Query 041277
Match_columns 1133
No_of_seqs 970 out of 4649
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:59:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1E-168 5E-173 1660.5 122.1 1115 14-1133 55-1209(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 2E-149 8E-154 1473.6 104.1 1114 17-1133 31-1163(1284)
3 4f4c_A Multidrug resistance pr 100.0 6E-90 2.1E-94 910.6 55.6 576 19-601 738-1318(1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 5.4E-87 1.8E-91 816.9 71.7 568 21-600 11-579 (587)
5 4a82_A Cystic fibrosis transme 100.0 1E-86 3.5E-91 814.8 68.7 573 21-599 2-576 (578)
6 3qf4_B Uncharacterized ABC tra 100.0 1.2E-86 4.1E-91 816.6 65.9 569 18-600 22-591 (598)
7 2yl4_A ATP-binding cassette SU 100.0 1.6E-84 5.6E-89 798.8 75.2 574 20-600 6-584 (595)
8 3b5x_A Lipid A export ATP-bind 100.0 4.5E-84 1.6E-88 792.8 75.3 568 19-600 11-580 (582)
9 3b60_A Lipid A export ATP-bind 100.0 5.6E-84 1.9E-88 792.0 73.7 568 19-600 11-580 (582)
10 3g5u_A MCG1178, multidrug resi 100.0 4E-80 1.4E-84 815.0 56.0 581 19-603 691-1274(1284)
11 3qf4_A ABC transporter, ATP-bi 100.0 2.8E-60 9.7E-65 580.8 53.0 460 666-1133 12-471 (587)
12 3qf4_B Uncharacterized ABC tra 100.0 6.8E-60 2.3E-64 579.3 51.1 462 662-1133 22-483 (598)
13 3nh6_A ATP-binding cassette SU 100.0 3.5E-62 1.2E-66 543.4 26.9 278 320-601 14-291 (306)
14 4a82_A Cystic fibrosis transme 100.0 9.7E-60 3.3E-64 576.3 50.3 464 665-1133 2-469 (578)
15 2yl4_A ATP-binding cassette SU 100.0 1.3E-58 4.4E-63 568.8 58.7 467 664-1133 6-475 (595)
16 3b5x_A Lipid A export ATP-bind 100.0 5.5E-58 1.9E-62 561.7 60.4 461 663-1133 11-472 (582)
17 3b60_A Lipid A export ATP-bind 100.0 6.7E-58 2.3E-62 561.0 55.7 462 663-1133 11-472 (582)
18 2ff7_A Alpha-hemolysin translo 100.0 1.6E-52 5.4E-57 455.2 30.5 240 359-599 6-245 (247)
19 2ghi_A Transport protein; mult 100.0 9.4E-52 3.2E-56 452.7 29.5 240 359-600 16-255 (260)
20 2ixe_A Antigen peptide transpo 100.0 2.6E-51 8.9E-56 451.6 28.4 241 358-599 14-257 (271)
21 1mv5_A LMRA, multidrug resista 100.0 7E-52 2.4E-56 450.1 20.1 236 361-599 2-238 (243)
22 3gd7_A Fusion complex of cysti 100.0 2.7E-49 9.3E-54 453.4 26.9 234 358-594 17-250 (390)
23 2cbz_A Multidrug resistance-as 100.0 3.1E-48 1.1E-52 419.1 24.1 225 360-600 3-230 (237)
24 2pze_A Cystic fibrosis transme 100.0 5E-48 1.7E-52 415.6 25.2 221 359-595 5-226 (229)
25 3tui_C Methionine import ATP-b 100.0 6E-48 2E-52 435.2 21.7 225 359-594 23-261 (366)
26 3gfo_A Cobalt import ATP-bindi 100.0 1.5E-47 5.1E-52 420.8 21.7 214 360-586 7-233 (275)
27 3tif_A Uncharacterized ABC tra 100.0 1.8E-47 6.2E-52 412.6 19.3 215 361-585 2-233 (235)
28 1ji0_A ABC transporter; ATP bi 100.0 1.7E-46 5.7E-51 406.7 23.5 218 360-586 6-228 (240)
29 3fvq_A Fe(3+) IONS import ATP- 100.0 1.2E-46 4.2E-51 424.7 22.4 220 360-593 4-235 (359)
30 2olj_A Amino acid ABC transpor 100.0 1.2E-46 4.1E-51 411.3 19.9 213 360-586 24-248 (263)
31 4g1u_C Hemin import ATP-bindin 100.0 2E-46 7E-51 411.0 21.7 213 360-586 11-237 (266)
32 3rlf_A Maltose/maltodextrin im 100.0 1.4E-46 4.7E-51 427.0 19.9 219 360-594 3-231 (381)
33 1b0u_A Histidine permease; ABC 100.0 4.4E-46 1.5E-50 408.3 20.3 213 360-586 6-242 (262)
34 1g6h_A High-affinity branched- 100.0 1.2E-45 4.3E-50 404.2 22.4 214 360-583 7-239 (257)
35 2pcj_A ABC transporter, lipopr 100.0 8E-46 2.7E-50 397.1 19.8 208 360-581 4-223 (224)
36 2yyz_A Sugar ABC transporter, 100.0 1.4E-45 5E-50 417.9 23.0 217 360-592 3-229 (359)
37 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-45 3.7E-50 402.5 20.7 213 359-586 14-235 (256)
38 2it1_A 362AA long hypothetical 100.0 1.1E-45 3.8E-50 419.3 20.2 217 360-592 3-229 (362)
39 1z47_A CYSA, putative ABC-tran 100.0 1.7E-45 5.7E-50 416.1 21.3 218 359-592 13-241 (355)
40 2ihy_A ABC transporter, ATP-bi 100.0 1.2E-45 4E-50 407.5 19.2 214 359-586 20-252 (279)
41 1v43_A Sugar-binding transport 100.0 3.4E-45 1.2E-49 416.8 22.7 217 360-592 11-237 (372)
42 2yz2_A Putative ABC transporte 100.0 5.8E-45 2E-49 400.6 23.5 212 361-586 3-227 (266)
43 2bbs_A Cystic fibrosis transme 100.0 4.1E-45 1.4E-49 404.5 21.9 237 333-594 17-254 (290)
44 3d31_A Sulfate/molybdate ABC t 100.0 4.4E-45 1.5E-49 412.8 21.7 215 361-592 2-223 (348)
45 2onk_A Molybdate/tungstate ABC 100.0 4.8E-45 1.7E-49 393.8 20.7 207 361-586 2-216 (240)
46 1oxx_K GLCV, glucose, ABC tran 100.0 3.1E-45 1.1E-49 415.9 20.0 219 360-592 3-236 (353)
47 1g29_1 MALK, maltose transport 100.0 6.2E-45 2.1E-49 415.9 20.0 217 360-592 3-235 (372)
48 2qi9_C Vitamin B12 import ATP- 100.0 1.8E-44 6.2E-49 391.2 22.5 208 360-586 4-222 (249)
49 2iw3_A Elongation factor 3A; a 100.0 2.6E-43 9E-48 439.7 33.8 196 359-585 434-634 (986)
50 2d2e_A SUFC protein; ABC-ATPas 100.0 1.1E-44 3.8E-49 394.9 18.7 210 361-583 4-230 (250)
51 2zu0_C Probable ATP-dependent 100.0 2.2E-43 7.5E-48 387.9 23.1 216 360-585 20-253 (267)
52 3bk7_A ABC transporter ATP-bin 100.0 3E-44 1E-48 436.3 16.1 193 364-573 95-304 (607)
53 2pjz_A Hypothetical protein ST 100.0 8.7E-44 3E-48 388.7 17.4 207 361-586 2-215 (263)
54 2nq2_C Hypothetical ABC transp 100.0 1.5E-43 5.3E-48 385.6 18.2 200 360-586 4-217 (253)
55 1yqt_A RNAse L inhibitor; ATP- 100.0 1.5E-43 5.2E-48 426.5 13.7 196 361-573 21-234 (538)
56 1sgw_A Putative ABC transporte 100.0 1.1E-42 3.9E-47 367.8 13.5 194 360-575 10-210 (214)
57 3ozx_A RNAse L inhibitor; ATP 100.0 1.1E-41 3.9E-46 408.6 13.7 191 365-573 4-213 (538)
58 3ux8_A Excinuclease ABC, A sub 100.0 2.7E-40 9.3E-45 412.0 20.7 201 376-585 31-297 (670)
59 3j16_B RLI1P; ribosome recycli 100.0 2.5E-39 8.7E-44 392.0 17.3 195 365-574 82-298 (608)
60 2v9p_A Replication protein E1; 100.0 1.9E-38 6.6E-43 350.9 -14.5 240 291-601 36-277 (305)
61 3bk7_A ABC transporter ATP-bin 100.0 1.5E-34 5.1E-39 351.3 14.7 199 360-586 357-563 (607)
62 1yqt_A RNAse L inhibitor; ATP- 100.0 1.2E-34 4.3E-39 348.9 13.2 199 360-586 287-493 (538)
63 3ozx_A RNAse L inhibitor; ATP 100.0 5.1E-34 1.7E-38 342.2 15.9 201 359-586 268-477 (538)
