-43 5.8E-48 381.5 23.0 212 361-584 1-227 (227)
133 PLN03073 ABC transporter F fam 100.0 3.2E-42 7E-47 423.8 34.6 218 359-583 176-428 (718)
134 COG4178 ABC-type uncharacteriz 100.0 1.3E-39 2.7E-44 378.1 54.0 464 83-570 89-586 (604)
135 TIGR01186 proV glycine betaine 100.0 2E-43 4.4E-48 400.7 21.8 207 376-593 6-226 (363)
136 TIGR03265 PhnT2 putative 2-ami 100.0 2.9E-43 6.3E-48 400.8 22.5 217 360-592 4-230 (353)
137 PRK13650 cbiO cobalt transport 100.0 5.8E-43 1.3E-47 389.1 24.2 216 360-586 4-229 (279)
138 COG4175 ProV ABC-type proline/ 100.0 1.8E-43 3.9E-48 368.8 17.3 225 360-595 4-263 (386)
139 PRK09452 potA putrescine/sperm 100.0 9.8E-43 2.1E-47 398.1 24.2 218 359-592 13-240 (375)
140 PRK14250 phosphate ABC transpo 100.0 1.8E-42 3.9E-47 377.8 24.8 223 360-595 3-230 (241)
141 PRK14269 phosphate ABC transpo 100.0 1.2E-42 2.7E-47 380.5 23.6 217 360-586 2-230 (246)
142 PRK11153 metN DL-methionine tr 100.0 1.2E-42 2.7E-47 396.1 24.4 216 361-587 2-231 (343)
143 PRK10851 sulfate/thiosulfate t 100.0 1.1E-42 2.5E-47 396.0 23.4 217 360-592 2-232 (353)
144 TIGR03258 PhnT 2-aminoethylpho 100.0 8.9E-43 1.9E-47 397.1 22.3 215 359-589 4-231 (362)
145 PRK13409 putative ATPase RIL; 100.0 1.7E-42 3.6E-47 419.5 25.6 192 364-572 77-286 (590)
146 PRK13647 cbiO cobalt transport 100.0 2.3E-42 4.9E-47 383.3 24.4 213 360-585 4-226 (274)
147 PRK09536 btuD corrinoid ABC tr 100.0 1.8E-42 4E-47 397.6 24.3 213 360-586 3-228 (402)
148 TIGR00972 3a0107s01c2 phosphat 100.0 2.8E-42 6.1E-47 378.1 24.1 217 361-587 2-233 (247)
149 COG1129 MglA ABC-type sugar tr 100.0 2.1E-41 4.6E-46 385.8 31.9 208 360-579 8-227 (500)
150 PRK13637 cbiO cobalt transport 100.0 2.1E-42 4.5E-47 385.9 23.3 217 361-586 3-234 (287)
151 PRK13643 cbiO cobalt transport 100.0 2.7E-42 5.9E-47 385.1 24.2 216 361-586 2-233 (288)
152 cd03296 ABC_CysA_sulfate_impor 100.0 3E-42 6.5E-47 376.0 23.9 210 361-586 3-226 (239)
153 TIGR00960 3a0501s02 Type II (G 100.0 1.5E-42 3.2E-47 372.7 21.0 203 361-575 2-216 (216)
154 COG3845 ABC-type uncharacteriz 100.0 7.1E-41 1.5E-45 371.9 34.8 208 360-577 4-220 (501)
155 cd03219 ABC_Mj1267_LivG_branch 100.0 2E-42 4.3E-47 377.2 21.8 221 361-586 1-232 (236)
156 cd03256 ABC_PhnC_transporter A 100.0 2.8E-42 6.1E-47 377.4 23.0 212 361-585 1-233 (241)
157 TIGR02315 ABC_phnC phosphonate 100.0 3.8E-42 8.2E-47 376.7 23.4 212 361-585 2-234 (243)
158 PRK13635 cbiO cobalt transport 100.0 4.9E-42 1.1E-46 381.3 24.4 215 360-586 5-229 (279)
159 PRK14242 phosphate transporter 100.0 4E-42 8.7E-47 378.5 23.5 217 360-586 6-237 (253)
160 cd03259 ABC_Carb_Solutes_like 100.0 1.9E-42 4.1E-47 371.0 20.2 203 361-579 1-213 (213)
161 PRK14273 phosphate ABC transpo 100.0 7.7E-42 1.7E-46 376.3 25.2 223 360-592 7-244 (254)
162 cd03263 ABC_subfamily_A The AB 100.0 3.4E-42 7.4E-47 371.1 21.9 211 361-584 1-219 (220)
163 PRK11000 maltose/maltodextrin 100.0 3.6E-42 7.7E-47 395.3 23.3 213 360-588 3-225 (369)
164 PRK13646 cbiO cobalt transport 100.0 4.3E-42 9.3E-47 383.5 22.9 219 361-586 3-235 (286)
165 PRK10744 pstB phosphate transp 100.0 8.6E-42 1.9E-46 376.8 24.9 220 358-587 11-245 (260)
166 PRK13634 cbiO cobalt transport 100.0 4E-42 8.6E-47 384.2 22.5 216 361-586 3-235 (290)
167 PRK15079 oligopeptide ABC tran 100.0 5.6E-42 1.2E-46 387.3 23.9 226 360-595 8-260 (331)
168 cd03258 ABC_MetN_methionine_tr 100.0 5.4E-42 1.2E-46 372.8 22.9 215 361-586 2-230 (233)
169 PRK13651 cobalt transporter AT 100.0 6.1E-42 1.3E-46 383.5 23.9 215 361-586 3-254 (305)
170 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.4E-41 3.1E-46 362.3 25.7 203 359-581 5-207 (207)
171 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.5E-42 7.5E-47 381.1 21.5 218 362-593 26-257 (269)
172 PRK14235 phosphate transporter 100.0 7.8E-42 1.7E-46 378.1 24.0 219 358-586 17-251 (267)
173 cd03226 ABC_cobalt_CbiO_domain 100.0 3.8E-42 8.3E-47 366.1 20.1 199 362-576 1-205 (205)
174 PRK10070 glycine betaine trans 100.0 5.5E-42 1.2E-46 393.4 22.8 204 378-592 43-260 (400)
175 cd03224 ABC_TM1139_LivF_branch 100.0 8.6E-42 1.9E-46 368.7 22.8 216 361-585 1-220 (222)
176 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6.5E-42 1.4E-46 374.0 22.1 217 361-586 1-225 (242)
177 cd03264 ABC_drug_resistance_li 100.0 6.9E-42 1.5E-46 366.1 21.7 203 361-579 1-211 (211)
178 cd03265 ABC_DrrA DrrA is the A 100.0 8.2E-42 1.8E-46 367.8 22.3 209 361-584 1-219 (220)
179 PRK13642 cbiO cobalt transport 100.0 1.4E-41 2.9E-46 378.0 24.6 216 360-586 4-229 (277)
180 PRK11607 potG putrescine trans 100.0 7.2E-42 1.6E-46 391.8 22.9 218 359-592 18-245 (377)
181 COG0410 LivF ABC-type branched 100.0 9.3E-42 2E-46 345.9 21.0 220 360-587 3-227 (237)
182 cd03291 ABCC_CFTR1 The CFTR su 100.0 5.3E-41 1.1E-45 370.8 28.6 240 332-595 15-255 (282)
183 PRK13636 cbiO cobalt transport 100.0 1.4E-41 3E-46 378.8 24.2 214 360-586 5-231 (283)
184 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6.3E-42 1.4E-46 368.5 20.6 204 361-575 1-218 (218)
185 PRK11831 putative ABC transpor 100.0 1.2E-41 2.5E-46 377.2 23.2 223 360-596 7-243 (269)
186 PRK14247 phosphate ABC transpo 100.0 1.4E-41 3.1E-46 373.4 23.7 218 360-587 3-235 (250)
187 cd03268 ABC_BcrA_bacitracin_re 100.0 1E-41 2.3E-46 363.9 21.9 203 361-579 1-208 (208)
188 TIGR03415 ABC_choXWV_ATP choli 100.0 6.5E-42 1.4E-46 389.8 21.6 207 377-594 38-262 (382)
189 PRK13537 nodulation ABC transp 100.0 8.4E-42 1.8E-46 383.4 22.2 212 360-586 7-227 (306)
190 COG0488 Uup ATPase components 100.0 3.7E-40 8.1E-45 387.3 37.0 199 360-577 3-230 (530)
191 PRK11629 lolD lipoprotein tran 100.0 1.2E-41 2.6E-46 369.7 22.7 210 360-580 5-228 (233)
192 PRK14267 phosphate ABC transpo 100.0 1.1E-41 2.3E-46 375.2 22.4 217 360-586 4-237 (253)
193 PRK14274 phosphate ABC transpo 100.0 2.2E-41 4.8E-46 373.5 24.6 218 360-587 12-244 (259)
194 TIGR03005 ectoine_ehuA ectoine 100.0 1.6E-41 3.5E-46 373.3 23.3 214 361-588 1-238 (252)
195 cd03266 ABC_NatA_sodium_export 100.0 1.6E-41 3.5E-46 365.4 22.8 207 361-579 2-218 (218)
196 PRK10575 iron-hydroxamate tran 100.0 1.7E-41 3.6E-46 375.4 22.9 213 360-586 11-237 (265)
197 cd03218 ABC_YhbG The ABC trans 100.0 1.6E-41 3.4E-46 369.1 22.3 216 361-586 1-222 (232)
198 PRK11231 fecE iron-dicitrate t 100.0 2.1E-41 4.6E-46 372.8 23.4 220 361-596 3-235 (255)
199 PRK11308 dppF dipeptide transp 100.0 2.7E-41 5.8E-46 381.6 24.6 226 360-596 5-254 (327)
200 PRK11247 ssuB aliphatic sulfon 100.0 3E-41 6.4E-46 369.3 23.9 205 359-582 11-219 (257)
201 PRK13644 cbiO cobalt transport 100.0 3.5E-41 7.6E-46 373.7 24.8 213 361-586 2-224 (274)
202 PRK14240 phosphate transporter 100.0 3.4E-41 7.3E-46 370.5 24.3 218 359-586 2-234 (250)
203 cd03301 ABC_MalK_N The N-termi 100.0 1.6E-41 3.4E-46 364.1 21.1 203 361-579 1-213 (213)
204 PRK13633 cobalt transporter AT 100.0 2.6E-41 5.7E-46 376.3 23.7 216 360-586 4-233 (280)
205 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.2E-41 2.6E-46 366.5 20.2 206 361-582 1-219 (220)
206 PRK13640 cbiO cobalt transport 100.0 3.8E-41 8.2E-46 375.1 24.9 215 360-586 5-232 (282)
207 TIGR02769 nickel_nikE nickel i 100.0 2.7E-41 5.8E-46 373.7 23.5 225 361-595 3-249 (265)
208 PRK14259 phosphate ABC transpo 100.0 3.5E-41 7.5E-46 373.1 24.4 219 359-587 12-254 (269)
209 cd03250 ABCC_MRP_domain1 Domai 100.0 3.9E-41 8.4E-46 358.1 23.8 200 361-574 1-204 (204)
210 PRK09493 glnQ glutamine ABC tr 100.0 2.3E-41 5E-46 369.4 22.7 212 361-586 2-225 (240)
211 PRK13632 cbiO cobalt transport 100.0 3.3E-41 7.2E-46 373.9 24.1 215 360-586 7-231 (271)
212 PRK13652 cbiO cobalt transport 100.0 3.3E-41 7.1E-46 375.0 24.1 213 361-586 4-227 (277)
213 COG4555 NatA ABC-type Na+ tran 100.0 9.5E-42 2.1E-46 334.4 17.3 212 361-586 2-222 (245)
214 PRK11022 dppD dipeptide transp 100.0 3.4E-41 7.4E-46 381.1 24.3 228 361-596 4-253 (326)
215 PRK14268 phosphate ABC transpo 100.0 3.4E-41 7.3E-46 371.6 23.5 219 359-587 11-243 (258)
216 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.1E-41 6.6E-46 367.3 22.8 215 361-586 2-221 (236)
217 TIGR02211 LolD_lipo_ex lipopro 100.0 3.1E-41 6.7E-46 363.9 22.7 205 361-576 2-220 (221)
218 PRK14236 phosphate transporter 100.0 3.9E-41 8.5E-46 373.6 24.1 219 358-586 23-256 (272)
219 PRK14245 phosphate ABC transpo 100.0 2.4E-41 5.3E-46 371.4 22.2 218 360-587 3-235 (250)
220 PRK14248 phosphate ABC transpo 100.0 3.6E-41 7.8E-46 373.6 23.7 218 360-587 21-253 (268)
221 TIGR03411 urea_trans_UrtD urea 100.0 3.1E-41 6.7E-46 369.1 22.4 221 361-586 3-231 (242)
222 PRK11124 artP arginine transpo 100.0 4.4E-41 9.4E-46 367.7 23.5 212 361-586 3-230 (242)
223 PRK14237 phosphate transporter 100.0 5.9E-41 1.3E-45 371.1 24.5 219 358-586 18-251 (267)
224 PRK13641 cbiO cobalt transport 100.0 4.8E-41 1E-45 375.3 23.9 217 360-586 2-234 (287)
225 PRK13548 hmuV hemin importer A 100.0 6.6E-41 1.4E-45 368.8 24.6 212 361-586 3-230 (258)
226 PRK11264 putative amino-acid A 100.0 3.9E-41 8.4E-46 370.2 22.6 216 361-586 4-233 (250)
227 PRK14239 phosphate transporter 100.0 4.3E-41 9.3E-46 370.3 23.0 218 360-587 5-237 (252)
228 PRK11614 livF leucine/isoleuci 100.0 7.2E-41 1.6E-45 364.8 24.5 218 360-586 5-226 (237)
229 PRK14251 phosphate ABC transpo 100.0 4.6E-41 1E-45 369.7 23.1 217 360-586 4-235 (251)
230 PRK13638 cbiO cobalt transport 100.0 4.2E-41 9.1E-46 373.4 22.9 212 361-586 2-225 (271)
231 TIGR03410 urea_trans_UrtE urea 100.0 5.1E-41 1.1E-45 364.4 23.1 212 361-585 1-220 (230)
232 PRK14256 phosphate ABC transpo 100.0 6.3E-41 1.4E-45 368.6 23.9 221 359-589 3-239 (252)
233 PRK14244 phosphate ABC transpo 100.0 2.6E-41 5.6E-46 371.5 20.8 217 361-587 6-238 (251)
234 TIGR01288 nodI ATP-binding ABC 100.0 3.9E-41 8.3E-46 379.1 22.5 212 360-586 4-224 (303)
235 TIGR02673 FtsE cell division A 100.0 3.5E-41 7.6E-46 361.6 21.0 201 361-574 2-214 (214)
236 PRK14249 phosphate ABC transpo 100.0 7.3E-41 1.6E-45 367.9 23.9 217 360-586 4-235 (251)
237 PRK13648 cbiO cobalt transport 100.0 7.8E-41 1.7E-45 370.9 24.3 215 360-586 7-231 (269)
238 PRK10253 iron-enterobactin tra 100.0 5.3E-41 1.2E-45 371.3 22.9 214 359-586 6-233 (265)
239 cd03225 ABC_cobalt_CbiO_domain 100.0 3.5E-41 7.6E-46 360.8 20.8 201 362-574 1-211 (211)
240 PRK10619 histidine/lysine/argi 100.0 6.1E-41 1.3E-45 369.6 23.3 215 359-586 4-241 (257)
241 PRK13645 cbiO cobalt transport 100.0 6.6E-41 1.4E-45 375.2 23.8 218 359-586 5-240 (289)
242 cd03247 ABCC_cytochrome_bd The 100.0 5.2E-41 1.1E-45 348.7 21.4 178 361-579 1-178 (178)
243 PRK09473 oppD oligopeptide tra 100.0 3.7E-41 8E-46 381.0 21.8 229 360-596 12-261 (330)
244 cd03235 ABC_Metallic_Cations A 100.0 2.5E-41 5.5E-46 362.3 19.4 198 362-579 1-213 (213)
245 PRK14243 phosphate transporter 100.0 9.8E-41 2.1E-45 368.7 24.6 218 360-587 10-249 (264)
246 PRK13536 nodulation factor exp 100.0 3.6E-41 7.8E-46 381.7 21.6 212 360-586 41-261 (340)
247 PRK14261 phosphate ABC transpo 100.0 6.8E-41 1.5E-45 368.6 23.2 217 360-586 6-237 (253)
248 cd03292 ABC_FtsE_transporter F 100.0 5.3E-41 1.1E-45 360.4 21.7 202 361-575 1-214 (214)
249 PRK14238 phosphate transporter 100.0 9.5E-41 2.1E-45 370.0 24.4 218 360-587 24-256 (271)
250 COG1131 CcmA ABC-type multidru 100.0 4.9E-41 1.1E-45 373.1 22.0 213 360-586 4-226 (293)
251 PRK14253 phosphate ABC transpo 100.0 1.1E-40 2.4E-45 366.2 24.2 217 360-586 3-233 (249)
252 PRK14270 phosphate ABC transpo 100.0 1E-40 2.2E-45 366.8 23.9 218 360-587 4-236 (251)
253 PRK13649 cbiO cobalt transport 100.0 5.5E-41 1.2E-45 374.6 22.1 216 361-586 3-234 (280)
254 PRK14262 phosphate ABC transpo 100.0 7E-41 1.5E-45 368.0 22.4 217 360-586 3-234 (250)
255 PRK10247 putative ABC transpor 100.0 9.8E-41 2.1E-45 360.1 23.1 210 360-582 7-223 (225)
256 TIGR03873 F420-0_ABC_ATP propo 100.0 8.4E-41 1.8E-45 368.3 22.9 212 361-586 2-226 (256)
257 TIGR03522 GldA_ABC_ATP gliding 100.0 5.7E-41 1.2E-45 377.0 21.8 211 361-586 3-221 (301)
258 PRK15093 antimicrobial peptide 100.0 1E-40 2.2E-45 378.7 24.0 228 361-596 4-258 (330)
259 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.2E-40 2.5E-45 356.6 22.9 201 361-579 1-211 (211)
260 PRK10895 lipopolysaccharide AB 100.0 8.5E-41 1.8E-45 365.2 22.2 217 360-586 3-226 (241)
261 PRK10584 putative ABC transpor 100.0 1.3E-40 2.8E-45 360.8 23.3 208 360-578 6-227 (228)
262 PRK11300 livG leucine/isoleuci 100.0 1.2E-40 2.5E-45 367.6 23.1 220 360-586 5-243 (255)
263 PRK13639 cbiO cobalt transport 100.0 8.4E-41 1.8E-45 371.2 22.1 213 361-586 2-226 (275)
264 COG1137 YhbG ABC-type (unclass 100.0 6.4E-42 1.4E-46 335.2 11.5 223 359-587 3-229 (243)
265 PRK10908 cell division protein 100.0 1.4E-40 3E-45 358.8 23.1 204 361-577 2-217 (222)
266 PRK11144 modC molybdate transp 100.0 9.4E-41 2E-45 382.0 22.7 211 361-588 2-220 (352)
267 PRK14260 phosphate ABC transpo 100.0 1.3E-40 2.9E-45 367.1 22.9 218 359-586 6-243 (259)
268 cd03290 ABCC_SUR1_N The SUR do 100.0 2.3E-40 4.9E-45 356.1 24.0 210 362-574 2-218 (218)
269 PRK14271 phosphate ABC transpo 100.0 2.4E-40 5.2E-45 367.2 24.9 218 360-587 21-252 (276)
270 cd03262 ABC_HisP_GlnQ_permease 100.0 8.8E-41 1.9E-45 358.4 20.6 201 361-575 1-213 (213)
271 PRK14254 phosphate ABC transpo 100.0 2.3E-40 5E-45 368.7 24.3 218 359-586 38-269 (285)
272 cd03257 ABC_NikE_OppD_transpor 100.0 2.7E-40 5.8E-45 358.7 24.2 212 361-579 2-228 (228)
273 cd03246 ABCC_Protease_Secretio 100.0 1.7E-40 3.7E-45 342.9 21.4 172 361-575 1-173 (173)
274 PRK14266 phosphate ABC transpo 100.0 2.8E-40 6E-45 363.3 24.4 218 360-587 3-235 (250)
275 PRK10771 thiQ thiamine transpo 100.0 2.5E-40 5.5E-45 359.1 23.7 208 361-586 2-219 (232)
276 cd03269 ABC_putative_ATPase Th 100.0 1E-40 2.2E-45 356.8 20.3 201 361-579 1-210 (210)
277 cd03300 ABC_PotA_N PotA is an 100.0 1.3E-40 2.7E-45 361.3 20.8 210 361-586 1-220 (232)
278 COG0411 LivG ABC-type branched 100.0 2.7E-41 5.8E-46 345.3 14.5 220 361-587 5-240 (250)
279 PRK09984 phosphonate/organopho 100.0 3.6E-40 7.9E-45 364.5 24.8 211 360-584 4-240 (262)
280 TIGR00968 3a0106s01 sulfate AB 100.0 3.1E-40 6.8E-45 359.2 23.6 210 361-586 1-220 (237)
281 PRK14275 phosphate ABC transpo 100.0 2.3E-40 5.1E-45 369.2 22.9 219 359-587 38-271 (286)
282 PRK14241 phosphate transporter 100.0 2.1E-40 4.7E-45 365.5 22.3 217 360-586 4-242 (258)
283 PRK14263 phosphate ABC transpo 100.0 3.1E-40 6.7E-45 363.5 23.4 218 360-587 8-246 (261)
284 PRK14272 phosphate ABC transpo 100.0 2.7E-40 5.9E-45 364.0 22.4 219 360-588 4-238 (252)
285 PRK13547 hmuV hemin importer A 100.0 4.4E-40 9.5E-45 363.2 24.0 212 361-586 2-244 (272)
286 PRK15112 antimicrobial peptide 100.0 3.9E-40 8.4E-45 364.6 23.7 227 360-597 4-251 (267)
287 PRK14252 phosphate ABC transpo 100.0 3.4E-40 7.4E-45 365.2 23.2 219 358-586 14-249 (265)
288 COG1123 ATPase components of v 100.0 2.5E-40 5.5E-45 379.3 22.5 229 359-598 279-531 (539)
289 COG0444 DppD ABC-type dipeptid 100.0 2.4E-40 5.3E-45 353.8 20.8 230 361-598 2-255 (316)
290 TIGR01978 sufC FeS assembly AT 100.0 2.5E-40 5.5E-45 362.5 21.4 212 361-585 1-233 (243)
291 PRK14258 phosphate ABC transpo 100.0 3.9E-40 8.5E-45 363.6 22.9 219 359-587 6-246 (261)
292 PRK11701 phnK phosphonate C-P 100.0 4.8E-40 1E-44 362.7 23.6 226 360-594 6-249 (258)
293 PRK14265 phosphate ABC transpo 100.0 8.3E-40 1.8E-44 362.8 25.6 219 359-587 19-259 (274)
294 TIGR01188 drrA daunorubicin re 100.0 1.9E-40 4.2E-45 373.2 20.7 198 377-586 7-213 (302)
295 TIGR01277 thiQ thiamine ABC tr 100.0 4.8E-40 1.1E-44 352.0 22.8 202 361-580 1-212 (213)
296 COG4598 HisP ABC-type histidin 100.0 1.1E-40 2.4E-45 319.4 15.1 215 360-588 6-243 (256)
297 PRK14246 phosphate ABC transpo 100.0 4.3E-40 9.4E-45 361.5 21.7 226 359-594 9-249 (257)
298 PRK14255 phosphate ABC transpo 100.0 5.5E-40 1.2E-44 361.4 22.3 217 360-586 5-236 (252)
299 cd03299 ABC_ModC_like Archeal 100.0 8.2E-40 1.8E-44 355.4 23.1 209 361-586 1-219 (235)
300 PRK14264 phosphate ABC transpo 100.0 1E-39 2.3E-44 367.1 24.4 218 359-586 44-289 (305)
301 PRK11248 tauB taurine transpor 100.0 7.3E-40 1.6E-44 359.3 22.5 203 361-582 2-216 (255)
302 TIGR02142 modC_ABC molybdenum 100.0 5.5E-40 1.2E-44 376.4 22.4 209 365-589 4-224 (354)
303 cd03234 ABCG_White The White s 100.0 8E-40 1.7E-44 353.7 20.6 214 361-579 4-226 (226)
304 TIGR03740 galliderm_ABC gallid 100.0 1.3E-39 2.9E-44 351.4 22.0 205 361-583 1-210 (223)
305 COG4559 ABC-type hemin transpo 100.0 2E-39 4.3E-44 320.6 20.3 212 361-586 2-230 (259)
306 COG4619 ABC-type uncharacteriz 100.0 6.5E-40 1.4E-44 311.2 15.6 191 375-575 15-212 (223)
307 TIGR02982 heterocyst_DevA ABC 100.0 2.5E-39 5.5E-44 348.3 22.3 204 361-575 2-219 (220)
308 PRK10419 nikE nickel transport 100.0 2.6E-39 5.6E-44 357.9 22.8 228 361-596 4-250 (268)
309 cd03228 ABCC_MRP_Like The MRP 100.0 3.3E-39 7.1E-44 332.7 21.0 171 361-574 1-171 (171)
310 cd03229 ABC_Class3 This class 100.0 2.7E-39 5.9E-44 335.6 20.4 172 361-574 1-178 (178)
311 cd03297 ABC_ModC_molybdenum_tr 100.0 3E-39 6.5E-44 346.3 21.4 200 362-579 3-214 (214)
312 cd03230 ABC_DR_subfamily_A Thi 100.0 2.6E-39 5.7E-44 334.1 20.2 170 361-575 1-173 (173)
313 cd03233 ABC_PDR_domain1 The pl 100.0 3.5E-39 7.6E-44 341.5 21.4 191 360-579 3-202 (202)
314 COG4181 Predicted ABC-type tra 100.0 1.4E-39 2.9E-44 310.1 15.9 208 360-578 6-227 (228)
315 PRK10418 nikD nickel transport 100.0 4.7E-39 1E-43 353.7 22.7 214 360-587 4-231 (254)
316 TIGR02323 CP_lyasePhnK phospho 100.0 6.3E-39 1.4E-43 353.2 23.4 224 360-593 3-245 (253)
317 COG4161 ArtP ABC-type arginine 100.0 2.3E-39 5.1E-44 304.6 16.0 220 360-593 2-237 (242)
318 COG4525 TauB ABC-type taurine 100.0 2.2E-39 4.7E-44 315.3 15.8 205 361-582 4-220 (259)
319 COG4172 ABC-type uncharacteriz 100.0 8.5E-39 1.8E-43 342.8 21.2 226 358-595 274-525 (534)
320 PRK15056 manganese/iron transp 100.0 8.8E-39 1.9E-43 354.8 22.1 210 360-586 6-230 (272)
321 COG4604 CeuD ABC-type enteroch 100.0 2E-39 4.4E-44 316.4 14.5 221 361-597 2-234 (252)
322 cd03213 ABCG_EPDR ABCG transpo 100.0 7.4E-39 1.6E-43 336.7 20.0 183 360-579 3-194 (194)
323 PRK09544 znuC high-affinity zi 100.0 2.1E-38 4.6E-43 346.2 23.2 208 360-596 4-217 (251)
324 PRK10261 glutathione transport 100.0 1.4E-38 2.9E-43 391.7 24.2 224 360-594 313-561 (623)
325 CHL00131 ycf16 sulfate ABC tra 100.0 1.9E-38 4.2E-43 349.3 22.9 212 360-584 7-239 (252)
326 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.7E-38 3.6E-43 336.0 21.4 185 361-585 1-192 (200)
327 cd03214 ABC_Iron-Siderophores_ 100.0 1.1E-38 2.4E-43 331.7 19.5 177 362-579 1-180 (180)
328 TIGR03608 L_ocin_972_ABC putat 100.0 9E-39 1.9E-43 341.0 19.3 194 363-570 1-206 (206)
329 cd03215 ABC_Carb_Monos_II This 100.0 1.1E-38 2.5E-43 332.2 19.4 172 360-575 4-182 (182)
330 PRK09580 sufC cysteine desulfu 100.0 1.2E-38 2.5E-43 350.3 20.1 219 361-584 2-233 (248)
331 cd03231 ABC_CcmA_heme_exporter 100.0 3.2E-38 7E-43 334.3 22.2 195 361-570 1-198 (201)
332 cd03232 ABC_PDR_domain2 The pl 100.0 1.5E-38 3.3E-43 334.0 19.6 182 360-579 3-192 (192)
333 COG4608 AppF ABC-type oligopep 100.0 9.9E-39 2.1E-43 334.5 17.9 198 360-598 4-211 (268)
334 cd03223 ABCD_peroxisomal_ALDP 100.0 2.3E-38 5E-43 324.0 20.3 164 361-574 1-164 (166)
335 PRK03695 vitamin B12-transport 100.0 3.9E-38 8.5E-43 344.6 22.6 206 362-586 2-222 (248)
336 TIGR02770 nickel_nikD nickel i 100.0 3.5E-38 7.7E-43 341.6 20.2 206 378-593 1-222 (230)
337 PRK13538 cytochrome c biogenes 100.0 6E-38 1.3E-42 333.3 21.1 195 361-570 2-202 (204)
338 TIGR01184 ntrCD nitrate transp 100.0 6.4E-38 1.4E-42 339.1 21.7 191 379-585 1-203 (230)
339 cd03216 ABC_Carb_Monos_I This 100.0 7.2E-38 1.6E-42 319.3 20.8 159 361-577 1-162 (163)
340 cd03267 ABC_NatA_like Similar 100.0 4.9E-38 1.1E-42 341.5 20.2 192 376-579 34-236 (236)
341 PRK13540 cytochrome c biogenes 100.0 7.6E-38 1.6E-42 331.4 20.7 194 361-569 2-198 (200)
342 COG4148 ModC ABC-type molybdat 100.0 3.5E-38 7.6E-43 323.6 15.7 196 380-586 15-218 (352)
343 PRK13543 cytochrome c biogenes 100.0 2.8E-37 6E-42 330.6 21.7 196 360-572 11-212 (214)
344 PRK15134 microcin C ABC transp 100.0 1.2E-37 2.7E-42 378.5 21.2 217 360-587 275-516 (529)
345 KOG0060 Long-chain acyl-CoA tr 100.0 1.3E-34 2.7E-39 324.7 42.5 418 143-572 186-641 (659)
346 PRK13539 cytochrome c biogenes 100.0 4.5E-37 9.7E-42 327.2 21.6 194 361-572 3-200 (207)
347 TIGR01189 ccmA heme ABC export 100.0 3.2E-37 7E-42 326.2 20.1 193 361-569 1-197 (198)
348 PRK13549 xylose transporter AT 100.0 3.6E-37 7.7E-42 372.4 20.5 219 360-585 259-493 (506)
349 TIGR02324 CP_lyasePhnL phospho 100.0 9.3E-37 2E-41 329.7 20.4 200 361-570 2-222 (224)
350 PRK13545 tagH teichoic acids e 100.0 2.7E-36 6E-41 347.7 25.1 203 360-586 21-232 (549)
351 TIGR03269 met_CoM_red_A2 methy 100.0 6.3E-37 1.4E-41 371.8 20.5 221 360-586 279-517 (520)
352 TIGR01257 rim_protein retinal- 100.0 5.9E-35 1.3E-39 382.2 39.5 215 359-586 1936-2159(2272)
353 TIGR03771 anch_rpt_ABC anchore 100.0 1E-36 2.2E-41 328.2 18.6 186 384-586 1-201 (223)
354 TIGR01166 cbiO cobalt transpor 100.0 1.3E-36 2.8E-41 319.6 18.5 174 376-560 5-189 (190)
355 PRK13546 teichoic acids export 100.0 2.6E-36 5.7E-41 331.3 21.5 204 360-587 4-233 (264)
356 PLN03211 ABC transporter G-25; 100.0 6.4E-37 1.4E-41 375.5 18.0 202 376-586 81-296 (659)
357 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2E-36 4.4E-41 325.9 19.3 193 361-579 23-224 (224)
358 TIGR00955 3a01204 The Eye Pigm 100.0 9.6E-37 2.1E-41 374.9 18.0 204 375-586 37-256 (617)
359 PRK09700 D-allose transporter 100.0 2.1E-36 4.5E-41 366.5 20.2 212 360-583 265-495 (510)
360 PRK13541 cytochrome c biogenes 100.0 4.1E-36 8.8E-41 316.8 19.4 188 361-567 2-192 (195)
361 PRK10535 macrolide transporter 100.0 6.9E-36 1.5E-40 368.9 24.5 219 360-585 4-231 (648)
362 TIGR02633 xylG D-xylose ABC tr 100.0 3E-36 6.5E-41 364.5 19.9 218 360-584 257-490 (500)
363 TIGR01187 potA spermidine/putr 100.0 9.1E-36 2E-40 337.5 18.7 183 394-589 1-193 (325)
364 PRK10762 D-ribose transporter 100.0 9.5E-36 2.1E-40 359.5 19.6 211 360-585 257-483 (501)
365 PRK11288 araG L-arabinose tran 100.0 1.1E-35 2.4E-40 358.9 18.7 212 360-585 257-484 (501)
366 COG4152 ABC-type uncharacteriz 100.0 5.4E-36 1.2E-40 302.3 12.7 213 360-586 2-219 (300)
367 COG1101 PhnK ABC-type uncharac 100.0 3.9E-35 8.4E-40 290.9 17.5 208 375-582 18-234 (263)
368 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.6E-35 1.2E-39 317.7 19.6 193 368-585 1-206 (246)
369 PRK15064 ABC transporter ATP-b 100.0 7.6E-35 1.7E-39 354.1 22.2 200 360-586 319-525 (530)
370 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 6.8E-35 1.5E-39 290.5 17.9 143 361-574 1-144 (144)
371 cd03236 ABC_RNaseL_inhibitor_d 100.0 4E-35 8.7E-40 319.9 16.3 201 364-579 4-220 (255)
372 PRK15439 autoinducer 2 ABC tra 100.0 6.3E-35 1.4E-39 352.5 19.2 212 360-586 268-492 (510)
373 PRK15177 Vi polysaccharide exp 100.0 1.1E-34 2.3E-39 309.4 18.4 185 378-586 2-192 (213)
374 TIGR00956 3a01205 Pleiotropic 100.0 9.6E-35 2.1E-39 382.7 21.4 214 360-584 759-991 (1394)
375 COG4136 ABC-type uncharacteriz 100.0 1.9E-34 4.2E-39 268.6 15.5 195 360-570 2-207 (213)
376 COG4167 SapF ABC-type antimicr 100.0 1.3E-34 2.8E-39 278.4 14.5 229 361-599 5-253 (267)
377 PRK10982 galactose/methyl gala 100.0 2.5E-34 5.5E-39 346.6 20.3 213 360-584 250-478 (491)
378 PRK10938 putative molybdenum t 100.0 2E-34 4.4E-39 347.6 18.8 207 359-578 259-484 (490)
379 COG4615 PvdE ABC-type sideroph 100.0 9.3E-31 2E-35 279.9 42.4 380 722-1118 50-431 (546)
380 COG1119 ModF ABC-type molybden 100.0 1E-33 2.2E-38 289.4 17.7 211 359-580 30-256 (257)
381 cd03222 ABC_RNaseL_inhibitor T 100.0 1.2E-33 2.5E-38 289.1 16.6 152 364-583 4-160 (177)
382 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.5E-33 7.7E-38 283.9 19.3 154 363-574 2-157 (157)
383 PRK11819 putative ABC transpor 100.0 3.7E-33 8E-38 340.3 21.9 202 359-586 323-533 (556)
384 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4E-33 8.6E-38 340.1 22.2 202 359-586 321-531 (552)
385 PLN03140 ABC transporter G fam 100.0 3.4E-31 7.4E-36 347.3 41.4 215 359-583 866-1107(1470)
386 PRK13409 putative ATPase RIL; 100.0 3.7E-33 8E-38 338.2 20.9 194 360-582 340-538 (590)
387 COG4674 Uncharacterized ABC-ty 100.0 1.6E-33 3.5E-38 274.7 14.0 213 360-586 5-235 (249)
388 PRK10636 putative ABC transpor 100.0 4.3E-33 9.4E-38 343.0 21.5 199 360-584 312-515 (638)
389 PLN03073 ABC transporter F fam 100.0 6.8E-33 1.5E-37 341.4 21.5 200 359-584 507-712 (718)
390 COG0396 sufC Cysteine desulfur 100.0 1.8E-32 3.8E-37 276.6 20.1 214 360-586 3-233 (251)
391 PRK11147 ABC transporter ATPas 100.0 9.1E-33 2E-37 341.3 22.2 199 360-584 319-526 (635)
392 cd03238 ABC_UvrA The excision 100.0 2.5E-32 5.3E-37 279.1 18.9 156 376-575 8-166 (176)
393 KOG0065 Pleiotropic drug resis 100.0 7.6E-31 1.6E-35 320.6 30.4 208 376-586 128-351 (1391)
394 COG4107 PhnK ABC-type phosphon 100.0 1.2E-31 2.6E-36 255.9 17.3 227 360-597 6-252 (258)
395 COG1134 TagH ABC-type polysacc 100.0 1.4E-31 3.1E-36 274.5 18.3 188 375-586 39-236 (249)
396 KOG0927 Predicted transporter 100.0 7.4E-30 1.6E-34 284.6 25.3 221 359-586 74-309 (614)
397 KOG0064 Peroxisomal long-chain 100.0 1.6E-27 3.5E-32 263.3 42.9 432 110-564 183-675 (728)
398 KOG0061 Transporter, ABC super 100.0 1.3E-30 2.8E-35 316.4 17.2 218 359-586 24-260 (613)
399 COG4586 ABC-type uncharacteriz 100.0 1.4E-30 3E-35 267.7 12.8 202 377-586 38-246 (325)
400 PF00005 ABC_tran: ABC transpo 100.0 4.4E-30 9.5E-35 255.3 11.9 136 379-528 1-137 (137)
401 COG4133 CcmA ABC-type transpor 100.0 2.8E-29 6E-34 245.4 12.1 188 361-563 3-195 (209)
402 COG0488 Uup ATPase components 100.0 6.5E-28 1.4E-32 284.0 23.1 203 358-586 319-525 (530)
403 cd03270 ABC_UvrA_I The excisio 100.0 1.3E-28 2.9E-33 264.9 15.9 191 376-579 8-226 (226)
404 COG4778 PhnL ABC-type phosphon 100.0 1.2E-28 2.7E-33 234.8 10.5 202 360-571 4-226 (235)
405 cd03271 ABC_UvrA_II The excisi 100.0 8.6E-28 1.9E-32 260.2 16.3 193 378-581 10-261 (261)
406 cd03278 ABC_SMC_barmotin Barmo 99.9 7.8E-28 1.7E-32 252.5 13.8 164 380-572 14-190 (197)
407 COG4178 ABC-type uncharacteriz 99.9 1.7E-23 3.7E-28 244.0 47.0 392 722-1129 88-508 (604)
408 KOG0059 Lipid exporter ABCA1 a 99.9 3E-27 6.5E-32 299.7 16.7 215 359-586 563-787 (885)
409 COG4138 BtuD ABC-type cobalami 99.9 1.3E-27 2.8E-32 228.8 5.4 207 361-586 4-221 (248)
410 cd03289 ABCC_CFTR2 The CFTR su 99.9 2.7E-26 5.9E-31 252.8 13.3 130 1000-1133 1-130 (275)
411 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.5E-26 5.5E-31 245.4 12.3 192 360-575 5-211 (213)
412 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3.8E-26 8.3E-31 250.2 12.6 191 361-571 4-234 (243)
413 PF00664 ABC_membrane: ABC tra 99.9 1.2E-22 2.7E-27 225.4 38.7 272 37-314 2-275 (275)
414 COG1129 MglA ABC-type sugar tr 99.9 7E-25 1.5E-29 250.9 19.1 213 360-583 263-487 (500)
415 cd03273 ABC_SMC2_euk Eukaryoti 99.9 3.2E-25 6.9E-30 243.4 12.6 182 389-571 25-242 (251)
416 KOG0062 ATPase component of AB 99.9 3.1E-24 6.7E-29 238.6 19.1 188 358-575 78-273 (582)
417 cd03240 ABC_Rad50 The catalyti 99.9 6.3E-25 1.4E-29 232.1 12.7 163 382-572 16-197 (204)
418 KOG0927 Predicted transporter 99.9 3.6E-25 7.8E-30 247.3 10.0 194 359-577 388-586 (614)
419 PF00664 ABC_membrane: ABC tra 99.9 1.3E-21 2.9E-26 217.0 36.8 273 680-955 2-275 (275)
420 KOG0065 Pleiotropic drug resis 99.9 9.5E-25 2.1E-29 267.6 10.8 200 375-584 803-1019(1391)
421 cd03274 ABC_SMC4_euk Eukaryoti 99.9 9E-25 1.9E-29 232.0 9.0 184 360-572 5-204 (212)
422 PRK00635 excinuclease ABC subu 99.9 2.5E-23 5.4E-28 269.4 18.5 211 360-586 600-906 (1809)
423 PRK00349 uvrA excinuclease ABC 99.9 5E-23 1.1E-27 257.1 19.7 97 492-588 823-929 (943)
424 COG2884 FtsE Predicted ATPase 99.9 5.4E-24 1.2E-28 208.1 7.9 128 1002-1131 2-138 (223)
425 COG1117 PstB ABC-type phosphat 99.9 1.2E-23 2.6E-28 209.5 9.1 123 1000-1125 6-140 (253)
426 COG3845 ABC-type uncharacteriz 99.9 1.8E-22 3.9E-27 225.5 19.3 215 359-584 256-490 (501)
427 COG4170 SapD ABC-type antimicr 99.9 4.4E-23 9.5E-28 203.2 12.0 224 363-597 6-259 (330)
428 COG1125 OpuBA ABC-type proline 99.9 1.3E-23 2.8E-28 214.4 8.6 127 1002-1131 2-136 (309)
429 cd03244 ABCC_MRP_domain2 Domai 99.9 8E-23 1.7E-27 220.5 13.6 131 1000-1133 1-131 (221)
430 PRK14257 phosphate ABC transpo 99.9 8.2E-23 1.8E-27 231.2 12.8 125 998-1123 77-214 (329)
431 cd03275 ABC_SMC1_euk Eukaryoti 99.9 5.2E-23 1.1E-27 225.0 9.6 183 390-572 23-233 (247)
432 COG1126 GlnQ ABC-type polar am 99.9 1E-22 2.2E-27 204.3 9.9 128 1001-1131 2-137 (240)
433 cd03288 ABCC_SUR2 The SUR doma 99.9 2.6E-22 5.6E-27 221.2 13.4 133 998-1133 16-148 (257)
434 TIGR00630 uvra excinuclease AB 99.9 1.2E-21 2.6E-26 244.4 20.6 97 488-584 816-923 (924)
435 cd03248 ABCC_TAP TAP, the Tran 99.9 3.6E-22 7.8E-27 216.1 13.7 135 998-1133 8-142 (226)
436 cd03254 ABCC_Glucan_exporter_l 99.9 3.2E-22 7E-27 217.1 13.1 131 1000-1133 1-131 (229)
437 cd03252 ABCC_Hemolysin The ABC 99.9 3.7E-22 7.9E-27 217.8 13.3 129 1002-1132 1-129 (237)
438 KOG0062 ATPase component of AB 99.9 9.2E-22 2E-26 219.1 15.4 212 358-600 360-575 (582)
439 COG3839 MalK ABC-type sugar tr 99.9 3.4E-22 7.3E-27 220.3 11.3 126 1001-1131 3-134 (338)
440 KOG0066 eIF2-interacting prote 99.9 6.8E-22 1.5E-26 213.4 12.9 191 359-575 585-779 (807)
441 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 8.1E-22 1.7E-26 215.2 12.8 131 1002-1133 1-131 (238)
442 COG1135 AbcC ABC-type metal io 99.9 5.3E-22 1.2E-26 209.4 10.6 130 1002-1131 2-142 (339)
443 cd03245 ABCC_bacteriocin_expor 99.9 1.7E-21 3.7E-26 210.1 13.9 132 1000-1133 1-132 (220)
444 cd03253 ABCC_ATM1_transporter 99.9 1.2E-21 2.6E-26 213.6 12.9 129 1002-1133 1-129 (236)
445 KOG0060 Long-chain acyl-CoA tr 99.9 5.2E-19 1.1E-23 199.8 34.0 391 722-1132 128-560 (659)
446 cd03251 ABCC_MsbA MsbA is an e 99.9 1.5E-21 3.3E-26 212.6 13.2 130 1002-1133 1-130 (234)
447 COG3842 PotA ABC-type spermidi 99.9 8.9E-22 1.9E-26 218.2 10.5 127 1000-1131 4-137 (352)
448 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.9E-21 6.2E-26 203.0 13.6 172 379-574 12-192 (198)
449 COG1245 Predicted ATPase, RNas 99.9 4.5E-21 9.8E-26 209.9 15.5 180 366-572 341-531 (591)
450 cd03250 ABCC_MRP_domain1 Domai 99.9 2.2E-21 4.9E-26 206.3 12.4 117 1002-1133 1-119 (204)
451 PRK13650 cbiO cobalt transport 99.8 2.2E-21 4.8E-26 216.0 11.6 131 1001-1131 4-141 (279)
452 COG1120 FepC ABC-type cobalami 99.8 1.9E-21 4.1E-26 206.4 10.4 123 1001-1126 2-134 (258)
453 COG3840 ThiQ ABC-type thiamine 99.8 1.7E-21 3.6E-26 188.9 9.0 123 1002-1131 2-130 (231)
454 COG1116 TauB ABC-type nitrate/ 99.8 2.2E-21 4.8E-26 201.4 10.5 123 1001-1131 3-131 (248)
455 COG1122 CbiO ABC-type cobalt t 99.8 3.7E-21 8.1E-26 204.7 11.9 128 1001-1130 3-138 (235)
456 COG3638 ABC-type phosphate/pho 99.8 3.7E-21 7.9E-26 195.7 10.9 123 1001-1125 3-142 (258)
457 TIGR00960 3a0501s02 Type II (G 99.8 2.4E-21 5.3E-26 208.1 10.3 129 1002-1131 2-139 (216)
458 TIGR02314 ABC_MetN D-methionin 99.8 3E-21 6.4E-26 218.7 10.6 130 1002-1131 2-141 (343)
459 cd03369 ABCC_NFT1 Domain 2 of 99.8 4.6E-21 9.9E-26 204.5 11.0 115 999-1116 4-118 (207)
460 COG1127 Ttg2A ABC-type transpo 99.8 4.5E-21 9.8E-26 195.6 9.7 126 1001-1129 8-144 (263)
461 PRK13647 cbiO cobalt transport 99.8 6.3E-21 1.4E-25 211.8 11.0 129 1001-1131 4-139 (274)
462 PRK13631 cbiO cobalt transport 99.8 7.4E-21 1.6E-25 214.7 11.4 129 1000-1128 20-174 (320)
463 cd03290 ABCC_SUR1_N The SUR do 99.8 1.5E-20 3.3E-25 202.2 12.6 127 1003-1133 2-132 (218)
464 cd03266 ABC_NatA_sodium_export 99.8 1E-20 2.3E-25 203.6 11.3 127 1002-1129 2-135 (218)
465 PRK11629 lolD lipoprotein tran 99.8 9E-21 2E-25 206.1 10.8 129 1001-1129 5-144 (233)
466 cd03260 ABC_PstB_phosphate_tra 99.8 7.9E-21 1.7E-25 205.8 10.1 123 1002-1127 1-136 (227)
467 cd03261 ABC_Org_Solvent_Resist 99.8 5.6E-21 1.2E-25 208.1 8.9 125 1002-1129 1-135 (235)
468 PRK14269 phosphate ABC transpo 99.8 8.8E-21 1.9E-25 207.8 10.1 122 1001-1125 2-133 (246)
469 KOG0066 eIF2-interacting prote 99.8 6.3E-20 1.4E-24 198.3 16.3 199 360-574 264-486 (807)
470 PRK14250 phosphate ABC transpo 99.8 1.5E-20 3.3E-25 205.1 11.6 125 1001-1128 3-129 (241)
471 cd03226 ABC_cobalt_CbiO_domain 99.8 8.7E-21 1.9E-25 202.0 9.4 124 1003-1131 1-127 (205)
472 PRK13635 cbiO cobalt transport 99.8 1.4E-20 3.1E-25 209.3 11.2 130 1001-1131 5-141 (279)
473 PRK13637 cbiO cobalt transport 99.8 1.4E-20 2.9E-25 210.4 10.8 128 1002-1129 3-143 (287)
474 cd03264 ABC_drug_resistance_li 99.8 1.4E-20 3E-25 201.4 10.1 123 1002-1129 1-129 (211)
475 PRK13646 cbiO cobalt transport 99.8 1.4E-20 3E-25 210.4 10.5 129 1001-1129 2-144 (286)
476 TIGR02673 FtsE cell division A 99.8 1.5E-20 3.3E-25 201.8 10.3 127 1002-1130 2-137 (214)
477 cd03292 ABC_FtsE_transporter F 99.8 1.4E-20 3.1E-25 202.0 10.1 128 1002-1131 1-137 (214)
478 PRK13642 cbiO cobalt transport 99.8 2E-20 4.3E-25 208.3 11.5 131 1001-1131 4-141 (277)
479 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 1.3E-20 2.8E-25 202.9 9.6 128 1002-1129 1-139 (218)
480 PRK13643 cbiO cobalt transport 99.8 1.6E-20 3.4E-25 210.0 10.6 128 1002-1129 2-143 (288)
481 PRK13632 cbiO cobalt transport 99.8 1.9E-20 4.2E-25 207.9 11.1 130 1001-1131 7-143 (271)
482 cd03239 ABC_SMC_head The struc 99.8 7E-20 1.5E-24 188.8 13.6 85 482-572 83-172 (178)
483 cd03263 ABC_subfamily_A The AB 99.8 2.2E-20 4.8E-25 201.4 10.4 125 1002-1128 1-131 (220)
484 cd03268 ABC_BcrA_bacitracin_re 99.8 2.3E-20 4.9E-25 199.3 10.3 123 1002-1129 1-125 (208)
485 cd03258 ABC_MetN_methionine_tr 99.8 2.5E-20 5.4E-25 202.8 10.6 129 1002-1130 2-140 (233)
486 PRK10247 putative ABC transpor 99.8 4.1E-20 8.9E-25 199.6 12.2 119 1001-1122 7-128 (225)
487 PRK10908 cell division protein 99.8 2.7E-20 5.7E-25 200.9 10.6 126 1002-1129 2-136 (222)
488 PRK10584 putative ABC transpor 99.8 3.7E-20 8E-25 200.7 11.6 131 1001-1131 6-147 (228)
489 PRK10575 iron-hydroxamate tran 99.8 2.7E-20 5.8E-25 206.2 10.6 128 1001-1131 11-148 (265)
490 TIGR02315 ABC_phnC phosphonate 99.8 3.7E-20 8E-25 202.9 11.6 126 1002-1129 2-144 (243)
491 cd03259 ABC_Carb_Solutes_like 99.8 1.9E-20 4.2E-25 200.7 9.1 123 1002-1129 1-129 (213)
492 PRK13540 cytochrome c biogenes 99.8 4.2E-20 9.2E-25 195.7 11.5 121 1002-1126 2-123 (200)
493 PRK13640 cbiO cobalt transport 99.8 5.2E-20 1.1E-24 205.4 12.8 131 1000-1131 4-144 (282)
494 cd03256 ABC_PhnC_transporter A 99.8 3.6E-20 7.7E-25 202.8 11.3 126 1002-1129 1-143 (241)
495 COG1136 SalX ABC-type antimicr 99.8 5.7E-20 1.2E-24 191.3 11.9 128 1002-1129 2-141 (226)
496 KOG2355 Predicted ABC-type tra 99.8 2E-19 4.4E-24 177.3 15.0 211 358-584 11-235 (291)
497 TIGR02211 LolD_lipo_ex lipopro 99.8 3.7E-20 7.9E-25 199.8 10.8 129 1002-1130 2-141 (221)
498 PRK13652 cbiO cobalt transport 99.8 3.9E-20 8.4E-25 206.0 11.3 128 1002-1131 4-138 (277)
499 cd03262 ABC_HisP_GlnQ_permease 99.8 3.2E-20 7E-25 199.1 10.2 125 1002-1129 1-134 (213)
500 cd03231 ABC_CcmA_heme_exporter 99.8 5.7E-20 1.2E-24 194.8 11.9 122 1002-1128 1-123 (201)
No 1
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.3e-189 Score=1701.78 Aligned_cols=1102 Identities=48% Similarity=0.801 Sum_probs=1007.4
Q ss_pred cchHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041277 18 NGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVAC 97 (1133)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (1133)
..++.++|+|..+.++.++++|.+++++.++..|++.++++++++.+....+ . ...+....+++.+++++++.+++.
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~--~-~~~~~~~~~~l~~~~lg~~~~~~~ 88 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTN--K-IASSEVSKVALYFVYLGVGVFISG 88 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccc--h-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999999999999999999999998865421 1 112456677888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 041277 98 FLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVA 177 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1133)
|++..||.+.++|...++|.++++.++|++++|||. + .+|++.+++++|++.|++.+++.++.+++.+.++++++++.
T Consensus 89 ~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~-~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~ 166 (1228)
T KOG0055|consen 89 FIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDT-N-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIG 166 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeec-c-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 5 67999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHH
Q 041277 178 FLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQL 257 (1133)
Q Consensus 178 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 257 (1133)
|+..|+|+++++.+.|++++....+.+.+.+...+.+++++++.++++|+++++|||.+|+.|+++.+||.+.++..++.
T Consensus 167 F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~ 246 (1228)
T KOG0055|consen 167 FYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKF 246 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 258 GLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIME 336 (1133)
Q Consensus 258 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 336 (1133)
..+..+..++..+ ..++.+.++++.+|||+.++..+..++|++++++++++.....+++..|.+..+.+|++|+.+|++
T Consensus 247 gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~ 326 (1228)
T KOG0055|consen 247 GIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFE 326 (1228)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHH
Confidence 9999999999999 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 337 MIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
.++..|++++....+.......|.|+|+||+|+||.+++.++|+|+||+|++||++||||||||||||++++|.|+|+|+
T Consensus 327 ~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~ 406 (1228)
T KOG0055|consen 327 TIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT 406 (1228)
T ss_pred HhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 99999887765433334556789999999999999999889999999999999999999999999999999999999999
Q ss_pred ccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 417 GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 417 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
+|+|++||.|+++++.+|+|++||+|+|+|.||++||+|||.||+|+++.+++.+|||.+++++|+..+|+||+|.+||+
T Consensus 407 ~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~ 486 (1228)
T KOG0055|consen 407 SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGER 486 (1228)
T ss_pred CceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|.+|||||||||||||||++||+||||||||||||+++|+.++++|++.++|+|+|+|||||+++++||+|+||++|+|+
T Consensus 487 g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 487 GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIV 566 (1228)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcchhccccchhhHHHHHhhcCCCCCCC--Cccc-ccccccccCCCCCCcccccccccccccccCccccCCC-CCCC
Q 041277 577 ETGSHDELIQAESGLYTSLVRLQTTTPDDNN--NATM-HSLASKSSNMDMNSTSSRRLSIVSLSSSANSFAQGRG-ASQS 652 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 652 (1133)
|.|+|+||++. .|.|.++++.|....+.+. ++.+ ......+........+..+.+ .. ........ .+..
T Consensus 567 E~G~h~ELi~~-~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~----~~--~~~~~~~~~~e~~ 639 (1228)
T KOG0055|consen 567 EQGTHDELIAL-GGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGS----NR--SNLLSVKPEGEDP 639 (1228)
T ss_pred EecCHHHHHhc-cchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCc----cc--ccccccccccccc
Confidence 99999999995 5999999999865543221 0000 000000000000000000000 00 00000000 0000
Q ss_pred cchhhcCCCchHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHH
Q 041277 653 NEEDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVF 732 (1133)
Q Consensus 653 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1133)
.++........++++++++.+|+|+++++|++++++.++..|++++.+++++..+...+++........|.++|++++++
T Consensus 640 ~~~~~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~ 719 (1228)
T KOG0055|consen 640 EEPVSEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIV 719 (1228)
T ss_pred ccccccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 00001111456799999999999999999999999999999999999999999988766555555555699999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 041277 733 TLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTI 812 (1133)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~ 812 (1133)
.++++++++|++.+++++++.++|..+|+++++++++|||+++|+ |+|.+|+.+|+..++..+++.+..+++++..+++
T Consensus 720 ~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~ 798 (1228)
T KOG0055|consen 720 SGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVII 798 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhh
Q 041277 813 AFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQ 892 (1133)
Q Consensus 813 ~~~~~~~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~ 892 (1133)
++++.|+++|+++++++++.|++++..+.+.++++....+.+++.++.+..+.|+++++|||++|++|+++.+.|.+.++
T Consensus 799 ~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~ 878 (1228)
T KOG0055|consen 799 GIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELE 878 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041277 893 GPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAV 972 (1133)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 972 (1133)
...+...++.++.++.+++++++.++.+++.+|||++|+.+|.+++.+++.+++.+.+....+++...+.+++.++..|+
T Consensus 879 ~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa 958 (1228)
T KOG0055|consen 879 KPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAA 958 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhh
Q 041277 973 GSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 973 ~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
.+++++++++|++++.++.+..++..+|+|+|+||+|+||+||+.+||+|+||+|++||++||||||||||||++.||.|
T Consensus 959 ~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR 1038 (1228)
T KOG0055|consen 959 GSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER 1038 (1228)
T ss_pred HHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999887665444445567899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccC
Q 041277 1053 FYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132 (1133)
Q Consensus 1053 ~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~d 1132 (1133)
||||++|.|.|||+||+++++++||++||+|.|||.||++||||||.||..+ +|++||++|||.||+|+||.+||+|||
T Consensus 1039 fYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyD 1117 (1228)
T KOG0055|consen 1039 FYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEE-VSEEEIIEAAKLANAHNFISSLPQGYD 1117 (1228)
T ss_pred hcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCC-CCHHHHHHHHHHhhhHHHHhcCcCccc
Confidence 9999999999999999999999999999999999999999999999999544 899999999999999999999999999
Q ss_pred C
Q 041277 1133 T 1133 (1133)
Q Consensus 1133 T 1133 (1133)
|
T Consensus 1118 T 1118 (1228)
T KOG0055|consen 1118 T 1118 (1228)
T ss_pred C
Confidence 8
No 2
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.1e-151 Score=1483.34 Aligned_cols=1101 Identities=27% Similarity=0.463 Sum_probs=920.1
Q ss_pred ccchHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 041277 17 KNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVA 96 (1133)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1133)
++.+++++|+|..+.++.+++++++++++.+++.|+++++++.++|.+... ..+..+++.+++++++.+++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~---------~~~~~~~~~~~~~~i~~~~~ 113 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG---------ENVNDIIFSLVLIGIFQFIL 113 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHHHH
Confidence 456799999999988888899999999999999999999999999976321 11223345566677788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 041277 97 CFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLV 176 (1133)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1133)
.+++.+++.+.++++..++|.++|++++++|++|||. . ++|++++++++|++.+++.++..+..++..++.+++++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~-~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~ 191 (1466)
T PTZ00265 114 SFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN-N-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIW 191 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999996 6 8999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHH
Q 041277 177 AFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQ 256 (1133)
Q Consensus 177 ~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 256 (1133)
+|+++|+|++++++++|+++++..++.+++++..++.++..+++.+.+.|+++|+++||+|+.|+.+.++|++..+...+
T Consensus 192 ~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~ 271 (1466)
T PTZ00265 192 SLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSK 271 (1466)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 257 LGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYH--------GAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEA 327 (1133)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~--------~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1133)
...+.....++..+ ..++.++++++++|+|++++..| .+++|.+++++++.+.....+..+.+.+..++++
T Consensus 272 ~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a 351 (1466)
T PTZ00265 272 YILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKS 351 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877 77778888899999999999986 5789999988877777667777778889999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHH
Q 041277 328 MAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIA 407 (1133)
Q Consensus 328 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~ 407 (1133)
.+|++||+++++.+|+.+. ...+...+. .+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||++
T Consensus 352 ~~a~~ri~~ii~~~~~~~~-~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~ 429 (1466)
T PTZ00265 352 LEATNSLYEIINRKPLVEN-NDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILK 429 (1466)
T ss_pred HHHHHHHHHHHcCCCCCCC-CCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999999998776432 111111222 24799999999998654457999999999999999999999999999999
Q ss_pred HHHhccCCCccEEEE-CCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCC------------------------
Q 041277 408 LLQRFYAPLGGEIIL-DGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE------------------------ 462 (1133)
Q Consensus 408 ~l~~~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~------------------------ 462 (1133)
+|+|+|+|++|+|++ ||+++++++.+++|++||||+|+|.||++||+|||.+|.+
T Consensus 430 lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1466)
T PTZ00265 430 LIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKN 509 (1466)
T ss_pred HHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccc
Confidence 999999999999999 5799999999999999999999999999999999999742
Q ss_pred ---------------------------------CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 463 ---------------------------------DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 463 ---------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
+.++++++++|+.+++++|+.++|+||||.+|++|.+|||||||||+
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRia 589 (1466)
T PTZ00265 510 KRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRIS 589 (1466)
T ss_pred ccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHH
Confidence 23568899999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCC--------------
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDG-------------- 573 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G-------------- 573 (1133)
|||||+++|+|||||||||+||+++++.+++.|+++. +|+|+|+||||+++++.||+|++|++|
T Consensus 590 IARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~ 669 (1466)
T PTZ00265 590 IARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGED 669 (1466)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccc
Confidence 9999999999999999999999999999999999885 489999999999999999999999986
Q ss_pred ---------------------------------eEEeecCcchhccccchhhHHHHHhhcCCCCCCCCc-cc-ccccccc
Q 041277 574 ---------------------------------QVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNA-TM-HSLASKS 618 (1133)
Q Consensus 574 ---------------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 618 (1133)
+|+|+|+|+||++..+|.|+.+++.|.........+ .. .......
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~ 749 (1466)
T PTZ00265 670 PTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSS 749 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccc
Confidence 599999999999756899999998875432111000 00 0000000
Q ss_pred cCCCCCCcc-cccccc----cccc---cccCccccCCCCCCCcc-h-----h---hcCCCchHHHHHHHhhccchHHHHH
Q 041277 619 SNMDMNSTS-SRRLSI----VSLS---SSANSFAQGRGASQSNE-E-----D---IKKLPVPSFRRLVALNAPEWKQATL 681 (1133)
Q Consensus 619 ~~~~~~~~~-~~~~~~----~~~~---~~~~~~~~~~~~~~~~~-~-----~---~~~~~~~~~~~l~~~~~~~~~~~~~ 681 (1133)
...+..... ...... .... ........+...+...+ + + ........+++++++.+++++.+++
T Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1466)
T PTZ00265 750 AYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTI 829 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHH
Confidence 000000000 000000 0000 00000000000000000 0 0 0000111345566667777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 682 GCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLS 761 (1133)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~ 761 (1133)
+++++++.+++.|+++++++.+++.++.. .........|.+++++++++.+++.+++.|+..++++++..++|.++|+
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~ 907 (1466)
T PTZ00265 830 IALSILVAGGLYPVFALLYAKYVSTLFDF--ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFE 907 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876532 1122234456777788888888999999999999999999999999999
Q ss_pred HHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041277 762 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYA 841 (1133)
Q Consensus 762 ~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~~~~~~~ 841 (1133)
+++++|++|||++++++|++++|+++|++.++..+...+..++..++.++++++++++++|++++++++++|++......
T Consensus 908 ~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 987 (1466)
T PTZ00265 908 NILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAI 987 (1466)
T ss_pred HHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999766899999999999999999999999999999999999999999999999988876555444333222
Q ss_pred HHHHHHH--HHH-------------HHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 041277 842 RRVLLKS--MSN-------------KAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAG 906 (1133)
Q Consensus 842 ~~~~~~~--~~~-------------~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1133)
..+.... ..+ ..++..++.+..++|+++|++|||+|+.|+++.++|.+..+...+...+..++.+
T Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1466)
T PTZ00265 988 RARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNS 1067 (1466)
T ss_pred HHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2121111 000 0233456778999999999999999999999999999999999998898999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCC
Q 041277 907 IGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIE 986 (1133)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 986 (1133)
...++.+.+..+..++++|+|++++..|.+++|++++++.+..+...++..+..++++++++..+++|++++++++++++
T Consensus 1068 ~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~ 1147 (1466)
T PTZ00265 1068 MLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNID 1147 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCC
Confidence 99999999999999999999999999999999999998877777767788899999999999999999999998765442
Q ss_pred CCCCCCCC---CCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC-------
Q 041277 987 PEDPEGHQ---PERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP------- 1056 (1133)
Q Consensus 987 ~~~~~~~~---~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp------- 1056 (1133)
..+..+.. ++...|.|+|+||+|+||++|+.+||+|+||+|+|||+||||||||||||||++||+|||||
T Consensus 1148 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~ 1227 (1466)
T PTZ00265 1148 VRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIV 1227 (1466)
T ss_pred CCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccc
Confidence 21111111 12345889999999999977767899999999999999999999999999999999999999
Q ss_pred -----------------------------------------------CCCeEEECCcccCCCChhHHhhccccccccccc
Q 041277 1057 -----------------------------------------------LKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTL 1089 (1133)
Q Consensus 1057 -----------------------------------------------~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~L 1089 (1133)
++|+|+|||+||+++++++||++||||||||+|
T Consensus 1228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L 1307 (1466)
T PTZ00265 1228 FKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML 1307 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc
Confidence 699999999999999999999999999999999
Q ss_pred ccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1090 FAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1090 F~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|||||||+||+| +++||||++|||.|++||||++||+||||
T Consensus 1308 F~gTIreNI~~g~~-~at~eeI~~A~k~A~l~~fI~~LP~GydT 1350 (1466)
T PTZ00265 1308 FNMSIYENIKFGKE-DATREDVKRACKFAAIDEFIESLPNKYDT 1350 (1466)
T ss_pred ccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCccccCC
Confidence 99999999999987 57999999999999999999999999998
No 3
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-142 Score=1329.19 Aligned_cols=1031 Identities=22% Similarity=0.292 Sum_probs=782.8
Q ss_pred HhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----H
Q 041277 47 GFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCW---TRTGERQATRMRAR----Y 119 (1133)
Q Consensus 47 ~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~lr~~----~ 119 (1133)
.+..| .+++.+++.+.... . .... .++++++.+++.+++..+. .+...+++.++|.. +
T Consensus 217 ~~~~P---~lL~~li~~~~~~~---~--~~~~-------g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~I 281 (1381)
T KOG0054|consen 217 GFVGP---LLLKKLILFFSEKR---L--PLNN-------GYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAI 281 (1381)
T ss_pred ccccH---HHHHHHHHHhcCCC---c--ccch-------hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHH
Confidence 44555 67788888765430 0 0011 1222333334444444332 24455666666665 5
Q ss_pred HHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041277 120 LKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPG 199 (1133)
Q Consensus 120 ~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 199 (1133)
|+|.++++...-.. . ++|+++|.+++|++++.++... +..+...++.+++++.+++..-..-++++++++.++++++
T Consensus 282 Y~K~L~ls~~~~~~-~-t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 282 YRKALRLSNSARGE-T-TVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHhhhcCchhhccC-C-CcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 66666666655442 4 8999999999999999987542 3344444444444444444333334788888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 041277 200 LMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGI 278 (1133)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 278 (1133)
.+++++.++.+++.++..|++.+.++|.++|||+||+|+||+.|.++.++.++++.+...|..+..++... ..+...+.
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888887766 32333222
Q ss_pred HHHHHHHHHHH-HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccccc
Q 041277 279 WSFLCYYGSRM-VMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENV 357 (1133)
Q Consensus 279 ~~~~~~~g~~~-v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 357 (1133)
..+.++.+. ...+.+|+..+|+.+.++..+..|+..++..+..+.++.+|.+|+.+++..++ .++........++.
T Consensus 439 --~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e-~~~~~~~~~~~~~~ 515 (1381)
T KOG0054|consen 439 --SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEE-LDPDSVERSPDEAG 515 (1381)
T ss_pred --HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cCccccccCCCCCC
Confidence 233444454 45677899899999998888899999999999999999999999999998653 33222211122334
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
+..++++|.+|+|++....+.|+||||+|++|+.+|||||.|||||||+.+|+|+++..+|+|.++|
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g------------- 582 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG------------- 582 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------
Confidence 4579999999999864445599999999999999999999999999999999999999999999999
Q ss_pred hceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 438 QMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
.++||||+||+|++||||||.||.| .+.++..++.+.|++.++++.||.|+.|+|||+|.+|||||||||+||||+|+|
T Consensus 583 siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ 661 (1381)
T KOG0054|consen 583 SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQD 661 (1381)
T ss_pred eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhcc
Confidence 5999999999999999999999986 678888999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcccCCChHHH-HHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHH
Q 041277 518 PRILLLDEATSALDSESE-RVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~-~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 596 (1133)
+||+|||||+||+|+|+. +.+.++++...++||+|+|||+++.+++||+|++|+||+|.+.|+++||++ ....|.++.
T Consensus 662 adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~-~~~~~~~l~ 740 (1381)
T KOG0054|consen 662 ADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK-SGGDFAELA 740 (1381)
T ss_pred CCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh-cchhHHHHh
Confidence 999999999999999965 566778878889999999999999999999999999999999999999997 577788774
Q ss_pred HhhcCCCCCCCCcccccccccccCCCCCCcccccccccccccccCccccCCC-CCCCcchhhcCCCchHHHHHHHhhccc
Q 041277 597 RLQTTTPDDNNNATMHSLASKSSNMDMNSTSSRRLSIVSLSSSANSFAQGRG-ASQSNEEDIKKLPVPSFRRLVALNAPE 675 (1133)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ 675 (1133)
.......+.+......+ ..... ..... +........ .+....... ..+..++++.+.+...++.+..|.+..
T Consensus 741 ~~~~~~~~~~~~~~~~~-~~~~~---~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~ 813 (1381)
T KOG0054|consen 741 HEEESEQEEEASEKDLE-SGESS---RESES--RSLESLSSE-EEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAA 813 (1381)
T ss_pred hccchhhcccccccccc-ccccc---cchhh--hhhhhhccc-ccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhc
Confidence 33222211110000000 00000 00000 000000000 000000000 000011222244555555555555442
Q ss_pred hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 676 WKQ--ATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTK 753 (1133)
Q Consensus 676 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1133)
+.. ..+.+++.+....+.....+|++.|.+.-...... ......|..+|.+++++..++..++.+.+...+.++++
T Consensus 814 ~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~--~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~ 891 (1381)
T KOG0054|consen 814 GGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT--TVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASR 891 (1381)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22223344444455555566666665432111000 02345688899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041277 754 RIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQP 833 (1133)
Q Consensus 754 ~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~p 833 (1133)
+||++|+++++|.||+||| .||+|||+|||++|++.+|..++..+..+++.++.++++++++.+..|+ ++++++|
T Consensus 892 ~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~---fli~~~p 966 (1381)
T KOG0054|consen 892 KLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPW---FLIAIIP 966 (1381)
T ss_pred HHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHH---HHHHHHH
Confidence 9999999999999999999 6999999999999999999999999999999999999999988888775 5566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 041277 834 LVIICFYARRVLLKSMSNKAIKA----QAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGL 909 (1133)
Q Consensus 834 l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1133)
+.+++++++.+|.+. +|+.++. ++++.+|++|+++|+.|||||+.|++|.+++.+.+|.+.+..+-.... ..|.
T Consensus 967 l~v~~~~~~~~Y~~t-sReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a-~RWl 1044 (1381)
T KOG0054|consen 967 LGVIYYFVQRYYLAT-SRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISA-NRWL 1044 (1381)
T ss_pred HHHHHHHHHHHHHHH-hHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHH-HHHH
Confidence 777777766666654 5555444 568899999999999999999999999999999999988765543322 2333
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 041277 910 AFSQ-SLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPE 988 (1133)
Q Consensus 910 ~~~~-~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 988 (1133)
++.. .+..+..+.+.. .+.+...+..++|.+...+.|.......+.-+.....++++.+.|+||+.++.+.+++.+.+
T Consensus 1045 a~Rle~ig~~~v~~~al-~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~ 1123 (1381)
T KOG0054|consen 1045 AVRLELLGNLVVLIAAL-FAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLE 1123 (1381)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCC
Confidence 3332 222222222222 22222222267888888899999999999999999999999999999999999976662222
Q ss_pred CCCC--CCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCc
Q 041277 989 DPEG--HQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR 1066 (1133)
Q Consensus 989 ~~~~--~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~ 1066 (1133)
.++. ++..|.+|+|+|+|++.||.++ .++|||||||+|+||||||||||||||||||+++|+|+.+|.+|+|.|||+
T Consensus 1124 ~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1124 IEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGV 1202 (1381)
T ss_pred CcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCe
Confidence 2122 1223467999999999999532 257999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1067 DIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1067 dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
||+++++++||+++++|||||+||+||+|.||++- ++++|+|||+|+|+|+++++|+++|+|+|+
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf--~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~ 1267 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF--DEYSDDEIWEALERCQLKDVVSSLPGGLDS 1267 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCceecCccccccCcc--cccCHHHHHHHHHHhChHHHHhhCCcCCCc
Confidence 99999999999999999999999999999999532 689999999999999999999999999985
No 4
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-133 Score=1327.86 Aligned_cols=984 Identities=18% Similarity=0.246 Sum_probs=735.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 105 TRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRL 184 (1133)
Q Consensus 105 ~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (1133)
.+.+.++...++..+|+|+++++..++++ . ++|+++|++++|++++++.+. .+..++..++.+++++++++..-...
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~-~-~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~ 442 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKK-F-TSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVA 442 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC-C-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888889999999999999985 6 899999999999999999874 45556666666555555544432223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 185 AIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLA 264 (1133)
Q Consensus 185 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 264 (1133)
++++++++.+++++..++.++.++.+++.++..+++.+.+.|.++||++||+|+||+.+.+++++.++++.+...+....
T Consensus 443 ~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~ 522 (1622)
T PLN03130 443 SLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLL 522 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445566666778888899999999999999999999999999999999999999999999988887777666665
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 041277 265 KGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPK 343 (1133)
Q Consensus 265 ~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 343 (1133)
.++... ...+. ..+.++++|++.+..|.+|+|.+++++.++..+..|+..++..+..+.++++|++||.++++.++.
T Consensus 523 ~~~~~~~~~~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~ 600 (1622)
T PLN03130 523 SAFNSFILNSIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEER 600 (1622)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 554433 11111 134456788999999999999999999888888899999888999999999999999999976533
Q ss_pred CCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc-cEEEE
Q 041277 344 IDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG-GEIIL 422 (1133)
Q Consensus 344 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~-G~i~~ 422 (1133)
.+... .......+.|+++|++|+|++++++++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|.+
T Consensus 601 ~~~~~---~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l 677 (1622)
T PLN03130 601 VLLPN---PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI 677 (1622)
T ss_pred ccccC---CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE
Confidence 21111 001112346999999999986444579999999999999999999999999999999999999999 99985
Q ss_pred CCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 423 DGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 423 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
|++|+||+|+||+|++||||||.||.+ .+++++.++++.|+++++++.+|+|++|.|||+|.+|||
T Consensus 678 -------------~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSG 743 (1622)
T PLN03130 678 -------------RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISG 743 (1622)
T ss_pred -------------cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCH
Confidence 448999999999999999999999987 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHH-HHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCc
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVV-QEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i-~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 581 (1133)
||||||+||||++++|+|+||||||||||+++++.+ .++++...+++|+|+|||+++.++.||+|++|++|+|+++|+|
T Consensus 744 GQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~ 823 (1622)
T PLN03130 744 GQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTY 823 (1622)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999999998766 5677777789999999999999999999999999999999999
Q ss_pred chhccccchhhHHHHHhhcCCCCCCCCcccccccccccCCCCCCcccccccccccccccCccccCCCCCCCcchhhcCCC
Q 041277 582 DELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKSSNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLP 661 (1133)
Q Consensus 582 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1133)
+|+++ .++.|++++..+...++..+.+........ .. ...... ......... ..............+++.+..+
T Consensus 824 ~eL~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~g 897 (1622)
T PLN03130 824 EELSN-NGPLFQKLMENAGKMEEYVEENGEEEDDQT-SS-KPVANG--NANNLKKDS-SSKKKSKEGKSVLIKQEERETG 897 (1622)
T ss_pred HHHHh-cchhHHHHHHhccccccccccccccccccc-cc-cccccc--ccccccccc-cccccccccchhhhhHHHHhcC
Confidence 99987 578888887654322111110000000000 00 000000 000000000 0000000000000111111223
Q ss_pred chHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 041277 662 VPSFRRLVALNAP--EWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINII 739 (1133)
Q Consensus 662 ~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1133)
...+..+..|.+. .++...+.+++.++..++....++|+..|.+..... ......|+.+|++++++..++.++
T Consensus 898 ~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~-----~~~~~~~~~i~~~l~~~~~i~~~~ 972 (1622)
T PLN03130 898 VVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK-----THGPLFYNLIYALLSFGQVLVTLL 972 (1622)
T ss_pred ccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-----CCchhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444332 122222222333333444444556666555432110 112344666788888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 740 QHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLF 819 (1133)
Q Consensus 740 ~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 819 (1133)
+.+++.+.+.+++.++|.+++++++++|++||| ++|+|+|+||+++|++.++..++..+..++..++.+++.++++++
T Consensus 973 ~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~ 1050 (1622)
T PLN03130 973 NSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGI 1050 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 689999999999999999999999999999999999988888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHH
Q 041277 820 IAWRLALVMIAVQPLVIICFYAR---RVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRR 896 (1133)
Q Consensus 820 ~~w~l~lv~l~~~pl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~ 896 (1133)
++|... ++++|+.+++.... .+..++..+......+++.+++.|+++|++|||+|+.++++.+++.+..+...+
T Consensus 1051 ~~~~~~---~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~ 1127 (1622)
T PLN03130 1051 VSTISL---WAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIR 1127 (1622)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 887433 33344433333222 233333444445556788999999999999999999999888888777766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041277 897 ESIRQSWYAGIGLAFSQSLASCTWALDFWYG-GRLIADGY-IS-----SKALFETFMILVSTGRVIADAGSMTTDIAKGS 969 (1133)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~g~-~t-----~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1133)
..........+....... ...++++++ ...+..+. .+ .+.+..++.+......++..+......+++.+
T Consensus 1128 ~~~~~~~~~~wl~~~l~~----~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~ 1203 (1622)
T PLN03130 1128 FTLVNMSSNRWLAIRLET----LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 1203 (1622)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222111111111111 112222333 33333321 11 23333444555566667777778888999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCC--CCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHH
Q 041277 970 DAVGSVFAVMDRYTKIEPEDPEGHQP--ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTII 1047 (1133)
Q Consensus 970 ~s~~ri~~~l~~~~~~~~~~~~~~~~--~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~ 1047 (1133)
.+++|+.++++.+++.+...++..++ .+.+|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||||||+
T Consensus 1204 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl 1282 (1622)
T PLN03130 1204 NAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSML 1282 (1622)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999999998665432111111111 1346899999999999632 24699999999999999999999999999999
Q ss_pred HHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhc
Q 041277 1048 GLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGL 1127 (1133)
Q Consensus 1048 ~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~L 1127 (1133)
++|+|||||++|+|+|||+||+++++++||++|++|||||+||+|||||||++++ +++|||+|+||++|+++|||++|
T Consensus 1283 ~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~tdeei~~Al~~a~l~~~I~~l 1360 (1622)
T PLN03130 1283 NALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHNDADLWESLERAHLKDVIRRN 1360 (1622)
T ss_pred HHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC--CCCHHHHHHHHHHcCcHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999885 57999999999999999999999
Q ss_pred ccccCC
Q 041277 1128 NEGYDT 1133 (1133)
Q Consensus 1128 P~G~dT 1133 (1133)
|+||||
T Consensus 1361 p~GLdt 1366 (1622)
T PLN03130 1361 SLGLDA 1366 (1622)
T ss_pred ccccCc
Confidence 999997
No 5
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.5e-132 Score=1318.11 Aligned_cols=1040 Identities=19% Similarity=0.238 Sum_probs=754.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 38 LGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRA 117 (1133)
Q Consensus 38 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 117 (1133)
++.++.++..++....|++++.+++.+... +. .. ....++..+++..++..++.....+...+.+.++...++.
T Consensus 305 ~~~~~~i~~~~~~~~~P~ll~~li~~~~~~---~~-~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~ 378 (1495)
T PLN03232 305 LGGIFKIGHDLSQFVGPVILSHLLQSMQEG---DP-AW--VGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVA 378 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---Cc-cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555557888999876432 11 00 0111111111111112222111122235677888888888
Q ss_pred HHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHH
Q 041277 118 RYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVG---FPFVVL 194 (1133)
Q Consensus 118 ~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~---l~~~~~ 194 (1133)
.+|+|+++++..++++ . ++|+++|++++|++++++.+ ..+..++..++.+++++++++ +.++++. ++++.+
T Consensus 379 ~i~~k~l~l~~~~~~~-~-~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~~v~~l 452 (1495)
T PLN03232 379 AIFHKSLRLTHEARKN-F-ASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQLGVASLFGSLILFL 452 (1495)
T ss_pred HHHHHHhcCChhhcCC-C-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHH
Confidence 9999999999999985 6 89999999999999999986 344455555544444443332 2233322 223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 041277 195 LVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNG 273 (1133)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 273 (1133)
++++..++.++.++..++.++..+++.+.+.|.++||++||+|+||+.+.+++++.++++.+...+.....++... ...
T Consensus 453 ~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~ 532 (1495)
T PLN03232 453 LIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNS 532 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677888999999999999999999999999999999999999999999999999888887777666554433 111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc
Q 041277 274 VTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEI 353 (1133)
Q Consensus 274 ~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~ 353 (1133)
. ...+.++++|++++.+|.+|+|.+++++.++.....|+..++..+..+.++.+|++||.++++.+++.+... ..
T Consensus 533 ~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~---~~ 607 (1495)
T PLN03232 533 I--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN---PP 607 (1495)
T ss_pred H--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc---CC
Confidence 1 122334678999999999999999999988888889999999999999999999999999998654322111 11
Q ss_pred cccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH
Q 041277 354 LENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 354 ~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~ 433 (1133)
.....+.|+++|++|+|++++++++|+|+||+|++||+++||||||||||||+++|+|+|+|++|.+.
T Consensus 608 ~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------ 675 (1495)
T PLN03232 608 LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------ 675 (1495)
T ss_pred cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------
Confidence 11123479999999999864446799999999999999999999999999999999999999998763
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
++|++|+||+|+||+|++||||||.||.+ .+++++.++++.|+++++++.+|+|++|.|||+|.+|||||||||+||||
T Consensus 676 ~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 754 (1495)
T PLN03232 676 VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARA 754 (1495)
T ss_pred EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHH
Confidence 24678999999999999999999999985 68899999999999999999999999999999999999999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHH-HHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhh
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQ-EALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLY 592 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~-~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 592 (1133)
++++|+|+||||||||||+++++.+. ++++...+++|+|+||||++.++.||+|++|++|+++++|+|+|+++ .++.|
T Consensus 755 ly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~-~~~~~ 833 (1495)
T PLN03232 755 VYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK-SGSLF 833 (1495)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh-cchhH
Confidence 99999999999999999999988765 55776678999999999999999999999999999999999999997 67889
Q ss_pred HHHHHhhcCCCCCCCCcccccccccccCCCCCCcccccccccccccccCccccCCCCCCCcchhhcCCCchHHHHHHHhh
Q 041277 593 TSLVRLQTTTPDDNNNATMHSLASKSSNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLPVPSFRRLVALN 672 (1133)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 672 (1133)
.++++.+...++..+..+...... ...... ............. ..........+++....+...++.+..|.
T Consensus 834 ~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~g~v~~~vy~~y~ 905 (1495)
T PLN03232 834 KKLMENAGKMDATQEVNTNDENIL------KLGPTV-TIDVSERNLGSTK-QGKRGRSVLVKQEERETGIISWNVLMRYN 905 (1495)
T ss_pred HHHHHhcccccccccccccccccc------cccccc-ccccccccccccc-ccccchhhhhhHHHHhcCcccHHHHHHHH
Confidence 988876543211111000000000 000000 0000000000000 00000000001111122333444455554
Q ss_pred ccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 673 APEW--KQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEH 750 (1133)
Q Consensus 673 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1133)
+... +...+.+++.++..++.....+|+..|.+.. .........|+.+|++++++..++.+++.+++.+.+.+
T Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~-----~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~ 980 (1495)
T PLN03232 906 KAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQS-----TPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLH 980 (1495)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4322 2222222222222333333334444433211 00011234577788888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 041277 751 LTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIA 830 (1133)
Q Consensus 751 ~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~ 830 (1133)
++.++|++++++++++|++||| ++++|+++||+++|++.+++.++..+..++..++.++++++++++++|... ++
T Consensus 981 ~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~---~~ 1055 (1495)
T PLN03232 981 AAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISL---WA 1055 (1495)
T ss_pred HHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 9999999999999999999998 689999999999999999999999999999988888888887777775433 23
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 041277 831 VQPLVIICFYAR---RVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGI 907 (1133)
Q Consensus 831 ~~pl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1133)
++|+.+++.... .+..++..+......+++.+++.|+++|++|||+|+.++++.+++.+..+...+..........