64 3nh6_A ATP-binding cassette SU 100.0 3.1E-34 1.1E-38 318.8 10.6 169 961-1133 14-182 (306)
65 2iw3_A Elongation factor 3A; a 100.0 3.3E-33 1.1E-37 348.9 16.7 196 360-580 671-981 (986)
66 3j16_B RLI1P; ribosome recycli 100.0 6.4E-33 2.2E-37 336.0 13.5 198 364-587 350-560 (608)
67 3ux8_A Excinuclease ABC, A sub 100.0 2.4E-31 8.3E-36 331.4 14.8 200 377-587 336-641 (670)
68 3pih_A Uvrabc system protein A 100.0 6.1E-30 2.1E-34 320.0 18.4 207 378-595 599-910 (916)
69 2vf7_A UVRA2, excinuclease ABC 100.0 1.9E-28 6.5E-33 304.1 18.8 213 359-587 501-828 (842)
70 2r6f_A Excinuclease ABC subuni 100.0 1.6E-28 5.5E-33 303.8 18.1 208 360-586 629-942 (972)
71 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.8E-32 9.7E-37 320.5 -15.6 180 380-586 129-338 (460)
72 4aby_A DNA repair protein RECN 100.0 2.1E-28 7E-33 289.1 14.3 201 378-579 50-381 (415)
73 2ygr_A Uvrabc system protein A 99.9 7.2E-28 2.5E-32 299.3 18.2 216 359-594 646-967 (993)
74 2ff7_A Alpha-hemolysin translo 99.9 9.8E-27 3.4E-31 252.4 13.6 132 1000-1133 6-137 (247)
75 1e69_A Chromosome segregation 99.9 6.9E-26 2.3E-30 257.1 16.5 195 380-575 16-301 (322)
76 2ghi_A Transport protein; mult 99.9 7.2E-26 2.5E-30 247.5 13.1 132 1000-1133 16-147 (260)
77 2ixe_A Antigen peptide transpo 99.9 1.1E-25 3.8E-30 247.4 14.1 134 999-1133 14-148 (271)
78 1mv5_A LMRA, multidrug resista 99.9 3.7E-26 1.3E-30 247.8 10.0 129 1002-1133 2-131 (243)
79 3b85_A Phosphate starvation-in 99.9 2.7E-27 9.2E-32 249.4 -3.8 157 377-574 14-171 (208)
80 3pih_A Uvrabc system protein A 99.9 8.4E-26 2.9E-30 282.7 8.1 166 405-586 384-560 (916)
81 2vf7_A UVRA2, excinuclease ABC 99.9 1.6E-24 5.3E-29 269.1 16.7 179 397-586 270-475 (842)
82 3gd7_A Fusion complex of cysti 99.9 1.9E-24 6.5E-29 247.6 13.7 132 998-1133 16-147 (390)
83 2r6f_A Excinuclease ABC subuni 99.9 2.6E-23 9E-28 257.4 20.9 151 413-586 432-600 (972)
84 4gp7_A Metallophosphoesterase; 99.9 4.6E-25 1.6E-29 226.3 2.9 149 381-567 1-168 (171)
85 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.7E-23 9.1E-28 239.0 17.1 83 495-577 275-364 (365)
86 1ye8_A Protein THEP1, hypothet 99.9 6.7E-25 2.3E-29 225.7 2.8 147 391-577 2-159 (178)
87 1z6g_A Guanylate kinase; struc 99.9 7.8E-27 2.7E-31 249.3 -14.5 165 378-572 12-193 (218)
88 2pt7_A CAG-ALFA; ATPase, prote 99.9 6.3E-27 2.2E-31 264.9 -16.6 206 294-575 75-292 (330)
89 2ygr_A Uvrabc system protein A 99.9 1.2E-21 4.1E-26 243.7 24.1 133 448-585 466-616 (993)
90 3tif_A Uncharacterized ABC tra 99.9 2.9E-23 9.8E-28 223.5 6.8 122 1002-1123 2-137 (235)
91 2pze_A Cystic fibrosis transme 99.9 2.2E-22 7.5E-27 215.9 12.3 117 1000-1132 5-121 (229)
92 3gfo_A Cobalt import ATP-bindi 99.9 1.1E-22 3.8E-27 223.1 7.3 128 1001-1130 7-143 (275)
93 2dpy_A FLII, flagellum-specifi 99.9 1.3E-24 4.5E-29 254.1 -8.9 195 359-586 130-344 (438)
94 1tq4_A IIGP1, interferon-induc 99.9 1.4E-24 5E-29 250.2 -8.4 166 377-567 37-247 (413)
95 2cbz_A Multidrug resistance-as 99.9 3.7E-22 1.3E-26 215.2 10.0 116 1001-1132 3-118 (237)
96 3tui_C Methionine import ATP-b 99.9 2.1E-22 7.1E-27 227.2 8.1 132 1000-1131 23-164 (366)
97 4g1u_C Hemin import ATP-bindin 99.9 4.8E-22 1.6E-26 217.6 10.2 126 1001-1129 11-140 (266)
98 1ji0_A ABC transporter; ATP bi 99.9 4E-22 1.4E-26 215.5 8.7 125 1001-1128 6-137 (240)
99 1vpl_A ABC transporter, ATP-bi 99.9 4E-22 1.4E-26 216.7 8.5 126 1000-1129 14-145 (256)
100 2olj_A Amino acid ABC transpor 99.9 3.9E-22 1.3E-26 217.6 8.3 127 1001-1130 24-159 (263)
101 2yz2_A Putative ABC transporte 99.9 7E-22 2.4E-26 216.9 10.3 127 1002-1131 3-139 (266)
102 2pcj_A ABC transporter, lipopr 99.8 4.6E-22 1.6E-26 212.7 7.3 126 1001-1129 4-139 (224)
103 1sgw_A Putative ABC transporte 99.8 5.5E-22 1.9E-26 209.4 7.9 119 1001-1129 10-132 (214)
104 2ihy_A ABC transporter, ATP-bi 99.8 6.3E-22 2.2E-26 218.0 8.6 126 1001-1129 21-160 (279)
105 2qi9_C Vitamin B12 import ATP- 99.8 1.4E-21 4.7E-26 211.6 10.6 121 1002-1130 5-126 (249)
106 1g6h_A High-affinity branched- 99.8 1.5E-21 5.2E-26 213.2 8.9 126 1001-1129 7-152 (257)
107 3b9q_A Chloroplast SRP recepto 99.8 7.8E-23 2.7E-27 228.0 -1.5 176 379-576 90-285 (302)
108 3fvq_A Fe(3+) IONS import ATP- 99.8 1.1E-21 3.9E-26 221.2 7.7 128 1001-1131 4-139 (359)
109 1b0u_A Histidine permease; ABC 99.8 1.8E-21 6E-26 213.0 8.7 127 1001-1130 6-153 (262)
110 3rlf_A Maltose/maltodextrin im 99.8 1.4E-21 4.9E-26 221.8 8.2 126 1001-1131 3-134 (381)
111 2o5v_A DNA replication and rep 99.8 1.9E-20 6.6E-25 212.6 16.8 81 499-584 265-354 (359)
112 2it1_A 362AA long hypothetical 99.8 2.9E-21 1E-25 219.0 8.2 126 1001-1131 3-134 (362)
113 1z47_A CYSA, putative ABC-tran 99.8 3.9E-21 1.3E-25 217.2 8.9 128 1000-1131 13-146 (355)
114 2yyz_A Sugar ABC transporter, 99.8 3.1E-21 1.1E-25 218.6 7.8 126 1001-1131 3-134 (359)
115 1v43_A Sugar-binding transport 99.8 3.8E-21 1.3E-25 219.0 7.8 126 1001-1131 11-142 (372)
116 3sop_A Neuronal-specific septi 99.8 1.7E-22 5.8E-27 221.9 -3.2 147 391-562 4-154 (270)
117 3d31_A Sulfate/molybdate ABC t 99.8 5.1E-21 1.7E-25 216.2 8.4 124 1002-1131 2-128 (348)
118 2onk_A Molybdate/tungstate ABC 99.8 4.6E-21 1.6E-25 206.5 7.1 121 1002-1130 2-126 (240)
119 3aez_A Pantothenate kinase; tr 99.8 2.5E-23 8.6E-28 233.0 -11.1 166 328-532 15-209 (312)
120 2v9p_A Replication protein E1; 99.8 1.8E-22 6.2E-27 223.2 -4.5 158 934-1132 38-197 (305)
121 2og2_A Putative signal recogni 99.8 6.2E-22 2.1E-26 224.3 -0.5 174 380-575 148-341 (359)
122 1znw_A Guanylate kinase, GMP k 99.8 1.1E-22 3.9E-27 215.6 -6.4 168 376-571 9-202 (207)
123 2d2e_A SUFC protein; ABC-ATPas 99.8 5.9E-21 2E-25 207.7 5.7 124 1002-1128 4-140 (250)
124 1oxx_K GLCV, glucose, ABC tran 99.8 3.7E-21 1.3E-25 218.3 4.3 128 1001-1131 3-141 (353)
125 2bbs_A Cystic fibrosis transme 99.8 2E-20 6.9E-25 206.8 9.7 113 999-1132 38-150 (290)
126 1g29_1 MALK, maltose transport 99.8 1.2E-20 4E-25 215.5 6.9 126 1001-1131 3-140 (372)
127 2pjz_A Hypothetical protein ST 99.8 2.7E-20 9.2E-25 203.0 5.8 122 1002-1129 2-127 (263)
128 2nq2_C Hypothetical ABC transp 99.8 5.5E-20 1.9E-24 199.9 6.6 115 1001-1130 4-128 (253)
129 2obl_A ESCN; ATPase, hydrolase 99.8 9.5E-21 3.2E-25 214.9 0.1 195 359-585 44-254 (347)
130 2f1r_A Molybdopterin-guanine d 99.8 1.4E-21 4.8E-26 198.7 -6.9 111 390-521 3-125 (171)
131 2zu0_C Probable ATP-dependent 99.8 4.7E-20 1.6E-24 202.3 4.5 118 1001-1121 20-153 (267)
132 2eyu_A Twitching motility prot 99.8 1E-19 3.4E-24 198.8 4.3 131 378-572 16-147 (261)
133 4ad8_A DNA repair protein RECN 99.8 1.7E-18 5.8E-23 209.0 13.9 77 498-574 395-474 (517)
134 2gza_A Type IV secretion syste 99.8 5.7E-23 1.9E-27 235.8 -24.2 201 924-1133 52-279 (361)
135 1tf7_A KAIC; homohexamer, hexa 99.8 1.5E-20 5.2E-25 227.4 -4.4 169 376-575 25-212 (525)
136 1cr0_A DNA primase/helicase; R 99.8 1E-18 3.5E-23 196.1 9.8 180 378-575 24-237 (296)
137 2i3b_A HCR-ntpase, human cance 99.8 1.2E-20 4E-25 195.6 -5.7 159 389-579 1-169 (189)
138 3qkt_A DNA double-strand break 99.8 1.2E-17 4E-22 190.6 18.4 76 496-571 245-327 (339)
139 2ewv_A Twitching motility prot 99.7 3.6E-21 1.2E-25 221.4 -11.5 174 378-560 127-353 (372)
140 2o8b_B DNA mismatch repair pro 99.7 3.2E-18 1.1E-22 218.6 13.3 172 359-583 749-939 (1022)
141 1tf7_A KAIC; homohexamer, hexa 99.7 1.3E-17 4.3E-22 201.8 12.8 152 383-574 275-444 (525)
142 1lvg_A Guanylate kinase, GMP k 99.7 1.5E-20 5.1E-25 197.5 -12.6 158 387-572 2-173 (198)
143 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 5E-17 1.7E-21 160.7 11.2 80 495-574 53-141 (148)
144 1w1w_A Structural maintenance 99.7 6.2E-17 2.1E-21 191.1 14.1 73 499-571 333-410 (430)
145 2gza_A Type IV secretion syste 99.7 8.6E-21 2.9E-25 217.7 -18.5 223 282-512 51-300 (361)
146 3thx_A DNA mismatch repair pro 99.7 1.3E-16 4.5E-21 201.0 16.6 168 359-585 630-812 (934)
147 2ehv_A Hypothetical protein PH 99.7 2.5E-18 8.4E-23 187.9 0.7 181 361-572 7-207 (251)
148 1pzn_A RAD51, DNA repair and r 99.7 5.4E-18 1.8E-22 193.4 3.3 166 378-585 119-314 (349)
149 4a74_A DNA repair and recombin 99.7 1.7E-17 5.7E-22 178.8 6.7 148 385-574 21-201 (231)
150 2jeo_A Uridine-cytidine kinase 99.7 1.3E-18 4.5E-23 189.3 -2.1 160 375-574 11-180 (245)
151 1lw7_A Transcriptional regulat 99.7 7.9E-19 2.7E-23 202.7 -4.3 177 378-586 157-355 (365)
152 1ewq_A DNA mismatch repair pro 99.7 1.9E-17 6.6E-22 205.1 7.2 158 358-577 548-715 (765)
153 1rj9_A FTSY, signal recognitio 99.7 2.8E-17 9.7E-22 183.1 6.2 151 388-560 101-260 (304)
154 3asz_A Uridine kinase; cytidin 99.7 5.3E-19 1.8E-23 188.0 -7.7 140 386-558 3-161 (211)
155 3szr_A Interferon-induced GTP- 99.7 1.3E-18 4.4E-23 212.8 -7.1 191 360-586 10-237 (608)
156 2qnr_A Septin-2, protein NEDD5 99.6 9E-18 3.1E-22 187.8 -3.1 163 364-560 2-169 (301)
157 3jvv_A Twitching mobility prot 99.6 1.1E-16 3.6E-21 182.1 4.3 147 364-573 92-246 (356)
158 1pui_A ENGB, probable GTP-bind 99.6 3.9E-17 1.3E-21 173.2 -0.9 169 361-546 4-197 (210)
159 2qag_C Septin-7; cell cycle, c 99.6 4.3E-17 1.5E-21 188.8 -2.0 166 359-561 10-180 (418)
160 2w0m_A SSO2452; RECA, SSPF, un 99.6 1.1E-15 3.9E-20 164.7 8.7 165 377-574 10-193 (235)
161 3kta_B Chromosome segregation 99.6 4.4E-15 1.5E-19 150.7 10.6 78 497-574 62-145 (173)
162 3thx_B DNA mismatch repair pro 99.6 5.3E-16 1.8E-20 194.9 4.6 144 375-567 659-805 (918)
163 1odf_A YGR205W, hypothetical 3 99.6 3.4E-17 1.2E-21 181.3 -6.7 129 388-534 30-169 (290)
164 1wb9_A DNA mismatch repair pro 99.5 2.1E-15 7.2E-20 188.1 5.6 152 376-579 595-751 (800)
165 1s96_A Guanylate kinase, GMP k 99.5 6.4E-16 2.2E-20 164.0 -0.5 144 383-586 10-160 (219)
166 2qag_B Septin-6, protein NEDD5 99.5 1.9E-15 6.5E-20 173.7 -1.3 179 360-556 16-217 (427)
167 1nlf_A Regulatory protein REPA 99.5 3.8E-14 1.3E-18 157.2 9.1 151 385-561 26-184 (279)
168 1nij_A Hypothetical protein YJ 99.5 1E-15 3.4E-20 172.8 -5.0 153 390-559 5-190 (318)
169 2cvh_A DNA repair and recombin 99.5 7.1E-14 2.4E-18 149.1 9.4 151 377-573 7-185 (220)
170 1zp6_A Hypothetical protein AT 99.5 1.7E-15 5.7E-20 158.1 -3.6 138 385-544 5-146 (191)
171 2f1r_A Molybdopterin-guanine d 99.5 7.1E-15 2.4E-19 149.3 0.6 84 1031-1133 3-98 (171)
172 3c8u_A Fructokinase; YP_612366 99.4 4.3E-16 1.5E-20 165.0 -10.4 118 386-527 19-140 (208)
173 1z6g_A Guanylate kinase; struc 99.4 3.2E-14 1.1E-18 151.5 2.6 93 1018-1119 11-115 (218)
174 2bdt_A BH3686; alpha-beta prot 99.4 8.6E-17 2.9E-21 167.7 -18.9 166 389-585 2-183 (189)
175 2qm8_A GTPase/ATPase; G protei 99.4 8.8E-16 3E-20 174.2 -12.5 177 362-545 31-258 (337)
176 1lvg_A Guanylate kinase, GMP k 99.4 2.3E-14 8E-19 150.2 -1.6 83 1027-1119 1-96 (198)
177 1n0w_A DNA repair protein RAD5 99.4 6.9E-13 2.3E-17 143.8 9.8 146 385-573 20-209 (243)
178 2yhs_A FTSY, cell division pro 99.4 4.1E-14 1.4E-18 164.3 -0.8 154 379-556 283-447 (503)
179 3aez_A Pantothenate kinase; tr 99.3 2.7E-14 9.1E-19 159.8 -3.6 100 998-1119 40-166 (312)
180 1htw_A HI0065; nucleotide-bind 99.3 9.1E-14 3.1E-18 139.2 0.1 88 1005-1101 11-99 (158)
181 1p9r_A General secretion pathw 99.3 3E-15 1E-19 173.5 -14.1 129 378-523 158-315 (418)
182 1lw7_A Transcriptional regulat 99.3 7.7E-14 2.6E-18 160.8 -2.4 109 1019-1130 157-275 (365)
183 2bbw_A Adenylate kinase 4, AK4 99.3 8.6E-14 2.9E-18 151.3 -2.6 146 388-546 26-197 (246)
184 1htw_A HI0065; nucleotide-bind 99.3 1.2E-13 4.1E-18 138.3 -1.7 87 364-459 11-97 (158)
185 2pt7_A CAG-ALFA; ATPase, prote 99.3 1.3E-13 4.6E-18 155.7 -2.8 103 1004-1118 151-261 (330)
186 2ewv_A Twitching motility prot 99.3 7.7E-13 2.6E-17 152.0 2.7 95 1019-1120 127-233 (372)
187 3e70_C DPA, signal recognition 99.3 2.4E-13 8.4E-18 152.7 -1.6 146 385-558 125-279 (328)
188 2eyu_A Twitching motility prot 99.3 1.2E-12 4.1E-17 142.7 3.9 104 1002-1118 6-120 (261)
189 2npi_A Protein CLP1; CLP1-PCF1 99.3 6E-14 2E-18 164.8 -7.1 104 1000-1122 117-229 (460)
190 2dpy_A FLII, flagellum-specifi 99.3 2.4E-13 8.2E-18 158.9 -2.3 98 1000-1100 130-237 (438)
191 3lda_A DNA repair protein RAD5 99.3 5.7E-12 2E-16 145.1 9.0 147 385-574 174-364 (400)
192 3auy_A DNA double-strand break 99.3 8.7E-12 3E-16 143.9 10.5 74 498-571 279-359 (371)