T Consensus 1056 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1134 (1495)
T PLN03232 1056 IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNR- 1134 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 334433333222 2233344455566667889999999999999999999999988888877766554433222211
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHh-cCCC----C-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q 041277 908 GLAFSQSLASCTWALDFWY-GGRLIA-DGYI----S-SKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMD 980 (1133)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~-g~~l~~-~g~~----t-~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~ 980 (1133)
+..+.. ..+. .+++++ +...+. .+.+ + .+.+..++.+......++..+...+.+++.++.+++|+.++++
T Consensus 1135 wl~~~~--~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~ 1211 (1495)
T PLN03232 1135 WLTIRL--ETLG-GVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYID 1211 (1495)
T ss_pred HHHHHH--HHHH-HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111 1111 222333 333333 2332 1 1223334555666677788888899999999999999999998
Q ss_pred cCCCCCCCCCCCCCC--CCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCC
Q 041277 981 RYTKIEPEDPEGHQP--ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK 1058 (1133)
Q Consensus 981 ~~~~~~~~~~~~~~~--~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~ 1058 (1133)
.+++.+.......++ .+..|+|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||||||+++|+|+|+|++
T Consensus 1212 ~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~ 1290 (1495)
T PLN03232 1212 LPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290 (1495)
T ss_pred CCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence 765432211111111 2346899999999999532 2469999999999999999999999999999999999999999
Q ss_pred CeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1059 GDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1059 G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+|||+||+++++++||++|++|||||+||+|||||||++++ +++|||+|+|+++|+++|||+++|+||||
T Consensus 1291 G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sdeei~~al~~a~l~~~I~~lp~GLdt 1363 (1495)
T PLN03232 1291 GRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHNDADLWEALERAHIKDVIDRNPFGLDA 1363 (1495)
T ss_pred ceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCHHHHHHHHHHcCCHHHHHhCcCCCCc
Confidence 99999999999999999999999999999999999999999874 58999999999999999999999999997
No 6
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.3e-128 Score=1284.45 Aligned_cols=1052 Identities=16% Similarity=0.170 Sum_probs=779.5
Q ss_pred HHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 45 GDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVL 124 (1133)
Q Consensus 45 ~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 124 (1133)
+..++....|++++.+++.+.... .. . .....++..++++.++..++.....+...+.+.++...++..+|+|++
T Consensus 328 ~~~~~~~~~P~ll~~li~~~~~~~--~~-~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L 402 (1522)
T TIGR00957 328 IHDLMMFIGPQILSLLIRFVNDPM--AP-D--WQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKAL 402 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--cc-c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444568889998764321 10 0 011111222222233333443333444567889999999999999999
Q ss_pred hCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 125 RQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGR 204 (1133)
Q Consensus 125 ~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 204 (1133)
+++...+++ . ++|+++|++++|++++.+.. ..+..++..++.+++++++++..-...+++.++++++++++..++.+
T Consensus 403 ~l~~~~~~~-~-~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~ 479 (1522)
T TIGR00957 403 VITNSARKS-S-TVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAM 479 (1522)
T ss_pred hCChhhcCC-C-CHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999985 6 89999999999999998865 34455555555555555444433333456666777788888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 205 TLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIGSNGVTFGIWSFLCY 284 (1133)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (1133)
++++.+++.++..+++.+.+.|.++||++||+|+||+.+.+++++.++++.+...+......+......... ..+.++.
T Consensus 480 ~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 558 (1522)
T TIGR00957 480 KTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTP-FLVALIT 558 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999998888776666655544332111111 1122233
Q ss_pred HHHHHHHh--cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccc-cccccE
Q 041277 285 YGSRMVMY--HGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILE-NVLGEV 361 (1133)
Q Consensus 285 ~g~~~v~~--~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~-~~~~~i 361 (1133)
++.+.+.. +.++++.+++.+.++.....|+..++..+..+.++.+|.+||.++++.+++.+ ......... ...+.|
T Consensus 559 f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~-~~~~~~~~~~~~~~~i 637 (1522)
T TIGR00957 559 FAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEP-DSIERRTIKPGEGNSI 637 (1522)
T ss_pred HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc-ccccccccCCCCCCcE
Confidence 45566653 56899999988877777888999999999999999999999999998654321 110001111 112379
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +|+|
T Consensus 638 ~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~y 703 (1522)
T TIGR00957 638 TVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAY 703 (1522)
T ss_pred EEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEE
Confidence 999999999753 34699999999999999999999999999999999999999999999997 5999
Q ss_pred EecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 041277 442 VSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRIL 521 (1133)
Q Consensus 442 v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~il 521 (1133)
|+|+||+|++||+|||.+|.+ .++++..++++.+++.++++.+|+|++|.+|++|.+|||||||||+||||++++|+|+
T Consensus 704 v~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il 782 (1522)
T TIGR00957 704 VPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782 (1522)
T ss_pred EcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999875 4567778888889999999999999999999999999999999999999999999999
Q ss_pred EEeCcccCCChHHHHHHHHHHHH---HhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHh
Q 041277 522 LLDEATSALDSESERVVQEALDK---AVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 522 llDE~ts~lD~~~~~~i~~~l~~---~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
|||||||+||+++++.+.+.+.+ ..+++|+|+|||+++.+..||+|++|++|+++++|+++++.+ +++.|.++...
T Consensus 783 lLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~-~~~~~~~l~~~ 861 (1522)
T TIGR00957 783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ-RDGAFAEFLRT 861 (1522)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh-cchhHHHHHHh
Confidence 99999999999999999988853 456899999999999999999999999999999999999987 57788888764
Q ss_pred hcCCCCCCCCccc---c-cccccccC--C---CC---CCccccc----cccccccc-----ccCccccCCCC-C-C-Ccc
Q 041277 599 QTTTPDDNNNATM---H-SLASKSSN--M---DM---NSTSSRR----LSIVSLSS-----SANSFAQGRGA-S-Q-SNE 654 (1133)
Q Consensus 599 ~~~~~~~~~~~~~---~-~~~~~~~~--~---~~---~~~~~~~----~~~~~~~~-----~~~~~~~~~~~-~-~-~~~ 654 (1133)
+....+.+..+.. . ........ . +. .+....+ ........ +..+....... . . ..+
T Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1522)
T TIGR00957 862 YAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLME 941 (1522)
T ss_pred hccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHH
Confidence 4322111000000 0 00000000 0 00 0000000 00000000 00000000000 0 0 001
Q ss_pred hhhcCCCchHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHH
Q 041277 655 EDIKKLPVPSFRRLVALNAP-EWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFT 733 (1133)
Q Consensus 655 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1133)
++.+..+...+..+..|.+. .+...++.+++.++..++....++|++.|.+....... ......|..+|++++++.
T Consensus 942 ~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~---~~~~~~~~~iy~~l~i~~ 1018 (1522)
T TIGR00957 942 ADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGT---QNNTSLRLSVYGALGILQ 1018 (1522)
T ss_pred HHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC---CCCcchHHHHHHHHHHHH
Confidence 11112222233334444332 22222222333333444445556666666542111000 111234556788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 041277 734 LVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIA 813 (1133)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~ 813 (1133)
.++.+++.+++.+++.++++++|++++++++++|++||| ++++|+++|||++|++.++..++..+..++..++.+++.
T Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~ 1096 (1522)
T TIGR00957 1019 GFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGA 1096 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999999999998 589999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhc
Q 041277 814 FTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQG 893 (1133)
Q Consensus 814 ~~~~~~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~ 893 (1133)
++++++.+|.+++++++++++.++...++.+..++..+...+..+++.+++.|+++|++|||+|+.|+++.+++.+..+.
T Consensus 1097 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~ 1176 (1522)
T TIGR00957 1097 LIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDE 1176 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHH
Confidence 98888888876665555555444444444444555555666677889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041277 894 PRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIA-DGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAV 972 (1133)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 972 (1133)
..+..........+.......+.. +++++.++..+. .|.+++|.+.+++.+......++..+...+.+++.++.|+
T Consensus 1177 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~ 1253 (1522)
T TIGR00957 1177 NQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAV 1253 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877765544444433333333322 233344444443 5789999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCCC--CCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHH
Q 041277 973 GSVFAVMDRYTKIEPEDPEGHQP--ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLI 1050 (1133)
Q Consensus 973 ~ri~~~l~~~~~~~~~~~~~~~~--~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL 1050 (1133)
+|+.++++.+++.+...+...++ .+..|+|+|+||+|+|+++. ++||+||||+|+|||+||||||||||||||+++|
T Consensus 1254 eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL 1332 (1522)
T TIGR00957 1254 ERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGL 1332 (1522)
T ss_pred HHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 99999997655432111111111 13468999999999997542 3699999999999999999999999999999999
Q ss_pred hhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1051 ERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1051 ~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+|||||++|+|+|||+||+++++++||++|++|||||+||+|||||||++. ++++|||||+|+++|+++|||++||+|
T Consensus 1333 ~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~~~sdeei~~al~~a~l~~~I~~lp~G 1410 (1522)
T TIGR00957 1333 FRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--SQYSDEEVWWALELAHLKTFVSALPDK 1410 (1522)
T ss_pred hcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--cCCCHHHHHHHHHHcCcHHHHhhCccC
Confidence 999999999999999999999999999999999999999999999999754 258999999999999999999999999
Q ss_pred cCC
Q 041277 1131 YDT 1133 (1133)
Q Consensus 1131 ~dT 1133 (1133)
|||
T Consensus 1411 Ldt 1413 (1522)
T TIGR00957 1411 LDH 1413 (1522)
T ss_pred CCc
Confidence 997
No 7
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=8.3e-123 Score=1223.95 Aligned_cols=1056 Identities=17% Similarity=0.204 Sum_probs=772.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 38 LGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRA 117 (1133)
Q Consensus 38 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 117 (1133)
++++..++..++....|++++.+++.+... +. .+ .....+.+.+++..++..++.....+...+.+.++...++.
T Consensus 248 ~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~---~~-~~-~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~ 322 (1560)
T PTZ00243 248 WQIPFKLLSDVCTLTLPVLLKYFVKFLDAD---NA-TW-GRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNA 322 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---Cc-ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555556788888865322 11 11 10111112222333344445555556667778888888899
Q ss_pred HHHHHHHhCCchhhcc-CCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 041277 118 RYLKAVLRQDVGYFDL-HVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLV 196 (1133)
Q Consensus 118 ~~~~~ll~~~~~~f~~-~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~ 196 (1133)
.+|+|+++++...+.. +. ++|+++|++++|++++.+++.. +..++..++.+++++++++.+..+.++++++++++.+
T Consensus 323 ~if~K~l~ls~~~~~~~~~-~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~ 400 (1560)
T PTZ00243 323 LIFEKCFTISSKSLAQPDM-NTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTL 400 (1560)
T ss_pred HHHHHHHhCChhhhCCCCC-CHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999877752 13 7899999999999999999844 5667777788888788777777778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 041277 197 IPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVT 275 (1133)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 275 (1133)
++..++.++..+.+++.++..+++.+.+.|.++|||+||+++||+.+.+++++.++++.+...+......+... .....
T Consensus 401 pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p 480 (1560)
T PTZ00243 401 PLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATP 480 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887777766655444 22222
Q ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----CCCCC-
Q 041277 276 FGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKI-----DSDSM- 349 (1133)
Q Consensus 276 ~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~-----~~~~~- 349 (1133)
.+. .++.++++.+..+.+|++.+|+++.++..+..|+..++..+..+.++.+|++||.++++.++.. +..+.
T Consensus 481 ~l~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~ 558 (1560)
T PTZ00243 481 TLM--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYW 558 (1560)
T ss_pred HHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhc
Confidence 222 2234567788889999999999999999999999999999999999999999999999764310 00000
Q ss_pred -------cc-c--------------c-----------------------------cccccccEEEEEEEEEcCCC-----
Q 041277 350 -------EG-E--------------I-----------------------------LENVLGEVEFKCVQFAYPSR----- 373 (1133)
Q Consensus 350 -------~~-~--------------~-----------------------------~~~~~~~i~~~~v~~~y~~~----- 373 (1133)
.. . + .....+.+.++|++|+++..
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1560)
T PTZ00243 559 REQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHI 638 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccc
Confidence 00 0 0 00011346777777764310
Q ss_pred --------------------------------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEE
Q 041277 374 --------------------------------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII 421 (1133)
Q Consensus 374 --------------------------------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~ 421 (1133)
.++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~ 718 (1560)
T PTZ00243 639 VEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW 718 (1560)
T ss_pred ccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 124589999999999999999999999999999999999999999998
Q ss_pred ECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 422 LDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 422 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
++ ++||||||+||+|++||+|||.++.+ .+.+++.++++.++++++++.+|+|++|.+|++|.+||
T Consensus 719 ~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LS 784 (1560)
T PTZ00243 719 AE-------------RSIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLS 784 (1560)
T ss_pred EC-------------CeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCC
Confidence 64 37999999999999999999999864 34566778888899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHH-HHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecC
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE-ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 580 (1133)
|||||||+||||++++|+|+|||||||+||+++++.+.+ ++....+|+|+|+|||+++.+..||+|++|++|+++++|+
T Consensus 785 GGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~ 864 (1560)
T PTZ00243 785 GGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGS 864 (1560)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999998777654 4555557899999999999999999999999999999999
Q ss_pred cchhccccchhhHHHHHhhcCCCCCCCCcccccccccccCCCC-CCcccccccccccccccCccccCCCCCCCcchhhcC
Q 041277 581 HDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKSSNMDM-NSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKK 659 (1133)
Q Consensus 581 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1133)
++++++ ++.|..+........+..+.....+.......... ......................+.......+++.+.
T Consensus 865 ~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 942 (1560)
T PTZ00243 865 SADFMR--TSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKA 942 (1560)
T ss_pred HHHHHh--ChHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhhhHHHHh
Confidence 999986 34577776543221110000000000000000000 000000000000000000000000000000111111
Q ss_pred CCchHHHHHHHhhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHH
Q 041277 660 LPVPSFRRLVALNAPE--WKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVIN 737 (1133)
Q Consensus 660 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1133)
.+...++.+..|.+.. +......+++.++..++.....+|++.|..... ......|+.+|+++.++..++.
T Consensus 943 ~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~-------~~~~~~~l~~y~~~~~~~~~~~ 1015 (1560)
T PTZ00243 943 SGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSF-------KLSAATYLYVYLGIVLLGTFSV 1015 (1560)
T ss_pred cCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------CCCcccHHHHHHHHHHHHHHHH
Confidence 2222333333333321 111111111122222333334444544432111 1112345666766666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 738 IIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMG 817 (1133)
Q Consensus 738 ~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 817 (1133)
+++.+.....+.+.++++|+++|++++++|++||| ++++|+++|||++|++.++..++..+..++..++.+++.++++
T Consensus 1016 ~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~ 1093 (1560)
T PTZ00243 1016 PLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVT 1093 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888999999999999999999999 5899999999999999999999999999999999999999888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcH
Q 041277 818 LFIAWRLALVMIAVQPLVIICFY---ARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGP 894 (1133)
Q Consensus 818 ~~~~w~l~lv~l~~~pl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~ 894 (1133)
++.+|.+.+ +++|+.+++.. ++.+..+...+......+++.+++.|+++|++|||+|+.++++.++|.+..+.+
T Consensus 1094 ~~~~p~~~~---~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~ 1170 (1560)
T PTZ00243 1094 SASQPFVLV---ALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVV 1170 (1560)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 888885433 33444333332 333334444445556677889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041277 895 RRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRL--IADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAV 972 (1133)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l--~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 972 (1133)
.+..........+......++..+..+++.+++... ...+.+++|.+..++.+......++..+...+.+++.++.++
T Consensus 1171 ~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~ 1250 (1560)
T PTZ00243 1171 YSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSV 1250 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766555554544444544444444444444433 334557888888888888888899999999999999999999
Q ss_pred HHHHHHhccCCCCC-CC-------------------------C--CCCCCC-CCCcccEEEEeEEEECCCCCCCccccCc
Q 041277 973 GSVFAVMDRYTKIE-PE-------------------------D--PEGHQP-ERITGNIELQNVHFAYPARPDVMIFEGF 1023 (1133)
Q Consensus 973 ~ri~~~l~~~~~~~-~~-------------------------~--~~~~~~-~~~~g~I~f~nVsF~Y~~~~~~~vL~~i 1023 (1133)
+|+.++++..++.+ ++ + ++...+ ++..|.|+|+||+|+|+++ .++||+||
T Consensus 1251 eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~v 1329 (1560)
T PTZ00243 1251 ERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGV 1329 (1560)
T ss_pred HHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecc
Confidence 99999997543211 00 0 000001 1235899999999999643 34699999
Q ss_pred cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCC
Q 041277 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS 1103 (1133)
Q Consensus 1024 sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~ 1103 (1133)
||+|+|||+||||||||||||||+++|+|||+|++|+|+|||+||+++++++||++|++|||||+||+|||||||+++
T Consensus 1330 sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~-- 1407 (1560)
T PTZ00243 1330 SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF-- 1407 (1560)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1104 DEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1104 ~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++++|+|||+||++|+++|||++||+||||
T Consensus 1408 ~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt 1437 (1560)
T PTZ00243 1408 LEASSAEVWAALELVGLRERVASESEGIDS 1437 (1560)
T ss_pred cCCCHHHHHHHHHHCCChHHHhhCcccccc
Confidence 368999999999999999999999999997
No 8
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.2e-119 Score=1194.43 Aligned_cols=1042 Identities=17% Similarity=0.204 Sum_probs=745.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 041277 51 PLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGY 130 (1133)
Q Consensus 51 p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~ 130 (1133)
...|++++.+++.+.... ... ......+++.+++..++..++.....+...+.+.++...+...+|+|+++++...
T Consensus 97 ~~~P~ll~~li~~~~~~~--~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~ 172 (1490)
T TIGR01271 97 AVQPLLLGRIIASYDPFN--APE--REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRV 172 (1490)
T ss_pred HHHHHHHHHHHHHhccCC--CCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 344467888888763210 000 0011112222223333444444455555666777777777778899999999999
Q ss_pred hccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 131 FDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLA 210 (1133)
Q Consensus 131 f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 210 (1133)
+++ . ++|+++|++++|++++.+++... ..++..++.+++++++++...++.+++.++++++++++..++.+++.+.+
T Consensus 173 ~~~-~-~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~ 249 (1490)
T TIGR01271 173 LDK-I-STGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYR 249 (1490)
T ss_pred hcC-C-CHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 985 6 89999999999999999987643 44556666666667777666667888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 211 RKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMV 290 (1133)
Q Consensus 211 ~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v 290 (1133)
++.++..+++.+.+.|.++|||+||+|+||+.+.+++++.++++.+...+......+....... ....+.++.++++.+
T Consensus 250 ~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~y~~ 328 (1490)
T TIGR01271 250 DKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFF-SGFFVVFLSVVPYAL 328 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888877776665443332222 222334556667766
Q ss_pred HhcCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEE
Q 041277 291 MYHGAQGGTVFAVGASIAVGGLALG-AGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFA 369 (1133)
Q Consensus 291 ~~~~~t~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 369 (1133)
..+ ++++.+|+++.++..+..++. .++..+..+.++.+|++||.++++.++..+ .. . ......++++|++|+
T Consensus 329 ~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~-~~---~--~~~~~~i~~~~~~f~ 401 (1490)
T TIGR01271 329 IKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKT-LE---Y--NLTTTEVEMVNVTAS 401 (1490)
T ss_pred hCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc-cc---c--cCCCCceEEecceEe
Confidence 544 688999998877777767764 577788999999999999999997653211 11 0 011235899999999
Q ss_pred cCCCC-------------------------------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 370 YPSRP-------------------------------ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 370 y~~~~-------------------------------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G 481 (1490)
T TIGR01271 402 WDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEG 481 (1490)
T ss_pred cCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 95310 13589999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCC
Q 041277 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 419 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 498 (1133)
+|.++| +|+||+|+||+|++||+|||.||.+ .+.++..++++.+++.++++.+|+|++|.+|++|.
T Consensus 482 ~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~ 547 (1490)
T TIGR01271 482 KIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGI 547 (1490)
T ss_pred eEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCcCC
Confidence 999998 5999999999999999999999864 44556677778888999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHH-HHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEe
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE-ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 577 (1133)
+|||||||||+||||++++|+|+||||||||||+++++.+.+ ++.+..+++|+|+|||+++.+..||+|++|++|++++
T Consensus 548 ~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~ 627 (1490)
T TIGR01271 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYF 627 (1490)
T ss_pred CcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999887 5677778999999999999998999999999999999
Q ss_pred ecCcchhccccchhhHHHHHhhcC------CC--------------C--C-----CCC------ccccc--ccc------
Q 041277 578 TGSHDELIQAESGLYTSLVRLQTT------TP--------------D--D-----NNN------ATMHS--LAS------ 616 (1133)
Q Consensus 578 ~g~~~~l~~~~~~~~~~~~~~~~~------~~--------------~--~-----~~~------~~~~~--~~~------ 616 (1133)
.|+++++.+ .++.|.+.+..... .. + . ++. ++... ...
T Consensus 628 ~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1490)
T TIGR01271 628 YGTFSELQA-KRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIIL 706 (1490)
T ss_pred EcCHHHHHh-cChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999986 45556555531000 00 0 0 000 00000 000
Q ss_pred -----------------c---ccCCCCC-Ccc----------------cccccc----------c--------cc---cc
Q 041277 617 -----------------K---SSNMDMN-STS----------------SRRLSI----------V--------SL---SS 638 (1133)
Q Consensus 617 -----------------~---~~~~~~~-~~~----------------~~~~~~----------~--------~~---~~ 638 (1133)
. ....+.. +.. ..+... . .. ..
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1490)
T TIGR01271 707 NPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGE 786 (1490)
T ss_pred cccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence 0 0000000 000 000000 0 00 00
Q ss_pred ccC-----cc------c------cC-----CC--CC------CC----------cchhhcCCCchHHHHHHHhhcc--ch
Q 041277 639 SAN-----SF------A------QG-----RG--AS------QS----------NEEDIKKLPVPSFRRLVALNAP--EW 676 (1133)
Q Consensus 639 ~~~-----~~------~------~~-----~~--~~------~~----------~~~~~~~~~~~~~~~l~~~~~~--~~ 676 (1133)
... .. . .. .. .+ .+ .+++....+...++.++.|.+. .+
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~ 866 (1490)
T TIGR01271 787 NRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNL 866 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcH
Confidence 000 00 0 00 00 00 00 0001111122333334444332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hc-CChh-H-H---------hhhhhHH-HHHHHHHHHHHHHHHHHHH
Q 041277 677 KQATLGCVGATLFGAVQPIYAFAMGSMISVY--FL-TDHD-E-I---------KKKTSIY-AFCFLGLAVFTLVINIIQH 741 (1133)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~-~-~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~ 741 (1133)
..+.+.+++.++..++.....+|+..+.... +. .... . . ......| +.+|++++++..++.+++.
T Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1490)
T TIGR01271 867 VFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRG 946 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 2222223333333444444455554332100 00 0000 0 0 0011122 3445555555667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041277 742 YNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIA 821 (1133)
Q Consensus 742 ~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 821 (1133)
+++.+.+.+++.++|.+++++++++|++||+ ++|+|+++|||++|++.+++.++..+..++..++.+++.++++++++
T Consensus 947 ~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~ 1024 (1490)
T TIGR01271 947 LPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQ 1024 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 68999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHH
Q 041277 822 WRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQ 901 (1133)
Q Consensus 822 w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~ 901 (1133)
|.+.+++++++.++++...++.+..++..+......+++.+++.|+++|+.|||+|+.++++.++|.+..+...+.....
T Consensus 1025 p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 1104 (1490)
T TIGR01271 1025 PYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLY 1104 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 87654433332222222233333344445555666788999999999999999999999999999999988665443332
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 041277 902 SWYAGIGLAFSQSLASCTW--ALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVM 979 (1133)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~--~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l 979 (1133)
.....+.......+..+.. +++++++. ..++.|.+..++.+...+..++..+...+.+++..+.+++|+.+++
T Consensus 1105 ~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~ 1179 (1490)
T TIGR01271 1105 LSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFI 1179 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222222222211111 11122222 2344555555566666677778888888899999999999999999
Q ss_pred ccCCCCCCCCCC--------------CCCC--CCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCH
Q 041277 980 DRYTKIEPEDPE--------------GHQP--ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGK 1043 (1133)
Q Consensus 980 ~~~~~~~~~~~~--------------~~~~--~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGK 1043 (1133)
+.+++.+...+. ...+ .+..|+|+|+||+|+|++. .++||+|+||+|+|||||||||||||||
T Consensus 1180 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGK 1258 (1490)
T TIGR01271 1180 DLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGK 1258 (1490)
T ss_pred cCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCH
Confidence 765543211000 0011 1345899999999999743 4579999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHH
Q 041277 1044 STIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDF 1123 (1133)
Q Consensus 1044 STL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~df 1123 (1133)
|||+++|+|+|+ ++|+|+|||+||+++++++||++|++|||||+||+|||||||++. ++++|+|+|+||++++++++
T Consensus 1259 STLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~--~~~tdeei~~aL~~~~L~~~ 1335 (1490)
T TIGR01271 1259 STLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY--EQWSDEEIWKVAEEVGLKSV 1335 (1490)
T ss_pred HHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc--cCCCHHHHHHHHHHCCCHHH
Confidence 999999999998 799999999999999999999999999999999999999999765 35799999999999999999
Q ss_pred HhhcccccCC
Q 041277 1124 IAGLNEGYDT 1133 (1133)
Q Consensus 1124 I~~LP~G~dT 1133 (1133)
|.++|+||||
T Consensus 1336 i~~lp~GLdt 1345 (1490)
T TIGR01271 1336 IEQFPDKLDF 1345 (1490)
T ss_pred HHhCcccccc
Confidence 9999999997
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-110 Score=964.13 Aligned_cols=574 Identities=36% Similarity=0.589 Sum_probs=536.0
Q ss_pred hHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 20 SFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFL 99 (1133)
Q Consensus 20 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (1133)
.+++++.|+++. |.++..+.++.++........|.+.|+++|.+.... + ....+...+..+.++.++..++.++
T Consensus 134 ~~~rl~~l~~~~-~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~--~---~~~~~~~~~~~l~~l~~~~a~~~~~ 207 (716)
T KOG0058|consen 134 LLKRLLGLLKPE-WKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGD--D---SADALKRACTILLGLFLIGALANAI 207 (716)
T ss_pred HHHHHHHHhchh-HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhcc--c---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999775 555667777777777777777899999999876511 1 1233444566677778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 041277 100 EGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFL 179 (1133)
Q Consensus 100 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1133)
+.+++.+.++++..++|..+|+++++++++|||. + .+|+++||++.|++.+.+.++..+...+.+.+..++++++|++
T Consensus 208 r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~-n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~ 285 (716)
T KOG0058|consen 208 RGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE-N-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFS 285 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-C-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 9999999999999999999999999999999996 6 8999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 041277 180 MLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGL 259 (1133)
Q Consensus 180 ~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 259 (1133)
++|+|+++.++.+|+++++..+++++.++..++.|++.+++++..+|.+++|||||+|+.|+.+.+||.+..++..+...
T Consensus 286 ~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~ 365 (716)
T KOG0058|consen 286 LSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSK 365 (716)
T ss_pred hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041277 260 KQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMI 338 (1133)
Q Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 338 (1133)
|.+...+++.. ..+..++....++|||++++..|.+|.|.+.+|++|......++..+...+..+.++..|.+|++|++
T Consensus 366 k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~ 445 (716)
T KOG0058|consen 366 KEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELM 445 (716)
T ss_pred HHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 99999988888 88888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 339 KRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
|.+|..+.+ ....|....|.|+|+||+|+||.+|+.+||+|+||+|+|||++|+||||||||||++++|.++|+|++|
T Consensus 446 dr~P~i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG 523 (716)
T KOG0058|consen 446 DRKPRIPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG 523 (716)
T ss_pred ccCCCCCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 999987653 222233578999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCC
Q 041277 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 419 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 498 (1133)
+|.+||+||++++.++||++||+|.|||.||++||+|||.||.++.++|++.+|++.+++|+||.++|+||||.|||+|.
T Consensus 524 ~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 524 RILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS 603 (716)
T ss_pred eEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
+|||||||||||||||++||.||||||+|||||.++|..++++|.+..+++|||+|+|||+++++||+|+|+++|+++|.
T Consensus 604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccchhhHHHHHhhcCCC
Q 041277 579 GSHDELIQAESGLYTSLVRLQTTTP 603 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~~~~~~~~~ 603 (1133)
|+|+||++++++.|+++++.|....
T Consensus 684 G~h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 684 GTHDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred ccHHHHhhCcccHHHHHHHHhcccC
Confidence 9999999977799999999886543
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.2e-106 Score=975.95 Aligned_cols=578 Identities=44% Similarity=0.697 Sum_probs=547.0
Q ss_pred ccchHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 041277 17 KNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVA 96 (1133)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1133)
.+.++++++++.+| +|.++++|++++++.|..+|++.+++++++..+... +..........|+++++++++..+++
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~---~~~~~~~~~~~~al~f~~l~~~~~i~ 723 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPP---DDDELKREVRAWALIFLGLGIVSGIT 723 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999876 688889999999999999999999999999988644 22222233334888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 041277 97 CFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLV 176 (1133)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1133)
.+++.+++...|+++..|+|..+|+++++++++|||.+.|+ |.|.+|+.+|...++..+++.+..+++++..+++++++
T Consensus 724 ~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iii 802 (1228)
T KOG0055|consen 724 NFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIII 802 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999985535 99999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHH
Q 041277 177 AFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQ 256 (1133)
Q Consensus 177 ~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 256 (1133)
.|+++|+|+++++++.|++++..+...+.+.....+..+..++..+.+.|+++|||||++|+.|+++.+.|.+..++..+
T Consensus 803 af~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~ 882 (1228)
T KOG0055|consen 803 AFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRK 882 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 257 LGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIM 335 (1133)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~ 335 (1133)
...|.+.+.++.++ .+.+.++.+++.+|||++++.+|.+++.+++.+++.+.+....+++.....+++.+|+.|+.+|+
T Consensus 883 ~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF 962 (1228)
T KOG0055|consen 883 SSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIF 962 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC
Q 041277 336 EMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP 415 (1133)
Q Consensus 336 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~ 415 (1133)
++++++|+++++++.+...+..+|+|+|+||+|+||.+|+.+||+|+||+|++||++||||||||||||++.+|.|+|+|
T Consensus 963 ~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen 963 EILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred HHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 99999998776543444456678999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccC
Q 041277 416 LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495 (1133)
Q Consensus 416 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 495 (1133)
++|.|.|||+|++++++++||++||.|.|||.||++||||||+||.++.+++|+.+||+.+++|+||.+||+||||.|||
T Consensus 1043 ~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGe 1122 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGE 1122 (1228)
T ss_pred CCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCc
Confidence 99999999999999999999999999999999999999999999966689999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
+|.+||||||||||||||+++||+||||||+|||||.++|+.+|++|++.+.|+|+|+|+|||+++++||.|+|++||+|
T Consensus 1123 rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~V 1202 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKV 1202 (1228)
T ss_pred ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcchhccccchhhHHHHHhhc
Q 041277 576 METGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 576 ~~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
+|+|+|++|++ ++|.|.++++.|.
T Consensus 1203 vE~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1203 VEQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred EecccHHHHHh-CCCchHHHhhhcc
Confidence 99999999999 7999999998774
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=6.1e-93 Score=858.82 Aligned_cols=568 Identities=32% Similarity=0.479 Sum_probs=513.8
Q ss_pred ccchHHHHHhhhchhhHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHH
Q 041277 17 KNGSFRSIFMHADGVDMFL--MVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSW 94 (1133)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1133)
++..+.+++....++++.+ +++..++..+.+++.| ++...++|.+.... ..+.+....+.+++.++...
T Consensus 138 ~~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p---~~~q~viD~Vl~~~------~~~tL~vl~ig~~~~~l~~~ 208 (709)
T COG2274 138 PPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATP---LFSQIVIDKVLPDA------SRSTLTVLAIGLLLAALFEA 208 (709)
T ss_pred cccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhccC------chhHHHHHHHHHHHHHHHHH
Confidence 3344555555554443332 3333444444455555 67788999876542 12344445555666778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 041277 95 VACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCY 174 (1133)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (1133)
++.+++.+...+.+.|+..++-.++|+|++++|++||.+ + ++|++++|+. |.++|+++++..+...+.++.+.++.+
T Consensus 209 ~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~-r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l 285 (709)
T COG2274 209 LLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK-R-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFL 285 (709)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccC-C-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996 6 9999999985 999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHH
Q 041277 175 LVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGS 254 (1133)
Q Consensus 175 ~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 254 (1133)
++|++++|+|++++++.+|+++++..++.+.+++..++..+..++.++.+.|+++|+++||+.+.|..+..+|++...+.
T Consensus 286 ~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~ 365 (709)
T COG2274 286 AVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQ 365 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 255 VQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGER 333 (1133)
Q Consensus 255 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 333 (1133)
.+...+.......... ..++..++.++++|+|+++|++|++|+|.+++|.+....+..|+..+...+..+++++.+.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~r 445 (709)
T COG2274 366 VNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALER 445 (709)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888777 778888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 334 IMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 334 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+.++++.++|.+.+.. ....+...|+|+|+||+|+|+.++ +++|+|+||+|++||++||||+||||||||+|+|+|+|
T Consensus 446 L~dil~~~~E~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 446 LGDILDTPPEQEGDKT-LIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred HHHHhcCCcccccccc-cccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 9999999877543221 123456679999999999998653 47999999999999999999999999999999999999
Q ss_pred CCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccc
Q 041277 414 APLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493 (1133)
Q Consensus 414 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~ 493 (1133)
+|++|+|++||.|+.+++..++|++||||+||+.||+|||+|||+++.|+.++|++++||+.+++|+||.++|.||+|.+
T Consensus 524 ~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v 603 (709)
T COG2274 524 KPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPV 603 (709)
T ss_pred CCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCC
Q 041277 494 GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDG 573 (1133)
Q Consensus 494 ~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 573 (1133)
||+|.+||||||||++||||++++|+||||||||||||+++|+.|.+.|.+..+|+|+|+||||++++++||||+||++|
T Consensus 604 ~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~G 683 (709)
T COG2274 604 GEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQG 683 (709)
T ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCcchhccccchhhHHHHHhh
Q 041277 574 QVMETGSHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 574 ~i~~~g~~~~l~~~~~~~~~~~~~~~ 599 (1133)
+|+++|+|+|+++ .+|.|+++++.|
T Consensus 684 kiv~~gs~~ell~-~~g~y~~l~~~q 708 (709)
T COG2274 684 KIVEQGSHEELLA-QGGLYARLYQQQ 708 (709)
T ss_pred ceeccCCHHHHHH-hcChHHHHHhcc
Confidence 9999999999999 599999998765
No 12
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.3e-87 Score=829.32 Aligned_cols=569 Identities=21% Similarity=0.256 Sum_probs=484.7
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.+++++ .++++++++++.+++.+..|+++++++|.+.... . + ......+...++++.++..++.+
T Consensus 8 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~--~-~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK11174 8 ELTRWLKQQSKPAKR-WLNLSILLGFLSGLLLIAQAWLLATILQALIIEN--I--P-REALLPPFILLILLFVLRALLAW 81 (588)
T ss_pred hhhHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--c-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888876644 4556777777777777888899999999754210 0 0 01122233334445566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.++..+.+.++..++|.++|+|++++|.++|++ . ++|++++|+++|++.+++.+.+.+..++.+++.+++.+++++
T Consensus 82 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK11174 82 LRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQG-K-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVF 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-C-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999996 6 899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|++++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++.++..
T Consensus 160 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK11174 160 PINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRT 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTV---------FAVGASIAVGGLALGAGLPNLKYFSEAM 328 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1133)
.+..+..+...+ ..++..+..+++++++++.+ .|.+|+|.+ +++..+......|+..+...+..++++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~ 318 (588)
T PRK11174 240 MEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAV 318 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 877776665555 44444444444445555544 377887754 1112333445678888888899999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHH
Q 041277 329 AAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIAL 408 (1133)
Q Consensus 329 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~ 408 (1133)
++++|+.++++.+++.+... ....+....+.|+|+||+|.|+++ +++|+|+||+|++||++|||||||||||||+++
T Consensus 319 ~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~l 395 (588)
T PRK11174 319 GAAESLVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNA 395 (588)
T ss_pred HHHHHHHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999999998764322111 101111123579999999877542 469999999999999999999999999999999
Q ss_pred HHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCc
Q 041277 409 LQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQ 488 (1133)
Q Consensus 409 l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g 488 (1133)
|+|+| |++|+|.+||+|+++++.+++|++|+||||||+||++||+|||++|+|+.++++++++|+.+++++|++++|+|
T Consensus 396 L~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G 474 (588)
T PRK11174 396 LLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQG 474 (588)
T ss_pred HhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccc
Confidence 99999 99999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEE
Q 041277 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIA 568 (1133)
Q Consensus 489 ~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~ 568 (1133)
|||.+||+|.+|||||||||+||||+++||+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|+
T Consensus 475 ~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Ii 554 (588)
T PRK11174 475 LDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW 554 (588)
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred EEeCCeEEeecCcchhccccchhhHHHHHhhcC
Q 041277 569 VVQDGQVMETGSHDELIQAESGLYTSLVRLQTT 601 (1133)
Q Consensus 569 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 601 (1133)
+|++|+++|+|+|+||++ +++.|++++..|..
T Consensus 555 vl~~G~i~e~G~~~eL~~-~~~~y~~l~~~q~~ 586 (588)
T PRK11174 555 VMQDGQIVQQGDYAELSQ-AGGLFATLLAHRQE 586 (588)
T ss_pred EEeCCeEeecCCHHHHHh-cchHHHHHHHHhhc
Confidence 999999999999999998 68899999987753
No 13
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.2e-87 Score=879.45 Aligned_cols=571 Identities=30% Similarity=0.436 Sum_probs=490.3
Q ss_pred hHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 20 SFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFL 99 (1133)
Q Consensus 20 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (1133)
.+.+++++..++.+ .++++++++++.+.+.|+++++++.+++.+... .........+++++++++++.+++.++
T Consensus 812 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~l~~~~~~i~~~~~~~l 885 (1466)
T PTZ00265 812 NLRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDF-----ANLEANSNKYSLYILVIAIAMFISETL 885 (1466)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666654433 356778888889999999999999999976432 011122345566677778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 041277 100 EGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFL 179 (1133)
Q Consensus 100 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1133)
+.++..++++++..++|.++|++++++|++|||++.+++|++++|+++|++.+++.+...+..++..++.++++++++++
T Consensus 886 ~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~ 965 (1466)
T PTZ00265 886 KNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFY 965 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999841238999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHHcchH
Q 041277 180 MLWRLAIVGFPFVVLLVIPGLMYGRTLMSLA-RK-----------------MRDEYNKAGTIAEQAISSIRTVYAFVGES 241 (1133)
Q Consensus 180 ~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~gi~~ik~~~~e~ 241 (1133)
++|.++++++++++++ ...+.++.+... ++ .++..++.+..++|+++|+++||+|+.|+
T Consensus 966 ~~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~ 1042 (1466)
T PTZ00265 966 FCPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLED 1042 (1466)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchH
Confidence 9999988766444333 333444332211 11 22346677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 242 KTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPN 320 (1133)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~ 320 (1133)
.+.++|.+..+...+...+.....++..+ ..++.+++.++++|+|++++..|.+|+|+++++++++.....++..+...
T Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~ 1122 (1466)
T PTZ00265 1043 YFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSL 1122 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888887 77777888889999999999999999999998887766655667788888
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc---cccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcC
Q 041277 321 LKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEI---LENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGG 397 (1133)
Q Consensus 321 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~ 397 (1133)
+..++++++|++|++++++.+++.+..+..+.. ++...+.|+|+||+|+||++++.++|+|+||+|++|+++|||||
T Consensus 1123 ~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~ 1202 (1466)
T PTZ00265 1123 KGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGE 1202 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECC
Confidence 999999999999999999876643221111111 12345789999999999876556799999999999999999999
Q ss_pred CCCcHHHHHHHHHhccCC------------------------------------------------------CccEEEEC
Q 041277 398 SGSGKSTVIALLQRFYAP------------------------------------------------------LGGEIILD 423 (1133)
Q Consensus 398 sGsGKSTll~~l~~~~~~------------------------------------------------------~~G~i~~~ 423 (1133)
||||||||+++|+|+|+| ++|+|++|
T Consensus 1203 SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~id 1282 (1466)
T PTZ00265 1203 TGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLD 1282 (1466)
T ss_pred CCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEEC
Confidence 999999999999999999 69999999
Q ss_pred CeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 424 GVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 424 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
|+|+++++.+++|++||||+|||.||++||+|||.||.++++++++++||+.+++++||.+||+||||.|||+|.+||||
T Consensus 1283 G~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGG 1362 (1466)
T PTZ00265 1283 GVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGG 1362 (1466)
T ss_pred CEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeC----CeEE-
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQD----GQVM- 576 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~----G~i~- 576 (1133)
|||||||||||+++|+||||||||||||+++|+.|+++|.+.. +++|+|+||||+++++.||+|+||++ |+++
T Consensus 1363 QkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~ 1442 (1466)
T PTZ00265 1363 QKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQ 1442 (1466)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEE
Confidence 9999999999999999999999999999999999999999884 69999999999999999999999999 9955
Q ss_pred eecCcchhccccchhhHHHHHhh
Q 041277 577 ETGSHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~~~ 599 (1133)
|+|+|+||++.+++.|+++++.|
T Consensus 1443 e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1443 AHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred EecCHHHHHhcCCChHHHHHhhc
Confidence 89999999974489999998765
No 14
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.3e-86 Score=808.79 Aligned_cols=561 Identities=34% Similarity=0.533 Sum_probs=499.4
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLE 100 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1133)
+++++++.+ .+ .+.++.++.++........+++++.++|.+... . ........+++++.++..++.++.
T Consensus 4 ~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~----~~~~~~~~~~~~~~~~~~v~~~~~ 72 (567)
T COG1132 4 LRRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD----L----GELLELLLLLLLLALLGGVLRALQ 72 (567)
T ss_pred HHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----H----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555544 34 455566666666666667778888899876511 1 122233344445555677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 101 GYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM 180 (1133)
Q Consensus 101 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1133)
.++..+.+.+...++|.+++++++++|+++|++ + ++|++++|+++|++.++..+.+....+...+..+++.+++++..
T Consensus 73 ~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (567)
T COG1132 73 SYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-A-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSL 150 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCc-C-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999996 6 89999999999999999999988666666788888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK 260 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 260 (1133)
+|.+++++++..|++.++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.+++++..++..+...+
T Consensus 151 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~ 230 (567)
T COG1132 151 SWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230 (567)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041277 261 QGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIK 339 (1133)
Q Consensus 261 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 339 (1133)
.....+...+ ...+..+...+++++|++.+..+.+++|.+.+++.+......|+..+...+..++++..|++|++++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~ 310 (567)
T COG1132 231 ASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLD 310 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888887777 777888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 340 RVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
.+++...... ......++|+|+||+|+|++ ++++|+|+||++++||++||||||||||||++++|+|+|+|++|+
T Consensus 311 ~~~~~~~~~~---~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~ 385 (567)
T COG1132 311 EEPEVEDPPD---PLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGE 385 (567)
T ss_pred CCccccCCCC---CCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCe
Confidence 8665332111 12234577999999999984 346999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 420 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
|++||+|+++++..++|++|++|||||+||++||+|||.+|+++++++++++||+.++++||++++|+||||.+||+|.+
T Consensus 386 I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~ 465 (567)
T COG1132 386 ILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVN 465 (567)
T ss_pred EEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
|||||||||+||||+++||||||||||||+||+++|+.+++.+.++.++||+|+||||++++++||+|+||++|+|+|+|
T Consensus 466 LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G 545 (567)
T COG1132 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERG 545 (567)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CcchhccccchhhHHHHHhhc
Q 041277 580 SHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
+|+||++ .++.|+++++.|.
T Consensus 546 ~h~eLl~-~~g~y~~l~~~~~ 565 (567)
T COG1132 546 THEELLA-KGGLYARLYQAQG 565 (567)
T ss_pred CHHHHHH-cCCHHHHHHHHhh
Confidence 9999999 5999999998775
No 15
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5.6e-86 Score=825.11 Aligned_cols=564 Identities=34% Similarity=0.539 Sum_probs=496.2
Q ss_pred cchHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041277 18 NGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVAC 97 (1133)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (1133)
...+++++++.++. +..+++++++.++..+...+.|+++++++|.+.... +. .........++++.++..++.
T Consensus 146 ~~~~~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~ 218 (711)
T TIGR00958 146 ADLLFRLLGLSGRD-WPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDK--GP----PALASAIFFMCLLSIASSVSA 218 (711)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34577788887654 444555666666667777777889999999865321 11 112222233344555667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 041277 98 FLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVA 177 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1133)
+++.++..+.+.++..++|.++|++++++|.++|++ . ++|++++|+++|++.+++.+.+.+..++.+++.+++.++++
T Consensus 219 ~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l 296 (711)
T TIGR00958 219 GLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE-N-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFM 296 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999995 6 99999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHH
Q 041277 178 FLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQL 257 (1133)
Q Consensus 178 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 257 (1133)
++++|+++++.++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+.
T Consensus 297 ~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~ 376 (711)
T TIGR00958 297 LWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQL 376 (711)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 258 GLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIME 336 (1133)
Q Consensus 258 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 336 (1133)
..+.....+.... ...+..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..++++..+.+|+.+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~ 456 (711)
T TIGR00958 377 NKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFE 456 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777766665555 455556666778889999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 337 MIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
+++.+++.+... ...+.+..+.|+|+||+|+|++++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|+
T Consensus 457 ~l~~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~ 534 (711)
T TIGR00958 457 YLDRKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT 534 (711)
T ss_pred HhCCCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 998765533211 112223456799999999998655567999999999999999999999999999999999999999
Q ss_pred ccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 417 GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 417 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
+|+|.+||+|+++++.+++|++|+||||||++|++||+|||.+|.++.+++++.++++.++++++++++|+|+||.+||+
T Consensus 535 ~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 535 GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred CCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|.+|||||||||+||||++++|+|+|||||||+||+++++.+++ ....+++|+|+||||+++++.||+|++|++|+|+
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~iv 692 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVV 692 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998 3334789999999999999999999999999999
Q ss_pred eecCcchhccccchhhHHH
Q 041277 577 ETGSHDELIQAESGLYTSL 595 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~ 595 (1133)
|+|+|+||++ +++.|+++
T Consensus 693 e~Gt~~eL~~-~~~~y~~l 710 (711)
T TIGR00958 693 EMGTHKQLME-DQGCYKHL 710 (711)
T ss_pred EeeCHHHHHh-CCCchHhc
Confidence 9999999998 57888875
No 16
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.2e-84 Score=812.48 Aligned_cols=563 Identities=27% Similarity=0.353 Sum_probs=493.2
Q ss_pred chHHHHHhh-hchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMH-ADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVAC 97 (1133)
Q Consensus 19 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (1133)
..+++++++ .++. +..++..++++++..+.....|++++.++|.+.... + ...+....+.++++.++..++.
T Consensus 121 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~--~----~~~l~~~~~~~~~~~~~~~~~~ 193 (686)
T TIGR03797 121 LGLRDLLRFALRGA-RRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA--D----RSLLVQIALALLAAAVGAAAFQ 193 (686)
T ss_pred ccHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--C----hhHHHHHHHHHHHHHHHHHHHH
Confidence 446666666 3333 333344455555555555566678899999765321 1 1222233334445556677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 041277 98 FLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVA 177 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1133)
+++.++..+.+.++..++|..+|+|++++|++||++ . ++|++++|++ |++.+++.+...+...+.++...+++++++
T Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 270 (686)
T TIGR03797 194 LAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQ-Y-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLM 270 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-C-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999996 6 9999999997 899999999888888887887788888999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHH
Q 041277 178 FLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQL 257 (1133)
Q Consensus 178 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 257 (1133)
++++|++++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+.
T Consensus 271 ~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 350 (686)
T TIGR03797 271 FYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKL 350 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 258 GLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIME 336 (1133)
Q Consensus 258 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 336 (1133)
..+.....+.... ..++..+..++++|+|++++.+|.+|+|.++++..+...+..|+..+...+..+++++.+.+|+.+
T Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 430 (686)
T TIGR03797 351 ELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKP 430 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777666 566667777888999999999999999999999999889899999999999999999999999999
Q ss_pred HhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 337 MIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
+++.+++.+.. ...+....+.|+|+||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|+
T Consensus 431 ~l~~~~e~~~~---~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~ 506 (686)
T TIGR03797 431 ILEALPEVDEA---KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE 506 (686)
T ss_pred HhcCCcccccC---cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 99876543211 11122235689999999999743 356999999999999999999999999999999999999999
Q ss_pred ccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 417 GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 417 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
+|+|++||+|+++++.+++|++||||||||++|++||+|||.+++| .++++++++++.++++++++++|+|+||.+||+
T Consensus 507 ~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 507 SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 9999999999999999999999999999999999999999999988 899999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.|++. ++|+|+||||+++++.||+|++|++|+|+
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv 663 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVV 663 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999876 68999999999999999999999999999
Q ss_pred eecCcchhccccchhhHHHHHhh
Q 041277 577 ETGSHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~~~ 599 (1133)
++|+|+||++ +++.|+++++.|
T Consensus 664 ~~G~~~~Ll~-~~~~y~~l~~~q 685 (686)
T TIGR03797 664 QQGTYDELMA-REGLFAQLARRQ 685 (686)
T ss_pred EECCHHHHHh-CCcHHHHHHHhc
Confidence 9999999998 689999998754
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.7e-84 Score=812.22 Aligned_cols=564 Identities=24% Similarity=0.347 Sum_probs=492.5
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.++.++. ++..++++++..+.....|++++.++|.+.... . ...+......++++.++..++.+
T Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~--~----~~~l~~~~~~~~~~~~~~~~~~~ 214 (708)
T TIGR01193 142 NSLLKFIPLITRQKKL-IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK--M----MGTLGIISIGLIIAYIIQQILSY 214 (708)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--C----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776654443 334444555555555566688899999765331 1 11222223333444556678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.++..+.+.++..++|.++|+|++++|+++|++ . ++|++++|++ |++.+++++...+...+.++..+++.+++++
T Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~-~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 291 (708)
T TIGR01193 215 IQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST-R-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLV 291 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996 6 9999999998 9999999998888888888888888888899
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|+++++.++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+..
T Consensus 292 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 371 (708)
T TIGR01193 292 RQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKS 371 (708)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+.... ..++..+..++++|+|++++.+|.+|+|.++++..+...+..|+..+...+..+++++.+.+|+.++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 451 (708)
T TIGR01193 372 FKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEV 451 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777766665 5556666677888999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+++.+... .........+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+|+|++
T Consensus 452 l~~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~ 528 (708)
T TIGR01193 452 YLVDSEFINKK-KRTELNNLNGDIVINDVSYSYGYG--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS 528 (708)
T ss_pred HcCCCcccccc-cccCCCCCCCcEEEEEEEEEcCCC--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 98765532211 101122345689999999999743 469999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcC-CCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFG-KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
|+|++||+|+++++.+++|++||||||||++|++||+|||.++ .++.++++++++|+.++++++++++|+||||.+||+
T Consensus 529 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 529 GEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred cEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 9999999999999999999999999999999999999999998 477899999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|.+|||||||||+||||++++|+|||||||||+||+++++.+++.|++. +++|+|+||||+++++.||+|++|++|+++
T Consensus 609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999875 689999999999999999999999999999
Q ss_pred eecCcchhccccchhhHHHHH
Q 041277 577 ETGSHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~ 597 (1133)
+.|+|+||++ .++.|+++++
T Consensus 688 ~~G~~~~L~~-~~~~y~~l~~ 707 (708)
T TIGR01193 688 EQGSHDELLD-RNGFYASLIH 707 (708)
T ss_pred EECCHHHHHh-cCCcHHHHhh
Confidence 9999999998 5789998874
No 18
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=8.1e-84 Score=811.17 Aligned_cols=564 Identities=26% Similarity=0.368 Sum_probs=490.5
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..++.++++.+++++ .+...++++++..+.....|++++.++|.+.... . ...+......++++.++..++.+
T Consensus 140 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~--~----~~~l~~~~~~~~~~~~~~~~~~~ 212 (710)
T TIGR03796 140 SLLRALWRRLRGSRG-ALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG--R----QDWLRPLLLGMGLTALLQGVLTW 212 (710)
T ss_pred ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--C----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666554433 2233344444444444455678889999765331 1 11122223334445566778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.++..+.+.++..++|.++|+|++++|+++|++ . ++|++++|+++| +.+++++...+...+.++..+++.+++++
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~-~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 289 (710)
T TIGR03796 213 LQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQ-R-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLML 289 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-C-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996 6 999999999988 78999999888889999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|+++++.++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+..
T Consensus 290 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~ 369 (710)
T TIGR03796 290 LYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQ 369 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+.... ..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++++..+.+|+.++
T Consensus 370 ~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~i 449 (710)
T TIGR03796 370 QELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDV 449 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777776666 6666777778889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCC---c-cccc-ccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 338 IKRVPKIDSDSM---E-GEIL-ENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 338 l~~~~~~~~~~~---~-~~~~-~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
++.+++.+.... . ...+ ....+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+
T Consensus 450 l~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 450 LRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred HcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 987654321110 0 0111 2235689999999999854 35699999999999999999999999999999999999
Q ss_pred cCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCccccc
Q 041277 413 YAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492 (1133)
Q Consensus 413 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 492 (1133)
|+|++|+|.+||+|+++++.+++|++||||||+|++|++||+|||.++.++.++++++++|+.+++++++.++|+|+||.
T Consensus 529 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~ 608 (710)
T TIGR03796 529 YQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAE 608 (710)
T ss_pred CCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccce
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 493 VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 493 ~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.+++ .++|+|+||||+++++.||+|++|++
T Consensus 609 i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~ 686 (710)
T TIGR03796 609 LAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLER 686 (710)
T ss_pred eccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999986 58999999999999999999999999
Q ss_pred CeEEeecCcchhccccchhhHHHH
Q 041277 573 GQVMETGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 573 G~i~~~g~~~~l~~~~~~~~~~~~ 596 (1133)
|+++++|+|+||++ +++.|++++
T Consensus 687 G~i~~~G~~~~Ll~-~~~~y~~l~ 709 (710)
T TIGR03796 687 GKVVQRGTHEELWA-VGGAYARLI 709 (710)
T ss_pred CEEEEecCHHHHHH-cCCcHHHHh
Confidence 99999999999998 688899876
No 19
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.6e-83 Score=786.00 Aligned_cols=566 Identities=22% Similarity=0.299 Sum_probs=484.9
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLE 100 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1133)
+++++++.+++++ .++++++++++..++....|+++++++|...... ...............+++++++..++.++.
T Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (574)
T PRK11160 4 LLPFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAG--LAGLYSFNYMLPAAGVRGAAIGRTAGRYGE 80 (574)
T ss_pred hHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccchhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4456666655433 3445666666666666666788999999643110 000000001111222334556777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 101 GYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM 180 (1133)
Q Consensus 101 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1133)
.++.++.+.++..++|.++|+|++++|.++|++ . ++|++++|+++|++.+++++.+.++.++.+++.+++++++++++
T Consensus 81 ~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (574)
T PRK11160 81 RLVSHDATFRVLTHLRVFTFSKLLPLSPAGLAR-Y-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFF 158 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChHhhcc-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 6 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVI-PGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGL 259 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 259 (1133)
+|++++++++++|++++ +..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...
T Consensus 159 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 238 (574)
T PRK11160 159 DLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQR 238 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 99999998888887655 45677788888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 260 KQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAV-GGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
+.....+...+ ..++..+..++++++|+++ .+|.+++|.+++++.+... ...++..+...+..++++.++++|+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~l 317 (574)
T PRK11160 239 RQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEI 317 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888887777 6666667777788999988 4889999999887766543 3456677777888999999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+++.+... ........+.|+++||+|+|++. ++++|+|+||++++||++|||||||||||||+++|+|+|+|++
T Consensus 318 l~~~~~~~~~~--~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~ 394 (574)
T PRK11160 318 TEQKPEVTFPT--TSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ 394 (574)
T ss_pred HhCCCCCCCCc--ccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 98766532111 11112234679999999999753 2469999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 497 (1133)
|+|.+||+|+++++.+++|++|+||||||++|++||+|||.++.++.+++++.++++.+++++++++ |+||||.+||+|
T Consensus 395 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g 473 (574)
T PRK11160 395 GEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGG 473 (574)
T ss_pred ceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCC
Confidence 9999999999999999999999999999999999999999999988999999999999999999999 999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEe
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 577 (1133)
.+||||||||++||||++++|+|||||||||+||+++++.+++.+.+..+++|+|+||||+++++.||+|++|++|++++
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~ 553 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIE 553 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecCcchhccccchhhHHHHH
Q 041277 578 TGSHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 578 ~g~~~~l~~~~~~~~~~~~~ 597 (1133)
.|+|+||++ +++.|+++++
T Consensus 554 ~g~~~~l~~-~~g~y~~l~~ 572 (574)
T PRK11160 554 QGTHQELLA-QQGRYYQLKQ 572 (574)
T ss_pred eCCHHHHHh-cCcHHHHHHh
Confidence 999999998 6899999885
No 20
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=6.5e-83 Score=800.13 Aligned_cols=555 Identities=24% Similarity=0.354 Sum_probs=485.6
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.+++++ .+...++++++..++....|++++.++|.+.... + ...+....+.++++.++..++.+
T Consensus 133 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~--~----~~~l~~~~~~~~~~~~~~~~~~~ 205 (694)
T TIGR03375 133 RPKHWFWSTLKESWP-LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ--A----FETLWVLAIGVALAIVFDFVLKT 205 (694)
T ss_pred ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--c----HhHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666554433 3334444445555555566678899999765321 1 11222223333444556678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.++..+.+.++..++|.++|+|++++|+++ ++ . ++|++++|+ +|++.+++++...+...+.++..+++.+++++
T Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~-~-~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 281 (694)
T TIGR03375 206 LRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RP-A-SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIA 281 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CC-C-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 53 5 899999999 79999999998888788888888888888999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|+++++.++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+..
T Consensus 282 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 361 (694)
T TIGR03375 282 IIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSG 361 (694)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+.... ..++..++.++++|+|++++.+|.+|+|.++++..+...+..|+..+...+..+++++.+.+|+.++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~i 441 (694)
T TIGR03375 362 LKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDEL 441 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877776 6666667777889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+++.+... .........+.|+|+||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++
T Consensus 442 l~~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~ 519 (694)
T TIGR03375 442 MQLPVERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE 519 (694)
T ss_pred HcCCCCCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 98765432111 111112235679999999999753 3469999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 497 (1133)
|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.+++++.++++++++++.++++++++++|+|+||.+||+|
T Consensus 520 G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G 599 (694)
T TIGR03375 520 GSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERG 599 (694)
T ss_pred ceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCC
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEe
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 577 (1133)
.+|||||||||+||||++++|+|+|||||||+||+++++.+++.+.+..+++|+|+||||+++++.||+|++|++|+++|
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e 679 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVA 679 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecCcchhcc
Q 041277 578 TGSHDELIQ 586 (1133)
Q Consensus 578 ~g~~~~l~~ 586 (1133)
+|+|+||++
T Consensus 680 ~G~~~eLl~ 688 (694)
T TIGR03375 680 DGPKDQVLE 688 (694)
T ss_pred eCCHHHHHH
Confidence 999999986
No 21
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-82 Score=722.55 Aligned_cols=549 Identities=24% Similarity=0.313 Sum_probs=485.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 41 IGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYL 120 (1133)
Q Consensus 41 ~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 120 (1133)
+++.+.++......+++..+++.+... .....+..+...+++..+++.++.+.+.....+++.++...+|..++
T Consensus 7 ll~~l~~i~~i~qa~llA~~l~~l~~~------~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 7 LLAVLSGIAIIAQAALLADILTKLIEG------QLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455666666655433 11233444555566667788899999999999999999999999999
Q ss_pred HHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 041277 121 KAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGL 200 (1133)
Q Consensus 121 ~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 200 (1133)
+|+.+++..+-+. . ++|+..+.++..++.++.+++..++.++.+.+.++..++.+++++|.-+++.++++|++.+++.
T Consensus 81 ~~l~~~gp~~~~~-~-~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMi 158 (559)
T COG4988 81 DKLAKLGPAFIAQ-K-PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMI 158 (559)
T ss_pred HHHHhCChhhhcC-C-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 6 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 041277 201 MYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIW 279 (1133)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 279 (1133)
.++++.++..++..+.+.++++++.|.++|+.|+|.|+..+...+++.+..++.++..++.-++.-+... ..++.+++.
T Consensus 159 lvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi 238 (559)
T COG4988 159 LVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI 238 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988777766666 788888887
Q ss_pred HHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccccccc
Q 041277 280 SFLCYYGSRMVMY-HGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVL 358 (1133)
Q Consensus 280 ~~~~~~g~~~v~~-~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 358 (1133)
+++..+.+..... |++|....+.++...--++.|+..+...++.-+.+.+|.+.++.+++.+++...............
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 7776666666666 899988887777777777889999999999999999999999999987654322111001111123
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
.+++.+|++|.|++.+ ++++|+||++++|+.+||||+||||||||+++|+|+++|++|+|.+||+++++++.+.||++
T Consensus 319 ~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 3455669999998653 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
++||+|+|++|++||||||.+++++.+++++.++++.+++.+|+.. |+|+||.+||+|.+|||||+||+++|||+++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHh
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
+++|||||||+||.++|+.|++.|.++.+++|+|+||||++.+.+||+|+|||+|+++++|+|++|.+ +++.|++++..
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~-~~~~y~~l~~~ 554 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE-KQGLYANLLKQ 554 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh-cCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 69999999988
Q ss_pred hcC
Q 041277 599 QTT 601 (1133)
Q Consensus 599 ~~~ 601 (1133)
|..
T Consensus 555 q~~ 557 (559)
T COG4988 555 QEG 557 (559)
T ss_pred Hhc
Confidence 753
No 22
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6.6e-82 Score=778.28 Aligned_cols=566 Identities=31% Similarity=0.474 Sum_probs=491.7
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLE 100 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1133)
+++++++.++.++. +++.+++.++..+.....+++++.++|..... ... .......+.+++++++..++.+++
T Consensus 13 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~---~~~~~~~~~~~~~~l~~~~~~~~~ 85 (582)
T PRK11176 13 FRRLWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGK---ADR---SVLKWMPLVVIGLMILRGITSFIS 85 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---Cch---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456655544333 33444455555555555667888888865432 110 111112222334556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 101 GYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM 180 (1133)
Q Consensus 101 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1133)
.++..+.+.++..++|..+++++++.|.++|++ . ++|++++|+++|++.+++.+...+..++.+++.+++.+++++++
T Consensus 86 ~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (582)
T PRK11176 86 SYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK-Q-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY 163 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999996 6 89999999999999999999998899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK 260 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 260 (1133)
+|.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+
T Consensus 164 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (582)
T PRK11176 164 SWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMK 243 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041277 261 QGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIK 339 (1133)
Q Consensus 261 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 339 (1133)
.......... ..++..+...+++++|++.+..|.+|+|.+++++.+......|+..+...+..+++++.+.+|+.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~ 323 (582)
T PRK11176 244 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD 323 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8877776666 666666677778899999999999999999988888888888999999999999999999999999998
Q ss_pred cCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 340 RVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
.+++.+.. ....++..+.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+
T Consensus 324 ~~~~~~~~---~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~ 399 (582)
T PRK11176 324 LEQEKDEG---KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399 (582)
T ss_pred CCCcCCCC---CcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence 65432211 11122234579999999999753 356999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCC-CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCC
Q 041277 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKED-ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 420 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 498 (1133)
|++||+|+++++.+++|++|+||||||++|++||+|||.+|.++ .++++++++++.++++++++++|+|+||.+||+|.
T Consensus 400 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~ 479 (582)
T PRK11176 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGV 479 (582)
T ss_pred EEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCC
Confidence 99999999999999999999999999999999999999999764 78999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
+|||||||||+||||++++|+|||||||||+||+++++.+.+.|.+..+++|+|+||||++.++.||+|++|++|+++|+
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVER 559 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cCcchhccccchhhHHHHHhhc
Q 041277 579 GSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
|+|+++++ +++.|++++..|.
T Consensus 560 g~~~~l~~-~~~~y~~l~~~~~ 580 (582)
T PRK11176 560 GTHAELLA-QNGVYAQLHKMQF 580 (582)
T ss_pred CCHHHHHh-CCChHHHHHHHHh
Confidence 99999998 5789999987653
No 23
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-85 Score=708.74 Aligned_cols=555 Identities=27% Similarity=0.356 Sum_probs=463.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhh-hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 38 LGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFT-HNINKNTVHLLY--LALGSWVACFLEGYCWTRTGERQATR 114 (1133)
Q Consensus 38 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1133)
.+.++.++.-+.....|.+.++++|.+... + .+. +.+..+..+.++ .+-+..++.-+++++|....+-..++
T Consensus 219 ~cl~ll~i~rli~~~~pi~~k~iv~~ltap---~--~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ 293 (790)
T KOG0056|consen 219 FCLFLLIIGRLINVSLPILSKWIVDELTAP---D--TFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTRE 293 (790)
T ss_pred HHHHHHHHHHHHhhhhHHhHHHHHHhhcCc---c--hhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHH
Confidence 334444444444555667888999877533 1 111 111111111111 12234567778888888889999999
Q ss_pred HHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHH
Q 041277 115 MRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYL-VAFLMLWRLAIVGFPFVV 193 (1133)
Q Consensus 115 lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~~l~~~~ 193 (1133)
+-.++|+|+.++++.|+-+ + ++|+++..+....+.+. ++...+.++...+.-+.++++ +...++|+.+|++++++.
T Consensus 294 ie~~lfrHlh~LSlrwHL~-r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~ 370 (790)
T KOG0056|consen 294 IETELFRHLHNLSLRWHLN-R-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMML 370 (790)
T ss_pred HHHHHHHHHHhhceeeeec-c-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHH
Confidence 9999999999999999985 6 89999888777666554 443333333333333333333 344579999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 041277 194 LLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SN 272 (1133)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 272 (1133)
++..+...+.....+.++++..+..+......+++-|.+|||-||+|+++.++|.+...++.+.+.|......+... .+
T Consensus 371 lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn 450 (790)
T KOG0056|consen 371 LYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQN 450 (790)
T ss_pred HHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888777777777888888888788888889999999999999999999999999999998888876655554444 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccc
Q 041277 273 GVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGE 352 (1133)
Q Consensus 273 ~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~ 352 (1133)
.+..++.+..-.+.+|+|..+.+|+|+++.+..|++...+|++.+......++++..-.++++++++++|+..+ .++..
T Consensus 451 ~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd-~P~a~ 529 (790)
T KOG0056|consen 451 GIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD-LPGAP 529 (790)
T ss_pred hhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc-CCCCC
Confidence 44444444455566777888999999999999999999999999999999999999999999999998877642 22333
Q ss_pred ccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH
Q 041277 353 ILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL 432 (1133)
Q Consensus 353 ~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~ 432 (1133)
+....+|.|+|+||+|.|++ .+++|+||||++.||+++|+|||||+||||++++|.|+|+.++|.|.|||+||++...
T Consensus 530 pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~ 607 (790)
T KOG0056|consen 530 PLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ 607 (790)
T ss_pred CccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH
Confidence 44556799999999999974 4579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
.++|++||+||||..||++||..||.|++|.+++||+.+|++.+++||-|.++|+||+|.|||+|-.||||||||+||||
T Consensus 608 ~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 608 SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhh
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLY 592 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 592 (1133)
+++++|.|++|||+|||||..+|+.||.++.++..++|.|+|+||++++-+||.|+|+++|+|+|.|+|+||++.++|.|
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Y 767 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAY 767 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998779999
Q ss_pred HHHHHhhcCCC
Q 041277 593 TSLVRLQTTTP 603 (1133)
Q Consensus 593 ~~~~~~~~~~~ 603 (1133)
++||+.|+...
T Consensus 768 a~MWq~qqa~g 778 (790)
T KOG0056|consen 768 ADMWQAQQAMG 778 (790)
T ss_pred HHHHHHHHhcC
Confidence 99998776543
No 24
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.4e-81 Score=787.12 Aligned_cols=567 Identities=28% Similarity=0.393 Sum_probs=495.6
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.+++++ .+...++++++..+.....|++++.++|.+.... + ...+....+.++++.++..++.+
T Consensus 125 ~~~~~~~~~~~~~~~-~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~--~----~~~l~~l~~~~~~~~~~~~~~~~ 197 (694)
T TIGR01846 125 FGFSWFIPAIIRYRK-QFREVLLISLALQLFALVTPLLFQVVIDKVLVHR--G----LSTLSVLALAMLAVAIFEPALGG 197 (694)
T ss_pred CcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--C----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666554433 2333444444444455556678899999765321 1 11222333344455566778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.++..+.+.++..++|.++|+|++++|+++|++ . ++|++++|+ +|++.+++++...+...+.++...++.+++++
T Consensus 198 l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~-~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 274 (694)
T TIGR01846 198 LRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES-R-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMF 274 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCC-C-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996 6 999999999 69999999998877777777777777788999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|+++++.++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||+||.|+.+.++|.+..++..+..
T Consensus 275 ~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 354 (694)
T TIGR01846 275 FYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAAS 354 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988898999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+.... ..++..+..++++|+|++++.+|.+|+|.++++..+......|+..+...+..+++++.+.+|+.++
T Consensus 355 ~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 434 (694)
T TIGR01846 355 FRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDI 434 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777766 6667777778889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+++.+.. .....+...+.|+++||+|+|++. ++++|+|+||+|++||++||+|+||||||||+++|+|+|+|++
T Consensus 435 l~~~~e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~ 511 (694)
T TIGR01846 435 LNSPTEPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511 (694)
T ss_pred HcCCCCccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 9876543211 111122335689999999999753 3469999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 497 (1133)
|+|++||+|+++++.+++|++|+||||+|.+|++||+|||.++.++.++++++++|+.++++++++++|+|+||.+|++|
T Consensus 512 G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g 591 (694)
T TIGR01846 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG 591 (694)
T ss_pred ceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEe
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 577 (1133)
.+||||||||++||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|++++
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~ 671 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAE 671 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecCcchhccccchhhHHHHHhh
Q 041277 578 TGSHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 578 ~g~~~~l~~~~~~~~~~~~~~~ 599 (1133)
+|+|+|+++ .++.|+++++.|
T Consensus 672 ~g~~~~l~~-~~~~y~~l~~~~ 692 (694)
T TIGR01846 672 SGRHEELLA-LQGLYARLWQQQ 692 (694)
T ss_pred eCCHHHHHH-cCChHHHHHHhh
Confidence 999999998 579999998755
No 25
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.1e-81 Score=768.33 Aligned_cols=565 Identities=25% Similarity=0.355 Sum_probs=476.9
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLE 100 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1133)
+++++++..++++ .+++.+++.++..+..+..|++++.++|...... +. .. .....+.+.++++.++..++.+++
T Consensus 11 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~--~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 85 (592)
T PRK10790 11 LKRLLAYGSPWRK-PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKG--NL-PL-GLVAGLAAAYVGLQLLAAGLHYAQ 85 (592)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Cc-ch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544433 3445566666666667777788999999764321 10 00 011111222333444566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 101 GYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM 180 (1133)
Q Consensus 101 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1133)
.+...+.+.++..++|.++|+++++.|.++|++ . ++|++++|+++|++.+++.+...+..++.++..+++.+++++++
T Consensus 86 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (592)
T PRK10790 86 SLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDT-Q-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSL 163 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999995 6 99999999999999999999999888999998888888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK 260 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 260 (1133)
+|.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+
T Consensus 164 ~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (592)
T PRK10790 164 DWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQ 243 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888888899999999999999999999999999999999988888777776
Q ss_pred HHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041277 261 QGLAKGLA-IG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMI 338 (1133)
Q Consensus 261 ~~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 338 (1133)
.....+.. .+ ..++..+...+++++++. +..|.+++|.++++..+......|+..+...+..+.++..+++|+.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l 322 (592)
T PRK10790 244 TLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELM 322 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66655443 22 222222222222233333 5789999999999999998899999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 339 KRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
+.+++... . . . .....++|+++||+|+|+++ +++|+|+||++++||++||||+||||||||+++|+|+|+|++|
T Consensus 323 ~~~~~~~~-~-~-~-~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G 396 (592)
T PRK10790 323 DGPRQQYG-N-D-D-RPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396 (592)
T ss_pred cCCCccCC-C-C-c-cCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence 86543211 1 1 1 11234679999999999742 4599999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCC
Q 041277 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 419 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 498 (1133)
+|.+||+|+++++.+++|++|+||||||.+|++||+|||.++. +.++++++++++.++++++++++|+|+||.+||+|.
T Consensus 397 ~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~ 475 (592)
T PRK10790 397 EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGN 475 (592)
T ss_pred eEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCC
Confidence 9999999999999999999999999999999999999999997 688999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
+|||||||||+||||++++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cCcchhccccchhhHHHHHhhcC
Q 041277 579 GSHDELIQAESGLYTSLVRLQTT 601 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~~~~~~~ 601 (1133)
|+|+||++ .++.|+++++.|..
T Consensus 556 G~~~~L~~-~~~~y~~l~~~~~~ 577 (592)
T PRK10790 556 GTHQQLLA-AQGRYWQMYQLQLA 577 (592)
T ss_pred cCHHHHHh-CCCHHHHHHHHHhh
Confidence 99999998 57999999987743
No 26
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.9e-80 Score=764.63 Aligned_cols=564 Identities=30% Similarity=0.459 Sum_probs=500.8
Q ss_pred HHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 22 RSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEG 101 (1133)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (1133)
++++++.++. +..++++++++++.+++.+..+++++.++|..... .. ...+......++++.++..++.+++.
T Consensus 3 ~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~---~~~~~~~~~~~~~~~i~~~~~~~~~~ 75 (571)
T TIGR02203 3 RRLWSYVRPY-KAGLVLAGVAMILVAATESTLAALLKPLLDDGFGG---RD---RSVLWWVPLVVIGLAVLRGICSFVST 75 (571)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---Cc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554443 34456677777777778888888888888864432 11 11222223344555667778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 041277 102 YCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLML 181 (1133)
Q Consensus 102 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1133)
++..+.+.++..++|..+++++++.|.++|++ . ++|++.+|+++|++.+++.+.+.+..++.+++.+++.++++++++
T Consensus 76 ~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~-~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 153 (571)
T TIGR02203 76 YLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR-Q-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYS 153 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999995 6 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHH
Q 041277 182 WRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQ 261 (1133)
Q Consensus 182 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 261 (1133)
|.++++.++..|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+++.|+.+.++|++..++..+...+.
T Consensus 154 ~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (571)
T TIGR02203 154 WQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKM 233 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041277 262 GLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKR 340 (1133)
Q Consensus 262 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~ 340 (1133)
....+.... ..++..+..++++++|++++.+|.+|+|.++++..++.....|+..+...+..+++++.+.+|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 313 (571)
T TIGR02203 234 TSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDS 313 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 888777766 6666777778889999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE
Q 041277 341 VPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420 (1133)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i 420 (1133)
+++.+... ....+..+.|+++||+|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|+|+|++|+|
T Consensus 314 ~~~~~~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I 389 (571)
T TIGR02203 314 PPEKDTGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389 (571)
T ss_pred CCCCCCCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence 65432111 1112234679999999999754 3569999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCC-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 421 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
.+||+++++++.+++|++|+||||+|++|++|++|||.++.+ +.++++++++++.+++++++.++|+|+||.+|++|.+
T Consensus 390 ~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~ 469 (571)
T TIGR02203 390 LLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL 469 (571)
T ss_pred EECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCc
Confidence 999999999999999999999999999999999999999986 7899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
|||||||||+||||++++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.|
T Consensus 470 LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g 549 (571)
T TIGR02203 470 LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERG 549 (571)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CcchhccccchhhHHHHHhh
Q 041277 580 SHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~~~ 599 (1133)
+|+++++ .++.|++++..+
T Consensus 550 ~~~~l~~-~~~~~~~~~~~~ 568 (571)
T TIGR02203 550 THNELLA-RNGLYAQLHNMQ 568 (571)
T ss_pred CHHHHHH-cCCHHHHHHHHh
Confidence 9999997 478898887654
No 27
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=6.1e-80 Score=755.18 Aligned_cols=565 Identities=28% Similarity=0.347 Sum_probs=484.8
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLE 100 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1133)
+++++++.+++++ .++++++++++..+..++.|+++++++|.+... . . .. ...+.+++..++..+..++.
T Consensus 7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~---~--~---~~-~~~~~~~~~~~~~~~~~~~~ 76 (585)
T TIGR01192 7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSK---S--D---VL-PTLALWAGFGVFNTIAYVLV 76 (585)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c--c---HH-HHHHHHHHHHHHHHHHHHHH
Confidence 5567777665543 445666777777777788889999999976432 1 0 01 11111122233334444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 101 GYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM 180 (1133)
Q Consensus 101 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1133)
.+...+.+.++..++|.++|+|++++|++||++ + ++|++++|+++|++.+++.+...+...+..++.+++.+++++++
T Consensus 77 ~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~-~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (585)
T TIGR01192 77 AREADRLAHGRRATLLTEAFGRIISMPLSWHQQ-R-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAM 154 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666777789999999999999996 6 89999999999999999999888888888888888888899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK 260 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 260 (1133)
+|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+
T Consensus 155 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (585)
T TIGR01192 155 DWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYP 234 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999988888777
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041277 261 QGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIK 339 (1133)
Q Consensus 261 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 339 (1133)
.....+.... ..++..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..+.++..+.+|+.++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~ 314 (585)
T TIGR01192 235 VLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLED 314 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7776666655 555666667778899999999999999999999988888888999999999999999999999999998
Q ss_pred cCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 340 RVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
.+++.+... .....+...+.|+++||+|+|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 315 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 391 (585)
T TIGR01192 315 SVFQREEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391 (585)
T ss_pred CCccccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCE
Confidence 654422111 111112234579999999999753 35899999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 420 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
|.+||.++++++.+++|++++||||+|++|++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+
T Consensus 392 i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~ 471 (585)
T TIGR01192 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNR 471 (585)
T ss_pred EEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCC
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
||||||||++|||||+++|+++|||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|++++.|
T Consensus 472 LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKG 551 (585)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CcchhccccchhhHHHHHhhcC
Q 041277 580 SHDELIQAESGLYTSLVRLQTT 601 (1133)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~~~~~ 601 (1133)
+|+++++ +++.|++++..+..
T Consensus 552 ~~~~l~~-~~~~y~~l~~~~~~ 572 (585)
T TIGR01192 552 SFQELIQ-KDGRFYKLLRRSGL 572 (585)
T ss_pred CHHHHHH-CCChHHHHHHhCcc
Confidence 9999998 68999999987643
No 28
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.5e-80 Score=760.87 Aligned_cols=568 Identities=28% Similarity=0.364 Sum_probs=481.9
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.++. +..+.+.++++++..++.+..|++++.++|.+... . ......+.+++++++..+..+
T Consensus 5 ~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~---~------~~~~~~~~~~~~~~~~~~~~~ 74 (588)
T PRK13657 5 RLYARVLQYLGAE-KRLGILLAVANVLLAAATFAEPILFGRIIDAISGK---G------DIFPLLAAWAGFGLFNIIAGV 74 (588)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---c------cHHHHHHHHHHHHHHHHHHHH
Confidence 3466677766543 33344555555555566666678889999976432 0 111111222222233333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
+......+...++..++|.++|+|++++|..+|++ . ++|++++|+++|++.+.+.+...+..++..++.+++.+++++
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (588)
T PRK13657 75 LVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQ-R-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLAL 152 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCc-C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455566666677779999999999999996 6 999999999999999998888777778877777888888899
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|++++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.|+.++.+.+++.+..++..+..
T Consensus 153 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
T PRK13657 153 FMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQ 232 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+.... ..++..+...+++++|++++.+|.+|+|.++++..+......|+..+...+..+..+..+.+|+.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l 312 (588)
T PRK13657 233 MPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEV 312 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777766655 5566666777888999999999999999999999888888899999999999999999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+++.+.. ......+...+.|+++||+|+|+++ +++|+|+||+++|||+++|+|+||||||||+++|+|+|+|++
T Consensus 313 ~~~~~~~~~~-~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~ 389 (588)
T PRK13657 313 EDAVPDVRDP-PGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS 389 (588)
T ss_pred hCCCcccCCC-CCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 9865432211 1111112234579999999999743 359999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 497 (1133)
|+|.+||+++++++.+++|++|+||||+|++|++|++|||.++.++.++++++++++.+++++++.++|+|+||.+|++|
T Consensus 390 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g 469 (588)
T PRK13657 390 GRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG 469 (588)
T ss_pred CEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEe
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 577 (1133)
.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++
T Consensus 470 ~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVE 549 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998878999999999999999999999999999999
Q ss_pred ecCcchhccccchhhHHHHHhhcCC
Q 041277 578 TGSHDELIQAESGLYTSLVRLQTTT 602 (1133)
Q Consensus 578 ~g~~~~l~~~~~~~~~~~~~~~~~~ 602 (1133)
+|+|+++++ .++.|++++..+...
T Consensus 550 ~g~~~~l~~-~~~~y~~l~~~~~~~ 573 (588)
T PRK13657 550 SGSFDELVA-RGGRFAALLRAQGML 573 (588)
T ss_pred eCCHHHHHH-CCChHHHHHHHhhcc
Confidence 999999997 578999998866433
No 29
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-81 Score=695.46 Aligned_cols=552 Identities=28% Similarity=0.381 Sum_probs=465.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 39 GYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRAR 118 (1133)
Q Consensus 39 ~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 118 (1133)
++++.+.+.+.....|.+++.++|....... .+. ...........+.+..++..++..++...+.++.+++..+.-.+
T Consensus 35 ~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~-~~a-~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~ 112 (591)
T KOG0057|consen 35 ALGLLLGAKILNVQVPFIFKLIIDGLNDADG-NPA-VLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSD 112 (591)
T ss_pred HHHHHHhhhHhheehHHHHHHHHhhhhhccc-Ccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455556667888888887631100 111 11122223344555667788899999999999999999999999
Q ss_pred HHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHH
Q 041277 119 YLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCY-LVAFLMLWRLAIVGFPFVVLLVI 197 (1133)
Q Consensus 119 ~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~~l~~~~~~~~ 197 (1133)
+|++++++++++|.+ . .+|.+.+.+..-...|...+...+..++..++-+.... .+-.-+++..+++.+..+..+..
T Consensus 113 vf~~~~~ld~~~~~~-~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a 190 (591)
T KOG0057|consen 113 VFRHLMSLDLSFFLS-R-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAA 190 (591)
T ss_pred HHHHHHhhhHHhhcC-C-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhe
Confidence 999999999999985 6 89999999999999998888776666666555433333 33344566677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 041277 198 PGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTF 276 (1133)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 276 (1133)
+......+..+.+++.+++.++..+.+.|.+.|..+||+||.|+++.++|.....++.+...+.....++... ...+..
T Consensus 191 ~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFs 270 (591)
T KOG0057|consen 191 FTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFS 270 (591)
T ss_pred eEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHH
Confidence 7777778888888899999999999999999999999999999999999999999999988887777666555 444555
Q ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccccc
Q 041277 277 GIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILEN 356 (1133)
Q Consensus 277 ~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~ 356 (1133)
...+.+.+.|..-+.++.+|.|+++.......+...|+..+...+..+.++..-++..+...+....+. ....++..
T Consensus 271 v~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~---~~~~~i~~ 347 (591)
T KOG0057|consen 271 VALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQ---EAALPIEL 347 (591)
T ss_pred HHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhh---hccCCccc
Confidence 566677778888888999999999988888888888999888888888888877776665543322111 11122334
Q ss_pred ccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHh
Q 041277 357 VLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 357 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r 436 (1133)
.++.|+|+||+|+|++ ++++|+++||+|++||++||||+|||||||++++|+||++ ++|+|+|||+|+++++++.+|
T Consensus 348 ~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR 424 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLR 424 (591)
T ss_pred CCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhh
Confidence 5678999999999984 3469999999999999999999999999999999999999 999999999999999999999
Q ss_pred hhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 437 SQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+.|||||||..||++||.+||.||++.++++++.++||.+++||-+.++|+||+|.+||+|..|||||||||+||||+++
T Consensus 425 ~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 425 QSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred hheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHH
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 596 (1133)
||||+++|||||+||.+||+.+.+.+.+...+||+|+|.||++++++||+|+++++|++.|.|+|+||+. +++.|+.+|
T Consensus 505 da~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w 583 (591)
T KOG0057|consen 505 DAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLW 583 (591)
T ss_pred CCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHh
Confidence 9999999999999999999999999999888999999999999999999999999999999999999999 899999999
Q ss_pred HhhcC
Q 041277 597 RLQTT 601 (1133)
Q Consensus 597 ~~~~~ 601 (1133)
..|..