193 2rcn_A Probable GTPase ENGC; Y 99.2 1.6E-12 5.6E-17 146.5 3.5 121 378-514 205-328 (358)
194 2oap_1 GSPE-2, type II secreti 99.2 3.4E-14 1.2E-18 169.1 -11.0 174 377-565 248-458 (511)
195 1sxj_E Activator 1 40 kDa subu 99.2 8.3E-12 2.8E-16 143.5 7.6 138 391-561 38-177 (354)
196 2x8a_A Nuclear valosin-contain 99.2 3.7E-14 1.3E-18 156.3 -11.7 143 377-542 34-190 (274)
197 3sop_A Neuronal-specific septi 99.2 3.1E-12 1.1E-16 140.2 3.1 82 1032-1116 4-88 (270)
198 2kjq_A DNAA-related protein; s 99.2 1.9E-11 6.7E-16 121.3 8.2 91 378-557 30-124 (149)
199 3b9q_A Chloroplast SRP recepto 99.2 4.5E-12 1.6E-16 141.0 2.6 81 1021-1101 91-179 (302)
200 3ec2_A DNA replication protein 99.2 7.9E-12 2.7E-16 128.8 4.0 111 383-559 32-144 (180)
201 1tq4_A IIGP1, interferon-induc 99.2 2.6E-12 8.8E-17 148.1 -0.7 92 1018-1122 37-148 (413)
202 2yv5_A YJEQ protein; hydrolase 99.2 2.4E-12 8.4E-17 143.7 -1.2 115 384-512 160-300 (302)
203 2og2_A Putative signal recogni 99.1 1.5E-11 5.2E-16 139.2 2.4 81 1021-1101 148-236 (359)
204 1znw_A Guanylate kinase, GMP k 99.1 7.4E-12 2.5E-16 132.2 -0.5 74 1018-1098 10-85 (207)
205 2qag_B Septin-6, protein NEDD5 99.1 5.9E-12 2E-16 144.8 -1.6 89 1001-1102 16-107 (427)
206 2yhs_A FTSY, cell division pro 99.1 2E-11 6.8E-16 141.9 2.7 81 1021-1101 284-371 (503)
207 4e22_A Cytidylate kinase; P-lo 99.1 1.6E-11 5.4E-16 133.7 1.7 101 1017-1128 17-135 (252)
208 3b85_A Phosphate starvation-in 99.1 5.8E-12 2E-16 132.3 -1.8 62 1018-1087 14-75 (208)
209 2jeo_A Uridine-cytidine kinase 99.1 4.6E-11 1.6E-15 129.5 5.1 71 1016-1100 11-81 (245)
210 1sq5_A Pantothenate kinase; P- 99.1 6.8E-12 2.3E-16 140.8 -2.3 92 999-1100 35-151 (308)
211 2qm8_A GTPase/ATPase; G protei 99.1 2.3E-12 7.9E-17 146.1 -6.3 87 1002-1091 30-120 (337)
212 3lnc_A Guanylate kinase, GMP k 99.0 4.1E-13 1.4E-17 144.5 -13.7 39 377-415 15-54 (231)
213 1u0l_A Probable GTPase ENGC; p 99.0 6E-11 2.1E-15 132.5 3.3 104 1025-1129 164-290 (301)
214 1u0l_A Probable GTPase ENGC; p 99.0 5.9E-11 2E-15 132.6 1.4 103 384-487 164-290 (301)
215 1rj9_A FTSY, signal recognitio 99.0 2.3E-10 7.9E-15 127.3 5.8 73 1028-1100 100-179 (304)
216 1udx_A The GTP-binding protein 99.0 6.2E-11 2.1E-15 137.1 0.1 154 379-556 147-306 (416)
217 1sq5_A Pantothenate kinase; P- 99.0 2.7E-11 9.2E-16 135.9 -3.6 140 358-532 35-199 (308)
218 3asz_A Uridine kinase; cytidin 98.9 1.9E-10 6.3E-15 121.7 2.6 78 1027-1126 3-85 (211)
219 3szr_A Interferon-induced GTP- 98.9 2.9E-11 1E-15 147.8 -4.2 96 1001-1100 10-120 (608)
220 3tr0_A Guanylate kinase, GMP k 98.9 1E-09 3.5E-14 115.4 8.0 72 383-458 1-73 (205)
221 3ney_A 55 kDa erythrocyte memb 98.9 3.9E-10 1.3E-14 116.3 3.8 82 1026-1117 15-109 (197)
222 3euj_A Chromosome partition pr 98.9 3.3E-10 1.1E-14 132.5 3.4 80 1003-1088 8-95 (483)
223 1vma_A Cell division protein F 98.9 6.7E-10 2.3E-14 123.4 5.4 111 382-544 97-210 (306)
224 2yv5_A YJEQ protein; hydrolase 98.9 4.2E-10 1.4E-14 125.6 3.5 100 1026-1128 161-285 (302)
225 1s96_A Guanylate kinase, GMP k 98.9 1.6E-10 5.4E-15 122.5 -0.2 90 1024-1117 10-107 (219)
226 3euj_A Chromosome partition pr 98.9 7.8E-10 2.7E-14 129.3 4.6 53 378-431 19-71 (483)
227 1t9h_A YLOQ, probable GTPase E 98.9 1.7E-10 5.9E-15 127.7 -1.4 73 384-458 168-248 (307)
228 2px0_A Flagellar biosynthesis 98.9 2.8E-09 9.5E-14 118.2 8.0 138 387-577 103-246 (296)
229 1cke_A CK, MSSA, protein (cyti 98.8 6.5E-11 2.2E-15 126.7 -5.1 129 388-528 4-151 (227)
230 1ls1_A Signal recognition part 98.8 3.9E-09 1.3E-13 117.1 9.1 132 361-545 77-209 (295)
231 1iy2_A ATP-dependent metallopr 98.8 9E-12 3.1E-16 138.0 -12.4 136 362-526 51-194 (278)
232 1kgd_A CASK, peripheral plasma 98.8 9.4E-10 3.2E-14 113.1 3.3 82 1028-1117 3-95 (180)
233 1cke_A CK, MSSA, protein (cyti 98.8 4.1E-10 1.4E-14 120.5 0.2 92 1030-1129 5-114 (227)
234 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 7.3E-12 2.5E-16 143.3 -14.5 170 385-582 16-209 (392)
235 1in4_A RUVB, holliday junction 98.8 2.6E-12 8.7E-17 146.2 -18.3 154 364-546 22-193 (334)
236 3e70_C DPA, signal recognition 98.8 1.1E-09 3.8E-14 122.9 3.4 76 1026-1101 125-207 (328)
237 2obl_A ESCN; ATPase, hydrolase 98.8 7E-10 2.4E-14 125.6 1.3 66 1000-1068 44-109 (347)
238 2rcn_A Probable GTPase ENGC; Y 98.8 1.7E-10 5.8E-15 130.1 -3.7 98 1019-1125 205-309 (358)
239 1ixz_A ATP-dependent metallopr 98.8 1.5E-11 5.1E-16 134.3 -12.4 137 362-527 27-171 (254)
240 3tr0_A Guanylate kinase, GMP k 98.8 1.7E-09 5.9E-14 113.6 3.9 71 1024-1098 1-72 (205)
241 2qag_C Septin-7; cell cycle, c 98.8 9.6E-10 3.3E-14 127.2 1.5 91 1000-1103 10-101 (418)
242 4aby_A DNA repair protein RECN 98.8 1.4E-09 4.8E-14 127.7 2.7 81 1019-1100 50-169 (415)
243 4e22_A Cytidylate kinase; P-lo 98.8 7.2E-10 2.5E-14 120.5 0.1 97 378-484 19-133 (252)
244 1odf_A YGR205W, hypothetical 3 98.8 1.3E-09 4.4E-14 120.5 2.1 89 1029-1133 30-120 (290)
245 1p9r_A General secretion pathw 98.8 2.5E-10 8.7E-15 132.2 -3.9 103 1019-1123 158-288 (418)
246 1pui_A ENGB, probable GTP-bind 98.8 5.3E-10 1.8E-14 118.0 -1.5 84 1002-1091 4-110 (210)
247 1t9h_A YLOQ, probable GTPase E 98.8 1.1E-09 3.8E-14 121.2 1.0 97 1025-1123 168-288 (307)
248 1zp6_A Hypothetical protein AT 98.8 2E-09 6.9E-14 111.7 2.9 70 1026-1100 5-74 (191)
249 2zr9_A Protein RECA, recombina 98.8 3.5E-08 1.2E-12 112.0 13.2 143 385-580 57-237 (349)
250 3a00_A Guanylate kinase, GMP k 98.8 1E-09 3.6E-14 113.5 0.5 127 389-525 1-169 (186)
251 2dr3_A UPF0273 protein PH0284; 98.7 5.9E-09 2E-13 112.8 6.3 166 378-572 11-196 (247)
252 3lnc_A Guanylate kinase, GMP k 98.7 1.7E-09 5.8E-14 116.1 1.8 78 1019-1102 16-106 (231)
253 1oix_A RAS-related protein RAB 98.7 3.4E-10 1.2E-14 117.7 -5.7 141 391-544 31-188 (191)
254 2oap_1 GSPE-2, type II secreti 98.7 5.9E-09 2E-13 124.1 4.0 98 1018-1119 248-355 (511)
255 2ius_A DNA translocase FTSK; n 98.7 8.4E-10 2.9E-14 130.0 -3.5 164 381-559 159-343 (512)
256 1pzn_A RAD51, DNA repair and r 98.7 8.7E-09 3E-13 117.2 4.4 107 1005-1127 111-225 (349)
257 4a74_A DNA repair and recombin 98.7 9.9E-09 3.4E-13 109.8 4.6 72 1026-1103 21-99 (231)
258 1qhl_A Protein (cell division 98.6 7.5E-10 2.6E-14 117.3 -4.7 75 360-445 9-91 (227)
259 3c8u_A Fructokinase; YP_612366 98.6 1.1E-08 3.9E-13 107.7 4.3 54 1027-1099 19-72 (208)
260 4gp7_A Metallophosphoesterase; 98.6 9E-09 3.1E-13 104.8 3.2 30 1022-1051 1-30 (171)
261 2i3b_A HCR-ntpase, human cance 98.6 2.6E-09 9.1E-14 110.2 -0.9 54 1030-1087 1-54 (189)
262 1qhl_A Protein (cell division 98.6 8E-10 2.7E-14 117.1 -4.9 75 1001-1086 9-91 (227)
263 3jvv_A Twitching mobility prot 98.6 1.3E-08 4.4E-13 115.6 4.5 108 1005-1117 92-216 (356)
264 2r6a_A DNAB helicase, replicat 98.6 5.1E-08 1.7E-12 115.4 9.5 176 378-575 192-401 (454)
265 3a00_A Guanylate kinase, GMP k 98.6 9.1E-09 3.1E-13 106.3 2.6 78 1030-1117 1-91 (186)
266 1nij_A Hypothetical protein YJ 98.6 4E-09 1.4E-13 118.7 -0.9 73 1031-1103 5-104 (318)
267 3ney_A 55 kDa erythrocyte memb 98.6 5.7E-09 1.9E-13 107.7 -0.6 74 383-462 13-99 (197)
268 3k1j_A LON protease, ATP-depen 98.6 3.1E-09 1.1E-13 130.4 -3.2 156 377-544 48-227 (604)
269 2qnr_A Septin-2, protein NEDD5 98.5 1.2E-08 4.2E-13 113.6 1.2 85 1005-1102 2-88 (301)
270 2ehv_A Hypothetical protein PH 98.5 1.4E-08 4.7E-13 110.2 1.0 92 1001-1098 6-100 (251)
271 1e69_A Chromosome segregation 98.5 4.4E-08 1.5E-12 110.5 3.9 80 1021-1101 16-146 (322)
272 2j41_A Guanylate kinase; GMP, 98.5 3.5E-08 1.2E-12 103.7 2.7 85 1025-1117 1-96 (207)
273 2qt1_A Nicotinamide riboside k 98.5 2E-08 6.9E-13 105.6 0.2 55 1022-1102 13-67 (207)
274 1svm_A Large T antigen; AAA+ f 98.4 3.1E-09 1.1E-13 121.3 -7.3 135 377-528 157-312 (377)
275 1cr0_A DNA primase/helicase; R 98.4 3.8E-08 1.3E-12 109.7 0.8 68 1018-1088 23-91 (296)
276 2dy1_A Elongation factor G; tr 98.4 1.2E-07 4E-12 117.2 4.6 135 383-561 3-139 (665)
277 3nwj_A ATSK2; P loop, shikimat 98.4 2.9E-08 9.8E-13 107.0 -0.7 52 1001-1054 17-72 (250)
278 1kgd_A CASK, peripheral plasma 98.4 2.3E-08 7.9E-13 102.7 -1.6 70 388-461 4-84 (180)
279 2x8a_A Nuclear valosin-contain 98.4 4.8E-08 1.6E-12 107.3 0.8 80 1018-1101 34-115 (274)
280 1ye8_A Protein THEP1, hypothet 98.4 3E-08 1E-12 101.4 -0.9 51 1032-1087 2-52 (178)
281 3uie_A Adenylyl-sulfate kinase 98.4 2.6E-08 8.8E-13 104.2 -1.5 64 1018-1086 13-78 (200)
282 4eun_A Thermoresistant glucoki 98.4 1.5E-07 5.2E-12 98.3 4.4 73 1022-1099 21-94 (200)
283 3tau_A Guanylate kinase, GMP k 98.4 1E-07 3.4E-12 100.3 2.4 81 1028-1116 6-97 (208)
284 2f9l_A RAB11B, member RAS onco 98.3 2.3E-07 7.9E-12 96.7 4.7 35 508-544 130-164 (199)
285 2ce7_A Cell division protein F 98.3 1E-06 3.6E-11 103.5 10.7 113 378-561 40-167 (476)
286 2o8b_B DNA mismatch repair pro 98.3 4.1E-07 1.4E-11 116.5 7.6 74 1000-1098 749-835 (1022)
287 3ice_A Transcription terminati 98.3 7.6E-08 2.6E-12 107.4 0.3 56 998-1055 130-199 (422)
288 4eun_A Thermoresistant glucoki 98.3 1.7E-07 5.8E-12 97.9 2.2 62 383-449 23-84 (200)
289 3vaa_A Shikimate kinase, SK; s 98.3 2.7E-07 9.3E-12 96.3 3.5 45 1010-1054 5-49 (199)
290 2qt1_A Nicotinamide riboside k 98.3 1.5E-07 5.2E-12 98.8 1.3 53 382-460 14-66 (207)
291 1zu4_A FTSY; GTPase, signal re 98.3 2.3E-07 7.8E-12 103.9 2.4 81 1019-1099 94-185 (320)
292 3kta_A Chromosome segregation 98.2 8.7E-08 3E-12 98.5 -1.3 66 380-446 18-89 (182)
293 3uie_A Adenylyl-sulfate kinase 98.2 6.4E-08 2.2E-12 101.2 -2.7 60 365-428 4-65 (200)
294 3nwj_A ATSK2; P loop, shikimat 98.2 1.3E-07 4.4E-12 101.9 -0.4 52 360-413 17-72 (250)
295 2bdt_A BH3686; alpha-beta prot 98.2 2.7E-07 9.3E-12 95.3 2.0 61 1030-1099 2-63 (189)
296 2dhr_A FTSH; AAA+ protein, hex 98.2 3E-08 1E-12 117.2 -6.1 127 377-529 54-188 (499)
297 1ewq_A DNA mismatch repair pro 98.2 4.3E-07 1.5E-11 112.8 3.3 84 999-1101 548-635 (765)
298 2vp4_A Deoxynucleoside kinase; 98.2 1.6E-07 5.3E-12 100.6 -0.7 64 1024-1091 14-87 (230)
299 2dy1_A Elongation factor G; tr 98.2 2.7E-07 9.2E-12 113.9 1.3 105 1024-1130 3-110 (665)
300 2bbw_A Adenylate kinase 4, AK4 98.2 1.7E-07 5.9E-12 101.4 -1.0 68 1029-1100 26-97 (246)
301 1zu4_A FTSY; GTPase, signal re 98.2 5.7E-07 2E-11 100.6 3.1 68 379-446 95-172 (320)
302 2qtf_A Protein HFLX, GTP-bindi 98.2 1.4E-06 4.9E-11 99.3 6.1 142 391-545 181-351 (364)
303 1n0w_A DNA repair protein RAD5 98.1 1.1E-06 3.7E-11 94.6 4.7 80 1026-1114 20-107 (243)
304 3cr8_A Sulfate adenylyltranfer 98.1 1.7E-07 5.7E-12 112.3 -1.9 71 384-459 364-446 (552)
305 3tau_A Guanylate kinase, GMP k 98.1 2.1E-07 7.2E-12 97.9 -0.9 70 387-460 6-86 (208)
306 2j41_A Guanylate kinase; GMP, 98.1 9.4E-07 3.2E-11 92.6 3.7 61 384-447 1-61 (207)
307 3t34_A Dynamin-related protein 98.1 1.4E-06 4.7E-11 99.9 5.3 45 377-424 25-71 (360)
308 3cr8_A Sulfate adenylyltranfer 98.1 2.2E-07 7.7E-12 111.2 -1.5 90 1025-1119 364-468 (552)
309 3hr8_A Protein RECA; alpha and 98.1 1.4E-05 4.7E-10 90.2 13.1 60 385-447 57-117 (356)
310 3kta_A Chromosome segregation 98.1 4.8E-07 1.7E-11 92.8 1.0 99 1021-1121 18-136 (182)
311 1in4_A RUVB, holliday junction 98.1 1.9E-08 6.4E-13 114.2 -10.9 94 1002-1099 19-123 (334)
312 3vaa_A Shikimate kinase, SK; s 98.1 1.2E-06 4.1E-11 91.4 3.6 45 369-413 5-49 (199)
313 3lda_A DNA repair protein RAD5 98.1 1.7E-06 5.7E-11 99.6 4.3 71 1026-1103 174-252 (400)
314 1svm_A Large T antigen; AAA+ f 98.1 1.2E-06 4.2E-11 99.8 2.9 65 1018-1090 157-221 (377)
315 1iy2_A ATP-dependent metallopr 98.0 6.1E-07 2.1E-11 98.9 -0.4 89 1003-1098 51-141 (278)
316 1ixz_A ATP-dependent metallopr 98.0 6.7E-07 2.3E-11 97.2 -0.5 90 1002-1098 26-117 (254)
317 1jjv_A Dephospho-COA kinase; P 98.0 2.3E-06 7.8E-11 89.7 3.2 70 500-572 60-132 (206)
318 2w0m_A SSO2452; RECA, SSPF, un 98.0 1.4E-06 4.7E-11 93.1 0.7 67 1018-1087 10-80 (235)
319 2vp4_A Deoxynucleoside kinase; 97.9 5.2E-07 1.8E-11 96.4 -3.2 64 383-450 14-87 (230)
320 1knq_A Gluconate kinase; ALFA/ 97.9 4.5E-06 1.5E-10 84.9 3.8 56 1028-1089 6-62 (175)
321 2xau_A PRE-mRNA-splicing facto 97.9 1.2E-05 4.1E-10 100.9 8.3 66 498-563 189-257 (773)