T Consensus 584 ~~~~~ 588 (591)
T KOG0057|consen 584 TTQTS 588 (591)
T ss_pred ccccc
Confidence 87654
No 30
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.5e-80 Score=756.83 Aligned_cols=524 Identities=23% Similarity=0.263 Sum_probs=446.8
Q ss_pred HHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 23 SIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGY 102 (1133)
Q Consensus 23 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (1133)
+++++.+++++ .++++++++++..+.....|+++++++|..... .. . .........++++.++..++.++..+
T Consensus 3 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (529)
T TIGR02868 3 RILPLLQPRTR-RLVVAILLGALALGSAVALLGVSAWLISRAAEM---PP--V-LYLSVAAVAVRAFGIGRAVFRYLERL 75 (529)
T ss_pred hHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ch--h-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556554433 334455555555666666678899999975422 10 0 00111111122344556777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 041277 103 CWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLW 182 (1133)
Q Consensus 103 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1133)
+..+.+.++..++|.++|+|++++|.+||++ . ++|++++|+++|++.+++.+...+..++..+..++++++++++++|
T Consensus 76 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (529)
T TIGR02868 76 VGHDAALRSLGRLRVRVYDRLARLALAGRRR-F-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSV 153 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcccccc-C-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999996 6 8999999999999999999999888889999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHH
Q 041277 183 RLAIVGFPFVVLLVIPGLMYGRT-LMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQ 261 (1133)
Q Consensus 183 ~l~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 261 (1133)
.+++++++.+|++.++...+.++ .++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+.
T Consensus 154 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (529)
T TIGR02868 154 PAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRA 233 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888876665444444 45666777888899999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041277 262 GLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKR 340 (1133)
Q Consensus 262 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~ 340 (1133)
....+...+ ..++..+..++++|+|++++.+|.+|+|.++++..+......|+..+...+..++++.++.+|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~ 313 (529)
T TIGR02868 234 ARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGA 313 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888877777 6666677777888999999999999999999999888888889988888999999999999999999987
Q ss_pred CCCCCCCCCc-ccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 341 VPKIDSDSME-GEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 341 ~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
+++.+..... ........+.|+|+||+|+|+++ +++|+|+||++++||++|||||||||||||+++|+|+|+|++|+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 391 (529)
T TIGR02868 314 KGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGE 391 (529)
T ss_pred CCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 6543211110 11111234579999999999753 35999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 420 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
|.+||+|++++ .+++|++|+||||+|++|++||+|||.+|.|+.++++++++++.+++++++.++|+|+||.+||+|.+
T Consensus 392 I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 470 (529)
T TIGR02868 392 VTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGAR 470 (529)
T ss_pred EEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCc
Confidence 99999999999 99999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCc
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~ 558 (1133)
|||||||||+||||++++|+|||||||||+||+++|+.|++.+.+..+++|+|+||||+
T Consensus 471 LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 471 LSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999988899999999995
No 31
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.7e-82 Score=727.10 Aligned_cols=464 Identities=32% Similarity=0.513 Sum_probs=435.9
Q ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 663 PSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHY 742 (1133)
Q Consensus 663 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1133)
..+++++.+.+|+|+++..+.++.++........|.+++++++..+..+. ...........+.++.++..++++++.+
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~--~~~~~~~~~~~l~~l~~~~a~~~~~r~~ 210 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD--SADALKRACTILLGLFLIGALANAIRGG 210 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999998765111 1222333455667777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041277 743 NFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAW 822 (1133)
Q Consensus 743 ~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w 822 (1133)
++.++++++..+||.++|+++++++++||| +|.+|+|++|+++|+..+.+.++..+...+.+.+..++++.+|+.++|
T Consensus 211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 211 LLQYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 999999999999999999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHH
Q 041277 823 RLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQS 902 (1133)
Q Consensus 823 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~ 902 (1133)
+|+++.++.+|++.+...++.++.++.+++.+++.++++....|.+++++|||+|+.|+++.+||.+..++..+...|.+
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a 368 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA 368 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC
Q 041277 903 WYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRY 982 (1133)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~ 982 (1133)
...+.++..+.+...+....+++||++++..|.+|.|++..|++|......++..+..++++++++..|.+|+|+++|++
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEE
Q 041277 983 TKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062 (1133)
Q Consensus 983 ~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~ 1062 (1133)
|.+++. .. ..|....|.|+|+||+|+||+||+.+||||+||+|+|||+||+||||||||||+++||+|||||++|+|+
T Consensus 449 P~i~~~-G~-~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 449 PRIPLT-GT-LAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred CCCCCC-Cc-cccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 988654 21 2232568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1063 IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1063 IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+||+||++++.++||++||+|.|||+||+|||+|||+||.+ .++||||++|||+||+||||+++|+||||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T 596 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNT 596 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999987 78999999999999999999999999998
No 32
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.1e-79 Score=752.25 Aligned_cols=538 Identities=26% Similarity=0.362 Sum_probs=471.6
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh
Q 041277 52 LVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYF 131 (1133)
Q Consensus 52 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f 131 (1133)
+.|++++.++|.+... .. . ......+...++++.++..++.+++.++..+.+.++..++|.++|++++++|.++|
T Consensus 13 ~~p~~~~~iid~~~~~---~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~ 87 (569)
T PRK10789 13 IPPKVVGIIVDGVTEQ---HM-T-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFY 87 (569)
T ss_pred HHHHHHHHHHHHhccC---Cc-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4456888899875422 10 0 01122233333444455667778888888889999999999999999999999999
Q ss_pred ccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 132 DLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVA-FLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLA 210 (1133)
Q Consensus 132 ~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 210 (1133)
++ . ++|++++|+++|++.++..+...+..++..++.++++++++ ++++|++++++++++|+++++...+.++.++..
T Consensus 88 ~~-~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 165 (569)
T PRK10789 88 LR-H-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERF 165 (569)
T ss_pred cC-C-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 95 6 89999999999999999888777777777766666665555 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 041277 211 RKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRM 289 (1133)
Q Consensus 211 ~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ 289 (1133)
++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....+...+ ...+..++.++++++|+++
T Consensus 166 ~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l 245 (569)
T PRK10789 166 KLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWM 245 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988888888777776666 5555566667788899999
Q ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEE
Q 041277 290 VMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFA 369 (1133)
Q Consensus 290 v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 369 (1133)
+.+|.+|+|.++++..+......|+..+...+..+++++++.+|+.++++.+++.+.. ....+...+.|+++|++|+
T Consensus 246 v~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~---~~~~~~~~~~I~~~~v~~~ 322 (569)
T PRK10789 246 VVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG---SEPVPEGRGELDVNIRQFT 322 (569)
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCCCCCCCCcEEEEEEEEE
Confidence 9999999999999999999888999999999999999999999999999876543211 1111223467999999999
Q ss_pred cCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCc
Q 041277 370 YPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF 449 (1133)
Q Consensus 370 y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 449 (1133)
|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+|+|++|+|.+||+++.+++..++|++++||+|+|++|
T Consensus 323 y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 401 (569)
T PRK10789 323 YPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF 401 (569)
T ss_pred CCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec
Confidence 9753 346999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccC
Q 041277 450 ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529 (1133)
Q Consensus 450 ~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~ 529 (1133)
++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|+|+|||||||+
T Consensus 402 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~ 481 (569)
T PRK10789 402 SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSA 481 (569)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccc
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhcC
Q 041277 530 LDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTT 601 (1133)
Q Consensus 530 lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 601 (1133)
||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+++++|+|+++++ .++.|+++++.|..
T Consensus 482 LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~y~~l~~~~~~ 552 (569)
T PRK10789 482 VDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ-QSGWYRDMYRYQQL 552 (569)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH-cCChHHHHHHHhhh
Confidence 999999999999998888999999999999999999999999999999999999997 67899999987653
No 33
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.9e-79 Score=754.37 Aligned_cols=569 Identities=35% Similarity=0.513 Sum_probs=489.3
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLE 100 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1133)
++.++++.++.++ .+.+.+++.++.++.....|++++.++|...... +. ........+++++.++..++.+++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~ 78 (576)
T TIGR02204 6 LAALWPFVRPYRG-RVLAALVALLITAAATLSLPYAVRLMIDHGFSKD--SS----GLLNRYFAFLLVVALVLALGTAAR 78 (576)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc--cH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544333 3345555666666666777788999999743221 11 112222233334444556677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 101 GYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM 180 (1133)
Q Consensus 101 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1133)
.+...+.+.++..++|..++++++++|.++|++ . ++|++++|+++|++.+++.+...+..++.+++.+++.+++++++
T Consensus 79 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (576)
T TIGR02204 79 FYLVTWLGERVVADIRRAVFAHLISLSPSFFDK-N-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFIT 156 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-C-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999985 6 89999999999999999999888888888898999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK 260 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 260 (1133)
+|++++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+
T Consensus 157 ~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (576)
T TIGR02204 157 SPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQ 236 (576)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888899999999999999999999999999999999999999999999999999988887777
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041277 261 QGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIK 339 (1133)
Q Consensus 261 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 339 (1133)
.......... ..++..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..+.+++.+.+|+.++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~ 316 (576)
T TIGR02204 237 RIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQ 316 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7666555555 445555566677889999999999999999999988888899999999999999999999999999998
Q ss_pred cCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 340 RVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
.+++.+..........+..+.|+++||+|+|+.+.++++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~ 396 (576)
T TIGR02204 317 AEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR 396 (576)
T ss_pred CCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 65442211111111112235799999999998543356999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 420 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
|.+||.++++++..++|++|+|+||+|++|++||+|||.++.|+.++++++++++.++++++++++|+|++|.+||+|.+
T Consensus 397 I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~ 476 (576)
T TIGR02204 397 ILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVT 476 (576)
T ss_pred EEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCc
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
||||||||++||||++++|+++|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|
T Consensus 477 LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQG 556 (576)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeee
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CcchhccccchhhHHHHHhh
Q 041277 580 SHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~~~ 599 (1133)
+|+++++ +++.|++++..|
T Consensus 557 ~~~~l~~-~~~~~~~l~~~~ 575 (576)
T TIGR02204 557 THAELIA-KGGLYARLARLQ 575 (576)
T ss_pred cHHHHHH-cCChHHHHHhhc
Confidence 9999988 688999988654
No 34
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.9e-79 Score=808.14 Aligned_cols=506 Identities=23% Similarity=0.287 Sum_probs=443.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHH
Q 041277 85 HLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFV 164 (1133)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~ 164 (1133)
.+++++++..++.++..++..+.+.+...++|.+++++++++|++|||+ . ++|+++||+++|++.+++.+...+..++
T Consensus 1010 iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~-~~G~ilnR~s~Di~~id~~l~~~~~~~~ 1087 (1522)
T TIGR00957 1010 VYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-T-PSGNLVNRFSKELDTVDSMIPPVIKMFM 1087 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-C-ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777778888888889999999999999999999999999995 6 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHH
Q 041277 165 MNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTI 244 (1133)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~ 244 (1133)
..++.+++.++++++.+|.+++++++++++++++..++.+..++..+...+..+.+.+++.|+++|+++||+|++|+.+.
T Consensus 1088 ~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~ 1167 (1522)
T TIGR00957 1088 GSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFI 1167 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHH
Confidence 99999999999999999988877777777777778888888888888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 245 NEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVM-YHGAQGGTVFAVGASIAVGGLALGAGLPNLK 322 (1133)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~-~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1133)
+++.+..+...+..........+... ..++.. .++++.+...+. .|.+++|.+.+++.+......++..+...+.
T Consensus 1168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~ 1244 (1522)
T TIGR00957 1168 HQSDLKVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSS 1244 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888777766554444443333 333222 233444555544 5789999999999999888899999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCcccccc--cccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCC
Q 041277 323 YFSEAMAAGERIMEMIKRVPKIDSDSMEGEILE--NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGS 400 (1133)
Q Consensus 323 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGs 400 (1133)
.+..+++|++|+.++++.+++.+.......+++ +..|.|+|+||+|+|+++. +++|+|+||+|++||++||||+|||
T Consensus 1245 ~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGs 1323 (1522)
T TIGR00957 1245 EMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGA 1323 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCC
Confidence 999999999999999987655321111111121 2457899999999997542 4699999999999999999999999
Q ss_pred cHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHH
Q 041277 401 GKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480 (1133)
Q Consensus 401 GKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~ 480 (1133)
|||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||||.||+|||||||.... +++++++++|++.+++++
T Consensus 1324 GKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~ 1402 (1522)
T TIGR00957 1324 GKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKT 1402 (1522)
T ss_pred CHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHH
Confidence 9999999999999999999999999999999999999999999999999999999998332 589999999999999999
Q ss_pred HHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcch
Q 041277 481 FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLST 560 (1133)
Q Consensus 481 ~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 560 (1133)
++.++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||+++
T Consensus 1403 ~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~t 1482 (1522)
T TIGR00957 1403 FVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT 1482 (1522)
T ss_pred HHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred hhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHh
Q 041277 561 IRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 561 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
+.+||||+||++|+|+|.|+|+||++ +++.|+++++.
T Consensus 1483 i~~~DrIlVld~G~IvE~G~~~eLl~-~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1483 IMDYTRVIVLDKGEVAEFGAPSNLLQ-QRGIFYSMAKD 1519 (1522)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHh-CCCHHHHHHHH
Confidence 99999999999999999999999998 47999999875
No 35
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-78 Score=671.18 Aligned_cols=553 Identities=22% Similarity=0.298 Sum_probs=459.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 33 MFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQA 112 (1133)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (1133)
+..+.++++++++..+....+..+.|++|...... ...... .+...+...=.+++++.+..|...+..+.+..++.
T Consensus 15 ~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAia---g~~~~f-~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL 90 (573)
T COG4987 15 KFGLLLGIVLAILTLLASIGLLTLSGWFISASAIA---GLAYIF-NVMLPSAGVRGLAILRTAARYVERLVSHDATFRVL 90 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc---cHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44566777777776666666667889998864322 111000 11111112224677888889999999999999999
Q ss_pred HHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HH
Q 041277 113 TRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGF-PF 191 (1133)
Q Consensus 113 ~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l-~~ 191 (1133)
.++|.++|+++...+..-..+ . ++|+++||+..|++.+++.+-..+...+..+....+..+.+-+++|.+++... ..
T Consensus 91 ~~lRv~~f~kl~p~sp~~~~r-~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~l 168 (573)
T COG4987 91 SALRVRLFEKLEPLSPALLLR-Y-RSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLIL 168 (573)
T ss_pred HHHHHHHHHhhccCChHHHHh-c-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999998885 7 99999999999999999999888888888777777777777788898876544 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 041277 192 VVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG- 270 (1133)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 270 (1133)
+.+++++...+.+..++..++..+..+.+.+.+.|.+.|....+.||.++.+.+.+.+......+...|...+.++...
T Consensus 169 l~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~ 248 (573)
T COG4987 169 LLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAI 248 (573)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777788888888888999999999999999999999999999999999999998888888888887776
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 041277 271 SNGVTFGIWS-FLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGL-PNLKYFSEAMAAGERIMEMIKRVPKIDSDS 348 (1133)
Q Consensus 271 ~~~~~~~~~~-~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 348 (1133)
..++..+..+ .++|.+ ..+-.|..+......+++.++....++..+. ..+....+...|++|+.++++++|+...+.
T Consensus 249 ~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~ 327 (573)
T COG4987 249 LLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPD 327 (573)
T ss_pred HHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCc
Confidence 5444444443 344544 3445566654333333333333334444444 456788899999999999999887654331
Q ss_pred CcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC
Q 041277 349 MEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID 428 (1133)
Q Consensus 349 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~ 428 (1133)
. . .+.....++++||+|+|+++ +.++|+|+||++++||++||+|+|||||||++++|.|-|+|++|+|.++|.++.
T Consensus 328 ~--~-~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~ 403 (573)
T COG4987 328 E--Q-TATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIA 403 (573)
T ss_pred c--c-cCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChh
Confidence 1 1 11111279999999999976 457999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 429 KLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 429 ~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
.++.+.+|+.|++++|.+.+|++|+|||+.+++|++++|++++++++++++++++..|+|++|.+||.|..||||||||+
T Consensus 404 ~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRL 483 (573)
T COG4987 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL 483 (573)
T ss_pred hCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcccc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
+|||+|++|+|++||||||.+||+.||+++.+.+.+..+|||+|+||||+..++.||||+||++|+++|+|+|.+|+. +
T Consensus 484 AlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~-~ 562 (573)
T COG4987 484 ALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA-N 562 (573)
T ss_pred HHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred chhhHHHHH
Q 041277 589 SGLYTSLVR 597 (1133)
Q Consensus 589 ~~~~~~~~~ 597 (1133)
++.|+++++
T Consensus 563 ~g~~~~l~q 571 (573)
T COG4987 563 NGRYKRLYQ 571 (573)
T ss_pred ccHHHHHhc
Confidence 899998865
No 36
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=7.4e-78 Score=733.15 Aligned_cols=523 Identities=24% Similarity=0.299 Sum_probs=456.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhc-CCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 36 MVLGYIGAIGDGFSTPLVLFLTSKFMNNIG-GVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATR 114 (1133)
Q Consensus 36 ~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1133)
+.++++++++.++..+..|+++++++|.+. ... . ...+..+...+++++++..++.+++.++..+.+.++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGE--P----LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQ 78 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--C----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777778889999999763 210 1 112233344445566677888999999999999999999
Q ss_pred HHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041277 115 MRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVL 194 (1133)
Q Consensus 115 lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~ 194 (1133)
+|.++|++++++|..+|++ . ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|+
T Consensus 79 lr~~l~~~l~~~~~~~~~~-~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l 156 (529)
T TIGR02857 79 LRERLLAAVAALGPGWLQG-R-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPL 156 (529)
T ss_pred HHHHHHHHHHhCCchhhcc-C-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999996 6 9999999999999999999998888888888888888999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 041277 195 LVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNG 273 (1133)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 273 (1133)
..++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+....... ..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (529)
T TIGR02857 157 IPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLEL 236 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888899999999999999999999999999999999999999999888888777776665555 444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc
Q 041277 274 VTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEI 353 (1133)
Q Consensus 274 ~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~ 353 (1133)
+..+...+++.++++.+..|.+|+|.++++..+......|+..+...+..+++++.+++|+.++++.+++... . ...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~--~~~ 313 (529)
T TIGR02857 237 FATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-K--APV 313 (529)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-C--cCC
Confidence 4444444545567777779999999999988888888889999999999999999999999999985432211 1 111
Q ss_pred cccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH
Q 041277 354 LENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 354 ~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~ 433 (1133)
+....+.|+++||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+|.+||+|+++++.+
T Consensus 314 ~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 314 TAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAD 392 (529)
T ss_pred CCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHH
Confidence 11123579999999999854 24699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
++|++++||+|+|++|++||+|||.++.++.++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||
T Consensus 393 ~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred HHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEE
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999988899999999999999999999985
No 37
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-77 Score=795.39 Aligned_cols=510 Identities=21% Similarity=0.287 Sum_probs=411.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHH
Q 041277 82 NTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLP 161 (1133)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~ 161 (1133)
+...+++++++..++.+++.++..+.+.+...++|.+++++++++|++|||+ + ++|+++||+++|++.+++.+...+.
T Consensus 955 ~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~-~~G~IlnR~s~Di~~id~~l~~~~~ 1032 (1622)
T PLN03130 955 YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-N-PLGRIINRFAKDLGDIDRNVAVFVN 1032 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-C-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777888899999999999999999999999999999999995 6 9999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchH
Q 041277 162 NFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGES 241 (1133)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~ 241 (1133)
.++..++.+++.++++++++|...++++++..+++.+..++.+..++..+......+...+++.|+++|+++||+|++++
T Consensus 1033 ~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~ 1112 (1622)
T PLN03130 1033 MFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 1112 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHH
Confidence 99999888888888888888744333333322333344455566666666667778889999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------ccHHHHHHHHHHHHHHHH
Q 041277 242 KTINEFSSALQGSVQLGLKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHG---------AQGGTVFAVGASIAVGGL 312 (1133)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~---------~t~g~~~~~~~~~~~~~~ 312 (1133)
++.+++.+..+...+..........+... .+..+..+++++.+...+..+. .++|.++ .+......
T Consensus 1113 ~f~~~~~~~~~~~~~~~~~~~~~~~wl~~--~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~l---s~~~~~~~ 1187 (1622)
T PLN03130 1113 RMAEINGRSMDNNIRFTLVNMSSNRWLAI--RLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLL---SYALNITS 1187 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHH---HHHHHHHH
Confidence 87777666555544332221111111111 0111111222222333344332 2233333 33444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccc--cccccEEEEEEEEEcCCCCCCccccceeEEeeCCC
Q 041277 313 ALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILE--NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGK 390 (1133)
Q Consensus 313 ~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~ 390 (1133)
++..+...+..+..+.+|++|+.++++.+++.+.......+++ +..|.|+|+||+|+|+++ .++||+|+||+|+|||
T Consensus 1188 ~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~Ge 1266 (1622)
T PLN03130 1188 LLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSE 1266 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCC
Confidence 5566666777889999999999999987665321111111111 235789999999999643 2469999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHH
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVI 470 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~ 470 (1133)
++|||||||||||||+++|+|+|+|++|+|.|||+|+++++.+++|++|++|||||.||+|||||||.++. +.++++++
T Consensus 1267 kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~ 1345 (1622)
T PLN03130 1267 KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLW 1345 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876 57899999
Q ss_pred HHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCe
Q 041277 471 EAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRT 550 (1133)
Q Consensus 471 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t 550 (1133)
+|++.+++++++.++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|++..+++|
T Consensus 1346 ~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~T 1425 (1622)
T PLN03130 1346 ESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 1425 (1622)
T ss_pred HHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhc
Q 041277 551 TIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 551 ~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
+|+||||++++.+||||+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1426 vI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1426 MLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 99999999999999999999999999999999999855789999987654
No 38
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.3e-76 Score=719.12 Aligned_cols=530 Identities=23% Similarity=0.300 Sum_probs=453.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 38 LGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRA 117 (1133)
Q Consensus 38 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 117 (1133)
+.++++++..+...+.|+++++++|...... +. ..+..+...++++.++..++.+++.++..+.+.++..++|.
T Consensus 10 ~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~--~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 83 (544)
T TIGR01842 10 IVGLFSFVINILMLAPPLYMLQVYDRVLTSG--SV----PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQ 83 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--ch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455556678899999764221 11 12222333444455667788888999999999999999999
Q ss_pred HHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 041277 118 RYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISE-KLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLV 196 (1133)
Q Consensus 118 ~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~ 196 (1133)
++|+|++++|+.. .+...+++++|++.+++.+.. .+..++..++.++ .++++++++|++++++++.+|+++
T Consensus 84 ~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~ 155 (544)
T TIGR01842 84 PIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999732 345678899999999998877 3444455444444 456789999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 041277 197 IPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVT 275 (1133)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 275 (1133)
++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+.....+.... ..++.
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888889999999999999999999999999999999999999999988888887777776666 55566
Q ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccc
Q 041277 276 FGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILE 355 (1133)
Q Consensus 276 ~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 355 (1133)
.+..++++++|++++.+|.+|+|.++++..+......|+..+...+..++++..+.+|+.++++.+++.+. . ...+
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-~---~~~~ 311 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP-A---MPLP 311 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC-C---CCCC
Confidence 66667788899999999999999999999998888999999999999999999999999999986544321 1 1112
Q ss_pred cccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH
Q 041277 356 NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 356 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~ 435 (1133)
...+.|+++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.+||+++.+++.+++
T Consensus 312 ~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 312 EPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 234579999999999753 2468999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 436 RSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
|++++||||+|++|++|++|||.++.++.++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||++
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999877778899999999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++|++||||||||+||+++++.+.+.+++.. +++|+|+||||++.++.||+|++|++|++++.|+|+|+++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999999875 6899999999999998899999999999999999999865
No 39
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.3e-76 Score=784.41 Aligned_cols=508 Identities=22% Similarity=0.250 Sum_probs=427.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHH
Q 041277 89 LALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNAS 168 (1133)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~ 168 (1133)
+.++..++.+++.+.....+.+...++|.+++++++++|++|||+ + ++|+++||+++|++.+++.+...+..++..++
T Consensus 1007 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~-~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~ 1084 (1560)
T PTZ00243 1007 IVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-T-PLGRILNRFSRDIDILDNTLPMSYLYLLQCLF 1084 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-C-CccHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555556677778899999999999999999995 6 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHH
Q 041277 169 LFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFS 248 (1133)
Q Consensus 169 ~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~ 248 (1133)
.+++.++++++.+|.+.+++++++.+++.+..++.+..++..+......+.+.+++.|+++|+++||+|++|+.+.++|.
T Consensus 1085 ~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~ 1164 (1560)
T PTZ00243 1085 SICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEAL 1164 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHH
Confidence 99999999999998655554444445555666677777778887888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 249 SALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMV--MYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFS 325 (1133)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v--~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (1133)
+..+...+...+......+... ..++..+...++.+++.... ..+.+++|.+..++.+......++..+...+..+.
T Consensus 1165 ~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le 1244 (1560)
T PTZ00243 1165 RRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVE 1244 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988887776665544444443 44443333333333443332 34557888877777777778888889999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCC------------------------Cccc-----ccccccccEEEEEEEEEcCCCCCC
Q 041277 326 EAMAAGERIMEMIKRVPKIDSDS------------------------MEGE-----ILENVLGEVEFKCVQFAYPSRPES 376 (1133)
Q Consensus 326 ~~~~a~~ri~~~l~~~~~~~~~~------------------------~~~~-----~~~~~~~~i~~~~v~~~y~~~~~~ 376 (1133)
.++.|++||.++++..|+++... .... +.....|.|+|+||+|+|++. .+
T Consensus 1245 ~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~ 1323 (1560)
T PTZ00243 1245 ADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LP 1323 (1560)
T ss_pred HHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CC
Confidence 99999999999997543321000 0000 011134789999999999754 34
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++||||||||.||+||||||
T Consensus 1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreN 1403 (1560)
T PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQN 1403 (1560)
T ss_pred ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC-CCEEEEeCcccCCChHHH
Q 041277 457 ILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA-PRILLLDEATSALDSESE 535 (1133)
Q Consensus 457 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~-~~illlDE~ts~lD~~~~ 535 (1133)
|..+. +++++++++|++.+++++++.++|+|+||.+||+|.+|||||||||||||||+++ |+|||||||||+||++++
T Consensus 1404 Idp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te 1482 (1560)
T PTZ00243 1404 VDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALD 1482 (1560)
T ss_pred hCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHH
Confidence 98753 6889999999999999999999999999999999999999999999999999996 899999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhc
Q 041277 536 RVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 536 ~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
+.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1483 ~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1483 RQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999988899999999999999999999999999999999999999756889999987653
No 40
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-76 Score=783.79 Aligned_cols=513 Identities=20% Similarity=0.274 Sum_probs=414.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHH
Q 041277 82 NTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLP 161 (1133)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~ 161 (1133)
+...+++++++..++.+++.++..+.+.+...++|.+++++++++|++|||+ + ++|+++||+++|++.+++.+...+.
T Consensus 952 ~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~-~~G~ilnr~s~Di~~id~~l~~~~~ 1029 (1495)
T PLN03232 952 YIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-N-PTGRVINRFSKDIGDIDRNVANLMN 1029 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-C-CchHHHHHhHhhHHHHHHHHHHHHH
Confidence 4445566677778888899999999999999999999999999999999995 6 9999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchH
Q 041277 162 NFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGES 241 (1133)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~ 241 (1133)
.++..++.+++++++++++++...++++++..+++.+..++.+..++..+......+...+.+.|+++|+++||+|++|+
T Consensus 1030 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~ 1109 (1495)
T PLN03232 1030 MFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYD 1109 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHH
Confidence 88888888888888877777643333322222223333444455566777777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcc-----HHHHHHHHHHHHHHHHHHH
Q 041277 242 KTINEFSSALQGSVQLGLKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMY-HGAQ-----GGTVFAVGASIAVGGLALG 315 (1133)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-~~~t-----~g~~~~~~~~~~~~~~~~~ 315 (1133)
++.+++.+..+...+..........+... .+..++..++++.|...+.. +.+. .+.+..++.+......++.
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 1187 (1495)
T PLN03232 1110 RMAKINGKSMDNNIRFTLANTSSNRWLTI--RLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLS 1187 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 88877776665554443322222111111 11111222222233333332 3221 1122223344555566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccc--cccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEE
Q 041277 316 AGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILE--NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVA 393 (1133)
Q Consensus 316 ~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ 393 (1133)
.+...+..+..+.+|++||.++++.+++.+.......+++ +..|.|+|+||+|+|+++ .+++|+|+||+|++||++|
T Consensus 1188 ~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gekva 1266 (1495)
T PLN03232 1188 GVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVG 1266 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEE
Confidence 8888888999999999999999987665332111111111 235789999999999643 2469999999999999999
Q ss_pred EEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHH
Q 041277 394 LVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAA 473 (1133)
Q Consensus 394 ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~ 473 (1133)
||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.||+|||||||.++. +++++++++|+
T Consensus 1267 IVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al 1345 (1495)
T PLN03232 1267 VVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEAL 1345 (1495)
T ss_pred EECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999875 68999999999
Q ss_pred HHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEE
Q 041277 474 KASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTII 553 (1133)
Q Consensus 474 ~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~ 553 (1133)
+.++++++++++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+
T Consensus 1346 ~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~ 1425 (1495)
T PLN03232 1346 ERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLV 1425 (1495)
T ss_pred HHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhc
Q 041277 554 IAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 554 itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1426 IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1426 IAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred EeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999999999999999999999999855569999997654
No 41
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-77 Score=642.43 Aligned_cols=490 Identities=30% Similarity=0.427 Sum_probs=434.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHH
Q 041277 102 YCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLF-FGCYLVAFLM 180 (1133)
Q Consensus 102 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 180 (1133)
.++...++.....+--+.|.|++++++.|+-+ . .+|.+...+..-..-|+..+...+...+..++-+ ..+.++...+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~-r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE-R-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh-c-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 34556777778888889999999999999985 6 8898877776666667666666666555555433 3344556678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK 260 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 260 (1133)
+|+.+++.++++.+++++............++..++-++++....+++-+..+||.|+.|+.+..+|...++.+.+...|
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999999998888887777777778888888999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041277 261 QGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIK 339 (1133)
Q Consensus 261 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 339 (1133)
.....++... ...+...........++..+..|.+|+|+++....++.+...|+..+......+.+++.-.++.+++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 7776666555 445555566667778888899999999999998899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCcccccc-cccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 340 RVPKIDSDSMEGEILE-NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 340 ~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
.+.+... .+..++.. ...|.+.|+||+|.|.. .+++|+++||++++|+++|+|||||+||||++++|.|||++++|
T Consensus 242 ~~~~v~d-~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 242 VEAEVSD-APDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred cchhhcc-CCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 7765432 22222222 34678999999999975 45799999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCC
Q 041277 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 419 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 498 (1133)
.|.+||+|+++...+.+|+.||.||||..||++|+..||.||+|.++++|+..+++.+++++|++.+|+||+|.|||+|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
.||||||||+||||+++++|+||+|||+|||||.+||+.|+..|++..+|+|.++|+||++++-+||+|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccchhhHHHHH
Q 041277 579 GSHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~~~ 597 (1133)
|+|+||++ .+|.|++||.
T Consensus 479 g~h~~ll~-~~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLA-AGGLYAEMWR 496 (497)
T ss_pred CcHHHHHH-cCChHHHHhc
Confidence 99999999 5999999985
No 42
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-75 Score=728.06 Aligned_cols=512 Identities=23% Similarity=0.326 Sum_probs=445.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhH
Q 041277 81 KNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKL 160 (1133)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~ 160 (1133)
.+...+.+++++..++..++.+.+...+.+.+.+|+.+++++++|.|++|||. + |+|+|+||+++|++.+++.+...+
T Consensus 859 ~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt-T-P~GRILNRFSkD~~~vD~~Lp~~~ 936 (1381)
T KOG0054|consen 859 FYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT-T-PTGRILNRFSKDIDTVDVLLPFTL 936 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC-C-CccchhhhcccchHHHHHhhHHHH
Confidence 34555667777888888899999999999999999999999999999999995 6 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcch
Q 041277 161 PNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGE 240 (1133)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e 240 (1133)
..++..++.+++.++++.+..|+..++++++..+++.+..+|.+..++..+-.....+...+++.|+++|+.|||+|+.|
T Consensus 937 ~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~ 1016 (1381)
T KOG0054|consen 937 EFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKE 1016 (1381)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 241 SKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLP 319 (1133)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~ 319 (1133)
+++.+++.+..+...+...-..-..-+..- ..++..+....+..+.. +...+..++|.+-..+.|.+.+...+..+..
T Consensus 1017 ~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~v-l~~~~~~~~g~vGLslsyal~lt~~l~~~vR 1095 (1381)
T KOG0054|consen 1017 ERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAV-LLPSGLISPGLVGLSLSYALQLTGLLQWLVR 1095 (1381)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888776654432222222221 33333322222211111 1112226678777777888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCC-cccccc--cccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEc
Q 041277 320 NLKYFSEAMAAGERIMEMIKRVPKIDSDSM-EGEILE--NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVG 396 (1133)
Q Consensus 320 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~~~~--~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG 396 (1133)
....+...++|+|||.++.+.++| .+... ...+++ +.+|+|+|+|++.+|.++ .++||+||||+|+|||++||||
T Consensus 1096 ~~~elEn~m~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVG 1173 (1381)
T KOG0054|consen 1096 QSSELENNMVSVERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVG 1173 (1381)
T ss_pred HHHHHHhcchhhhHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeC
Confidence 999999999999999999997665 22221 121232 346999999999999754 3579999999999999999999
Q ss_pred CCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHh
Q 041277 397 GSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKAS 476 (1133)
Q Consensus 397 ~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~ 476 (1133)
++|||||||+++|.|+.+|.+|+|.|||.|+.++..++||++++++||||.||+||+|.|+. +..+++++++|+|++.+
T Consensus 1174 RTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLD-Pf~e~sD~~IW~ALe~~ 1252 (1381)
T KOG0054|consen 1174 RTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLD-PFDEYSDDEIWEALERC 1252 (1381)
T ss_pred CCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccC-cccccCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998 44578999999999999
Q ss_pred chHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEec
Q 041277 477 NAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAH 556 (1133)
Q Consensus 477 ~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH 556 (1133)
++.+++.++|.|+|+.|.|+|.|+|-||||.+||||||+++++||+|||||+++|++|...||+.|++..+++|||.|+|
T Consensus 1253 ~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAH 1332 (1381)
T KOG0054|consen 1253 QLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAH 1332 (1381)
T ss_pred ChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHh
Q 041277 557 RLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 557 ~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
|++++.+||||+|||+|+|+|.|+|++|++++++.|+++...
T Consensus 1333 Rl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1333 RLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred ccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 999999999999999999999999999998778888765543
No 43
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=6.7e-73 Score=689.59 Aligned_cols=535 Identities=16% Similarity=0.168 Sum_probs=441.0
Q ss_pred cchHHHHHhhhc-hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 041277 18 NGSFRSIFMHAD-GVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVA 96 (1133)
Q Consensus 18 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1133)
+..+++++++++ ++ +..++++++++++.++...+.+++++.+++..... . . .. ...++++.++.+++
T Consensus 2 ~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~---~--~--~~----~~~~~~~~~~~~~~ 69 (555)
T TIGR01194 2 KAAIGEILALLRSPF-PAITAFSIALGLAGGLAIIALLASINNAIHEENFL---G--Q--GS----LFSFGGLCLLALLF 69 (555)
T ss_pred CchHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---c--c--hH----HHHHHHHHHHHHHH
Confidence 345677888776 44 44455666666666666666667778777632110 0 0 01 11233345566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 041277 97 CFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLV 176 (1133)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1133)
.++..++.++.+.++..++|.++|+|++++|+++|++ . ++|++++|+++|++.+++++.. ++.++..++.+++.+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~ 146 (555)
T TIGR01194 70 RIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR-R-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAY 146 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh-c-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999996 6 9999999999999999998864 67778888888888999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchH--HHHHHHHHHHHHH
Q 041277 177 AFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGES--KTINEFSSALQGS 254 (1133)
Q Consensus 177 ~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~--~~~~~~~~~~~~~ 254 (1133)
+++++|.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.+.|+++||+|+.++ .+.+++.+..++.
T Consensus 147 l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~ 226 (555)
T TIGR01194 147 LAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNI 226 (555)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHH
Confidence 99999999999998889888888888888888888889999999999999999999999999954 5678888888888
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 255 VQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGER 333 (1133)
Q Consensus 255 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 333 (1133)
++...+.........+ ..++..+...+.+++|++. |.+|+|.++++..+......|+..+...+..++++.+|++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~r 303 (555)
T TIGR01194 227 ADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQR 303 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666555444434 3344444444455555543 78999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCC--CCc-cc----ccccccccEEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHH
Q 041277 334 IMEMIKRVPKIDSD--SME-GE----ILENVLGEVEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKST 404 (1133)
Q Consensus 334 i~~~l~~~~~~~~~--~~~-~~----~~~~~~~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKST 404 (1133)
+.++++.+++.+.. ... .. .+....+.|+++||+|+|++.+ ++++|+|+||++++||+++|+|||||||||
T Consensus 304 i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKST 383 (555)
T TIGR01194 304 LADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKST 383 (555)
T ss_pred HHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHH
Confidence 99998632111000 000 00 1112246799999999997532 235999999999999999999999999999
Q ss_pred HHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHh
Q 041277 405 VIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQ 484 (1133)
Q Consensus 405 ll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 484 (1133)
|+++|+|+|+|++|+|.+||.++++++.+++|++++||+|||++|++|+++|+ .++.++++++++++.++++++++.
T Consensus 384 l~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~ 460 (555)
T TIGR01194 384 LAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKI 460 (555)
T ss_pred HHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcc
Confidence 99999999999999999999999999999999999999999999999999995 356788899999999999999999
Q ss_pred CCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHH-HH-hCCCeEEEEecCcchhh
Q 041277 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD-KA-VVGRTTIIIAHRLSTIR 562 (1133)
Q Consensus 485 l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~-~~-~~~~t~i~itH~~~~~~ 562 (1133)
+|+||||. .+|||||||||+||||++++|+|+|||||||+||+++++.+++.+. .. .+++|+|+||||+++++
T Consensus 461 lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~ 535 (555)
T TIGR01194 461 EDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE 535 (555)
T ss_pred cccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence 99999994 6899999999999999999999999999999999999999988764 33 46899999999999999
Q ss_pred cCCEEEEEeCCeEEee
Q 041277 563 NADVIAVVQDGQVMET 578 (1133)
Q Consensus 563 ~~d~i~~l~~G~i~~~ 578 (1133)
.||+|++|++|+++|.
T Consensus 536 ~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 536 LADQIIKLAAGCIVKD 551 (555)
T ss_pred hCCEEEEEECCEEEEe
Confidence 9999999999999864
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.7e-72 Score=740.58 Aligned_cols=501 Identities=20% Similarity=0.262 Sum_probs=417.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Q 041277 91 LGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLF 170 (1133)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~ 170 (1133)
++..++.+++.+++.+.+.+...++|.++++++++.|++||++ . ++|+++||+++|++.+++.+...+..++..++.+
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~-~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~ 1013 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-M-KAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIV 1013 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778888889999999999999999999999999995 6 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHH
Q 041277 171 FGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSA 250 (1133)
Q Consensus 171 ~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~ 250 (1133)
++.++++++++|.+++++++++++++.+..++.+..++..+......+.+.+++.|+++|+.+||+|++|+.+.+++.+.
T Consensus 1014 i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~ 1093 (1490)
T TIGR01271 1014 LGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKA 1093 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHH
Confidence 99999999999988776665555666666777777777777788888999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 251 LQGSVQLGLKQGLAKGLAIG-SNGVTFGI--WSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEA 327 (1133)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1133)
.+...+..........+... ..++..+. .+++++++. ...+.|.+..++.+...+..++..+...+..+..+
T Consensus 1094 ~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~ 1168 (1490)
T TIGR01271 1094 LNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGL 1168 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88654443332222222222 22211111 111122222 22344444444445555566677777788889999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCc--------------ccccc--cccccEEEEEEEEEcCCCCCCccccceeEEeeCCCE
Q 041277 328 MAAGERIMEMIKRVPKIDSDSME--------------GEILE--NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKT 391 (1133)
Q Consensus 328 ~~a~~ri~~~l~~~~~~~~~~~~--------------~~~~~--~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~ 391 (1133)
+.|++||.++++.+++.+..... ...++ +..|.|+|+||+|+|++. .+++|+|+||+|++||+
T Consensus 1169 ~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Gek 1247 (1490)
T TIGR01271 1169 MRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQR 1247 (1490)
T ss_pred HHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCE
Confidence 99999999999876553211100 00011 234789999999999753 35799999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHH
Q 041277 392 VALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIE 471 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~ 471 (1133)
+||||+||||||||+++|+|+++ ++|+|+|||+|+++++.+++|++|+||||||.||+|||||||.... +.+++++++
T Consensus 1248 vaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~ 1325 (1490)
T TIGR01271 1248 VGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWK 1325 (1490)
T ss_pred EEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHH
Confidence 99999999999999999999997 7999999999999999999999999999999999999999998643 578999999
Q ss_pred HHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeE
Q 041277 472 AAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTT 551 (1133)
Q Consensus 472 ~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~ 551 (1133)
+++.+++++++.++|+|+||.|||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~Tv 1405 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTV 1405 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhcCC
Q 041277 552 IIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTT 602 (1133)
Q Consensus 552 i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 602 (1133)
|+||||++++.+||+|+||++|+|+|.|+|++|++ +++.|+++++.+...
T Consensus 1406 I~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~-~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1406 ILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN-ETSLFKQAMSAADRL 1455 (1490)
T ss_pred EEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc-CCcHHHHHHHHhChh
Confidence 99999999999999999999999999999999997 688999998876543
No 45
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=5.9e-70 Score=599.91 Aligned_cols=534 Identities=24% Similarity=0.316 Sum_probs=454.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 35 LMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATR 114 (1133)
Q Consensus 35 ~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1133)
++.++++..++ .+.....|+++-++-|.+....+ ...+....++.+++.+...++.+++.....+++.++..+
T Consensus 25 ~~~v~lfS~~I-NiL~L~~~lyMLQVyDRVL~S~s------~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~ 97 (580)
T COG4618 25 FIGVGLFSAVI-NLLALTGPLYMLQVYDRVLPSRS------VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQ 97 (580)
T ss_pred HHHHHHHHHHH-HHHHHhhhHHHHHHHhhhccCCC------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443 33344445566678887654321 122333334445556667788899999999999999999
Q ss_pred HHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041277 115 MRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVL 194 (1133)
Q Consensus 115 lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~ 194 (1133)
+...+|....+.+..-- ..|+=..- -+|.++++.+++..-+..+.+.-.+.+.+.++|.++++++++.++...+
T Consensus 98 L~~~v~~a~~~~~l~~~-----~~g~~~Q~-LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~i 171 (580)
T COG4618 98 LNGPVFAASFSAPLLRR-----GSGDGLQP-LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAII 171 (580)
T ss_pred hccHHHHHHHhhHHhhc-----CCCccccc-hhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987766532 23332233 3699999999987554444444444556788899999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 041277 195 LVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNG 273 (1133)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 273 (1133)
++.+.++-.+..++..++..+...+.+..+.-+..|.++|++.|......++|.+....+.....+..-..+.... +..
T Consensus 172 Lv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~ 251 (580)
T COG4618 172 LVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRA 251 (580)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8888888888888888888899999999999999999999999999999999999999998888877777776666 667
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc
Q 041277 274 VTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEI 353 (1133)
Q Consensus 274 ~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~ 353 (1133)
+-......++..|+|++++|++|+|.+++....+.....|+-.....+.++..++.|.+|+.++++..|..++ ..+
T Consensus 252 ~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~ 327 (580)
T COG4618 252 LRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMP 327 (580)
T ss_pred HHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCC
Confidence 7777788889999999999999999999888777788889999999999999999999999999988765332 234
Q ss_pred cccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH
Q 041277 354 LENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 354 ~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~ 433 (1133)
.+..++.+.++++++.=|+. ++++|+|+||++++||.+|||||||||||||.++|.|.++|.+|.|++||-|+++++.+
T Consensus 328 LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e 406 (580)
T COG4618 328 LPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406 (580)
T ss_pred CCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHH
Confidence 45667899999999976544 57899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
++-++|||.|||..||+|||.|||+--.++.+.+++.+|++.++.||.|.++|+||||.||+.|..|||||||||+||||
T Consensus 407 ~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARA 486 (580)
T COG4618 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARA 486 (580)
T ss_pred HhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999999985556788999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+|.||.+++||||-|+||.+.|..+.++|...+ +|.|+|+||||++.+..+|+|++|++|++...|+.+|+++
T Consensus 487 lYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred HcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHH
Confidence 999999999999999999999999999998875 6999999999999999999999999999999999999876
No 46
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=5.1e-67 Score=638.22 Aligned_cols=508 Identities=20% Similarity=0.233 Sum_probs=392.7
Q ss_pred HHHHHHHHHHHhHHHH-HHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 37 VLGYIGAIGDGFSTPL-VLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRM 115 (1133)
Q Consensus 37 ~~~~~~~~~~~~~~p~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 115 (1133)
+++++++++..++... .+++.+.++|..... . ..+. .++++.++..++.+++.++..+.+.++..++
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~----~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (547)
T PRK10522 16 ISVMALSLASAALGIGLIAFINQRLIETADTS----L----LVLP----EFLGLLLLLMAVTLGSQLALTTLGHHFVYRL 83 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----c----hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444444443 345667788854211 0 1111 1112222334567788888889999999999
Q ss_pred HHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 041277 116 RARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLL 195 (1133)
Q Consensus 116 r~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~ 195 (1133)
|.+++++++++|+++|++ + ++|++++|+++|++.+...+. .++.++.+++.++++++++++++|.+++++++++|+.
T Consensus 84 R~~l~~~ll~~~~~~~~~-~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~ 160 (547)
T PRK10522 84 RSEFIKRILDTHVERIEQ-L-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWMAVT 160 (547)
T ss_pred HHHHHHHHHhCCHHHHhc-c-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999996 6 899999999999999998765 4677888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 041277 196 VIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGE---SKTINEFSSALQGSVQLGLKQGLAKGLAIG-S 271 (1133)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 271 (1133)
+++..++.++.++..++.++..+++++.+.|.++|+++++ ++.+ +.+.++|++..++..+...+.......... .
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (547)
T PRK10522 161 IWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWS 239 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8888899999999888999999999999999999999996 4443 456788888887777666655544433322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc
Q 041277 272 NGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEG 351 (1133)
Q Consensus 272 ~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~ 351 (1133)
..+......+.+++++.. ..+ +.+.+..+.++......|+..+...+..++++..+.+|+.++++.+++.+.. ..
T Consensus 240 ~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~--~~ 314 (547)
T PRK10522 240 NIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP--RP 314 (547)
T ss_pred HHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc--cc
Confidence 222222222233333322 112 3333333333444455788888889999999999999999997654322111 11
Q ss_pred cccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC
Q 041277 352 EILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431 (1133)
Q Consensus 352 ~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~ 431 (1133)
. +.+..+.|+++||+|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.+||+++++++
T Consensus 315 ~-~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~ 391 (547)
T PRK10522 315 Q-AFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQ 391 (547)
T ss_pred c-ccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCC
Confidence 1 11113579999999999743 35899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
.+++|++|+||+|||.+|++|++|| + ++.+++++.++++..++.+++.. |+|. .+|.+||||||||++||
T Consensus 392 ~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lA 461 (547)
T PRK10522 392 PEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALL 461 (547)
T ss_pred HHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999 3 34566677777777666555432 3331 14789999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
||++++|++||||||||+||+++++.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|.
T Consensus 462 Ral~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 462 LALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999987653 48999999999999999999999999999986
No 47
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.5e-65 Score=617.39 Aligned_cols=460 Identities=25% Similarity=0.409 Sum_probs=413.0
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
+.+++....++|+.+.-.++.+++.+++..+.|++...++|....... .+......+.+++.+++..++.+++.+++
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr~~~~ 218 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLRTYLI 218 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667666666666677777777777777777776543221 22333445556667778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
.+.+.++..++-.++|+|++++|++||. ++++|++++|+ +|.+.|++++.......+..+...++.+++|++++|+|
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L 295 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKL 295 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 57999999999 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1133)
++++++.+|+.++...+..+.+++..++..+..+..+++..|+++|++|||+.+.|.++..+|++...++.+..++....
T Consensus 296 ~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~ 375 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKL 375 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Q 041277 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTK 984 (1133)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 984 (1133)
......+..++..+..++++|+|++++.+|.+|.|.++++.++...+..|+..+.+++.+++....+.+|+.++++.+++
T Consensus 376 ~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E 455 (709)
T COG2274 376 ALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPE 455 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 985 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
.+.+.. ....+...|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++|
T Consensus 456 ~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~d 533 (709)
T COG2274 456 QEGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533 (709)
T ss_pred cccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 432221 12344567999999999999754 3479999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1065 G~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+.++++++||++|++||||++||+|||||||++|+| ++++||+++||+.|++||||+++|.||||
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p-~~~~e~i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP-EATDEEIIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence 999999999999999999999999999999999999988 57899999999999999999999999998
No 48
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=8.1e-65 Score=625.98 Aligned_cols=531 Identities=14% Similarity=0.119 Sum_probs=433.7
Q ss_pred chHHHHHhhhchhhH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDM----FLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSW 94 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1133)
..++++++++.|+.+ ..+++.+++.++..++....|++.+.++|.+... +...+...+..+.++++...++..
T Consensus 77 ~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~---~~~~f~~~l~~~~l~~~~~~~~~~ 153 (659)
T TIGR00954 77 GKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR---SPRNFAWILFKWFLIAPPASFINS 153 (659)
T ss_pred HHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667888766543 2455666666667777778889999999987543 211122222233333444555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 041277 95 VACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCY 174 (1133)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (1133)
+..++..++......++..++|.+++++....++.+||+ ++|++.+|+++|++.+.+.+...+..++..++.+++++
T Consensus 154 ~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~ 230 (659)
T TIGR00954 154 AIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYS 230 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777788888999999999999988999999984 68999999999999999999999999999999998888
Q ss_pred HHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHH
Q 041277 175 LVAFL-MLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQG 253 (1133)
Q Consensus 175 ~~~~~-~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~ 253 (1133)
+.++. ++|.+++++++.+|+.+++..++.+++.+..++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++
T Consensus 231 ~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~ 310 (659)
T TIGR00954 231 FKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYR 310 (659)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHH
Confidence 87776 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHH-h----cCccHHHHHH-HHHH---HHHHHHHHHHHHHHH
Q 041277 254 SVQLGLKQGLAKGLAIG-SNGVTFG--IWSFLCYYGSRMVM-Y----HGAQGGTVFA-VGAS---IAVGGLALGAGLPNL 321 (1133)
Q Consensus 254 ~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~g~~~v~-~----~~~t~g~~~~-~~~~---~~~~~~~~~~~~~~~ 321 (1133)
..+...+..+..+...+ ..++... ..++.++.|...+. . |.+|.|.+++ ++.+ +.....|+..+...+
T Consensus 311 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~ 390 (659)
T TIGR00954 311 LVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAG 390 (659)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887776 5554432 22222333342332 2 6899988766 4433 445577888999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCC--------C-Ccc-------------cccccccccEEEEEEEEEcCCCCCCccc
Q 041277 322 KYFSEAMAAGERIMEMIKRVPKIDSD--------S-MEG-------------EILENVLGEVEFKCVQFAYPSRPESIIF 379 (1133)
Q Consensus 322 ~~~~~~~~a~~ri~~~l~~~~~~~~~--------~-~~~-------------~~~~~~~~~i~~~~v~~~y~~~~~~~~l 379 (1133)
..++++.++.+|+.++++.+++.+.. . .+. .......+.|+++||+|+|+++ +++|
T Consensus 391 ~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il 468 (659)
T TIGR00954 391 RDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLI 468 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceee
Confidence 99999999999999999764332100 0 000 0011123569999999999743 3599
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhc
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILF 459 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~ 459 (1133)
+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|.+|++|++|||.+
T Consensus 469 ~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~ 537 (659)
T TIGR00954 469 ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIY 537 (659)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhc
Confidence 999999999999999999999999999999999999999999864 457999999999999999999998
Q ss_pred CC-------CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCCh
Q 041277 460 GK-------EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532 (1133)
Q Consensus 460 ~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~ 532 (1133)
+. +..+++++.++++.+++++++++ |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+
T Consensus 538 ~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~ 615 (659)
T TIGR00954 538 PDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV 615 (659)
T ss_pred CCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 74 33567889999999999999887 999999986 5679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 533 ESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 533 ~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
++++.+.+.+++. |+|+|+||||++.++.||+|++|+.
T Consensus 616 ~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 616 DVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999998774 8999999999999999999999973
No 49
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=5.1e-62 Score=594.05 Aligned_cols=456 Identities=19% Similarity=0.246 Sum_probs=389.6
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHHH
Q 041277 667 RLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIY--AFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 667 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
+++++.+++++.+.+.++++++..++....|++++.+++....... ...++ ...++++.++..++.++..++.
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (529)
T TIGR02868 3 RILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-----VLYLSVAAVAVRAFGIGRAVFRYLERLVG 77 (529)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777788888888888888888876432111 11111 1112234455677788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
.+.+.++..++|.++|+|++++|.+||+ ++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+
T Consensus 78 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 155 (529)
T TIGR02868 78 HDAALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPA 155 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999998 57999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICF-YARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
++++++.+|++.++. ++..+..++..++.++..++..+++.|.++|+++||+|+.|+++.++|++..++..+...+..+
T Consensus 156 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (529)
T TIGR02868 156 ALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAAR 235 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988878776555 4444444555667777889999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Q 041277 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYT 983 (1133)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 983 (1133)
..+...++...+..+..++++++|++++..|.++.|.+++++.+......|+..+......+.++..+.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (529)
T TIGR02868 236 ATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKG 315 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999998655
Q ss_pred CCCCCCCC-CCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEE
Q 041277 984 KIEPEDPE-GHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062 (1133)
Q Consensus 984 ~~~~~~~~-~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~ 1062 (1133)
+.+..+.+ ....++..++|+|+||+|+|+++ .++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 393 (529)
T TIGR02868 316 PRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT 393 (529)
T ss_pred CcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 42211111 11111234689999999999743 3599999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1063 IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1063 IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+||+|++++ .+++|++|++|||||+||+|||||||++|+| +++|||+++||+.|+++|||++||+||||
T Consensus 394 i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT 462 (529)
T TIGR02868 394 LDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP-DATDEELWAALERVGLADWLRSLPDGLDT 462 (529)
T ss_pred ECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCC-CCCHHHHHHHHHHcCCHHHHHhCcccccc
Confidence 999999999 9999999999999999999999999999976 57999999999999999999999999998
No 50
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.5e-61 Score=603.14 Aligned_cols=463 Identities=29% Similarity=0.447 Sum_probs=409.8
Q ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 663 PSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHY 742 (1133)
Q Consensus 663 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1133)
..+++++++.+++++.+...+++.++.+++....|++.+.+++........ .........++++.++..++.+++.+
T Consensus 147 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (711)
T TIGR00958 147 DLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP---PALASAIFFMCLLSIASSVSAGLRGG 223 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888989999999998876432111 11122233444555666778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041277 743 NFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAW 822 (1133)
Q Consensus 743 ~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w 822 (1133)
++.+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|
T Consensus 224 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~ 301 (711)
T TIGR00958 224 SFNYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSP 301 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999998 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHH
Q 041277 823 RLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQS 902 (1133)
Q Consensus 823 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~ 902 (1133)
++++++++..|+.++...+..++.++..++.++..++.++.+.|+++|+++||+|+.|+++.++|.+..++..+...+..
T Consensus 302 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 381 (711)
T TIGR00958 302 RLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKA 381 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC
Q 041277 903 WYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRY 982 (1133)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~ 982 (1133)
...+....+...+..+..++++++|++++..|.++.|++++++.+......++..+.....+++++..+.+|++++++.+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 461 (711)
T TIGR00958 382 LAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRK 461 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77776666667777777888889999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEE
Q 041277 983 TKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062 (1133)
Q Consensus 983 ~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~ 1062 (1133)
++.++.. ...+.+..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 462 ~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 539 (711)
T TIGR00958 462 PNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL 539 (711)
T ss_pred CCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 5432211 11222345789999999999876666899999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1063 IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1063 IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+||+|+++++.+++|++|++|||||+||+|||||||+||.| +.+|||+++||+.|++++||++||+||||
T Consensus 540 idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT 609 (711)
T TIGR00958 540 LDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDT 609 (711)
T ss_pred ECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCC
Confidence 99999999999999999999999999999999999999976 57899999999999999999999999997
No 51
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.7e-60 Score=582.70 Aligned_cols=454 Identities=32% Similarity=0.489 Sum_probs=400.4
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
+++++.+.+ ++ .+.++.++.++..++....+++++..++... .+ ......+...++++.++..++.++..+..
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 76 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-AD----LGELLELLLLLLLLALLGGVLRALQSYLG 76 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 66 7777777777778888888888888887665 11 11222334445555556777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
.+.+.+...++|.+++++++++|++||+ ++++|++++|+++|++.++..+.+....+...++.+++.+++++.++|++
T Consensus 77 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 154 (567)
T COG1132 77 SRLGQKIVADLRRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRL 154 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8888999999999999999999999999 57899999999999999999999987777778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1133)
++++++..|++.+...+..++.++..+..++..++.++.+.|+++|+++||+|+.++...+++.+..+...+...+..+.
T Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (567)
T COG1132 155 ALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRL 234 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888887778888899999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Q 041277 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTK 984 (1133)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 984 (1133)
.+...++...+..+...+++++|+.++..+.++.|.+.+++.+......|+..+......++.+..+++|++++++.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 314 (567)
T COG1132 235 EALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPE 314 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 985 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
+++.+.. .....|+|+|+||+|+|++ +.++|+|+||+|+|||++||||||||||||++++|+|||||++|+|+||
T Consensus 315 ~~~~~~~---~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~id 389 (567)
T COG1132 315 VEDPPDP---LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILID 389 (567)
T ss_pred ccCCCCC---CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEEC
Confidence 3322211 2234588999999999973 4469999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1065 G~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+||+++++++||++|++|||||+||+|||+|||+||+|+ +||||+++|||.|++||||+++|+||||
T Consensus 390 g~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~-at~eei~~a~k~a~~~d~I~~lp~g~dt 457 (567)
T COG1132 390 GIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD-ATDEEIEEALKLANAHEFIANLPDGYDT 457 (567)
T ss_pred CEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC-CCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 9999999999999999999999999999999999999875 8999999999999999999999999998
No 52
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4e-60 Score=584.80 Aligned_cols=460 Identities=18% Similarity=0.268 Sum_probs=388.1
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 664 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
.+++++++.+++++.+.++++++++..++.+..|++++.+++.....+.+ ......+...++++.++..++.+++.++
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERV 86 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788899999999999999999999999999999988865421111 1112223444555566777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+.+.+..++..++.+++.++++++++|+
T Consensus 87 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (588)
T PRK11174 87 GFKAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWA 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 824 LALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 824 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
+++++++++|+.+++..+..+..++..++.++..++.++.+.|.++|+++||+|+.|+++.++|++..++..+...+..+
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK11174 165 AGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLR 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888899999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041277 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKAL---------FETFMILVSTGRVIADAGSMTTDIAKGSDAVGS 974 (1133)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r 974 (1133)
......++...+..+..+++.+++++.+ .|.+++|.+ +.++++......|+..+...+..+.++..+.+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 323 (588)
T PRK11174 245 MAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAES 323 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666666655556665544 377777654 222244455678899999999999999999999
Q ss_pred HHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 975 VFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 975 i~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+.++++.+++.++. .....+....++|+|+||+|.|++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|
T Consensus 324 i~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 324 LVTFLETPLAHPQQ-GEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HHHHHcCCCcccCC-CccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 99999865432111 111111112467999999998863 346999999999999999999999999999999999999
Q ss_pred CCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1055 DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1055 dp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|++|+|++||+|+++++.+++|++|+||||||+||+|||||||+||+| +++|||+++||+.|+++|||++||+||||
T Consensus 401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~-~~~~eei~~al~~a~l~~~i~~lp~G~dT 477 (588)
T PRK11174 401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP-DASDEQLQQALENAWVSEFLPLLPQGLDT 477 (588)
T ss_pred -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC-CCCHHHHHHHHHHhCHHHHHHhccccccc
Confidence 999999999999999999999999999999999999999999999976 58999999999999999999999999998
No 53
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2e-59 Score=589.24 Aligned_cols=461 Identities=18% Similarity=0.268 Sum_probs=401.8
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 664 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
.+++++.+.+++++.+...++++++..++....|+++..++|....... ......+...++++.++..++.+++.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (708)
T TIGR01193 143 SLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIFL 219 (708)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777788887777777888888888889999988886543211 1112223334445556677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
..+.+.++..++|.++|+|++++|++||+ ++++|++++|++ |.+.+++.+.......+..++.+++.++++++++|+
T Consensus 220 ~~~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (708)
T TIGR01193 220 LNVLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML 296 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999998 579999999998 899999988888777777777888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 824 LALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 824 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
+++++++.+|+++++.++..+..++..++..+..++.++.+.|+++|+++||+||.|+++.++|++..++..+...+..+
T Consensus 297 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 376 (708)
T TIGR01193 297 LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQK 376 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888989888999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Q 041277 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYT 983 (1133)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 983 (1133)
.......+...+..+..++++|+|++++..|.+|+|+++++..+...+..|+..+...+.+++.+..+.+|+.++++.++
T Consensus 377 ~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 456 (708)
T TIGR01193 377 ADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDS 456 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88887778777777888889999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE
Q 041277 984 KIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI 1063 (1133)
Q Consensus 984 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I 1063 (1133)
+.+... .....+...|+|+|+||+|+|++ +.++|+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|++
T Consensus 457 e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 457 EFINKK-KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred cccccc-cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 432111 10112234578999999999963 346999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1064 DDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1064 dG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
||+|++++++++||++|+||||||+||+|||||||++|.+++++|||+++||+.|+++|||++||+||||
T Consensus 534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt 603 (708)
T TIGR01193 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQT 603 (708)
T ss_pred CCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCc
Confidence 9999999999999999999999999999999999999842358999999999999999999999999997
No 54
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4e-59 Score=584.44 Aligned_cols=457 Identities=20% Similarity=0.285 Sum_probs=399.1
Q ss_pred HHHHHHh-hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVAL-NAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 665 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
+++++++ .+++++.+...++++++..++....|+++..+++....... ......+.+.++++.++..++.+++.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 199 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLA 199 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 45667777777777778888888888888888876542211 1122233444555666678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
..+.+.++..++|.++|+|++++|++||+ ++++|++++|++ |++.+++.+...+...+..+..+++.++++++++|.
T Consensus 200 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (686)
T TIGR03797 200 VLRLETRMDASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWK 276 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 579999999997 799999998888777777777778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 824 LALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 824 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
+++++++++|+.+++.++..+..++..++..+..++.++.+.|+++|+++||+++.|+++.++|++..++..+...+...
T Consensus 277 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 356 (686)
T TIGR03797 277 LALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQR 356 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888899999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Q 041277 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYT 983 (1133)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 983 (1133)
.......+...+..+..++++|+|++++.+|.+|.|+++++..+...+..|+..+...+.+++.+..+.+|+.++++.++
T Consensus 357 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 436 (686)
T TIGR03797 357 IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP 436 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE
Q 041277 984 KIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI 1063 (1133)
Q Consensus 984 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I 1063 (1133)
+.+. ....+....|.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 437 e~~~---~~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 512 (686)
T TIGR03797 437 EVDE---AKTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512 (686)
T ss_pred cccc---CcCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 3221 111122245789999999999743 356999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1064 DDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1064 dG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
||+|+++++.+++|++|++|||||+||+|||||||++|+| ++|||+++||+.|+++|+|++||+||||
T Consensus 513 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt 580 (686)
T TIGR03797 513 DGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP--LTLDEAWEAARMAGLAEDIRAMPMGMHT 580 (686)
T ss_pred CCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccc
Confidence 9999999999999999999999999999999999999976 7999999999999999999999999997
No 55
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.3e-58 Score=566.27 Aligned_cols=461 Identities=19% Similarity=0.242 Sum_probs=392.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChh-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHD-EIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
+++++++.+++++.+.++++++++..++....+++++.+++........ .......+....+++++++..++.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667788888888888888888888888888888888754322110 000011112223445556777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.++.++.+.+..++..++.++++++++++++|+
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLT 161 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHH
Q 041277 824 LALVMIAVQPLVII-CFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQS 902 (1133)
Q Consensus 824 l~lv~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~ 902 (1133)
+++++++++|++++ ..++..+..++..++.++..++.++.+.|.++|+++||+|+.|+++.++|++..+++.+...+..
T Consensus 162 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (574)
T PRK11160 162 LALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQA 241 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888887654 34566677777788888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Q 041277 903 WYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVS-TGRVIADAGSMTTDIAKGSDAVGSVFAVMDR 981 (1133)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~ 981 (1133)
+..+...++...+..+..++++++|+++ ..|.++.|.+++++.+... ...++..+......++++..+.+|+.++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~ 320 (574)
T PRK11160 242 NLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQ 320 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9888888888888888888889999988 4889999999888777543 4567788888899999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeE
Q 041277 982 YTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061 (1133)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I 1061 (1133)
+++.+.. +...+.+..+.|+|+||+|+|+++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 321 ~~~~~~~--~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I 397 (574)
T PRK11160 321 KPEVTFP--TTSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397 (574)
T ss_pred CCCCCCC--cccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 6543211 111112235789999999999753 2469999999999999999999999999999999999999999999
Q ss_pred EECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1062 ~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++||+|+++++.+++|++|++|||||+||+|||+|||++|+| +.+|||+++|++.+++++||++ |+||||
T Consensus 398 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~al~~~~l~~~i~~-p~GldT 467 (574)
T PRK11160 398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP-NASDEALIEVLQQVGLEKLLED-DKGLNA 467 (574)
T ss_pred EECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC-ccCHHHHHHHHHHcCCHHHHcC-ccccCc
Confidence 999999999999999999999999999999999999999987 5799999999999999999999 999998
No 56
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.4e-58 Score=580.37 Aligned_cols=459 Identities=22% Similarity=0.334 Sum_probs=400.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
+++++.+.+++++.+...++++++..++....|+++..++|....... ......+...++++.++..++.+++.++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA---FETLWVLAIGVALAIVFDFVLKTLRSYFL 211 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777777788888888888888888876542211 11122233344445566778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
.+.+.++..++|.++|+|++++|++| + ++++|++++|+ +|++.+++.+...+...+..++.+++.++++++++|.+
T Consensus 212 ~~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 287 (694)
T TIGR03375 212 DVAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPL 287 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999998 4 46899999999 79999999998888777777777778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1133)
+++.++.+|+.+++.++..++.++..++..+..++..+.+.|+++|+++||+|+.|+.+.++|++..++..+...+...+
T Consensus 288 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 367 (694)
T TIGR03375 288 VWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFL 367 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888899999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Q 041277 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTK 984 (1133)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 984 (1133)
......+...+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+.+++.+..+.+|+.++++.+++
T Consensus 368 ~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e 447 (694)
T TIGR03375 368 SNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVE 447 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999986554
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 985 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
.++.. .....+...|.|+|+||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 448 ~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 525 (694)
T TIGR03375 448 RPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525 (694)
T ss_pred CCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 22111 111112245789999999999743 3469999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1065 G~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+++++++++|++|++|||||+||+|||||||++++| +++|||+++|++.|+++|+|++||+||||
T Consensus 526 g~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T 593 (694)
T TIGR03375 526 GVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP-YADDEEILRAAELAGVTEFVRRHPDGLDM 593 (694)
T ss_pred CEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC-CCCHHHHHHHHHHcChHHHHHhCcccccc
Confidence 999999999999999999999999999999999999977 57999999999999999999999999998
No 57
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.8e-58 Score=581.29 Aligned_cols=462 Identities=20% Similarity=0.250 Sum_probs=402.3
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 664 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
.++.++.+.+++++.+...++++++..++..+.|++...+++....... ......+.+.++++.++..++.+++.++
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (710)
T TIGR03796 141 LLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR---QDWLRPLLLGMGLTALLQGVLTWLQLYY 217 (710)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777777777888888888876543211 1112223344555566677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++| +.+++++...+..++..++.+++.++++++++|+
T Consensus 218 ~~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (710)
T TIGR03796 218 LRRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPV 294 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 57999999999988 6899999888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 824 LALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 824 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
++++.++.+|+.+++.++..+..++..++.++..++..+.+.|+++|+++||+++.|+.+.++|.+..++..+...+..+
T Consensus 295 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 374 (710)
T TIGR03796 295 LTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGV 374 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888889999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Q 041277 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYT 983 (1133)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 983 (1133)
.......+...+..+..++++++|++++..|.+|+|+++++..+...+..|+..+...+..++.+..+.+|+.++++.++
T Consensus 375 ~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 454 (710)
T TIGR03796 375 LTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999998655
Q ss_pred CCCCCCC---C-CCCC-CCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCC
Q 041277 984 KIEPEDP---E-GHQP-ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK 1058 (1133)
Q Consensus 984 ~~~~~~~---~-~~~~-~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~ 1058 (1133)
+.+.... . ...+ +...|.|+|+||+|+|++. +.++|+|+||+|+|||+||||||||||||||+++|+|+|+|++
T Consensus 455 e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred ccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4321110 0 0111 2235789999999999743 3569999999999999999999999999999999999999999
Q ss_pred CeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1059 GDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1059 G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|++||+|+++++.+++|++|++|||||+||+|||||||++++| +++||++++||+.|+++|+|++||+||||
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t 607 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP-TIPDADLVRACKDAAIHDVITSRPGGYDA 607 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC-CCCHHHHHHHHHHhCCHHHHHhCcCcccc
Confidence 999999999999999999999999999999999999999999976 57999999999999999999999999997
No 58
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.3e-57 Score=555.26 Aligned_cols=449 Identities=20% Similarity=0.270 Sum_probs=386.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 676 WKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRI 755 (1133)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 755 (1133)
|+.+.++++++++.+++.+..|++++.+++........ ......+..+++++.++..++.+++.++..+.+.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQL 79 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777888888888899999988865322111 1122334455556667778889999999999999999999
Q ss_pred HHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 041277 756 RERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLV 835 (1133)
Q Consensus 756 r~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~ 835 (1133)
|.++|++++++|.+||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+++++++.+|+.
T Consensus 80 r~~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~ 157 (529)
T TIGR02857 80 RERLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLI 157 (529)
T ss_pred HHHHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999998 5799999999999999999999998899999988888889899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 041277 836 IICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSL 915 (1133)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 915 (1133)
+++.+...++.++..++.++..++..+.+.|+++|+++||+|+.|+++.++|++..++..+...+..+.......+...+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 158 PIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777887777888888889999999999999999999999999999999999999888888877777777777766
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 041277 916 ASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQP 995 (1133)
Q Consensus 916 ~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~ 995 (1133)
..+...+++.++++.+..|.+|.|.+++++.+......|+..+......++++..+.+|+.++++.+++.. + ....+
T Consensus 238 ~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~-~--~~~~~ 314 (529)
T TIGR02857 238 ATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA-G--KAPVT 314 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-C--CcCCC
Confidence 66666666667777777999999999999999999999999999999999999999999999997432211 1 11111
Q ss_pred CCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH
Q 041277 996 ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS 1075 (1133)
Q Consensus 996 ~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~ 1075 (1133)
....++|+|+||+|+||++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.++
T Consensus 315 ~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 315 AAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS 393 (529)
T ss_pred CCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHH
Confidence 1123689999999999753 346999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1076 LRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1076 LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+|+++++|||||+||+|||||||++|.| +.+|+|+++|++.++++|||++||+||||
T Consensus 394 lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt 450 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFAGTIAENIRLARP-DASDAEIRRALERAGLDEFVAALPQGLDT 450 (529)
T ss_pred HHhheEEEcCCCcccCcCHHHHHhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccc
Confidence 9999999999999999999999999876 57899999999999999999999999997
No 59
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.7e-57 Score=568.07 Aligned_cols=459 Identities=21% Similarity=0.331 Sum_probs=399.7
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
+++++.+.+++++.+...++++++..++..+.|+++..+++....... ......+.+.++++.++..++.+++.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677777777777777777778888888888886542211 11223334445556667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
...+.++..++|.++|+|++++|++||+ ++++|++++|+ +|++.+++++...+..++..++.+++.++++++++|.+
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 280 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTL 280 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 57999999999 69999999988877777777776777778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1133)
++++++.+|+++++.++..+..++..++..+..++.++.+.|+++|+++||+||.|+++.++|++..++..+...+..+.
T Consensus 281 ~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 360 (694)
T TIGR01846 281 TGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNL 360 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888878888888899999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Q 041277 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTK 984 (1133)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 984 (1133)
......+...+..+..++++|+|++++..|.+|+|+++++.++...+..|+..+......++.+..+.+|+.++++.+++
T Consensus 361 ~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 440 (694)
T TIGR01846 361 GNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTE 440 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999999986543
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 985 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
.+.. .....+...|.|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 441 ~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~id 517 (694)
T TIGR01846 441 PRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVD 517 (694)
T ss_pred ccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 2211 111122345789999999999743 3469999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1065 G~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+++++.+++|++|++|||||+||+|||||||++++| +++++++++||+.++++|+|++||+||||
T Consensus 518 g~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t 585 (694)
T TIGR01846 518 GVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-GAPFEHVIHAAKLAGAHDFISELPQGYNT 585 (694)
T ss_pred CEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC-CCCHHHHHHHHHHcChHHHHHhCcCccCc
Confidence 999999999999999999999999999999999999876 57999999999999999999999999997
No 60
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=5.7e-57 Score=556.52 Aligned_cols=460 Identities=27% Similarity=0.428 Sum_probs=395.8
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
++.++.+.+++++.+++.+++.++..++....++++..+++........ .........++++.++..++.+++.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 89 (582)
T PRK11176 13 FRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR---SVLKWMPLVVIGLMILRGITSFISSYCI 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666766666666555665556566677777777654422111 1111122233445666777888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
.+.+.++..++|.++++++.+.|.++|+ +.++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+
T Consensus 90 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 167 (582)
T PRK11176 90 SWVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1133)
++++++++|+.++...+..+..++..++.++..++..+.+.|.++|+++||+|+.|+++.++|++..+...+...+..+.
T Consensus 168 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T PRK11176 168 SLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888899999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Q 041277 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTK 984 (1133)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 984 (1133)
......+...+..+...+++++|++++..|.+++|++++++.+......|+..+...+..++++..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 327 (582)
T PRK11176 248 SSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 88888888888888888889999999999999999999999999889999999999999999999999999999875433
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 985 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
.+. . ....++..++|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 328 ~~~-~--~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 403 (582)
T PRK11176 328 KDE-G--KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLD 403 (582)
T ss_pred CCC-C--CcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEEC
Confidence 211 1 11122234689999999999753 3579999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1065 G~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+++++.+++|++|+||||||+||+|||||||++|+|++++|||+++|++.++++++|++||+||||
T Consensus 404 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt 472 (582)
T PRK11176 404 GHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_pred CEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCc
Confidence 999999999999999999999999999999999999976668999999999999999999999999998
No 61
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.4e-56 Score=550.52 Aligned_cols=458 Identities=28% Similarity=0.452 Sum_probs=406.5
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 667 RLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAY 746 (1133)
Q Consensus 667 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1133)
.++.+.+++++.++++++++++.+++.+..++++..+++....... ......+...++++.++..++.+++.++..+
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (571)
T TIGR02203 4 RLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLSW 80 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777778888888888888888888888887775443211 1122223444566677778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041277 747 MGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLAL 826 (1133)
Q Consensus 747 ~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~l 826 (1133)
.+.++...+|..+++++.+.|.++|+ +.++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++
T Consensus 81 ~~~~~~~~lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~ 158 (571)
T TIGR02203 81 VSNKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTL 158 (571)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999998 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 041277 827 VMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAG 906 (1133)
Q Consensus 827 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1133)
+++++.|+.+++.++..+..++..++.++..++..+.+.|.++|+++||+++.++++.++|++..++..+...+..+..+
T Consensus 159 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (571)
T TIGR02203 159 IVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999989999888888899999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCC
Q 041277 907 IGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIE 986 (1133)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 986 (1133)
....+...+..+...+++++|++++..|.+|+|.++++..+......|+..+......+..+..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 239 ISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999998644322
Q ss_pred CCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCc
Q 041277 987 PEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR 1066 (1133)
Q Consensus 987 ~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~ 1066 (1133)
.. ....++..++|+|+||+|+|+++ +.++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 319 ~~---~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~ 394 (571)
T TIGR02203 319 TG---TRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394 (571)
T ss_pred CC---CCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 11 11112235689999999999754 347999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1067 DIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1067 dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+++++.+++|++|+||||||+||+|||||||+++++++.+|+|+++|++.+++++++.+||+||||
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt 461 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDT 461 (571)
T ss_pred eHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccc
Confidence 9999999999999999999999999999999999976468999999999999999999999999997
No 62
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.7e-56 Score=550.59 Aligned_cols=458 Identities=20% Similarity=0.305 Sum_probs=379.5
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 664 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
.++++..+.+++++.+.+.+++.++.+++.+..|++++.+++.......... .....+.+.++++.++..++.+++.+.
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (592)
T PRK10790 10 TLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSLL 88 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777778888888888888889888886543211110 001112223444455666778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
....+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (592)
T PRK10790 89 FNRAAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR 166 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 5789999999999999999999999999999999888998999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 824 LALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 824 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
+++++++++|+.++...+..+..++..++.++..++.+.++.|.++|+++||+|+.|+++.++|.+..++..+...+..+
T Consensus 167 l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (592)
T PRK10790 167 MALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLR 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988898877777777777777777788888999999999999999999999999999999988888777776666
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC
Q 041277 904 YAGIG-LAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRY 982 (1133)
Q Consensus 904 ~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~ 982 (1133)
..+.. ..+...+..+...+++++++. +..|.++.|.++++..+......|+..+...+..++++..+.+|+.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 325 (592)
T PRK10790 247 LDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGP 325 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55443 233333333333333333343 5789999999999999999999999999999999999999999999999754
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEE
Q 041277 983 TKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062 (1133)
Q Consensus 983 ~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~ 1062 (1133)
++. . .. ...+...++|+|+||+|+||+ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 326 ~~~-~-~~--~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 326 RQQ-Y-GN--DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred Ccc-C-CC--CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 321 1 11 111223478999999999974 34699999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1063 IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1063 IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+||+|+++++++++|++|++|||||+||+|||||||++|+ +++|+|+++||++++++++|++||+||||
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt 468 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYT 468 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccc
Confidence 9999999999999999999999999999999999999996 47999999999999999999999999997
No 63
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-55 Score=498.07 Aligned_cols=443 Identities=21% Similarity=0.294 Sum_probs=393.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 682 GCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLS 761 (1133)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~ 761 (1133)
..++.++.++....+.+++...++.++..+. ......+...++++.++..++.+.+.....+++.++..+||..+++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~ 81 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLD 81 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777788887777664322 2234455666777778888999999999999999999999999999
Q ss_pred HHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041277 762 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYA 841 (1133)
Q Consensus 762 ~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~~~~~~~ 841 (1133)
++.+.+..|-. ..|+|+..+.++..++.++.+++..++++..+.+.++..++.+++++|.-+++++++.|++.+++++
T Consensus 82 ~l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 82 KLAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 842 RRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWA 921 (1133)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (1133)
..+..++.++++...+..+++++.+.++|+.|+|+|++.+...++..+..+++++..++..+......++..++.++..+
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcc
Q 041277 922 LDFWYGGRLIAD-GYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITG 1000 (1133)
Q Consensus 922 ~~~~~g~~l~~~-g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g 1000 (1133)
++..+.+..... |.++....+.++.+..-++.|+..++..++.-.++.++.+.++.+++.+.+..+...........+.
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 887776666666 8999988888888888999999999999999999999999999999865543222111011111234
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
+|+++|++|+||+.+ ++++|+||+++||+++||||+||||||||+++|+||.+|++|+|.+||+|+++++.++||+++
T Consensus 320 ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 566779999998653 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1081 ALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1081 siV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++|||+|+||+|||||||++++| +.+||||++|++++++.||++. |+|+||
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~-~~s~e~i~~al~~a~l~~~v~~-p~GLdt 448 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFVPK-PDGLDT 448 (559)
T ss_pred eeeCCCCccccccHHHHhhccCC-cCCHHHHHHHHHHhcHHHhhcC-CCcccc
Confidence 99999999999999999999987 4799999999999999999999 999997
No 64
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.5e-55 Score=540.38 Aligned_cols=463 Identities=25% Similarity=0.417 Sum_probs=395.5
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
++.++++.+++++.+.+.+++.++.+++....|+++..+++..+.... ......+..+++++.++..++.+++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (576)
T TIGR02204 6 LAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS---SGLLNRYFAFLLVVALVLALGTAARFYLV 82 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666777777777888888888888888888876442211 11122233334444555667778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
.+.+.++..++|..++++++++|.++|+ ..++|++++|+++|++.+++++...+..++..++.+++.+++++.++|.+
T Consensus 83 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (576)
T TIGR02204 83 TWLGERVVADIRRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKL 160 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999998 46899999999999999999999999998999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1133)
++++++.+|+.++..++..+..++..++..+..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+....
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (576)
T TIGR02204 161 TSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRT 240 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888898999999999999999999999999999999999999888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Q 041277 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTK 984 (1133)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 984 (1133)
......+...+..+..++++++|++++.+|.+|.|.++++..+......|+..+...+.++..+..+.+|+.++++.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~ 320 (576)
T TIGR02204 241 RALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPD 320 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 76666666666667777888899999999999999999999999999999999999999999999999999999986543
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 985 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
.+.+......+.+..+.|+|+||+|+||++++.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 321 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~ 400 (576)
T TIGR02204 321 IKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLD 400 (576)
T ss_pred CCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 22111111111122467999999999985444579999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1065 G~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+++++.+++|++|+||||||++|+|||||||++|+| +.+|+++++|+++++++++++++|+|+||
T Consensus 401 g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t 468 (576)
T TIGR02204 401 GVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP-DATDEEVEAAARAAHAHEFISALPEGYDT 468 (576)
T ss_pred CEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCcHHHHHhCCCCCCc
Confidence 999999999999999999999999999999999999976 46899999999999999999999999997
No 65
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4e-55 Score=536.22 Aligned_cols=457 Identities=19% Similarity=0.283 Sum_probs=391.0
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
+++++++.+++++.+.+.++++++..++.++.|++++.+++.....+. ...+.+.+++..++..+..++..+..
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREA 80 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788888888888888888889999999999999886543211 11122222233344445555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
.+...++..++|.++|+|++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.+
T Consensus 81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 158 (585)
T TIGR01192 81 DRLAHGRRATLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRL 158 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777888999999999999998 57899999999999999999998888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1133)
++++++++|+.+++.....++.++..++..+..++..+.+.|+++|+++||+|+.|+.+.+++++..++..+...+..+.
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (585)
T TIGR01192 159 SIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDW 238 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888877888888899999999999999999999999999999999999888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Q 041277 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTK 984 (1133)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 984 (1133)
.+....+...+..+..++++++|++++.+|.++.|.++++..+......|+..+......+..+..+.+|+.++++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 318 (585)
T TIGR01192 239 WALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQ 318 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 77777777777778888889999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 985 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
.++.. .....+...+.|+|+||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 319 ~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 395 (585)
T TIGR01192 319 REEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILID 395 (585)
T ss_pred ccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEEC
Confidence 22111 111112234689999999999742 358999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1065 G~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+++++.+++|+++++|||||++|++||+|||+++.| +++|+|+++|++.+++++++.++|+||||
T Consensus 396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t 463 (585)
T TIGR01192 396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE-GATDEEVYEAAKAAAAHDFILKRSNGYDT 463 (585)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence 999999999999999999999999999999999999976 46899999999999999999999999997
No 66
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-58 Score=499.08 Aligned_cols=393 Identities=21% Similarity=0.288 Sum_probs=329.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 041277 734 LVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIA 813 (1133)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~ 813 (1133)
++++-++.++...+..-..+++-.++|+|+..+++.|+- .+.+|+++.-+.+..+.+. ++...+.++...+.-+.++
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va 349 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVA 349 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhh
Confidence 567788888888899999999999999999999999998 4689999988888887777 6666666666666555555
Q ss_pred HHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhh
Q 041277 814 FTM-GLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQ 892 (1133)
Q Consensus 814 ~~~-~~~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~ 892 (1133)
++. ...++|+++++++.+..+.+.......-...+..|+...+..+..+...+++-+.+|||-||+|+++.++|.++..