322 3ice_A Transcription terminati 97.9 1.6E-06 5.5E-11 96.8 0.1 58 355-414 128-199 (422)
323 2z43_A DNA repair and recombin 97.9 1.3E-05 4.4E-10 90.2 7.5 29 385-413 103-131 (324)
324 2e87_A Hypothetical protein PH 97.8 2.1E-05 7E-10 89.9 8.2 60 498-558 230-292 (357)
325 2kjq_A DNAA-related protein; s 97.8 1.3E-05 4.5E-10 79.1 5.4 47 1019-1071 30-78 (149)
326 4a1f_A DNAB helicase, replicat 97.8 6.7E-05 2.3E-09 84.0 11.7 102 378-530 35-140 (338)
327 1knq_A Gluconate kinase; ALFA/ 97.8 5.2E-06 1.8E-10 84.4 2.2 53 387-445 6-59 (175)
328 1ls1_A Signal recognition part 97.8 3.6E-06 1.2E-10 93.2 0.5 63 1002-1071 77-139 (295)
329 1rz3_A Hypothetical protein rb 97.8 6.6E-06 2.3E-10 85.8 2.5 47 1026-1072 18-64 (201)
330 2ffh_A Protein (FFH); SRP54, s 97.8 4.2E-05 1.4E-09 88.3 9.2 160 364-556 80-246 (425)
331 3kl4_A SRP54, signal recogniti 97.7 5.7E-05 2E-09 87.3 8.1 40 388-427 96-135 (433)
332 1rz3_A Hypothetical protein rb 97.7 1.4E-05 4.9E-10 83.2 2.6 47 385-431 18-64 (201)
333 2pez_A Bifunctional 3'-phospho 97.6 9.3E-06 3.2E-10 82.9 1.1 54 1028-1086 3-58 (179)
334 3tqc_A Pantothenate kinase; bi 97.6 1.3E-05 4.4E-10 89.2 2.2 56 1018-1073 74-137 (321)
335 3tqc_A Pantothenate kinase; bi 97.6 1.5E-05 5E-10 88.8 1.9 44 377-420 74-125 (321)
336 1udx_A The GTP-binding protein 97.6 1.5E-05 5.2E-10 92.0 1.9 34 1020-1053 147-180 (416)
337 2cvh_A DNA repair and recombin 97.6 3.2E-05 1.1E-09 81.5 4.2 57 1018-1078 7-64 (220)
338 1vma_A Cell division protein F 97.6 2E-05 6.7E-10 87.4 2.6 48 1023-1070 97-144 (306)
339 2z4s_A Chromosomal replication 97.6 3.9E-05 1.3E-09 90.0 5.2 67 516-582 193-264 (440)
340 1fnn_A CDC6P, cell division co 97.6 0.0003 1E-08 81.0 12.2 44 516-560 124-171 (389)
341 1sxj_E Activator 1 40 kDa subu 97.5 3.2E-05 1.1E-09 88.2 3.6 56 1032-1089 38-94 (354)
342 1oix_A RAS-related protein RAB 97.5 1.5E-05 5E-10 82.4 0.6 37 1032-1068 31-78 (191)
343 1wb9_A DNA mismatch repair pro 97.5 2.8E-05 9.5E-10 97.2 2.8 85 1000-1101 576-666 (800)
344 3r20_A Cytidylate kinase; stru 97.5 1E-05 3.6E-10 85.6 -1.2 70 1030-1099 9-96 (233)
345 2qor_A Guanylate kinase; phosp 97.5 2.2E-05 7.7E-10 81.9 1.1 66 1026-1094 8-84 (204)
346 2dhr_A FTSH; AAA+ protein, hex 97.5 5.8E-05 2E-09 89.2 4.6 89 1003-1098 42-132 (499)
347 1v5w_A DMC1, meiotic recombina 97.4 0.00014 4.6E-09 82.5 7.2 28 385-412 118-145 (343)
348 2f9l_A RAB11B, member RAS onco 97.4 5.1E-05 1.8E-09 78.7 2.7 55 1032-1086 7-77 (199)
349 1sxj_C Activator 1 40 kDa subu 97.4 5.3E-05 1.8E-09 85.9 2.5 42 377-418 32-75 (340)
350 1ni3_A YCHF GTPase, YCHF GTP-b 97.4 8.6E-05 2.9E-09 84.9 4.0 41 1026-1066 16-68 (392)
351 2pez_A Bifunctional 3'-phospho 97.3 2.9E-05 1E-09 79.1 0.0 40 387-427 3-44 (179)
352 3thx_A DNA mismatch repair pro 97.3 0.0001 3.4E-09 93.4 4.8 61 1000-1060 630-700 (934)
353 2px0_A Flagellar biosynthesis 97.3 9.3E-05 3.2E-09 81.8 3.7 45 1028-1072 103-148 (296)
354 3m6a_A ATP-dependent protease 97.3 6.3E-05 2.1E-09 90.7 2.2 48 377-425 97-144 (543)
355 3ec2_A DNA replication protein 97.3 4.6E-05 1.6E-09 77.8 0.8 36 1024-1059 32-67 (180)
356 1f6b_A SAR1; gtpases, N-termin 97.3 5.2E-05 1.8E-09 78.6 1.1 58 1008-1068 6-71 (198)
357 1ypw_A Transitional endoplasmi 97.3 5.9E-05 2E-09 95.2 1.7 64 1022-1087 503-566 (806)
358 3b9p_A CG5977-PA, isoform A; A 97.3 0.0014 4.9E-08 72.4 12.8 70 501-570 97-186 (297)
359 3m6a_A ATP-dependent protease 97.3 6.3E-05 2.1E-09 90.7 1.4 80 1004-1087 86-165 (543)
360 2p67_A LAO/AO transport system 97.2 5.2E-05 1.8E-09 85.8 0.7 53 1018-1070 44-96 (341)
361 1m7g_A Adenylylsulfate kinase; 97.2 5.8E-05 2E-09 79.2 0.9 45 1025-1069 20-66 (211)
362 2jaq_A Deoxyguanosine kinase; 97.2 2.8E-05 9.4E-10 81.0 -1.7 69 1032-1100 2-86 (205)
363 1mky_A Probable GTP-binding pr 97.2 0.00011 3.7E-09 86.4 3.2 61 1031-1091 181-253 (439)
364 3bh0_A DNAB-like replicative h 97.2 0.00036 1.2E-08 78.0 7.3 103 378-529 57-163 (315)
365 3k1j_A LON protease, ATP-depen 97.2 7.6E-05 2.6E-09 91.4 1.8 65 1018-1087 48-113 (604)
366 3lxx_A GTPase IMAP family memb 97.2 0.002 6.9E-08 68.7 12.4 28 391-418 31-58 (239)
367 4eaq_A DTMP kinase, thymidylat 97.2 0.0002 6.8E-09 76.1 4.2 44 1020-1064 13-59 (229)
368 2p67_A LAO/AO transport system 97.2 7.1E-05 2.4E-09 84.8 0.7 51 377-427 44-94 (341)
369 4ad8_A DNA repair protein RECN 97.2 0.00011 3.6E-09 88.3 2.2 72 1019-1091 50-160 (517)
370 4eaq_A DTMP kinase, thymidylat 97.2 0.00017 6E-09 76.5 3.6 43 379-422 13-58 (229)
371 3t34_A Dynamin-related protein 97.1 7.3E-05 2.5E-09 85.4 0.5 42 1018-1062 25-68 (360)
372 1lv7_A FTSH; alpha/beta domain 97.1 0.0021 7E-08 69.5 11.8 44 378-425 36-79 (257)
373 1kag_A SKI, shikimate kinase I 97.1 0.0002 6.7E-09 72.3 3.4 35 1029-1067 3-37 (173)
374 2www_A Methylmalonic aciduria 97.1 0.00015 5.2E-09 82.2 2.8 43 1028-1070 72-114 (349)
375 3llm_A ATP-dependent RNA helic 97.1 0.00063 2.2E-08 72.5 7.5 137 386-554 73-215 (235)
376 1uf9_A TT1252 protein; P-loop, 97.1 6.8E-05 2.3E-09 77.9 -0.2 74 1031-1116 9-86 (203)
377 2qby_A CDC6 homolog 1, cell di 97.1 0.00022 7.4E-09 82.0 4.1 30 387-416 43-72 (386)
378 1mky_A Probable GTP-binding pr 97.1 0.00028 9.5E-09 82.9 4.7 68 391-458 182-262 (439)
379 3thx_B DNA mismatch repair pro 97.1 0.00016 5.3E-09 91.3 2.5 52 1000-1053 639-696 (918)
380 1m7g_A Adenylylsulfate kinase; 97.1 0.00012 4.1E-09 76.7 1.1 43 384-426 20-64 (211)
381 1l8q_A Chromosomal replication 97.1 0.0012 4.2E-08 74.0 9.5 29 388-416 36-64 (324)
382 1ega_A Protein (GTP-binding pr 97.0 0.00027 9.3E-09 78.4 3.7 141 388-561 7-162 (301)
383 2ffh_A Protein (FFH); SRP54, s 97.0 0.00027 9.2E-09 81.6 3.7 64 1002-1072 77-140 (425)
384 1kag_A SKI, shikimate kinase I 97.0 0.00029 1E-08 71.0 3.5 33 388-424 3-35 (173)
385 1m2o_B GTP-binding protein SAR 97.0 0.0003 1E-08 72.3 3.6 49 1019-1068 13-69 (190)
386 1u94_A RECA protein, recombina 97.0 0.0051 1.7E-07 69.5 13.9 35 378-413 50-87 (356)
387 2w58_A DNAI, primosome compone 97.0 0.001 3.6E-08 68.9 7.6 27 390-416 55-81 (202)
388 1w1w_A Structural maintenance 97.0 0.00038 1.3E-08 81.5 4.4 50 1001-1059 6-55 (430)