T Consensus 350 ~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 350 MVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 543 3457999999888777666554443333333445555555566677788999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041277 893 GPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAV 972 (1133)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 972 (1133)
++.+..++......+.+-.-..+..+..+.-..+.++++..+.+++|+++.+..|+....+|+.-++.+.-.+++...-+
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDm 509 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDM 509 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhH
Confidence 99988777766655555555555555555555566677778999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhh
Q 041277 973 GSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 973 ~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
|++++++++++++.+ .|...+....+|.|+|+||+|+|. |+.|||+||||+++||++||+|||||+||||++++|+|
T Consensus 510 Enmfdllkee~eVvd-~P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR 586 (790)
T KOG0056|consen 510 ENMFDLLKEEPEVVD-LPGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR 586 (790)
T ss_pred HHHHHHhhcCchhhc-CCCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH
Confidence 999999997766532 222222233579999999999994 56789999999999999999999999999999999999
Q ss_pred hcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccC
Q 041277 1053 FYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132 (1133)
Q Consensus 1053 ~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~d 1132 (1133)
|||.++|+|+|||+||+++..++||++||+||||.+||++||..||+||+|+ +++||+++|||+|++||-|.++|+||+
T Consensus 587 ffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~-AsneevyaAAkAA~IHdrIl~fPegY~ 665 (790)
T KOG0056|consen 587 FFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPS-ASNEEVYAAAKAAQIHDRILQFPEGYN 665 (790)
T ss_pred HhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCC-CChHHHHHHHHHhhHHHHHhcCchhhh
Confidence 9999999999999999999999999999999999999999999999999984 799999999999999999999999998
Q ss_pred C
Q 041277 1133 T 1133 (1133)
Q Consensus 1133 T 1133 (1133)
|
T Consensus 666 t 666 (790)
T KOG0056|consen 666 T 666 (790)
T ss_pred h
Confidence 7
No 67
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=8.9e-55 Score=536.24 Aligned_cols=458 Identities=20% Similarity=0.326 Sum_probs=387.7
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 664 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
.+++++.+.++++..+.+.+++.++..++.+..++++..+++..... . ....+.+.++++.++..+..++..+.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (588)
T PRK13657 6 LYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK--G----DIFPLLAAWAGFGLFNIIAGVLVARH 79 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c----cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777788888888888888888888888765421 1 11112223333334444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
..+...++..+++.++|+|++++|..+|+ +.++|++++|+++|++.+...+...+..++..++.+++.++++++++|.
T Consensus 80 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK13657 80 ADRLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677778999999999999998 5789999999999999999888888888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 824 LALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 824 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
+++++++++|+.+++..+..+..++..++..+..++..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+...
T Consensus 158 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
T PRK13657 158 LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLS 237 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888777777788888889999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Q 041277 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYT 983 (1133)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 983 (1133)
.......+.+.+..+...+++++|++++.+|.+|+|+++++..+......|+..+......+..+..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (588)
T PRK13657 238 WWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVP 317 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88777788888888888889999999999999999999999999999999999999999999999999999999987644
Q ss_pred CCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE
Q 041277 984 KIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI 1063 (1133)
Q Consensus 984 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I 1063 (1133)
+.+ +.+.....+...+.|+|+||+|+||++ .++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 318 ~~~-~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i 394 (588)
T PRK13657 318 DVR-DPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILI 394 (588)
T ss_pred ccC-CCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 321 111111112234689999999999743 35999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1064 DDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1064 dG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
||+|+++++.+++|++|+||||||+||+|||||||++++| +.+|+|+++|++.++++++|+++|+||||
T Consensus 395 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt 463 (588)
T PRK13657 395 DGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP-DATDEEMRAAAERAQAHDFIERKPDGYDT 463 (588)
T ss_pred CCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC-CCCHHHHHHHHHHhCHHHHHHhCcccccc
Confidence 9999999999999999999999999999999999999976 57899999999999999999999999997
No 68
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.9e-55 Score=533.55 Aligned_cols=437 Identities=21% Similarity=0.289 Sum_probs=373.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 041277 688 LFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFE 767 (1133)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p 767 (1133)
+..++....|++++.+++........ ......|..+++++.++..++.+++.++....+.++..++|.++|++++++|
T Consensus 6 ~~~~~~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 6 IIAMLQLIPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444556677777777755322111 1122234444555556667778888888888999999999999999999999
Q ss_pred ccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 768 VGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMG-LFIAWRLALVMIAVQPLVIICFYARRVLL 846 (1133)
Q Consensus 768 ~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~w~l~lv~l~~~pl~~~~~~~~~~~~ 846 (1133)
++||+ ++++|++++|+++|++.++..+...+..++..++.++++++++ ++++|.+++++++++|+.+++.....+..
T Consensus 84 ~~~~~--~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 161 (569)
T PRK10789 84 PEFYL--RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQL 161 (569)
T ss_pred HHHHc--CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 5789999999999999999888888888887766666665555 57999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 847 KSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWY 926 (1133)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1133)
++..++.++..++..+.+.|+++|+++||+|+.|+++.++|.+..++..+...+..+..+....+...+..+...+++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (569)
T PRK10789 162 HERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88788888888999999999999999999999999999999999999988888888888877777777777778888899
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEe
Q 041277 927 GGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQN 1006 (1133)
Q Consensus 927 g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~n 1006 (1133)
|++++.+|.+|+|.++++..+......|+..+......+..+..+.+|+.++++.+++.+.. ....+..+++|+|+|
T Consensus 242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~---~~~~~~~~~~I~~~~ 318 (569)
T PRK10789 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG---SEPVPEGRGELDVNI 318 (569)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCCCCCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999865432211 111222357899999
Q ss_pred EEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccc
Q 041277 1007 VHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQE 1086 (1133)
Q Consensus 1007 VsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qd 1086 (1133)
|+|+|+.. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|+++++||||
T Consensus 319 v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 397 (569)
T PRK10789 319 RQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397 (569)
T ss_pred EEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccC
Confidence 99999743 34699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1087 PTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1087 p~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+||+|||||||++|+| +++|+++++|++.+++++++.+||+||||
T Consensus 398 ~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t 443 (569)
T PRK10789 398 PFLFSDTVANNIALGRP-DATQQEIEHVARLASVHDDILRLPQGYDT 443 (569)
T ss_pred CeeccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccc
Confidence 99999999999999976 47999999999999999999999999997
No 69
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-54 Score=479.05 Aligned_cols=436 Identities=21% Similarity=0.314 Sum_probs=356.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCh-hHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 041277 689 FGAVQPIYAFAMGSMISVYFLTDH-DEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFE 767 (1133)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p 767 (1133)
+.......|..+...++.....+. +.......-.+..|++..+...+++.++.+.+.++.+++.++.-.++|+++++++
T Consensus 42 aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld 121 (591)
T KOG0057|consen 42 AKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLD 121 (591)
T ss_pred hhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666677777777665421111 1111112234556778888889999999999999999999999999999999999
Q ss_pred ccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 768 VGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMG-LFIAWRLALVMIAVQPLVIICFYARRVLL 846 (1133)
Q Consensus 768 ~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~w~l~lv~l~~~pl~~~~~~~~~~~~ 846 (1133)
++||. +..+|.+.+.+.+-...+...+...+..++..++-+......+ .-..+..+++.+..+..+..+.+....+.
T Consensus 122 ~~~~~--~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~R 199 (591)
T KOG0057|consen 122 LSFFL--SRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWR 199 (591)
T ss_pred HHhhc--CCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHH
Confidence 99998 4679999999999999999888877777777666555444332 23455556665555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 847 KSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWY 926 (1133)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1133)
.+.+++..++.....+.+.|++.+-.+||+||.|+++.++|+..+.++.+.+.+.....++....-..+.....+.+...
T Consensus 200 n~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l 279 (591)
T KOG0057|consen 200 NRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVL 279 (591)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888899999999999999999999999999999999999999988888777777766666666777777777
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEe
Q 041277 927 GGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQN 1006 (1133)
Q Consensus 927 g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~n 1006 (1133)
|..-+..|.+|.|+++....++.+...|+..++..+.++..+..-+...+...+...++... ..++...+|.|+|+|
T Consensus 280 ~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~---~~~i~~~~~~I~F~d 356 (591)
T KOG0057|consen 280 GSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA---ALPIELFGGSIEFDD 356 (591)
T ss_pred HhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc---cCCcccCCCcEEEEe
Confidence 77778889999999999999999999999999999999998888888777665432222111 112223467899999
Q ss_pred EEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccc
Q 041277 1007 VHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQE 1086 (1133)
Q Consensus 1007 VsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qd 1086 (1133)
|+|.|+ |+++||+|+||+|++||||||||+|||||||++++|+||+| .+|+|+|||+||++++++++|+.||+||||
T Consensus 357 V~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd 433 (591)
T KOG0057|consen 357 VHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQD 433 (591)
T ss_pred eEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCc
Confidence 999996 45579999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred cccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1087 PTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1087 p~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
..||++||-+||.||+| .+++||+.++||+|++||.|.+||+||+|
T Consensus 434 ~~LFndTIl~NI~YGn~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T 479 (591)
T KOG0057|consen 434 SVLFNDTILYNIKYGNP-SASDEEVVEACKRAGLHDVISRLPDGYQT 479 (591)
T ss_pred ccccchhHHHHhhcCCC-CcCHHHHHHHHHHcCcHHHHHhccccchh
Confidence 99999999999999998 57999999999999999999999999997
No 70
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.4e-53 Score=519.96 Aligned_cols=452 Identities=14% Similarity=0.142 Sum_probs=370.2
Q ss_pred HHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNA-PEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHY 742 (1133)
Q Consensus 664 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1133)
.+++++.+.+ ++++.++++++++++.++.....++++..+++..... . .. ....++++.++..++.++..+
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~----~~---~~~~~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL-G----QG---SLFSFGGLCLLALLFRIGADI 75 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-c----ch---HHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888 8999888888888888888777777777665421100 0 00 112233445566678888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041277 743 NFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAW 822 (1133)
Q Consensus 743 ~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w 822 (1133)
+....+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++++.. +..++..++.++++++++++++|
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 152 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV 152 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999998 579999999999999999998864 67778888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchH--HHHHHHHHHhhcHHHHHHH
Q 041277 823 RLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQH--RILKMLEKAQQGPRRESIR 900 (1133)
Q Consensus 823 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~--~~~~~~~~~~~~~~~~~~~ 900 (1133)
.+++++++++|+.++...+..++.++..++.++..++.++.+.|.++|++++|+|+.++ ...+++++..++..+...+
T Consensus 153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T TIGR01194 153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999888877777777777777788888999999999999999999999953 5678888888888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q 041277 901 QSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMD 980 (1133)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~ 980 (1133)
..+.......+...+..+..++.+++|++. |.++.|.+++++++......|+..+......++++..+++|+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~ 309 (555)
T TIGR01194 233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE 309 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 665555545555555555555555666543 78999999999999999999999999999999999999999999986
Q ss_pred cCCCCCCC--CCC-CC----CCCCCcccEEEEeEEEECCCCC--CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 981 RYTKIEPE--DPE-GH----QPERITGNIELQNVHFAYPARP--DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 981 ~~~~~~~~--~~~-~~----~~~~~~g~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
...+.++. .++ .. +++...++|+|+||+|+|++.+ +.++|+|+||+|++||++|||||||||||||+++|+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 32111110 011 00 1112246899999999997532 236999999999999999999999999999999999
Q ss_pred hhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1052 RFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1052 R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|+|+|++|+|++||+|+++++.+++|+++++|+|||+||++|+++|+ .| +.++++++++++.++++++++++|+||
T Consensus 390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~-~~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GE-HASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---cc-chhHHHHHHHHHHcCCchhhccccccc
Confidence 99999999999999999999999999999999999999999999996 34 468999999999999999999999999
Q ss_pred CC
Q 041277 1132 DT 1133 (1133)
Q Consensus 1132 dT 1133 (1133)
||
T Consensus 466 ~t 467 (555)
T TIGR01194 466 ST 467 (555)
T ss_pred CC
Confidence 97
No 71
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9.7e-53 Score=512.87 Aligned_cols=443 Identities=19% Similarity=0.252 Sum_probs=374.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 674 PEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTK 753 (1133)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1133)
++++.+...++++++..++....|+.+..+++....... ......+.++++++.++..++.+++.++..+.+.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS---VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDG 79 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777888888888888886542211 11222344445555666778888999999999999999
Q ss_pred HHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041277 754 RIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGD-RTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQ 832 (1133)
Q Consensus 754 ~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~ 832 (1133)
++|.++|+|++++|+.. .|...+++++|++.+++.+.. .+..++..++.++. +++++.++|++++++++..
T Consensus 80 ~lr~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~ 151 (544)
T TIGR01842 80 ALNQPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGA 151 (544)
T ss_pred HHHHHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHH
Confidence 99999999999999843 255788999999999998877 45556665555544 4567899999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Q 041277 833 PLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFS 912 (1133)
Q Consensus 833 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1133)
|++++..++..+..++..++.++..++..+.+.|+++|+++||+|+.|+++.++|++..++..+...+..+..+....+.
T Consensus 152 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (544)
T TIGR01842 152 VVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLS 231 (544)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777777777778888889999999999999999999999999999999999999888888888888878888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 041277 913 QSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEG 992 (1133)
Q Consensus 913 ~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~ 992 (1133)
..+..+..++++++|++++.+|.+|+|.+++++.+......|+..+......++.+..+.+|+.++++.+++.++ .
T Consensus 232 ~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~- 307 (544)
T TIGR01842 232 KYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---A- 307 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---C-
Confidence 777777888889999999999999999999999999999999999999999999999999999999975443211 1
Q ss_pred CCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC
Q 041277 993 HQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH 1072 (1133)
Q Consensus 993 ~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~ 1072 (1133)
...+...+.|+|+||+|+||++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++
T Consensus 308 ~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~ 386 (544)
T TIGR01842 308 MPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWD 386 (544)
T ss_pred CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCC
Confidence 1112234689999999999743 346899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1073 LRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1073 l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
.+++|+++++|||||++|++||||||+++++ +++++++++|++.+++++++++||+||||
T Consensus 387 ~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t 446 (544)
T TIGR01842 387 RETFGKHIGYLPQDVELFPGTVAENIARFGE-NADPEKIIEAAKLAGVHELILRLPDGYDT 446 (544)
T ss_pred HHHHhhheEEecCCcccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 9999999999999999999999999998765 47899999999999999999999999997
No 72
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-52 Score=465.69 Aligned_cols=398 Identities=18% Similarity=0.299 Sum_probs=335.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHH
Q 041277 728 GLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTI 807 (1133)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~ 807 (1133)
++++...+..|...+..+.+..++..+||.++|+++...+..-.. +-++||++||+..|++.+|+.+-..+...+..+
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~ 143 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVAL 143 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence 466777888888889999999999999999999999999888777 468999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHH
Q 041277 808 SAVTIAFTMGLFIAWRLALVMIAVQPL-VIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKM 886 (1133)
Q Consensus 808 ~~~i~~~~~~~~~~w~l~lv~l~~~pl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~ 886 (1133)
+...+..+.+.+++|.+++.+..++.+ ++++.+++.++-++..+..++.++.+.+++.|.+.|....+.||+++++.+.
T Consensus 144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~ 223 (573)
T COG4987 144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA 223 (573)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 888888888888999998766544443 4555566667777778888888899999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH-HhHHH
Q 041277 887 LEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWA-LDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAG-SMTTD 964 (1133)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~-~~~~~ 964 (1133)
+.+..+.+.+...+...+..+..++..++..+... .++|.+ ..+..|..+......+++.......++..+. ..+..
T Consensus 224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 99999999999999999998888888888777666 444444 3455566664333333333334444444444 66688
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHH
Q 041277 965 IAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKS 1044 (1133)
Q Consensus 965 ~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKS 1044 (1133)
..+...|+.|+.++.+.+++...+.++. +.... .++++||+|+||++ ++++|+|+||++++|||||||||||||||
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~--~~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKS 378 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFPDEQT--ATTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKS 378 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCCcccc--CCccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHH
Confidence 8999999999999998877654331111 11112 79999999999864 55799999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHH
Q 041277 1045 TIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFI 1124 (1133)
Q Consensus 1045 TL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI 1124 (1133)
|++++|.|-|||++|+|.++|.|++.++.+++|+.|++++|.++||+||+||||++++|+ +||||+|+|++++++++++
T Consensus 379 TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~-AsDEel~~aL~qvgL~~l~ 457 (573)
T COG4987 379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD-ASDEELWAALQQVGLEKLL 457 (573)
T ss_pred HHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999985 8999999999999999999
Q ss_pred hhcccccCC
Q 041277 1125 AGLNEGYDT 1133 (1133)
Q Consensus 1125 ~~LP~G~dT 1133 (1133)
++.|+||||
T Consensus 458 ~~~p~gl~t 466 (573)
T COG4987 458 ESAPDGLNT 466 (573)
T ss_pred HhChhhhhc
Confidence 999999997
No 73
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.5e-53 Score=484.06 Aligned_cols=226 Identities=26% Similarity=0.443 Sum_probs=184.5
Q ss_pred cEEEEEEEEEcCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC----ccEEEECCeecCCCCHHH
Q 041277 360 EVEFKCVQFAYPSRPE-SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL----GGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~----~G~i~~~g~~~~~~~~~~ 434 (1133)
-++++|++..|..... ..+++||||++++||++||||.|||||||+.+.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999975422 25899999999999999999999999999999999999987 899999999998888765
Q ss_pred Hh----hhceEEecCCC-Cccc--cHHHHHh----cCCC---CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCC
Q 041277 435 LR----SQMGLVSQEPA-LFAT--SIKENIL----FGKE---DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQM 500 (1133)
Q Consensus 435 ~r----~~i~~v~Q~~~-l~~~--ti~eni~----~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 500 (1133)
+| +.|+||||+|. .++- ||.+-|. .... ....++..+.++.+++.+-... ...+.+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 56999999985 3442 6555443 2221 1123345555555555433222 3456799
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEe
Q 041277 501 SGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 501 SgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
|||||||+.||+||+.+|++||+||||++||+.++.+|.+.|+++. .|.++|+|||++..+.+ ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 58999999999999987 99999999999999
Q ss_pred ecCcchhccccchhhHH
Q 041277 578 TGSHDELIQAESGLYTS 594 (1133)
Q Consensus 578 ~g~~~~l~~~~~~~~~~ 594 (1133)
.|+.++++++....|.+
T Consensus 236 ~G~~~~i~~~p~hpYT~ 252 (539)
T COG1123 236 TGPTEEILSNPQHPYTR 252 (539)
T ss_pred ecCHHHHHhccCCcccH
Confidence 99999998755444443
No 74
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-53 Score=419.97 Aligned_cols=216 Identities=31% Similarity=0.524 Sum_probs=192.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC-CCHHHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK-LQLKWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~-~~~~~~r~~ 438 (1133)
-|+++|++++|++. .||+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++.. .+...+|++
T Consensus 2 mi~i~~l~K~fg~~---~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGDK---EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCCe---EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 38999999999854 49999999999999999999999999999999999999999999999987743 367889999
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCC---CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKE---DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+|+|+|+..||+- |+.||+.++.- ..+ .+...+.++++++.+-.+..| .+|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 9999999999965 99999998632 122 233455667778777777777 4899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcccc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
||||+.+|+++|+|||||||||+...++.+.++++. +|.|.|+|||.+.+++. ||||+.|++|+|+++|+++++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999999886 58999999999999988 9999999999999999999998754
Q ss_pred c
Q 041277 589 S 589 (1133)
Q Consensus 589 ~ 589 (1133)
.
T Consensus 228 ~ 228 (240)
T COG1126 228 K 228 (240)
T ss_pred C
Confidence 3
No 75
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-52 Score=446.14 Aligned_cols=387 Identities=23% Similarity=0.333 Sum_probs=332.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHH
Q 041277 741 HYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFT-MGLF 819 (1133)
Q Consensus 741 ~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~-~~~~ 819 (1133)
..++..++..+.+.+--+.|.|+.++++.|+- +..+|.+...+......++..+...+...+..++-+....+ +...
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl--~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~ 80 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHL--ERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRV 80 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhh--hcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 34577788889999999999999999999997 46788888888888878887777777777766665544443 4456
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHH
Q 041277 820 IAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESI 899 (1133)
Q Consensus 820 ~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~ 899 (1133)
++|+.+++.++++.+++++.....-..-...++..++.+++++...+++-+..|+|.|+.|+++..+|+..++.+.+...
T Consensus 81 ~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~ 160 (497)
T COG5265 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAI 160 (497)
T ss_pred cccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHH
Confidence 79999999888888777766555544445567778888899999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 041277 900 RQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVM 979 (1133)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l 979 (1133)
+.....+++...-..+......+....++..+..|.+|.|+++..-.++.....|+..++....++.++....++.++++
T Consensus 161 k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 161 KVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 87776666666666667777777777888888999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCC-CCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCC
Q 041277 980 DRYTKIEPEDPEGHQPE-RITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK 1058 (1133)
Q Consensus 980 ~~~~~~~~~~~~~~~~~-~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~ 1058 (1133)
+.+.+.... +..++.. ...|.|.|+||+|.|. |..|+|+|+||++++|+|+||||+||+||||+.++|+||||+++
T Consensus 241 ~~~~~v~d~-pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s 317 (497)
T COG5265 241 DVEAEVSDA-PDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317 (497)
T ss_pred ccchhhccC-CCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC
Confidence 876554322 1111112 3468999999999995 56689999999999999999999999999999999999999999
Q ss_pred CeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1059 GDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1059 G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|.|.|||+||+++..++||+.||+||||.+||++||..||+||+| .+|+||+++|+|.|++|+||++||+||||
T Consensus 318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-~at~eev~aaa~~aqi~~fi~~lP~gy~t 391 (497)
T COG5265 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSLPEGYDT 391 (497)
T ss_pred ceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-cccHHHHHHHHHHhhhhHHHHhCchhhhc
Confidence 999999999999999999999999999999999999999999998 57999999999999999999999999997
No 76
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-51 Score=497.77 Aligned_cols=211 Identities=29% Similarity=0.477 Sum_probs=175.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC--CccEEEECCeecCCCCHHH-Hh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP--LGGEIILDGVSIDKLQLKW-LR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~--~~G~i~~~g~~~~~~~~~~-~r 436 (1133)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999974 3599999999999999999999999999999999999996 8999999999998766544 45
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKED-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+++|||+|++.++.. |++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 779999999988865 999999986421 12222111 122333333 23333445567899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
||||+.+|++|||||||++||+.++..+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999998874 58899999999999875 99999999999987664
No 77
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-51 Score=506.17 Aligned_cols=219 Identities=26% Similarity=0.388 Sum_probs=176.1
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC----------
Q 041277 360 EVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID---------- 428 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~---------- 428 (1133)
-|+++|++++|+... ..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 589999999996421 246999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-hhceEEecCC--CCcc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCccccccc
Q 041277 429 KLQLK---WLR-SQMGLVSQEP--ALFA-TSIKENILFGKE---DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVG 494 (1133)
Q Consensus 429 ~~~~~---~~r-~~i~~v~Q~~--~l~~-~ti~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 494 (1133)
+.+.. .+| ++||||+|+| .+++ .||+||+.++.. .... +++.++++..++.+ .+....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------~~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE--------AQTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC--------hhhHHh
Confidence 22222 233 4799999998 5666 499999987521 1122 23334444444311 012234
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEe
Q 041277 495 ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQ 571 (1133)
Q Consensus 495 ~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~ 571 (1133)
....+||||||||++|||||+.+|++|||||||++||+.+++.+.+.++++. + |+|+|+|||+++.+.. ||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 4556899999999999999999999999999999999999999999999875 3 8999999999999865 99999999
Q ss_pred CCeEEeecCcchhcc
Q 041277 572 DGQVMETGSHDELIQ 586 (1133)
Q Consensus 572 ~G~i~~~g~~~~l~~ 586 (1133)
+|++++.|+++++..
T Consensus 244 ~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 244 QGEAVETGSVEQIFH 258 (623)
T ss_pred CCeecccCCHHHhhc
Confidence 999999998877643
No 78
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-51 Score=498.70 Aligned_cols=213 Identities=23% Similarity=0.400 Sum_probs=175.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 438 (1133)
-|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... +++
T Consensus 5 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGPV---HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCCe---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 48999999999743 48999999999999999999999999999999999999999999999999987775543 457
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCC---------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDA---------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++||+|++.++.. |++||+.++.... ..++..+ .+.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988875 9999998763210 1111111 112233333 232233445568999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
+|||||+.+|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 99999999999999999999999999999999998874 48999999999999875 9999999999998766543
No 79
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4e-49 Score=514.39 Aligned_cols=215 Identities=25% Similarity=0.418 Sum_probs=184.7
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..|+++|++++|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 2459999999999999999999999999999999999999999999999999864 45667889
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+|||||++.+|+. |++||+.++.. ..+. +++.+.++..++.+ .......+||||||||++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~-----------~~~~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH-----------KRNEEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHH
Confidence 9999999999875 99999987421 1111 23444444444433 33445568999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+.+|+++|||||||+||+.+++.+.+.|++..+|+|+|++||+++.+.. ||||++|++|++++.|++++|.+
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999998789999999999999876 99999999999999999998864
No 80
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.2e-51 Score=497.35 Aligned_cols=217 Identities=27% Similarity=0.430 Sum_probs=174.2
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCCCHH
Q 041277 360 EVEFKCVQFAYPSR-PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~~~~ 433 (1133)
-++++|++++|+.. ..+++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999987 799999999999876643
Q ss_pred H---Hh-hhceEEecCCC--Ccc-ccHHHHHhcCC---CCCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 434 W---LR-SQMGLVSQEPA--LFA-TSIKENILFGK---EDAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 434 ~---~r-~~i~~v~Q~~~--l~~-~ti~eni~~~~---~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
. +| +++|||+|++. ++. .|+++|+.++. ...+ .+++.++++..++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 3 33 57999999985 444 48999986421 0111 23344555555543211 012234468
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEE
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 576 (1133)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 37999999999999875 9999999999999
Q ss_pred eecCcchh
Q 041277 577 ETGSHDEL 584 (1133)
Q Consensus 577 ~~g~~~~l 584 (1133)
+.|+++++
T Consensus 237 ~~g~~~~~ 244 (529)
T PRK15134 237 EQNRAATL 244 (529)
T ss_pred EeCCHHHH
Confidence 87765544
No 81
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.1e-50 Score=525.55 Aligned_cols=202 Identities=24% Similarity=0.311 Sum_probs=166.9
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc----CCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY----APLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT 451 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 451 (1133)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. .|.+|+|.+||+++.+.. ...|+.++||+|++.+++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 45899999999999999999999999999999999986 578999999999886543 3456779999999888865
Q ss_pred -cHHHHHhcCC----C-----CCCHHHHH-----HHHHHhchHHHHHhCCCcccccccC-CCCCCChHHHHHHHHHHHHh
Q 041277 452 -SIKENILFGK----E-----DASMEEVI-----EAAKASNAHNFIRQLPQQYDTQVGE-RGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 452 -ti~eni~~~~----~-----~~~~~~~~-----~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSgGqkqri~iARal~ 515 (1133)
||+||+.|+. | ..+.++.. ++++.. .+.+-.+|.+|+ ....||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY-------GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHc-------CcccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 9999998852 1 11222211 122222 234445777875 45689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcc-hhh-cCCEEEEEeCCeEEeecCcchhc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLS-TIR-NADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
.+|++++|||||++||+.++..+.+.|+++. .|+|+|+++|+++ .+. .+|+|++|++|+++..|+++++.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999999999875 3899999999974 554 49999999999999999998874
No 82
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.5e-50 Score=488.23 Aligned_cols=211 Identities=26% Similarity=0.420 Sum_probs=173.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH-Hhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW-LRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 438 (1133)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999964 34899999999999999999999999999999999999999999999999987655444 3567
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCC------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKED------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
++||+|++.++.. |++||+.++... .+.++..+ .+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988865 999999986421 11221111 112233333 232233444568999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAERE 224 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999998864 47899999999999875 99999999999987654
No 83
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.2e-50 Score=484.34 Aligned_cols=209 Identities=29% Similarity=0.480 Sum_probs=170.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC--CccEEEECCeecCCCCHHH-Hhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP--LGGEIILDGVSIDKLQLKW-LRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~--~~G~i~~~g~~~~~~~~~~-~r~ 437 (1133)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999964 3489999999999999999999999999999999999987 7999999999998776544 456
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCCC------CCHHHHHHHHHHhchHHHHHhCCCcccccc-cCCCCCCChHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKED------ASMEEVIEAAKASNAHNFIRQLPQQYDTQV-GERGVQMSGGQKQRIA 509 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGqkqri~ 509 (1133)
+++||||++.++.. |++||+.++... ...++..+ .+.+.++.+ |++... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 79999999988865 999999886421 11122111 122333333 222111 2235689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 9999999999999999999999999999999998864 58899999999999876 9999999999997543
No 84
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.1e-50 Score=482.50 Aligned_cols=208 Identities=23% Similarity=0.300 Sum_probs=176.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSDT---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCCe---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 7899999999743 4899999999999999999999999999999999999999999999998887666667778899
Q ss_pred EEecCCCC--c-------cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 441 LVSQEPAL--F-------ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 441 ~v~Q~~~l--~-------~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
|++|++.+ + ..|++||+.++. ...+++.++++..++.+.... ...+||||||||++||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la 147 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQFGITALLDR-----------RFKYLSTGETRKTLLC 147 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHcCCHhhhhC-----------CcccCCHHHHHHHHHH
Confidence 99998753 2 358999987542 123455666666666554433 3358999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999998874 47899999999999876 999999999999887765443
No 85
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.2e-50 Score=489.50 Aligned_cols=205 Identities=27% Similarity=0.501 Sum_probs=165.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc--CCCccEEEEC---------------
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY--APLGGEIILD--------------- 423 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~--~~~~G~i~~~--------------- 423 (1133)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999964 34899999999999999999999999999999999996 7999999997
Q ss_pred --------CeecC-------CCC---HHHHhhhceEEecC-CCCcc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhc
Q 041277 424 --------GVSID-------KLQ---LKWLRSQMGLVSQE-PALFA-TSIKENILFGKE--DASM----EEVIEAAKASN 477 (1133)
Q Consensus 424 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~l~~-~ti~eni~~~~~--~~~~----~~~~~~~~~~~ 477 (1133)
|.++. ..+ ...+|+.++||+|+ +.+|+ .|++||+.++.. .... +++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33221 111 13456789999998 57776 499999987421 1111 23444555555
Q ss_pred hHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEe
Q 041277 478 AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIA 555 (1133)
Q Consensus 478 ~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~it 555 (1133)
+.+..+ ....+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++. .|+|+|+||
T Consensus 158 l~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 544333 3346899999999999999999999999999999999999999999999874 389999999
Q ss_pred cCcchhhc-CCEEEEEeCCeEEeec
Q 041277 556 HRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 556 H~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|+++.+.. ||+|++|++|++++.|
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g 251 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEG 251 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeec
Confidence 99999875 9999999999987544
No 86
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.7e-49 Score=479.07 Aligned_cols=211 Identities=28% Similarity=0.470 Sum_probs=178.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHh-hh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR-SQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 438 (1133)
.|+++|++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSGV---EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 48999999999743 489999999999999999999999999999999999999999999999999877766554 46
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCC--HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDAS--MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
+|||+|++.++.. |++||+.++..... .+++.++++..++. ........+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-----------LDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-----------ccccCChhhCCHHHHHHHHHHHHHH
Confidence 9999999988875 99999998753211 22334444444332 2233445689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999999999998874 58999999999999865 999999999999887765543
No 87
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-49 Score=480.87 Aligned_cols=208 Identities=25% Similarity=0.413 Sum_probs=172.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 438 (1133)
-|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~~---~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPGV---KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECCE---EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 48999999999743 48999999999999999999999999999999999999999999999999875543 456778
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKED-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|+||+|++.++.. |++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999988875 999999986421 11222111 122334433 2222334456789999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEe
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999998874 58999999999999866 99999999999874
No 88
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-51 Score=412.23 Aligned_cols=218 Identities=32% Similarity=0.531 Sum_probs=194.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+|+|||++|.+. .+++|+||+|++||+++++|||||||||++++|.|+++|++|+|++||+++++++...||++||
T Consensus 2 I~~~nvsk~y~~~---~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGNK---KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCCc---eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 7899999999743 4999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccc-cHHHHHhcCCC------CCCHHHHHHHHHHhchH--HHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE------DASMEEVIEAAKASNAH--NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~------~~~~~~~~~~~~~~~~~--~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
||-|..-||+- ||.|||.+-.. ....+++.+.+++++++ +|..+.| .+|||||+|||.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 99999999965 99999987321 11234566777777775 4777776 48999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhcccc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
|||+.+|+|+|+|||++||||.+++.+|+-+.++.+ ++|+|+|||+++.+- -+|||.+|++|+++..++|++++.++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999988754 899999999999865 59999999999999999999999765
Q ss_pred chhh
Q 041277 589 SGLY 592 (1133)
Q Consensus 589 ~~~~ 592 (1133)
...|
T Consensus 228 an~F 231 (309)
T COG1125 228 ANDF 231 (309)
T ss_pred cHHH
Confidence 4444
No 89
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-50 Score=421.77 Aligned_cols=218 Identities=33% Similarity=0.538 Sum_probs=193.9
Q ss_pred EEEEEEEEEcCCC--CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HH
Q 041277 361 VEFKCVQFAYPSR--PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WL 435 (1133)
Q Consensus 361 i~~~~v~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~ 435 (1133)
|++++|++.|+.. ....+|+|+||+|++||+.||+|+||+|||||++++.++-.|++|+|.+||+|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999853 124689999999999999999999999999999999999999999999999999888754 56
Q ss_pred hhhceEEecCCCCcc-ccHHHHHhcCCCC--C----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 436 RSQMGLVSQEPALFA-TSIKENILFGKED--A----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~-~ti~eni~~~~~~--~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
|++||++||++.|++ .||++|++|+.+- . -.+++.+.++.+++.|..++.| .+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 788999999999997 5999999997541 1 2345677788888877776666 59999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+|||||+.+|+|||.|||||||||++.+.|.+.|++.. -|-|+++|||.++.++. |||+.||++|+++|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998864 48999999999999998 9999999999999999999998
Q ss_pred cccc
Q 041277 586 QAES 589 (1133)
Q Consensus 586 ~~~~ 589 (1133)
.++.
T Consensus 231 ~~Pk 234 (339)
T COG1135 231 ANPK 234 (339)
T ss_pred cCcc
Confidence 7543
No 90
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3e-49 Score=434.73 Aligned_cols=237 Identities=27% Similarity=0.461 Sum_probs=219.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
|.|+++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|++||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 468999999999643 2458999999999999999999999999999999999998 78999999999999999999999
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|+||||+|.+|++|+++|+.... ..++++++++++.+++.+++.++|+++++.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999996432 24678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHh
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
+|+||||||++||+.+++.+++.|++..+++|+|+||||++++..||||++|++|++++.|+++++++ ..+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~-~~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN-EKSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh-CcHHHHHHHhh
Confidence 99999999999999999999999998777899999999999998899999999999999999999998 46777777754
Q ss_pred h
Q 041277 599 Q 599 (1133)
Q Consensus 599 ~ 599 (1133)
.
T Consensus 237 ~ 237 (275)
T cd03289 237 S 237 (275)
T ss_pred c
Confidence 3
No 91
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-49 Score=473.31 Aligned_cols=209 Identities=24% Similarity=0.378 Sum_probs=172.1
Q ss_pred EEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhhceE
Q 041277 363 FKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQMGL 441 (1133)
Q Consensus 363 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~ 441 (1133)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999974 348999999999999999999999999999999999999999999999999876554 345678999
Q ss_pred EecCCCCcc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 442 VSQEPALFA-TSIKENILFGKED-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 442 v~Q~~~l~~-~ti~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
|+|++.++. .|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 4999999976421 11222111 122334443 3334445566789999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 9999999999999999999999999998864 58999999999998865 999999999999876543
No 92
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.4e-50 Score=394.72 Aligned_cols=219 Identities=32% Similarity=0.499 Sum_probs=196.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc-----cEEEECCeecCC--CC
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG-----GEIILDGVSIDK--LQ 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~-----G~i~~~g~~~~~--~~ 431 (1133)
..++++|+++.|++. .+|+|||++|++++++|++|||||||||+|+++.|+.+... |+|.++|+|+.+ ++
T Consensus 6 ~~~~~~~l~~yYg~~---~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGDK---HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECch---hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 358999999999843 49999999999999999999999999999999999998875 999999999976 47
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCC------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKED------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
...+|++||+|+|.|..|+.||+||+.||..- .-++.++++++.+.+++-+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 88999999999999999999999999998531 113457788999988876543 23456778999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||+||||||.-+|+|||||||||||||.+..+|.+.|.+++++-|+|+|||+++.+.+ +|+..++..|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999999999999999998765 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
..+
T Consensus 236 F~~ 238 (253)
T COG1117 236 FTN 238 (253)
T ss_pred hcC
Confidence 764
No 93
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-48 Score=467.86 Aligned_cols=208 Identities=24% Similarity=0.413 Sum_probs=165.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+||
T Consensus 2 l~i~~ls~~~~~~---~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGAK---PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCCc---EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 7899999999743 4999999999999999999999999999999999999999999999873 3699
Q ss_pred EEecCCCCccc-cHHHHHhcCCCCC----------------CHH---HHHHH----------HHHhchHHHHHhCCCccc
Q 041277 441 LVSQEPALFAT-SIKENILFGKEDA----------------SME---EVIEA----------AKASNAHNFIRQLPQQYD 490 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~l~~g~~ 490 (1133)
|++|++.++.. |++||+.++.... ..+ .+.+. -....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988765 9999998753100 000 00000 0011122334433 232
Q ss_pred ccc-cCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEE
Q 041277 491 TQV-GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIA 568 (1133)
Q Consensus 491 t~~-~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~ 568 (1133)
... .....+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|.+ .+.|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 211 234568999999999999999999999999999999999999999999864 47899999999999876 99999
Q ss_pred EEeCCeEE-eecCcchhcc
Q 041277 569 VVQDGQVM-ETGSHDELIQ 586 (1133)
Q Consensus 569 ~l~~G~i~-~~g~~~~l~~ 586 (1133)
+|++|+++ ..|++++.++
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 99999994 7787776653
No 94
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=6.4e-46 Score=452.79 Aligned_cols=433 Identities=16% Similarity=0.154 Sum_probs=327.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 671 LNAPEWKQATLGCVGATLFGAVQPIY-AFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGE 749 (1133)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (1133)
+.+++++.+.++++++++..++.... +++...+++.... . .. . ...++++.++..++.+++.++..+.+.
T Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~----~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (547)
T PRK10522 7 VWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-S----LL--V--LPEFLGLLLLLMAVTLGSQLALTTLGH 77 (547)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c----ch--H--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777766666666553 4555555553211 0 00 0 111222233334566788888999999
Q ss_pred HHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041277 750 HLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMI 829 (1133)
Q Consensus 750 ~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l 829 (1133)
++..++|.++|++++++|++||+ ++++|++++|+++|++.++..+. .+..++..++.+++.++++++++|.++++++
T Consensus 78 ~~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l 154 (547)
T PRK10522 78 HFVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTA 154 (547)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999998 57899999999999999998765 4677888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhch---HHHHHHHHHHhhcHHHHHHHHHHHHH
Q 041277 830 AVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQ---HRILKMLEKAQQGPRRESIRQSWYAG 906 (1133)
Q Consensus 830 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1133)
+.+|+.+++.++..++.++..++.++..++.++.+.|.++|+++++ ++.+ +.+.++|++..++..+...+..+...
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (547)
T PRK10522 155 IWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHL 233 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Confidence 9999988887777777777778888889999999999999999995 5443 45678888888877766666555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCC
Q 041277 907 IGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIE 986 (1133)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 986 (1133)
....+...+.....++.+++++.+ ..+ +.+.+..+..+......|+..+......++.+..+.+|+.++++.+++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~ 310 (547)
T PRK10522 234 SAVNWSNIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAE 310 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 443333333333333333444332 122 23333333333444567899999999999999999999999875432211
Q ss_pred CCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCc
Q 041277 987 PEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR 1066 (1133)
Q Consensus 987 ~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~ 1066 (1133)
.++ ..+.+..+.|+|+||+|+||++ .++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+
T Consensus 311 --~~~-~~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 385 (547)
T PRK10522 311 --FPR-PQAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (547)
T ss_pred --ccc-ccccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 111 1111123679999999999742 36899999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1067 DIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1067 dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
|+++++.+++|+++++|||||+||++||+|| + + +.++++++++++.+++++++.. |+|
T Consensus 386 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~-~~~~~~~~~~~~~~~l~~~~~~-~~~ 443 (547)
T PRK10522 386 PVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K-PANPALVEKWLERLKMAHKLEL-EDG 443 (547)
T ss_pred ECCCCCHHHHhhheEEEecChhHHHHhhccc---c-C-chHHHHHHHHHHHcCCchhhhc-ccc
Confidence 9999999999999999999999999999999 3 2 4688899999999999988763 543
No 95
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.8e-47 Score=461.40 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=165.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 4899999999972 135999999999999999999999999999999999999999999999752 369
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCC----------------C----------HHHHHHHHHHh-------chHHHHHhC
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDA----------------S----------MEEVIEAAKAS-------NAHNFIRQL 485 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~----------------~----------~~~~~~~~~~~-------~~~~~i~~l 485 (1133)
|||+|+|.+++. |++||+.++.... . ..++.+.++.+ .+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999865 9999998753100 0 00111111111 122233332
Q ss_pred CCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-C
Q 041277 486 PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-A 564 (1133)
Q Consensus 486 ~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~ 564 (1133)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 221 1344567899999999999999999999999999999999999999999998763 599999999999876 9
Q ss_pred CEEEEEeCCeEE-eecCcchhc
Q 041277 565 DVIAVVQDGQVM-ETGSHDELI 585 (1133)
Q Consensus 565 d~i~~l~~G~i~-~~g~~~~l~ 585 (1133)
|+|++|++|+++ ..|++++..
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHH
Confidence 999999999986 667666554
No 96
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-47 Score=409.30 Aligned_cols=229 Identities=29% Similarity=0.443 Sum_probs=185.8
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCCCHH
Q 041277 360 EVEFKCVQFAYPSR-PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~~~~ 433 (1133)
-++++|++..|... ....++++|||+|++||++||||.||||||-..+.++|+++- -+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 47888988888522 235689999999999999999999999999999999999865 369999999999998888
Q ss_pred HHhh----hceEEecCCC--Cccc-cH----HHHHhcCCC---CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 434 WLRS----QMGLVSQEPA--LFAT-SI----KENILFGKE---DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 434 ~~r~----~i~~v~Q~~~--l~~~-ti----~eni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
.+|+ +|+++||||. |-+- || .|-|.+... ....+++.+.++.+++.+-- ..+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~--------~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPE--------KRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchh--------hhhhhCCcc
Confidence 7774 7999999995 2222 54 444544321 22345666777777664421 122334569
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEE
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 576 (1133)
|||||||||.||.||+.+|++||.||||.|||...+.+|.+.|+++. .|..+++|||++..++. ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99999999999999999999999999999999999999999999875 48999999999999987 9999999999999
Q ss_pred eecCcchhccccchhhHHHH
Q 041277 577 ETGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~ 596 (1133)
|+|+.+++...+...|.+..
T Consensus 238 E~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred ecCcHHHHhhCCCChHHHHH
Confidence 99998888876666666543
No 97
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.9e-45 Score=453.96 Aligned_cols=453 Identities=12% Similarity=0.082 Sum_probs=369.9
Q ss_pred HHHHHHHhhccchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNAPEWK-----QATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINI 738 (1133)
Q Consensus 664 ~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1133)
.+++++++.+|+|+ .+++.+++.++..++....+++.+.+++.....+..........+.++++++.++..+..+
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888886 4666677777778888888999999988765433221211123344445556666777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 041277 739 IQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGL 818 (1133)
Q Consensus 739 ~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 818 (1133)
+..++......++..++|++.+++....++.|||. ++|++++|+++|++.+.+.+...+..++..++.+++.++.++
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~ 234 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLL 234 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999982 689999999999999999999999999999999998888777
Q ss_pred H-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHH
Q 041277 819 F-IAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRE 897 (1133)
Q Consensus 819 ~-~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~ 897 (1133)
. ++|.+++++++.+|+..++..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+.
T Consensus 235 ~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~ 314 (659)
T TIGR00954 235 TALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEH 314 (659)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 6 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh-c----CCCCHHHHHH-HHHH---HHHHHHHHHHHHHhHHHHH
Q 041277 898 SIRQSWYAGIGLAFSQSLASCT--WALDFWYGGRLIA-D----GYISSKALFE-TFMI---LVSTGRVIADAGSMTTDIA 966 (1133)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~l~~-~----g~~t~g~l~~-~~~~---~~~~~~~~~~~~~~~~~~~ 966 (1133)
..+..++.+...++..++.... ..+.++.|...+. . |.+|.|.+++ ++.+ +.....|+..+.....+++
T Consensus 315 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~ 394 (659)
T TIGR00954 315 LNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMT 394 (659)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888887776532 2222333342332 2 7899888766 4444 4456788999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCC------CCCC--C--------------CCCCCCcccEEEEeEEEECCCCCCCccccCcc
Q 041277 967 KGSDAVGSVFAVMDRYTKIEP------EDPE--G--------------HQPERITGNIELQNVHFAYPARPDVMIFEGFS 1024 (1133)
Q Consensus 967 ~~~~s~~ri~~~l~~~~~~~~------~~~~--~--------------~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~is 1024 (1133)
++..+.+|++++++..++... +.++ + .......+.|+|+||+|+||++ .++|+|+|
T Consensus 395 ~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~is 472 (659)
T TIGR00954 395 RLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLS 472 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecce
Confidence 999999999999975432210 0000 0 0011134679999999999742 35899999
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCC-
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS- 1103 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~- 1103 (1133)
|+|++||++|||||||||||||+++|.|+|+|++|+|.+|+ |+++++|||+|++|++|++|||.++..
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 541 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSS 541 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence 99999999999999999999999999999999999999874 678999999999999999999998741
Q ss_pred -----CCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1104 -----DEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1104 -----~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
...++++++++++.+++++++++ |.||||
T Consensus 542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~ 575 (659)
T TIGR00954 542 EDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSA 575 (659)
T ss_pred hhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCccc
Confidence 23578899999999999999988 999886
No 98
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2e-46 Score=490.00 Aligned_cols=207 Identities=25% Similarity=0.385 Sum_probs=167.3
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC---ccEEEECCeecCCCCHHHHhhhceEEecCCCCcc-c
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA-T 451 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ 451 (1133)
+.+|+|+|++++|||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... |+.++||+|++.++. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 9999999999865532 678999999988876 4
Q ss_pred cHHHHHhcCCC----C--------CCHH----------HH---HHHHHHhc------hHHHHHh--CCCcccccccCC-C
Q 041277 452 SIKENILFGKE----D--------ASME----------EV---IEAAKASN------AHNFIRQ--LPQQYDTQVGER-G 497 (1133)
Q Consensus 452 ti~eni~~~~~----~--------~~~~----------~~---~~~~~~~~------~~~~i~~--l~~g~~t~~~~~-g 497 (1133)
||+||+.|+.. . .+.+ ++ .+++...+ .++.++. +.+-.||.+|+. .
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999988421 0 0011 11 11111100 1223333 344457888764 4
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcc-hh-hcCCEEEEEeCC
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLS-TI-RNADVIAVVQDG 573 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~-~~-~~~d~i~~l~~G 573 (1133)
..||||||||++|||+++.+|++++|||||++||+.+...+.+.|+++. .|+|+|+++|++. .+ ..+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 6899999999999999999999999999999999999999999999874 4899999999974 44 459999999999
Q ss_pred eEEeecCcchhc
Q 041277 574 QVMETGSHDELI 585 (1133)
Q Consensus 574 ~i~~~g~~~~l~ 585 (1133)
+++..|+.+++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999998875
No 99
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.3e-45 Score=405.60 Aligned_cols=439 Identities=20% Similarity=0.250 Sum_probs=364.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 679 ATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRER 758 (1133)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~ 758 (1133)
+....+++.+..++....++++-++.|-...+.+ .........+.+++.++..++.+++...+.+++.++...|+.+
T Consensus 25 ~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s---~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~ 101 (580)
T COG4618 25 FIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS---VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGP 101 (580)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3333444555566666667777676665443221 1222233344556667778899999999999999999999999
Q ss_pred HHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 041277 759 MLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDR-TALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVII 837 (1133)
Q Consensus 759 l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~~~ 837 (1133)
+|....++|..- +..|+=..-+ +|.++++++++.. +..++..-.+.+ -+.++|.++++++++.++...+++.
T Consensus 102 v~~a~~~~~l~~-----~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~-yl~v~fl~Hp~lG~~a~~ga~iLv~ 174 (580)
T COG4618 102 VFAASFSAPLLR-----RGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPL-YLAVIFLFHPWLGLIALAGAIILVV 174 (580)
T ss_pred HHHHHHhhHHhh-----cCCCccccch-hhHHHHHHHHcCCCcchhcCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877663 3445444444 6999999998774 333444333333 3445677899999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 838 CFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLAS 917 (1133)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (1133)
+.++..+..++..++..+.....+.+...+..+.++|++.|+.....++|.+....+.....+..-..+.+.+++..+-.
T Consensus 175 la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm 254 (580)
T COG4618 175 LALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRM 254 (580)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 88888888888777888888888999999999999999999999999999999999988888888888888888888889
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 041277 918 CTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPER 997 (1133)
Q Consensus 918 ~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 997 (1133)
.....++.+|+||+..|++|.|.+++....+.....|+..+...|..+..+..+..|+.+++...|... +..+.|.
T Consensus 255 ~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~----~~m~LP~ 330 (580)
T COG4618 255 ALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA----ERMPLPA 330 (580)
T ss_pred HHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc----CCCCCCC
Confidence 999999999999999999999999999888889999999999999999999999999999998665432 1233345
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHh
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
.+|.+..++|++.=|+. +.|+|+|+||+++|||-+|||||||||||||+++|.|.+.|.+|.|++||-|+++.+.++|=
T Consensus 331 P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG 409 (580)
T COG4618 331 PQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409 (580)
T ss_pred CCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhc
Confidence 57999999999976643 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1078 RHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++|||.|||..||+|||+|||+=..+ +.++|.|.+|++.|+.||.|.+||+||||
T Consensus 410 ~hiGYLPQdVeLF~GTIaeNIaRf~~-~~d~~kIieAA~lAgvHelIl~lP~GYdT 464 (580)
T COG4618 410 RHIGYLPQDVELFDGTIAENIARFGE-EADPEKVIEAARLAGVHELILRLPQGYDT 464 (580)
T ss_pred cccCcCcccceecCCcHHHHHHhccc-cCCHHHHHHHHHHcChHHHHHhCcCCccC
Confidence 99999999999999999999953323 57888999999999999999999999998
No 100
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.3e-46 Score=456.29 Aligned_cols=208 Identities=26% Similarity=0.396 Sum_probs=167.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4889999999972 23589999999999999999999999999999999999999999999975 2369
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCC------------------CC--------HHHHHHHHHHhchH-------HHHHhC
Q 041277 440 GLVSQEPALFAT-SIKENILFGKED------------------AS--------MEEVIEAAKASNAH-------NFIRQL 485 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~------------------~~--------~~~~~~~~~~~~~~-------~~i~~l 485 (1133)
|||+|+|.+++. |++||+.++... .. ..++.++++.++.+ +.++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999998864 999999875310 00 11233333333322 223332
Q ss_pred CCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-C
Q 041277 486 PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-A 564 (1133)
Q Consensus 486 ~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~ 564 (1133)
|++ .......+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++. +.|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 124456789999999999999999999999999999999999999999999876 3699999999999876 9
Q ss_pred CEEEEEeCCeEE-eecCcchhc
Q 041277 565 DVIAVVQDGQVM-ETGSHDELI 585 (1133)
Q Consensus 565 d~i~~l~~G~i~-~~g~~~~l~ 585 (1133)
|+|++|++|+++ ..|++++..
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHH
Confidence 999999999976 567666554
No 101
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-44 Score=384.41 Aligned_cols=469 Identities=21% Similarity=0.257 Sum_probs=361.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHH
Q 041277 87 LYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMN 166 (1133)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~ 166 (1133)
.++.++..+.+.+........++++..++|.++.++++..|+.-+++ . ++++++.++++|+..|. +-...++.+.++
T Consensus 55 ~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-~-~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa 131 (546)
T COG4615 55 LGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-L-GSARLLAGLTSDVRNIS-FAFSRLPELVQA 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-h-cccchhhhhccccccee-ehHhhhHHHHHH
Confidence 33344445566677777888899999999999999999999999996 7 99999999999999998 444567888999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHH--HH
Q 041277 167 ASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESK--TI 244 (1133)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~--~~ 244 (1133)
....+++.+.+.++++++.++.++++.+.++...+...+..+.....++..+++.+..+-.+.|.+..+....-.+ ..
T Consensus 132 ~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~ 211 (546)
T COG4615 132 IILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHN 211 (546)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHh
Confidence 9999999999999999999999988888888888888888888899999999999999999999999988643322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 245 NEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKY 323 (1133)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1133)
+.|....++.++.............. .+++.+....+++|+.... +--+.....++.+.+++...|+.++...++.
T Consensus 212 ~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgilP~ 288 (546)
T COG4615 212 NLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILPT 288 (546)
T ss_pred hhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhhhH
Confidence 33333333333322222111111111 3344444444555554322 1122233444555666777899999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHH
Q 041277 324 FSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKS 403 (1133)
Q Consensus 324 ~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKS 403 (1133)
+..|.+|++||.++-..++..+ . ......++ -..|+++||.|+|+... .-+..||++|++||++-|+|.||||||
T Consensus 289 l~~AqvA~~kiakle~~~~~a~-~-~~~q~~p~-~~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NGsGKS 363 (546)
T COG4615 289 LLTAQVAFNKIAKLELAPYKAD-F-PRPQAFPD-WKTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNGSGKS 363 (546)
T ss_pred HHHHHHHHHHHHHhhcCCcccc-C-CCCCcCCc-ccceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCCCcHH
Confidence 9999999999998755332221 1 11112222 34699999999998542 458899999999999999999999999
Q ss_pred HHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCC-CCHHHHHHHHHHhchHHHH
Q 041277 404 TVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKED-ASMEEVIEAAKASNAHNFI 482 (1133)
Q Consensus 404 Tll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~~~~~~i 482 (1133)
|++++|.|+|.|++|+|++||.+++.-+++++|+-++-|+-|-+||+.++ |.+. ++.+.+...++...+....
T Consensus 364 T~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt 437 (546)
T COG4615 364 TLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT 437 (546)
T ss_pred HHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999998765 3333 5666666665555443322
Q ss_pred HhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcch
Q 041277 483 RQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLST 560 (1133)
Q Consensus 483 ~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~ 560 (1133)
++.+|--+ ...||-|||+|+|+--|++-+.||+++||=-+--||.-++.+.+.+.... .|||++.||||-..
T Consensus 438 -sl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y 511 (546)
T COG4615 438 -SLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY 511 (546)
T ss_pred -cccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchh
Confidence 22222111 24799999999999999999999999999999999999998888776543 59999999999999
Q ss_pred hhcCCEEEEEeCCeEEee
Q 041277 561 IRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 561 ~~~~d~i~~l~~G~i~~~ 578 (1133)
...|||++.|++|+++|.
T Consensus 512 F~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 512 FIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhhHHHHHHHhcCceeec
Confidence 999999999999999875
No 102
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-47 Score=387.34 Aligned_cols=225 Identities=33% Similarity=0.550 Sum_probs=195.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HH
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WL 435 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~ 435 (1133)
..|++++|+++|+++ .|++|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|+|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~~---~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCCE---EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 469999999999754 499999999999999999999999999999999999999999999999999988764 56
Q ss_pred hhhceEEecCCCCccc-cHHHHHhcCCCC---CCHHH----HHHHHHHhchHHH-HHhCCCcccccccCCCCCCChHHHH
Q 041277 436 RSQMGLVSQEPALFAT-SIKENILFGKED---ASMEE----VIEAAKASNAHNF-IRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~-ti~eni~~~~~~---~~~~~----~~~~~~~~~~~~~-i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
|+++|+++|...||+. ||+||+.|...+ ..++. +...++.+|+... .+.+| .+||||+++
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 8999999999999976 999999996432 22333 3344566676665 55555 589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|+|||||++.||+|+++|||||+|||.+...+.+.|+++.+ +.|+++|||+++++.. |||++++.||+|+.+|+++|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988754 8999999999999876 89999999999999999999
Q ss_pred hccccchhhHHHHH
Q 041277 584 LIQAESGLYTSLVR 597 (1133)
Q Consensus 584 l~~~~~~~~~~~~~ 597 (1133)
+.+..+...++++.
T Consensus 233 l~~sd~P~v~qf~~ 246 (263)
T COG1127 233 LLASDDPWVRQFFN 246 (263)
T ss_pred HHhCCCHHHHHHhc
Confidence 99855555555443
No 103
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.5e-47 Score=402.97 Aligned_cols=213 Identities=33% Similarity=0.533 Sum_probs=192.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++|+|+++ ++|+|+||++++||+++|+||||||||||+++|+|+.+|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~~---~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGGK---PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECCe---eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 37899999999844 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCC-ccccHHHHHhcCCCC----------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 440 GLVSQEPAL-FATSIKENILFGKED----------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 440 ~~v~Q~~~l-~~~ti~eni~~~~~~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
|||||++.. |.-||+|-+.+|+.. .+.+.+.++++..++.++.++. -.+||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHH
Confidence 999999754 566999999998631 1233577889999988876653 247999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchh-hcCCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
.|||||+++|+||+||||||+||..++.++++.++++. +|+|+|+|.|+++.+ +.||++++|++|+++.+|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999875 489999999999876 569999999999999999999998
Q ss_pred c
Q 041277 586 Q 586 (1133)
Q Consensus 586 ~ 586 (1133)
.
T Consensus 228 T 228 (258)
T COG1120 228 T 228 (258)
T ss_pred C
Confidence 7
No 104
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-47 Score=425.80 Aligned_cols=222 Identities=29% Similarity=0.444 Sum_probs=194.2
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--C
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--L 430 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~ 430 (1133)
.+.|+++|++++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 78 ~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4679999999999643 3469999999999999999999999999999999999996 579999999999974 4
Q ss_pred CHHHHhhhceEEecCCCCccccHHHHHhcCCC--CCCHHH-----HHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 431 QLKWLRSQMGLVSQEPALFATSIKENILFGKE--DASMEE-----VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 431 ~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~~~~~-----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
+...+|+.++||||+|++|++|++|||.|+.. ..++++ +.++++.+++ ++++++.++++|.+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCHH
Confidence 45678899999999999999999999998642 123333 3344444443 445567889999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
||||++||||++++|+|||||||||+||+++.+.+++.|+++.+++|+|+|||+++++.. ||||++|++|+|++.|+++
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988888999999999999987 9999999999999999999
Q ss_pred hhccc
Q 041277 583 ELIQA 587 (1133)
Q Consensus 583 ~l~~~ 587 (1133)
++...
T Consensus 310 ~l~~~ 314 (329)
T PRK14257 310 TIFIH 314 (329)
T ss_pred HHhcC
Confidence 99763
No 105
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.2e-47 Score=367.95 Aligned_cols=208 Identities=31% Similarity=0.529 Sum_probs=188.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 437 (1133)
|+|+||++.|++. +++|+|+||+|++||++-++||||||||||+++|++...|+.|+|.++|+|+..+..+ .+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999865 4699999999999999999999999999999999999999999999999999887644 5899
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCC------CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKE------DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+||+|+||..|... ||+||++|... ..-.+++.++++.+++.+-...+|. +||||||||++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 99999999988765 99999998643 1224678899999999999999984 899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
|||++.+|++||.||||.+|||+....|++.+.+.. .|.||++.||+.+.+.. --|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999999874 59999999999999987 579999999999876543
No 106
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=412.47 Aligned_cols=216 Identities=35% Similarity=0.549 Sum_probs=196.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++||+++|++.. +++|+||+|++||+++|+|||||||||+|++|+|+.+|++|+|.|+|.+++++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~~---~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCce---eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 589999999997532 899999999999999999999999999999999999999999999999999998875 689
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCC------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDA------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|+|||+..||+- ||+|||.||.... .++++.++++..++.+.+++.| .+|||||||||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999965 9999999986532 2567889999999999999888 489999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+++|+++|||||+|+||++.+..+...|+++.+ +.|+|.||||...+.. +|||.||++|+|.+.|++.|+.+++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999998888653 7899999999987765 99999999999999999999986544
Q ss_pred hh
Q 041277 590 GL 591 (1133)
Q Consensus 590 ~~ 591 (1133)
..
T Consensus 227 n~ 228 (338)
T COG3839 227 NL 228 (338)
T ss_pred ch
Confidence 33
No 107
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=388.24 Aligned_cols=195 Identities=31% Similarity=0.503 Sum_probs=174.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.+++++|+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4789999999985 3599999999999999999999999999999999999999999999999988443 2479
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCC------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDA------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
+||+|++.||+- ||+||+.++.+.. ..+.+.+.++.+++.+|-++.|. +||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHH
Confidence 999999999986 9999999986532 23457788888999888888884 89999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCC
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDG 573 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G 573 (1133)
||+.+|++||||||++|||+.|+..+++.+.++. .++|+++|||+++.+-. +|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999998864 47999999999998765 9999999994
No 108
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=6e-46 Score=404.97 Aligned_cols=235 Identities=51% Similarity=0.843 Sum_probs=214.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 245899999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++++|+.|++||+.++.+....+++.++++..++.++++.+|.|+++.....+.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999987554456667777888889999999999999999999999999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHH
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 597 (1133)
+||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++++ ..+.|+.+++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~~~~~~ 235 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAYLYQ 235 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh-ccChHHHHHh
Confidence 999999999999999999999998877899999999999997899999999999999999999987 4677777653
No 109
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3e-46 Score=359.57 Aligned_cols=209 Identities=33% Similarity=0.561 Sum_probs=188.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|.+++|.|+|+..+ -.++++|++||++||+||||||||||+++|+||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56789999997532 368899999999999999999999999999999999999999999999877664 35699
Q ss_pred EEecCCCCccc-cHHHHHhcCCCC------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKED------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
+++||..||.- ||.+||.+|... ...+++..++..+|+.++.+++|. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999965 999999998641 235678899999999999999995 899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
|+++-||++||||+|+|||.-+.++...+.++. ++.|++||||+++.+.. +|+++++++|||.++|+.+++...
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999999888764 58899999999999876 999999999999999999998763
No 110
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-46 Score=377.38 Aligned_cols=213 Identities=35% Similarity=0.559 Sum_probs=188.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC---HHHHh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ---LKWLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~---~~~~r 436 (1133)
.|+++||+..||+. +.+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++..++ .+.+|
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 48999999999853 46999999999999999999999999999999999999999999999999998887 45677
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCCCC--------------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKEDA--------------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
++||+++|++.|.+. ||.+|++.|+-.. ......++++.+++.+.... +..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCC
Confidence 899999999999876 9999999875321 23345667777777665433 346899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEee
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMET 578 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 578 (1133)
|||+|||+|||||+++|+|+|.|||+|+|||.+.+.+++.|++.. .|.|+|+.-|+++.++. ||||+-|++|+|+.+
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999864 58999999999999875 999999999999999
Q ss_pred cCcchhc
Q 041277 579 GSHDELI 585 (1133)
Q Consensus 579 g~~~~l~ 585 (1133)
|+.+|+-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999964
No 111
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1e-45 Score=382.93 Aligned_cols=205 Identities=36% Similarity=0.520 Sum_probs=175.0
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---H-
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---L- 435 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~- 435 (1133)
++++||++.|.... ...+|+++||+|++||+++|+|||||||||||++|.|+..|++|+|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 246899999999999999999999999999999999999999999999999999887543 3
Q ss_pred hhhceEEecCCCCccc-cHHHHHhcC----CCCC--CHHHHHHHHHHhchHHHHH-hCCCcccccccCCCCCCChHHHHH
Q 041277 436 RSQMGLVSQEPALFAT-SIKENILFG----KEDA--SMEEVIEAAKASNAHNFIR-QLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~-ti~eni~~~----~~~~--~~~~~~~~~~~~~~~~~i~-~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
|++||||+|+..|++. |++|||.++ .... ..+...+.++..++.+... +.| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 4679999999999876 999999953 2111 2334555556656655444 334 5899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|||||||+.+|+|++.||||++||.++.+.|.+.+.+.. .|+|+|+|||+......|||++.|+||++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999999874 489999999999999999999999999954
No 112
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-46 Score=414.60 Aligned_cols=218 Identities=33% Similarity=0.546 Sum_probs=195.8
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..++++||+++|++ ..+++|+||+|++||+++++|||||||||+|++|+||..|++|+|.++|+++.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 35899999999983 3599999999999999999999999999999999999999999999999999998876 468
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCCC-C--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 439 MGLVSQEPALFA-TSIKENILFGKE-D--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 439 i~~v~Q~~~l~~-~ti~eni~~~~~-~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
||+|||+..||+ .||+|||.||.. . .. .+++.++++.+++.++-.+.| .+|||||||||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHH
Confidence 999999999996 599999999965 1 12 247888999999999888877 4899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhccc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
||||+.+|++||||||+||||.+-+..++..++++. .|.|.|+|||+-+... .+|||.||++|+|...|+|+|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999988764 3899999999998765 5999999999999999999999875
Q ss_pred cchhh
Q 041277 588 ESGLY 592 (1133)
Q Consensus 588 ~~~~~ 592 (1133)
+...|
T Consensus 228 P~~~f 232 (352)
T COG3842 228 PATRF 232 (352)
T ss_pred cchHH
Confidence 54444
No 113
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.6e-45 Score=401.17 Aligned_cols=240 Identities=33% Similarity=0.540 Sum_probs=218.4
Q ss_pred ccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHh
Q 041277 357 VLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 357 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r 436 (1133)
..+.|+++|++++|++. +..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...++
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 45789999999999753 24589999999999999999999999999999999999999999999999999888888889
Q ss_pred hhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 437 SQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+.++|++|+|.+|++|++||+..... ...+++.++.+..++.++++.+|.|+++.+++.+.+||||||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999976432 24556777888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHH
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 596 (1133)
+|+++||||||++||+++++.+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+..++.|++++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999999887778999999999999988999999999999999999999875566777776
Q ss_pred Hh
Q 041277 597 RL 598 (1133)
Q Consensus 597 ~~ 598 (1133)
..
T Consensus 254 ~~ 255 (257)
T cd03288 254 RT 255 (257)
T ss_pred hc
Confidence 53
No 114
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-45 Score=374.74 Aligned_cols=226 Identities=32% Similarity=0.469 Sum_probs=190.5
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC-HHHHhh
Q 041277 360 EVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ-LKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~-~~~~r~ 437 (1133)
.++++|+++.|+... ..++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.++|.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999997542 124899999999999999999999999999999999999999999999998776543 346778
Q ss_pred hceEEecCCCC--cc-ccHHHHHhcCCC----CCCHHHHHHHHHHhchHH-HHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 438 QMGLVSQEPAL--FA-TSIKENILFGKE----DASMEEVIEAAKASNAHN-FIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 438 ~i~~v~Q~~~l--~~-~ti~eni~~~~~----~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
.|.+|||||.- -+ .||++-|.=+.. +...+++.++++.+++.+ ++.+.| .+||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 89999999963 22 377776653221 234556888888888754 566666 489999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||..+|++||||||||+||+..+..|.+.+.++.+ +-|.|+|||+++.+.+ ||||+||++|+++|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999999999999999998765 5699999999999988 99999999999999999999987
Q ss_pred ccchhhHHHH
Q 041277 587 AESGLYTSLV 596 (1133)
Q Consensus 587 ~~~~~~~~~~ 596 (1133)
.....|.+..
T Consensus 232 ~~~h~ytr~L 241 (252)
T COG1124 232 HPSHPYTREL 241 (252)
T ss_pred CCccHHHHHH
Confidence 5456666544
No 115
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=436.54 Aligned_cols=204 Identities=27% Similarity=0.402 Sum_probs=154.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ .+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~~---~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGVR---VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 6899999999753 49999999999999999999999999999999999999999999998842 478
Q ss_pred EEecCCCCccccHHHHHhcCCCCC---C-----------HHHHHHHHH----------HhchHHHHHhCCCccc-ccccC
Q 041277 441 LVSQEPALFATSIKENILFGKEDA---S-----------MEEVIEAAK----------ASNAHNFIRQLPQQYD-TQVGE 495 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~---~-----------~~~~~~~~~----------~~~~~~~i~~l~~g~~-t~~~~ 495 (1133)
|++|++..+..|+.+++.-+.... + ...+..... ...+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 888875444456555543211000 0 000000000 01122233333 232 12344
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
...+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+...+.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 55689999999999999999999999999999999999999999998775 5799999999999876 99999999999
Q ss_pred EEe-ecCcc
Q 041277 575 VME-TGSHD 582 (1133)
Q Consensus 575 i~~-~g~~~ 582 (1133)
+.. .|+++
T Consensus 224 i~~~~g~~~ 232 (638)
T PRK10636 224 LFEYTGNYS 232 (638)
T ss_pred EEEecCCHH
Confidence 864 44443
No 116
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-45 Score=383.14 Aligned_cols=209 Identities=27% Similarity=0.514 Sum_probs=184.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|+++ ++|+||||++++|++++|+||||||||||+|+|+|+.+|.+|+|.+.|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999753 39999999999999999999999999999999999999999999999988765432 4579
Q ss_pred eEEecCC---CCccccHHHHHhcCCCCC----------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 440 GLVSQEP---ALFATSIKENILFGKEDA----------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 440 ~~v~Q~~---~l~~~ti~eni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
|||||.. |-|+.||+|-+.+|.... +.+++.++++.+++.++.++- + .+|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~-------i----~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQ-------I----GELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCc-------c----cccCcHHHH
Confidence 9999965 568899999999984321 247899999999998876542 2 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|+.|||||+++|++|+|||||+++|+.++..|.+.|+++. +|+||++||||++.+.. +|+|+.| |++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 9999999999999999999999999999999999999886 49999999999999865 9999999 5678899999999
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
.+
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 86
No 117
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-44 Score=393.84 Aligned_cols=234 Identities=55% Similarity=0.854 Sum_probs=212.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 34899999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++.+|+.|++||+.++.+..+.+++.++++..++.+.+..+|.|+++.+..++.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655566677777888899999999999999999999999999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHH
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 597 (1133)
+||||||++||+++.+.+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+.+++.. ....|+..+.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~-~~~~~~~~~~ 234 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYAEMWK 234 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh-cccHHHHHHh
Confidence 999999999999999999999988766899999999999998899999999999999999988876 4555555443
No 118
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6.1e-45 Score=411.25 Aligned_cols=225 Identities=28% Similarity=0.484 Sum_probs=191.1
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---Hh
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---LR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~r 436 (1133)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 246999999999999999999999999999999999999999999999999998877554 47
Q ss_pred hhceEEecCCCCcc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 437 SQMGLVSQEPALFA-TSIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~-~ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
++|||+||++.+|+ .|++||+.++.. ..+ .+++.++++..++.+..++. +.+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-----------~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 78999999999996 699999998532 122 23455666666666555444 3589999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 8999999999999976 99999999999999999999976
Q ss_pred ccch-hhHHHH
Q 041277 587 AESG-LYTSLV 596 (1133)
Q Consensus 587 ~~~~-~~~~~~ 596 (1133)
.+.. .++.+.
T Consensus 231 ~p~~~~~~~~~ 241 (343)
T TIGR02314 231 HPKTPLAQKFI 241 (343)
T ss_pred CCCcHHHHHHH
Confidence 4333 334444
No 119
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-44 Score=393.42 Aligned_cols=225 Identities=57% Similarity=0.898 Sum_probs=207.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999753 235899999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++.+|+.|++||+.++.+....+++.+.++..++.++++.+|.|+++..+..+.+||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655556667777888889999999999999999999999999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH
Confidence 999999999999999999999998877899999999999988899999999999999999988875
No 120
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-44 Score=391.49 Aligned_cols=226 Identities=52% Similarity=0.870 Sum_probs=208.8
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.|+++|++++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 358999999999742 248999999999999999999999999999999999999999999999999988877788889
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
++|++|++.+|+.|++||+.++.+....+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876655567777888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999998877899999999999988899999999999999998877754
No 121
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-45 Score=386.88 Aligned_cols=214 Identities=38% Similarity=0.647 Sum_probs=194.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC-CCCHHHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID-KLQLKWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~-~~~~~~~r~~ 438 (1133)
.++++|++|+|+++ .++|+|+||+|++||.++|+||||||||||++++.|+++|++|+|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999865 46999999999999999999999999999999999999999999999999988 4778899999
Q ss_pred ceEEecCC--CCccccHHHHHhcCCCCC--C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 439 MGLVSQEP--ALFATSIKENILFGKEDA--S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 439 i~~v~Q~~--~l~~~ti~eni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+|||+|+| .+|..||.|.++||..+. + ++++.++++.+++.++.++.| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 789999999999986532 2 245677888888888766655 5899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|.+|+.+|++||||||||+||+...+.+.+.++++.+ |+|+|++||+++.+.. ||++++|++|+++.+|+++++.+
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 9999999999999999999999999999999999863 5899999999999877 99999999999999999988876
No 122
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.1e-44 Score=393.18 Aligned_cols=226 Identities=69% Similarity=1.058 Sum_probs=206.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++..+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997532346899999999999999999999999999999999999999999999999988777777778899
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999987655555666777777888899999999999999999999999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999999988767899999999999988899999999999999999888865
No 123
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.3e-44 Score=386.19 Aligned_cols=220 Identities=37% Similarity=0.601 Sum_probs=204.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.++++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999743 2459999999999999999999999999999999999999999999999999988888888899
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
++|++|++.+++.|++||+.+... ...+++.++++..++.+++.++|.|+++..++.+.+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986543 4567788889999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecC
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 580 (1133)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877899999999999998899999999999998875
No 124
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.9e-43 Score=433.44 Aligned_cols=204 Identities=27% Similarity=0.387 Sum_probs=154.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 4 l~i~~ls~~~~~~---~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFSDA---PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEeeEEEEeCCc---eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 7899999999743 49999999999999999999999999999999999999999999998731 367
Q ss_pred EEecCCCC-ccccHHHHHhcCCCC------------------CCHHHHHHHHH-------------HhchHHHHHhCCCc
Q 041277 441 LVSQEPAL-FATSIKENILFGKED------------------ASMEEVIEAAK-------------ASNAHNFIRQLPQQ 488 (1133)
Q Consensus 441 ~v~Q~~~l-~~~ti~eni~~~~~~------------------~~~~~~~~~~~-------------~~~~~~~i~~l~~g 488 (1133)
+++|++.. ..+++.+++..+... ...+.+..... ...+.+.++.+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 78876532 224666654322100 00000000000 01122333333 2
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEE
Q 041277 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVI 567 (1133)
Q Consensus 489 ~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i 567 (1133)
+. ......+||||||||++|||||+.+|++|||||||++||+++...+.+.|+++ +.|+|+|||+...+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 21 13455689999999999999999999999999999999999999999999877 3599999999999876 9999
Q ss_pred EEEeCCeEEe-ecCcchh
Q 041277 568 AVVQDGQVME-TGSHDEL 584 (1133)
Q Consensus 568 ~~l~~G~i~~-~g~~~~l 584 (1133)
++|++|+++. .|++++.
T Consensus 224 ~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EEEECCEEEEecCCHHHH
Confidence 9999999974 3555444
No 125
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-45 Score=379.98 Aligned_cols=214 Identities=31% Similarity=0.509 Sum_probs=186.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe---ecCCCCHHHHh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV---SIDKLQLKWLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~---~~~~~~~~~~r 436 (1133)
.|+++|+++.|+.. .+++|||++|+.||.+|+.|||||||||||++|+|+..|++|.|.+||. |.++.. .-.
T Consensus 2 ~i~i~~~~~~~~~~---~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGAF---GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhcccc---cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 47889999999754 4899999999999999999999999999999999999999999999999 555533 234
Q ss_pred hhceEEecCCCCcc-ccHHHHHhcCCC--------CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 437 SQMGLVSQEPALFA-TSIKENILFGKE--------DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~-~ti~eni~~~~~--------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
++||+|+|+..||. .||.+||+||.+ .....++.+.++.+++.++-++.| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 67999999999985 699999999962 123456667777888777777766 5899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|||||||..+|++||||||++|||++.++.+..-|++.. -|.|+++||||.+.+.. ||||++|++|+|...|+++|+
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999999998864 38999999999998755 999999999999999999999
Q ss_pred ccccc
Q 041277 585 IQAES 589 (1133)
Q Consensus 585 ~~~~~ 589 (1133)
...++
T Consensus 226 ~~~P~ 230 (345)
T COG1118 226 YDHPA 230 (345)
T ss_pred hcCCC
Confidence 76544
No 126
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.2e-43 Score=382.53 Aligned_cols=219 Identities=41% Similarity=0.682 Sum_probs=200.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|++. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999742 24589999999999999999999999999999999999999999999999998877777778899
Q ss_pred eEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 440 GLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 440 ~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
+|++|++.+|..|++||+.++.+....+++.+.++..++.+.++.+|.|++|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998899999988754445567778888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
++||||||++||+.+...+.+.|++..+++|+|++||+++.++.||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999886668999999999988779999999999998754
No 127
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-43 Score=386.62 Aligned_cols=212 Identities=33% Similarity=0.528 Sum_probs=181.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH---HHHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL---KWLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 437 (1133)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999974 349999999999999999999999999999999999999999999999999887654 56788
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCC---CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKE---DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
.|+||+|++.+|+. |++||+.++.. ..+.+ ++.++++..++.++. .....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 89999999999986 99999987532 12222 233444444443332 3344589999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999999999999999999999999875 37999999999998876 99999999999999999998875
No 128
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-43 Score=402.28 Aligned_cols=218 Identities=27% Similarity=0.466 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3889999999942 23589999999999999999999999999999999999999999999999999877654 4689
Q ss_pred eEEecCCCCcc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFA-TSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~-~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||+|++.+|+ .||+|||.|+... .+ .+++.++++..++.++.++.| .+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 5999999987431 12 244667777778877766665 489999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+++|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999988753 7999999999998765 99999999999999999999976444
Q ss_pred hhh
Q 041277 590 GLY 592 (1133)
Q Consensus 590 ~~~ 592 (1133)
..|
T Consensus 228 ~~~ 230 (356)
T PRK11650 228 STF 230 (356)
T ss_pred cHH
Confidence 333
No 129
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-43 Score=394.16 Aligned_cols=221 Identities=27% Similarity=0.447 Sum_probs=186.4
Q ss_pred ccEEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC------
Q 041277 359 GEVEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL------ 430 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~------ 430 (1133)
..|+++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3589999999997421 23599999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhhhceEEecCC--CCccccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCccc-ccccC
Q 041277 431 ----------QLKWLRSQMGLVSQEP--ALFATSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGE 495 (1133)
Q Consensus 431 ----------~~~~~r~~i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~ 495 (1133)
....+|++|+||+|+| .+|+.|++|||.++.. ..+.++..+ . ..++++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcC
Confidence 3456788999999998 6899999999998742 223332221 1 12344444 343 34567
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEEeCC
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVVQDG 573 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G 573 (1133)
.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|.++. +|+|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 788999999999999999999999999999999999999999999998764 5899999999999875 59999999999
Q ss_pred eEEeecCcchhcc
Q 041277 574 QVMETGSHDELIQ 586 (1133)
Q Consensus 574 ~i~~~g~~~~l~~ 586 (1133)
++++.|+++++..
T Consensus 253 ~i~~~g~~~~~~~ 265 (320)
T PRK13631 253 KILKTGTPYEIFT 265 (320)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999999876
No 130
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-43 Score=401.24 Aligned_cols=215 Identities=32% Similarity=0.504 Sum_probs=188.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999974 3489999999999999999999999999999999999999999999999999876643 5789
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||+|++.+|+. |++|||.|+.. ..+ .+++.++++..++.++.++.| .+||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 99999998743 112 345666777777766555444 589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998753 8999999999998865 99999999999999999999976444
Q ss_pred h
Q 041277 590 G 590 (1133)
Q Consensus 590 ~ 590 (1133)
.
T Consensus 230 ~ 230 (351)
T PRK11432 230 S 230 (351)
T ss_pred c
Confidence 3
No 131
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=4.1e-43 Score=379.81 Aligned_cols=219 Identities=53% Similarity=0.862 Sum_probs=197.2
Q ss_pred ccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHh
Q 041277 357 VLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 357 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r 436 (1133)
..+.++++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999753223589999999999999999999999999999999999999999999999998877777778
Q ss_pred hhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 437 SQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+.++|++|++.+|+.|++||+.++.......++.+..+..++.++++.+|.|+++.+.+.+.+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999998755444455555556667888999999899999999999999999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
+|+++||||||++||+++.+.+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988777999999999999988999999999974
No 132
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.7e-43 Score=381.50 Aligned_cols=212 Identities=35% Similarity=0.564 Sum_probs=181.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc-----CCCccEEEECCeecCCCC--HH
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSIDKLQ--LK 433 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~-----~~~~G~i~~~g~~~~~~~--~~ 433 (1133)
|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.+.+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 4789999999743 4899999999999999999999999999999999999 999999999999988766 55
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCCCC---C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKEDA---S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
.++++++|++|++.+|..|++||+.++.... . .+++.++++..++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 6788999999999999779999998753211 1 2344555666665544333221 3689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|++||||++++|+++||||||++||+.+++.+.+.|++..+.+|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999987655899999999998865 999999999999999988764
No 133
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.2e-42 Score=423.80 Aligned_cols=218 Identities=22% Similarity=0.275 Sum_probs=158.9
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc---CCCccEEEECCeecCC--CCH-
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY---APLGGEIILDGVSIDK--LQL- 432 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~---~~~~G~i~~~g~~~~~--~~~- 432 (1133)
..|+++|++|+|+++ .+|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++++.. .+.
T Consensus 176 ~~I~i~nls~~y~~~---~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGGR---DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCCC---EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 359999999999743 4999999999999999999999999999999999864 5889999865554321 111
Q ss_pred -----------HHHhhhceEEecCCCCccccHHHHHhcCCC-CCCH----HHHHHHHHHhch----------HHHHHhCC
Q 041277 433 -----------KWLRSQMGLVSQEPALFATSIKENILFGKE-DASM----EEVIEAAKASNA----------HNFIRQLP 486 (1133)
Q Consensus 433 -----------~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~-~~~~----~~~~~~~~~~~~----------~~~i~~l~ 486 (1133)
..+++.+++++|+|.+...+..+|...... .... +++.++.+..++ ...+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 123456899999887654444444422110 0111 122222222211 1222222
Q ss_pred Cccc-ccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-C
Q 041277 487 QQYD-TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-A 564 (1133)
Q Consensus 487 ~g~~-t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~ 564 (1133)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||++..+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 221 1122334689999999999999999999999999999999999999999999876 6899999999999877 9
Q ss_pred CEEEEEeCCeEE-eecCcch
Q 041277 565 DVIAVVQDGQVM-ETGSHDE 583 (1133)
Q Consensus 565 d~i~~l~~G~i~-~~g~~~~ 583 (1133)
|+|++|++|++. ..|++++
T Consensus 409 d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred CEEEEEECCEEEEeCCCHHH
Confidence 999999999996 4555444
No 134
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=378.14 Aligned_cols=464 Identities=14% Similarity=0.147 Sum_probs=347.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHH------HHHHHhhHHHHHHHH
Q 041277 83 TVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEV------ITSVSNDSLVIQDAI 156 (1133)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l------~~r~~~D~~~i~~~~ 156 (1133)
...+..++.+..++...+.++......++..-|-+.+.++-+.....|+.. ..|.+ =.|+.+|+..+-+..
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~---~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA---QAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH---hcccccCCCChHHhHHHHHHHHHhhH
Confidence 334444555555666667777666666666666677777777766444432 33322 269999999888877
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 157 SEKLPNFVMNASLFFGCYLVAFLML---------------WRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAG 221 (1133)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (1133)
......++.+++.++...+++..++ ..+..++++.+++.-++..+++|.+.+..-+.++..+...
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 6666677777776666555554222 2233344445555556666788888888888888888888
Q ss_pred HHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Q 041277 222 TIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK----QGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQG 297 (1133)
Q Consensus 222 ~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~ 297 (1133)
..+.-.-.+...|-.|+.|+.+.++.++......+...+ ...+..+..+ ...++.++-+..++-....|.++.
T Consensus 246 ~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~g---y~~~s~v~P~li~ap~~f~g~i~~ 322 (604)
T COG4178 246 YSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLG---YGWLSVVLPILIAAPRYFSGQITF 322 (604)
T ss_pred HHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh---hhHHHHHHHHHhccHhhhcCcChH
Confidence 888889999999999999999998877666655443333 2222222222 222222233334555678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCCCCCcc--ccc---ccccccEEEEEEEEEc
Q 041277 298 GTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVP--KIDSDSMEG--EIL---ENVLGEVEFKCVQFAY 370 (1133)
Q Consensus 298 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~--~~~~~~~~~--~~~---~~~~~~i~~~~v~~~y 370 (1133)
|.++.....+......++.+...+..+++=++...|+.++.+.-. +.+...... ... ...+..|+++|++..-
T Consensus 323 G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~ 402 (604)
T COG4178 323 GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRT 402 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEEC
Confidence 999988888888888888999999999999999999999864321 111011000 000 1114679999999998
Q ss_pred CCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcc
Q 041277 371 PSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA 450 (1133)
Q Consensus 371 ~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~ 450 (1133)
|+.. ..+++.||++++||.+-|.||||||||||+++|+|+++--+|+|..-.. ..+-|+||.|++-.