389 2gj8_A MNME, tRNA modification 97.0 0.00034 1.2E-08 70.6 3.4 41 1028-1068 2-54 (172)
390 2www_A Methylmalonic aciduria 97.0 0.00023 7.7E-09 80.8 2.3 42 387-428 72-113 (349)
391 2qor_A Guanylate kinase; phosp 96.9 0.00022 7.5E-09 74.3 1.9 30 385-414 8-37 (204)
392 2o5v_A DNA replication and rep 96.9 0.00053 1.8E-08 77.6 4.8 33 1019-1052 16-48 (359)
393 1ex7_A Guanylate kinase; subst 96.9 0.0004 1.4E-08 70.9 3.4 75 1033-1117 4-91 (186)
394 2dr3_A UPF0273 protein PH0284; 96.9 0.00018 6.2E-09 77.1 0.4 68 1019-1087 11-80 (247)
395 1f6b_A SAR1; gtpases, N-termin 96.8 0.0003 1E-08 72.8 1.9 42 367-411 6-47 (198)
396 1j8m_F SRP54, signal recogniti 96.8 0.0003 1E-08 77.6 1.9 64 1002-1071 75-139 (297)
397 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00065 2.2E-08 66.8 4.0 31 380-411 15-45 (149)
398 3hr8_A Protein RECA; alpha and 96.8 0.00073 2.5E-08 76.1 4.9 63 1026-1091 57-120 (356)
399 1nlf_A Regulatory protein REPA 96.8 0.00049 1.7E-08 75.5 3.4 30 1026-1055 26-55 (279)
400 3r20_A Cytidylate kinase; stru 96.8 0.00012 4.2E-09 77.4 -1.9 55 389-443 9-75 (233)
401 1sxj_C Activator 1 40 kDa subu 96.7 0.00014 4.9E-09 82.3 -1.7 70 1018-1087 32-104 (340)
402 3h4m_A Proteasome-activating n 96.7 0.0042 1.4E-07 68.1 10.3 28 386-413 48-75 (285)
403 3cf0_A Transitional endoplasmi 96.7 0.0029 1E-07 70.1 9.0 31 384-414 44-74 (301)
404 2qtf_A Protein HFLX, GTP-bindi 96.7 0.00054 1.8E-08 78.0 2.7 37 1032-1068 181-228 (364)
405 1m2o_B GTP-binding protein SAR 96.7 0.0011 3.6E-08 68.1 4.7 33 378-411 13-45 (190)
406 2yvu_A Probable adenylyl-sulfa 96.7 0.00035 1.2E-08 71.5 0.9 43 1026-1068 9-52 (186)
407 2ius_A DNA translocase FTSK; n 96.7 0.00088 3E-08 78.9 4.4 56 1022-1077 159-216 (512)
408 3bos_A Putative DNA replicatio 96.7 0.0011 3.8E-08 70.4 4.8 28 388-415 51-78 (242)
409 4fcw_A Chaperone protein CLPB; 96.7 0.0022 7.4E-08 71.3 7.3 31 390-420 48-78 (311)
410 3qf7_A RAD50; ABC-ATPase, ATPa 96.6 0.0007 2.4E-08 77.2 3.1 31 1020-1051 14-44 (365)
411 1j8m_F SRP54, signal recogniti 96.6 0.00041 1.4E-08 76.6 1.0 49 380-429 89-138 (297)
412 1y63_A LMAJ004144AAA protein; 96.6 0.00092 3.1E-08 68.3 3.4 32 1022-1053 2-33 (184)
413 1sxj_D Activator 1 41 kDa subu 96.6 0.0007 2.4E-08 76.8 2.8 43 517-560 133-175 (353)
414 2p5t_B PEZT; postsegregational 96.6 0.00087 3E-08 72.3 3.3 43 1026-1070 28-70 (253)
415 2gj8_A MNME, tRNA modification 96.6 0.0013 4.6E-08 66.1 4.4 27 387-413 2-28 (172)
416 1lv7_A FTSH; alpha/beta domain 96.6 0.00086 2.9E-08 72.5 3.0 64 1019-1086 36-99 (257)
417 1ypw_A Transitional endoplasmi 96.5 0.00051 1.7E-08 86.6 1.2 62 1025-1088 233-294 (806)
418 2dby_A GTP-binding protein; GD 96.5 0.00092 3.1E-08 75.9 3.0 59 1032-1122 3-61 (368)
419 2qag_A Septin-2, protein NEDD5 96.5 0.00026 9E-09 80.6 -1.7 54 998-1060 14-67 (361)
420 3t61_A Gluconokinase; PSI-biol 96.4 0.0012 4.1E-08 68.5 3.0 36 1030-1069 18-53 (202)
421 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0013 4.3E-08 75.0 3.4 41 1026-1066 18-69 (396)
422 1y63_A LMAJ004144AAA protein; 96.4 0.0014 5E-08 66.8 3.4 32 381-412 2-33 (184)
423 2yvu_A Probable adenylyl-sulfa 96.4 0.0011 3.9E-08 67.6 2.5 36 385-420 9-44 (186)
424 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0017 6E-08 63.7 3.7 34 1021-1055 15-49 (149)
425 1njg_A DNA polymerase III subu 96.4 0.002 6.8E-08 68.3 4.5 45 516-561 125-169 (250)
426 1np6_A Molybdopterin-guanine d 96.4 0.0017 5.7E-08 65.5 3.5 38 1031-1068 7-47 (174)
427 3n70_A Transport activator; si 96.3 0.011 3.9E-07 57.4 8.8 29 387-415 22-50 (145)
428 1jjv_A Dephospho-COA kinase; P 96.2 0.0017 5.6E-08 67.6 2.8 30 1032-1066 4-33 (206)
429 2wji_A Ferrous iron transport 96.2 0.0026 8.9E-08 63.4 4.0 23 1031-1053 4-26 (165)
430 1np6_A Molybdopterin-guanine d 96.2 0.0023 8E-08 64.4 3.5 38 389-426 6-46 (174)
431 2qag_A Septin-2, protein NEDD5 96.2 0.00041 1.4E-08 79.0 -2.4 58 358-424 15-72 (361)
432 2p5t_B PEZT; postsegregational 96.2 0.0016 5.6E-08 70.1 2.4 42 385-428 28-69 (253)
433 4dcu_A GTP-binding protein ENG 96.1 0.007 2.4E-07 71.2 7.7 57 502-561 87-144 (456)
434 3t61_A Gluconokinase; PSI-biol 96.1 0.0017 6E-08 67.2 2.2 33 389-425 18-50 (202)
435 2ohf_A Protein OLA1, GTP-bindi 96.1 0.0027 9.1E-08 72.4 3.8 41 385-425 18-69 (396)
436 2wjg_A FEOB, ferrous iron tran 96.1 0.0022 7.4E-08 65.3 2.7 37 1031-1067 8-55 (188)
437 2jaq_A Deoxyguanosine kinase; 96.1 0.00048 1.7E-08 71.4 -2.3 23 391-413 2-24 (205)
438 3qks_A DNA double-strand break 96.1 0.0033 1.1E-07 65.2 4.0 30 380-410 15-44 (203)
439 2wji_A Ferrous iron transport 96.0 0.0053 1.8E-07 61.1 5.0 23 391-413 5-27 (165)
440 3dm5_A SRP54, signal recogniti 96.0 0.045 1.5E-06 63.2 13.1 29 388-416 99-127 (443)
441 2i1q_A DNA repair and recombin 95.9 0.0053 1.8E-07 68.7 5.1 28 385-412 94-121 (322)
442 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.043 1.5E-06 58.9 12.2 26 388-413 38-63 (262)
443 2q6t_A DNAB replication FORK h 95.9 0.012 4.1E-07 68.9 8.3 37 378-414 189-225 (444)
444 3uk6_A RUVB-like 2; hexameric 95.9 0.015 5E-07 66.3 8.7 39 387-425 68-106 (368)
445 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0016 5.6E-08 72.6 0.6 37 1018-1054 10-48 (359)
446 2wjg_A FEOB, ferrous iron tran 95.9 0.0045 1.6E-07 62.8 3.9 22 391-412 9-30 (188)
447 1ko7_A HPR kinase/phosphatase; 95.9 0.0038 1.3E-07 68.6 3.4 46 1019-1065 134-183 (314)
448 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0018 6E-08 72.3 0.7 38 377-414 10-49 (359)
449 2zej_A Dardarin, leucine-rich 95.8 0.0039 1.3E-07 63.3 3.1 23 1032-1054 4-26 (184)
450 3d8b_A Fidgetin-like protein 1 95.8 0.031 1.1E-06 63.4 11.0 27 387-413 115-141 (357)
451 2if2_A Dephospho-COA kinase; a 95.8 0.0047 1.6E-07 63.9 3.6 22 1032-1053 3-24 (204)
452 3cm0_A Adenylate kinase; ATP-b 95.8 0.005 1.7E-07 62.6 3.7 27 1028-1054 2-28 (186)
453 3ihw_A Centg3; RAS, centaurin, 95.7 0.006 2.1E-07 62.0 4.2 36 1032-1067 22-66 (184)
454 4ag6_A VIRB4 ATPase, type IV s 95.7 0.005 1.7E-07 71.0 4.0 70 1007-1081 11-83 (392)