T Consensus 403 p~~~--~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~ 469 (604)
T COG4178 403 PDGQ--TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQ 469 (604)
T ss_pred CCCC--eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCC
Confidence 8643 6899999999999999999999999999999999999999999876521 25899999999999
Q ss_pred ccHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc
Q 041277 451 TSIKENILFGKED--ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528 (1133)
Q Consensus 451 ~ti~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 528 (1133)
||.||-|+|+... .+++++.+++.++++.++++++.+-.+ -...||+|||||+++||.++++|++++|||+||
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATs 544 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS 544 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchh
Confidence 9999999998764 789999999999999999999754222 345799999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEE
Q 041277 529 ALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 529 ~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
|||++++..+.+.+++...+.|+|-|.||.......++.+-+
T Consensus 545 ALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 545 ALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLEL 586 (604)
T ss_pred ccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheee
Confidence 999999999999999988999999999998777666665444
No 135
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2e-43 Score=400.75 Aligned_cols=207 Identities=34% Similarity=0.522 Sum_probs=181.2
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH----hhhceEEecCCCCccc
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL----RSQMGLVSQEPALFAT 451 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~~ 451 (1133)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++ |++|+||+|++++|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 348999999999999999999999999999999999999999999999999999888777 7789999999999975
Q ss_pred -cHHHHHhcCCCC--C----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 041277 452 -SIKENILFGKED--A----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLD 524 (1133)
Q Consensus 452 -ti~eni~~~~~~--~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlD 524 (1133)
||+|||.++.+. . ..+++.++++.+++.+++.+.| .+||||||||++|||||+.+|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999986431 1 2345667777777766655544 589999999999999999999999999
Q ss_pred CcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhhH
Q 041277 525 EATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593 (1133)
Q Consensus 525 E~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 593 (1133)
||||+||+.+++.+++.+.++. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999998874 38999999999998754 999999999999999999999864434443
No 136
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.9e-43 Score=400.82 Aligned_cols=217 Identities=29% Similarity=0.460 Sum_probs=186.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 4 ~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGAF---TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCCe---EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 48999999999743 489999999999999999999999999999999999999999999999999876653 5689
Q ss_pred eEEecCCCCcc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFA-TSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~-~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||+|++.+|+ .|++||+.|+... .+ .+++.++++..++.++.+ ..+.+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHH
Confidence 99999999996 5999999987431 11 234555555555554444 344689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|+++|||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988753 8999999999998765 99999999999999999999987443
Q ss_pred hhh
Q 041277 590 GLY 592 (1133)
Q Consensus 590 ~~~ 592 (1133)
..|
T Consensus 228 ~~~ 230 (353)
T TIGR03265 228 TPF 230 (353)
T ss_pred CHH
Confidence 333
No 137
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-43 Score=389.06 Aligned_cols=216 Identities=32% Similarity=0.525 Sum_probs=188.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++||+++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743223589999999999999999999999999999999999999999999999999887777888899
Q ss_pred eEEecCCC--CccccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEPA--LFATSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~~--l~~~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
|||+|+|. ++..||+|||.++... .+ .+++.++++..++.++.++.| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999984 4567999999987421 22 234566777777766655544 58999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 999999999999999999999999999999998753 899999999999987799999999999999999988865
No 138
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-43 Score=368.80 Aligned_cols=225 Identities=33% Similarity=0.530 Sum_probs=197.8
Q ss_pred cEEEEEEEEEcCCCCC---------------------CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 360 EVEFKCVQFAYPSRPE---------------------SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~---------------------~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
.|+++||++-|+.++. ..-++|+||+|+.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4788888888865321 1247899999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHh----hhceEEecCCCCccc-cHHHHHhcCCCC------CCHHHHHHHHHHhchHHHHHhCCC
Q 041277 419 EIILDGVSIDKLQLKWLR----SQMGLVSQEPALFAT-SIKENILFGKED------ASMEEVIEAAKASNAHNFIRQLPQ 487 (1133)
Q Consensus 419 ~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~~l~~~-ti~eni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~ 487 (1133)
+|+++|.|+..++.++|| +++++|||+.-|++- ||.||..||.+- ...+...++++.+++++|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999987664 579999999999865 999999998651 234567788999999999888885
Q ss_pred cccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-cC
Q 041277 488 QYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIR-NA 564 (1133)
Q Consensus 488 g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~ 564 (1133)
+||||+||||.|||||..||+|||+|||+|||||--+..+|+-|.++. -+||+++|||+++..- -.
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 899999999999999999999999999999999999999999888764 3899999999999864 59
Q ss_pred CEEEEEeCCeEEeecCcchhccccchhhHHH
Q 041277 565 DVIAVVQDGQVMETGSHDELIQAESGLYTSL 595 (1133)
Q Consensus 565 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 595 (1133)
|||..|++|+|+..|||+|++.++...|-.-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~ 263 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRD 263 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHH
Confidence 9999999999999999999997666666543
No 139
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=9.8e-43 Score=398.07 Aligned_cols=218 Identities=33% Similarity=0.547 Sum_probs=190.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..++++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++
T Consensus 13 ~~L~l~~l~~~~~~~---~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 358999999999743 489999999999999999999999999999999999999999999999999876654 468
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
||||+|++.+|+. ||+|||.|+... .+ .+++.++++..++.++.++.| .+||||||||++||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLA 156 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIA 156 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999965 999999987431 12 235666777777777776665 48999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcccc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
|||+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999998753 8999999999998765 9999999999999999999998644
Q ss_pred chhh
Q 041277 589 SGLY 592 (1133)
Q Consensus 589 ~~~~ 592 (1133)
...|
T Consensus 237 ~~~~ 240 (375)
T PRK09452 237 KNLF 240 (375)
T ss_pred ccHH
Confidence 4333
No 140
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=377.76 Aligned_cols=223 Identities=32% Similarity=0.509 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFGK---EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 48899999999743 489999999999999999999999999999999999999999999999999877777788899
Q ss_pred eEEecCCCCccccHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 440 GLVSQEPALFATSIKENILFGKED--ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 440 ~~v~Q~~~l~~~ti~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
+|++|++.+|+.|++||+.++... ...+++.+.++..++.+ ........+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999989999999876321 11233444444444421 112334568999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhhHH
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYTS 594 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 594 (1133)
|+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|..
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 99999999999999999999999999874 38999999999999875 9999999999999999999987633334444
Q ss_pred H
Q 041277 595 L 595 (1133)
Q Consensus 595 ~ 595 (1133)
.
T Consensus 230 ~ 230 (241)
T PRK14250 230 L 230 (241)
T ss_pred H
Confidence 3
No 141
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=380.47 Aligned_cols=217 Identities=29% Similarity=0.473 Sum_probs=186.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC---CCccEEEECCeecCCCCHHHHh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA---PLGGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~---~~~G~i~~~g~~~~~~~~~~~r 436 (1133)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999974 348999999999999999999999999999999999985 6999999999999888777888
Q ss_pred hhceEEecCCCCccccHHHHHhcCCCC--------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 437 SQMGLVSQEPALFATSIKENILFGKED--------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~ti~eni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
+.++|+||++.+|+.|++||+.++... ...+++.++++..++.+++.. ...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 899999999999999999999875310 011234455555555433322 23456679999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+||||++++|+++||||||++||+.++..+.+.|.+..+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999988778999999999998865 99999999999999999999865
No 142
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=396.06 Aligned_cols=216 Identities=32% Similarity=0.532 Sum_probs=183.7
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---Hh
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---LR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~r 436 (1133)
|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999997311 246999999999999999999999999999999999999999999999999998876544 47
Q ss_pred hhceEEecCCCCcc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 437 SQMGLVSQEPALFA-TSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~-~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
++||||||++.+|. .|++||+.++.. ..+. +++.+.++..++.++. .....+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKA-----------DRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 78999999999986 599999987532 1222 2334444444444333 3345689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+++|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999874 38999999999999876 99999999999999999999976
Q ss_pred c
Q 041277 587 A 587 (1133)
Q Consensus 587 ~ 587 (1133)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 4
No 143
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=395.97 Aligned_cols=217 Identities=29% Similarity=0.487 Sum_probs=185.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+. .+++|
T Consensus 2 ~L~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGRT---QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCCe---EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 37899999999743 48999999999999999999999999999999999999999999999999977654 35689
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCC------CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKED------AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~------~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
+||+|++.+|+. |++||+.|+... .+ .+++.++++..++.++.++. ..+||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHH
Confidence 999999999975 999999987431 12 23455556666665544443 458999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+|||||+++|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998753 7899999999998765 9999999999999999999997
Q ss_pred cccchhh
Q 041277 586 QAESGLY 592 (1133)
Q Consensus 586 ~~~~~~~ 592 (1133)
..+...|
T Consensus 226 ~~p~~~~ 232 (353)
T PRK10851 226 REPATRF 232 (353)
T ss_pred hCccchH
Confidence 6443333
No 144
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=8.9e-43 Score=397.11 Aligned_cols=215 Identities=31% Similarity=0.499 Sum_probs=186.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc--cEEEECCeecCCCCHHHHh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG--GEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~--G~i~~~g~~~~~~~~~~~r 436 (1133)
+.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECCe---EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 579999999999743 48999999999999999999999999999999999999999 999999999976655 35
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
++||||+|++.+|+. ||+|||.|+.. ... .+++.++++..++.++.++.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 689999999999965 99999998642 112 234555666666655555544 589999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC---CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV---GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~---~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
|||||+.+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999988653 7899999999998765 9999999999999999999998
Q ss_pred cccc
Q 041277 586 QAES 589 (1133)
Q Consensus 586 ~~~~ 589 (1133)
..+.
T Consensus 228 ~~p~ 231 (362)
T TIGR03258 228 DAPA 231 (362)
T ss_pred hCcC
Confidence 6443
No 145
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.7e-42 Score=419.50 Aligned_cols=192 Identities=21% Similarity=0.298 Sum_probs=155.4
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEE-----------ECCeecCCCCH
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII-----------LDGVSIDKLQL 432 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~-----------~~g~~~~~~~~ 432 (1133)
++++++|+.+ ..+|++++ ++++||++||+||||||||||+++|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 3489999742 35899999 9999999999999999999999999999999999997 89988865432
Q ss_pred HH--Hhhh----ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 433 KW--LRSQ----MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 433 ~~--~r~~----i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
+. .+.+ ++|++|.|.+|.+|++||+... ...+++.++++..++.+.. .....+|||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~q 219 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---DERGKLDEVVERLGLENIL-----------DRDISELSGGELQ 219 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh---hHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHH
Confidence 11 1122 4455566777888999999742 1223455555555554332 2334589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeC
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQD 572 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~ 572 (1133)
|++|||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999987668999999999999876 999999975
No 146
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-42 Score=383.29 Aligned_cols=213 Identities=32% Similarity=0.561 Sum_probs=186.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-|+++|++++|+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+..+++++|
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 3499999999999999999999999999999999999999999999999999888878888899
Q ss_pred eEEecCC--CCccccHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEP--ALFATSIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~--~l~~~ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
|||+|+| .++..|++||+.++.. ..+ .+++.++++..++.++..+.| .+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 5778899999998632 112 234566667777766655554 48999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
|||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999998874 4899999999999985 49999999999999999987653
No 147
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.8e-42 Score=397.58 Aligned_cols=213 Identities=23% Similarity=0.451 Sum_probs=189.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4889999999974 3599999999999999999999999999999999999999999999999999998888899999
Q ss_pred eEEecCCCC-ccccHHHHHhcCCCC----------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 440 GLVSQEPAL-FATSIKENILFGKED----------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 440 ~~v~Q~~~l-~~~ti~eni~~~~~~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
|||+|++.+ ++.|++||+.++... ...+++.++++..++.++.++ ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 567999999887421 113346667777777655443 3458999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+|||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+.. |||+++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 58899999999999965 99999999999999999999886
No 148
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.8e-42 Score=378.14 Aligned_cols=217 Identities=31% Similarity=0.515 Sum_probs=183.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC-----ccEEEECCeecCCC--CHH
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-----GGEIILDGVSIDKL--QLK 433 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~-----~G~i~~~g~~~~~~--~~~ 433 (1133)
++++||+++|++. .+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECCe---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 6899999999743 4899999999999999999999999999999999999998 99999999998753 345
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCCC---CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKED---ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
..+++++|+||++.+|+.|++||+.++... ... +++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 667899999999999999999999875321 111 23444555555542221 2234455789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
|++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999998865 9999999999999999999886
Q ss_pred cc
Q 041277 586 QA 587 (1133)
Q Consensus 586 ~~ 587 (1133)
..
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 53
No 149
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-41 Score=385.82 Aligned_cols=208 Identities=32% Similarity=0.487 Sum_probs=177.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH-Hhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW-LRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 438 (1133)
-++++|++++|+.- ++|+|+||++.+||++|++|.||||||||+|.|+|.|+|++|+|.+||+...-.++.+ ....
T Consensus 8 ll~~~~i~K~FggV---~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGGV---KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCCc---eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 47899999999854 4999999999999999999999999999999999999999999999999998777654 4567
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCC------HHHHHHHHHHhchHHHHHhCC--CcccccccCCCCCCChHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDAS------MEEVIEAAKASNAHNFIRQLP--QQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~--~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
|+.|.||..|++. ||.|||.+|++... ..+..+.++. .+..+. ...++.++ +||+||||.|+
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~~~~~v~----~LsiaqrQ~Ve 155 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDIDPDTLVG----DLSIAQRQMVE 155 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCChhhhhh----hCCHHHHHHHH
Confidence 9999999999966 99999999876332 2343333322 233332 12455554 79999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
||||+..+++|+|||||||+|+....+.+.+.+++++ +|.++|+||||++.+.. ||||.||.||+.+..+
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~ 227 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTR 227 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeec
Confidence 9999999999999999999999999999999999876 69999999999999876 9999999999998654
No 150
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-42 Score=385.89 Aligned_cols=217 Identities=32% Similarity=0.522 Sum_probs=183.1
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC--HHHHh
Q 041277 361 VEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ--LKWLR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~--~~~~r 436 (1133)
|+++||+++|+... .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 135999999999999999999999999999999999999999999999999997654 35678
Q ss_pred hhceEEecCC--CCccccHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 437 SQMGLVSQEP--ALFATSIKENILFGKE--DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 ~~i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++||||||+| .+|+.|++||+.++.. ..+.+ ++.++++.+++. +.+.....+.+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 8999999998 5778899999998632 12332 234444444442 11234455678999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+|||||+.+|++|||||||++||+.++..+.+.|+++. .|+|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999875 3899999999999885 59999999999999999999886
Q ss_pred c
Q 041277 586 Q 586 (1133)
Q Consensus 586 ~ 586 (1133)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
No 151
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-42 Score=385.13 Aligned_cols=216 Identities=25% Similarity=0.489 Sum_probs=182.1
Q ss_pred EEEEEEEEEcCCCCC--CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC----CCHHH
Q 041277 361 VEFKCVQFAYPSRPE--SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK----LQLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~----~~~~~ 434 (1133)
|+++||+|+|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974321 258999999999999999999999999999999999999999999999999863 33556
Q ss_pred HhhhceEEecCC--CCccccHHHHHhcCCCC--CCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 435 LRSQMGLVSQEP--ALFATSIKENILFGKED--ASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 435 ~r~~i~~v~Q~~--~l~~~ti~eni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
+|+++|||+|+| .+|..|+.||+.|+... .+.+ ++.++++..++.+ ........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence 788999999998 78889999999987432 2222 2333444444421 1223445689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchh
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|++|||||+.+|++|||||||++||+.+++.+.+.++++. +|+|+|++||+++.+. .||+|++|++|+++++|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998875 5899999999999886 4999999999999999999998
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 232 ~~ 233 (288)
T PRK13643 232 FQ 233 (288)
T ss_pred Hc
Confidence 65
No 152
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-42 Score=375.95 Aligned_cols=210 Identities=31% Similarity=0.492 Sum_probs=178.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999974 349999999999999999999999999999999999999999999999999876543 256799
Q ss_pred EEecCCCCcc-ccHHHHHhcCCCCC------CH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 441 LVSQEPALFA-TSIKENILFGKEDA------SM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~~~------~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
|++|+|.+|. .|++||+.++.... .. +++.++++..++.+.. .....+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHH
Confidence 9999999986 59999998763211 11 2233444444444333 3344689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|++|||||||++||+++++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998743 7899999999998765 99999999999999999998865
No 153
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.5e-42 Score=372.69 Aligned_cols=203 Identities=31% Similarity=0.520 Sum_probs=173.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 437 (1133)
++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 23589999999999999999999999999999999999999999999999998766543 4678
Q ss_pred hceEEecCCCCcc-ccHHHHHhcCCC------CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFA-TSIKENILFGKE------DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~-~ti~eni~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+++|++|++.+|. .|++||+.++.. ....+++.++++..++.++..+.| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 8999999999886 499999987521 112345566667666665554443 5899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 48999999999999875 999999999975
No 154
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=7.1e-41 Score=371.94 Aligned_cols=208 Identities=28% Similarity=0.485 Sum_probs=175.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 438 (1133)
.++++++++.||+ ..+++||||+|++||+.||+|.||+|||||+++|.|+|+|++|+|++||++++--++ +..|..
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 5899999999984 358999999999999999999999999999999999999999999999999976554 567788
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCC-----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDA-----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
||+|.|++.|++. ||.|||.+|.+.. +..+..+ .+.+..+++ |++-...+....||-||||||.|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~-----~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA-----RIKELSERY--GLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHH-----HHHHHHHHh--CCCCCccceeecCCcchhHHHHHHH
Confidence 9999999999976 9999999997632 2222221 112222222 2333333445579999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEe
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
||+++|++||||||||-|-|...+.+.+.++++. +|+|||+|||++..+.. |||+-||.+|+++.
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 9999999999999999999999999999999875 69999999999999987 99999999999864
No 155
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2e-42 Score=377.20 Aligned_cols=221 Identities=25% Similarity=0.475 Sum_probs=183.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 439 (1133)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999974 348999999999999999999999999999999999999999999999999987776554 5679
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCCCHHHH-------HHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDASMEEV-------IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~-------~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+|+||++.+|.. |++||+.++........+ ........+++.++.+ |++........+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999886 999999876421110000 0000111223444444 445555666779999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999998875 68999999999999876 99999999999999999988764
No 156
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-42 Score=377.41 Aligned_cols=212 Identities=35% Similarity=0.571 Sum_probs=179.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC---HHHHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ---LKWLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~---~~~~r~ 437 (1133)
++++|++++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4689999999741 35999999999999999999999999999999999999999999999999998776 456778
Q ss_pred hceEEecCCCCcc-ccHHHHHhcCCCCC--------------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 438 QMGLVSQEPALFA-TSIKENILFGKEDA--------------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~-~ti~eni~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
.++|+||++.+|. .|++||+.++.... ..+++.++++..++ .......+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----------LDKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC-----------hhhhCCCcccCCH
Confidence 8999999998887 59999998753210 11223333333333 3334455679999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|||||++||||++.+|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999874 38999999999999884 9999999999999999
Q ss_pred Ccchhc
Q 041277 580 SHDELI 585 (1133)
Q Consensus 580 ~~~~l~ 585 (1133)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988863
No 157
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.8e-42 Score=376.73 Aligned_cols=212 Identities=33% Similarity=0.528 Sum_probs=179.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH---HHHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL---KWLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 437 (1133)
|+++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 679999999962 2349999999999999999999999999999999999999999999999999877653 34678
Q ss_pred hceEEecCCCCcc-ccHHHHHhcCCCCC--------------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 438 QMGLVSQEPALFA-TSIKENILFGKEDA--------------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~-~ti~eni~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
+++|+||++.+|. .|++||+.++.... ..+++.++++..++.+ .....+.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCH
Confidence 8999999999886 59999998753210 1122333444444433 33445578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999874 37999999999999865 9999999999999999
Q ss_pred Ccchhc
Q 041277 580 SHDELI 585 (1133)
Q Consensus 580 ~~~~l~ 585 (1133)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 998863
No 158
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-42 Score=381.28 Aligned_cols=215 Identities=33% Similarity=0.579 Sum_probs=188.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-++++||+++|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999642 23599999999999999999999999999999999999999999999999999888777788899
Q ss_pred eEEecCC--CCccccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEP--ALFATSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~--~l~~~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+|++|++ .+++.|++|||.++... .+ .+++.++++..++.+++...| .+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 45677999999886321 12 234566677777776666554 48999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999998753 799999999999988899999999999999999988875
No 159
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-42 Score=378.54 Aligned_cols=217 Identities=31% Similarity=0.520 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~~~ 432 (1133)
.|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGDF---QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECCe---eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 58999999999743 48999999999999999999999999999999999975 689999999999864 344
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKE--DA-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+|++++|++|++.+|+.|++||+.++.. .. . .+++.++++..++.+.+. +.....+.+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 567889999999999998999999987531 11 1 234455555555543322 223455678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999988
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
.+
T Consensus 236 ~~ 237 (253)
T PRK14242 236 FT 237 (253)
T ss_pred Hc
Confidence 75
No 160
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-42 Score=371.03 Aligned_cols=203 Identities=35% Similarity=0.555 Sum_probs=172.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 468999999974 348999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEecCCCCcc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFA-TSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|+||++.+|. .|++||+.++... .. .+++.++++..++.++..+ ...+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNR-----------YPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHHHHHH
Confidence 9999998886 5999999875321 11 1234455555555444433 345899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|+.+|+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999874 38999999999998865 9999999999998765
No 161
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-42 Score=376.30 Aligned_cols=223 Identities=30% Similarity=0.432 Sum_probs=186.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~--~~~ 432 (1133)
-++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTDF---KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCCc---eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 58999999999743 489999999999999999999999999999999999997 48999999998853 234
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC---CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED---AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+|++++|++|++.+|+.|++||+.++... .. .+++.++++.+++.+.+ ++.++ ..+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~----~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLN----TNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHh----CCcccCCHHHH
Confidence 5678889999999999989999999876321 11 23344555555543222 12233 35678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++|||||+++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred ccccchhh
Q 041277 585 IQAESGLY 592 (1133)
Q Consensus 585 ~~~~~~~~ 592 (1133)
.+++...|
T Consensus 237 ~~~~~~~~ 244 (254)
T PRK14273 237 FFNPKNTK 244 (254)
T ss_pred HhCCCChH
Confidence 75433333
No 162
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.4e-42 Score=371.13 Aligned_cols=211 Identities=29% Similarity=0.453 Sum_probs=178.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++||+++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 4789999999742 13599999999999999999999999999999999999999999999999998754 356678899
Q ss_pred EEecCCCCc-cccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALF-ATSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~-~~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.++ ..|++||+.++.. .... +++.++++..++.+.. .....+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHHH
Confidence 999999988 4699999987421 1111 2344445555544333 23345899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
++.+|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999988777999999999999875 999999999999999988775
No 163
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-42 Score=395.31 Aligned_cols=213 Identities=30% Similarity=0.468 Sum_probs=183.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4889999999974 3489999999999999999999999999999999999999999999999999876543 4679
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||+|++.+|+. |++||+.|+.. ... .+++.++++..++.++.++. ..+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~-----------~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999965 99999998642 112 23455566666665544443 3589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
||+.+|++||||||||+||+.+++.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999998874 38999999999998765 9999999999999999999987643
No 164
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-42 Score=383.50 Aligned_cols=219 Identities=31% Similarity=0.553 Sum_probs=183.3
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC----CHHH
Q 041277 361 VEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL----QLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~----~~~~ 434 (1133)
++++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 13599999999999999999999999999999999999999999999999998653 3456
Q ss_pred HhhhceEEecCC--CCccccHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHHhCCCcccc-cccCCCCCCChHHHHHHH
Q 041277 435 LRSQMGLVSQEP--ALFATSIKENILFGKED--ASMEEVIEAAKASNAHNFIRQLPQQYDT-QVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 435 ~r~~i~~v~Q~~--~l~~~ti~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqri~ 509 (1133)
+|++||||||+| .+|+.|++|||.++... .+.++..+. +.+.++.+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999997 57888999999986421 233222221 12333333 4442 344567799999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|+++||||||++||+.++..+.+.++++. .|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 4899999999999886 499999999999999999998865
No 165
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-42 Score=376.83 Aligned_cols=220 Identities=33% Similarity=0.510 Sum_probs=186.4
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--C
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--L 430 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~ 430 (1133)
.+.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF---HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCCe---EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 3569999999999743 48999999999999999999999999999999999986 589999999999853 3
Q ss_pred CHHHHhhhceEEecCCCCccccHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 431 QLKWLRSQMGLVSQEPALFATSIKENILFGKE---DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 431 ~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
+...+|++++|++|++.+|+.|++||+.++.. ..+. +++.++++..++.+.+ .....+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHH
Confidence 45677889999999999999999999987532 1122 3344555555543222 22344566799999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
||||++||||++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778899999999999865 9999999999999999999
Q ss_pred hhccc
Q 041277 583 ELIQA 587 (1133)
Q Consensus 583 ~l~~~ 587 (1133)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 98753
No 166
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-42 Score=384.21 Aligned_cols=216 Identities=31% Similarity=0.508 Sum_probs=181.9
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC----CCHHH
Q 041277 361 VEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK----LQLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~----~~~~~ 434 (1133)
++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 1359999999999999999999999999999999999999999999999999863 23556
Q ss_pred HhhhceEEecCC--CCccccHHHHHhcCCCC--CCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 435 LRSQMGLVSQEP--ALFATSIKENILFGKED--ASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 435 ~r~~i~~v~Q~~--~l~~~ti~eni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
.|++||||+|+| .+|+.|++|||.|+... .+.+ ++.++++.+++.+. .....+.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEE----------LLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChh----------hhhCCcccCCHHHHH
Confidence 778899999998 67888999999986321 2222 33444455544311 123345689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. .|.|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998874 38999999999999865 99999999999999999998
Q ss_pred hcc
Q 041277 584 LIQ 586 (1133)
Q Consensus 584 l~~ 586 (1133)
+.+
T Consensus 233 ~~~ 235 (290)
T PRK13634 233 IFA 235 (290)
T ss_pred Hhc
Confidence 865
No 167
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=5.6e-42 Score=387.32 Aligned_cols=226 Identities=27% Similarity=0.354 Sum_probs=187.4
Q ss_pred cEEEEEEEEEcCCCC----------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC
Q 041277 360 EVEFKCVQFAYPSRP----------ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK 429 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~----------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~ 429 (1133)
-|+++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996421 2458999999999999999999999999999999999999999999999999988
Q ss_pred CCHH---HHhhhceEEecCC--CCcc-ccHHHHHhcCC----CCCCHHH----HHHHHHHhchHHHHHhCCCcccccccC
Q 041277 430 LQLK---WLRSQMGLVSQEP--ALFA-TSIKENILFGK----EDASMEE----VIEAAKASNAHNFIRQLPQQYDTQVGE 495 (1133)
Q Consensus 430 ~~~~---~~r~~i~~v~Q~~--~l~~-~ti~eni~~~~----~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~ 495 (1133)
++.. .+|++|+||+|+| .+++ .||.|||.++. +..+.++ +.++++.+++.+ .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 8754 3567899999998 4664 69999997532 1123222 334444444411 12334
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeC
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQD 572 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~ 572 (1133)
.+.+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5568999999999999999999999999999999999999999999998753 8999999999999976 999999999
Q ss_pred CeEEeecCcchhccccchhhHHH
Q 041277 573 GQVMETGSHDELIQAESGLYTSL 595 (1133)
Q Consensus 573 G~i~~~g~~~~l~~~~~~~~~~~ 595 (1133)
|+|++.|+++++.++....|.+.
T Consensus 238 G~ive~g~~~~i~~~~~~py~~~ 260 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTKA 260 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHHH
Confidence 99999999999987555667653
No 168
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-42 Score=372.85 Aligned_cols=215 Identities=32% Similarity=0.533 Sum_probs=181.7
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HHh
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WLR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~r 436 (1133)
|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997531 12599999999999999999999999999999999999999999999999998876543 347
Q ss_pred hhceEEecCCCCcc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 437 SQMGLVSQEPALFA-TSIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~-~ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
+.++|+||++.+|. .|++||+.++.. ... .+++.++++..++.+..+ ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 78999999999997 599999987532 111 223444555555544433 344689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||||++.+|+++||||||++||+.+++.+.+.|+++. + ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999874 3 8999999999999875 99999999999999999888754
No 169
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-42 Score=383.51 Aligned_cols=215 Identities=25% Similarity=0.434 Sum_probs=180.9
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC---------
Q 041277 361 VEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK--------- 429 (1133)
Q Consensus 361 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~--------- 429 (1133)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1358999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CCHHHHhhhceEEecCC--CCccccHHHHHhcCCCC--CCH----HHHHHHHHHhchH-HHHHhC
Q 041277 430 ---------------LQLKWLRSQMGLVSQEP--ALFATSIKENILFGKED--ASM----EEVIEAAKASNAH-NFIRQL 485 (1133)
Q Consensus 430 ---------------~~~~~~r~~i~~v~Q~~--~l~~~ti~eni~~~~~~--~~~----~~~~~~~~~~~~~-~~i~~l 485 (1133)
.+...+|++||||||+| .+|..||+|||.|+... ... +++.++++..++. ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 13456788999999986 67888999999987431 222 2344455555542 22
Q ss_pred CCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-c
Q 041277 486 PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-N 563 (1133)
Q Consensus 486 ~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~ 563 (1133)
......+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .
T Consensus 159 -------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 159 -------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 334456899999999999999999999999999999999999999999998874 4899999999999875 4
Q ss_pred CCEEEEEeCCeEEeecCcchhcc
Q 041277 564 ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 564 ~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||||++|++|++++.|+++++.+
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999875
No 170
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.4e-41 Score=362.29 Aligned_cols=203 Identities=36% Similarity=0.596 Sum_probs=179.8
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999743 2358999999999999999999999999999999999999999999999999988888788889
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|+||+|+|.+|++|++||+.+... ...+++.++++ +++++.+||||||||++||||++.+|
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999986532 33344333322 23456799999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCc
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 581 (1133)
+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999988778999999999999878999999999999988763
No 171
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-42 Score=381.07 Aligned_cols=218 Identities=31% Similarity=0.496 Sum_probs=183.9
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH----hh
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL----RS 437 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~----r~ 437 (1133)
.++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQT---VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCCc---eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 466888888643 48999999999999999999999999999999999999999999999999987665443 35
Q ss_pred hceEEecCCCCcc-ccHHHHHhcCCC--CC----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFA-TSIKENILFGKE--DA----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~-~ti~eni~~~~~--~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+++|++|++.+|. .|++||+.++.. .. ..+++.++++..++.+++.+.| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 7999999999985 599999987521 11 1234556666667666555544 4899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
|||++++|++|||||||++||+.+++.+.+.|.++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998874 37999999999998865 999999999999999999998764
Q ss_pred cchhhH
Q 041277 588 ESGLYT 593 (1133)
Q Consensus 588 ~~~~~~ 593 (1133)
....|.
T Consensus 252 ~~~~~~ 257 (269)
T cd03294 252 PANDYV 257 (269)
T ss_pred cCcHHH
Confidence 444443
No 172
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-42 Score=378.11 Aligned_cols=219 Identities=32% Similarity=0.476 Sum_probs=186.1
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCC--C
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDK--L 430 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~--~ 430 (1133)
.+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999974 3589999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhhhceEEecCCCCccccHHHHHhcCCC--CC--C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 431 QLKWLRSQMGLVSQEPALFATSIKENILFGKE--DA--S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 431 ~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
+...+|++++|++|++.+|+.|++||+.++.. .. . .+++.++++..++.+++. +.....+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 45567889999999999998899999987531 10 1 233455555555543221 223445678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988778899999999999865 999999999999999999
Q ss_pred chhcc
Q 041277 582 DELIQ 586 (1133)
Q Consensus 582 ~~l~~ 586 (1133)
+++..
T Consensus 247 ~~~~~ 251 (267)
T PRK14235 247 EKMFT 251 (267)
T ss_pred HHHHh
Confidence 98865
No 173
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.8e-42 Score=366.14 Aligned_cols=199 Identities=30% Similarity=0.532 Sum_probs=171.8
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999741 348999999999999999999999999999999999999999999999998854 456678999
Q ss_pred EecCC--CCccccHHHHHhcCCCCC--CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 442 VSQEP--ALFATSIKENILFGKEDA--SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 442 v~Q~~--~l~~~ti~eni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
++|++ .++..|++||+.++.+.. ..+++.++++..++.++.++.| .+||||||||++||||++.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 467789999998864322 2345667777777766554444 48999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHH-hCCCeEEEEecCcchhhc-CCEEEEEeCCeEE
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 576 (1133)
|+++||||||++||+.+++.+.+.|++. .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 458999999999999875 9999999999975
No 174
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-42 Score=393.40 Aligned_cols=204 Identities=36% Similarity=0.573 Sum_probs=175.6
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH----hhhceEEecCCCCccc-c
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL----RSQMGLVSQEPALFAT-S 452 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~~-t 452 (1133)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ +++++||+|++.+|+. |
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999988776543 3579999999999964 9
Q ss_pred HHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCc
Q 041277 453 IKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEA 526 (1133)
Q Consensus 453 i~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ 526 (1133)
++||+.++.. ... .+++.++++..++.++..+.| .+||||||||++|||||+.+|++||||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999998632 111 234556666666655555444 58999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhh
Q 041277 527 TSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLY 592 (1133)
Q Consensus 527 ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 592 (1133)
|++||+.+++.+++.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 99999999999999998874 48999999999998865 99999999999999999999876443334
No 175
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=8.6e-42 Score=368.69 Aligned_cols=216 Identities=27% Similarity=0.452 Sum_probs=178.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 439 (1133)
|+++||+++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++++
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGKS---QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCCe---eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 4789999999743 48999999999999999999999999999999999999999999999999987776554 5679
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
+|+||++.+|.. |++||+.++.......+..+. +.+.++.++ +++........+||||||||++||||++.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 999999886432211111111 111222221 1222334556789999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999998875 58999999999998766 9999999999999999887764
No 176
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-42 Score=374.05 Aligned_cols=217 Identities=30% Similarity=0.538 Sum_probs=181.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999751 34899999999999999999999999999999999999999999999999998877777788999
Q ss_pred EEecCCCCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccc--cccCCCCCCChHHHHHHHHHHHHh
Q 041277 441 LVSQEPALFA-TSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDT--QVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
|+||++.+|. .|++||+.++.. ....++.. ..+.+.++.+ |+.. ...+.+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999986 599999987531 11111111 1112233333 2221 334556789999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++|+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999875 38999999999998765 99999999999999999988865
No 177
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-42 Score=366.09 Aligned_cols=203 Identities=25% Similarity=0.429 Sum_probs=175.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ ++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..++++++
T Consensus 1 i~~~~~~~~~~~~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECCE---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 5789999999643 4899999999999 99999999999999999999999999999999999987766 66788999
Q ss_pred EEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+|.. |++||+.+... ... .+++.++++..++.++.+. ...+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHH
Confidence 99999999876 99999986321 111 2345566666666554433 235899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
++++|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988767999999999999865 9999999999998765
No 178
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-42 Score=367.81 Aligned_cols=209 Identities=24% Similarity=0.408 Sum_probs=178.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGDF---EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECCE---EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 5789999999743 499999999999999999999999999999999999999999999999988653 356678899
Q ss_pred EEecCCCCccc-cHHHHHhcCCC--CC----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE--DA----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~--~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+++. |++||+.++.. .. ..+++.++++..++.+..+.. ..+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999998875 99999987421 11 123455666666665544433 35899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
++.+|+++||||||++||+++.+.+.+.|.++. + ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999998864 3 7899999999999876 999999999999999987764
No 179
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=378.01 Aligned_cols=216 Identities=28% Similarity=0.481 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-|+++|++++|++....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334589999999999999999999999999999999999999999999999999877777788899
Q ss_pred eEEecCCC--CccccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEPA--LFATSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~~--l~~~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+|++|+|. ++..|+.|||.++.. .... +++.++++.+++.++.... ..+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999984 567899999987532 1222 2345566666666554433 358999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+++|+++||||||++||+.+.+.+.+.++++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999988753 899999999999988899999999999999999999875
No 180
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-42 Score=391.81 Aligned_cols=218 Identities=31% Similarity=0.527 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999974 348999999999999999999999999999999999999999999999999987654 4678
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
||||+|++.+|+. |++|||.|+.. ..+. +++.+.++..++.++.++.| .+||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999975 99999998743 1222 34455566666655444443 58999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcccc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
|||+.+|++||||||||+||+.+++.+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998887764 37999999999998765 9999999999999999999998644
Q ss_pred chhh
Q 041277 589 SGLY 592 (1133)
Q Consensus 589 ~~~~ 592 (1133)
...|
T Consensus 242 ~~~~ 245 (377)
T PRK11607 242 TTRY 245 (377)
T ss_pred ccHH
Confidence 4333
No 181
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-42 Score=345.93 Aligned_cols=220 Identities=26% Similarity=0.445 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 438 (1133)
-++++|++..|+.. ++|+++||++++||+++++||||+||||++++|+|+.+|.+|+|.++|+|+...+++.. |..
T Consensus 3 mL~v~~l~~~YG~~---~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGKI---QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccce---eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 37899999999853 59999999999999999999999999999999999999999999999999999987765 567
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
|+||||.-.+|+. ||+||+.+|......++. ....+++..+-+| .+......++.+|||||||.+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999976 999999987432221111 1111333445556 366667788899999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccc
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
|++|+|||||.+|-|.-.+.|.+.|+++.+ +.||++|.++...... |||.+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999874 6799999999998765 999999999999999999999873
No 182
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.3e-41 Score=370.79 Aligned_cols=240 Identities=26% Similarity=0.418 Sum_probs=202.0
Q ss_pred HHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 332 ERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 332 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+.+.+++..+++.+. ..+.....+.|+++|+++.. +++|+|+||+|++||+++|+||||||||||+++|+|
T Consensus 15 ~~~~~~~~~~~~~~~----~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 15 EGFGELLEKAKQENN----DRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred HHHHHHHhccccccc----ccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 456666665543221 22233345679999999952 248999999999999999999999999999999999
Q ss_pred ccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccc
Q 041277 412 FYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT 491 (1133)
Q Consensus 412 ~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 491 (1133)
+++|++|+|.++| .|+|++|++.+|+.|++||+.++.. ....++.++++..++.+.+..+|.++++
T Consensus 86 l~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 86 ELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 9999999999998 4999999999999999999998643 2334556667777888899999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHH-HHHhCCCeEEEEecCcchhhcCCEEEEE
Q 041277 492 QVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL-DKAVVGRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 492 ~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
.+++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+ +...+++|+|++||+++.+..||++++|
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l 231 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999888754 5555689999999999998889999999
Q ss_pred eCCeEEeecCcchhccccchhhHHH
Q 041277 571 QDGQVMETGSHDELIQAESGLYTSL 595 (1133)
Q Consensus 571 ~~G~i~~~g~~~~l~~~~~~~~~~~ 595 (1133)
++|++++.|+++++.+. ...|...
T Consensus 232 ~~G~i~~~g~~~~~~~~-~~~~~~~ 255 (282)
T cd03291 232 HEGSSYFYGTFSELQSL-RPDFSSK 255 (282)
T ss_pred ECCEEEEECCHHHHHhc-chHHHHH
Confidence 99999999999998752 3344433
No 183
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-41 Score=378.80 Aligned_cols=214 Identities=29% Similarity=0.494 Sum_probs=183.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC--CCCHHHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID--KLQLKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 437 (1133)
-|+++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 235999999999999999999999999999999999999999999999999984 234566788
Q ss_pred hceEEecCC--CCccccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 438 QMGLVSQEP--ALFATSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 438 ~i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
.+||+||+| .+++.|++||+.++.. ..+. +++.++++..++.++. ...+.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 999999998 5678899999987532 1122 3345555666655433 3345689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988753 8999999999999874 99999999999999999999876
No 184
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=6.3e-42 Score=368.52 Aligned_cols=204 Identities=34% Similarity=0.484 Sum_probs=170.9
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH----HH
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK----WL 435 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~----~~ 435 (1133)
|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999997421 13599999999999999999999999999999999999999999999999998876643 24
Q ss_pred hhhceEEecCCCCccc-cHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 436 RSQMGLVSQEPALFAT-SIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~-ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
+++++|++|++.+|.. |++||+.++... .. .+++.++++..++.+ .......+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-----------RLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-----------hhhcChhhcCHHHHHHH
Confidence 5689999999999876 999999885321 11 123344444444433 33444568999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
+||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 8999999999998878999999999974
No 185
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.2e-41 Score=377.19 Aligned_cols=223 Identities=26% Similarity=0.424 Sum_probs=184.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HHh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~r 436 (1133)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999964 3489999999999999999999999999999999999999999999999998776543 356
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKE---DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++++|++|++.+|+. |++||+.++.. ..+. +++.+.++..++.+.. .....+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-----------KLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHH
Confidence 789999999999976 99999986421 1112 1233344444443322 334468999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+||||++.+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999874 37999999999998876 9999999999999999999987
Q ss_pred cccchhhHHHH
Q 041277 586 QAESGLYTSLV 596 (1133)
Q Consensus 586 ~~~~~~~~~~~ 596 (1133)
+.....+..++
T Consensus 233 ~~~~~~~~~~~ 243 (269)
T PRK11831 233 ANPDPRVRQFL 243 (269)
T ss_pred cCCcHHHHHHH
Confidence 63333344444
No 186
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=373.43 Aligned_cols=218 Identities=29% Similarity=0.440 Sum_probs=184.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCCCHHH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~~~~~ 434 (1133)
.++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQV---EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECCe---eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 48899999999743 489999999999999999999999999999999999974 6999999999998877778
Q ss_pred HhhhceEEecCCCCc-cccHHHHHhcCCCC----CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 435 LRSQMGLVSQEPALF-ATSIKENILFGKED----AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l~-~~ti~eni~~~~~~----~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
+|+.|+|++|++.++ ..|++||+.++... .. .+++.++++..++.+.+. ........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 888999999999766 56999999875321 11 123444555554432211 123344568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998865 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 653
No 187
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1e-41 Score=363.86 Aligned_cols=203 Identities=26% Similarity=0.421 Sum_probs=177.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999964 3599999999999999999999999999999999999999999999999988654 45677899
Q ss_pred EEecCCCCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 441 LVSQEPALFA-TSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
|+||++.++. .|++||+.++.. ..+.+++.++++..++.+...+. ..+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 699999987532 22455677777777776655443 358999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998865 58999999999999875 9999999999998765
No 188
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=6.5e-42 Score=389.81 Aligned_cols=207 Identities=26% Similarity=0.414 Sum_probs=175.6
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe----ecCCCCHHHH---h-hhceEEecCCCC
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV----SIDKLQLKWL---R-SQMGLVSQEPAL 448 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~----~~~~~~~~~~---r-~~i~~v~Q~~~l 448 (1133)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|. ++...+...+ | ++|+||+|++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 4899999999999999999999999999999999999999999999996 5666655444 3 579999999999
Q ss_pred cc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 041277 449 FA-TSIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRIL 521 (1133)
Q Consensus 449 ~~-~ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~il 521 (1133)
|+ .|++||+.++.. ..+ .+++.++++..++.++.+.. ..+||||||||++|||||+.+|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 699999998642 111 23455666666665554443 3589999999999999999999999
Q ss_pred EEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhhHH
Q 041277 522 LLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYTS 594 (1133)
Q Consensus 522 llDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 594 (1133)
|||||||+||+.+++.+++.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++..+...|.+
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 99999999999999999999988753 8999999999998754 9999999999999999999998644444543
No 189
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=8.4e-42 Score=383.44 Aligned_cols=212 Identities=26% Similarity=0.475 Sum_probs=180.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5899999999974 35999999999999999999999999999999999999999999999999987654 4578899
Q ss_pred eEEecCCCCcc-ccHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFA-TSIKENILFGKE--DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~-~ti~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||||++.++. .|++||+.+... ..+.. ++.++++..++ ++..++.+ .+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL-------ENKADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chHhcCch----hhCCHHHHHHHHHHH
Confidence 99999999986 599999985321 11222 22233333333 22333333 479999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+++|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999875 48999999999999976 99999999999999999999865
No 190
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.7e-40 Score=387.29 Aligned_cols=199 Identities=29% Similarity=0.476 Sum_probs=158.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|+.+ ++|+|+||++.+|+++||||+||||||||+++|+|...|++|+|...+. -++
T Consensus 3 ~i~~~~ls~~~g~~---~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGDR---PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCCc---eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 47899999999754 5999999999999999999999999999999999999999999998762 269
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCCC--HHHHHHHHH------------------H-------hchHHHHHhCCCcccc
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDAS--MEEVIEAAK------------------A-------SNAHNFIRQLPQQYDT 491 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~~--~~~~~~~~~------------------~-------~~~~~~i~~l~~g~~t 491 (1133)
+|++|++.+.+. ||.+.+.-+..... ..+..++.. . +.+...+..+ |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999866 99999987653211 011111100 0 1112222322 2222
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEE
Q 041277 492 QVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVV 570 (1133)
Q Consensus 492 ~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l 570 (1133)
. .....+||||||.|++|||||+.+|++|||||||++||.++..-+.+.|.+. +| |+|+||||-+++.. |++|+-+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 2 3344589999999999999999999999999999999999999999998754 45 99999999999987 9999999
Q ss_pred eCCeEEe
Q 041277 571 QDGQVME 577 (1133)
Q Consensus 571 ~~G~i~~ 577 (1133)
++|++..
T Consensus 224 d~g~l~~ 230 (530)
T COG0488 224 DRGKLTP 230 (530)
T ss_pred cCCceeE
Confidence 9997753
No 191
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=369.71 Aligned_cols=210 Identities=27% Similarity=0.446 Sum_probs=176.7
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---H
Q 041277 360 EVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---L 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~ 435 (1133)
-++++||+++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997432 135999999999999999999999999999999999999999999999999998877543 3
Q ss_pred h-hhceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 436 R-SQMGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 436 r-~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
| +.++|++|++.+|+. |++||+.++.. .... +++.++++..++. ........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-----------HRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHH
Confidence 3 579999999998875 99999987421 1111 2334444444443 33344556899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecC
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 580 (1133)
++||||++.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4899999999999998889999999999998775
No 192
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=375.15 Aligned_cols=217 Identities=29% Similarity=0.441 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecC--CCCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSID--KLQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~--~~~~ 432 (1133)
.|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. +.+.
T Consensus 4 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGSN---HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCCe---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 48899999999743 489999999999999999999999999999999999987 4999999999987 4455
Q ss_pred HHHhhhceEEecCCCCccc-cHHHHHhcCCC--C--CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 433 KWLRSQMGLVSQEPALFAT-SIKENILFGKE--D--ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
..+|++++|++|++.+|.. |++||+.++.. . ... +++.++++..++.+.+. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 5678899999999999976 99999987531 1 011 23344444444432221 2234556789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777999999999999865 9999999999999999999
Q ss_pred hhcc
Q 041277 583 ELIQ 586 (1133)
Q Consensus 583 ~l~~ 586 (1133)
++.+
T Consensus 234 ~~~~ 237 (253)
T PRK14267 234 KVFE 237 (253)
T ss_pred HHHh
Confidence 9865
No 193
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=373.54 Aligned_cols=218 Identities=30% Similarity=0.464 Sum_probs=183.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC--C---CccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA--P---LGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~--~---~~G~i~~~g~~~~~--~~~ 432 (1133)
-|+++|++++|+.+ ++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQH---HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECCe---eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 48999999999743 48999999999999999999999999999999999997 3 58999999999864 344
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC---CCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED---ASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+|+.++|+||++.+|+.|++||+.++... ...+ ++.++++..++.+++ .+.....+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHH
Confidence 5678899999999999989999999875321 1122 233344444443322 1233456678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
.++
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 653
No 194
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.6e-41 Score=373.33 Aligned_cols=214 Identities=29% Similarity=0.476 Sum_probs=180.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC---------
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ--------- 431 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~--------- 431 (1133)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++
T Consensus 1 i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGIL---TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCCe---eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 5789999999743 4899999999999999999999999999999999999999999999999987543
Q ss_pred ----HHHHhhhceEEecCCCCcc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 432 ----LKWLRSQMGLVSQEPALFA-TSIKENILFGKE---DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 432 ----~~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
...+|+.++|++|++.+|. .|++||+.++.. .... +++.++++..++.+. ....+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------ADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hhcChhh
Confidence 2356788999999999885 699999987521 1111 233444444444433 3444568
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEE
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 576 (1133)
||||||||++||||++++|+++||||||++||+.++..+.+.|++..+ ++|+|++||+++.+.. ||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998743 8999999999999865 9999999999999
Q ss_pred eecCcchhcccc
Q 041277 577 ETGSHDELIQAE 588 (1133)
Q Consensus 577 ~~g~~~~l~~~~ 588 (1133)
+.|+++++.+..
T Consensus 227 ~~g~~~~~~~~~ 238 (252)
T TIGR03005 227 EQGKPDEIFRQP 238 (252)
T ss_pred EeCCHHHHhcCC
Confidence 999999987543
No 195
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.6e-41 Score=365.36 Aligned_cols=207 Identities=24% Similarity=0.431 Sum_probs=175.2
Q ss_pred EEEEEEEEEcCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 361 VEFKCVQFAYPSRPE-SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
|+++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999975311 159999999999999999999999999999999999999999999999999875 345678899
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
+|++|++.+|.. |++||+.+... ... .+++.++++..++.+.+ .....+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999976421 111 23344455555554433 3445689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998874 58999999999998865 9999999999998764
No 196
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-41 Score=375.38 Aligned_cols=213 Identities=30% Similarity=0.468 Sum_probs=186.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999974 3589999999999999999999999999999999999999999999999999887777888899
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCC----------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKED----------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
+|++|++.++.. |+.||+.++... ...+++.++++.+++.+++...| .+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 999999877655 999999875311 11234566677777665544443 48999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+||||++.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 37999999999999865 9999999999999999999886
Q ss_pred c
Q 041277 586 Q 586 (1133)
Q Consensus 586 ~ 586 (1133)
+
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 5
No 197
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.6e-41 Score=369.11 Aligned_cols=216 Identities=26% Similarity=0.457 Sum_probs=180.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 439 (1133)
++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCCE---EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 4789999999743 48999999999999999999999999999999999999999999999999887765543 5679
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 440 GLVSQEPALFAT-SIKENILFGKED--ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+|++|++.+|+. |++||+.++.+. ...++..+ .+++.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 999999875321 11111111 122333333 34444455667999999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 48999999999987765 99999999999999999888754
No 198
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=372.80 Aligned_cols=220 Identities=25% Similarity=0.473 Sum_probs=187.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999974 35999999999999999999999999999999999999999999999999998877777888899
Q ss_pred EEecCCCCccc-cHHHHHhcCCCC----------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKED----------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
|++|++.++.+ |++||+.++... ...+++.++++..++.+..+. ....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHH
Confidence 99999988876 999999886311 112344555665565544333 34689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
||||++.+|++|||||||++||+++++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~- 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT- 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC-
Confidence 9999999999999999999999999999999998865 48999999999999875 99999999999999999998865
Q ss_pred cchhhHHHH
Q 041277 588 ESGLYTSLV 596 (1133)
Q Consensus 588 ~~~~~~~~~ 596 (1133)
...+.+.+
T Consensus 228 -~~~~~~~~ 235 (255)
T PRK11231 228 -PGLLRTVF 235 (255)
T ss_pred -HHHHHHHh
Confidence 23444444
No 199
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-41 Score=381.65 Aligned_cols=226 Identities=28% Similarity=0.406 Sum_probs=187.1
Q ss_pred cEEEEEEEEEcCCCC-------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH
Q 041277 360 EVEFKCVQFAYPSRP-------ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~ 432 (1133)
-|+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhhhceEEecCCC--Ccc-ccHHHHHhcCC---CCCC----HHHHHHHHHHhchHH-HHHhCCCcccccccCCCC
Q 041277 433 K---WLRSQMGLVSQEPA--LFA-TSIKENILFGK---EDAS----MEEVIEAAKASNAHN-FIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 433 ~---~~r~~i~~v~Q~~~--l~~-~ti~eni~~~~---~~~~----~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~ 498 (1133)
. .+|++|+||+|+|. +++ .|+.+|+..+. .... .+++.++++.+++.+ .. ...+.
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~p~ 153 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHY-----------DRYPH 153 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHh-----------cCCCc
Confidence 3 46778999999983 555 38998886321 1111 234455555555532 22 23346
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999998874 38999999999999976 999999999999
Q ss_pred EeecCcchhccccchhhHHHH
Q 041277 576 METGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 576 ~~~g~~~~l~~~~~~~~~~~~ 596 (1133)
+|.|+.+++.++....|.+..
T Consensus 234 ve~g~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 234 VEKGTKEQIFNNPRHPYTQAL 254 (327)
T ss_pred EEECCHHHHhcCCCCHHHHHH
Confidence 999999999875556676543
No 200
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-41 Score=369.29 Aligned_cols=205 Identities=30% Similarity=0.460 Sum_probs=177.3
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .++++
T Consensus 11 ~~l~i~~l~~~~~~~---~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECCc---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 359999999999743 4899999999999999999999999999999999999999999999998763 45678
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 439 MGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 439 i~~v~Q~~~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
++|++|++.+|+ .|++||+.++......+++.++++..++.+... ....+||||||||++|||||+++
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999987 599999998643222445566666666654433 34468999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
|+++||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|+++++|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998863 37999999999998865 9999999999999988765
No 201
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-41 Score=373.74 Aligned_cols=213 Identities=28% Similarity=0.520 Sum_probs=182.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC-HHHHhhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ-LKWLRSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~-~~~~r~~i 439 (1133)
++++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 6899999999632 34999999999999999999999999999999999999999999999999997765 35677889
Q ss_pred eEEecCCC--CccccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEPA--LFATSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~~--l~~~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+|++|+|. ++..|++||+.++... .+ .+++.++++..++.++.. ..+..||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999985 4667999999886321 12 223444555555544433 34468999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+.+|+++||||||++||+.++..+.+.++++. +|+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999998875 5899999999999997899999999999999999988765
No 202
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-41 Score=370.52 Aligned_cols=218 Identities=32% Similarity=0.515 Sum_probs=183.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCC--CC
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDK--LQ 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~--~~ 431 (1133)
+.|+++||+++|+++ ++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGDF---QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 458999999999743 489999999999999999999999999999999999863 69999999999864 34
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKE--DA-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
...+|+.++|++|++.+|+.|++||+.++.. .. . .+++.++++..++.+.+. ......+.+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 5567889999999999998999999987531 11 1 223444444544432221 22344567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|||++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998865 99999999999999999998
Q ss_pred hcc
Q 041277 584 LIQ 586 (1133)
Q Consensus 584 l~~ 586 (1133)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14240 232 LFT 234 (250)
T ss_pred HHh
Confidence 865
No 203
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.6e-41 Score=364.09 Aligned_cols=203 Identities=33% Similarity=0.544 Sum_probs=172.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNV---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECCe---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 4789999999753 489999999999999999999999999999999999999999999999998765432 46799
Q ss_pred EEecCCCCcc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFA-TSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+|. .|++||+.++.. .... +++.++++..++.+.+.. ...+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999986 599999987521 1122 234445555555544443 345899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
++.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999874 38999999999998876 9999999999999875
No 204
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-41 Score=376.32 Aligned_cols=216 Identities=31% Similarity=0.527 Sum_probs=186.7
Q ss_pred cEEEEEEEEEcCCCC---CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC-HHHH
Q 041277 360 EVEFKCVQFAYPSRP---ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ-LKWL 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~---~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~-~~~~ 435 (1133)
-++++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 245999999999999999999999999999999999999999999999999987643 3557
Q ss_pred hhhceEEecCCC--CccccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 436 RSQMGLVSQEPA--LFATSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 436 r~~i~~v~Q~~~--l~~~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
++++||+||+|. ++..|+.||+.|+... .. .+++.++++.+++.++..+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 889999999984 6667999999986321 12 234566667777766655544 5899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhc
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
++|||||+.+|+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 389999999999998789999999999999999999987
Q ss_pred c
Q 041277 586 Q 586 (1133)
Q Consensus 586 ~ 586 (1133)
.
T Consensus 233 ~ 233 (280)
T PRK13633 233 K 233 (280)
T ss_pred c
Confidence 5
No 205
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-41 Score=366.55 Aligned_cols=206 Identities=31% Similarity=0.481 Sum_probs=173.9
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997421 1359999999999999999999999999999999999999999999999998863 35689
Q ss_pred eEEecCCCCcc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFA-TSIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~-~ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
+||+|++.+|. .|++||+.++.. ... .+++.++++..++.+++.+. ..+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAY-----------PHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHH
Confidence 99999999987 599999987532 111 23445555555555444433 3589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEe--CCeEEeecCcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQ--DGQVMETGSHD 582 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~~ 582 (1133)
|++.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|+ +|+++++++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999998873 37999999999998765 99999999 79999988753
No 206
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-41 Score=375.09 Aligned_cols=215 Identities=32% Similarity=0.551 Sum_probs=187.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc---cEEEECCeecCCCCHHHHh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG---GEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~---G~i~~~g~~~~~~~~~~~r 436 (1133)
.|+++|++|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999643 2358999999999999999999999999999999999999998 8999999999877777778
Q ss_pred hhceEEecCCC--CccccHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 437 SQMGLVSQEPA--LFATSIKENILFGKED--ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 ~~i~~v~Q~~~--l~~~ti~eni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
+++||++|+|. +++.|++||+.++.+. .+. +++.++++..++.++....| .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 89999999984 5678999999876322 222 33556677777766555444 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988753 899999999999987899999999999999999998865
No 207
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.7e-41 Score=373.70 Aligned_cols=225 Identities=28% Similarity=0.411 Sum_probs=183.2
Q ss_pred EEEEEEEEEcCCC------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH
Q 041277 361 VEFKCVQFAYPSR------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~ 434 (1133)
|+++||+++|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1346999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhhhceEEecCCC--Ccc-ccHHHHHhcCCC---CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 435 ---LRSQMGLVSQEPA--LFA-TSIKENILFGKE---DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 435 ---~r~~i~~v~Q~~~--l~~-~ti~eni~~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
+|+.|+|++|++. ++. .|++||+.++.. ... .+++.++++..++.+ ......+.+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 5778999999983 443 599999975321 111 123333344333321 22344567899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEee
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMET 578 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 578 (1133)
||||||++||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998753 8999999999999875 999999999999999
Q ss_pred cCcchhccccchhhHHH
Q 041277 579 GSHDELIQAESGLYTSL 595 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~ 595 (1133)
|+++++...++..++.+
T Consensus 233 g~~~~~~~~~~~~~~~~ 249 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNL 249 (265)
T ss_pred CCHHHHcCCCCHHHHHH
Confidence 99999987433334434
No 208
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-41 Score=373.07 Aligned_cols=219 Identities=31% Similarity=0.487 Sum_probs=184.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--CC
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--LQ 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~~ 431 (1133)
..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 45999999999974 348999999999999999999999999999999999987 689999999999863 45
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCC--CC---HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKED--AS---MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
...+|++++|++|++.+|..|++||+.++... .. .+++.++++..++.. +.++.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHH
Confidence 66778899999999999988999999976421 11 223344444444322 2223344556789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeC-----------Ce
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQD-----------GQ 574 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-----------G~ 574 (1133)
|++|||||+++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988778999999999998865 999999996 67
Q ss_pred EEeecCcchhccc
Q 041277 575 VMETGSHDELIQA 587 (1133)
Q Consensus 575 i~~~g~~~~l~~~ 587 (1133)
+++.|+++++.+.
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 8999999998753
No 209
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.9e-41 Score=358.11 Aligned_cols=200 Identities=36% Similarity=0.562 Sum_probs=180.3
Q ss_pred EEEEEEEEEcCCCCC--CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 361 VEFKCVQFAYPSRPE--SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
++++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999975311 3599999999999999999999999999999999999999999999998 5
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|+|++|+|.+|+.|++||+.++.. ...++..++++.+++.+++..+|.|+++.+++.+.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 3455677778888899999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHH-HHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 519 RILLLDEATSALDSESERVVQE-ALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~-~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
+++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 455553 4799999999999988899999999985
No 210
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.3e-41 Score=369.42 Aligned_cols=212 Identities=31% Similarity=0.523 Sum_probs=180.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC--HHHHhhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ--LKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~--~~~~r~~ 438 (1133)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999974 34899999999999999999999999999999999999999999999999987643 3566788
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCCC---CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 439 MGLVSQEPALFA-TSIKENILFGKE---DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 439 i~~v~Q~~~l~~-~ti~eni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
++|++|++.++. .|++||+.++.. ..+.+ ++.++++..++ +........+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGL-----------AERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hHHHhcChhhcCHHHHHHHHH
Confidence 999999998886 599999987531 11222 23333444433 333344556899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||++.+|+++||||||++||++++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 999999999999999999999999999999998875 48999999999999865 99999999999999999988865
No 211
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-41 Score=373.93 Aligned_cols=215 Identities=31% Similarity=0.564 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 24589999999999999999999999999999999999999999999999999877777888899
Q ss_pred eEEecCCC--CccccHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEPA--LFATSIKENILFGKE--DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~~--l~~~ti~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+|++|+|. ++..|++||+.++.. ..+.+ .+.++++..++.+++.+. ..+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999983 456799999987532 12222 244555556665554443 468999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+.+|++|||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+..||++++|++|++++.|+.+++.+
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999875 3 589999999999887899999999999999999888765
No 212
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-41 Score=374.95 Aligned_cols=213 Identities=27% Similarity=0.505 Sum_probs=185.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 24899999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEecCCC--CccccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 441 LVSQEPA--LFATSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 441 ~v~Q~~~--l~~~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
||+|+|. +|+.|++||+.++.. ..+. +++.++++..++.+++.+.| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 9999983 677899999987532 1222 23556666666665554443 589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999999988753 899999999999986 599999999999999999999875
No 213
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-42 Score=334.39 Aligned_cols=212 Identities=27% Similarity=0.475 Sum_probs=183.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
+++++++++|++. ..+++|+||+++.||++||.|||||||||+|+.|..++.|++|+|++||.|.... +...|++||
T Consensus 2 l~v~~l~K~y~~~--v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccCH--HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 6789999999852 3489999999999999999999999999999999999999999999999998764 456788999
Q ss_pred EEecCCCCccc-cHHHHHhcCCC------CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE------DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
+++-+.-++.. |++|||.|-.. .....++.+..+..++.+.+++ +..++|-|+||||+||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~r-----------Rv~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-----------RVGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHH-----------HHhhhchhhHHHHHHHHH
Confidence 99987778755 99999987321 1123445555555555555443 334799999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|++||++++||||||+||..+.+.+++.+.++.. |+++|+.||.++.++. ||+|+++++|+++..|+.+++.+
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999999998864 9999999999999985 99999999999999999999865
No 214
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-41 Score=381.09 Aligned_cols=228 Identities=23% Similarity=0.350 Sum_probs=184.8
Q ss_pred EEEEEEEEEcCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC----CCccEEEECCeecCCCCHHHH
Q 041277 361 VEFKCVQFAYPSRPE-SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA----PLGGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~----~~~G~i~~~g~~~~~~~~~~~ 435 (1133)
++++|++++|+.+.. ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 789999999975321 358999999999999999999999999999999999997 489999999999988877665
Q ss_pred hh----hceEEecCCC--Ccc-ccHHHHHhc----CCC---CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 436 RS----QMGLVSQEPA--LFA-TSIKENILF----GKE---DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 436 r~----~i~~v~Q~~~--l~~-~ti~eni~~----~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
++ .|+||||+|. +.+ .|+.+++.. ... ....+++.++++..++.+.. ......+.+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 43 6999999995 443 366655532 111 11123455556665553211 12344567999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEee
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMET 578 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 578 (1133)
||||||++|||||+.+|++||+||||++||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999875 38999999999999865 999999999999999
Q ss_pred cCcchhccccchhhHHHH
Q 041277 579 GSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~~ 596 (1133)
|+++++.++....|.+..
T Consensus 236 g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred CCHHHHhhCCCChHHHHH
Confidence 999999876666676544
No 215
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-41 Score=371.64 Aligned_cols=219 Identities=27% Similarity=0.463 Sum_probs=183.0
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCCC--
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKLQ-- 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~~-- 431 (1133)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 35999999999974 3489999999999999999999999999999999999985 7999999999986532
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKE--DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
...+|+.++|++|++.+|+.|++||+.++.. ....+ ++.++++.+++.+.+ .........+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHH
Confidence 3456788999999999999999999987531 12222 233444444432111 1223445678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
...
T Consensus 241 ~~~ 243 (258)
T PRK14268 241 FHN 243 (258)
T ss_pred hcC
Confidence 653
No 216
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.1e-41 Score=367.30 Aligned_cols=215 Identities=28% Similarity=0.493 Sum_probs=180.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999974 35999999999999999999999999999999999999999999999999987766543 45899
Q ss_pred EEecCCCCc-cccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 441 LVSQEPALF-ATSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 441 ~v~Q~~~l~-~~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
|++|++.++ ..|++||+.++.. ....++..+ .+.++++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999885 5699999987532 112221111 122334433 344445566679999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 99999999999999999999999999875 4899999999999987899999999999999999988865
No 217
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.1e-41 Score=363.94 Aligned_cols=205 Identities=29% Similarity=0.504 Sum_probs=171.4
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---Hh
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---LR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~r 436 (1133)
++++||+++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 135899999999999999999999999999999999999999999999999998776543 33
Q ss_pred -hhceEEecCCCCcc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 437 -SQMGLVSQEPALFA-TSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 -~~i~~v~Q~~~l~~-~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++++|++|++.+|+ .|++||+.++.. .... +++.++++..++.+ .......+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH-----------RINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHH
Confidence 67999999999886 599999987421 1111 22334444444433 33344568999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
+||||++.+|++|||||||++||+++++.+.+.|+++. .++|+|++||+++.+..||++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998874 379999999999998889999999999985
No 218
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-41 Score=373.60 Aligned_cols=219 Identities=32% Similarity=0.508 Sum_probs=185.8
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCC--C
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDK--L 430 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~--~ 430 (1133)
.+.++++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~~---~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGDK---QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECCe---eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 3469999999999743 489999999999999999999999999999999999884 89999999999864 3
Q ss_pred CHHHHhhhceEEecCCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 431 QLKWLRSQMGLVSQEPALFATSIKENILFGKE--DA-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 431 ~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
+...+|+.++|++|++.+|+.|++||+.++.. .. . .+++.++++..++.+.+. +..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 45567889999999999998899999987532 11 1 123444555555433222 2345667799999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
||||++||||++++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999988778999999999999865 9999999999999999999
Q ss_pred hhcc
Q 041277 583 ELIQ 586 (1133)
Q Consensus 583 ~l~~ 586 (1133)
++..
T Consensus 253 ~~~~ 256 (272)
T PRK14236 253 TLFT 256 (272)
T ss_pred HHhc
Confidence 8865
No 219
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=371.44 Aligned_cols=218 Identities=32% Similarity=0.480 Sum_probs=182.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc---cCC--CccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF---YAP--LGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~---~~~--~~G~i~~~g~~~~~~--~~ 432 (1133)
.++++|+++.|+. +.+|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4889999999974 3489999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC--C-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED--A-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+++.++|+||++.+|+.|++||+.++... . . .+++.++++..++.+++ .+...+.+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHH
Confidence 5678889999999999988999999875321 1 1 12334444444433222 2234456679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
.++
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 753
No 220
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-41 Score=373.61 Aligned_cols=218 Identities=28% Similarity=0.431 Sum_probs=181.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~~--~~ 432 (1133)
-++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... +.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999974 349999999999999999999999999999999999865 7899999999998653 34
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKE--DA-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..++++++|++|++.+|+.|++||+.++.. .. . .+.+.++++..++.+.+ .......+.+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHH
Confidence 467788999999999998999999987531 11 1 12233344444332111 1223455679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999998765 999999999999999999988
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
...
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 653
No 221
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.1e-41 Score=369.13 Aligned_cols=221 Identities=20% Similarity=0.405 Sum_probs=182.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 439 (1133)
|+++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 3 i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDGF---KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCCe---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 7899999999743 48999999999999999999999999999999999999999999999999887765543 4579
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCCC-H-HH---HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDAS-M-EE---VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~~-~-~~---~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
+|++|++.+|++ |++||+.++..... . .. .........+.+.++.+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999986 99999987532100 0 00 00000111123334443 34444555667899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999988778999999999999876 99999999999999999988864
No 222
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-41 Score=367.75 Aligned_cols=212 Identities=27% Similarity=0.470 Sum_probs=178.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC------CCCHHH
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID------KLQLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~------~~~~~~ 434 (1133)
++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ......
T Consensus 3 l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECCe---eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 7899999999743 4999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhhhceEEecCCCCccc-cHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 435 LRSQMGLVSQEPALFAT-SIKENILFGKE---DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l~~~-ti~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
+|++++|+||++.+|.. |++||+.++.. .... +++.+.++..++.+ .......+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-----------YADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHH
Confidence 77899999999999875 99999974211 1111 22333344444433 334445689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|++||||++.+|+++||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999875 48999999999999865 999999999999999998887
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
.+
T Consensus 229 ~~ 230 (242)
T PRK11124 229 TQ 230 (242)
T ss_pred cC
Confidence 54
No 223
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-41 Score=371.09 Aligned_cols=219 Identities=31% Similarity=0.437 Sum_probs=185.7
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--C
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--L 430 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~ 430 (1133)
...|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 346999999999964 359999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHHhhhceEEecCCCCccccHHHHHhcCCCC--C-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 431 QLKWLRSQMGLVSQEPALFATSIKENILFGKED--A-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 431 ~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
+...+|+.|+|+||++.+|..|++||+.++... . . .+++.++++..++.+++ ++..+..+.+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHH
Confidence 355678889999999999989999999875321 1 1 12344445555543322 23345667799999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
||||++||||++++|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778999999999998865 9999999999999999999
Q ss_pred hhcc
Q 041277 583 ELIQ 586 (1133)
Q Consensus 583 ~l~~ 586 (1133)
++..
T Consensus 248 ~~~~ 251 (267)
T PRK14237 248 NIFT 251 (267)
T ss_pred HHhc
Confidence 9865
No 224
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-41 Score=375.29 Aligned_cols=217 Identities=29% Similarity=0.504 Sum_probs=180.4
Q ss_pred cEEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC----CHH
Q 041277 360 EVEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL----QLK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~----~~~ 433 (1133)
.|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 13599999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhhhceEEecCC--CCccccHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 434 WLRSQMGLVSQEP--ALFATSIKENILFGKE--DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..++.|+|++|+| .+|..|++||+.++.. ....+ .+.++++..++.. ........+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHH
Confidence 6677899999998 5777899999987532 12222 2333333333321 123445568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|.|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 58999999999999865 99999999999999999998
Q ss_pred hcc
Q 041277 584 LIQ 586 (1133)
Q Consensus 584 l~~ 586 (1133)
+..
T Consensus 232 ~~~ 234 (287)
T PRK13641 232 IFS 234 (287)
T ss_pred Hhc
Confidence 865
No 225
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-41 Score=368.79 Aligned_cols=212 Identities=28% Similarity=0.446 Sum_probs=182.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ .+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 7899999999743 4999999999999999999999999999999999999999999999999998877777788899
Q ss_pred EEecCCCC-ccccHHHHHhcCCCCC------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPAL-FATSIKENILFGKEDA------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l-~~~ti~eni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+ +..|++||+.++.... ..+++.++++..++.+... ....+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99999987 5679999998753211 1223445555555544333 3346899999999999999
Q ss_pred Hh------hCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 514 II------KAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 514 l~------~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|+ .+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 48999999999999875 999999999999999999888
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 65
No 226
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.9e-41 Score=370.24 Aligned_cols=216 Identities=31% Similarity=0.504 Sum_probs=179.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC--------H
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ--------L 432 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~--------~ 432 (1133)
++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .
T Consensus 4 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHGQ---TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECCe---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 7899999999743 4899999999999999999999999999999999999999999999999986532 2
Q ss_pred HHHhhhceEEecCCCCcc-ccHHHHHhcCC---CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 433 KWLRSQMGLVSQEPALFA-TSIKENILFGK---EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
..++++++||||++.+|+ .|++||+.++. .....++..+. +.+.++.+ |++......+.+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 456788999999999886 59999998642 11122211111 12233333 333334455679999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998875 48999999999999876 99999999999999999999865
No 227
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-41 Score=370.34 Aligned_cols=218 Identities=28% Similarity=0.457 Sum_probs=181.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc--CC---CccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY--AP---LGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~--~~---~~G~i~~~g~~~~~~--~~ 432 (1133)
.++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|++ .| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~~---~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNKK---KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECCe---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 48999999999743 4899999999999999999999999999999999995 36 599999999998643 34
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCC--C-CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKE--D-AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~-~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+|+.++||||++.+|+.|++||+.++.. . .. .+++.++++..++.+.+ .+.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHH
Confidence 567788999999999999999999987521 1 11 12333344444443222 1234456678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767999999999998765 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
.+.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 753
No 228
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-41 Score=364.81 Aligned_cols=218 Identities=26% Similarity=0.408 Sum_probs=179.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH-Hhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW-LRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 438 (1133)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4889999999974 34999999999999999999999999999999999999999999999999998877544 5778
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
++|++|++.+|.. |++||+.++......++..+.+ .+.++.++. ++........+||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPR-LHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHH-HHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 9999998864222222221111 111222211 11112234568999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998875 58999999999998765 99999999999999999999864
No 229
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-41 Score=369.67 Aligned_cols=217 Identities=31% Similarity=0.469 Sum_probs=181.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~~~ 432 (1133)
.|+++|++|+|+.. ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~~---~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGNY---EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 48999999999743 49999999999999999999999999999999999997 479999999999864 334
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC--C-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED--A-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+++.++|++|++.+|+.|++||+.++... . . .+++.++++..++++.. .......+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 5677889999999999999999999875321 1 1 12333444444432110 1123445679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 999999999999999999998
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 234 ~~ 235 (251)
T PRK14251 234 FI 235 (251)
T ss_pred Hh
Confidence 65
No 230
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-41 Score=373.41 Aligned_cols=212 Identities=31% Similarity=0.467 Sum_probs=179.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC--CCCHHHHhhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID--KLQLKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 438 (1133)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999974 34999999999999999999999999999999999999999999999999985 2334567788
Q ss_pred ceEEecCCC--CccccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 439 MGLVSQEPA--LFATSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 439 i~~v~Q~~~--l~~~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
|+||+|++. ++..|+.+|+.++.. .... +++.++++..++.++.. ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 999999985 566789999987421 1122 23344555555544332 2346899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999998874 58999999999999865 99999999999999999988865
No 231
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.1e-41 Score=364.44 Aligned_cols=212 Identities=29% Similarity=0.471 Sum_probs=178.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH-Hhhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW-LRSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 439 (1133)
|+++||+++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQS---HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCCe---EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 4789999999743 5899999999999999999999999999999999999999999999999998776554 46689
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCC--CHHH-HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDA--SMEE-VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~--~~~~-~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
+|++|++.+|.. |++||+.++.... ..++ ..++++..+ ++.........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999976 9999998763221 1111 122222221 1222234455689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
++|+++||||||++||+.+++.+.+.|.+..+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999999998753 7999999999999886 9999999999999999999874
No 232
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-41 Score=368.60 Aligned_cols=221 Identities=28% Similarity=0.471 Sum_probs=184.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC--C---CccEEEECCeecCCC--C
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA--P---LGGEIILDGVSIDKL--Q 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~--~---~~G~i~~~g~~~~~~--~ 431 (1133)
+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56899999999974 349999999999999999999999999999999999986 4 689999999998643 3
Q ss_pred HHHHhhhceEEecCCCCcc-ccHHHHHhcCCC--C-CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 432 LKWLRSQMGLVSQEPALFA-TSIKENILFGKE--D-ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~~--~-~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
...+|++++|+||++.+|. .|++||+.++.. . .+. +++.++++..++.+.+. ......+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHH
Confidence 4567888999999999997 599999987421 1 111 23444555555433222 1223456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
||||++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778999999999999865 9999999999999999999
Q ss_pred hhccccc
Q 041277 583 ELIQAES 589 (1133)
Q Consensus 583 ~l~~~~~ 589 (1133)
++.....
T Consensus 233 ~~~~~~~ 239 (252)
T PRK14256 233 KIFTTPE 239 (252)
T ss_pred HHHhCCC
Confidence 9875433
No 233
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-41 Score=371.48 Aligned_cols=217 Identities=29% Similarity=0.493 Sum_probs=181.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCCCC--HH
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDKLQ--LK 433 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~~~--~~ 433 (1133)
-+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999964 358999999999999999999999999999999999986 47999999999886543 33
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCC--CC--C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKE--DA--S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
.+|+.++|+||++.+|+.|++||+.++.. .. . .+++.++++..++.+.+ .+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 56788999999999998999999987521 11 1 12334445554443221 1233455678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
.+.
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 764
No 234
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.9e-41 Score=379.05 Aligned_cols=212 Identities=27% Similarity=0.469 Sum_probs=178.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999974 3489999999999999999999999999999999999999999999999998654 34568889
Q ss_pred eEEecCCCCcc-ccHHHHHhcCCC--CCCHHH----HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFA-TSIKENILFGKE--DASMEE----VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~-~ti~eni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
||+||++.++. .|++||+.+... ..+.++ +.++++..++.+ . ......+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-------~----~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------K----ADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------H----hcCchhhCCHHHHHHHHHHH
Confidence 99999999885 599999975211 122222 222333333322 2 23334589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+.+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999874 58999999999999875 99999999999999999998864
No 235
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.5e-41 Score=361.61 Aligned_cols=201 Identities=32% Similarity=0.525 Sum_probs=172.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 437 (1133)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 23599999999999999999999999999999999999999999999999999876543 4678
Q ss_pred hceEEecCCCCcc-ccHHHHHhcCCC--CC----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFA-TSIKENILFGKE--DA----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~-~ti~eni~~~~~--~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
.++|++|++.+|. .|++||+.++.. .. ..+++.++++..++.+...+.| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 8999999999986 599999987521 11 1234556666666655544433 4899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
||||+.+|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999874 58999999999999876 99999999985
No 236
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-41 Score=367.89 Aligned_cols=217 Identities=28% Similarity=0.494 Sum_probs=183.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC-----ccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-----GGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~-----~G~i~~~g~~~~~~--~~ 432 (1133)
.|+++|++|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999974 34999999999999999999999999999999999999997 69999999998643 34
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC--CC-H----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED--AS-M----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~~-~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+|+.++||+|++.+|+.|++||+.++... .. . +.+.++++..++.+.+ .+.....+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHH
Confidence 5678899999999999988999999876321 11 1 2233333444433222 2334566789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999887678999999999999876 899999999999999999988
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 234 ~~ 235 (251)
T PRK14249 234 FS 235 (251)
T ss_pred Hh
Confidence 65
No 237
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-41 Score=370.85 Aligned_cols=215 Identities=34% Similarity=0.506 Sum_probs=184.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999753 23589999999999999999999999999999999999999999999999999888877888899
Q ss_pred eEEecCCC-Cc-cccHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEPA-LF-ATSIKENILFGKED--ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~~-l~-~~ti~eni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+|++|+|. +| ..|+++|+.++... ... +++.++++..++.++. ...+.+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence 99999985 44 55899999886321 122 2334445555444333 234568999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||++.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999998874 3789999999999887899999999999999999998865
No 238
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-41 Score=371.33 Aligned_cols=214 Identities=26% Similarity=0.410 Sum_probs=185.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 36899999999974 349999999999999999999999999999999999999999999999999988887778889
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCC-CC------C---CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 439 MGLVSQEPALFA-TSIKENILFGK-ED------A---SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 439 i~~v~Q~~~l~~-~ti~eni~~~~-~~------~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
++|+||++.+|. .|++||+.++. +. . ..+++.++++..++.++.. ..+.+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHHH
Confidence 999999998875 59999998752 11 0 1224555666666654433 3446899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
++||||++++|+++||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998874 37899999999998865 999999999999999999887
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 65
No 239
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.5e-41 Score=360.79 Aligned_cols=201 Identities=40% Similarity=0.639 Sum_probs=170.4
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999752 1358999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EecCCC--CccccHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 442 VSQEPA--LFATSIKENILFGKED--ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 442 v~Q~~~--l~~~ti~eni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
++|++. ++..|++||+.++... ... +++.+.++..++.++++ ....+||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHH
Confidence 999984 5678999999875321 121 23344455555444333 3446899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
|+++|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998875 48999999999999987 99999999985
No 240
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.1e-41 Score=369.61 Aligned_cols=215 Identities=28% Similarity=0.482 Sum_probs=181.1
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC--------
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL-------- 430 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~-------- 430 (1133)
+.++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999974 3489999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHHhhhceEEecCCCCccc-cHHHHHhcCCC---CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCC
Q 041277 431 -----QLKWLRSQMGLVSQEPALFAT-SIKENILFGKE---DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 431 -----~~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 497 (1133)
....++++++|+||++.++.. |++||+.++.. ... .+++.++++..++.+.. .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 134567889999999999975 99999986421 111 12333444444443322 13445
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999999875 48999999999999986 999999999999
Q ss_pred EeecCcchhcc
Q 041277 576 METGSHDELIQ 586 (1133)
Q Consensus 576 ~~~g~~~~l~~ 586 (1133)
++.|+++++..
T Consensus 231 ~~~~~~~~~~~ 241 (257)
T PRK10619 231 EEEGAPEQLFG 241 (257)
T ss_pred EEeCCHHHhhh
Confidence 99999998865
No 241
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-41 Score=375.20 Aligned_cols=218 Identities=30% Similarity=0.491 Sum_probs=180.0
Q ss_pred ccEEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC----C-C
Q 041277 359 GEVEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK----L-Q 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~----~-~ 431 (1133)
+.|+++|++++|+++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997532 1358999999999999999999999999999999999999999999999999852 1 3
Q ss_pred HHHHhhhceEEecCC--CCccccHHHHHhcCCC--CCCHHHH----HHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 432 LKWLRSQMGLVSQEP--ALFATSIKENILFGKE--DASMEEV----IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
...+|++|+|++|+| .+|..|++||+.++.. ....++. .+.++..+ +|.+ .......+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~---~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQ-------LPED---YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CChh---HhcCChhhCCHH
Confidence 456788899999998 4677899999987532 1222222 22222222 2211 234456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998874 38999999999998765 99999999999999999
Q ss_pred cchhcc
Q 041277 581 HDELIQ 586 (1133)
Q Consensus 581 ~~~l~~ 586 (1133)
++++.+
T Consensus 235 ~~~~~~ 240 (289)
T PRK13645 235 PFEIFS 240 (289)
T ss_pred HHHHhc
Confidence 988765
No 242
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=5.2e-41 Score=348.66 Aligned_cols=178 Identities=38% Similarity=0.653 Sum_probs=164.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999753 23589999999999999999999999999999999999999999999999988765 556788899
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++.+|+.|++||+ +.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 357999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
+||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999998764
No 243
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.7e-41 Score=381.01 Aligned_cols=229 Identities=26% Similarity=0.408 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC---ccEEEECCeecCCCCHHHH
Q 041277 360 EVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~---~G~i~~~g~~~~~~~~~~~ 435 (1133)
-++++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996421 245899999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----hhceEEecCC--CCcc-ccHHHHHhcCC---CCCCHHH----HHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 436 R----SQMGLVSQEP--ALFA-TSIKENILFGK---EDASMEE----VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 436 r----~~i~~v~Q~~--~l~~-~ti~eni~~~~---~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
+ ++|+||+|+| .+++ .|+.+|+.... ...+.++ +.+.++.++ ++++. ..++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vg-------L~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVK-------MPEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCChH-HHhcCCcccCC
Confidence 3 4799999998 4554 47888775321 1122222 223333332 33322 23566778999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEee
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMET 578 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 578 (1133)
||||||++|||||+.+|++||+|||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 8999999999999875 999999999999999
Q ss_pred cCcchhccccchhhHHHH
Q 041277 579 GSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~~ 596 (1133)
|+++++.+.....|.+..
T Consensus 244 g~~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGL 261 (330)
T ss_pred CCHHHHHhCCCCHHHHHH
Confidence 999999876666777644
No 244
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.5e-41 Score=362.28 Aligned_cols=198 Identities=26% Similarity=0.475 Sum_probs=167.5
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999974 34899999999999999999999999999999999999999999999998764 46778999
Q ss_pred EecCCCC---ccccHHHHHhcCCCCC----------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 442 VSQEPAL---FATSIKENILFGKEDA----------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 442 v~Q~~~l---~~~ti~eni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++|++.+ ++.|++||+.++.... ..+++.++++..++.++.++ ...+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHH
Confidence 9999876 5579999998754311 12345556666666554443 3458999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
+|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875 68999999999999876 9999999886 55544
No 245
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-41 Score=368.72 Aligned_cols=218 Identities=28% Similarity=0.456 Sum_probs=184.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~~~ 432 (1133)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGSF---LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECCE---EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 48999999999743 48999999999999999999999999999999999986 479999999998853 345
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCCC-----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKEDA-----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
..++++++|++|++.+|+.|++||+.++.... ..+++.++++.+++.+++.. .....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 66788999999999999889999998764211 12234445555555443322 2345667899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEe---------CCeEEe
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQ---------DGQVME 577 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~---------~G~i~~ 577 (1133)
++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777899999999998865 99999998 899999
Q ss_pred ecCcchhccc
Q 041277 578 TGSHDELIQA 587 (1133)
Q Consensus 578 ~g~~~~l~~~ 587 (1133)
.|+++|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999753
No 246
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.6e-41 Score=381.73 Aligned_cols=212 Identities=26% Similarity=0.483 Sum_probs=179.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.+ ...+++|
T Consensus 41 ~i~i~nl~k~y~~~---~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGDK---AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 59999999999743 4999999999999999999999999999999999999999999999999987654 4678899
Q ss_pred eEEecCCCCcc-ccHHHHHhcCCC--CCCHHH----HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFA-TSIKENILFGKE--DASMEE----VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~-~ti~eni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
||+||++.++. .|++||+.+... ..+.++ +.++++..+ +++..++. ..+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~~~~~----~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADAR----VSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchhhCCC----hhhCCHHHHHHHHHHH
Confidence 99999999875 599999985221 122222 222222222 33333333 4589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+++|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++.+
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999875 58999999999999976 99999999999999999999865
No 247
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-41 Score=368.55 Aligned_cols=217 Identities=26% Similarity=0.459 Sum_probs=183.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~--~~ 432 (1133)
.|+++|++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGEK---HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECCe---eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 48999999999743 489999999999999999999999999999999999763 489999999998765 44
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC--C-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED--A-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
...++.++|++|++.+|+.|++||+.++... . . .+++.++++..++.+ ++.+..++.+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHH
Confidence 5677889999999999989999999986321 1 1 122334444443322 222345566779999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999865 999999999999999999988
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 236 ~~ 237 (253)
T PRK14261 236 FE 237 (253)
T ss_pred Hh
Confidence 65
No 248
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=5.3e-41 Score=360.39 Aligned_cols=202 Identities=31% Similarity=0.510 Sum_probs=172.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH---HHHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL---KWLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 437 (1133)
++++|++++|++. +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 348999999999999999999999999999999999999999999999999977654 34678
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
.++|++|++.+|.. |++||+.++.. ... .+++.++++..++.+..... ..+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHH
Confidence 89999999999875 99999987531 111 23345555555655444333 35899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
|||++.+|+++||||||++||+++++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 58999999999999876 999999999974
No 249
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-41 Score=369.99 Aligned_cols=218 Identities=28% Similarity=0.428 Sum_probs=182.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~~~ 432 (1133)
-++++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGED---HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECCc---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 58999999999743 48999999999999999999999999999999999987 699999999999853 345
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCC--CCCHH-----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKE--DASME-----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~~~~-----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..++++++|++|++.+|..|++||+.++.. ....+ .+.++++..++. +++.......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence 567889999999999998899999987531 11111 122223222221 1222334556779999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
...
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 753
No 250
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.9e-41 Score=373.14 Aligned_cols=213 Identities=29% Similarity=0.509 Sum_probs=185.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|+. ++.+|+||||+|++|+++|++||||||||||+++|+|+..|++|+|.++|.+...- ....+++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999983 13499999999999999999999999999999999999999999999999998765 66788999
Q ss_pred eEEecCCCCccc-cHHHHHhcCC-----C-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGK-----E-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
||+||+|.+++. |++||+.|.. + ....+++.+.++..++.+.. ..+..+||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 999999998866 9999998732 2 12245666777777665421 2234589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-C-CeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV-G-RTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~-~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+.+|++|||||||++|||.++..+.+.|+++.+ + +||+++||.++.+.. ||+|++|++|+++..|+.+++..
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999998864 5 799999999999987 99999999999999999888754
No 251
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=366.22 Aligned_cols=217 Identities=29% Similarity=0.484 Sum_probs=183.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecC-CCCHH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSID-KLQLK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~-~~~~~ 433 (1133)
.++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999974 3489999999999999999999999999999999999986 5999999999985 34566
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCCC--CC-H----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKED--AS-M----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~~-~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
.+|+.++|++|++.+|..|++||+.++... .. . +++.++++..++.+.+ .+.....+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHH
Confidence 778899999999999999999999875321 11 1 2233444444443322 22334556789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999876 9999999999999999988875
Q ss_pred c
Q 041277 586 Q 586 (1133)
Q Consensus 586 ~ 586 (1133)
.
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 4
No 252
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=366.76 Aligned_cols=218 Identities=30% Similarity=0.448 Sum_probs=184.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~--~~ 432 (1133)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999974 3489999999999999999999999999999999999875 799999999998653 34
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC--C-CH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED--A-SM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
...++.++|+||++.+|+.|++||+.++... . +. +++.++++.+++.+.+. .........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 4667889999999999999999999875321 1 11 23444555555432221 223445678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++.+|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767999999999999876 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 653
No 253
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-41 Score=374.62 Aligned_cols=216 Identities=30% Similarity=0.525 Sum_probs=180.4
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC----CHHH
Q 041277 361 VEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL----QLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~----~~~~ 434 (1133)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997431 13589999999999999999999999999999999999999999999999998754 3456
Q ss_pred HhhhceEEecCC--CCccccHHHHHhcCCC--CCCHHHH----HHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 435 LRSQMGLVSQEP--ALFATSIKENILFGKE--DASMEEV----IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 435 ~r~~i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
+|+.|+|++|++ .+|+.|++||+.++.. ..+.++. .++++..++.+ ........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 788899999998 5788899999987532 1223222 22233333321 1234456789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|++||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998875 48999999999998865 999999999999999999888
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
.+
T Consensus 233 ~~ 234 (280)
T PRK13649 233 FQ 234 (280)
T ss_pred hc
Confidence 65
No 254
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-41 Score=367.99 Aligned_cols=217 Identities=29% Similarity=0.484 Sum_probs=182.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~--~~ 432 (1133)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4889999999974 3489999999999999999999999999999999999984 899999999988653 33
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC---CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED---AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+++.++|++|++.+|..|++||+.++... .. .+++.++++..++.+.+. ......+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 4567889999999999999999999875311 11 122344455544433221 224456679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++++|+++||||||++||+.++..+.+.|.+..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 999999999999999999988
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
.+
T Consensus 233 ~~ 234 (250)
T PRK14262 233 VE 234 (250)
T ss_pred Hh
Confidence 65
No 255
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=9.8e-41 Score=360.12 Aligned_cols=210 Identities=26% Similarity=0.451 Sum_probs=178.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|+++ ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGDA---KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCCc---eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 48999999999743 499999999999999999999999999999999999999999999999999888877788899
Q ss_pred eEEecCCCCccccHHHHHhcCCC---CC-CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 440 GLVSQEPALFATSIKENILFGKE---DA-SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 440 ~~v~Q~~~l~~~ti~eni~~~~~---~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
+|++|++.+|+.|++||+.++.. .. ..+++.+.++..++. ++.....+.+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999999998899999986421 11 122233333333331 12345566799999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEe-CCeEEeecCcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQ-DGQVMETGSHD 582 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~-~G~i~~~g~~~ 582 (1133)
++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999999874 3789999999999988899999994 67777888885
No 256
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=8.4e-41 Score=368.30 Aligned_cols=212 Identities=25% Similarity=0.428 Sum_probs=182.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999974 35999999999999999999999999999999999999999999999999998888777888899
Q ss_pred EEecCCCC-ccccHHHHHhcCCCCC----------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 441 LVSQEPAL-FATSIKENILFGKEDA----------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 441 ~v~Q~~~l-~~~ti~eni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
|++|++.+ +..|++||+.++.... ..+++.++++..++.+. ....+.+||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHH
Confidence 99999865 4579999998763110 11234444555544333 23345689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||||++.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999999875 47899999999999965 99999999999999999988765
No 257
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=5.7e-41 Score=376.98 Aligned_cols=211 Identities=20% Similarity=0.398 Sum_probs=181.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+++++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999974 359999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|+||++.++.. |++||+.+... ... .+++.++++..+ ++........+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVG-----------LRPEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------CchHhcCchhhCCHHHHHHHHHHHH
Confidence 99999999876 99999976321 111 123333333333 3333445567899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|+++|++|||||||++||+.+.+.+++.++++.+++|+|++||+++.+.. ||||++|++|+++..|+++++.+
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999988778999999999998876 99999999999999999999865
No 258
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=378.75 Aligned_cols=228 Identities=21% Similarity=0.322 Sum_probs=185.6
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC----CCccEEEECCeecCCCCHHHH
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA----PLGGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~----~~~G~i~~~g~~~~~~~~~~~ 435 (1133)
|+++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.+++...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 78999999996421 2458999999999999999999999999999999999986 589999999999988876654
Q ss_pred h----hhceEEecCCCC--cc-ccHHHHHhcCCC----------C--CCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 436 R----SQMGLVSQEPAL--FA-TSIKENILFGKE----------D--ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 436 r----~~i~~v~Q~~~l--~~-~ti~eni~~~~~----------~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
+ +.|+||+|+|.. ++ .||.+|+..... . ...+++.++++..++.+.. ......
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhCC
Confidence 3 479999999963 33 489999864210 0 0123455556666554211 112334
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCC
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDG 573 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G 573 (1133)
+.+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 468999999999999999999999999999999999999999999998753 8999999999999976 9999999999
Q ss_pred eEEeecCcchhccccchhhHHHH
Q 041277 574 QVMETGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 574 ~i~~~g~~~~l~~~~~~~~~~~~ 596 (1133)
+|++.|+.+++.+.....|.+.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHHHH
Confidence 99999999999865556676543
No 259
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-40 Score=356.57 Aligned_cols=201 Identities=27% Similarity=0.492 Sum_probs=173.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4789999999642 2 39999999999999999999999999999999999999999999999876654 357899
Q ss_pred EEecCCCCccc-cHHHHHhcCCC-C-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE-D-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~-~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+|.. |++||+.++.. . ...+++.++++..++.+.....| .+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999987642 1 12345666777777766555544 4899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
++.+|+++||||||++||+++++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999874 38999999999999876 9999999999998764
No 260
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-41 Score=365.21 Aligned_cols=217 Identities=26% Similarity=0.451 Sum_probs=182.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH-Hhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW-LRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 438 (1133)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999974 35999999999999999999999999999999999999999999999999998776544 5678
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKE---DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
++|++|++.+|.. |++||+.++.. ..+.++. ...+.+.++.+ |++........+||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999998875 99999987531 1111111 11223344444 344445556679999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+.+|++|||||||++||+.+++.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|++++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998765 48999999999987765 99999999999999999998865
No 261
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.3e-40 Score=360.77 Aligned_cols=208 Identities=29% Similarity=0.386 Sum_probs=176.4
Q ss_pred cEEEEEEEEEcCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---H
Q 041277 360 EVEFKCVQFAYPSRPE-SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---L 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~ 435 (1133)
.|+++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999975321 25899999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hhhceEEecCCCCccc-cHHHHHhcCCC--CC----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 436 -RSQMGLVSQEPALFAT-SIKENILFGKE--DA----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 436 -r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
++.++|++|++.++.. |++||+.++.. .. ..+++.++++..++.+.+.+.| .+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3579999999999875 99999986421 11 1234556666666655554443 5899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
++|||||+.+|+++||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+..||++++|++|+++++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998874 3 7899999999998878999999999999764
No 262
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=367.60 Aligned_cols=220 Identities=24% Similarity=0.424 Sum_probs=182.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 438 (1133)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999974 359999999999999999999999999999999999999999999999999987775554 456
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCC--------------HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDAS--------------MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~--------------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
++|++|++.+|.. |++||+.++..... .....+ ....+.++++.+ |++........+||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE--ALDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhH--HHHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 9999999999986 99999997532100 000000 011122334443 4444556667799999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
||||++||||++.+|++|||||||++||+.+++.+.+.|.++. + ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999999999999999998874 3 7899999999999866 99999999999999999
Q ss_pred cchhcc
Q 041277 581 HDELIQ 586 (1133)
Q Consensus 581 ~~~l~~ 586 (1133)
++++..
T Consensus 238 ~~~~~~ 243 (255)
T PRK11300 238 PEEIRN 243 (255)
T ss_pred HHHHhh
Confidence 888754
No 263
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-41 Score=371.25 Aligned_cols=213 Identities=32% Similarity=0.523 Sum_probs=180.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC--CCHHHHhhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK--LQLKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 438 (1133)
++++|++++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 6899999999632 348999999999999999999999999999999999999999999999999852 234467889
Q ss_pred ceEEecCC--CCccccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 439 MGLVSQEP--ALFATSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 439 i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
|+|++|++ .+|..|++||+.++.. ..+. +++.++++..++.++.+ ..+.+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 99999997 4678899999987532 1122 23445555555543332 2345899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||++.+|+++||||||++||+.++..+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999875 48999999999999875 99999999999999999998865
No 264
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.4e-42 Score=335.19 Aligned_cols=223 Identities=25% Similarity=0.461 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RS 437 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~ 437 (1133)
+.+..+|+.++|..+ +|++++||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|++.++.... |.
T Consensus 3 ~~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 357889999999755 49999999999999999999999999999999999999999999999999999997654 44
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
.|||+||||.+|.+ ||+|||..-.+ ..+.+...+.+...+++.++.+ .+...-...+.+||||||+|+.|||||..
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE-~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLE-IREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHh-hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 69999999999987 99999986432 1111111122222233344443 23444456678999999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcc-hhhcCCEEEEEeCCeEEeecCcchhccc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
+|+.+|||||++++||.+-..|++.++.+. +|--|++.-|+.. ++.-|||.+++.+|+|..+|+++|+.++
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999999876 5888999999986 5667999999999999999999999874
No 265
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.4e-40 Score=358.79 Aligned_cols=204 Identities=27% Similarity=0.450 Sum_probs=172.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 437 (1133)
|+++|++++|+.. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 6899999999422 3589999999999999999999999999999999999999999999999999876543 3678
Q ss_pred hceEEecCCCCc-cccHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALF-ATSIKENILFGKE--DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~-~~ti~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
.++|++|++.++ ..|++||+.++.. ..+.+ ++.++++..++.+...+ ...+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHH
Confidence 899999999875 5699999987531 12222 23444555555444333 346899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEe
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
|||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999874 47899999999999876 99999999999864
No 266
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-41 Score=382.01 Aligned_cols=211 Identities=27% Similarity=0.448 Sum_probs=182.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC----CHHHHh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL----QLKWLR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~----~~~~~r 436 (1133)
|++ |++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +....+
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 566 899999642 23 89999999999999999999999999999999999999999999998653 234457
Q ss_pred hhceEEecCCCCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 437 SQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
++++||+|++.+|+ .|++||+.++.+....+++.+.++..++.++.++.| .+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHH
Confidence 78999999999996 599999998755444556667777776655554443 589999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcccc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999988753 7899999999998865 9999999999999999999998643
No 267
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=367.09 Aligned_cols=218 Identities=31% Similarity=0.453 Sum_probs=184.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCC--CC
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDK--LQ 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~--~~ 431 (1133)
+.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.+ .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 35899999999974 3489999999999999999999999999999999999985 48999999999864 34
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCC---CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKED---AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
...++++++|++|++.+|+.|++||+.++... .. .+.+.++++.+++.+++.. .....+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 45678899999999999999999999875211 11 1234455666665433322 2344567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEe-----CCeEEee
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQ-----DGQVMET 578 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~-----~G~i~~~ 578 (1133)
|||++||||++++|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988777999999999999876 99999998 5999999
Q ss_pred cCcchhcc
Q 041277 579 GSHDELIQ 586 (1133)
Q Consensus 579 g~~~~l~~ 586 (1133)
|+++++.+
T Consensus 236 ~~~~~~~~ 243 (259)
T PRK14260 236 GVTTQIFS 243 (259)
T ss_pred CCHHHHhc
Confidence 99999865
No 268
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.3e-40 Score=356.11 Aligned_cols=210 Identities=28% Similarity=0.435 Sum_probs=185.2
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH----HHHhh
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL----KWLRS 437 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~----~~~r~ 437 (1133)
.+.|++|+|+.+ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999754 358999999999999999999999999999999999999999999999998876542 23567
Q ss_pred hceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 438 QMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
.++|++|++.+|+.|++||+.++.+ ...++..++++..++.+.+..+|.|+++.++....+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 7999999999998899999998653 344556677888888888899999999999999999999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHH--HHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 518 PRILLLDEATSALDSESERVVQE--ALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~--~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
|+++||||||++||+.+...+.+ .++... +++|+|++||+.+.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988887 455443 4789999999999988899999999884
No 269
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-40 Score=367.16 Aligned_cols=218 Identities=27% Similarity=0.457 Sum_probs=184.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCCC-HH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKLQ-LK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~~-~~ 433 (1133)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999974 3589999999999999999999999999999999999986 7999999999987653 34
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCC---CCCHHHHH----HHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKE---DASMEEVI----EAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~---~~~~~~~~----~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
.++++++|++|++.+|+.|++||+.++.. ..+.++.. +.++..++. +.+.+.....+.+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLW-------DAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC-------chhhhHhhCCcccCCHHHHH
Confidence 67889999999999999999999987532 12333332 222333222 22223445667799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
|++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667899999999999875 9999999999999999999987
Q ss_pred cc
Q 041277 586 QA 587 (1133)
Q Consensus 586 ~~ 587 (1133)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 63
No 270
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=8.8e-41 Score=358.41 Aligned_cols=201 Identities=32% Similarity=0.512 Sum_probs=169.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC--CCHHHHhhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK--LQLKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 438 (1133)
++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...++++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECCe---EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 4789999999743 48999999999999999999999999999999999999999999999999853 344567789
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCCC---CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 439 MGLVSQEPALFA-TSIKENILFGKE---DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 439 i~~v~Q~~~l~~-~ti~eni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
++|++|++.+|. .|++||+.++.. ....+ ++.++++..++.+. ......+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADK-----------ADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhhCccccCHHHHHHHHH
Confidence 999999999986 599999987531 12222 23334444444333 334446899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
|||++.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 47999999999999875 999999999974
No 271
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=368.70 Aligned_cols=218 Identities=28% Similarity=0.491 Sum_probs=182.8
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--CC
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--LQ 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~~ 431 (1133)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45899999999974 349999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCC--C---CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKED--A---SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
...++++++|++|++.+|+.|++||+.++... . ..+++.++++..++.+.+. ....+++.+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 55678899999999999988999999874211 1 1234455555554432221 1234556799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEE-EEeCCeEEeecCcchh
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIA-VVQDGQVMETGSHDEL 584 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~-~l~~G~i~~~g~~~~l 584 (1133)
|++|||||+++|+||||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|++++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999988767899999999999876 99975 5799999999999887
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 268 ~~ 269 (285)
T PRK14254 268 FE 269 (285)
T ss_pred Hh
Confidence 64
No 272
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.7e-40 Score=358.74 Aligned_cols=212 Identities=33% Similarity=0.480 Sum_probs=172.3
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH---HHHh
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL---KWLR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~---~~~r 436 (1133)
|+++||+++|+++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997431 1258999999999999999999999999999999999999999999999999987663 5677
Q ss_pred hhceEEecCCC--Cc-cccHHHHHhcCCC----CCCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHHHHH
Q 041277 437 SQMGLVSQEPA--LF-ATSIKENILFGKE----DASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 ~~i~~v~Q~~~--l~-~~ti~eni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri 508 (1133)
++++|++|++. ++ ..|++||+.++.. ....+...++. .+.++.+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 89999999993 44 4699999976421 11111111110 1223333 221 234556678999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
+||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998753 8999999999999874 9999999999998765
No 273
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.7e-40 Score=342.93 Aligned_cols=172 Identities=42% Similarity=0.699 Sum_probs=161.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999743 235899999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++.+|+.|++||+ ||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 521 LLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
+||||||++||+.+++.+.+.++++. +++|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 48999999999998878999999999974
No 274
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=363.28 Aligned_cols=218 Identities=31% Similarity=0.507 Sum_probs=185.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~~--~~ 432 (1133)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999974 349999999999999999999999999999999999864 4899999999998653 35
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCC--CC-CH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKE--DA-SM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..++++++|+||++.+|+.|++||+.++.. .. +. +++.++++.+++.+++..+ ..+.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 567889999999999999999999987532 11 11 2345556666665444321 3445678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998876 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 653
No 275
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-40 Score=359.11 Aligned_cols=208 Identities=31% Similarity=0.506 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++||+++|+.. ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 6899999999632 2499999999999999999999999999999999999999999999998765442 56799
Q ss_pred EEecCCCCccc-cHHHHHhcCCC-C-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE-D-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~-~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+|.. |++||+.++.. . ...+++.++++..++.+.+.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999987531 1 12345677777777777666655 4899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++++|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999874 37899999999999875 99999999999999999988875
No 276
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-40 Score=356.75 Aligned_cols=201 Identities=21% Similarity=0.448 Sum_probs=169.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999974 348999999999999999999999999999999999999999999999988753 4567899
Q ss_pred EEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.++.. |++||+.++.. ... .+++.+.++..++.+ .......+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-----------YANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-----------HHhCcHhhCCHHHHHHHHHHHH
Confidence 99999999875 99999987421 111 122333444444433 3334556899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
++.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999998864 57899999999998865 9999999999998764
No 277
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-40 Score=361.25 Aligned_cols=210 Identities=34% Similarity=0.542 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~~---~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGGF---VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCCe---eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 4689999999743 49999999999999999999999999999999999999999999999999876654 257899
Q ss_pred EEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+|.+ |++||+.++.. ..+ .+++.++++..++.+++...| .+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 99999986531 111 234555666666655555444 5899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++.+|+++||||||++||+.+++.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 9999999999999999999999999999998753 8999999999999865 99999999999999999888765
No 278
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-41 Score=345.26 Aligned_cols=220 Identities=27% Similarity=0.455 Sum_probs=184.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 439 (1133)
++.++++++|++- .+++|+||++++||+++|+|||||||||++|+|.|+|+|++|+|.++|+||..++++.. |..|
T Consensus 5 L~v~~l~k~FGGl---~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGGL---TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCCE---EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 5789999999853 48999999999999999999999999999999999999999999999999999998775 4569
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCC-----------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDA-----------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
+--||.+.+|++ ||.||+..+.... ...+-.++.+.+ .+.++.+ |++....+...+||+|||+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A--~~~Le~v--gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA--RELLEFV--GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHH--HHHHHHc--CCchhhcchhhcCChhHhHH
Confidence 999999999976 9999998863211 000111111111 2233332 44444555567899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
+.|||||+.+|++|+||||.++|.+.....+.+.|+++.+ |.|+++|.||++.+.. ||||+||+.|+++.+|+|+|+
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999999999999999999874 5999999999999876 999999999999999999999
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
.++
T Consensus 238 ~~d 240 (250)
T COG0411 238 RNN 240 (250)
T ss_pred hcC
Confidence 864
No 279
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.6e-40 Score=364.54 Aligned_cols=211 Identities=28% Similarity=0.444 Sum_probs=178.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC---ccEEEECCeecCCC-----C
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVSIDKL-----Q 431 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~---~G~i~~~g~~~~~~-----~ 431 (1133)
-|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999974 34899999999999999999999999999999999999986 49999999998653 2
Q ss_pred HHHHhhhceEEecCCCCccc-cHHHHHhcCCCCC--------------CHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 432 LKWLRSQMGLVSQEPALFAT-SIKENILFGKEDA--------------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
...++++++|+||++.+|.. |++||+.++.... ..+++.++++..++.+.+ ...
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCC
Confidence 34567889999999998874 9999998763210 112344455555554433 334
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCC
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDG 573 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G 573 (1133)
..+||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 56899999999999999999999999999999999999999999999875 37999999999998755 9999999999
Q ss_pred eEEeecCcchh
Q 041277 574 QVMETGSHDEL 584 (1133)
Q Consensus 574 ~i~~~g~~~~l 584 (1133)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999986
No 280
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.1e-40 Score=359.16 Aligned_cols=210 Identities=33% Similarity=0.486 Sum_probs=179.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGSF---QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECCe---eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 4789999999743 49999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEecCCCCccc-cHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|+||++.+|++ |++||+.++.+. .+ .+++.++++..++.++.+ ....+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999975 999999875421 11 223344444444433333 3346899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++++|+++||||||++||+++++.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999998653 7999999999998866 99999999999999999999865
No 281
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=369.21 Aligned_cols=219 Identities=27% Similarity=0.414 Sum_probs=182.1
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCCC--C
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDKL--Q 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~~--~ 431 (1133)
..|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +
T Consensus 38 ~~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGEF---EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 458999999999743 48999999999999999999999999999999999864 4999999999998643 2
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKE--DA-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
...+|++++|++|++.+|+.|++||+.++.. .. . .+++.++++..++.+.+ .......+..|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHH
Confidence 3456788999999999998899999997532 11 1 12233444444432111 112344567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999875 99999999999999999999
Q ss_pred hccc
Q 041277 584 LIQA 587 (1133)
Q Consensus 584 l~~~ 587 (1133)
+.+.
T Consensus 268 ~~~~ 271 (286)
T PRK14275 268 LFTN 271 (286)
T ss_pred HHhC
Confidence 8753
No 282
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=365.49 Aligned_cols=217 Identities=30% Similarity=0.482 Sum_probs=181.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~--~~~ 432 (1133)
.++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGSF---HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECCE---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 48999999999743 489999999999999999999999999999999999974 69999999999853 345
Q ss_pred HHHhhhceEEecCCCCcc-ccHHHHHhcCCC--C-CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 433 KWLRSQMGLVSQEPALFA-TSIKENILFGKE--D-ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~~--~-~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
..+|+.++|++|++.+|. .|++||+.++.. . ... +.+.++++..++.+.+ .........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHH
Confidence 567888999999999987 499999986431 1 111 2334444444443222 122344567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEe------CCeEEe
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQ------DGQVME 577 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~------~G~i~~ 577 (1133)
|||++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999988777999999999999865 99999997 899999
Q ss_pred ecCcchhcc
Q 041277 578 TGSHDELIQ 586 (1133)
Q Consensus 578 ~g~~~~l~~ 586 (1133)
.|+++++..
T Consensus 234 ~~~~~~~~~ 242 (258)
T PRK14241 234 IDDTEKIFS 242 (258)
T ss_pred cCCHHHHHh
Confidence 999998865
No 283
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-40 Score=363.51 Aligned_cols=218 Identities=29% Similarity=0.428 Sum_probs=186.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~--~~ 432 (1133)
.+.+++++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 5789999999964 3589999999999999999999999999999999999987 799999999998643 33
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
..+++.++|++|++.+|..|++||+.++... ...+++.++++..++.+.+.. ..++.+.+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 4567889999999999989999999876321 112355666666665443322 2345667899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEe--------CCeEEee
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQ--------DGQVMET 578 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~--------~G~i~~~ 578 (1133)
++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999988778999999999998865 99999996 8999999
Q ss_pred cCcchhccc
Q 041277 579 GSHDELIQA 587 (1133)
Q Consensus 579 g~~~~l~~~ 587 (1133)
|+++++.+.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999998753
No 284
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-40 Score=363.97 Aligned_cols=219 Identities=29% Similarity=0.457 Sum_probs=180.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC-----ccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-----GGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~-----~G~i~~~g~~~~~--~~~ 432 (1133)
-++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999974 35999999999999999999999999999999999999874 8999999999865 334
Q ss_pred HHHhhhceEEecCCCCccc-cHHHHHhcCCC--CC-CHHHHHHH----HHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 433 KWLRSQMGLVSQEPALFAT-SIKENILFGKE--DA-SMEEVIEA----AKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~-~~~~~~~~----~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
..+|+.++|++|++.+|.. |++||+.++.. .. ..++..+. ++..++.+.+ ++. ......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~----~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDR----LKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhh----hcCCcccCCHHH
Confidence 5678889999999999875 99999986432 11 22222222 2222222111 122 233456899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|||++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999876 99999999999999999999
Q ss_pred hcccc
Q 041277 584 LIQAE 588 (1133)
Q Consensus 584 l~~~~ 588 (1133)
++..+
T Consensus 234 ~~~~~ 238 (252)
T PRK14272 234 LFTNP 238 (252)
T ss_pred HHhCc
Confidence 87643
No 285
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-40 Score=363.17 Aligned_cols=212 Identities=27% Similarity=0.420 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC--------ccEEEECCeecCCCCH
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL--------GGEIILDGVSIDKLQL 432 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~--------~G~i~~~g~~~~~~~~ 432 (1133)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRHR---AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECCE---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 6899999999643 4999999999999999999999999999999999999998 9999999999988777
Q ss_pred HHHhhhceEEecCCC-CccccHHHHHhcCCCCC-------C---HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 433 KWLRSQMGLVSQEPA-LFATSIKENILFGKEDA-------S---MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~-l~~~ti~eni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
..+++.++|++|++. +|..|++||+.++.... . .+.+.++++..+ +++..+....+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG-----------ATALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcC-----------cHhhhcCCcccCC
Confidence 778888999999986 46789999998753110 1 112333333333 4444555667999
Q ss_pred hHHHHHHHHHHHHh---------hCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEE
Q 041277 502 GGQKQRIAIARAII---------KAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAV 569 (1133)
Q Consensus 502 gGqkqri~iARal~---------~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~ 569 (1133)
||||||++|||||+ .+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998753 7999999999999865 999999
Q ss_pred EeCCeEEeecCcchhcc
Q 041277 570 VQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 570 l~~G~i~~~g~~~~l~~ 586 (1133)
|++|++++.|+++++.+
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999998865
No 286
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.9e-40 Score=364.58 Aligned_cols=227 Identities=24% Similarity=0.413 Sum_probs=185.1
Q ss_pred cEEEEEEEEEcCCC------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH
Q 041277 360 EVEFKCVQFAYPSR------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~ 433 (1133)
-|+++||+++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999632 123599999999999999999999999999999999999999999999999998765555
Q ss_pred HHhhhceEEecCCC--Cccc-cHHHHHhcCCC---CCC----HHHHHHHHHHhchH-HHHHhCCCcccccccCCCCCCCh
Q 041277 434 WLRSQMGLVSQEPA--LFAT-SIKENILFGKE---DAS----MEEVIEAAKASNAH-NFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~--l~~~-ti~eni~~~~~---~~~----~~~~~~~~~~~~~~-~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
..+++++|+||++. +++. |+.+|+.++.. ... .+++.++++..++. +... ....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-----------YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-----------cCchhcCH
Confidence 56678999999985 4443 89999875311 111 23455556666652 2222 23358999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999874 38899999999999986 9999999999999999
Q ss_pred Ccchhcccc-chhhHHHHH
Q 041277 580 SHDELIQAE-SGLYTSLVR 597 (1133)
Q Consensus 580 ~~~~l~~~~-~~~~~~~~~ 597 (1133)
+++++...+ ...++.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 233 STADVLASPLHELTKRLIA 251 (267)
T ss_pred CHHHHhcCCCCHHHHHHHH
Confidence 999987632 234455554
No 287
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-40 Score=365.15 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=184.9
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecC----
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSID---- 428 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~---- 428 (1133)
.+.|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~~---~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY---QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECCe---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 4569999999999743 499999999999999999999999999999999999875 7999999998774
Q ss_pred CCCHHHHhhhceEEecCCCCccccHHHHHhcCCC--CC-----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 429 KLQLKWLRSQMGLVSQEPALFATSIKENILFGKE--DA-----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 429 ~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
..+...+++.++|++|++.+|..|++||+.++.. .. ..+++.++++.+++.+. +.+..+....+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE-------VKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh-------hhHHHhCCcccCC
Confidence 2334567888999999999998999999987531 11 12344455555544322 2233455667999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
||||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988777899999999999865 99999999999999999
Q ss_pred cchhcc
Q 041277 581 HDELIQ 586 (1133)
Q Consensus 581 ~~~l~~ 586 (1133)
++++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 998864
No 288
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.5e-40 Score=379.29 Aligned_cols=229 Identities=31% Similarity=0.460 Sum_probs=190.3
Q ss_pred ccEEEEEEEEEcCCC--------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCee--cC
Q 041277 359 GEVEFKCVQFAYPSR--------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS--ID 428 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~--------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~--~~ 428 (1133)
.-++++|+++.|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.+ ++
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 357899999999742 13468999999999999999999999999999999999999999999999987 22
Q ss_pred CCCHHHHhhhceEEecCCCC--c-cccHHHHHhcCCC----C---CCHHHHHHHHHHhchHH-HHHhCCCcccccccCCC
Q 041277 429 KLQLKWLRSQMGLVSQEPAL--F-ATSIKENILFGKE----D---ASMEEVIEAAKASNAHN-FIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 429 ~~~~~~~r~~i~~v~Q~~~l--~-~~ti~eni~~~~~----~---~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g 497 (1133)
.-+...+|+++-+|+|||+- - ..||+++|.-... . ...+.+.+.++.+++.. ++.+ .+
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~r-----------yP 427 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR-----------YP 427 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhc-----------Cc
Confidence 22345677899999999964 3 3599999874321 1 11223555566666554 3444 44
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
.+|||||||||||||||+.+|+++++|||||+||+.++..+.+.|+++.+ |.|.|+||||++.++. ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 68999999999999999999999999999999999999999999998753 8999999999999998 99999999999
Q ss_pred EEeecCcchhccccchhhHHHHHh
Q 041277 575 VMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 575 i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
|+|.|+.+++.+.+...|.+....
T Consensus 508 iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 508 IVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred EEEeCCHHHHhcCCCChHHHHHHH
Confidence 999999999998778888876543
No 289
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-40 Score=353.79 Aligned_cols=230 Identities=27% Similarity=0.453 Sum_probs=186.3
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-C----CccEEEECCeecCCCCHHH
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-P----LGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-~----~~G~i~~~g~~~~~~~~~~ 434 (1133)
++++|++.+|.... ...+++||||++++||++||||.|||||||+.+.|+|+++ | .+|+|.++|.|+..++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997532 2468999999999999999999999999999999999998 4 5799999999999998775
Q ss_pred H---h-hhceEEecCCCC-cc--ccHH----HHHhcCCCC----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 435 L---R-SQMGLVSQEPAL-FA--TSIK----ENILFGKED----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 435 ~---r-~~i~~v~Q~~~l-~~--~ti~----eni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
+ | +.|++|||||.- ++ .||. |-+...... ...+++.+.++.+++.+- +..+...+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 4 3 469999999842 22 1444 444432111 113356666666666431 1122333469
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEE
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 576 (1133)
||||||||+.||-||+.+|++||.||||+|||..++++|.+.|+++. .|.|+|+||||+..+.. ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999999876 48999999999999876 9999999999999
Q ss_pred eecCcchhccccchhhHHHHHh
Q 041277 577 ETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
|.|+.+++.+++...|.+..-.
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHH
Confidence 9999999998888888775543
No 290
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.5e-40 Score=362.48 Aligned_cols=212 Identities=23% Similarity=0.316 Sum_probs=173.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc--CCCccEEEECCeecCCCCHHHH-hh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY--APLGGEIILDGVSIDKLQLKWL-RS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~--~~~~G~i~~~g~~~~~~~~~~~-r~ 437 (1133)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999974 35899999999999999999999999999999999994 7999999999999988776554 44
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCCC---------CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCC-CCCh
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKED---------ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGV-QMSG 502 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~~---------~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~-~LSg 502 (1133)
.++|++|++.+|++ |++||+.+.... .+. +++.++++..++.+ . ....... +|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~---~~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE-------E---FLNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch-------h---hcccccccCcCH
Confidence 59999999999876 899999764210 011 12233333333321 1 1122233 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc--CCEEEEEeCCeEEeec
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN--ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g 579 (1133)
|||||++|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999875 47999999999999875 7999999999999999
Q ss_pred Ccchhc
Q 041277 580 SHDELI 585 (1133)
Q Consensus 580 ~~~~l~ 585 (1133)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 987653
No 291
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=363.57 Aligned_cols=219 Identities=27% Similarity=0.460 Sum_probs=184.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC-----ccEEEECCeecCC--CC
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-----GGEIILDGVSIDK--LQ 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~-----~G~i~~~g~~~~~--~~ 431 (1133)
+.|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+
T Consensus 6 ~~l~~~nl~~~~~~~---~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCCe---eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 368999999999643 4899999999999999999999999999999999999985 8999999999853 34
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKE--DA-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
...+|+.++|++|++.+|+.|++||+.++.. .. + .+++.++++..++.+++. ...++.+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 4567888999999999999999999986421 11 1 123444555555443332 22345667999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeC-----CeEE
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD-----GQVM 576 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~-----G~i~ 576 (1133)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998863 48999999999999875 999999999 9999
Q ss_pred eecCcchhccc
Q 041277 577 ETGSHDELIQA 587 (1133)
Q Consensus 577 ~~g~~~~l~~~ 587 (1133)
+.|+++++.+.
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998753
No 292
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.8e-40 Score=362.69 Aligned_cols=226 Identities=27% Similarity=0.415 Sum_probs=182.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCee-----cCCCCHHH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS-----IDKLQLKW 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~-----~~~~~~~~ 434 (1133)
-++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGPR---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCCc---eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 48999999999743 48999999999999999999999999999999999999999999999998 77665543
Q ss_pred ----HhhhceEEecCCC--Ccc-ccHHHHHhcCC---CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 435 ----LRSQMGLVSQEPA--LFA-TSIKENILFGK---EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 435 ----~r~~i~~v~Q~~~--l~~-~ti~eni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
.++.++|++|++. ++. .|+.+|+.+.. ......+..+ .+.++++.++-+ ++.....+.+|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3557999999984 343 48899986421 1111122211 123455555321 134566778999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
|||++||||++.+|++|||||||++||+.+++.+.+.|+++.+ |.|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988643 7899999999999975 999999999999999999
Q ss_pred chhccccchhhHH
Q 041277 582 DELIQAESGLYTS 594 (1133)
Q Consensus 582 ~~l~~~~~~~~~~ 594 (1133)
+++..++...|.+
T Consensus 237 ~~~~~~~~~~~~~ 249 (258)
T PRK11701 237 DQVLDDPQHPYTQ 249 (258)
T ss_pred HHHhcCCCCHHHH
Confidence 9987543333443
No 293
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-40 Score=362.75 Aligned_cols=219 Identities=32% Similarity=0.466 Sum_probs=184.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCC--CC
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDK--LQ 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~--~~ 431 (1133)
..|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.+ .+
T Consensus 19 ~~l~~~nl~~~~~~~---~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGGF---LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCCe---EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 369999999999743 489999999999999999999999999999999999863 69999999999864 23
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCCC-----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKEDA-----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
...+|++|+|++|++.+|+.|++||+.++.... ..+++.++++.+++.+.+. ......+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHH
Confidence 446678999999999999889999998753211 1223444555555543332 1234456789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEe---------CCeEE
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQ---------DGQVM 576 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~---------~G~i~ 576 (1133)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999988778999999999999865 99999998 89999
Q ss_pred eecCcchhccc
Q 041277 577 ETGSHDELIQA 587 (1133)
Q Consensus 577 ~~g~~~~l~~~ 587 (1133)
+.|+++++...
T Consensus 249 ~~g~~~~~~~~ 259 (274)
T PRK14265 249 EFSPTEQMFGS 259 (274)
T ss_pred EeCCHHHHHhC
Confidence 99999998753
No 294
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.9e-40 Score=373.21 Aligned_cols=198 Identities=23% Similarity=0.400 Sum_probs=169.9
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKE 455 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~e 455 (1133)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++||+||++.++.. |++|
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 58999999999999999999999999999999999999999999999999875 345678889999999999876 9999
Q ss_pred HHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccC
Q 041277 456 NILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529 (1133)
Q Consensus 456 ni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~ 529 (1133)
|+.+... ..+ .+++.++++..++.+. ......+||||||||++|||||+++|++|||||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9987421 111 1234444555444332 2334468999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 530 LDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 530 lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999999875 58999999999999876 99999999999999999998865
No 295
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.8e-40 Score=352.00 Aligned_cols=202 Identities=33% Similarity=0.545 Sum_probs=175.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 468999999999999999999999999999999999999999999999987543 3567899
Q ss_pred EEecCCCCccc-cHHHHHhcCC-CC-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGK-ED-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~-~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
||+|+|.+|.. |++||+.++. +. ...+++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999875 9999998642 11 12345666777777766665555 4899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
++.+|+++||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999875 37899999999998865 99999999999998874
No 296
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=319.44 Aligned_cols=215 Identities=28% Similarity=0.457 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC---------
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL--------- 430 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~--------- 430 (1133)
.++++|++++|+.. .||++|||+.++|+.+.|+|.|||||||+++||.=+-.|+.|.|.++|..++-.
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58899999999854 399999999999999999999999999999999999999999999999987522
Q ss_pred -C---HHHHhhhceEEecCCCCcc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCC
Q 041277 431 -Q---LKWLRSQMGLVSQEPALFA-TSIKENILFGKE---DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 431 -~---~~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 498 (1133)
+ ...+|.+.|+|+|+..|++ .|+.||+.-+.- ..+. ++.+..+.++++.+--+.. +.
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----------P~ 151 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAY-----------PA 151 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcC-----------cc
Confidence 2 3457889999999999986 599999874311 1122 2233344555555544444 46
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEE
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 576 (1133)
.|||||+||++|||||..+|+++++|||||||||+---++.+.++++. +|+|.++|||.+.+.++ +.++++|++|+|-
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 899999999999999999999999999999999999999999998875 69999999999999998 8999999999999
Q ss_pred eecCcchhcccc
Q 041277 577 ETGSHDELIQAE 588 (1133)
Q Consensus 577 ~~g~~~~l~~~~ 588 (1133)
|+|+|+++..++
T Consensus 232 E~G~P~qvf~nP 243 (256)
T COG4598 232 EEGPPEQVFGNP 243 (256)
T ss_pred ccCChHHHhcCC
Confidence 999999998654
No 297
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-40 Score=361.50 Aligned_cols=226 Identities=27% Similarity=0.443 Sum_probs=185.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC------eecCCCCH
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG------VSIDKLQL 432 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g------~~~~~~~~ 432 (1133)
..++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +++.+.+.
T Consensus 9 ~~i~~~~~~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYINDK---AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCCc---eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 358999999999753 489999999999999999999999999999999999999997666655 66666666
Q ss_pred HHHhhhceEEecCCCCccc-cHHHHHhcCCC--CC-CHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 433 KWLRSQMGLVSQEPALFAT-SIKENILFGKE--DA-SME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
..+|++++|++|++.+|.+ |++||+.++.. .. ..+ ++.++++..++++++ .....+.+..|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHH
Confidence 7788899999999999875 99999997532 11 122 233444444443211 122344567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|||++||||++.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999988777999999999999854 99999999999999999999
Q ss_pred hccccchhhHH
Q 041277 584 LIQAESGLYTS 594 (1133)
Q Consensus 584 l~~~~~~~~~~ 594 (1133)
+.+.+...|.+
T Consensus 239 ~~~~~~~~~~~ 249 (257)
T PRK14246 239 IFTSPKNELTE 249 (257)
T ss_pred HHhCCCcHHHH
Confidence 87644433443
No 298
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-40 Score=361.37 Aligned_cols=217 Identities=30% Similarity=0.434 Sum_probs=180.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC--C---CccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA--P---LGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~--~---~~G~i~~~g~~~~~--~~~ 432 (1133)
.|+++||+++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999974 358999999999999999999999999999999999975 5 59999999999864 234
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCC--CC-CH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKE--DA-SM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+++.++|++|++.+|+.|++||+.++.. .. .. +++.++++.+++.+. ..........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------VKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-------hhhHHhcCcccCCHHHH
Confidence 566788999999999998999999987521 11 11 223333444433221 12233455678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+..++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999865 999999999999999998888
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 235 ~~ 236 (252)
T PRK14255 235 FL 236 (252)
T ss_pred hc
Confidence 65
No 299
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-40 Score=355.38 Aligned_cols=209 Identities=29% Similarity=0.524 Sum_probs=180.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 468999999963 27999999999999999999999999999999999999999999999999876554 267899
Q ss_pred EEecCCCCcc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFA-TSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+|. .|++||+.++... .+ .+++.++++..++.+++.+. ..+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK-----------PETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcC-----------cccCCHHHHHHHHHHHH
Confidence 9999999985 6999999875321 11 23345556666665554443 35899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++++|++++|||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999998643 8999999999999875 99999999999999999988865
No 300
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=367.10 Aligned_cols=218 Identities=27% Similarity=0.477 Sum_probs=183.7
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCCC--C
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDKL--Q 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~~--~ 431 (1133)
..|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~~---~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGDD---HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCCe---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 358999999999753 48999999999999999999999999999999999986 6899999999998643 3
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCCC-------------------CHHHHHHHHHHhchHHHHHhCCCccccc
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKEDA-------------------SMEEVIEAAKASNAHNFIRQLPQQYDTQ 492 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~-------------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 492 (1133)
...+|++++|++|++.+|+.|++||+.++.... ..+++.++++.+++ ++++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL-------WDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC-------chhhhHH
Confidence 556788999999999999999999999763210 01223333333333 2233445
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEE-EEE
Q 041277 493 VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVI-AVV 570 (1133)
Q Consensus 493 ~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i-~~l 570 (1133)
....+.+||||||||++|||||+++|+||||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 56677899999999999999999999999999999999999999999999988777999999999999865 9997 578
Q ss_pred eCCeEEeecCcchhcc
Q 041277 571 QDGQVMETGSHDELIQ 586 (1133)
Q Consensus 571 ~~G~i~~~g~~~~l~~ 586 (1133)
++|++++.|+++++.+
T Consensus 274 ~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 274 TGGELVEYDDTDKIFE 289 (305)
T ss_pred cCCEEEEeCCHHHHHh
Confidence 9999999999998865
No 301
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-40 Score=359.27 Aligned_cols=203 Identities=28% Similarity=0.434 Sum_probs=171.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999974 3489999999999999999999999999999999999999999999999988642 23589
Q ss_pred EEecCCCCcc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFA-TSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+|+ .|++||+.++.. .... +++.+.++..++.+.. ...+.+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHH
Confidence 9999999887 599999987531 1111 2344445555444333 33456899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEe--CCeEEeecCcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQ--DGQVMETGSHD 582 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~~ 582 (1133)
|+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999999863 48999999999999865 99999998 59999887653
No 302
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5.5e-40 Score=376.42 Aligned_cols=209 Identities=30% Similarity=0.462 Sum_probs=176.4
Q ss_pred EEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC----HHHHhhhce
Q 041277 365 CVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ----LKWLRSQMG 440 (1133)
Q Consensus 365 ~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~----~~~~r~~i~ 440 (1133)
|++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....+++++
T Consensus 4 ~l~~~~~~~----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 789999642 24 999999999999999999999999999999999999999999999986532 235677899
Q ss_pred EEecCCCCccc-cHHHHHhcCCCCCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 441 LVSQEPALFAT-SIKENILFGKEDASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
|++|++.+|.. |++||+.++...... +++.+.++..++.+. ......+||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHL-----------LGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999975 999999987432211 224444555544443 34445689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 99999999999999999999999999998753 7999999999999865 99999999999999999999876433
No 303
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=8e-40 Score=353.72 Aligned_cols=214 Identities=23% Similarity=0.377 Sum_probs=169.7
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC---CCccEEEECCeecCCCCHHHHh
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA---PLGGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~---~~~G~i~~~g~~~~~~~~~~~r 436 (1133)
+.++||+++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997542 3569999999999999999999999999999999999999 99999999999875 24567
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHH-HHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHN-FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
++++|++|++.+|+. |++||+.++..........+..+....++ .++.+ ++.........+||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999987 99999987521100000000000000111 22221 222233445678999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCc-chhh-cCCEEEEEeCCeEEeec
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRL-STIR-NADVIAVVQDGQVMETG 579 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~-~~~~-~~d~i~~l~~G~i~~~g 579 (1133)
+++|+++||||||++||+.++..+.+.+.+.. +++|+|++||++ +.+. .||++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 478999999998 4554 59999999999999875
No 304
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.3e-39 Score=351.41 Aligned_cols=205 Identities=27% Similarity=0.443 Sum_probs=176.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999974 35899999999999999999999999999999999999999999999999875322 24799
Q ss_pred EEecCCCCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 441 LVSQEPALFA-TSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
|+||++.+|. .|++||+.++.. ....+++.++++..++.+..+. ...+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 599999986421 2235566667777766654443 2358999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999875 48899999999999865 99999999999999998765
No 305
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-39 Score=320.62 Aligned_cols=212 Identities=25% Similarity=0.444 Sum_probs=185.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+.+|++++-.++ .+|+++||++++||.+||+||||+|||||++.|+|.+.|++|++.++|.++.+++..++.++-+
T Consensus 2 i~a~nls~~~~Gr---~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeecc---eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 6789999988654 3899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC-ccccHHHHHhcCCCCC------CHHH--HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 441 LVSQEPAL-FATSIKENILFGKEDA------SMEE--VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 441 ~v~Q~~~l-~~~ti~eni~~~~~~~------~~~~--~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+.||+..+ |+-|++|-+.+|.-.. .+++ ..+++..+++..+-.+. -..||||||||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHH
Confidence 99999887 8999999999986311 1222 45566666665554332 247999999999999
Q ss_pred HHHhh------CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcch
Q 041277 512 RAIIK------APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 512 Ral~~------~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|.|.+ ++++|+||||||+||...++.+++..+++. +|..|+.|-||++... .||||++|++||++..|++++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99986 446899999999999999999999998875 5889999999999865 599999999999999999999
Q ss_pred hcc
Q 041277 584 LIQ 586 (1133)
Q Consensus 584 l~~ 586 (1133)
.+.
T Consensus 228 vlt 230 (259)
T COG4559 228 VLT 230 (259)
T ss_pred hcC
Confidence 987
No 306
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-40 Score=311.21 Aligned_cols=191 Identities=30% Similarity=0.538 Sum_probs=167.0
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHH
Q 041277 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIK 454 (1133)
Q Consensus 375 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 454 (1133)
+.++|+++||++.+||+++|.||||||||||++.++-+.+|++|++++.|++++.++++.+|++|+||.|.|.||.+||+
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC----CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCC
Q 041277 455 ENILFGKE----DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL 530 (1133)
Q Consensus 455 eni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~l 530 (1133)
||+.|... ..+.......++.+++ .++.+..+..+||||||||+||+|-|.--|+||+||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l----------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFAL----------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCC----------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 99998632 1122222222333322 234556667899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHh--CCCeEEEEecCcch-hhcCCEEEEEeCCeE
Q 041277 531 DSESERVVQEALDKAV--VGRTTIIIAHRLST-IRNADVIAVVQDGQV 575 (1133)
Q Consensus 531 D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~-~~~~d~i~~l~~G~i 575 (1133)
|+.+.+.|.+.|.++. ++..++.|||+.+. ++++|+++-+..|++
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999998874 57899999999987 788999999999986
No 307
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.5e-39 Score=348.29 Aligned_cols=204 Identities=31% Similarity=0.456 Sum_probs=172.6
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HHh
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WLR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~r 436 (1133)
++++|+++.|++.. ...+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996421 24589999999999999999999999999999999999999999999999999776543 467
Q ss_pred hhceEEecCCCCcc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 437 SQMGLVSQEPALFA-TSIKENILFGKE---DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~-~ti~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
+.++|++|++.+|. .|+.||+.++.. ..+. +++.++++..++.+++.+. +.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYY-----------PHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHH
Confidence 88999999999987 599999987532 1222 2344455555554444443 458999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
+||||++.+|+++||||||++||+++++.+.+.|+++. +++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998875 38999999999997767999999999986
No 308
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.6e-39 Score=357.91 Aligned_cols=228 Identities=28% Similarity=0.431 Sum_probs=185.1
Q ss_pred EEEEEEEEEcCCC------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH--
Q 041277 361 VEFKCVQFAYPSR------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-- 432 (1133)
Q Consensus 361 i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-- 432 (1133)
|+++||+|+|+.. .++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 7899999999731 02469999999999999999999999999999999999999999999999999887654
Q ss_pred -HHHhhhceEEecCCC--Cc-cccHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHHhCCCcccc-cccCCCCCCChHH
Q 041277 433 -KWLRSQMGLVSQEPA--LF-ATSIKENILFGKE---DASMEEVIEAAKASNAHNFIRQLPQQYDT-QVGERGVQMSGGQ 504 (1133)
Q Consensus 433 -~~~r~~i~~v~Q~~~--l~-~~ti~eni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGq 504 (1133)
..+++.++|++|++. ++ ..|++||+.+... ....++ ....+++.++.+ |+++ .....+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 346788999999984 44 3599999865311 111111 111223444443 4542 4456678999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999988753 7899999999999975 999999999999999999
Q ss_pred chhccccchhhHHHH
Q 041277 582 DELIQAESGLYTSLV 596 (1133)
Q Consensus 582 ~~l~~~~~~~~~~~~ 596 (1133)
+++.. .++.|...+
T Consensus 237 ~~~~~-~~~~~~~~~ 250 (268)
T PRK10419 237 GDKLT-FSSPAGRVL 250 (268)
T ss_pred hhccC-CCCHHHHHH
Confidence 99886 345454433
No 309
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-39 Score=332.69 Aligned_cols=171 Identities=56% Similarity=0.896 Sum_probs=160.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|+++ ...+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999753 135899999999999999999999999999999999999999999999999998887777888999
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++.+|+.|++||+ ||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
+||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999998877899999999999988899999999985
No 310
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-39 Score=335.59 Aligned_cols=172 Identities=42% Similarity=0.661 Sum_probs=158.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC--HHHHhhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ--LKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~--~~~~r~~ 438 (1133)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 478999999974 34899999999999999999999999999999999999999999999999998775 5567889
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
++|++|+|.+|.. |++||+.+. ||||||||++||||++++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 9999999998864 999998763 999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999998754 6999999999999985 99999999985
No 311
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-39 Score=346.32 Aligned_cols=200 Identities=31% Similarity=0.445 Sum_probs=166.6
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC----CHHHHhh
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL----QLKWLRS 437 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~----~~~~~r~ 437 (1133)
++ |++++|++. .+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++... +....++
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 44 899999753 24 99999999 99999999999999999999999999999999999988643 2334677
Q ss_pred hceEEecCCCCcc-ccHHHHHhcCCCCCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 438 QMGLVSQEPALFA-TSIKENILFGKEDASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~-~ti~eni~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
+++|++|++.+|. .|++||+.++...... +++.+.++..+ ++......+.+||||||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLG-----------LDHLLNRYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcC-----------CHhHhhcCcccCCHHHHHHHHHHH
Confidence 8999999999986 4999999876432111 22333333333 333444566799999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|++.+|+++||||||++||+.+++.+.+.++++. + ++|+|++||+++.+.. ||++++|++|+++++|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998874 3 7999999999999865 9999999999998765
No 312
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-39 Score=334.06 Aligned_cols=170 Identities=33% Similarity=0.608 Sum_probs=156.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGKK---TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECCe---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 4689999999743 4899999999999999999999999999999999999999999999999987655 56778899
Q ss_pred EEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 441 LVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
|++|++.+|.+ |++||+. ||||||||++||||++.+|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999999876 9999974 99999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
++||||||++||+.+.+.+.+.|++.. +|.|+|++||+.+.+.. ||++++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999875 47899999999998875 999999999974
No 313
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-39 Score=341.50 Aligned_cols=191 Identities=24% Similarity=0.371 Sum_probs=162.8
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC---CCccEEEECCeecCCCCHHHH
Q 041277 360 EVEFKCVQFAYPSR-PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA---PLGGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~---~~~G~i~~~g~~~~~~~~~~~ 435 (1133)
.+.++||+|.|+.. .++.+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 36899999999753 34569999999999999999999999999999999999999 89999999999987654 356
Q ss_pred hhhceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 436 RSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
+++++|++|++.+|.. |++||+.++... . ..+....||||||||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------~------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC----------K------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh----------c------------------cccchhhCCHHHHHHHHHHHHH
Confidence 7789999999988875 999999875210 0 1223458999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecC-cchhh-cCCEEEEEeCCeEEeec
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHR-LSTIR-NADVIAVVQDGQVMETG 579 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~-~~~~~-~~d~i~~l~~G~i~~~g 579 (1133)
+++|+++||||||++||+++++.+.+.++++.+ +.|+|+++|+ .+.+. .||++++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998753 5676766554 56665 59999999999998764
No 314
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-39 Score=310.06 Aligned_cols=208 Identities=29% Similarity=0.384 Sum_probs=173.9
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HH
Q 041277 360 EVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WL 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~ 435 (1133)
-|+++++++.-+... +..+|++++|.|++||.+|||||||||||||+.+++|+-+|++|+|++.|+++.+++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 477888888775432 34689999999999999999999999999999999999999999999999999998754 34
Q ss_pred h-hhceEEecCCCCcc-ccHHHHHhcCCCCCC------HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 436 R-SQMGLVSQEPALFA-TSIKENILFGKEDAS------MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 436 r-~~i~~v~Q~~~l~~-~ti~eni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
| +++|+|+|...|.+ .|-.||+..+..-.. .+...+.++.+++.+ .+...+.+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~-----------Rl~HyP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGK-----------RLTHYPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccc-----------ccccCccccCchHHHH
Confidence 4 57999999998875 599999987643111 122333344444444 4444556999999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
||||||+...|+||+-||||-+||.+|.+.|.+.+-.+. .|.|.|+|||+......|||++-|.+|++++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999987653 58999999999999999999999999999863
No 315
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.7e-39 Score=353.75 Aligned_cols=214 Identities=25% Similarity=0.397 Sum_probs=176.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC----CccEEEECCeecCCCCHHHH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP----LGGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~----~~G~i~~~g~~~~~~~~~~~ 435 (1133)
.++++|++++| ++ ++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...
T Consensus 4 ~l~~~~l~~~~-~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-AQ---PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-cc---ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 32 489999999999999999999999999999999999999 999999999988632 222
Q ss_pred hhhceEEecCCC-Ccc--ccHHHHHhcC----CCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 436 RSQMGLVSQEPA-LFA--TSIKENILFG----KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 436 r~~i~~v~Q~~~-l~~--~ti~eni~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++.++||+|++. .|. .|+.+|+.+. ......+++.+.++..++.+. ++.++....+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 343 4888887542 111223445555555554321 1234556679999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+|||||+.+|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999998874 37899999999999865 9999999999999999999987
Q ss_pred cc
Q 041277 586 QA 587 (1133)
Q Consensus 586 ~~ 587 (1133)
+.
T Consensus 230 ~~ 231 (254)
T PRK10418 230 NA 231 (254)
T ss_pred hC
Confidence 63
No 316
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=6.3e-39 Score=353.16 Aligned_cols=224 Identities=29% Similarity=0.430 Sum_probs=180.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCee-----cCCCCHHH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS-----IDKLQLKW 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~-----~~~~~~~~ 434 (1133)
.|+++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGGG---KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCCc---eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 48999999999743 48999999999999999999999999999999999999999999999987 76665543
Q ss_pred ----HhhhceEEecCCC--Cc-cccHHHHHhcCC---CCCCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChH
Q 041277 435 ----LRSQMGLVSQEPA--LF-ATSIKENILFGK---EDASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGG 503 (1133)
Q Consensus 435 ----~r~~i~~v~Q~~~--l~-~~ti~eni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgG 503 (1133)
+++.++|++|++. ++ ..|+.+|+.+.. ......+. ...+.++++.++ ++ +.....+.+||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~--l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVE--IDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcC--CChhhhhcCchhcCHH
Confidence 2457999999985 22 348888885421 00111111 122344555553 32 3556677899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. .+.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998864 38999999999999875 99999999999999999
Q ss_pred cchhccccchhhH
Q 041277 581 HDELIQAESGLYT 593 (1133)
Q Consensus 581 ~~~l~~~~~~~~~ 593 (1133)
++++.......|.
T Consensus 233 ~~~~~~~~~~~~~ 245 (253)
T TIGR02323 233 TDQVLDDPQHPYT 245 (253)
T ss_pred HHHHhcCCCCHHH
Confidence 9988753333444
No 317
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-39 Score=304.64 Aligned_cols=220 Identities=27% Similarity=0.511 Sum_probs=186.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCee--cCCCC----HH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS--IDKLQ----LK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~--~~~~~----~~ 433 (1133)
.|+++|++|.|+.. .+|.||+|+.+.||++.+.||||+|||||++.|.-+--|.+|+..|.|.. .+..+ ..
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 48899999999864 38999999999999999999999999999999999999999999998754 33322 35
Q ss_pred HHhhhceEEecCCCCccc-cHHHHHhcC------CC-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 434 WLRSQMGLVSQEPALFAT-SIKENILFG------KE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~-ti~eni~~~------~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
.+|+.+|+|+|+-.|++- ||.||+.-. .+ +....+..+.++...+.++.+++| ..|||||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchh
Confidence 789999999999999865 999998632 11 111234556677777778888877 48999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||+||||||+.+|++|++||||++|||+-..++.+.|+++. .|.|-++|||..+..+. |.+++.|++|+|+|.|+++-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999999999999999986 48999999999999987 99999999999999999887
Q ss_pred hccccchhhH
Q 041277 584 LIQAESGLYT 593 (1133)
Q Consensus 584 l~~~~~~~~~ 593 (1133)
.-+.+...|+
T Consensus 228 ft~p~te~f~ 237 (242)
T COG4161 228 FTEPQTEAFK 237 (242)
T ss_pred ccCccHHHHH
Confidence 7553333333
No 318
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-39 Score=315.31 Aligned_cols=205 Identities=30% Similarity=0.458 Sum_probs=171.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
+..++++.+|++.+ ..+|+|+|++|.+||+++++||||||||||+|+++|+.+|+.|+|.+||..|..-.. .=|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 56778999998764 569999999999999999999999999999999999999999999999998875433 348
Q ss_pred EEecCCCCccc-cHHHHHhcCCCCC--CH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKEDA--SM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
+|+|++-|++- ++.||+.||..-. .. +...+.+..+++.++-++ ...+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~-----------~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHK-----------YIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccccc-----------ceEeecchHHHHHHHHHH
Confidence 99999999976 9999999985421 11 223334445555443322 346899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEe--CCeEEeecCcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQ--DGQVMETGSHD 582 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~~ 582 (1133)
|..+|+.|+||||++|||.-+++.+|+.+.++. .|+.+++|||+++..-. |++++||+ .|+|++.-+++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999999999998764 49999999999998765 99999997 57998865543
No 319
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=8.5e-39 Score=342.81 Aligned_cols=226 Identities=34% Similarity=0.448 Sum_probs=192.0
Q ss_pred cccEEEEEEEEEcCCCC--------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC
Q 041277 358 LGEVEFKCVQFAYPSRP--------ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK 429 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~--------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~ 429 (1133)
..-++.+|+...|+-+. ...+.+++||++++||+++|||.||||||||-.+|+|+.++. |+|.++|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 34588999999987432 134789999999999999999999999999999999999887 999999999998
Q ss_pred CCHHH---HhhhceEEecCCCC--cc-ccHHHHHhcCC----CCC----CHHHHHHHHHHhchHHH-HHhCCCccccccc
Q 041277 430 LQLKW---LRSQMGLVSQEPAL--FA-TSIKENILFGK----EDA----SMEEVIEAAKASNAHNF-IRQLPQQYDTQVG 494 (1133)
Q Consensus 430 ~~~~~---~r~~i~~v~Q~~~l--~~-~ti~eni~~~~----~~~----~~~~~~~~~~~~~~~~~-i~~l~~g~~t~~~ 494 (1133)
.+.+. +|+++-+|+|||+= -+ .||.+-|.-|. |.. .++++.+|++.+|++.- ..+.
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RY--------- 423 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRY--------- 423 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcC---------
Confidence 88765 67899999999963 22 48777765442 222 34567788888887653 2333
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEe
Q 041277 495 ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQ 571 (1133)
Q Consensus 495 ~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~ 571 (1133)
+.++|||||||||||||++-+|++++|||||||||...+.+|.+.++++. .|-+-++|+||+..++. ||+|+||+
T Consensus 424 --PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 424 --PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred --CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 46899999999999999999999999999999999999999999999875 47899999999999987 99999999
Q ss_pred CCeEEeecCcchhccccchhhHHH
Q 041277 572 DGQVMETGSHDELIQAESGLYTSL 595 (1133)
Q Consensus 572 ~G~i~~~g~~~~l~~~~~~~~~~~ 595 (1133)
+|+|||+|+.+++..++...|.+-
T Consensus 502 ~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 502 DGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred CCEEeeeCCHHHHhcCCCcHHHHH
Confidence 999999999999998888888654
No 320
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-39 Score=354.76 Aligned_cols=210 Identities=25% Similarity=0.427 Sum_probs=173.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 48999999999632 358999999999999999999999999999999999999999999999998742 1123469
Q ss_pred eEEecCCCC---ccccHHHHHhcCCCC---------C-CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 440 GLVSQEPAL---FATSIKENILFGKED---------A-SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 440 ~~v~Q~~~l---~~~ti~eni~~~~~~---------~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
+|+||++.+ +..++++|+.++... . ..+++.++++..++.++.+ ....+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-----------RQIGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHH
Confidence 999999865 345899998754210 0 1223445556666554432 234579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|++|||||+.+|+++||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998875 48999999999998865 9999777 8999999999988
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
No 321
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-39 Score=316.37 Aligned_cols=221 Identities=25% Similarity=0.458 Sum_probs=192.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++||+++|++. .+++++|++|++|.+++++||||+|||||+.++.|+.++++|+|.+||.++.+.+.+.|.+.++
T Consensus 2 I~i~nv~K~y~~~---~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGTK---VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCCE---EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 6889999999754 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccc-cHHHHHhcCCCCCC--------HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKEDAS--------MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~~~--------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+.-|+..+-.. ||+|-+.||+-.++ ...+.+|.+-.++.+.-++. -.+||||||||.-||
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----------Ld~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----------LDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh-----------HHhcccchhhhhhhh
Confidence 99999988654 99999999863222 23455666665554433322 237999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcccc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
..+++|.+.++||||..+||......+++.++++.+ |||+++|-|+.+++.. +|+|+-|++|+++.+|+++|+++
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~-- 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ-- 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC--
Confidence 999999999999999999999999999999998753 8999999999999875 99999999999999999999997
Q ss_pred chhhHHHHH
Q 041277 589 SGLYTSLVR 597 (1133)
Q Consensus 589 ~~~~~~~~~ 597 (1133)
.....+++.
T Consensus 226 ~~~L~eiyd 234 (252)
T COG4604 226 PEILSEIYD 234 (252)
T ss_pred HHHHHHHhc
Confidence 344455543
No 322
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=7.4e-39 Score=336.73 Aligned_cols=183 Identities=31% Similarity=0.511 Sum_probs=161.7
Q ss_pred cEEEEEEEEEcCCC---CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc--CCCccEEEECCeecCCCCHHH
Q 041277 360 EVEFKCVQFAYPSR---PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY--APLGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~---~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~--~~~~G~i~~~g~~~~~~~~~~ 434 (1133)
.|+++|++|+|++. .++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 0245999999999999999999999999999999999999 9999999999998864 25
Q ss_pred HhhhceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 435 LRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
++++++|++|++.+|.. |++||+.++.. . . .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------------~--~-------------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK-------------L--R-------------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH-------------h--c-------------------cCCHHHHHHHHHHHH
Confidence 67889999999998875 99999975310 0 0 699999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcc-hhh-cCCEEEEEeCCeEEeec
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLS-TIR-NADVIAVVQDGQVMETG 579 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~-~~d~i~~l~~G~i~~~g 579 (1133)
++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999875 4899999999997 565 49999999999998754
No 323
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.1e-38 Score=346.24 Aligned_cols=208 Identities=24% Similarity=0.425 Sum_probs=178.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-++++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~~---~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECCc---eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 48899999999743 499999999999999999999999999999999999999999999987 2369
Q ss_pred eEEecCCCCcc---ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 440 GLVSQEPALFA---TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 440 ~~v~Q~~~l~~---~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+|++|++.++. .|+++|+.+.. ....+++.++++..++.+.++.. ..+||||||||++||||++.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRP-GTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLN 137 (251)
T ss_pred EEeccccccccccChhHHHHHhccc-cccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhc
Confidence 99999998764 48999987642 33456777888888877665543 35899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhhH
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 593 (1133)
+|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++ ++++.|+++++.+ ...|.
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~~~~~ 214 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--HPEFI 214 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--CHHHH
Confidence 9999999999999999999999999988743 7999999999999865 999999965 7999999999864 34455
Q ss_pred HHH
Q 041277 594 SLV 596 (1133)
Q Consensus 594 ~~~ 596 (1133)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 554
No 324
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=391.73 Aligned_cols=224 Identities=29% Similarity=0.415 Sum_probs=185.4
Q ss_pred cEEEEEEEEEcCCCC--------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC
Q 041277 360 EVEFKCVQFAYPSRP--------ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~--------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~ 431 (1133)
-++++|++++|+.+. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996311 135899999999999999999999999999999999999999999999999998765
Q ss_pred HH---HHhhhceEEecCC--CCcc-ccHHHHHhcCCC--CC-C----HHHHHHHHHHhchH-HHHHhCCCcccccccCCC
Q 041277 432 LK---WLRSQMGLVSQEP--ALFA-TSIKENILFGKE--DA-S----MEEVIEAAKASNAH-NFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 432 ~~---~~r~~i~~v~Q~~--~l~~-~ti~eni~~~~~--~~-~----~~~~~~~~~~~~~~-~~i~~l~~g~~t~~~~~g 497 (1133)
.. .+|++|+||+|+| .+++ .||.||+.++.. .. . .+++.+.++..++. +..++ ..
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~-----------~~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR-----------YP 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC-----------Cc
Confidence 43 3567899999998 3665 499999976321 11 1 12344555555552 23333 34
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
.+||||||||++|||||+.+|++||||||||+||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 5899999999999999999999999999999999999999999998874 37999999999999876 99999999999
Q ss_pred EEeecCcchhccccchhhHH
Q 041277 575 VMETGSHDELIQAESGLYTS 594 (1133)
Q Consensus 575 i~~~g~~~~l~~~~~~~~~~ 594 (1133)
|++.|+++++..++...|..
T Consensus 542 iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred EEEecCHHHHhcCCCCHHHH
Confidence 99999999997655556655
No 325
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.9e-38 Score=349.27 Aligned_cols=212 Identities=25% Similarity=0.358 Sum_probs=174.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc--cCCCccEEEECCeecCCCCHHHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~--~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
.++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999974 3499999999999999999999999999999999998 6899999999999998877655544
Q ss_pred -hceEEecCCCCccc-cHHHHHhcCCC---------CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCC-CCC
Q 041277 438 -QMGLVSQEPALFAT-SIKENILFGKE---------DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGV-QMS 501 (1133)
Q Consensus 438 -~i~~v~Q~~~l~~~-ti~eni~~~~~---------~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~-~LS 501 (1133)
.++|++|++.++++ |+.+|+.++.. +... +++.++++..++.+ +....... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCC
Confidence 48999999999876 89999876421 0011 12233333333321 12233333 599
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc--CCEEEEEeCCeEEee
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN--ADVIAVVQDGQVMET 578 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~ 578 (1133)
||||||++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999998875 48999999999998874 899999999999999
Q ss_pred cCcchh
Q 041277 579 GSHDEL 584 (1133)
Q Consensus 579 g~~~~l 584 (1133)
|+++++
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 998743
No 326
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.7e-38 Score=335.99 Aligned_cols=185 Identities=31% Similarity=0.461 Sum_probs=162.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc--cCCCccEEEECCeecCCCCHHHH-hh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAPLGGEIILDGVSIDKLQLKWL-RS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 437 (1133)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.+||+++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468999999974 3599999999999999999999999999999999999 58999999999999988776554 45
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+++|+||++.++++ ++++|+ ... ..+||||||||++||||+++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~~-----------~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RYV-----------NEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hhc-----------cccCCHHHHHHHHHHHHHhc
Confidence 69999999998876 666665 011 13799999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh--cCCEEEEEeCCeEEeecCcchhc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR--NADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~--~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.| +.|+.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999999999875 4789999999999987 59999999999999998 44443
No 327
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.1e-38 Score=331.70 Aligned_cols=177 Identities=33% Similarity=0.552 Sum_probs=158.6
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999974 348999999999999999999999999999999999999999999999999988888788888999
Q ss_pred EecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 041277 442 VSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRIL 521 (1133)
Q Consensus 442 v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~il 521 (1133)
++| +++..++.+++.. .+.+||||||||++||||++++|+++
T Consensus 78 ~~q---------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 78 VPQ---------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred HHH---------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999 5555666555433 34589999999999999999999999
Q ss_pred EEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 522 LLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 522 llDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
||||||++||+++.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999988754 7899999999999855 9999999999998654
No 328
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=9e-39 Score=340.96 Aligned_cols=194 Identities=31% Similarity=0.469 Sum_probs=162.4
Q ss_pred EEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH----HHHhhh
Q 041277 363 FKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL----KWLRSQ 438 (1133)
Q Consensus 363 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~----~~~r~~ 438 (1133)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999974 349999999999999999999999999999999999999999999999999765432 235678
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCCCC--C----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 439 MGLVSQEPALFA-TSIKENILFGKED--A----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 439 i~~v~Q~~~l~~-~ti~eni~~~~~~--~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
++|++|++.+|. .|++||+.++... . ..+++.++++..++.++. .....+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-----------KQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-----------cCChhhCCHHHHHHHHHH
Confidence 999999999987 5999999874321 1 123344555555554433 334468999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEE
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
|||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999998875 489999999999987779999875
No 329
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.1e-38 Score=332.18 Aligned_cols=172 Identities=26% Similarity=0.488 Sum_probs=156.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 438 (1133)
.++++|++++| +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...+++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38899999988 7999999999999999999999999999999999999999999999999988763 456778
Q ss_pred ceEEecCC---CCc-cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 439 MGLVSQEP---ALF-ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 439 i~~v~Q~~---~l~-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
++|++|++ .++ ..|++||+.++.. ||||||||++||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHH
Confidence 99999995 344 4699999986421 999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
+.+|+++||||||++||+++++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999874 48999999999998876 999999999974
No 330
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.2e-38 Score=350.26 Aligned_cols=219 Identities=22% Similarity=0.319 Sum_probs=168.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc--CCCccEEEECCeecCCCCHHHHh-h
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY--APLGGEIILDGVSIDKLQLKWLR-S 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~--~~~~G~i~~~g~~~~~~~~~~~r-~ 437 (1133)
|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++...+....+ +
T Consensus 2 i~~~nl~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVEDK---AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCCe---eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 6899999999743 4899999999999999999999999999999999994 79999999999999877765554 5
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCCCC---CHHHHHHHHH-HhchHHHHH--hCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKEDA---SMEEVIEAAK-ASNAHNFIR--QLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~~~---~~~~~~~~~~-~~~~~~~i~--~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
.++|++|++.++.. |..+++.+..... ...+..+..+ ...+.+.++ .+|+++.+... ..+||||||||++|
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~LS~G~~qrv~l 156 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV--NVGFSGGEKKRNDI 156 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC--CCCCCHHHHHHHHH
Confidence 69999999987754 5555543211100 0000000000 001112222 23333333211 13799999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhc--CCEEEEEeCCeEEeecCcchh
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRN--ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++++.
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999988754 7999999999999876 899999999999999988754
No 331
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.2e-38 Score=334.31 Aligned_cols=195 Identities=26% Similarity=0.402 Sum_probs=167.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|+++ .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 1 l~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDGR---ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCCc---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 4789999999743 4899999999999999999999999999999999999999999999999986543 45778999
Q ss_pred EEecCCCCc-cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 441 LVSQEPALF-ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 441 ~v~Q~~~l~-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
|++|++.++ ..|++||+.+..+....+++.++++..++.++... ...+||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999886 46999999886544455667777777777654332 235899999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEE
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVV 570 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l 570 (1133)
++||||||++||+.+++.+.+.|++.. +++|+|++||+...+. .||+++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998764 4899999999887665 58999877
No 332
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-38 Score=333.98 Aligned_cols=182 Identities=26% Similarity=0.447 Sum_probs=160.4
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc--CCCccEEEECCeecCCCCHHHHh
Q 041277 360 EVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY--APLGGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~--~~~~G~i~~~g~~~~~~~~~~~r 436 (1133)
.|+++|++++|++.. ++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 478999999997421 245899999999999999999999999999999999986 489999999999875 4567
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
++++|++|++.+|.. |++||+.++.. ++ +||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 789999999988875 99999986310 00 79999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcch-h-hcCCEEEEEeC-CeEEeec
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST-I-RNADVIAVVQD-GQVMETG 579 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l~~-G~i~~~g 579 (1133)
.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++. + ..||+|++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999875 48999999999984 4 55999999999 9998865
No 333
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-39 Score=334.49 Aligned_cols=198 Identities=33% Similarity=0.507 Sum_probs=173.5
Q ss_pred cEEEEEEEEEcCCCC------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH
Q 041277 360 EVEFKCVQFAYPSRP------ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~ 433 (1133)
-++++|+++.|+... ...+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|+|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 378899999997532 136899999999999999999999999999999999999999999999999987654
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHH-HHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN-FIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
.....+++.+.++.+++.+ ++.+.| .+|||||||||+|||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IAR 122 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIAR 122 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHH
Confidence 1223456778888877655 556665 489999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|+++++|||+|+||.-.+.++.+.+.++. .|-|.++|||+++.+++ ||||.||..|+|+|.|+.+++..++.
T Consensus 123 ALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~ 202 (268)
T COG4608 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPL 202 (268)
T ss_pred HHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCC
Confidence 9999999999999999999999999999998875 48999999999999998 99999999999999999999998778
Q ss_pred hhhHHHHHh
Q 041277 590 GLYTSLVRL 598 (1133)
Q Consensus 590 ~~~~~~~~~ 598 (1133)
..|.+..-.
T Consensus 203 HpYTk~Ll~ 211 (268)
T COG4608 203 HPYTKALLS 211 (268)
T ss_pred CHHHHHHHH
Confidence 888876544
No 334
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.3e-38 Score=324.04 Aligned_cols=164 Identities=30% Similarity=0.486 Sum_probs=150.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 4789999999642 35899999999999999999999999999999999999999999999873 5799
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++.+++.|++||+.++ .+.+||||||||++||||++++|++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999888999999864 1358999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
+||||||++||+++++.+.+.+++. ++|+|++||+++....||++++|++|-
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999999999999999876 689999999998777799999998763
No 335
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.9e-38 Score=344.64 Aligned_cols=206 Identities=24% Similarity=0.401 Sum_probs=172.7
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++||++. . +|+|+||++++||+++|+||||||||||+++|+|++++ +|+|.++|+++...+...+++.++|
T Consensus 2 ~~~~l~~~----~---~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS----T---RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh----c---eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 46777774 1 79999999999999999999999999999999999864 9999999999988887778888999
Q ss_pred EecCCCCc-cccHHHHHhcCCCCC-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 442 VSQEPALF-ATSIKENILFGKEDA-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 442 v~Q~~~l~-~~ti~eni~~~~~~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
++|++.++ ..|+++|+.++.+.. . .+++.++++..++.+ ........||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD-----------KLGRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHHHh
Confidence 99998654 679999999864321 1 123334444444433 334455689999999999999999
Q ss_pred h-------CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 516 K-------APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 516 ~-------~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
. +|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 7 679999999999999999999999998875 58999999999997765 99999999999999999988864
No 336
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3.5e-38 Score=341.62 Aligned_cols=206 Identities=29% Similarity=0.440 Sum_probs=166.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC----CccEEEECCeecCCCCHHHHhhhceEEecCCC-Cc-c-
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP----LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPA-LF-A- 450 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~----~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-l~-~- 450 (1133)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...++.++|++|++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998654 223467999999995 34 3
Q ss_pred ccHHHHHhcCCC--CC-C---HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 041277 451 TSIKENILFGKE--DA-S---MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLD 524 (1133)
Q Consensus 451 ~ti~eni~~~~~--~~-~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlD 524 (1133)
.|+.||+.+... .. . .+++.+.++..++.+ + ++.....+.+||||||||++||||++++|+++|||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 489999865321 01 1 123444444444321 1 13344556789999999999999999999999999
Q ss_pred CcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhhH
Q 041277 525 EATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593 (1133)
Q Consensus 525 E~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 593 (1133)
|||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.......|.
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHH
Confidence 99999999999999999998753 7899999999999865 999999999999999999998753333333
No 337
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6e-38 Score=333.26 Aligned_cols=195 Identities=22% Similarity=0.347 Sum_probs=167.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDER---ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECCE---EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 6899999999743 4899999999999999999999999999999999999999999999999987654 35677899
Q ss_pred EEecCCCCcc-ccHHHHHhcCCCC---CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 441 LVSQEPALFA-TSIKENILFGKED---ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
|++|++.+++ .|++||+.++.+. ...+++.++++..++.++.++ ...+||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhc
Confidence 9999998886 5999999875421 234566677777777655433 235899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEE
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVV 570 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l 570 (1133)
+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998864 57899999999999976 4677776
No 338
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=6.4e-38 Score=339.15 Aligned_cols=191 Identities=32% Similarity=0.434 Sum_probs=160.5
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcc-ccHHHHH
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENI 457 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eni 457 (1133)
|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999987 5999999
Q ss_pred hcCC----CCCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccC
Q 041277 458 LFGK----EDASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529 (1133)
Q Consensus 458 ~~~~----~~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~ 529 (1133)
.++. +..+.+ ++.+.++..++.+.. .....+||||||||++|||||+.+|+++||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAA-----------DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHH-----------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 8742 122222 234444444444333 334468999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 530 LDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 530 lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
||+.+++.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998864 37899999999998865 9999999999999998776654
No 339
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.2e-38 Score=319.35 Aligned_cols=159 Identities=31% Similarity=0.527 Sum_probs=147.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 439 (1133)
|+++|++++|+++ ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +..++++
T Consensus 1 l~~~~l~~~~~~~---~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGGV---KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 4789999999743 49999999999999999999999999999999999999999999999999988765 3457789
Q ss_pred eEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 440 GLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 440 ~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
+|++| ||||||||++||||++++|+
T Consensus 78 ~~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 78 AMVYQ-------------------------------------------------------LSVGERQMVEIARALARNAR 102 (163)
T ss_pred EEEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999 99999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEe
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
++||||||++||+++++.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998874 58999999999998865 99999999999975
No 340
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.9e-38 Score=341.47 Aligned_cols=192 Identities=26% Similarity=0.403 Sum_probs=156.9
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEe-cCCCCcc-ccH
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS-QEPALFA-TSI 453 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~l~~-~ti 453 (1133)
+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.++. .|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3599999999999999999999999999999999999999999999999987543 345677899998 5667764 599
Q ss_pred HHHHhcCCC--CCCHHHH----HHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcc
Q 041277 454 KENILFGKE--DASMEEV----IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEAT 527 (1133)
Q Consensus 454 ~eni~~~~~--~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~t 527 (1133)
+||+.+... ....++. .++++..++.+. .+ ....+||||||||++||||++.+|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~----~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------LD----TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-------hc----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999976421 1222222 222333333222 22 234579999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 528 SALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 528 s~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999874 37899999999998865 9999999999998765
No 341
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.6e-38 Score=331.40 Aligned_cols=194 Identities=23% Similarity=0.388 Sum_probs=162.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....++++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999974 349999999999999999999999999999999999999999999999998865 3456788999
Q ss_pred EEecCCCCcc-ccHHHHHhcCCC-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 441 LVSQEPALFA-TSIKENILFGKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|++|++.++. .|++||+.++.. .....++.++++..++.+. ......+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-----------IDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-----------hhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 9999998874 699999998631 1122234444444433222 22233579999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEE
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAV 569 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~ 569 (1133)
++|||||||++||+.+.+.+.+.|++.. +++|+|++||+.+.+.+||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999999864 58999999999999999997543
No 342
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-38 Score=323.63 Aligned_cols=196 Identities=29% Similarity=0.474 Sum_probs=178.4
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC----CHHHHhhhceEEecCCCCccc-cHH
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL----QLKWLRSQMGLVSQEPALFAT-SIK 454 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~Q~~~l~~~-ti~ 454 (1133)
=++||+.+.-.++||-|+||||||||+|+|+|+..|++|.|.+||.-+.+. ...--+++|||||||..||+- ||+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 468888888689999999999999999999999999999999999877543 334456789999999999965 999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHH
Q 041277 455 ENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES 534 (1133)
Q Consensus 455 eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~ 534 (1133)
.|++||....+..+..+.+...++...+++.|. +|||||||||||+|||+.+|++|+||||.|+||...
T Consensus 95 gNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~-----------~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 95 GNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG-----------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred cchhhhhcccchHhHHHHHHHhCcHHHHhhCCC-----------ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 999999987778888899999999999999884 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 535 ERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 535 ~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+++++-.++++.+ +.-++.|||.++.+.. ||+|++|++|++...|..+|...
T Consensus 164 K~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 164 KREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999998864 6789999999998865 99999999999999999999886
No 343
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.8e-37 Score=330.56 Aligned_cols=196 Identities=21% Similarity=0.287 Sum_probs=163.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-++++|++++|+++ ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNEE---PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCCc---eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 48999999999743 489999999999999999999999999999999999999999999999988652 345679
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCC-HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DAS-MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
+|++|++.++.. |++||+.++.. ... .+.+.+.++..++.+. ......+||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-----------EDTLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-----------ccCChhhCCHHHHHHHHHHHHHh
Confidence 999999998876 99999976422 111 2233334444433222 23344689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeC
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQD 572 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~ 572 (1133)
++|+++||||||++||+++++.+.+.+++.. +++|+|++||+++.+.. ||++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998764 57999999999999876 999999864
No 344
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.2e-37 Score=378.50 Aligned_cols=217 Identities=31% Similarity=0.481 Sum_probs=177.8
Q ss_pred cEEEEEEEEEcCCC--------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC
Q 041277 360 EVEFKCVQFAYPSR--------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~--------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~ 431 (1133)
-|+++|++++|+.. .++.+|+|+||+|++||+++|+||||||||||+++|+|++ |++|+|+++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999631 1245899999999999999999999999999999999998 48999999999987765
Q ss_pred HHH---HhhhceEEecCC--CCcc-ccHHHHHhcCCC----CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCC
Q 041277 432 LKW---LRSQMGLVSQEP--ALFA-TSIKENILFGKE----DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 432 ~~~---~r~~i~~v~Q~~--~l~~-~ti~eni~~~~~----~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 497 (1133)
... +|++++||+|++ .+++ .|++||+.++.. ... .+++.++++..++.+ .......
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~ 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHRYP 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhcCC
Confidence 433 467899999998 3665 499999987521 011 122333444444321 1223345
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|+
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 6899999999999999999999999999999999999999999999874 37999999999999875 99999999999
Q ss_pred EEeecCcchhccc
Q 041277 575 VMETGSHDELIQA 587 (1133)
Q Consensus 575 i~~~g~~~~l~~~ 587 (1133)
+++.|+++++.+.
T Consensus 504 i~~~~~~~~~~~~ 516 (529)
T PRK15134 504 VVEQGDCERVFAA 516 (529)
T ss_pred EEEEcCHHHHhcC
Confidence 9999999998753
No 345
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=324.70 Aligned_cols=418 Identities=16% Similarity=0.180 Sum_probs=293.2
Q ss_pred HHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 143 TSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM-LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAG 221 (1133)
Q Consensus 143 ~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (1133)
.|+++|+++.-..+.+....++.+++.++....-++.. +|.-...++..+.+-.++...+.+.+.+...++++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 58999999988887766666665555444433333332 33322333344444555666666777777777777777877
Q ss_pred HHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HhcCcc
Q 041277 222 TIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAI-GSNGVTFGIWSFLCYYGSRMV----MYHGAQ 296 (1133)
Q Consensus 222 ~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~v----~~~~~t 296 (1133)
-.-.+...|.+.|..|+.++.+....+...++..+...+.....-... ..+++-+++..+...+-+..+ ..+.++
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 777888899999999999999887666666555444333222111111 122222322221111101111 234677
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-------------CCCC------cc-c
Q 041277 297 GGTVFAVG----ASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKID-------------SDSM------EG-E 352 (1133)
Q Consensus 297 ~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~-------------~~~~------~~-~ 352 (1133)
+..+...+ +++..+...++.+......+.+-..-..||.++++.-.+.. .+.. .+ .
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 77776554 23334445566666666667777777889888765321110 0000 00 0
Q ss_pred ccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH
Q 041277 353 ILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL 432 (1133)
Q Consensus 353 ~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~ 432 (1133)
.....+..|+|++|+++-|++ ...+.+|+||+|+.|+.+.|+||||||||+|++.+.|+++..+|.+.--...-.
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---- 500 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---- 500 (659)
T ss_pred ccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----
Confidence 011123569999999999875 345678899999999999999999999999999999999999999975432110
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCC-------CCCHHHHHHHHHHhchHHHHHhCCCcccccc-cCCCCCCChHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKE-------DASMEEVIEAAKASNAHNFIRQLPQQYDTQV-GERGVQMSGGQ 504 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGq 504 (1133)
+.+=||||.|+.-.||.||-+.|+.. ..+++++.+.++.+++.+.+++. +|+|+.+ -+-...||+||
T Consensus 501 ----~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 501 ----KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred ----CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHH
Confidence 35889999999999999999999721 35788999999999998877664 6888655 34567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
+||+|.||-++++|++-+|||+|||+|.+.|..+.+.+++. |.|.|-|.||-+.-+.-|.++-|+.
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999999999999999999999888764 8999999999999888999999976
No 346
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.5e-37 Score=327.17 Aligned_cols=194 Identities=25% Similarity=0.354 Sum_probs=165.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .. .+++++
T Consensus 3 l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGGR---VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEECCe---EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 7899999999743 48999999999999999999999999999999999999999999999998753 22 778899
Q ss_pred EEecCCCCc-cccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 441 LVSQEPALF-ATSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 441 ~v~Q~~~l~-~~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
|++|++.++ ..|++||+.+... ....+++.++++..++.++... ...+||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-----------PFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999988776 5699999976432 2234557777777777654322 2247999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHH-hCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
|+++||||||++||+.+.+.+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999999875 458999999999999987 99988754
No 347
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.2e-37 Score=326.20 Aligned_cols=193 Identities=22% Similarity=0.336 Sum_probs=162.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++++
T Consensus 1 l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGER---MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECCE---EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 4789999999743 4899999999999999999999999999999999999999999999999987664 35677899
Q ss_pred EEecCCCCcc-ccHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 441 LVSQEPALFA-TSIKENILFGKED--ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
|++|++.+++ .|++||+.+..+. ...+++.++++..++.++++. ...+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-----------PAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 9999998886 5999999865321 123356677777777665433 2358999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHH-hCCCeEEEEecCcchhhcCCEEEE
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRNADVIAV 569 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~i~~ 569 (1133)
|+++||||||++||+.+++.+.+.|.++ .+++|+|++||+...+ .|++++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 9999999999999999999999999886 4589999999998543 2466553
No 348
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-37 Score=372.40 Aligned_cols=219 Identities=19% Similarity=0.348 Sum_probs=177.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-CCccEEEECCeecCCCCH-HHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-PLGGEIILDGVSIDKLQL-KWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-~~~G~i~~~g~~~~~~~~-~~~r~ 437 (1133)
-|+++|++++|+...+.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+. +..++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953212358999999999999999999999999999999999998 599999999999865543 34567
Q ss_pred hceEEecCC---CCcc-ccHHHHHhcCCC-CC------CHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHH
Q 041277 438 QMGLVSQEP---ALFA-TSIKENILFGKE-DA------SMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQK 505 (1133)
Q Consensus 438 ~i~~v~Q~~---~l~~-~ti~eni~~~~~-~~------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 505 (1133)
+++|++|++ .++. .|+.||+.++.. .. ..++. ...+.+.++.+ |++ ........+||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 3665 599999987531 00 11111 11223445544 232 123455678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|+++..|+.++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998864 58999999999999876 99999999999999999888
Q ss_pred hc
Q 041277 584 LI 585 (1133)
Q Consensus 584 l~ 585 (1133)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 74
No 349
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=9.3e-37 Score=329.65 Aligned_cols=200 Identities=30% Similarity=0.350 Sum_probs=159.6
Q ss_pred EEEEEEEEEcCCC----CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEEC--Ce--ecCCCCH
Q 041277 361 VEFKCVQFAYPSR----PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD--GV--SIDKLQL 432 (1133)
Q Consensus 361 i~~~~v~~~y~~~----~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~--g~--~~~~~~~ 432 (1133)
|+++|++++|+.. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6899999999631 11358999999999999999999999999999999999999999999998 42 6655554
Q ss_pred HH---H-hhhceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 433 KW---L-RSQMGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 433 ~~---~-r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
.. + +++++|++|++.++.. |++||+.++.. .... +++.++++..++.+.. ....+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence 33 3 3579999999988865 99999976321 1111 2233333333332211 123456899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEE
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVV 570 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l 570 (1133)
||||||++|||||+.+|+++||||||++||+++++.+.+.|++.. +++|+|++||+++.+. .||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998875 4899999999999886 49999876
No 350
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-36 Score=347.67 Aligned_cols=203 Identities=25% Similarity=0.346 Sum_probs=168.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++|+|+++..+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58899999999765445699999999999999999999999999999999999999999999999752
Q ss_pred eEEecCCCCcc-ccHHHHHhcCC--CCCCHHH----HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFA-TSIKENILFGK--EDASMEE----VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~-~ti~eni~~~~--~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
++.+.+.+++ .|++||+.++. ...+.++ +.++++..++.+++.. ...+||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------CcccCCHHHHHHHHHHH
Confidence 2233444443 49999998642 1222322 3344555555544433 34689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+.+|++|||||||++||+.+++.+.+.|.++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999998864 48999999999999876 99999999999999999999876
No 351
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.3e-37 Score=371.84 Aligned_cols=221 Identities=24% Similarity=0.408 Sum_probs=175.3
Q ss_pred cEEEEEEEEEcCC--CCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEEC-Cee---cCCCC--
Q 041277 360 EVEFKCVQFAYPS--RPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD-GVS---IDKLQ-- 431 (1133)
Q Consensus 360 ~i~~~~v~~~y~~--~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~-g~~---~~~~~-- 431 (1133)
-++++|++++|++ ....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 112458999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhhhceEEecCCCCccc-cHHHHHhcCCC-CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 432 -LKWLRSQMGLVSQEPALFAT-SIKENILFGKE-DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 432 -~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~-~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
...+|++|+|+||++.+|.. |++||+.++.. .... +++.++++..++.+. ..+........+|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHH
Confidence 23456789999999988875 99999986321 1111 223333333333210 00012344556899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998874 37999999999999876 999999999999999998
Q ss_pred chhcc
Q 041277 582 DELIQ 586 (1133)
Q Consensus 582 ~~l~~ 586 (1133)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 87754
No 352
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5.9e-35 Score=382.21 Aligned_cols=215 Identities=20% Similarity=0.329 Sum_probs=183.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..|+++|++++|+++ ++.+|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.+ +....|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 359999999999742 2459999999999999999999999999999999999999999999999999865 34567788
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
||||||++.++.. |++||+.+... .... +.+.+.++..++.++.++ ...+||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk-----------~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADR-----------LAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999999988864 99999976311 1112 223445555665554433 3458999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+.+|+|++|||||++||+.+++.+++.|+++. +|+|+|++||+++.++. ||||++|++|+++..|+++++.+
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999999999999999999999999864 58999999999999986 99999999999999999999865
No 353
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1e-36 Score=328.23 Aligned_cols=186 Identities=25% Similarity=0.463 Sum_probs=157.3
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCC---ccccHHHHHhcC
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPAL---FATSIKENILFG 460 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l---~~~ti~eni~~~ 460 (1133)
|++++||+++|+||||||||||+++|+|+++|++|+|.+||+++. ..+++++|++|++.+ ++.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 246789999999876 357999999875
Q ss_pred CC---------C-CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCC
Q 041277 461 KE---------D-ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL 530 (1133)
Q Consensus 461 ~~---------~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~l 530 (1133)
.. . ...+++.++++..++.++.. ....+||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELAD-----------RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 0 11234555566655544332 234579999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 531 DSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 531 D~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|+++ +|++++.|+++++.+
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 9999999999998875 58999999999998865 9999999 899999999999865
No 354
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.3e-36 Score=319.57 Aligned_cols=174 Identities=33% Similarity=0.517 Sum_probs=145.9
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC--CCHHHHhhhceEEecCC--CCccc
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK--LQLKWLRSQMGLVSQEP--ALFAT 451 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~--~l~~~ 451 (1133)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++.++|++|+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 358999999999999999999999999999999999999999999999999852 22345678899999998 46778
Q ss_pred cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 041277 452 SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDE 525 (1133)
Q Consensus 452 ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE 525 (1133)
|++||+.++.. ..+. +++.++++..++.++.++ ...+||||||||++|||||+++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER-----------PTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987521 1222 234555555565544433 335899999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcch
Q 041277 526 ATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST 560 (1133)
Q Consensus 526 ~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~ 560 (1133)
||++||+.+++.+.+.|++.. +++|+|++||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998874 48999999999865
No 355
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-36 Score=331.30 Aligned_cols=204 Identities=23% Similarity=0.311 Sum_probs=167.1
Q ss_pred cEEEEEEEEEcCCC-----------------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEE
Q 041277 360 EVEFKCVQFAYPSR-----------------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL 422 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~-----------------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~ 422 (1133)
.|+++||++.|... ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 46777777776431 1235899999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhhhceEEecCCCCcc-ccHHHHHhcCC--CCCCHHHHHH----HHHHhchHHHHHhCCCcccccccC
Q 041277 423 DGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGK--EDASMEEVIE----AAKASNAHNFIRQLPQQYDTQVGE 495 (1133)
Q Consensus 423 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~--~~~~~~~~~~----~~~~~~~~~~i~~l~~g~~t~~~~ 495 (1133)
+|. +++++|++.+++ .|++||+.++. ...+.++..+ +++..++. ..+..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-----------EFIYQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcC
Confidence 984 567888887765 49999997642 1223333322 23333332 33344
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCC
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDG 573 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 573 (1133)
.+.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.+.++. .++|+|++||+++.+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 567899999999999999999999999999999999999999999998764 58999999999999876 9999999999
Q ss_pred eEEeecCcchhccc
Q 041277 574 QVMETGSHDELIQA 587 (1133)
Q Consensus 574 ~i~~~g~~~~l~~~ 587 (1133)
++++.|+++++...
T Consensus 220 ~i~~~g~~~~~~~~ 233 (264)
T PRK13546 220 KLKDYGELDDVLPK 233 (264)
T ss_pred EEEEeCCHHHHHHH
Confidence 99999999998763
No 356
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=6.4e-37 Score=375.48 Aligned_cols=202 Identities=26% Similarity=0.420 Sum_probs=169.0
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC--ccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-c
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL--GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-S 452 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~--~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-t 452 (1133)
+.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++.. ..++++|||+|++.+++. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999885 8999999998742 345679999999999864 9
Q ss_pred HHHHHhcCC----C-CCCHHHHHHHHHHhchHHHHHh--CCCcccccccCC-CCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 041277 453 IKENILFGK----E-DASMEEVIEAAKASNAHNFIRQ--LPQQYDTQVGER-GVQMSGGQKQRIAIARAIIKAPRILLLD 524 (1133)
Q Consensus 453 i~eni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~-g~~LSgGqkqri~iARal~~~~~illlD 524 (1133)
|+||+.++. + ..+.++..+. +++.++. +++..||.+|++ +..||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999998752 1 2233322211 1223333 344458888764 6789999999999999999999999999
Q ss_pred CcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcch-h-hcCCEEEEEeCCeEEeecCcchhcc
Q 041277 525 EATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST-I-RNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 525 E~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||++||+.++..+.+.|+++. +|+|+|+++|+++. + +.+|+|++|++|++++.|+++++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999999875 58999999999984 5 4599999999999999999998854
No 357
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2e-36 Score=325.85 Aligned_cols=193 Identities=27% Similarity=0.384 Sum_probs=154.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
+.++|++.+|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 89 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------- 89 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence 667888888864 3599999999999999999999999999999999999999999999999876321
Q ss_pred EEecCCCC-ccccHHHHHhcCCC--CCCHHH----HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPAL-FATSIKENILFGKE--DASMEE----VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l-~~~ti~eni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
.+...+ .+.|++||+.++.. ..+.++ +.++++..++.+. ......+||||||||++||||
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~lara 156 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF-----------IDLPVKTYSSGMKARLAFAIA 156 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHHH
Confidence 111222 24699999987532 112222 2233333333222 223345899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
++++|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999998864 47899999999998865 9999999999998765
No 358
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=9.6e-37 Score=374.94 Aligned_cols=204 Identities=27% Similarity=0.432 Sum_probs=173.0
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC---ccEEEECCeecCCCCHHHHhhhceEEecCCCCccc
Q 041277 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT 451 (1133)
Q Consensus 375 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 451 (1133)
++++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||.++. ...+|+.+|||+|++++++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 456999999999999999999999999999999999999885 799999999875 35678899999999999965
Q ss_pred -cHHHHHhcCCC-----CCCHHHHHHHHHHhchHHHHHh--CCCcccccccCC--CCCCChHHHHHHHHHHHHhhCCCEE
Q 041277 452 -SIKENILFGKE-----DASMEEVIEAAKASNAHNFIRQ--LPQQYDTQVGER--GVQMSGGQKQRIAIARAIIKAPRIL 521 (1133)
Q Consensus 452 -ti~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~--g~~LSgGqkqri~iARal~~~~~il 521 (1133)
||+|||.|+.. ..+.++. ...+++.++. +++..||.+|+. +..||||||||++|||||+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 99999998632 1122221 1122344444 345679999984 4789999999999999999999999
Q ss_pred EEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcc-hh-hcCCEEEEEeCCeEEeecCcchhcc
Q 041277 522 LLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLS-TI-RNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 522 llDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+||||||+||+.+...+.+.++++. +|+|+|+++|+++ .+ +.+|++++|++|+++++|+++++.+
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 9999999999999999999999875 4899999999996 44 5699999999999999999998753
No 359
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=366.46 Aligned_cols=212 Identities=20% Similarity=0.349 Sum_probs=172.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 438 (1133)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++++
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999998762 28999999999999999999999999999999999999999999999999866543 356678
Q ss_pred ceEEecCC---CCccc-cHHHHHhcCCCC-----------CCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCCh
Q 041277 439 MGLVSQEP---ALFAT-SIKENILFGKED-----------ASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSG 502 (1133)
Q Consensus 439 i~~v~Q~~---~l~~~-ti~eni~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSg 502 (1133)
+|||||++ .+++. |++||+.++... ....+. ...+.+.++.+ |+. ........+|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCCh
Confidence 99999984 56754 999999875320 011111 11123344443 232 234455668999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||++++|++|++++.++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998864 58999999999998865 99999999999999887
Q ss_pred cch
Q 041277 581 HDE 583 (1133)
Q Consensus 581 ~~~ 583 (1133)
..+
T Consensus 493 ~~~ 495 (510)
T PRK09700 493 NRD 495 (510)
T ss_pred Ccc
Confidence 644
No 360
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.1e-36 Score=316.84 Aligned_cols=188 Identities=22% Similarity=0.388 Sum_probs=157.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +.++ ++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 689999999964 2344 599999999999999999999999999999999999999999999886532 34699
Q ss_pred EEecCCCC-ccccHHHHHhcCCCCC-CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 441 LVSQEPAL-FATSIKENILFGKEDA-SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 441 ~v~Q~~~l-~~~ti~eni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|++|++.+ +..|++||+.++.+.. ..+++.++++..++.++.. ..+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCC
Confidence 99998765 5679999998754321 2345556666666554433 345689999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHH-hCCCeEEEEecCcchhhcCCEE
Q 041277 519 RILLLDEATSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRNADVI 567 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~i 567 (1133)
+++||||||++||+.+++.+.+.+++. .+++|+|++||+++.++.||-+
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 999999999999999999999999754 4689999999999999999865
No 361
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=6.9e-36 Score=368.94 Aligned_cols=219 Identities=30% Similarity=0.468 Sum_probs=183.4
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH---
Q 041277 360 EVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL--- 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~--- 435 (1133)
.++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999996421 2458999999999999999999999999999999999999999999999999998876653
Q ss_pred -hhhceEEecCCCCccc-cHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 436 -RSQMGLVSQEPALFAT-SIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 436 -r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
|+.++|++|++.+|+. |+.||+.++.. ....++. ...+.+.++.+ |++..+...+.+||||||||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR-----LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 5689999999999975 99999986421 1111111 11122334433 344444555678999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
|||+++|+++||||||++||+.+++.+.+.++++. +++|+|++||+++.+..||++++|++|+++++|+.+|..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999998875 589999999999988889999999999999999999875
No 362
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3e-36 Score=364.47 Aligned_cols=218 Identities=18% Similarity=0.329 Sum_probs=174.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-CccEEEECCeecCCCCH-HHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-LGGEIILDGVSIDKLQL-KWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-~~G~i~~~g~~~~~~~~-~~~r~ 437 (1133)
-++++|++++|+...+..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999432123589999999999999999999999999999999999995 89999999999865443 45678
Q ss_pred hceEEecCC---CCcc-ccHHHHHhcCCCC-------CCHHHHHHHHHHhchHHHHHhCCCcccc-cccCCCCCCChHHH
Q 041277 438 QMGLVSQEP---ALFA-TSIKENILFGKED-------ASMEEVIEAAKASNAHNFIRQLPQQYDT-QVGERGVQMSGGQK 505 (1133)
Q Consensus 438 ~i~~v~Q~~---~l~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqk 505 (1133)
++|||+|++ .+++ .|++||+.++... ...++. ...+.+.++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-----LQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHH-----HHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 899999996 4665 4999999875310 011111 11122344443 2221 23445568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||++||||++.+|++|||||||++||+.+.+.+.+.++++. +|+|+|++||+++.+.. ||++++|++|+++..++.++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998864 58999999999999876 99999999999998776554
Q ss_pred h
Q 041277 584 L 584 (1133)
Q Consensus 584 l 584 (1133)
+
T Consensus 490 ~ 490 (500)
T TIGR02633 490 L 490 (500)
T ss_pred C
Confidence 3
No 363
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=9.1e-36 Score=337.52 Aligned_cols=183 Identities=34% Similarity=0.561 Sum_probs=154.8
Q ss_pred EEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHHHHHhcCCC--CCCH----
Q 041277 394 LVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFGKE--DASM---- 466 (1133)
Q Consensus 394 ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~---- 466 (1133)
|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++|++|++.+|+. |++||+.|+.. ....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999976654 35789999999999975 99999998642 1122
Q ss_pred HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh
Q 041277 467 EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546 (1133)
Q Consensus 467 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~ 546 (1133)
+++.++++..++.++.+ ....+||||||||++|||||+++|+++||||||++||+.+++.+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFAD-----------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhc-----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 23444555555544433 3446899999999999999999999999999999999999999999998874
Q ss_pred --CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 547 --VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 547 --~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
.++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+...
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~ 193 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPA 193 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 38999999999998765 99999999999999999999976433
No 364
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=9.5e-36 Score=359.53 Aligned_cols=211 Identities=20% Similarity=0.356 Sum_probs=173.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 438 (1133)
-++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 488999974 26999999999999999999999999999999999999999999999999876654 345678
Q ss_pred ceEEecCC---CCcc-ccHHHHHhcCCCC--------CCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHH
Q 041277 439 MGLVSQEP---ALFA-TSIKENILFGKED--------ASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQK 505 (1133)
Q Consensus 439 i~~v~Q~~---~l~~-~ti~eni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 505 (1133)
+|||||++ .++. .|++||+.++... ...++. ...+.++++.+ |+. ........+||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 3554 5999999875210 011111 11123444443 232 234556678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+.++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999999875 58999999999999876 99999999999999998877
Q ss_pred hc
Q 041277 584 LI 585 (1133)
Q Consensus 584 l~ 585 (1133)
+.
T Consensus 482 ~~ 483 (501)
T PRK10762 482 AT 483 (501)
T ss_pred CC
Confidence 63
No 365
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=358.91 Aligned_cols=212 Identities=22% Similarity=0.358 Sum_probs=172.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 438 (1133)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...++.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4889999742 28999999999999999999999999999999999999999999999999865443 345678
Q ss_pred ceEEecCCC---Ccc-ccHHHHHhcCCCCC--------CHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHH
Q 041277 439 MGLVSQEPA---LFA-TSIKENILFGKEDA--------SMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQK 505 (1133)
Q Consensus 439 i~~v~Q~~~---l~~-~ti~eni~~~~~~~--------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 505 (1133)
++|++|++. +|. .|+.||+.++.... ...+. ...+.++++.+ |++ ........+||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999973 665 69999998753210 11111 01123344443 221 223445568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +|.|+|++||+++.+.. ||++++|++|++++.|+++|
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998875 48999999999999865 99999999999999999887
Q ss_pred hc
Q 041277 584 LI 585 (1133)
Q Consensus 584 l~ 585 (1133)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 65
No 366
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.4e-36 Score=302.30 Aligned_cols=213 Identities=21% Similarity=0.453 Sum_probs=182.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.+++++|+++|++. .+++|+||++++|++.+++||||+||||.+++|+|+++|++|+|.++|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg~k---~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDK---KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCce---eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 47899999999854 49999999999999999999999999999999999999999999999998864 346689
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
||.|.+--|+.. ||.|-+.|-.. .....++.+ .+..+++++.- --.-..+..+||-|.+|+|-+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~i--~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLEI--VGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhccc--cccccchHHHhhhhhhHHHHHHHHHhc
Confidence 999999999975 99999987322 233333322 23456666532 112234556899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+|+++|||||+|+|||.+.+.+.+.+.+++ +|.|||+.||+++.++. ||+++.|++|+.|-+|+.+++.+
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 999999999999999999999999998875 69999999999999987 99999999999999999988865
No 367
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.9e-35 Score=290.88 Aligned_cols=208 Identities=25% Similarity=0.432 Sum_probs=174.5
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCC--cc-c
Q 041277 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPAL--FA-T 451 (1133)
Q Consensus 375 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l--~~-~ 451 (1133)
++++|+++|++|++|+++.|+|.||||||||++.|+|-..|++|+|.|||.|+..++.......++-|+|||-. +. .
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 46799999999999999999999999999999999999999999999999999999998888889999999953 54 4
Q ss_pred cHHHHHhcCCCC---CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc
Q 041277 452 SIKENILFGKED---ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528 (1133)
Q Consensus 452 ti~eni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 528 (1133)
||.||+.+.... .....-...-......+-+..+|.|++..++.+..-|||||||-++++.|.++.|+||+|||-|+
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 999999874221 11111111112223345578889999988888888999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHh--CCCeEEEEecCcchh-hcCCEEEEEeCCeEEeecCcc
Q 041277 529 ALDSESERVVQEALDKAV--VGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 529 ~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~ 582 (1133)
||||.+.+.+++.-.+.- .+-|.+||||+++.. ...+|.++|++|+|+-+-+-+
T Consensus 178 ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~ 234 (263)
T COG1101 178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234 (263)
T ss_pred cCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence 999999999988877653 367999999999875 558999999999999764433
No 368
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.6e-35 Score=317.66 Aligned_cols=193 Identities=22% Similarity=0.347 Sum_probs=155.3
Q ss_pred EEcCCCCCCccccceeEEee-----CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEE
Q 041277 368 FAYPSRPESIIFKDFCLTIP-----AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLV 442 (1133)
Q Consensus 368 ~~y~~~~~~~~l~~i~l~i~-----~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 442 (1133)
|+|++. .+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. +|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 567643 247889999887 69999999999999999999999999999999999984 59999
Q ss_pred ecCCCC-ccccHHHHHhcCCCCC--CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 443 SQEPAL-FATSIKENILFGKEDA--SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 443 ~Q~~~l-~~~ti~eni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
+|++.. ++.|++||+.+..... ..+...++++..++.+. ......+||||||||++|||||+.+|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQI-----------LDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999875 5789999997543211 11223444444444433 233456899999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEE--eecCcchhc
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM--ETGSHDELI 585 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~--~~g~~~~l~ 585 (1133)
++||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||+|++|+++..+ ..+++.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999999999999999999874 38999999999999886 9999999765433 445555543
No 369
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-35 Score=354.14 Aligned_cols=200 Identities=23% Similarity=0.341 Sum_probs=169.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +++
T Consensus 319 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDNG---PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 59999999999743 4899999999999999999999999999999999999999999999873 479
Q ss_pred eEEecCCC--Ccc-ccHHHHHhcCC-CCCCHHHHHHHHHHhchH-HHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 440 GLVSQEPA--LFA-TSIKENILFGK-EDASMEEVIEAAKASNAH-NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 440 ~~v~Q~~~--l~~-~ti~eni~~~~-~~~~~~~~~~~~~~~~~~-~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
||++|++. ++. .|++||+.+.. +....+++.+.++..++. +.. .....+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-----------KKSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-----------cCcccccCHHHHHHHHHHHHH
Confidence 99999974 443 59999987532 222344555666665542 222 234468999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEE-eecCcchhcc
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM-ETGSHDELIQ 586 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~ 586 (1133)
+.+|++|||||||++||+.+.+.+.+.|++. +.|+|+|||+++.+.. ||++++|++|+++ ..|+++++++
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 9999999999999999999999999999876 4599999999999876 9999999999998 7888887765
No 370
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=6.8e-35 Score=290.52 Aligned_cols=143 Identities=34% Similarity=0.587 Sum_probs=133.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGGK---LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECCc---eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 4789999999743 4899999999999999999999999999999999999999999999994 3699
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++| ||+||+||++||||++++|++
T Consensus 67 ~~~~-------------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 67 YFEQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEcc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 9999 999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
+||||||++||+.+...+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 5799999999999876 99999999986
No 371
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4e-35 Score=319.89 Aligned_cols=201 Identities=21% Similarity=0.260 Sum_probs=158.4
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEE-----------ECCeecCCCCH
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII-----------LDGVSIDKLQL 432 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~-----------~~g~~~~~~~~ 432 (1133)
.||+++|+.. ..+|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.+...
T Consensus 4 ~~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 3688999643 24899999 4999999999999999999999999999999999996 88888866533
Q ss_pred HHHhh--hceEEecCCCCccccHHHHHhcCCCCCC-HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 433 KWLRS--QMGLVSQEPALFATSIKENILFGKEDAS-MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 433 ~~~r~--~i~~v~Q~~~l~~~ti~eni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
...+. .++|++|++.+++.++.+|+........ .+++.++++..++ +......+.+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLEL-----------RHVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHH
Confidence 33332 4789999887776666666654321111 2334444444433 33344566789999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
||||++.+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++| +|++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 9999999999999999999999999999999998875 47999999999999885 9999999 46666544
No 372
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.3e-35 Score=352.49 Aligned_cols=212 Identities=19% Similarity=0.323 Sum_probs=172.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH-Hhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW-LRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 438 (1133)
-++++|+++ . +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 268 ~l~~~~l~~-----~---~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG-----E---GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC-----C---CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 488999983 1 599999999999999999999999999999999999999999999999998766554 4567
Q ss_pred ceEEecCC---CCccc-cHHHHHhcCC----CC-CCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHHHHH
Q 041277 439 MGLVSQEP---ALFAT-SIKENILFGK----ED-ASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 439 i~~v~Q~~---~l~~~-ti~eni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri 508 (1133)
|+|+||++ .+|.. |+.+|+.... .. ....+.. ..+.+.++.+ |+. ........+||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999986 36654 9999986321 10 0111111 1123344444 332 234555678999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||++++|++|+++..|+.+++..
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 99999999999999999999999999999999998874 58999999999999876 99999999999999999988764
No 373
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.1e-34 Score=309.45 Aligned_cols=185 Identities=19% Similarity=0.270 Sum_probs=150.5
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEE-ECCeecCCCCHHHHhhhceEEecCCCCccc-cHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII-LDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKE 455 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~-~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~e 455 (1133)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 777532 13356778875 9999
Q ss_pred HHhcCCC--CCCHHHHHHHH-HHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCCh
Q 041277 456 NILFGKE--DASMEEVIEAA-KASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532 (1133)
Q Consensus 456 ni~~~~~--~~~~~~~~~~~-~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~ 532 (1133)
|+.+... ....++..+.+ +.. .+++..++.+ ..||||||||++||||++.+|+++||||||+++|+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLT-------QLEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh-------ChhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 9987422 22333332222 222 2333333333 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 533 ESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 533 ~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
.+++.+.+.+.+..+++|+|++||+++.+.. ||++++|++|++++.|+.++..+
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 9999999988765567899999999999864 99999999999999998887754
No 374
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9.6e-35 Score=382.72 Aligned_cols=214 Identities=24% Similarity=0.404 Sum_probs=180.0
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC---CCccEEEECCeecCCCCHHHH
Q 041277 360 EVEFKCVQFAYPSR-PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA---PLGGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~---~~~G~i~~~g~~~~~~~~~~~ 435 (1133)
.++++|++++|+.+ .++.+|+|+|+++++||++||+||||||||||+++|+|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 37899999999632 23469999999999999999999999999999999999997 78899999999984 246
Q ss_pred hhhceEEecCCCCc-cccHHHHHhcCC----C-CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 436 RSQMGLVSQEPALF-ATSIKENILFGK----E-DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~-~~ti~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
|+.+|||+|++.++ ..||+||+.++. + ..+.+ ++.++++..++ .+-.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHh
Confidence 88899999987655 569999999752 1 12222 23444444443 33468889988889999999
Q ss_pred HHHHHHHHHhhCCC-EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchh--hcCCEEEEEeCC-eEEeecC
Q 041277 506 QRIAIARAIIKAPR-ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTI--RNADVIAVVQDG-QVMETGS 580 (1133)
Q Consensus 506 qri~iARal~~~~~-illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~--~~~d~i~~l~~G-~i~~~g~ 580 (1133)
||++|||||+.+|+ ||+||||||+||+.++..+++.|+++. +|+|+|+++|+++.. ..+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999874 689999999999963 569999999997 9999999
Q ss_pred cchh
Q 041277 581 HDEL 584 (1133)
Q Consensus 581 ~~~l 584 (1133)
..+.
T Consensus 988 ~~~~ 991 (1394)
T TIGR00956 988 LGEN 991 (1394)
T ss_pred cccc
Confidence 8654
No 375
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=268.56 Aligned_cols=195 Identities=29% Similarity=0.440 Sum_probs=167.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC---ccEEEECCeecCCCCHHHHh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~---~G~i~~~g~~~~~~~~~~~r 436 (1133)
.+.++||+.+-+++ ..|-|+||+|.+||++-|.||||||||||+.-+.|.+.++ +|++.+|++++..++.. +
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 36789999887754 4899999999999999999999999999999999999885 79999999999887765 5
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKED-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+++|+.+||++||+- +|.+|+.|..|. +.......|+++.+++.+..+.|+ +||||||.||++
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~-----------tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA-----------TLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh-----------hcCcchHHHHHH
Confidence 689999999999976 999999998662 334456677888888888888774 899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHH-H-hCCCeEEEEecCcchhhcCCEEEEE
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDK-A-VVGRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~-~-~~~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
-|+|+..|+.++||||+|.||..-+..+.+..-. . ..|..+|+|||+.+.+....||+-|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999988888887654 3 2488999999999988754555443
No 376
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.3e-34 Score=278.44 Aligned_cols=229 Identities=23% Similarity=0.416 Sum_probs=180.5
Q ss_pred EEEEEEEEEcCCC------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH
Q 041277 361 VEFKCVQFAYPSR------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~ 434 (1133)
++++|++++|..+ ....+.+.|||++++|+++||+|.||||||||.++|.|..+|++|+|++||+++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4566776665322 1234789999999999999999999999999999999999999999999999998777777
Q ss_pred HhhhceEEecCCCC-cc-----ccHHHH-HhcC---CCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 435 LRSQMGLVSQEPAL-FA-----TSIKEN-ILFG---KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l-~~-----~ti~en-i~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
..++|-+++|||.- |+ |+|.|- +.+. .+....+++.+.++.+|+. |+--+- ....||-||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~------Pdhan~----~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLL------PDHANY----YPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccC------cccccc----chhhcCchh
Confidence 77889999999952 32 233221 1111 1233456777778877763 432221 245899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
|||||+||||+-+|+|+|.||+..+||...+.++.+...++. .|..-|.|++++..+++ +|+|+||++|+++|.|++
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 999999999999999999999999999999999988877664 48899999999999998 999999999999999999
Q ss_pred chhccccc-hhhHHHHHhh
Q 041277 582 DELIQAES-GLYTSLVRLQ 599 (1133)
Q Consensus 582 ~~l~~~~~-~~~~~~~~~~ 599 (1133)
.+++..+. ..-+++++..
T Consensus 235 ~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 235 ADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhhcCCccHHHHHHHHHH
Confidence 99987443 3344555443
No 377
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-34 Score=346.61 Aligned_cols=213 Identities=20% Similarity=0.305 Sum_probs=169.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH-HHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK-WLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 438 (1133)
.|+++|++++| + ++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus 250 ~i~~~~l~~~~--~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR--Q---PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc--C---cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 58999999974 1 389999999999999999999999999999999999999999999999999776643 34677
Q ss_pred ceEEecCCC---Ccc-ccHHHH-----HhcCCCC---CCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHH
Q 041277 439 MGLVSQEPA---LFA-TSIKEN-----ILFGKED---ASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQK 505 (1133)
Q Consensus 439 i~~v~Q~~~---l~~-~ti~en-----i~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 505 (1133)
++|++|++. +|. .|+.+| +.+.... ...++..+ .+.+.++.+ |+. ........+||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcHHH
Confidence 999999963 565 377766 3321111 11111111 122334444 221 123556678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||++||||++.+|+||||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|+++..++.++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998864 58999999999999875 99999999999998877654
Q ss_pred h
Q 041277 584 L 584 (1133)
Q Consensus 584 l 584 (1133)
+
T Consensus 478 ~ 478 (491)
T PRK10982 478 T 478 (491)
T ss_pred C
Confidence 3
No 378
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2e-34 Score=347.61 Aligned_cols=207 Identities=22% Similarity=0.301 Sum_probs=164.8
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-CccEEEECCeecCC-CCHHHHh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-LGGEIILDGVSIDK-LQLKWLR 436 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-~~G~i~~~g~~~~~-~~~~~~r 436 (1133)
.-++++|++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+....|
T Consensus 259 ~~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYNDR---PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECCe---eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 359999999999743 489999999999999999999999999999999998876 69999999987632 2334467
Q ss_pred hhceEEecCCCCcc---ccHHHHHhcCCC-------CCC---HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 437 SQMGLVSQEPALFA---TSIKENILFGKE-------DAS---MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~---~ti~eni~~~~~-------~~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
++|+|++|++.++. .++++++.++.. ... .+++.++++..++.+. .......+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG 405 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWG 405 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHH
Confidence 78999999986642 367777654311 011 1233444444444320 223344689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CC-CeEEEEecCcchhhc--CCEEEEEeCCeEEee
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VG-RTTIIIAHRLSTIRN--ADVIAVVQDGQVMET 578 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~-~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~ 578 (1133)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. ++ .|+|++||+++.+.. ||++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999999875 34 469999999999863 899999999999864
No 379
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-31 Score=279.93 Aligned_cols=380 Identities=18% Similarity=0.245 Sum_probs=286.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHH
Q 041277 722 YAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTA 801 (1133)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~ 801 (1133)
++..++++.++..+.+.+.......++++...++|.++.++++..|+.-++ +-.+++++.++++|+..|. +-...++
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~IS-f~~s~lp 126 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNIS-FAFSRLP 126 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhccccccee-ehHhhhH
Confidence 444556666666677778888889999999999999999999999999998 4689999999999999998 6667788
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchH
Q 041277 802 LLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQH 881 (1133)
Q Consensus 802 ~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~ 881 (1133)
.+.++.+.++++...+.+.++++.+++++++.+.++..++.+.+..+..+..++...++.++.+-.++|-+..+......
T Consensus 127 ~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~ 206 (546)
T COG4615 127 ELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERA 206 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHH
Confidence 89999999999999999999999999998888888888888877777788888888999999999999999988764322
Q ss_pred H--HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 041277 882 R--ILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAG 959 (1133)
Q Consensus 882 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~ 959 (1133)
+ +.++|...-+..++...+..........+.+.+......+++|+.... +.-+......+.+.+.+...|+.++.
T Consensus 207 ~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~v 283 (546)
T COG4615 207 EYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAV 283 (546)
T ss_pred HHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHH
Confidence 2 223333322222222222222211223344444455555555554433 22222233445566667788999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCC
Q 041277 960 SMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQS 1039 (1133)
Q Consensus 960 ~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~S 1039 (1133)
...+.+..+.++..+|.++-..++..+ -+.....|+. -.||++||.|+|++. .--+.-||++|+.||.|=|+|.+
T Consensus 284 gilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 284 GILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred hhhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCC
Confidence 999999999999999998865332211 1111111222 369999999999743 23468899999999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHc
Q 041277 1040 GSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAA 1118 (1133)
Q Consensus 1040 GSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a 1118 (1133)
||||||+++||.|+|.|++|+|++||.+++.=++++.|+-+|-|+-|-+||+.++ |....++.+.+..-++.-
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrL 431 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRL 431 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999865 322225666665554443
No 380
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-33 Score=289.39 Aligned_cols=211 Identities=26% Similarity=0.394 Sum_probs=172.1
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRS 437 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~ 437 (1133)
.-|+++||+++|.++ ++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|+....-+. .++|+
T Consensus 30 ~li~l~~v~v~r~gk---~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRNGK---KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEECCE---eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 459999999999754 49999999999999999999999999999999999999999999999999987776 89999
Q ss_pred hceEEecCCC---CccccHHHHHhcCC------C--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 438 QMGLVSQEPA---LFATSIKENILFGK------E--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 438 ~i~~v~Q~~~---l~~~ti~eni~~~~------~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
+||+|+-+-. .-+.+++|-+.-|. . ..+.++..++. ..++.+ |.....++.-..||-||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~------~lle~~--g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQ------WLLELL--GAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHH------HHHHHc--chhhhccCchhhcCHhHHH
Confidence 9999986432 22457888776432 1 23333332221 112222 2223334445689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC---CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV---GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~---~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
|+-|||||+++|++||||||+++||...++.+.+.+.++.. +.|+|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999999999999999999988752 6799999999999876 69999999999998874
No 381
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-33 Score=289.13 Aligned_cols=152 Identities=24% Similarity=0.356 Sum_probs=134.8
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEe
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 443 (1133)
.|++++|++. .++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~~~~---~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGVF---FLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECCE---EEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 5789999643 47888 49999999999999999999999999999999999999999953 78999
Q ss_pred cCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 041277 444 QEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLL 523 (1133)
Q Consensus 444 Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illl 523 (1133)
|++. ||||||||++||||++.+|++++|
T Consensus 68 q~~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 68 QYID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred ccCC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8653 999999999999999999999999
Q ss_pred eCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEee--cCcch
Q 041277 524 DEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMET--GSHDE 583 (1133)
Q Consensus 524 DE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~--g~~~~ 583 (1133)
||||++||+++++.+.+.+.+.. + ++|+|++||+++.+.. ||++++|+++-.+.+ |.+..
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 99999999999999999998864 4 4899999999999885 999999998866533 55543
No 382
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-33 Score=283.91 Aligned_cols=154 Identities=44% Similarity=0.688 Sum_probs=143.9
Q ss_pred EEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEE
Q 041277 363 FKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLV 442 (1133)
Q Consensus 363 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 442 (1133)
++|++|+|++. ++++++||++++|++++|+||||||||||+++|.|+++|++|+|.++|.++.+.....+++.++|+
T Consensus 2 ~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 68999999753 489999999999999999999999999999999999999999999999999877677778889999
Q ss_pred ecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 041277 443 SQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILL 522 (1133)
Q Consensus 443 ~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ill 522 (1133)
+| ||||||||++||||++.+|++++
T Consensus 79 ~q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 79 PQ-------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred ee-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 99 99999999999999999999999
Q ss_pred EeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 523 LDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 523 lDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
|||||++||++++..+.+.+.+..+ ++|++++||+++.+.. ||+++++++|+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999988654 6899999999999987 79999999975
No 383
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.7e-33 Score=340.33 Aligned_cols=202 Identities=24% Similarity=0.356 Sum_probs=163.3
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
.-++++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++ +
T Consensus 323 ~~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~ 388 (556)
T PRK11819 323 KVIEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------K 388 (556)
T ss_pred eEEEEEeEEEEECCe---eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------E
Confidence 359999999999743 499999999999999999999999999999999999999999999954 21 5
Q ss_pred ceEEecCC-CCcc-ccHHHHHhcCCCCC----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 439 MGLVSQEP-ALFA-TSIKENILFGKEDA----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 439 i~~v~Q~~-~l~~-~ti~eni~~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||+||++ .++. .|++||+.++.... ...+..++++..++.+ ........+||||||||++|||
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~ 458 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG----------GDQQKKVGVLSGGERNRLHLAK 458 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHH
Confidence 99999997 5665 49999998764211 1122223333333211 1123345689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeC-CeEE-eecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQD-GQVM-ETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~~ 586 (1133)
|++.+|++|||||||++||+.+...+.+.|.+.. .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++++
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 9999999999999999999999999999998863 489999999998876 999999996 7876 4677766654
No 384
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4e-33 Score=340.12 Aligned_cols=202 Identities=23% Similarity=0.350 Sum_probs=162.3
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..++++|++++|+++ .+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ ++ +
T Consensus 321 ~~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~ 386 (552)
T TIGR03719 321 KVIEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------K 386 (552)
T ss_pred eEEEEeeEEEEECCe---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------E
Confidence 359999999999743 499999999999999999999999999999999999999999999954 21 5
Q ss_pred ceEEecCCC-Ccc-ccHHHHHhcCCCC--CC--HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 439 MGLVSQEPA-LFA-TSIKENILFGKED--AS--MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 439 i~~v~Q~~~-l~~-~ti~eni~~~~~~--~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||++|++. ++. .|++||+.++... .. ..+..+.++..++.+ ........+||||||||++|||
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG----------SDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHH
Confidence 999999973 564 4999999886431 11 112222333333211 1123445689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeC-CeEE-eecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQD-GQVM-ETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~~ 586 (1133)
|++.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|||+++.+.. ||+|++|++ |++. ..|+.++..+
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999999999999999999998873 489999999999876 999999997 5876 4566665543
No 385
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.4e-31 Score=347.28 Aligned_cols=215 Identities=25% Similarity=0.393 Sum_probs=176.5
Q ss_pred ccEEEEEEEEEcCCC----------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC--CccEEEECCee
Q 041277 359 GEVEFKCVQFAYPSR----------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP--LGGEIILDGVS 426 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~----------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~--~~G~i~~~g~~ 426 (1133)
..+.++||++..+.. ..+.+|+|+|+++++|+++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 368999999987532 123699999999999999999999999999999999999763 78999999987
Q ss_pred cCCCCHHHHhhhceEEecCCCCccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 427 IDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFGK----E-DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 427 ~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
..+ ...++.+|||+|++.+++. ||+||+.|+. + ..+.+ .+.+.++..++.+. .++.+|..
T Consensus 946 ~~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~ 1015 (1470)
T PLN03140 946 KKQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLP 1015 (1470)
T ss_pred CCh---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCC
Confidence 642 3466789999999888764 9999998742 1 12222 24455555555432 35666654
Q ss_pred C-CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcch-h-hcCCEEEEEeC
Q 041277 497 G-VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST-I-RNADVIAVVQD 572 (1133)
Q Consensus 497 g-~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l~~ 572 (1133)
+ ..||||||||++|||||+.+|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + ..+|++++|++
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1095 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcC
Confidence 3 5799999999999999999999999999999999999999999999875 58999999999984 4 56999999996
Q ss_pred -CeEEeecCcch
Q 041277 573 -GQVMETGSHDE 583 (1133)
Q Consensus 573 -G~i~~~g~~~~ 583 (1133)
|+++..|+..+
T Consensus 1096 gG~~v~~G~~~~ 1107 (1470)
T PLN03140 1096 GGQVIYSGPLGR 1107 (1470)
T ss_pred CCEEEEECCccc
Confidence 89999998754
No 386
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.7e-33 Score=338.17 Aligned_cols=194 Identities=22% Similarity=0.281 Sum_probs=163.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-++++|++++|++ ..|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++ + ++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eE
Confidence 4899999999963 25999999999999999999999999999999999999999999986 1 59
Q ss_pred eEEecCCCCc-cccHHHHHhcCCCCCC-HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 440 GLVSQEPALF-ATSIKENILFGKEDAS-MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 440 ~~v~Q~~~l~-~~ti~eni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
+|+||++.++ +.|++||+.++..... ...+.++++..++.+..++ ...+||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----------~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDK-----------NVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhC-----------CcccCCHHHHHHHHHHHHHhcC
Confidence 9999998764 5699999987532222 2334556666666544433 3458999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
|++|||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||++++|++ ++...|+..
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~~ 538 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHAS 538 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeecC
Confidence 99999999999999999999999999874 37999999999999876 999999965 887777633
No 387
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=274.70 Aligned_cols=213 Identities=23% Similarity=0.424 Sum_probs=182.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC-eecCCCCHHHH-hh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG-VSIDKLQLKWL-RS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g-~~~~~~~~~~~-r~ 437 (1133)
.++++||+.+|++- .+|+|+||++.+||.-+|+||||+||||++..|.|-.+|+.|+++++| .|+..++...+ |.
T Consensus 5 iL~~~~vsVsF~GF---~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGGF---KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcce---eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 47889999999854 389999999999999999999999999999999999999999999999 99999988776 45
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCCC--------------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKED--------------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~~--------------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
.||-=+|.|..|.. ||+||+.+.... ...+++.+.+...++.+- ...-...||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~-----------~~~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE-----------RDRLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh-----------hhhhhhhhcc
Confidence 69999999999976 999999875321 112245555555544432 2233458999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
||||++.|+.-++++|++|+||||++++-.+.....-+.++.+..++++++|.||+.+++. ||+|-||+.|.+..+|+.
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999777777778888888889999999999999987 999999999999999999
Q ss_pred chhcc
Q 041277 582 DELIQ 586 (1133)
Q Consensus 582 ~~l~~ 586 (1133)
+++.+
T Consensus 231 d~v~~ 235 (249)
T COG4674 231 DEVQN 235 (249)
T ss_pred HHhhc
Confidence 99865
No 388
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-33 Score=343.03 Aligned_cols=199 Identities=28% Similarity=0.399 Sum_probs=162.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5899999999974 34999999999999999999999999999999999999999999999741 269
Q ss_pred eEEecCC--CCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 440 GLVSQEP--ALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 440 ~~v~Q~~--~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
||++|++ .+.. .|+.+++....+....+++.+.++..++.. .........||||||||++||||++.
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999985 3443 488888752122222334444444444321 11223345899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEE-eecCcchh
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM-ETGSHDEL 584 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l 584 (1133)
+|++|||||||++||+.+...+.+.|.+. . .|+|+|||++..+.. ||+|++|++|+++ ..|++++.
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 99999999999999999999999999887 3 499999999999876 9999999999997 67877765
No 389
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6.8e-33 Score=341.39 Aligned_cols=200 Identities=25% Similarity=0.393 Sum_probs=161.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
.-++++|++++|++. +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 358999999999642 2489999999999999999999999999999999999999999999875 236
Q ss_pred ceEEecCCCCccccHHHHHhc----CCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 439 MGLVSQEPALFATSIKENILF----GKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~----~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
|||++|++. ...++.+|..+ ..+....+++.++++..++.+.. ......+||||||||++||||+
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHH
Confidence 999999873 22345455321 11233456666666666654211 1223468999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEE-eecCcchh
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM-ETGSHDEL 584 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l 584 (1133)
+.+|++|||||||++||+.+...+.+.+.+. + .|+|+|||++..+.. ||++++|++|+++ ..|++++.
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999998888765 3 499999999999876 9999999999998 56776554
No 390
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-32 Score=276.55 Aligned_cols=214 Identities=28% Similarity=0.417 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc--cCCCccEEEECCeecCCCCHHHH-h
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAPLGGEIILDGVSIDKLQLKWL-R 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~--~~~~~G~i~~~g~~~~~~~~~~~-r 436 (1133)
.++++|++.+-.++ +.+|+++||+|++||+.+|.||||||||||.+.|+|. |++++|+|.+||+||.++++++. |
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 47899999988643 3599999999999999999999999999999999997 79999999999999999998765 5
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCCC---------CCHHHHHHHHHHhchHH-HHHhCCCcccccccCCCCCCChHHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKED---------ASMEEVIEAAKASNAHN-FIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~~---------~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..|.+.+|.|.=++| |+.+-+..+... ...+++.++++..++++ |+++ .++ ..+|||+|
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R-------~vN---~GFSGGEk 150 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER-------YVN---EGFSGGEK 150 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc-------ccC---CCcCcchH
Confidence 569999999999988 888887753211 12456667777777766 3322 233 36999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc--CCEEEEEeCCeEEeecCcc
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN--ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~ 582 (1133)
.|.-|+.+++.+|++.|||||-|+||..+-+.+-+.+..++ +++++++|||.-..+.+ .|++.||-+|+|+..|.+
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~- 229 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP- 229 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-
Confidence 99999999999999999999999999999999999999876 58999999999888876 599999999999999999
Q ss_pred hhcc
Q 041277 583 ELIQ 586 (1133)
Q Consensus 583 ~l~~ 586 (1133)
||..
T Consensus 230 el~~ 233 (251)
T COG0396 230 ELAE 233 (251)
T ss_pred HHHH
Confidence 7754
No 391
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=9.1e-33 Score=341.33 Aligned_cols=199 Identities=24% Similarity=0.412 Sum_probs=160.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDGK---QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECCe---EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 48999999999743 4899999999999999999999999999999999999999999998 5332 59
Q ss_pred eEEecCC-CCccc-cHHHHHhcCCCCC--C--HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 440 GLVSQEP-ALFAT-SIKENILFGKEDA--S--MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 440 ~~v~Q~~-~l~~~-ti~eni~~~~~~~--~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
||++|++ .+++. |+.||+.++.+.. . ..++.+.++..++.. .........||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP----------KRAMTPVKALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH----------HHHhChhhhCCHHHHHHHHHHHH
Confidence 9999986 46554 9999998754321 1 222333333333211 11223345899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEe-CCeEEe-ecCcchh
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQ-DGQVME-TGSHDEL 584 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~-~G~i~~-~g~~~~l 584 (1133)
++.+|++|||||||++||+.+...+.+.+++. +.|+|+|||+.+.+.. ||+|++++ +|++.+ .|++++.
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999999999999876 4599999999999876 99999998 899876 4555543
No 392
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.5e-32 Score=279.08 Aligned_cols=156 Identities=25% Similarity=0.385 Sum_probs=128.2
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHH
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKE 455 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 455 (1133)
.++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. ... .++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 46899999999999999999999999999999986 368999998752 111 1345888887
Q ss_pred HHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC--CCEEEEeCcccCCChH
Q 041277 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA--PRILLLDEATSALDSE 533 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~--~~illlDE~ts~lD~~ 533 (1133)
.++ ++.++-+.. ...++..+||||||||++||||++++ |+++||||||++||++
T Consensus 68 --------------~~~---------l~~~~L~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~ 123 (176)
T cd03238 68 --------------LQF---------LIDVGLGYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123 (176)
T ss_pred --------------HHH---------HHHcCCCcc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH
Confidence 122 233321111 24556779999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 534 SERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 534 ~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
+.+.+.+.+++.. .|+|+|++||+++.+..||++++|++|+.
T Consensus 124 ~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 124 DINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 9999999998865 58999999999999888999999977544
No 393
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=7.6e-31 Score=320.63 Aligned_cols=208 Identities=25% Similarity=0.378 Sum_probs=167.3
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC---CccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP---LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT- 451 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~---~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 451 (1133)
..+|+|+|.-++||+.+.+.||.|||||||+++++|-.+- ..|+|..||++.++... ++.++|++|+...+..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3589999999999999999999999999999999998754 25799999999988765 6789999999888865
Q ss_pred cHHHHHhcCC----CCCCHHHHHHHHHHhchHH---HHHhCCCcccccccCCC-CCCChHHHHHHHHHHHHhhCCCEEEE
Q 041277 452 SIKENILFGK----EDASMEEVIEAAKASNAHN---FIRQLPQQYDTQVGERG-VQMSGGQKQRIAIARAIIKAPRILLL 523 (1133)
Q Consensus 452 ti~eni~~~~----~~~~~~~~~~~~~~~~~~~---~i~~l~~g~~t~~~~~g-~~LSgGqkqri~iARal~~~~~illl 523 (1133)
||||-+.|.. +....+++.+-.+.+...| -+-.|.+..||.||.+. ...|||||.||++|-+++.+|+++.+
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 9999998842 1111111111111111112 13345667899999864 46899999999999999999999999
Q ss_pred eCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcc--hhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 524 DEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLS--TIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 524 DE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+|.+||..|.-++.+++++..+ +.|.++.-|+.+ +....|+|++|.+|+++.+|+.++.+.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999998753 788888888875 456699999999999999999988764
No 394
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.2e-31 Score=255.92 Aligned_cols=227 Identities=26% Similarity=0.437 Sum_probs=181.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC-----eecCCCCHHH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG-----VSIDKLQLKW 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g-----~~~~~~~~~~ 434 (1133)
-++++++++.|++.. -.+|+||++.|||..+|||+||||||||+++|.+-+.|+.|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~~---gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPGK---GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCCc---CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 478899999998653 68999999999999999999999999999999999999999999865 3333444333
Q ss_pred ----HhhhceEEecCCC--C-cc----ccHHHHHh-cCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 435 ----LRSQMGLVSQEPA--L-FA----TSIKENIL-FGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 435 ----~r~~i~~v~Q~~~--l-~~----~ti~eni~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
+|-.-|+|.|+|. | .. +.|-|-+. .|. ..+-++... +.+++++..- ..+.+.+.+.++||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~--RHYG~iR~~-----a~~WL~~VEI-~~~RiDD~PrtFSG 154 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA--RHYGNIRAE-----AQDWLEEVEI-DLDRIDDLPRTFSG 154 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhh--hhhhhHHHH-----HHHHHHhccc-CcccccCcccccch
Confidence 3456899999994 1 11 23433332 122 123333322 2356655432 34567778889999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|++||+-|||-|+..|+++++||||.+||...+..+.+.++.+-. +-.+++|||++..++- +||.+||++|+++|.|
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 999999999999999999999999999999999999999988743 7899999999999986 9999999999999999
Q ss_pred CcchhccccchhhHHHHH
Q 041277 580 SHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~ 597 (1133)
-.+.++..+...|.++.-
T Consensus 235 LTDrvLDDP~hPYTQLLV 252 (258)
T COG4107 235 LTDRVLDDPHHPYTQLLV 252 (258)
T ss_pred cccccccCCCCchHHHHH
Confidence 999999878888988754
No 395
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.4e-31 Score=274.54 Aligned_cols=188 Identities=30% Similarity=0.439 Sum_probs=156.0
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCc--ccc
Q 041277 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF--ATS 452 (1133)
Q Consensus 375 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~--~~t 452 (1133)
..++|+||||++++||.+||||+||||||||+++|+|.|+|++|+|.++|. ++....-..=| +.|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------------v~~li~lg~Gf~pelT 105 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------------VAPLIELGAGFDPELT 105 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------------EehhhhcccCCCcccc
Confidence 346999999999999999999999999999999999999999999999994 33222222223 248
Q ss_pred HHHHHhc-----CCC-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCc
Q 041277 453 IKENILF-----GKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEA 526 (1133)
Q Consensus 453 i~eni~~-----~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ 526 (1133)
-||||.+ |.. ..-++.+.+..+-+++.+|++. | ..+.|.|++-|+++|-|.-.+|+|||+||.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-P----------vktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-P----------VKTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-c----------hhhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 9999976 221 1123344556666777777754 3 258999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHH-hCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 527 TSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 527 ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
.|..|+.=.++=.+.+.+. .+++|+|+|||+++.+++ ||++++|++|+|...|++++..+
T Consensus 175 lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 175 LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999999877777777776 678999999999999987 99999999999999999999875
No 396
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=7.4e-30 Score=284.59 Aligned_cols=221 Identities=22% Similarity=0.332 Sum_probs=141.9
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEE--CCeecCCCCHHHHh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL--DGVSIDKLQLKWLR 436 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~--~g~~~~~~~~~~~r 436 (1133)
..+.++|++++|.+. .+++|..|++.+|+.+||+|+|||||||+|++|.|-..|..-.+-+ -..++..-....+.
T Consensus 74 ~dvk~~sls~s~~g~---~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 74 RDVKIESLSLSFHGV---ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred ccceeeeeeeccCCc---eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 468999999999754 4899999999999999999999999999999999987775443321 11111100000000
Q ss_pred hhceEEecCCCCccccHHHHHhcCCCCCCH---HHHHHHHHHhchH-------HHHHhCCCc-ccccccCCCCCCChHHH
Q 041277 437 SQMGLVSQEPALFATSIKENILFGKEDASM---EEVIEAAKASNAH-------NFIRQLPQQ-YDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~---~~~~~~~~~~~~~-------~~i~~l~~g-~~t~~~~~g~~LSgGqk 505 (1133)
.-+-.+.++..=. .--.|++.-..++... +++.+-+...+.+ ..+..+ | ........-.+||||||
T Consensus 151 ~v~~~~~~e~~rl-e~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl--gf~~~m~~k~~~~~SgGwr 227 (614)
T KOG0927|consen 151 AVVMETDHERKRL-EYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL--GFLSEMQDKKVKDLSGGWR 227 (614)
T ss_pred HHhhhhHHHHHHH-HHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc--CCCHhHHHHHhhccCchHH
Confidence 0000000000000 0001111111111000 1111111111111 111111 1 12233345578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCe-EEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQ-VMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~-i~~~g~~~~ 583 (1133)
.|++|||||..+|++|||||||++||.++..-+.+.|.+.... ++++++|.-+++.. |.+|+.|++++ +..+|++++
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHHH
Confidence 9999999999999999999999999999999999988876443 89999999999987 99999999999 667777766
Q ss_pred hcc
Q 041277 584 LIQ 586 (1133)
Q Consensus 584 l~~ 586 (1133)
...
T Consensus 307 y~~ 309 (614)
T KOG0927|consen 307 YVK 309 (614)
T ss_pred Hhh
Confidence 654
No 397
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.97 E-value=1.6e-27 Score=263.29 Aligned_cols=432 Identities=15% Similarity=0.185 Sum_probs=279.3
Q ss_pred HHHHHHHHHHHHHHHhCC---chhhccCCCChhHHH---HHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 110 RQATRMRARYLKAVLRQD---VGYFDLHVTSTAEVI---TSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWR 183 (1133)
Q Consensus 110 ~~~~~lr~~~~~~ll~~~---~~~f~~~~~~~G~l~---~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1133)
+.+-..|.++.+|+.++= ..||.. .+.-|.+- +++|+|+....+...+...++...++-++.+-+.+.-.+-.
T Consensus 183 klaLafrtrL~~h~y~~Y~snqTyY~V-sn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s 261 (728)
T KOG0064|consen 183 KLALAFRTRLTRHAYDMYLSNQTFYKV-SNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATS 261 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhccCceEEE-ecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcc
Confidence 344455666666655431 144432 11233333 57999999999888887777766655443332222211111
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 041277 184 LA----IVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGL 259 (1133)
Q Consensus 184 l~----l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 259 (1133)
.. .+....+.+-..+.+.+..++.++..+.....+.+...-+-.++|-+.|..|+..+.+.++.++..+.......
T Consensus 262 ~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~ 341 (728)
T KOG0064|consen 262 VGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMN 341 (728)
T ss_pred ccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 11 11111111222233444555566666666667777888888999999999999999999888877766554433
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------------hcCc-------c-HHHHHHHHHHHHHHHHHHHHHH
Q 041277 260 KQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVM------------YHGA-------Q-GGTVFAVGASIAVGGLALGAGL 318 (1133)
Q Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~------------~~~~-------t-~g~~~~~~~~~~~~~~~~~~~~ 318 (1133)
.......+..- -++++ =..|-|.-+++ .+.. + ...+.+.=-.+...+.++..+.
T Consensus 342 li~k~r~~YiMleqF~m-----KYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlM 416 (728)
T KOG0064|consen 342 LIFKVRLWYIMLEQFVM-----KYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLM 416 (728)
T ss_pred HHHHHHHHHHHHHHHHH-----HHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111111 11111 11222222221 1111 0 1111111123334455667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc---C----------CCCCCCC-----Ccccccc-----cccccEEEEEEEEEcCCCCC
Q 041277 319 PNLKYFSEAMAAGERIMEMIKR---V----------PKIDSDS-----MEGEILE-----NVLGEVEFKCVQFAYPSRPE 375 (1133)
Q Consensus 319 ~~~~~~~~~~~a~~ri~~~l~~---~----------~~~~~~~-----~~~~~~~-----~~~~~i~~~~v~~~y~~~~~ 375 (1133)
.....+++-..-..|+++.++. . ++..+.. .++.+.+ .....|.++||-.--|...
T Consensus 417 ssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~- 495 (728)
T KOG0064|consen 417 SSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGD- 495 (728)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcc-
Confidence 7777788877888888765421 1 0100000 0000000 1123589999988877542
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHH
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKE 455 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 455 (1133)
.+...+||+|++|-.+.|.||||||||+|.+.|.|++|...|...+-- +.+|-|+||.|+.--||.||
T Consensus 496 -vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRD 563 (728)
T KOG0064|consen 496 -VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRD 563 (728)
T ss_pred -eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCcccc
Confidence 478999999999999999999999999999999999999888776532 23699999999988889999
Q ss_pred HHhcCCC-------CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc
Q 041277 456 NILFGKE-------DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528 (1133)
Q Consensus 456 ni~~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 528 (1133)
-|.|+.. ..++.+++..++.+.++..++ -..|.|....- -.-||||+|||+++||.++++|+.-+|||+||
T Consensus 564 QIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~q-r~~g~da~~dW-kd~LsgGekQR~~mARm~yHrPkyalLDEcTs 641 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQ-REGGWDAVRDW-KDVLSGGEKQRMGMARMFYHRPKYALLDECTS 641 (728)
T ss_pred eeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHH-hccChhhhccH-HhhccchHHHHHHHHHHHhcCcchhhhhhhhc
Confidence 9998642 567888999999999876554 45566654433 24699999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcC
Q 041277 529 ALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNA 564 (1133)
Q Consensus 529 ~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~ 564 (1133)
|+.++.|..+.++.++. |-+.|-||||++..+.-
T Consensus 642 AvsidvE~~i~~~ak~~--gi~llsithrpslwk~h 675 (728)
T KOG0064|consen 642 AVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYH 675 (728)
T ss_pred ccccchHHHHHHHHHhc--CceEEEeecCccHHHHH
Confidence 99999999999888764 88999999999887643
No 398
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.3e-30 Score=316.39 Aligned_cols=218 Identities=31% Similarity=0.466 Sum_probs=180.3
Q ss_pred ccEEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC---CccEEEECCeecCCCCHH
Q 041277 359 GEVEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP---LGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~---~~G~i~~~g~~~~~~~~~ 433 (1133)
-.++++|++..-++.. .+.+|+|||.+++|||+.||.||||||||||+++|+|-.+. .+|+|++||+. .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence 4688999988876542 46799999999999999999999999999999999999875 78999999943 4566
Q ss_pred HHhhhceEEecCCCCccc-cHHHHHhcCC----CC-CCHH----HHHHHHHHhchHHHHHhCCCcccccccC-CCCCCCh
Q 041277 434 WLRSQMGLVSQEPALFAT-SIKENILFGK----ED-ASME----EVIEAAKASNAHNFIRQLPQQYDTQVGE-RGVQMSG 502 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~-ti~eni~~~~----~~-~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSg 502 (1133)
.+++..|||.||..+++. ||+|++.|.. |. .+.+ .+.+..+..++.+ =-||.+|. ....+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~-------~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK-------CADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh-------hccceecCCCCCcccc
Confidence 788899999999998876 9999998742 21 1222 3333333333321 14677764 3357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcch-h-hcCCEEEEEeCCeEEeec
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST-I-RNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l~~G~i~~~g 579 (1133)
|||+|++||.-++.||+||+||||||+||+.+...+.+.|+++. +|||||+.=|+++. + ...|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999875 59999999999974 3 559999999999999999
Q ss_pred Ccchhcc
Q 041277 580 SHDELIQ 586 (1133)
Q Consensus 580 ~~~~l~~ 586 (1133)
+++++.+
T Consensus 254 ~~~~~~~ 260 (613)
T KOG0061|consen 254 SPRELLE 260 (613)
T ss_pred CHHHHHH
Confidence 9987753
No 399
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=267.69 Aligned_cols=202 Identities=24% Similarity=0.397 Sum_probs=154.0
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEe-cCCCCccc-cHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS-QEPALFAT-SIK 454 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~l~~~-ti~ 454 (1133)
++.+||||+|++|++++++||||+||||++|+|.|+..|++|.|.++|.+-.+-..+.+ +++++|. |...+.-+ -+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~-~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYL-RSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHH-HHHHHHhhhhheeeeechhh
Confidence 47899999999999999999999999999999999999999999999988765333333 4565553 33322211 122
Q ss_pred HHHhcCC--CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCCh
Q 041277 455 ENILFGK--EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532 (1133)
Q Consensus 455 eni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~ 532 (1133)
|-+.... .+..+++..+-. +.+.+-| +++..+......||-|||.|.-||-||+++|+||+|||||=+||.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~-----~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERL-----DFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHH-----HHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 2222110 022233322211 1112221 244445555678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 533 ESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 533 ~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
..+..+.+.+++.. ++.||++.||.++.+.. ||||+++++|+++..|+.++|.+
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 99999999998763 58999999999999876 99999999999999999999865
No 400
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=4.4e-30 Score=255.25 Aligned_cols=136 Identities=40% Similarity=0.714 Sum_probs=121.1
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHHHHH
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENI 457 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eni 457 (1133)
|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|.++...+...+++.++|++|++.++.+ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999999999998888999999999999999987 69999
Q ss_pred hcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc
Q 041277 458 LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528 (1133)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 528 (1133)
...+++.++++..++.+ ..++.++.++..||||||||++||||++++|+++||||||+
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 22445666666655433 34667777888999999999999999999999999999996
No 401
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-29 Score=245.40 Aligned_cols=188 Identities=23% Similarity=0.422 Sum_probs=157.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++.+|++..-+ +..++.++||++.+||.+-|.||||||||||+++|+|+.+|++|+|+++|.+++... +..++..-
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 34566665544 345899999999999999999999999999999999999999999999999887654 33466788
Q ss_pred EEecCCCCccc-cHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 441 LVSQEPALFAT-SIKENILFGKE---DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
|+.-.+-+=.. |+.||+.|-.. ..+.+.+++|+..+++.++ +.+|- .+||-|||+|+||||-.+.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp~----------~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLPV----------GQLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccch----------hhcchhHHHHHHHHHHHcC
Confidence 88888877654 99999998543 1356789999999998764 44553 3799999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHH-hCCCeEEEEecCcchhhc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRN 563 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~ 563 (1133)
.+|+.|||||+++||.+....+...+... .+|-.||..||..--+..
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 99999999999999999999999988765 468899999998765543
No 402
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=6.5e-28 Score=284.03 Aligned_cols=203 Identities=29% Similarity=0.420 Sum_probs=169.2
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
+.-++++|++++|++. +.+++++||.|.+|+.+||+||||+|||||+++|+|...|.+|+|.+.-. +
T Consensus 319 ~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v---------- 385 (530)
T COG0488 319 KLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V---------- 385 (530)
T ss_pred CeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------
Confidence 3458999999999753 46899999999999999999999999999999999999999999987542 2
Q ss_pred hceEEecCC-CCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 438 QMGLVSQEP-ALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 438 ~i~~v~Q~~-~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
++||.+|+. .++. .|+.|++.-..++..+.++...+...+....-. ......||||||-|+.+|+.++
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred EEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhc
Confidence 699999987 4443 499999987665555667777776665433221 2234579999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEee-cCcchhcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMET-GSHDELIQ 586 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~-g~~~~l~~ 586 (1133)
.+|.+|||||||+.||.++...+.++|... .-|+|+||||..++.. |++|+.+++ ++... |++++..+
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999999999999999999999876 4699999999999987 999999998 66655 66666543
No 403
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=1.3e-28 Score=264.86 Aligned_cols=191 Identities=21% Similarity=0.309 Sum_probs=126.3
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHH-HHHHhccCCCccEEEECC-------eecCCC---CHHHHh-hhceEEe
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVI-ALLQRFYAPLGGEIILDG-------VSIDKL---QLKWLR-SQMGLVS 443 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll-~~l~~~~~~~~G~i~~~g-------~~~~~~---~~~~~r-~~i~~v~ 443 (1133)
.++|+|+||+|++||+++|+||||||||||+ ..+. .+|++.+.+ ..+... .....+ ...++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 4589999999999999999999999999996 4432 134332210 001000 001111 1234455
Q ss_pred cCCCC-cc--ccH---HHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccc-cccCCCCCCChHHHHHHHHHHHHhh
Q 041277 444 QEPAL-FA--TSI---KENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT-QVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 444 Q~~~l-~~--~ti---~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
|++.. .+ .++ .+...+-......++..+ . .+.++.+ |+.. .......+||||||||++||||++.
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~---~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRE---R---LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHH---H---HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 54431 11 122 222211000000000110 0 1223333 2222 2456677999999999999999999
Q ss_pred CC--CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEE------eCCeEEeec
Q 041277 517 AP--RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV------QDGQVMETG 579 (1133)
Q Consensus 517 ~~--~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g 579 (1133)
+| +++||||||++||+.+...+.+.++++. +|.|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 5999999999999999999999998864 589999999999998889999999 999999986
No 404
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.2e-28 Score=234.79 Aligned_cols=202 Identities=29% Similarity=0.368 Sum_probs=147.6
Q ss_pred cEEEEEEEEEcC----CCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe----ecCCCC
Q 041277 360 EVEFKCVQFAYP----SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV----SIDKLQ 431 (1133)
Q Consensus 360 ~i~~~~v~~~y~----~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~----~~~~~~ 431 (1133)
.+.++|++++|. +.-.-+|++|+||+++.||++++-||||||||||+++|-+-|.|++|+|.+.-. |+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 367788877763 112346999999999999999999999999999999999999999999998532 333333
Q ss_pred HH---H-HhhhceEEecCCCCccc-c----HHHHHh-cCCCC-CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCC
Q 041277 432 LK---W-LRSQMGLVSQEPALFAT-S----IKENIL-FGKED-ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQM 500 (1133)
Q Consensus 432 ~~---~-~r~~i~~v~Q~~~l~~~-t----i~eni~-~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 500 (1133)
+. . .|+.||||+|--...+. + +.|-+. .|-+. ...++....+.+.++.+-+-+|| +.++
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------Cccc
Confidence 32 2 34569999996433322 2 233322 23221 11122222333333333333333 4689
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEe
Q 041277 501 SGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQ 571 (1133)
Q Consensus 501 SgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~ 571 (1133)
||||+||+.|||.++.|-+||+|||||++||..+++.+.+.|.+.+ +|..+|=|=||-+.-+. |||++-|.
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 9999999999999999999999999999999999999999998764 68999999999766555 99998774
No 405
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=8.6e-28 Score=260.24 Aligned_cols=193 Identities=26% Similarity=0.406 Sum_probs=140.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHH-----hc-c----CCCcc-----------EEEECCeecCCCCHH---
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQ-----RF-Y----APLGG-----------EIILDGVSIDKLQLK--- 433 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~-----~~-~----~~~~G-----------~i~~~g~~~~~~~~~--- 433 (1133)
.|+|+|++|+.|++++|.|+||||||||++.++ +. . .|..+ -|.+|..++..-+..
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 599999999999999999999999999998663 21 1 13222 356666665432111
Q ss_pred -------HHhh----------------hceEEecCCCC-ccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcc
Q 041277 434 -------WLRS----------------QMGLVSQEPAL-FATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQY 489 (1133)
Q Consensus 434 -------~~r~----------------~i~~v~Q~~~l-~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~ 489 (1133)
.+|+ .+.|..++... .+.|+.||+.|.......++..++ ++.+ |+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~---------L~~v--gL 158 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQT---------LCDV--GL 158 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHH---------HHHc--CC
Confidence 1111 13444444433 244777777653221112222223 3333 33
Q ss_pred cc-cccCCCCCCChHHHHHHHHHHHHhhC---CCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcC
Q 041277 490 DT-QVGERGVQMSGGQKQRIAIARAIIKA---PRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNA 564 (1133)
Q Consensus 490 ~t-~~~~~g~~LSgGqkqri~iARal~~~---~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~ 564 (1133)
+. ..++...+||||||||++|||||+++ |+++||||||++||++..+.+.+.++++. +|.|+|+|+|+++.++.|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 33 35677789999999999999999996 79999999999999999999999998875 589999999999999889
Q ss_pred CEEEEE------eCCeEEeecCc
Q 041277 565 DVIAVV------QDGQVMETGSH 581 (1133)
Q Consensus 565 d~i~~l------~~G~i~~~g~~ 581 (1133)
|++++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999974
No 406
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=7.8e-28 Score=252.54 Aligned_cols=164 Identities=26% Similarity=0.316 Sum_probs=131.3
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc---------cEEEECCeecCCCCHHHHhhhceEEecCCCCcc
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG---------GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA 450 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~---------G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~ 450 (1133)
+++++++++| +++|+||||||||||+++|.++..|.. |++.++|+++... ..++++++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 4677788766432 2356899999999887
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCc
Q 041277 451 TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII----KAPRILLLDEA 526 (1133)
Q Consensus 451 ~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~----~~~~illlDE~ 526 (1133)
|+.. ..+++.++++. ++- ......+||||||||++||||++ .+|++++||||
T Consensus 89 --------~~~~--~~~~~~~~l~~----------~~~----~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 --------YSII--SQGDVSEIIEA----------PGK----KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --------eeEE--ehhhHHHHHhC----------CCc----cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 2211 12333333333 111 12344689999999999999996 56799999999
Q ss_pred ccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 527 TSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 527 ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
|++||+.....+.+.|++..++.|+|++||+++.+..||+++.+..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999988778999999999998888999999864
No 407
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=1.7e-23 Score=244.01 Aligned_cols=392 Identities=14% Similarity=0.132 Sum_probs=289.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChh------HHHHHHHhhHHHHHHH
Q 041277 722 YAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSG------AICSRLAKDANVVRSL 795 (1133)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G------~l~~r~s~D~~~i~~~ 795 (1133)
.+.+|.+++.+..+....+.|+......++-.-|-+.+.++-+...-.|+. +..| ..=.|+..|+...-+.
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l---~~~~~~~~~dNpDQRi~eDi~~~t~~ 164 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL---AQAGGIGLIDNPDQRIQEDIRNFTET 164 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH---HhcccccCCCChHHhHHHHHHHHHhh
Confidence 345566666777777778888888888888888888888888887744443 2333 2348999999988887
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 796 VGDRTALLVQTISAVTIAFTMGL---------------FIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAES 860 (1133)
Q Consensus 796 ~~~~~~~~~~~~~~~i~~~~~~~---------------~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1133)
.......++.++++++.-.+++. .+...+.+++++.+++.-++.++.++.+.+..-+..+..+..
T Consensus 165 t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~f 244 (604)
T COG4178 165 TLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADF 244 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHH
Confidence 77777777777777766555554 233344455566666666666677777777777777777777
Q ss_pred HHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 041277 861 SKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKA 940 (1133)
Q Consensus 861 ~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~ 940 (1133)
.....-.-++...|-.|+.|+.+.++.++..+...+...+.......+..+......+...+-+..++-....|.++.|+
T Consensus 245 R~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~ 324 (604)
T COG4178 245 RYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGG 324 (604)
T ss_pred HHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHH
Confidence 77777777888899999999888777666655554444444444333444444444444444444556667889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC--CCCCCCCCC--CCC---CCCcccEEEEeEEEECCC
Q 041277 941 LFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYT--KIEPEDPEG--HQP---ERITGNIELQNVHFAYPA 1013 (1133)
Q Consensus 941 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~--~~~~~~~~~--~~~---~~~~g~I~f~nVsF~Y~~ 1013 (1133)
++............++-+...+..+..-.+...|+.++.+... +.+++.+.. ... ...+..|+|+|++..-|+
T Consensus 325 lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~ 404 (604)
T COG4178 325 LMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPD 404 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCC
Confidence 9988888888888888888899999999999999988864322 111111111 000 001478999999999975
Q ss_pred CCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccccccccc
Q 041277 1014 RPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGT 1093 (1133)
Q Consensus 1014 ~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gT 1093 (1133)
. .+.|+++||.|+|||.+-|.|+||||||||+++|.|+|+..+|+|-.= . -+.+-++||.|++=.||
T Consensus 405 ~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P----~-------~~~~lflpQ~PY~p~Gt 471 (604)
T COG4178 405 G--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP----A-------DSALLFLPQRPYLPQGT 471 (604)
T ss_pred C--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC----C-------CCceEEecCCCCCCCcc
Confidence 4 367999999999999999999999999999999999999988887542 0 14588999999999999
Q ss_pred HHHHhccCCCC-CCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1094 IRENIAYGASD-EIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1094 IreNI~~g~~~-~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
+||=|.|-++. +.+|+|+.+++.+|++.+++++|.+
T Consensus 472 Lre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~ 508 (604)
T COG4178 472 LREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE 508 (604)
T ss_pred HHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc
Confidence 99999996543 3899999999999999999998753
No 408
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.94 E-value=3e-27 Score=299.72 Aligned_cols=215 Identities=23% Similarity=0.392 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC-CHHHHhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL-QLKWLRS 437 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~-~~~~~r~ 437 (1133)
..+..+|+++.|+.... +.+++|+.|++||+.|+.|+|||||||++++|.|..+|++|++.++|.++..- +....++
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 45889999999986532 89999999999999999999999999999999999999999999999999754 4456889
Q ss_pred hceEEecCCCCccc-cHHHHHhcC-----CCCCC-HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFG-----KEDAS-MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~-----~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
++||+||+..++.. |.||.+.+. .+..+ .+.+.+.++..++.++.... ..++|||+|+|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~-----------~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ-----------VRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc-----------hhhCCCcchhhHHH
Confidence 99999999998876 999999763 22222 23356666666666554432 24899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|-|++.+|++++|||||+|+||.+++.+++.+.+..+ ++.+|+.||.++..+. |||+.+|.+|++..-|++++|..
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 9999999999999999999999999999999999876 4599999999999987 99999999999999999999965
No 409
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=1.3e-27 Score=228.76 Aligned_cols=207 Identities=25% Similarity=0.411 Sum_probs=174.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++||+.+- -|-.+|.++..||.+-+|||||||||||+..++|+. |-+|+|.++|.++..++..++.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 5667776432 367799999999999999999999999999999976 67899999999999999999999999
Q ss_pred EEecCC-CCccccHHHHHhcCCCCCC-HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh--
Q 041277 441 LVSQEP-ALFATSIKENILFGKEDAS-MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK-- 516 (1133)
Q Consensus 441 ~v~Q~~-~l~~~ti~eni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~-- 516 (1133)
|..|+. ..|..-|...+.+..|..+ ..++.+.|.+.++ +..++..-.+|||||-||+-+|-.+++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l-----------~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcc-----------cchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998865 5688899999998877422 2334444544443 444555667999999999999988876
Q ss_pred ---CC--CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcc-hhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 517 ---AP--RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 517 ---~~--~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|| ++||+|||.++||...+..+...|.++. .|.+|||..||++ ++++||++..++.|++..+|..+|.+.
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 33 7999999999999999999988888875 6999999999997 688999999999999999999999987
No 410
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=2.7e-26 Score=252.84 Aligned_cols=130 Identities=25% Similarity=0.461 Sum_probs=119.8
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
|+|+|+||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|+|+++ .+|+|+|||+|+..+++.++|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 579999999999632 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+||||+|.+|++|+++|+++.. ..++++++++++.+++++++.++|+||||
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~ 130 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDF 130 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccc
Confidence 99999999999999999996432 35788999999999999999999999875
No 411
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=2.5e-26 Score=245.42 Aligned_cols=192 Identities=17% Similarity=0.156 Sum_probs=139.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEee-CCCEEEEEcCCCCcHHHHHHHHHh-ccCCCccEEEECCeecCCCCHHHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIP-AGKTVALVGGSGSGKSTVIALLQR-FYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~-~g~~~~ivG~sGsGKSTll~~l~~-~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
.|+++|+. +|.++ ++++|+.. +|++++|+||||||||||+++|.+ +|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58889887 76432 56777654 599999999999999999999994 666665655543 1112223334456
Q ss_pred hceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCC-cccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 438 QMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQ-QYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
.|++++|++...-. +..+. ..+.++..+... ++. ++++.+...+.+||||||||++||||++.
T Consensus 77 ~v~~~f~~~~~~~~----~~r~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGKKYR----VERSR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCeEEE----EEEec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 79999998743221 11221 233343333210 111 13444556677999999999999999985
Q ss_pred ----------CCCEEEEeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 517 ----------APRILLLDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 517 ----------~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
+|+++||||||++||+.+.+.+.+.+.++.+ ++|+|+|||+++.+.. ||+++++++|.+
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999988764 8899999999998876 899999999853
No 412
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=3.8e-26 Score=250.20 Aligned_cols=191 Identities=25% Similarity=0.302 Sum_probs=130.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh----------------ccCCCcc------
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR----------------FYAPLGG------ 418 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~----------------~~~~~~G------ 418 (1133)
|+++|. ++|++. .++++++ |++++|+||||||||||+++|.+ +..+.+|
T Consensus 4 i~~~nf-ksy~~~---~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 4 VIIQGF-KSYKDQ---TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEeCc-cCcccC---cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 566653 346532 3777776 88999999999999999999984 3444555
Q ss_pred --EEEECCeecCC-C--CHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHH--HhCCCc---
Q 041277 419 --EIILDGVSIDK-L--QLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFI--RQLPQQ--- 488 (1133)
Q Consensus 419 --~i~~~g~~~~~-~--~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i--~~l~~g--- 488 (1133)
+|.+++.+-.. . ....+++++++++|++.++.. ..+.+++...++..++...- ...++|
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~-----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~ 143 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK-----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKIN 143 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe-----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCchH
Confidence 55555432110 0 112345667888877766542 12233333333333321100 000111
Q ss_pred ----ccccccCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcch
Q 041277 489 ----YDTQVGERGVQMSGGQKQRIAIARAIIK----APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLST 560 (1133)
Q Consensus 489 ----~~t~~~~~g~~LSgGqkqri~iARal~~----~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 560 (1133)
......+++.+||||||||++||||++. +|+++||||||++||+.+.+.+.+.++++.+++|+|+++|+.+.
T Consensus 144 ~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~ 223 (243)
T cd03272 144 SLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPEL 223 (243)
T ss_pred HhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 1222456678999999999999999973 68999999999999999999999999988778888999999877
Q ss_pred hhcCCEEEEEe
Q 041277 561 IRNADVIAVVQ 571 (1133)
Q Consensus 561 ~~~~d~i~~l~ 571 (1133)
.+.||++++|+
T Consensus 224 ~~~~d~i~~l~ 234 (243)
T cd03272 224 LEVADKFYGVK 234 (243)
T ss_pred HhhCCEEEEEE
Confidence 77799999985
No 413
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.93 E-value=1.2e-22 Score=225.36 Aligned_cols=272 Identities=19% Similarity=0.297 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 37 VLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMR 116 (1133)
Q Consensus 37 ~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 116 (1133)
+++++++++.++..++.|++++.++|.+.... .. ...........++++.++...+.....+...+.+.++..++|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGN---SD-NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLR 77 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTT---SC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777889999999754331 10 011111122222233334444555555556788999999999
Q ss_pred HHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 041277 117 ARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLV 196 (1133)
Q Consensus 117 ~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~ 196 (1133)
.++++|++++|.++|++ + ++|++++|+++|++.+++.+.+.+..++..+..++++++++++++|+++++.+++.|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~-~-~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~ 155 (275)
T PF00664_consen 78 KRLFEKLLRLPYSYFDK-N-SSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLF 155 (275)
T ss_dssp HHHHHHHHHSHHHHHHH-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhh-h-cccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhH
Confidence 99999999999999996 6 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 041277 197 IPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVT 275 (1133)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 275 (1133)
++...+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+.....+...+ ...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (275)
T PF00664_consen 156 LISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFIS 235 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888888 77777
Q ss_pred HHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHHHHHHH
Q 041277 276 FGIWSFLCYYGSRM-VMYHGAQGGTVFAVGASIAVGGLAL 314 (1133)
Q Consensus 276 ~~~~~~~~~~g~~~-v~~~~~t~g~~~~~~~~~~~~~~~~ 314 (1133)
.+..++++++|+++ +.+|.+++|++++++.+......|+
T Consensus 236 ~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 236 YLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 77788899999999 9999999999999888887776653
No 414
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=7e-25 Score=250.85 Aligned_cols=213 Identities=23% Similarity=0.365 Sum_probs=171.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 438 (1133)
.++++|++.. ..++|+||++++||+++|.|--|||+|-++++|.|..++.+|+|.+||+++.-.++ +..+..
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4667776532 14799999999999999999999999999999999999999999999999887765 467888
Q ss_pred ceEEecCCC---Cc-cccHHHHHhcCCC-CCCHH-HHHHHHHHhchHHHHHhCCC---cccccccCCCCCCChHHHHHHH
Q 041277 439 MGLVSQEPA---LF-ATSIKENILFGKE-DASME-EVIEAAKASNAHNFIRQLPQ---QYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 439 i~~v~Q~~~---l~-~~ti~eni~~~~~-~~~~~-~~~~~~~~~~~~~~i~~l~~---g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
|+|||.|-. +| ..+|++|+.+..- ..... -+....+.....+++.+|.- +.+. ...+||||-+|++.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~----~v~~LSGGNQQKVv 411 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ----PIGTLSGGNQQKVV 411 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc----hhhcCCchhhhhHH
Confidence 999999853 55 4599999987621 11100 12333333444556665532 2333 34589999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcch
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|||.|..+|++|||||||-++|.-++.+|.+.|+++. +|+++|+||-.+..+. .||||+||++|+|+.+=+.++
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999999875 6999999999999876 599999999999998666555
No 415
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=3.2e-25 Score=243.39 Aligned_cols=182 Identities=18% Similarity=0.263 Sum_probs=134.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCC-ccEEEECCe-ecCCCC-H-HHHhhhceEEecCCC---------Cc-cccHH
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPL-GGEIILDGV-SIDKLQ-L-KWLRSQMGLVSQEPA---------LF-ATSIK 454 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~-~G~i~~~g~-~~~~~~-~-~~~r~~i~~v~Q~~~---------l~-~~ti~ 454 (1133)
..+++||||||||||||+++|++++.+. .|+++..|. ++-... . ...+.++++++|++. +. ..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5599999999999999999999999886 568888776 432111 1 122348999999962 22 34788
Q ss_pred HHHhcCCC--------CCCHHHHHHHHHHhchHH----H------HHhCCCcccccccCCCCCCChHHHHHHHHHHHHh-
Q 041277 455 ENILFGKE--------DASMEEVIEAAKASNAHN----F------IRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII- 515 (1133)
Q Consensus 455 eni~~~~~--------~~~~~~~~~~~~~~~~~~----~------i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~- 515 (1133)
+|+..+.. ....+++.++++.+++.- + +.++-+ ..........+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~-~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN-MGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH-hHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 88765431 123456666666666530 0 000000 002234456789999999999999998
Q ss_pred ---hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEe
Q 041277 516 ---KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQ 571 (1133)
Q Consensus 516 ---~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 571 (1133)
.+|+++||||||++||+.+.+.+.+.++++.+|.|+|+|||+.+.+..||+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 57899999999999999999999999998877899999999988888899998774
No 416
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.1e-24 Score=238.63 Aligned_cols=188 Identities=23% Similarity=0.361 Sum_probs=135.2
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCee--cCCCCHHHH
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS--IDKLQLKWL 435 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~--~~~~~~~~~ 435 (1133)
..+|..+|.+.+|+++ ..|++-++++..|..+|+||+||+|||||+++|.. |.|..-..+ +......
T Consensus 78 ~~Di~~~~fdLa~G~k---~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~-- 146 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK---ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTE-- 146 (582)
T ss_pred ccceeeeeeeeeecch---hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchH--
Confidence 4578999999999854 48999999999999999999999999999999997 444322211 1100000
Q ss_pred hhhceEEecCCCCccccHHHHHhcCCC---CC-CHHHHHH-HHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 436 RSQMGLVSQEPALFATSIKENILFGKE---DA-SMEEVIE-AAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~ti~eni~~~~~---~~-~~~~~~~-~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
..| ..+-.++-+.-+..-.+ .. +.+++.. +++-.+..+.....|- ..||||-|-|++|
T Consensus 147 ------~~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaL 209 (582)
T KOG0062|consen 147 ------ALQ-SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLAL 209 (582)
T ss_pred ------HHh-hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHH
Confidence 001 11223333333322111 01 3344444 5555666666666553 5899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
||||..+||||||||||+.||..+-.-+.+.|..+. .|+|+|+|+-.++.. |..|+.+++-|+
T Consensus 210 ARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 210 ARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKL 273 (582)
T ss_pred HHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999988888887753 899999999999987 888888876443
No 417
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=6.3e-25 Score=232.10 Aligned_cols=163 Identities=26% Similarity=0.278 Sum_probs=127.7
Q ss_pred eeEEeeCCCEEEEEcCCCCcHHHHHHHHH----hccCCCccEEEECCeecCCCCHHHHhhhceEEecCC-----CCccc-
Q 041277 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQ----RFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEP-----ALFAT- 451 (1133)
Q Consensus 382 i~l~i~~g~~~~ivG~sGsGKSTll~~l~----~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-----~l~~~- 451 (1133)
.++++.+| +++|+||||||||||+++|. |...|..|.+.-+...+.. ...+..+++++|++ .+...
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999994 8888888877622222222 23356799999998 33332
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH------HHHHHHHhhCCCEEEEeC
Q 041277 452 SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR------IAIARAIIKAPRILLLDE 525 (1133)
Q Consensus 452 ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr------i~iARal~~~~~illlDE 525 (1133)
|+.||+.++. .+++.+ .+ .+...+||+||||| ++||||++.+|++++|||
T Consensus 92 ~~~~~~~~~~----~~~~~~---------~~-----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 92 AILENVIFCH----QGESNW---------PL-----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hHhhceeeec----hHHHHH---------HH-----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 9999998752 222221 12 23346899999996 799999999999999999
Q ss_pred cccCCChHHHH-HHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeC
Q 041277 526 ATSALDSESER-VVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 526 ~ts~lD~~~~~-~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
||++||+.+.. .+.+.++++.+ ++|+|++||+++.+..||++++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999999 99999988764 7899999999998888999999964
No 418
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=3.6e-25 Score=247.34 Aligned_cols=194 Identities=27% Similarity=0.394 Sum_probs=163.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..|.++||+|.|++++ .+++++||-|..++.+|+|||||+|||||++++.|...|+.|.|.-.-+. .
T Consensus 388 pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------K 454 (614)
T ss_pred CeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------c
Confidence 4589999999998654 58999999999999999999999999999999999999999999765433 3
Q ss_pred ceEEecCC---CCccccHHHHHhcCCC-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 439 MGLVSQEP---ALFATSIKENILFGKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 439 i~~v~Q~~---~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
+++-.|+. ..++.+.-|+++=-.+ ....+++...+...|+....+..|- .+||+|||.||++||.+
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLA 524 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHH
Confidence 44444543 3456688888864334 3566778888888888766555552 58999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEe
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
++.|.||+|||||++||.++-....++|.+. .-++|+|+|+...+.+ |++|.+.+||.+..
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 9999999999999999999999999999876 4589999999999987 99999999998864
No 419
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.91 E-value=1.3e-21 Score=217.05 Aligned_cols=273 Identities=21% Similarity=0.387 Sum_probs=232.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 680 TLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERM 759 (1133)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l 759 (1133)
++++++.++.++..+..|++++.+++.....+.. .......+...++++.++...+.....+...+.+.++..++|.++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD-NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRL 80 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777888888999988874332211 111111222223333444455555556667889999999999999
Q ss_pred HHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041277 760 LSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICF 839 (1133)
Q Consensus 760 ~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~~~~~ 839 (1133)
++|+++.|.+||+ ++++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|++++++++..|+..+..
T Consensus 81 ~~~~~~~~~~~~~--~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 158 (275)
T PF00664_consen 81 FEKLLRLPYSYFD--KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLIS 158 (275)
T ss_dssp HHHHHHSHHHHHH--HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--hhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhh
Confidence 9999999999998 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 840 YARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCT 919 (1133)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (1133)
....++.++..++..+..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+..........+...+..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (275)
T PF00664_consen 159 FIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLS 238 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHH
Q 041277 920 WALDFWYGGRL-IADGYISSKALFETFMILVSTGRVI 955 (1133)
Q Consensus 920 ~~~~~~~g~~l-~~~g~~t~g~l~~~~~~~~~~~~~~ 955 (1133)
.++++++|+++ +..|.+++|++++++.+......|+
T Consensus 239 ~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 239 IVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 99999999999 9999999999999998888776664
No 420
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=9.5e-25 Score=267.58 Aligned_cols=200 Identities=27% Similarity=0.407 Sum_probs=166.6
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC--CCccEEEECCeecCCCCHHHHhhhceEEecCCC-Cccc
Q 041277 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA--PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPA-LFAT 451 (1133)
Q Consensus 375 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-l~~~ 451 (1133)
.+.+|+||+=-++||..+||+|+|||||||||+.|+|=.. ..+|+|+|||.+..+ +..++.+|||.|+.. +-.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 3568999999999999999999999999999999998532 257999999998764 567889999999764 4455
Q ss_pred cHHHHHhcCC----C-CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC-CEE
Q 041277 452 SIKENILFGK----E-DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP-RIL 521 (1133)
Q Consensus 452 ti~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~-~il 521 (1133)
||||-+.|.. | +.+. +-++++.+..++.++- |..||.-|..||..||+|+.||=-|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998852 2 2222 3355666666555443 45688888999999999999999999999 899
Q ss_pred EEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcch--hhcCCEEEEEe-CCeEEeecCcchh
Q 041277 522 LLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST--IRNADVIAVVQ-DGQVMETGSHDEL 584 (1133)
Q Consensus 522 llDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~-~G~i~~~g~~~~l 584 (1133)
+|||||||||+++...|++.++++. .|+||++.-|+++. .+..|+++.|+ .|+.+..|+..+-
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 9999999999999999999999975 69999999999985 46799999996 5799999987653
No 421
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=9e-25 Score=231.95 Aligned_cols=184 Identities=19% Similarity=0.230 Sum_probs=133.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHh-hh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR-SQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 438 (1133)
.|+++|.. +|++. .+++++++ ++++|+|||||||||++++|.. ++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~~~---~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~----------~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAGE---QVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF----------VFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCCCC---eeeccCCC-----CeEEEECCCCCCHHHHHHHHHH----------HhccCHH-----Hhhhhh
Confidence 46777765 67543 48898887 8999999999999999999972 3443331 223 57
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCCHHHH-----HHHH-H----HhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDASMEEV-----IEAA-K----ASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~-----~~~~-~----~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
+++++|+..+++. |+++++.+-......+.. .... . ...+ ..+..+|++.++.+ ..||+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~-~~~~~L~~~~~~~~----~~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEV-EQIAQMPKKSWKNI----SNLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcE-EEeeccccccccch----hhcCHHHHHH
Confidence 9999999877654 677766543211111000 0000 0 0011 12334566665544 4799999999
Q ss_pred HHHHHHHhh----CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 508 IAIARAIIK----APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 508 i~iARal~~----~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
++||||++. +|++++|||||++||+.+...+.+.++++.++.|+|++||+.+..+.||++++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 999999974 57999999999999999999999999998778899999999877777999999964
No 422
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.90 E-value=2.5e-23 Score=269.36 Aligned_cols=211 Identities=23% Similarity=0.359 Sum_probs=151.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHH---------HHHhccCCCc----c----EEEE
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIA---------LLQRFYAPLG----G----EIIL 422 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~---------~l~~~~~~~~----G----~i~~ 422 (1133)
.++++|++. ..|+|+||+|++||+++|.|+||||||||++ .|.|...+.. + -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 477777752 2699999999999999999999999999999 4555332211 1 1345
Q ss_pred CCeecCCCC----H------HHHh---------hh-----ceEEecC------------------C--------------
Q 041277 423 DGVSIDKLQ----L------KWLR---------SQ-----MGLVSQE------------------P-------------- 446 (1133)
Q Consensus 423 ~g~~~~~~~----~------~~~r---------~~-----i~~v~Q~------------------~-------------- 446 (1133)
|-.++..-+ . +++| ++ ..+.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 544443211 1 1233 11 1233342 1
Q ss_pred ------CCccc-cHHHHHhcCCCCC-----CHHHHHHHHHHhchHHHHHhCCCccccc-ccCCCCCCChHHHHHHHHHHH
Q 041277 447 ------ALFAT-SIKENILFGKEDA-----SMEEVIEAAKASNAHNFIRQLPQQYDTQ-VGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 447 ------~l~~~-ti~eni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGqkqri~iARa 513 (1133)
..+.+ ||.||+.++..++ ..+++.+.+ +.++.+ |++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 12333 8888888764311 122222222 123333 45544 577788999999999999999
Q ss_pred Hh---hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEe------CCeEEeecCcch
Q 041277 514 II---KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQ------DGQVMETGSHDE 583 (1133)
Q Consensus 514 l~---~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~------~G~i~~~g~~~~ 583 (1133)
|+ ++|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|+|+++.++.||+|++|+ +|+++++|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 5999999999999999999999999998875 5899999999999997799999996 799999999999
Q ss_pred hcc
Q 041277 584 LIQ 586 (1133)
Q Consensus 584 l~~ 586 (1133)
+..
T Consensus 904 l~~ 906 (1809)
T PRK00635 904 LIH 906 (1809)
T ss_pred HHh
Confidence 875
No 423
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.90 E-value=5e-23 Score=257.15 Aligned_cols=97 Identities=33% Similarity=0.588 Sum_probs=90.0
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEE
Q 041277 492 QVGERGVQMSGGQKQRIAIARAIIKAP---RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVI 567 (1133)
Q Consensus 492 ~~~~~g~~LSgGqkqri~iARal~~~~---~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i 567 (1133)
.+++...+||||||||++|||+|+++| +++||||||++||+...+.+.+.|+++. +|+|+|+|+|+++.+..||+|
T Consensus 823 ~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~i 902 (943)
T PRK00349 823 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWI 902 (943)
T ss_pred cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEE
Confidence 367788899999999999999999999 9999999999999999999999998875 589999999999999889999
Q ss_pred EEE------eCCeEEeecCcchhcccc
Q 041277 568 AVV------QDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 568 ~~l------~~G~i~~~g~~~~l~~~~ 588 (1133)
++| ++|+|++.|+++++.+.+
T Consensus 903 i~Lgp~~G~~~G~Iv~~Gt~~el~~~~ 929 (943)
T PRK00349 903 IDLGPEGGDGGGEIVATGTPEEVAKVE 929 (943)
T ss_pred EEecCCcCCCCCEEEEeCCHHHHHhCc
Confidence 999 799999999999998643
No 424
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.90 E-value=5.4e-24 Score=208.14 Aligned_cols=128 Identities=27% Similarity=0.350 Sum_probs=112.6
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh---hHHhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL---RSLRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l---~~LR~ 1078 (1133)
|+|+||+.+|+.. +++|+||||+|++||.+=++|||||||||+++||+|-..|++|+|.++|.|+..+.- ..||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999864 569999999999999999999999999999999999999999999999999987764 45899
Q ss_pred cccccccccccc-cccHHHHhccCC-----CCCCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1079 HIALVSQEPTLF-AGTIRENIAYGA-----SDEIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1079 ~isiV~Qdp~LF-~gTIreNI~~g~-----~~~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+||+|+||--|. +-|+.||++|.- +...-.+++.++++.+++.+-...||..+
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~L 138 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQL 138 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcccc
Confidence 999999999866 569999998842 22222457889999999999999999755
No 425
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.2e-23 Score=209.50 Aligned_cols=123 Identities=29% Similarity=0.482 Sum_probs=109.6
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCC-----CeEEECCcccCC--CC
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK-----GDVKIDDRDIRS--YH 1072 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~-----G~I~IdG~dI~~--i~ 1072 (1133)
..++.+|+++.|.+ ..+|+|||++|++++.+|++|||||||||+++.|-|+.|..+ |+|.+||.||.+ ++
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 36899999999963 348999999999999999999999999999999999999876 999999999976 57
Q ss_pred hhHHhhcccccccccccccccHHHHhccCCC-CC----CCHHHHHHHHHHcchHHHHh
Q 041277 1073 LRSLRRHIALVSQEPTLFAGTIRENIAYGAS-DE----IDESEIVEAAKAANAHDFIA 1125 (1133)
Q Consensus 1073 l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~-~~----~sdeei~~Al~~a~l~dfI~ 1125 (1133)
...||+++|+|+|.|.-|..||+||++||.. +. .=||-+++++++|.+||-+.
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK 140 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK 140 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH
Confidence 9999999999999999999999999999942 11 12456888999999999875
No 426
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.89 E-value=1.8e-22 Score=225.54 Aligned_cols=215 Identities=23% Similarity=0.435 Sum_probs=175.3
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeec-CCCCHHHHhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI-DKLQLKWLRS 437 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~-~~~~~~~~r~ 437 (1133)
.-++++|++..-.. ....+++|||++++||+++|.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+|+ ...+...+|+
T Consensus 256 ~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 256 VVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred eEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 35899999986432 24579999999999999999999999999999999999999999999999997 6677776664
Q ss_pred -hceEEecCCC----CccccHHHHHhcCCCC---------CCHHHHHHHHHHhchHHHHHhC---CCcccccccCCCCCC
Q 041277 438 -QMGLVSQEPA----LFATSIKENILFGKED---------ASMEEVIEAAKASNAHNFIRQL---PQQYDTQVGERGVQM 500 (1133)
Q Consensus 438 -~i~~v~Q~~~----l~~~ti~eni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l---~~g~~t~~~~~g~~L 500 (1133)
.+||||.|.. ....|+.||+.++... .+..++.+.++ +.++++ +.+.++. ..+|
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~~~~----a~~L 404 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSPDAP----ARSL 404 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCCCcc----hhhc
Confidence 6999999973 3466999999886432 12233333322 233333 2233333 3589
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEee
Q 041277 501 SGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMET 578 (1133)
Q Consensus 501 SgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 578 (1133)
|||++||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.+ +|+.|++|+-+++.+.. ||||.||.+|+++..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 9999999999999999999999999999999999999999888765 69999999999999865 999999999999988
Q ss_pred cCcchh
Q 041277 579 GSHDEL 584 (1133)
Q Consensus 579 g~~~~l 584 (1133)
.++++.
T Consensus 485 ~~~~~~ 490 (501)
T COG3845 485 VPPEEA 490 (501)
T ss_pred cccccC
Confidence 877763
No 427
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=4.4e-23 Score=203.17 Aligned_cols=224 Identities=23% Similarity=0.352 Sum_probs=176.8
Q ss_pred EEEEEEEcCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC----CCccEEEECCeecCCCCHHHHhh
Q 041277 363 FKCVQFAYPSR-PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA----PLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 363 ~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~----~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
++|++..+... ....+.+++|++...||+-++||.||||||-+.+.|+|..+ .+.-..++++.|+-++++++.|+
T Consensus 6 IrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk 85 (330)
T COG4170 6 IRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred ccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhh
Confidence 44444444321 12357899999999999999999999999999999999764 35667788999999998888775
Q ss_pred ----hceEEecCCCCc---cccH----HHHHhcC----CC----CCCHHHHHHHHHHhchHH---HHHhCCCcccccccC
Q 041277 438 ----QMGLVSQEPALF---ATSI----KENILFG----KE----DASMEEVIEAAKASNAHN---FIRQLPQQYDTQVGE 495 (1133)
Q Consensus 438 ----~i~~v~Q~~~l~---~~ti----~eni~~~----~~----~~~~~~~~~~~~~~~~~~---~i~~l~~g~~t~~~~ 495 (1133)
.|++++|+|.-. +.+| -+||-+- +. .-...+.++.+.++|+.| ...+.|
T Consensus 86 ~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP--------- 156 (330)
T COG4170 86 LVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP--------- 156 (330)
T ss_pred hhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc---------
Confidence 478999999643 2243 4555321 10 112345666777777654 233334
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeC
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD 572 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~ 572 (1133)
.+|-.|+-|+|.||-|+..+|++||.||||.++|+.++.+|...|..+. .|.|+++++|++..+.. ||+|-||--
T Consensus 157 --~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYC 234 (330)
T COG4170 157 --YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYC 234 (330)
T ss_pred --chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEe
Confidence 4788999999999999999999999999999999999999999998764 47899999999999987 999999999
Q ss_pred CeEEeecCcchhccccchhhHHHHH
Q 041277 573 GQVMETGSHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 573 G~i~~~g~~~~l~~~~~~~~~~~~~ 597 (1133)
|+-+|.+..+++++.+...|.+-.-
T Consensus 235 GQ~~ESa~~e~l~~~PhHPYTqALi 259 (330)
T COG4170 235 GQTVESAPSEELVTMPHHPYTQALI 259 (330)
T ss_pred cccccccchhHHhcCCCCchHHHHH
Confidence 9999999999999877888876543
No 428
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.89 E-value=1.3e-23 Score=214.44 Aligned_cols=127 Identities=31% Similarity=0.435 Sum_probs=112.1
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+|+|||++|. +..+++|+||+|++||.+.+||||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 89999999996 345899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc-cccHHHHhccCCC-----CCCCHHHHHHHHHHcchH--HHHhhccccc
Q 041277 1082 LVSQEPTLF-AGTIRENIAYGAS-----DEIDESEIVEAAKAANAH--DFIAGLNEGY 1131 (1133)
Q Consensus 1082 iV~Qdp~LF-~gTIreNI~~g~~-----~~~sdeei~~Al~~a~l~--dfI~~LP~G~ 1131 (1133)
||-|..-|| +-||.|||++-+. .+.-++.+.+-++.++++ +|-.+.|..+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eL 136 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhc
Confidence 999999999 4799999987521 112245677888999996 5888888644
No 429
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=8e-23 Score=220.52 Aligned_cols=131 Identities=33% Similarity=0.573 Sum_probs=119.9
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+||+|||||||+++|.|++.|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 579999999999742 2368999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++|+||+|.+|++|++|||.+.. ..+.+++.++++..++.+++.++|.|++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 131 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDT 131 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence 99999999999999999998653 34677899999999999999999988875
No 430
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=8.2e-23 Score=231.20 Aligned_cols=125 Identities=29% Similarity=0.476 Sum_probs=106.0
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcC-----CCCCeEEECCcccC--C
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-----PLKGDVKIDDRDIR--S 1070 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd-----p~~G~I~IdG~dI~--~ 1070 (1133)
..+.|+|+||+|+|++. ..++|+|+||+|++||++|||||||||||||+++|+|+++ |++|+|.|||+|++ +
T Consensus 77 ~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 45789999999999642 3469999999999999999999999999999999999997 57999999999997 4
Q ss_pred CChhHHhhcccccccccccccccHHHHhccCCC-CCCCHHH-----HHHHHHHcchHHH
Q 041277 1071 YHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS-DEIDESE-----IVEAAKAANAHDF 1123 (1133)
Q Consensus 1071 i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~-~~~sdee-----i~~Al~~a~l~df 1123 (1133)
+++..+|+.++||||+|.+|++||+|||.++.. +..++++ +.++++.+++++.
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 214 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDE 214 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcch
Confidence 567789999999999999999999999998742 2244444 4567788887543
No 431
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=5.2e-23 Score=224.98 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=127.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCee-c-CC-----CCHHHHhhhceEEecCCC--CccccHHHHHh--
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS-I-DK-----LQLKWLRSQMGLVSQEPA--LFATSIKENIL-- 458 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~-~-~~-----~~~~~~r~~i~~v~Q~~~--l~~~ti~eni~-- 458 (1133)
.+++|+||||||||||+.+|.+...+..|+++.++.+ + .. .+.....-.+.+..|++. ++..+++++-.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888887655421 1 11 111122223445555432 23344433321
Q ss_pred -cCCCCCCHHHHHHHHHHhchHHHHHh--CCCcccccccC---------CCCCCChHHHHHHHHHHHHhhC----CCEEE
Q 041277 459 -FGKEDASMEEVIEAAKASNAHNFIRQ--LPQQYDTQVGE---------RGVQMSGGQKQRIAIARAIIKA----PRILL 522 (1133)
Q Consensus 459 -~~~~~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~---------~g~~LSgGqkqri~iARal~~~----~~ill 522 (1133)
+.....+.+++.+.++.++++.+... .++|.-+.+.+ ...+||||||||++||||++.+ |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 12223556777777788777422111 12232222222 2368999999999999999864 89999
Q ss_pred EeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhcCCEEEEEeC
Q 041277 523 LDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 523 lDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
|||||++||+.....+.+.|++..+ |.|+|+|||+.+.+..||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998764 8899999999888888999999864
No 432
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=1e-22 Score=204.32 Aligned_cols=128 Identities=25% Similarity=0.454 Sum_probs=109.9
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC-CCChhHHhhc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR-SYHLRSLRRH 1079 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~-~i~l~~LR~~ 1079 (1133)
-|+++||+.+|. +..||+|||++|++||.|+|+|||||||||++++|.++-+|++|+|.|||.++. ..++..+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 489999999996 335999999999999999999999999999999999999999999999998763 3389999999
Q ss_pred cccccccccccc-ccHHHHhccCCC--CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1080 IALVSQEPTLFA-GTIRENIAYGAS--DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1080 isiV~Qdp~LF~-gTIreNI~~g~~--~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+|+|+|...||. -|+-||+.+++- ...+ ++.-.+.++++++.|-..+.|..+
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qL 137 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQL 137 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcccc
Confidence 999999999995 699999999731 1122 234456688999999999888755
No 433
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.87 E-value=2.6e-22 Score=221.20 Aligned_cols=133 Identities=26% Similarity=0.481 Sum_probs=120.3
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHh
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
..|.|+++||+++|+.. +.++|+|+||+|+|||.+||+|++|||||||+++|+|+++|++|+|++||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46889999999999642 24589999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1078 RHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+++++|||+|.+|++|++||+.+.. ...+++++++++.+++++++..+|.|++|
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~ 148 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDA 148 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCc
Confidence 9999999999999999999997542 23566788999999999999999988875
No 434
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=1.2e-21 Score=244.42 Aligned_cols=97 Identities=30% Similarity=0.554 Sum_probs=88.0
Q ss_pred cccc-cccCCCCCCChHHHHHHHHHHHHhh---CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh
Q 041277 488 QYDT-QVGERGVQMSGGQKQRIAIARAIIK---APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR 562 (1133)
Q Consensus 488 g~~t-~~~~~g~~LSgGqkqri~iARal~~---~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~ 562 (1133)
|++. .+++...+||||||||++|||+|++ +|+++||||||++||+...+.+.+.|+++. +|+|+|+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4443 3677888999999999999999997 599999999999999999999999998875 5899999999999998
Q ss_pred cCCEEEEE------eCCeEEeecCcchh
Q 041277 563 NADVIAVV------QDGQVMETGSHDEL 584 (1133)
Q Consensus 563 ~~d~i~~l------~~G~i~~~g~~~~l 584 (1133)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999998876
No 435
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.87 E-value=3.6e-22 Score=216.14 Aligned_cols=135 Identities=46% Similarity=0.811 Sum_probs=118.4
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHh
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
..|.|+++|++++|+++.+.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999753234689999999999999999999999999999999999999999999999999888888889
Q ss_pred hcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1078 RHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+++++|||+|.+|.+|++||+.++.. ..+.+++++.++...++++++.+|.|+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~ 142 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDT 142 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccc
Confidence 99999999999999999999988743 23455677777778889999999877753
No 436
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.2e-22 Score=217.06 Aligned_cols=131 Identities=47% Similarity=0.791 Sum_probs=118.8
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
|+|+++|++++|++ ..++|+|+||+|++||.+||+||+|||||||+++|.|++.|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 47999999999963 2358999999999999999999999999999999999999999999999999998888899999
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++|+||+|.+|++|++||+.++.+ ...++++.++++..++.++++++|.|+++
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 131 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDT 131 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccC
Confidence 999999999999999999998754 34567888899999999999999987763
No 437
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.87 E-value=3.7e-22 Score=217.76 Aligned_cols=129 Identities=43% Similarity=0.706 Sum_probs=116.4
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|+.+ +.++|+|+||++++||.+||+|++|||||||+++|.|++.|++|+|++||.|+...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5799999999642 346899999999999999999999999999999999999999999999999999888888999999
Q ss_pred ccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccC
Q 041277 1082 LVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132 (1133)
Q Consensus 1082 iV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~d 1132 (1133)
+|||++.+|+.|++|||.++.+ ..+.+++.++++..+++++++.+|.|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 129 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYD 129 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCccccc
Confidence 9999999999999999988654 3456678888999999999999988765
No 438
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=9.2e-22 Score=219.07 Aligned_cols=212 Identities=23% Similarity=0.299 Sum_probs=172.0
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
++.+++.+|+|.|+..+ .+.+.+++++++.-+.+++||++|+||||+++++.+...|..|.+.+.+ |.
T Consensus 360 ~p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 35699999999997543 2689999999999999999999999999999999999999999998876 56
Q ss_pred hceEEecCCCCc-cc--cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 438 QMGLVSQEPALF-AT--SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 438 ~i~~v~Q~~~l~-~~--ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
+|+|-.|...=+ +. +..|-..-..|..+++++.+.|...|+...+...+ ...||||||-|+++|-..
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACT 497 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHh
Confidence 899999975433 22 22333332344558899999999888876655432 246999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhhH
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 593 (1133)
..+|.+|+|||||+.||.++-..+-++|+... -.||+|||+.+++.. |+.+.+.++|++.. .+..-..|+
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~-------ieg~~~~yK 568 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTP-------IEGGIDKYK 568 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEe-------eeccHHHHH
Confidence 99999999999999999999999999998763 469999999999987 99999999999975 111223466
Q ss_pred HHHHhhc
Q 041277 594 SLVRLQT 600 (1133)
Q Consensus 594 ~~~~~~~ 600 (1133)
++...+.
T Consensus 569 kl~~~e~ 575 (582)
T KOG0062|consen 569 KLLGAEL 575 (582)
T ss_pred HHHHHHH
Confidence 6665543
No 439
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.87 E-value=3.4e-22 Score=220.34 Aligned_cols=126 Identities=29% Similarity=0.457 Sum_probs=113.8
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+.+|++. . +|+|+||+|+.||.++|||||||||||+++++.||.+|++|+|+|||.|+.++++++ ++|
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2 899999999999999999999999999999999999999999999999999999986 899
Q ss_pred cccccccccccc-cHHHHhccCCCC-----CCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGASD-----EIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~~-----~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|+|+..||.- |++|||+|+... +--++++.++++..++.+..++.|..+
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~L 134 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQL 134 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccC
Confidence 999999999975 999999998431 223678999999999999999998765
No 440
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=6.8e-22 Score=213.43 Aligned_cols=191 Identities=28% Similarity=0.391 Sum_probs=149.7
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+-+-+.||+|.|++. .+.+++++|-|.--..+|||||||.|||||+++|.|-++|++|+.+=+- |-+
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~ 651 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLR 651 (807)
T ss_pred CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eee
Confidence 346789999999864 4689999999999999999999999999999999999999999876432 346
Q ss_pred ceEEecCCC--Cc-cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 439 MGLVSQEPA--LF-ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 439 i~~v~Q~~~--l~-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
||+.-|+.. |- ..|-.|.+.-+. +..+++..+++-..++..- -+|. ....||||||.||++|---+
T Consensus 652 iG~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLal 720 (807)
T KOG0066|consen 652 IGWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELAL 720 (807)
T ss_pred eechhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHhc
Confidence 999888753 22 337777776332 3556666666665554322 1221 23579999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCC-EEEEEeCCeE
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNAD-VIAVVQDGQV 575 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d-~i~~l~~G~i 575 (1133)
+.|+||||||||.+||.++-..+-++|.+. +-.||+|||+-..+...| ..+|+++-.|
T Consensus 721 ~~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 721 GGPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CCCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCCh
Confidence 999999999999999999999999999886 457999999998887633 4556665444
No 441
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.86 E-value=8.1e-22 Score=215.21 Aligned_cols=131 Identities=58% Similarity=0.966 Sum_probs=116.7
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++|++++|++..+.++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999997433346899999999999999999999999999999999999999999999999998888888889999
Q ss_pred ccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1082 LVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1082 iV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++||+|.+|+.|++||+.++.+ ..+.+++.++++..++.+++..+|.|+++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDT 131 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhccccce
Confidence 9999999999999999998754 24566788888888999999999887753
No 442
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.3e-22 Score=209.35 Aligned_cols=130 Identities=28% Similarity=0.440 Sum_probs=110.2
Q ss_pred EEEEeEEEECCCC--CCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC---hhHH
Q 041277 1002 IELQNVHFAYPAR--PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH---LRSL 1076 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~---l~~L 1076 (1133)
|+|+||+..|+.. +...+|+||||+|++||..||||+||||||||++++-|+-.|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999853 1246899999999999999999999999999999999999999999999998887766 6667
Q ss_pred hhccccccccccccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1077 RRHIALVSQEPTLFA-GTIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF~-gTIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|++||+|+|++.|++ .|+.+|++|.-. ...+ .+.+.+.++.+++.|.-.+-|..+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qL 142 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQL 142 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhc
Confidence 899999999999998 899999988321 1122 345677899999999888777543
No 443
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.86 E-value=1.7e-21 Score=210.06 Aligned_cols=132 Identities=41% Similarity=0.719 Sum_probs=118.0
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
|+|+++|++++|+++ +.++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++...+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999642 2458999999999999999999999999999999999999999999999999988888888999
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+++|||+|.+|..|++||+.++.+ ..+++++.++++..++.+.+.++|.|++|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 132 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDL 132 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccc
Confidence 999999999999999999988643 23566788899999999999999887764
No 444
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.2e-21 Score=213.63 Aligned_cols=129 Identities=50% Similarity=0.753 Sum_probs=117.6
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|++ +.++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 579999999963 235899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1082 LVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1082 iV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++||+|.+|++|++||+.++.+ ..+++++.++++.+++.+.+..+|.|++|
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 129 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDT 129 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccc
Confidence 9999999999999999998754 35677888899999999999999988764
No 445
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.86 E-value=5.2e-19 Score=199.78 Aligned_cols=391 Identities=14% Similarity=0.214 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccC-CCChhHHHHHHHhhHHHHHHHHhhHH
Q 041277 722 YAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQD-ENSSGAICSRLAKDANVVRSLVGDRT 800 (1133)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~-~~~~G~l~~r~s~D~~~i~~~~~~~~ 800 (1133)
+++.+.++..+..+..+...-+..+.-.++++.+|...|+.--.-.++--|.+ .||- .|+++|++..-..+....
T Consensus 128 ~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPD----QrltqDv~kf~~~l~sl~ 203 (659)
T KOG0060|consen 128 YVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPD----QRLTQDVEKFCRQLSSLY 203 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChH----HHHhHHHHHHHHHHHHHH
Confidence 44444445555555555444444455555566666655554433333333321 2332 688888887766555544
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhc
Q 041277 801 ALLVQTISAVTIAFTMGL-FIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSS 879 (1133)
Q Consensus 801 ~~~~~~~~~~i~~~~~~~-~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~ 879 (1133)
..++...+.++.-..-++ ...|.-+..++..+.+..++....++.+.+..-+.++..++..-.-.+...+.+.|.-|+.
T Consensus 204 s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g 283 (659)
T KOG0060|consen 204 SNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRG 283 (659)
T ss_pred HhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhcc
Confidence 444444333222211111 1223222222222221222222222222233334444444444444566667778888887
Q ss_pred hHHHHHH----HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCHHHHHHHHH----H
Q 041277 880 QHRILKM----LEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLI----ADGYISSKALFETFM----I 947 (1133)
Q Consensus 880 e~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~----~~g~~t~g~l~~~~~----~ 947 (1133)
++.+..+ |++..+...+.-....|.. +. ...+-++..++-+.+-+.-+ ..+.++...+...+. +
T Consensus 284 ~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~-f~---~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~ 359 (659)
T KOG0060|consen 284 GQVEHQRTDQRFRNLVQHLRELMSFRFWLG-FI---DNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFV 359 (659)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHH
Confidence 7665544 4444443333222222221 11 11111222111111111111 224566665544332 2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCC-------------CCCC------CCC-CCCCCCcccEEEEeE
Q 041277 948 LVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKI-------------EPED------PEG-HQPERITGNIELQNV 1007 (1133)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~-------------~~~~------~~~-~~~~~~~g~I~f~nV 1007 (1133)
.......++.+.....++.+...-..||-++++.-.+. ..|. +++ ....+.+-.|+|++|
T Consensus 360 ~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v 439 (659)
T KOG0060|consen 360 FIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEV 439 (659)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeee
Confidence 22233444555555566666666677777765421110 0000 000 011122357999999
Q ss_pred EEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE--CCcccCCCChhHHhhccccccc
Q 041277 1008 HFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI--DDRDIRSYHLRSLRRHIALVSQ 1085 (1133)
Q Consensus 1008 sF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I--dG~dI~~i~l~~LR~~isiV~Q 1085 (1133)
++.=|++ +..+.+|+||+|+.|+.+-|+||||||||+|++.|.++|+..+|++.- ||-+ +.+=+|||
T Consensus 440 ~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~----------~~lfflPQ 508 (659)
T KOG0060|consen 440 SLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP----------KDLFFLPQ 508 (659)
T ss_pred eecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----------CceEEecC
Confidence 9999875 445678899999999999999999999999999999999999999864 3332 45889999
Q ss_pred ccccccccHHHHhccCC----C--CCCCHHHHHHHHHHcchHHHHhhcccccC
Q 041277 1086 EPTLFAGTIRENIAYGA----S--DEIDESEIVEAAKAANAHDFIAGLNEGYD 1132 (1133)
Q Consensus 1086 dp~LF~gTIreNI~~g~----~--~~~sdeei~~Al~~a~l~dfI~~LP~G~d 1132 (1133)
-|++=.||+||-+-|-. + ...+|++|.+-++.+++.+.++. -+|+|
T Consensus 509 rPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld 560 (659)
T KOG0060|consen 509 RPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLD 560 (659)
T ss_pred CCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCC
Confidence 99999999999998831 1 24689999999999999887665 47777
No 446
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.5e-21 Score=212.57 Aligned_cols=130 Identities=53% Similarity=0.834 Sum_probs=116.7
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++|++++|+++ +.++|+|+||++++||.+||+||+|||||||+++|.|++.|++|+|.+||.++.+.+.+.+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999643 235899999999999999999999999999999999999999999999999998888888999999
Q ss_pred ccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1082 LVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1082 iV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++||+|.+|..|++||+.++.+ ..+.+++.++++..+++++++.+|.|+++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 130 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDT 130 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcce
Confidence 9999999999999999998754 34567788888999999999999887753
No 447
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.86 E-value=8.9e-22 Score=218.22 Aligned_cols=127 Identities=28% Similarity=0.487 Sum_probs=112.8
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
..|+|+||+-+|+ +..+++|+||+|++||.++|.|||||||||++++|.||.+|++|+|.|||.||.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3699999999996 45689999999999999999999999999999999999999999999999999999988 599
Q ss_pred ccccccccccc-cccHHHHhccCCC--CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1080 IALVSQEPTLF-AGTIRENIAYGAS--DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1080 isiV~Qdp~LF-~gTIreNI~~g~~--~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|++|+|+--|| +-||+|||.||-. .... ++.+.++++.+++.+|-.+.|..+
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qL 137 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQL 137 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhh
Confidence 99999999999 5799999999853 1112 247899999999999988877643
No 448
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=2.9e-21 Score=203.05 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=118.4
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC-CHHHHhhhceEEecCCCCccccHHHHH
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL-QLKWLRSQMGLVSQEPALFATSIKENI 457 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~-~~~~~r~~i~~v~Q~~~l~~~ti~eni 457 (1133)
++++++++.+| +.+|+||||||||||+.+|.-.+..... ....|..+.++ ....-...|.+++|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 46778888887 8899999999999999999754332211 01112211110 00011345788888766554 2
Q ss_pred hcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH----hhCCCEEEEeCcccCCChH
Q 041277 458 LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI----IKAPRILLLDEATSALDSE 533 (1133)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal----~~~~~illlDE~ts~lD~~ 533 (1133)
+ ....+ ...+.++++. . ....+...+||||||||++||||+ +.+|+++||||||++||+.
T Consensus 84 ----~-~~~~~------~~~~~~~l~~-~----~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ----P-LCVLS------QDMARSFLTS-N----KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----c-CCHHH------HHHHHHHhcc-c----cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 1 11111 1122233333 1 123345568999999999999999 5899999999999999999
Q ss_pred HHHHHHHHHHHHhC----CCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 534 SERVVQEALDKAVV----GRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 534 ~~~~i~~~l~~~~~----~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
+...+.+.|.+..+ ++|+|++||+++.+..+|+|-+|..++
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999999987632 358999999999999999999998754
No 449
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=4.5e-21 Score=209.86 Aligned_cols=180 Identities=23% Similarity=0.391 Sum_probs=137.9
Q ss_pred EEEEcCCCCCCccccceeEEeeC-----CCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 366 VQFAYPSRPESIIFKDFCLTIPA-----GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 366 v~~~y~~~~~~~~l~~i~l~i~~-----g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
.-++|++- ...+.++.|++++ ||+++++||||-||||++++|+|.++|++|+ ..++ +++
T Consensus 341 ~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vS 404 (591)
T COG1245 341 TLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVS 404 (591)
T ss_pred eeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEe
Confidence 34556532 1246677777664 7899999999999999999999999999998 2222 589
Q ss_pred EEecCCC-CccccHHHHHhcCCCC-CCHHH-HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 441 LVSQEPA-LFATSIKENILFGKED-ASMEE-VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 441 ~v~Q~~~-l~~~ti~eni~~~~~~-~~~~~-~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
|=||--. -|++||++-+.-..+. ..... -.+.++-.++++.+++ ...+|||||.||+|||-||.++
T Consensus 405 yKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~-----------~v~~LSGGELQRvaIaa~L~re 473 (591)
T COG1245 405 YKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLER-----------PVDELSGGELQRVAIAAALSRE 473 (591)
T ss_pred ecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhc-----------ccccCCchhHHHHHHHHHhccc
Confidence 9999532 3889999987643322 11111 1233444455444433 3458999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeC
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD 572 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~ 572 (1133)
+++++||||.+.||.+.+-.+-++|++.. .++|.++|-|++-.+.. +||++|.+.
T Consensus 474 ADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 474 ADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99999999999999999999999998864 47899999999999987 999999863
No 450
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=2.2e-21 Score=206.34 Aligned_cols=117 Identities=31% Similarity=0.482 Sum_probs=104.7
Q ss_pred EEEEeEEEECCCCCC--CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1002 IELQNVHFAYPARPD--VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
|+++||+++|+++.+ .++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|+|++|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999964321 3599999999999999999999999999999999999999999999999 6
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+||||+|.+|++|++||+.++. ..++++++++++.+++.+++..+|.|++|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 119 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLT 119 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCcccc
Confidence 99999999999999999999863 24566788999999999999999988764
No 451
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.2e-21 Score=216.04 Aligned_cols=131 Identities=24% Similarity=0.468 Sum_probs=112.5
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
-|+++||+++|+.....++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642223589999999999999999999999999999999999999999999999999988888999999
Q ss_pred ccccccc--ccccccHHHHhccCCCC-CCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEP--TLFAGTIRENIAYGASD-EID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp--~LF~gTIreNI~~g~~~-~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|||+| .++..|++|||.++... ..+ ++.+.++++.+++.++..+.|..|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARL 141 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 9999998 36778999999986321 122 356888999999999888776543
No 452
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.85 E-value=1.9e-21 Score=206.43 Aligned_cols=123 Identities=29% Similarity=0.475 Sum_probs=109.7
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.++.+|++|+|+ +.++|+|+||+|++||.++|+||+|||||||+++|.|+..|.+|+|++||.|+.+++..++-+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999996 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-ccccccHHHHhccCCCC---------CCCHHHHHHHHHHcchHHHHhh
Q 041277 1081 ALVSQEP-TLFAGTIRENIAYGASD---------EIDESEIVEAAKAANAHDFIAG 1126 (1133)
Q Consensus 1081 siV~Qdp-~LF~gTIreNI~~g~~~---------~~sdeei~~Al~~a~l~dfI~~ 1126 (1133)
|||||++ .-|.-|++|=+.+|+-+ ..+++.+.+|++..++.++.++
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r 134 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR 134 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC
Confidence 9999996 56788999999999631 1123358889999999998764
No 453
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.85 E-value=1.7e-21 Score=188.94 Aligned_cols=123 Identities=31% Similarity=0.504 Sum_probs=108.8
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|.+++|.|+|..-+ =.++++|++||+|||+||||||||||++|+.||..|.+|+|+|+|+|....++. ++-+|
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999996432 367899999999999999999999999999999999999999999999888876 48899
Q ss_pred cccccccccc-ccHHHHhccCCCC-----CCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1082 LVSQEPTLFA-GTIRENIAYGASD-----EIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1082 iV~Qdp~LF~-gTIreNI~~g~~~-----~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+++||..||. -||++|+.+|..+ +...+.+..|+.++|+.+|..+||..+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~L 130 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcccc
Confidence 9999999996 5999999999632 344678999999999999999999754
No 454
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.2e-21 Score=201.37 Aligned_cols=123 Identities=26% Similarity=0.387 Sum_probs=107.7
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.+++++|+.+|++ ..||+|+||+|++||.|+||||||||||||++++.||.+|++|+|.+||.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999964 5699999999999999999999999999999999999999999999999998443 3679
Q ss_pred ccccccccccc-ccHHHHhccCCCCC-----CCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFA-GTIRENIAYGASDE-----IDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~-gTIreNI~~g~~~~-----~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+||+|++.||. -|++||+.+|.... -..+.+.++++.+|+.+|-.+.|..+
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qL 131 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQL 131 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcccc
Confidence 99999999998 59999999985311 12456888999999999999888754
No 455
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.7e-21 Score=204.67 Aligned_cols=128 Identities=30% Similarity=0.557 Sum_probs=113.9
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC-CCChhHHhhc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR-SYHLRSLRRH 1079 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~-~i~l~~LR~~ 1079 (1133)
-|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|.|.+||.|+. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999765 56999999999999999999999999999999999999999999999999998 4899999999
Q ss_pred cccccccc--ccccccHHHHhccCCCC-CCCHH----HHHHHHHHcchHHHHhhcccc
Q 041277 1080 IALVSQEP--TLFAGTIRENIAYGASD-EIDES----EIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1080 isiV~Qdp--~LF~gTIreNI~~g~~~-~~sde----ei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+|+|+|+| .+|..||.|.++||..+ ..+.+ .+.+|++.++++++-++-|..
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~ 138 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFN 138 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccc
Confidence 99999999 79999999999999643 23443 477889999999887666643
No 456
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.7e-21 Score=195.68 Aligned_cols=123 Identities=27% Similarity=0.476 Sum_probs=108.0
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC---hhHHh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH---LRSLR 1077 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~---l~~LR 1077 (1133)
.|+++||+-+||+ +..+|+||||+|++||.|||+||||||||||++.|.|+.||++|+|.++|.++..++ +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 456999999999999999999999999999999999999999999999999999888 77889
Q ss_pred hcccccccccccccc-cHHHHhccCCCC----------CC---CHHHHHHHHHHcchHHHHh
Q 041277 1078 RHIALVSQEPTLFAG-TIRENIAYGASD----------EI---DESEIVEAAKAANAHDFIA 1125 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~g-TIreNI~~g~~~----------~~---sdeei~~Al~~a~l~dfI~ 1125 (1133)
++||+|+|++.|-.. |+-+|+..|+-+ -. +.....+|++.+++.|+.-
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~ 142 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY 142 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH
Confidence 999999999999875 899999877532 12 2345778899999988754
No 457
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.85 E-value=2.4e-21 Score=208.10 Aligned_cols=129 Identities=27% Similarity=0.437 Sum_probs=108.9
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChh---HHhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLR---SLRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~---~LR~ 1078 (1133)
|+++||+++|++. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 23589999999999999999999999999999999999999999999999999876643 4789
Q ss_pred ccccccccccccc-ccHHHHhccCC-----CCCCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1079 HIALVSQEPTLFA-GTIRENIAYGA-----SDEIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~-gTIreNI~~g~-----~~~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++++|||+|.+|. .|++||+.++. +....++++.++++..++.++..+.|..|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 139 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQL 139 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 9999999999987 59999998742 11113467889999999998887766543
No 458
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.84 E-value=3e-21 Score=218.70 Aligned_cols=130 Identities=23% Similarity=0.370 Sum_probs=110.2
Q ss_pred EEEEeEEEECCCCC-CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---Hh
Q 041277 1002 IELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---LR 1077 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---LR 1077 (1133)
|+|+||+++|+++. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 79999999996322 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred hccccccccccccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1078 RHIALVSQEPTLFA-GTIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~-gTIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|++|||++.||. .|++||+.++.. ...+ ++++.++++.+++.++..+.|..|
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~L 141 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNL 141 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 89999999999995 799999987521 0112 345788999999998887776543
No 459
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=4.6e-21 Score=204.46 Aligned_cols=115 Identities=36% Similarity=0.609 Sum_probs=102.9
Q ss_pred cccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh
Q 041277 999 TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078 (1133)
Q Consensus 999 ~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~ 1078 (1133)
.+.++++|++++|+.. +.++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 3679999999999642 235899999999999999999999999999999999999999999999999999999889999
Q ss_pred cccccccccccccccHHHHhccCCCCCCCHHHHHHHHH
Q 041277 1079 HIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAK 1116 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~ 1116 (1133)
+++||||+|.+|++|++||+.+.+ ..+++++.++++
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~ 118 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR 118 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh
Confidence 999999999999999999998753 245667777766
No 460
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=4.5e-21 Score=195.56 Aligned_cols=126 Identities=29% Similarity=0.446 Sum_probs=106.5
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChh---HHh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLR---SLR 1077 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~---~LR 1077 (1133)
-|++++|+++|.+ ..||+||||+|++||.+||+|+||||||||++++.|+..|++|+|+|+|.||.+++-+ .+|
T Consensus 8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5999999999963 4599999999999999999999999999999999999999999999999999999865 469
Q ss_pred hcccccccccccccc-cHHHHhccCCC--CCCCHHHHHH----HHHHcchHHH-Hhhccc
Q 041277 1078 RHIALVSQEPTLFAG-TIRENIAYGAS--DEIDESEIVE----AAKAANAHDF-IAGLNE 1129 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~g-TIreNI~~g~~--~~~sdeei~~----Al~~a~l~df-I~~LP~ 1129 (1133)
+++|+++|..-||+. ||+||+.|--. ...+++++++ -++.+|+..- -+.+|.
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps 144 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPS 144 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch
Confidence 999999999999986 99999987211 2345555554 4577888776 444553
No 461
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6.3e-21 Score=211.80 Aligned_cols=129 Identities=31% Similarity=0.550 Sum_probs=112.2
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
-|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 23589999999999999999999999999999999999999999999999999988888899999
Q ss_pred ccccccc--ccccccHHHHhccCCCC-CC----CHHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEP--TLFAGTIRENIAYGASD-EI----DESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp--~LF~gTIreNI~~g~~~-~~----sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+||||+| .+|..|++||+.++... .. .++++.++++.+++.++..+.|..|
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 139 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhC
Confidence 9999999 68999999999986311 11 2356788999999998888777543
No 462
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=7.4e-21 Score=214.70 Aligned_cols=129 Identities=22% Similarity=0.364 Sum_probs=105.0
Q ss_pred ccEEEEeEEEECCCCC--CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCC------
Q 041277 1000 GNIELQNVHFAYPARP--DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY------ 1071 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i------ 1071 (1133)
.-|+++||+|+|+... +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999996421 23699999999999999999999999999999999999999999999999998753
Q ss_pred ----------ChhHHhhccccccccc--ccccccHHHHhccCCC-CCCCHH----HHHHHHHHcchH-HHHhhcc
Q 041277 1072 ----------HLRSLRRHIALVSQEP--TLFAGTIRENIAYGAS-DEIDES----EIVEAAKAANAH-DFIAGLN 1128 (1133)
Q Consensus 1072 ----------~l~~LR~~isiV~Qdp--~LF~gTIreNI~~g~~-~~~sde----ei~~Al~~a~l~-dfI~~LP 1128 (1133)
+...+|+++++|+|+| .+|++|++|||.++.. ...+++ .+.++++..++. ++..+-|
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 3567899999999998 6999999999988732 112332 345567777775 4555433
No 463
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.83 E-value=1.5e-20 Score=202.21 Aligned_cols=127 Identities=25% Similarity=0.383 Sum_probs=110.5
Q ss_pred EEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh----hHHhh
Q 041277 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL----RSLRR 1078 (1133)
Q Consensus 1003 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l----~~LR~ 1078 (1133)
...|+.|+|+.+ .++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567899999743 458999999999999999999999999999999999999999999999999876653 34678
Q ss_pred cccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1079 HIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
.++|++|+|.+|+.|++|||.++.+ .++++..++++..++.+++..+|.|++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 132 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP--FNKQRYKAVTDACSLQPDIDLLPFGDQT 132 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc--CCHHHHHHHHHHhCcHHHHHhCcCcccc
Confidence 8999999999999999999988643 3566778899999999999888887654
No 464
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.83 E-value=1e-20 Score=203.58 Aligned_cols=127 Identities=23% Similarity=0.377 Sum_probs=106.3
Q ss_pred EEEEeEEEECCCCCC-CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1002 IELQNVHFAYPARPD-VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
|+++||+++|+++.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999974321 259999999999999999999999999999999999999999999999999976 456789999
Q ss_pred cccccccccccc-cHHHHhccCCC-----CCCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGAS-----DEIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~-----~~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
++|||+|.+|.+ |++||+.+... ....++++.++++..++.+...+.+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVG 135 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhh
Confidence 999999999985 99999976321 11124567889999999887665443
No 465
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=9e-21 Score=206.05 Aligned_cols=129 Identities=24% Similarity=0.313 Sum_probs=107.3
Q ss_pred cEEEEeEEEECCCCC-CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---H
Q 041277 1001 NIELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---L 1076 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---L 1076 (1133)
-++++||+++|+++. ..++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.|+.+.+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997422 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-hcccccccccccccc-cHHHHhccCC-----CCCCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1077 R-RHIALVSQEPTLFAG-TIRENIAYGA-----SDEIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1077 R-~~isiV~Qdp~LF~g-TIreNI~~g~-----~~~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
| +.++||||+|.+|.+ |++||+.++. +....++++.++++..++.++..+.|.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 3 689999999999975 9999998631 111123568889999999887766554
No 466
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.83 E-value=7.9e-21 Score=205.82 Aligned_cols=123 Identities=34% Similarity=0.556 Sum_probs=106.4
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhc-----CCCCCeEEECCcccCCCC--hh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY-----DPLKGDVKIDDRDIRSYH--LR 1074 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y-----dp~~G~I~IdG~dI~~i~--l~ 1074 (1133)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.+||.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 35899999999999999999999999999999999999 999999999999998877 67
Q ss_pred HHhhcccccccccccccccHHHHhccCCCC-C-C----CHHHHHHHHHHcchHHHHhhc
Q 041277 1075 SLRRHIALVSQEPTLFAGTIRENIAYGASD-E-I----DESEIVEAAKAANAHDFIAGL 1127 (1133)
Q Consensus 1075 ~LR~~isiV~Qdp~LF~gTIreNI~~g~~~-~-~----sdeei~~Al~~a~l~dfI~~L 1127 (1133)
.+|+++++|||++.+|..|++||+.++... . . .++++.++++..++.+...+.
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhcc
Confidence 789999999999999999999999875311 1 1 245678899999998876654
No 467
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=5.6e-21 Score=208.07 Aligned_cols=125 Identities=28% Similarity=0.450 Sum_probs=106.4
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh---hHHhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL---RSLRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l---~~LR~ 1078 (1133)
|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 358999999999999999999999999999999999999999999999999988764 57889
Q ss_pred cccccccccccccc-cHHHHhccCCC--CCCC----HHHHHHHHHHcchHHHHhhccc
Q 041277 1079 HIALVSQEPTLFAG-TIRENIAYGAS--DEID----ESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~g-TIreNI~~g~~--~~~s----deei~~Al~~a~l~dfI~~LP~ 1129 (1133)
++++|||+|.+|.+ |++||+.++.. ...+ ++++.++++..++.++..+.|.
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPA 135 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChh
Confidence 99999999999986 99999987521 1122 3457778999999887766554
No 468
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.8e-21 Score=207.82 Aligned_cols=122 Identities=28% Similarity=0.502 Sum_probs=105.9
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcC---CCCCeEEECCcccCCCChhHHh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD---PLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd---p~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
.|+++||+++|++ .++|+|+||++++||.+||+|+||||||||+++|+|+++ |++|+|.+||.|+.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4889999999963 358999999999999999999999999999999999985 6899999999999998888899
Q ss_pred hcccccccccccccccHHHHhccCCC-------CCCCHHHHHHHHHHcchHHHHh
Q 041277 1078 RHIALVSQEPTLFAGTIRENIAYGAS-------DEIDESEIVEAAKAANAHDFIA 1125 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~gTIreNI~~g~~-------~~~sdeei~~Al~~a~l~dfI~ 1125 (1133)
++++|+||+|.+|..|++||+.++.. ....++++.++++..++++++.
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 133 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh
Confidence 99999999999999999999987521 0112346788899999976553
No 469
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=6.3e-20 Score=198.32 Aligned_cols=199 Identities=24% Similarity=0.413 Sum_probs=125.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh--ccCCCccEEEECCeecCCCCHHH---
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR--FYAPLGGEIILDGVSIDKLQLKW--- 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~--~~~~~~G~i~~~g~~~~~~~~~~--- 434 (1133)
.|.++|.+.+-.++ ..+.|-||.|-.|..+++|||||-|||||++-|.. +--|..=.+++..+.+..-+...
T Consensus 264 DIKiEnF~ISA~Gk---~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQGK---LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeecccc---eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 47778877776543 37899999999999999999999999999999874 22232223333332221100000
Q ss_pred -H---hhhceEEecCCCCc----c--ccHHHHHhcCCCCCCHHHHHHHHHHh-------chHHHHHhCCCcccccccCCC
Q 041277 435 -L---RSQMGLVSQEPALF----A--TSIKENILFGKEDASMEEVIEAAKAS-------NAHNFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 435 -~---r~~i~~v~Q~~~l~----~--~ti~eni~~~~~~~~~~~~~~~~~~~-------~~~~~i~~l~~g~~t~~~~~g 497 (1133)
+ .++..++-.+.-|. . .|+.|-+ +++.+-++.. .+...+..| |++..+-+++
T Consensus 341 vl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl---------~~v~~ELraiGA~sAEarARRILAGL--GFskEMQ~rP 409 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKLMSQIEEGDTTAAERL---------KEVADELRAIGADSAEARARRILAGL--GFSKEMQERP 409 (807)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHH---------HHHHHHHHHhccccchhHHHHHHhhc--CCChhHhcCC
Confidence 0 01111111111100 0 0111111 1111111111 122233333 5666666665
Q ss_pred C-CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 498 V-QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 498 ~-~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
. .+|||-|-||+|||||+..|-+|.|||||.+||....--+-+.|+.+ .+|.++|+|+-.++.. |..|+.|++-+
T Consensus 410 t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qk 486 (807)
T KOG0066|consen 410 TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQK 486 (807)
T ss_pred ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhh
Confidence 4 69999999999999999999999999999999998766666666665 4799999999999987 88888887644
No 470
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.5e-20 Score=205.14 Aligned_cols=125 Identities=34% Similarity=0.572 Sum_probs=108.4
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+|+|++ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999988888899999
Q ss_pred cccccccccccccHHHHhccCCC-CCCCHHHHHHHHHHcchH-HHHhhcc
Q 041277 1081 ALVSQEPTLFAGTIRENIAYGAS-DEIDESEIVEAAKAANAH-DFIAGLN 1128 (1133)
Q Consensus 1081 siV~Qdp~LF~gTIreNI~~g~~-~~~sdeei~~Al~~a~l~-dfI~~LP 1128 (1133)
++|||+|.+|+.|++||+.++.. ....++++.++++..++. ++..+-|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDV 129 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCc
Confidence 99999999999999999987632 112345788888998885 5555443
No 471
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.83 E-value=8.7e-21 Score=201.98 Aligned_cols=124 Identities=21% Similarity=0.433 Sum_probs=105.8
Q ss_pred EEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccc
Q 041277 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082 (1133)
Q Consensus 1003 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isi 1082 (1133)
+++||+++|++. .++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.+||.++.. ...|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 478999999631 358999999999999999999999999999999999999999999999998864 567889999
Q ss_pred ccccc--ccccccHHHHhccCCCC-CCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1083 VSQEP--TLFAGTIRENIAYGASD-EIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1083 V~Qdp--~LF~gTIreNI~~g~~~-~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|||+| .+|+.|++||+.++.+. ...++++.++++..++.++..+.|..|
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 127 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL 127 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhC
Confidence 99998 47889999999886431 123457899999999998887777544
No 472
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.4e-20 Score=209.34 Aligned_cols=130 Identities=22% Similarity=0.460 Sum_probs=112.2
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
-|+++||+++|+.+ ..++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|++||.++.+.+...+|+.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999642 33599999999999999999999999999999999999999999999999999988888889999
Q ss_pred ccccccc--ccccccHHHHhccCCCC-CCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEP--TLFAGTIRENIAYGASD-EID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp--~LF~gTIreNI~~g~~~-~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+||||+| .+++.|++|||.++... ..+ ++++.++++..++.+++.+.|..+
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRL 141 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccC
Confidence 9999998 57788999999875311 122 345788999999999998877644
No 473
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.4e-20 Score=210.44 Aligned_cols=128 Identities=30% Similarity=0.504 Sum_probs=106.1
Q ss_pred EEEEeEEEECCCCC--CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC--hhHHh
Q 041277 1002 IELQNVHFAYPARP--DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH--LRSLR 1077 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~--l~~LR 1077 (1133)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999997421 136999999999999999999999999999999999999999999999999998754 45789
Q ss_pred hccccccccc--ccccccHHHHhccCCC-CCCCH----HHHHHHHHHcchH--HHHhhccc
Q 041277 1078 RHIALVSQEP--TLFAGTIRENIAYGAS-DEIDE----SEIVEAAKAANAH--DFIAGLNE 1129 (1133)
Q Consensus 1078 ~~isiV~Qdp--~LF~gTIreNI~~g~~-~~~sd----eei~~Al~~a~l~--dfI~~LP~ 1129 (1133)
++|+||||+| .+|+.|++|||.++.. ...+. +++.++++.+++. ++..+.|.
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 143 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPF 143 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcc
Confidence 9999999998 5889999999987631 11232 3577889999986 55544443
No 474
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.4e-20 Score=201.43 Aligned_cols=123 Identities=25% Similarity=0.428 Sum_probs=105.2
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+|+|++ .++|+|+||++++| .+||+||||||||||+++|.|+++|++|+|.+||.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999963 35899999999999 99999999999999999999999999999999999998877 78899999
Q ss_pred ccccccccccc-cHHHHhccCC-----CCCCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1082 LVSQEPTLFAG-TIRENIAYGA-----SDEIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1082 iV~Qdp~LF~g-TIreNI~~g~-----~~~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
+|||+|.+|.+ |++||+.+.. +....++++.++++..++.++.++.|.
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIG 129 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchh
Confidence 99999999986 9999997631 111124567889999999887665443
No 475
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.4e-20 Score=210.43 Aligned_cols=129 Identities=29% Similarity=0.469 Sum_probs=106.0
Q ss_pred cEEEEeEEEECCCCC--CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCC----Chh
Q 041277 1001 NIELQNVHFAYPARP--DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY----HLR 1074 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i----~l~ 1074 (1133)
.|+++||+|+|++++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996422 13699999999999999999999999999999999999999999999999999764 346
Q ss_pred HHhhccccccccc--ccccccHHHHhccCCCC-CCC----HHHHHHHHHHcchH-HHHhhccc
Q 041277 1075 SLRRHIALVSQEP--TLFAGTIRENIAYGASD-EID----ESEIVEAAKAANAH-DFIAGLNE 1129 (1133)
Q Consensus 1075 ~LR~~isiV~Qdp--~LF~gTIreNI~~g~~~-~~s----deei~~Al~~a~l~-dfI~~LP~ 1129 (1133)
.+|++|+||||+| .+|..|++|||.++... ..+ ++.+.++++..++. ++..+.|.
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 144 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPF 144 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcc
Confidence 7899999999998 68999999999986311 122 34567788888886 55554443
No 476
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.82 E-value=1.5e-20 Score=201.75 Aligned_cols=127 Identities=30% Similarity=0.432 Sum_probs=108.0
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChh---HHhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLR---SLRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~---~LR~ 1078 (1133)
|+++|++++|++ +.++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 23589999999999999999999999999999999999999999999999999887643 4788
Q ss_pred ccccccccccccc-ccHHHHhccCCC-----CCCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1079 HIALVSQEPTLFA-GTIRENIAYGAS-----DEIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~-gTIreNI~~g~~-----~~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
++++|||+|.+|. .|++||+.++.. ....+++++++++..++.+...+.|..
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQ 137 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 9999999999996 699999987521 112346788999999998887766543
No 477
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.82 E-value=1.4e-20 Score=201.97 Aligned_cols=128 Identities=29% Similarity=0.427 Sum_probs=107.4
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh---hHHhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL---RSLRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l---~~LR~ 1078 (1133)
|+++||+++|+++ .++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 5789999999632 358999999999999999999999999999999999999999999999999987764 35788
Q ss_pred ccccccccccccc-ccHHHHhccCCC-CCC----CHHHHHHHHHHcchHHHHhhccccc
Q 041277 1079 HIALVSQEPTLFA-GTIRENIAYGAS-DEI----DESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~-gTIreNI~~g~~-~~~----sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++++|||+|.+|. .|++||+.++.. ... .++++.++++..++.+...+.|..+
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 137 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAEL 137 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhc
Confidence 9999999999998 499999987521 011 2356788999999988777666543
No 478
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2e-20 Score=208.32 Aligned_cols=131 Identities=32% Similarity=0.539 Sum_probs=111.1
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
-|+++||+++|++....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334589999999999999999999999999999999999999999999999999888888899999
Q ss_pred ccccccc--ccccccHHHHhccCCC-CCCCH----HHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEP--TLFAGTIRENIAYGAS-DEIDE----SEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp--~LF~gTIreNI~~g~~-~~~sd----eei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+||||+| .+++.|+.|||.++.. ...+. +++.++++.+++.++..+.|..|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARL 141 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 9999998 4778999999987521 12233 34678889999988877665443
No 479
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.82 E-value=1.3e-20 Score=202.90 Aligned_cols=128 Identities=30% Similarity=0.442 Sum_probs=106.3
Q ss_pred EEEEeEEEECCCCC-CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH----H
Q 041277 1002 IELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS----L 1076 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~----L 1076 (1133)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 146999999999999999999999999999999999999999999999999998877433 4
Q ss_pred hhcccccccccccccc-cHHHHhccCCC-CCC----CHHHHHHHHHHcchHHHHhhccc
Q 041277 1077 RRHIALVSQEPTLFAG-TIRENIAYGAS-DEI----DESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF~g-TIreNI~~g~~-~~~----sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
|+++++|||+|.+|.+ |++||+.++.. ... .++++.++++..++.++..+.|.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChh
Confidence 6789999999999986 99999987532 111 24568889999999877665543
No 480
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.6e-20 Score=210.03 Aligned_cols=128 Identities=25% Similarity=0.476 Sum_probs=105.8
Q ss_pred EEEEeEEEECCCCCC--CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC----CChhH
Q 041277 1002 IELQNVHFAYPARPD--VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS----YHLRS 1075 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~----i~l~~ 1075 (1133)
|+|+||+|+|+.... .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999973211 258999999999999999999999999999999999999999999999999863 34667
Q ss_pred Hhhccccccccc--ccccccHHHHhccCCCC-CCC----HHHHHHHHHHcchH-HHHhhccc
Q 041277 1076 LRRHIALVSQEP--TLFAGTIRENIAYGASD-EID----ESEIVEAAKAANAH-DFIAGLNE 1129 (1133)
Q Consensus 1076 LR~~isiV~Qdp--~LF~gTIreNI~~g~~~-~~s----deei~~Al~~a~l~-dfI~~LP~ 1129 (1133)
+|+++++|+|+| .+|..|+.||+.++... ..+ ++++.++++.+++. ++..+.|.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF 143 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc
Confidence 899999999998 79999999999987321 122 33567788888984 56555544
No 481
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.9e-20 Score=207.89 Aligned_cols=130 Identities=28% Similarity=0.564 Sum_probs=109.9
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++|++++|+++ +.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 59999999999632 34689999999999999999999999999999999999999999999999999888888899999
Q ss_pred ccccccc--ccccccHHHHhccCCCC-CCCH----HHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEP--TLFAGTIRENIAYGASD-EIDE----SEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp--~LF~gTIreNI~~g~~~-~~sd----eei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+||||+| .++..|++|||.++... ..+. +.+.++++..++.++..+.|..|
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 143 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNL 143 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccC
Confidence 9999998 46678999999875211 1222 24677889999998887766543
No 482
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.82 E-value=7e-20 Score=188.80 Aligned_cols=85 Identities=27% Similarity=0.296 Sum_probs=77.3
Q ss_pred HHhCCCcccccccCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEec
Q 041277 482 IRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII----KAPRILLLDEATSALDSESERVVQEALDKAVV-GRTTIIIAH 556 (1133)
Q Consensus 482 i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~----~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH 556 (1133)
+..+|+|..|++ ||||||||++|||++. .+|+++++|||+++||+.....+.+.+.+..+ ++|+|++||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 556799988887 9999999999999995 69999999999999999999999999988754 689999999
Q ss_pred CcchhhcCCEEEEEeC
Q 041277 557 RLSTIRNADVIAVVQD 572 (1133)
Q Consensus 557 ~~~~~~~~d~i~~l~~ 572 (1133)
+.+.+..+|+++.+.+
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9998888999999975
No 483
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.82 E-value=2.2e-20 Score=201.36 Aligned_cols=125 Identities=20% Similarity=0.321 Sum_probs=104.0
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|++. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5799999999642 145999999999999999999999999999999999999999999999999987643 67788999
Q ss_pred ccccccccc-cccHHHHhccCC-----CCCCCHHHHHHHHHHcchHHHHhhcc
Q 041277 1082 LVSQEPTLF-AGTIRENIAYGA-----SDEIDESEIVEAAKAANAHDFIAGLN 1128 (1133)
Q Consensus 1082 iV~Qdp~LF-~gTIreNI~~g~-----~~~~sdeei~~Al~~a~l~dfI~~LP 1128 (1133)
+|||+|.+| +.|++||+.++. +....++++.++++..++.+...+.|
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 131 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA 131 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh
Confidence 999999999 679999998642 11111346778889889877665544
No 484
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.82 E-value=2.3e-20 Score=199.34 Aligned_cols=123 Identities=20% Similarity=0.330 Sum_probs=106.0
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|++ .++|+|+||++++||.++|+|++|||||||+++|.|+.+|++|+|.+||.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 579999999953 3599999999999999999999999999999999999999999999999998765 56788999
Q ss_pred ccccccccc-cccHHHHhccCCC-CCCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1082 LVSQEPTLF-AGTIRENIAYGAS-DEIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1082 iV~Qdp~LF-~gTIreNI~~g~~-~~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
+|||++.+| +.|++||+.++.. ...+++++.++++..++.+...+.|.
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 125 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK 125 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHh
Confidence 999999887 5799999977521 12356788999999999887766443
No 485
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.5e-20 Score=202.79 Aligned_cols=129 Identities=26% Similarity=0.375 Sum_probs=107.9
Q ss_pred EEEEeEEEECCCCC-CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChh---HHh
Q 041277 1002 IELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLR---SLR 1077 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~---~LR 1077 (1133)
|+++||+++|+++. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 12699999999999999999999999999999999999999999999999999877654 358
Q ss_pred hccccccccccccc-ccHHHHhccCCC--C---CCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1078 RHIALVSQEPTLFA-GTIRENIAYGAS--D---EIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~-gTIreNI~~g~~--~---~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+++++|||+|.+|. .|++||+.++.. . ...++++.++++..++.+...+.|..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQ 140 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhh
Confidence 89999999999997 699999986421 0 11245788899999998887765543
No 486
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.82 E-value=4.1e-20 Score=199.58 Aligned_cols=119 Identities=24% Similarity=0.447 Sum_probs=104.7
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
-|+++||+++|++ .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+++...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999998888899999
Q ss_pred cccccccccccccHHHHhccCC---CCCCCHHHHHHHHHHcchHH
Q 041277 1081 ALVSQEPTLFAGTIRENIAYGA---SDEIDESEIVEAAKAANAHD 1122 (1133)
Q Consensus 1081 siV~Qdp~LF~gTIreNI~~g~---~~~~sdeei~~Al~~a~l~d 1122 (1133)
++|||+|.+|..|++||+.++. .....++++.++++..++.+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~ 128 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD 128 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh
Confidence 9999999999999999997631 11123456778899988853
No 487
>PRK10908 cell division protein FtsE; Provisional
Probab=99.82 E-value=2.7e-20 Score=200.89 Aligned_cols=126 Identities=25% Similarity=0.379 Sum_probs=105.3
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---Hhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---LRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---LR~ 1078 (1133)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 235899999999999999999999999999999999999999999999999998876544 789
Q ss_pred ccccccccccc-ccccHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccc
Q 041277 1079 HIALVSQEPTL-FAGTIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1079 ~isiV~Qdp~L-F~gTIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~ 1129 (1133)
.++||||+|.+ +..|++||+.++.. ...+ ++++.++++..++.+...+.|.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI 136 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCch
Confidence 99999999987 56799999987521 1122 2356778899999887766554
No 488
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.82 E-value=3.7e-20 Score=200.74 Aligned_cols=131 Identities=21% Similarity=0.324 Sum_probs=108.9
Q ss_pred cEEEEeEEEECCCCCC-CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---H
Q 041277 1001 NIELQNVHFAYPARPD-VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---L 1076 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---L 1076 (1133)
-|+++||+++|+++.. .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+.+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964222 25899999999999999999999999999999999999999999999999998887654 2
Q ss_pred -hhcccccccccccccc-cHHHHhccCC-----CCCCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1077 -RRHIALVSQEPTLFAG-TIRENIAYGA-----SDEIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1077 -R~~isiV~Qdp~LF~g-TIreNI~~g~-----~~~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++++++|||+|.+|.+ |++||+.++. +.....+++.++++..++.++..+.|..|
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 147 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQL 147 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhC
Confidence 3689999999999985 9999997631 11112457888999999998887766543
No 489
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.7e-20 Score=206.15 Aligned_cols=128 Identities=28% Similarity=0.498 Sum_probs=110.8
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999988888999999
Q ss_pred cccccccccccc-cHHHHhccCCC---------CCCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGAS---------DEIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~---------~~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|||++.+|.+ |++||+.++.. ....++++.++++.+++.+++.+.|..+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 148 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccC
Confidence 999999877665 99999987531 0112456889999999988877766543
No 490
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.82 E-value=3.7e-20 Score=202.88 Aligned_cols=126 Identities=28% Similarity=0.453 Sum_probs=105.8
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh---hHHhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL---RSLRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l---~~LR~ 1078 (1133)
|+++||+++|+. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 789999999961 2358999999999999999999999999999999999999999999999999987664 45789
Q ss_pred ccccccccccccc-ccHHHHhccCCCC-------------CCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1079 HIALVSQEPTLFA-GTIRENIAYGASD-------------EIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~-gTIreNI~~g~~~-------------~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
++++|||++.+|. .|++||+.++... ...++++.++++..++.++..+.|.
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD 144 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 9999999999886 6999999875311 1124567888999999877665443
No 491
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.9e-20 Score=200.66 Aligned_cols=123 Identities=30% Similarity=0.475 Sum_probs=104.1
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|++ .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+.+ ..|++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 578999999963 35899999999999999999999999999999999999999999999999998654 3578999
Q ss_pred cccccccccc-ccHHHHhccCCCC-----CCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1082 LVSQEPTLFA-GTIRENIAYGASD-----EIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1082 iV~Qdp~LF~-gTIreNI~~g~~~-----~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
+|||+|.+|. .|++||+.++... ...++++.++++..++.++..+.|.
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH 129 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChh
Confidence 9999999886 6999999875221 1123467889999999888776554
No 492
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=4.2e-20 Score=195.73 Aligned_cols=121 Identities=22% Similarity=0.402 Sum_probs=102.9
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|++||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 789999999963 358999999999999999999999999999999999999999999999999875 3467889999
Q ss_pred ccccccccc-cccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhh
Q 041277 1082 LVSQEPTLF-AGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAG 1126 (1133)
Q Consensus 1082 iV~Qdp~LF-~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~ 1126 (1133)
++||++.+| ..|++||+.++......++++.++++..++.+....
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 123 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDY 123 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhC
Confidence 999999986 579999998763111234568888888888665543
No 493
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=5.2e-20 Score=205.38 Aligned_cols=131 Identities=24% Similarity=0.456 Sum_probs=111.9
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCC---CeEEECCcccCCCChhHH
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK---GDVKIDDRDIRSYHLRSL 1076 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~---G~I~IdG~dI~~i~l~~L 1076 (1133)
+.|+++|++|+|++. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 469999999999642 2358999999999999999999999999999999999999987 899999999988888888
Q ss_pred hhccccccccc--ccccccHHHHhccCCCC-CCCH----HHHHHHHHHcchHHHHhhccccc
Q 041277 1077 RRHIALVSQEP--TLFAGTIRENIAYGASD-EIDE----SEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1077 R~~isiV~Qdp--~LF~gTIreNI~~g~~~-~~sd----eei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|++++||||+| .+|+.|++|||.++... ..+. +++.++++..++.++..+.|..+
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 144 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANL 144 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 99999999999 46789999999876321 2233 45788999999999888776543
No 494
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3.6e-20 Score=202.78 Aligned_cols=126 Identities=29% Similarity=0.461 Sum_probs=106.5
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC---hhHHhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH---LRSLRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~---l~~LR~ 1078 (1133)
++++||+++|++ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 578999999963 145899999999999999999999999999999999999999999999999998877 567889
Q ss_pred ccccccccccccc-ccHHHHhccCCCC-------------CCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1079 HIALVSQEPTLFA-GTIRENIAYGASD-------------EIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~-gTIreNI~~g~~~-------------~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
++++|||++.+|. .|++||+.++... ...++++.++++..++.+...+.|.
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD 143 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc
Confidence 9999999999887 6999999864211 1124567888999999877665443
No 495
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=5.7e-20 Score=191.30 Aligned_cols=128 Identities=30% Similarity=0.435 Sum_probs=105.1
Q ss_pred EEEEeEEEECCCCCC-CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---H-
Q 041277 1002 IELQNVHFAYPARPD-VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---L- 1076 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---L- 1076 (1133)
++++||+-.|..... ..+|+|+||+|++||.|||+||||||||||+++|.++-.|++|.|.++|.|+..++-+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 679999999964322 46999999999999999999999999999999999999999999999999999998433 3
Q ss_pred hhcccccccccccccc-cHHHHhcc----CCCCC-CCHHHHHHHHHHcchHHHHh-hccc
Q 041277 1077 RRHIALVSQEPTLFAG-TIRENIAY----GASDE-IDESEIVEAAKAANAHDFIA-GLNE 1129 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF~g-TIreNI~~----g~~~~-~sdeei~~Al~~a~l~dfI~-~LP~ 1129 (1133)
|++||+|+|+..|+.. |++|||.+ ..... ..++.+.+.++..++.+... +.|.
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~ 141 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPS 141 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCch
Confidence 5679999999998865 99999984 21111 12456777888889987766 5564
No 496
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.82 E-value=2e-19 Score=177.28 Aligned_cols=211 Identities=25% Similarity=0.357 Sum_probs=157.0
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC-CCH----
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK-LQL---- 432 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~-~~~---- 432 (1133)
+..|++.++.|+|+... |++-|+|++++.|....+||.||||||||+++|.|-.-...|.|.+.|.+--. -..
T Consensus 11 ~~aievsgl~f~y~~~d--P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD--PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccCC--ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 45799999999998643 68999999999999999999999999999999999877777999999976432 111
Q ss_pred ------HHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 433 ------KWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 433 ------~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
.+|++..++--.-|.--.-++.+ +.||-...+.++-.+..+. +|-.+.-+-..+|-|||+
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sae~-mifgV~g~dp~Rre~LI~i-------------LDIdl~WRmHkvSDGqrR 154 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVGGDDPERREKLIDI-------------LDIDLRWRMHKVSDGQRR 154 (291)
T ss_pred ceeEecccccccccccccccccccccHHH-HHhhccCCChhHhhhhhhh-------------eeccceEEEeeccccchh
Confidence 12344444333222111224433 3344332222222221111 233344456789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHH--hCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKA--VVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~--~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|+-|+..|++.=++|+|||.|--||...+..+.+.+++. .+|.|++..||-.+-++. +.+++.+.+|+++..-++++
T Consensus 155 RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~ 234 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQK 234 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccch
Confidence 999999999999999999999999999999999999875 368999999999998876 99999999999987544444
Q ss_pred h
Q 041277 584 L 584 (1133)
Q Consensus 584 l 584 (1133)
+
T Consensus 235 i 235 (291)
T KOG2355|consen 235 I 235 (291)
T ss_pred h
Confidence 3
No 497
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.81 E-value=3.7e-20 Score=199.81 Aligned_cols=129 Identities=24% Similarity=0.353 Sum_probs=106.2
Q ss_pred EEEEeEEEECCCCC-CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---Hh
Q 041277 1002 IELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---LR 1077 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---LR 1077 (1133)
|+++||+++|++.. ..++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.|+.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996422 236899999999999999999999999999999999999999999999999998887654 34
Q ss_pred -hccccccccccccc-ccHHHHhccCCC----C-CCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1078 -RHIALVSQEPTLFA-GTIRENIAYGAS----D-EIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1078 -~~isiV~Qdp~LF~-gTIreNI~~g~~----~-~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
++++||||+|.+|. .|++||+.++.. + ...++++.++++..++++...+.|..
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 141 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSE 141 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 68999999999995 699999986311 1 11134677889999998777665543
No 498
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.9e-20 Score=205.98 Aligned_cols=128 Identities=22% Similarity=0.420 Sum_probs=110.1
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
++++||+++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 34899999999999999999999999999999999999999999999999998888888999999
Q ss_pred cccccc--ccccccHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1082 LVSQEP--TLFAGTIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1082 iV~Qdp--~LF~gTIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+|||+| .+|+.|++||+.++.. ...+ ++.+.++++..++.++..+.|..|
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHL 138 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 999998 4888999999987531 1122 345788999999998887776543
No 499
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.81 E-value=3.2e-20 Score=199.06 Aligned_cols=125 Identities=26% Similarity=0.451 Sum_probs=104.7
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC--CChhHHhhc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS--YHLRSLRRH 1079 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~--i~l~~LR~~ 1079 (1133)
|+++||+++|++ .++|+|+||+++|||++||+||+|||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 578999999964 358999999999999999999999999999999999999999999999999853 455678999
Q ss_pred cccccccccccc-ccHHHHhccCCC--CCC----CHHHHHHHHHHcchHHHHhhccc
Q 041277 1080 IALVSQEPTLFA-GTIRENIAYGAS--DEI----DESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1080 isiV~Qdp~LF~-gTIreNI~~g~~--~~~----sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
++||||+|.+|. .|++||+.++.. ... .++++.++++..++.+...+.|.
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 134 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA 134 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCcc
Confidence 999999999986 699999987521 111 23457778888888877766554
No 500
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.81 E-value=5.7e-20 Score=194.82 Aligned_cols=122 Identities=20% Similarity=0.374 Sum_probs=105.9
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
++++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++...+ ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 578999999963 35899999999999999999999999999999999999999999999999987654 56889999
Q ss_pred ccccccccc-cccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcc
Q 041277 1082 LVSQEPTLF-AGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLN 1128 (1133)
Q Consensus 1082 iV~Qdp~LF-~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP 1128 (1133)
++||++.++ +.|++||+.+..+ ..+++++.++++..++.++..+.+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~ 123 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDRPV 123 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcCch
Confidence 999999886 6899999987643 346778899999999987765443
Done!