455 2z43_A DNA repair and recombin 95.6 0.0072 2.5E-07 67.6 4.7 69 1026-1103 103-181 (324)
456 1qhx_A CPT, protein (chloramph 95.6 0.0061 2.1E-07 61.5 3.8 26 1030-1055 3-28 (178)
457 2if2_A Dephospho-COA kinase; a 95.6 0.0053 1.8E-07 63.5 3.2 21 391-411 3-23 (204)
458 1jal_A YCHF protein; nucleotid 95.6 0.0087 3E-07 67.4 5.1 36 1030-1065 2-48 (363)
459 1gtv_A TMK, thymidylate kinase 95.6 0.002 6.7E-08 67.4 -0.2 26 1032-1057 2-27 (214)
460 2vhj_A Ntpase P4, P4; non- hyd 95.5 0.018 6.3E-07 63.2 7.3 28 385-412 119-146 (331)
461 1xp8_A RECA protein, recombina 95.5 0.055 1.9E-06 61.2 11.4 29 385-413 70-98 (366)
462 1qhx_A CPT, protein (chloramph 95.5 0.0078 2.7E-07 60.6 4.0 27 388-414 2-28 (178)
463 3cm0_A Adenylate kinase; ATP-b 95.5 0.0054 1.9E-07 62.3 2.7 27 387-413 2-28 (186)
464 2zej_A Dardarin, leucine-rich 95.5 0.0062 2.1E-07 61.8 3.1 25 391-415 4-28 (184)
465 3kb2_A SPBC2 prophage-derived 95.5 0.0066 2.3E-07 60.7 3.3 24 1032-1055 3-26 (173)
466 3trf_A Shikimate kinase, SK; a 95.5 0.0072 2.5E-07 61.4 3.6 26 1029-1054 4-29 (185)
467 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.11 3.9E-06 57.7 13.6 27 387-413 43-69 (322)
468 3syl_A Protein CBBX; photosynt 95.4 0.1 3.5E-06 57.5 13.1 26 388-413 66-91 (309)
469 2v1u_A Cell division control p 95.4 0.0088 3E-07 68.4 4.5 28 387-414 42-69 (387)
470 1ega_A Protein (GTP-binding pr 95.4 0.005 1.7E-07 68.2 2.2 25 1029-1053 7-31 (301)
471 2zr9_A Protein RECA, recombina 95.4 0.011 3.9E-07 66.6 5.1 62 1026-1090 57-119 (349)
472 1xjc_A MOBB protein homolog; s 95.4 0.0068 2.3E-07 60.5 2.9 36 1031-1066 5-43 (169)
473 4ag6_A VIRB4 ATPase, type IV s 95.3 0.0077 2.6E-07 69.4 3.7 36 388-423 34-69 (392)
474 2chg_A Replication factor C sm 95.3 0.032 1.1E-06 57.8 8.1 43 516-559 101-143 (226)
475 1fzq_A ADP-ribosylation factor 95.3 0.0068 2.3E-07 61.3 2.8 38 1030-1067 16-61 (181)
476 3kb2_A SPBC2 prophage-derived 95.3 0.0082 2.8E-07 60.0 3.3 23 391-413 3-25 (173)
477 3qks_A DNA double-strand break 95.3 0.0094 3.2E-07 61.7 3.7 30 1021-1051 15-44 (203)
478 1gtv_A TMK, thymidylate kinase 95.3 0.0036 1.2E-07 65.3 0.5 29 391-419 2-30 (214)
479 1kht_A Adenylate kinase; phosp 95.2 0.0098 3.3E-07 60.6 3.6 27 1029-1055 2-28 (192)
480 1ex7_A Guanylate kinase; subst 95.2 0.0094 3.2E-07 60.6 3.3 44 392-437 4-60 (186)
481 3kl4_A SRP54, signal recogniti 95.2 0.006 2.1E-07 70.4 2.1 42 1029-1070 96-137 (433)
482 3ihw_A Centg3; RAS, centaurin, 95.2 0.017 5.9E-07 58.5 5.3 34 391-424 22-64 (184)
483 3cmw_A Protein RECA, recombina 95.2 0.072 2.5E-06 71.0 12.4 39 386-424 729-768 (1706)
484 1gvn_B Zeta; postsegregational 95.2 0.013 4.4E-07 64.3 4.6 38 1029-1068 32-69 (287)
485 2v54_A DTMP kinase, thymidylat 95.1 0.011 3.9E-07 60.9 3.9 26 1029-1054 3-28 (204)
486 1q3t_A Cytidylate kinase; nucl 95.1 0.011 3.6E-07 62.9 3.7 26 1027-1052 13-38 (236)
487 1gvn_B Zeta; postsegregational 95.1 0.012 4E-07 64.6 4.1 35 388-424 32-66 (287)
488 3lxx_A GTPase IMAP family memb 95.1 0.012 3.9E-07 62.7 3.9 28 1032-1059 31-58 (239)
489 2b8t_A Thymidine kinase; deoxy 95.1 0.019 6.7E-07 60.1 5.5 51 517-571 89-150 (223)
490 1vht_A Dephospho-COA kinase; s 95.1 0.013 4.3E-07 61.4 4.0 23 1030-1052 4-26 (218)
491 3t15_A Ribulose bisphosphate c 95.0 0.046 1.6E-06 60.1 8.5 25 389-413 36-60 (293)
492 1v5w_A DMC1, meiotic recombina 95.0 0.01 3.6E-07 66.9 3.3 69 1026-1103 118-196 (343)
493 3iij_A Coilin-interacting nucl 95.0 0.0086 2.9E-07 60.6 2.4 27 1028-1054 9-35 (180)
494 3bgw_A DNAB-like replicative h 95.0 0.035 1.2E-06 64.8 7.8 35 378-412 186-220 (444)
495 1q3t_A Cytidylate kinase; nucl 95.0 0.012 4E-07 62.6 3.6 28 386-413 13-40 (236)
496 3lw7_A Adenylate kinase relate 95.0 0.011 3.9E-07 59.0 3.2 19 1032-1050 3-21 (179)
497 1uf9_A TT1252 protein; P-loop, 95.0 0.01 3.6E-07 61.1 3.0 32 389-425 8-39 (203)
498 2rhm_A Putative kinase; P-loop 95.0 0.011 3.7E-07 60.4 3.1 27 1028-1054 3-29 (193)
499 2c95_A Adenylate kinase 1; tra 95.0 0.012 3.9E-07 60.4 3.3 27 1028-1054 7-33 (196)
500 2bwj_A Adenylate kinase 5; pho 94.9 0.0059 2E-07 62.7 1.0 30 1025-1054 7-36 (199)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-168 Score=1660.54 Aligned_cols=1115 Identities=32% Similarity=0.536 Sum_probs=959.4
Q ss_pred cccccchHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCC---------------CCChhhhhhh
Q 041277 14 TKTKNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVS---------------NVPIDVFTHN 78 (1133)
Q Consensus 14 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~---------------~~~~~~~~~~ 78 (1133)
++.++.++++||+|+.+++++++++|++++++.|+..|++++++|++++.+.... ......+...
T Consensus 55 ~~~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (1321)
T 4f4c_A 55 EVVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHD 134 (1321)
T ss_dssp CCSSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHH
T ss_pred cccCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHH
Confidence 3445678999999999999999999999999999999999999999998753210 0011122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHh
Q 041277 79 INKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISE 158 (1133)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~ 158 (1133)
+..+++++++++++.+++.+++.+++.+.++|+..++|.++|+|++++|++|||+ + ++|++++|+++|++.+++++++
T Consensus 135 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~-~-~~G~l~sr~~~D~~~i~~~~~~ 212 (1321)
T 4f4c_A 135 VMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT-N-HSGTLATKLFDNLERVKEGTGD 212 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH-T-CCTTHHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-C-ChHHHHHHHHHHHHHHHHHHHH
Confidence 5556677778888999999999999999999999999999999999999999996 6 9999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHc
Q 041277 159 KLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFV 238 (1133)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~ 238 (1133)
.++.++..++.++++++++|+++|++++++++++|+++++..++.++.++..++.++..+++++.++|.++|+++||+|+
T Consensus 213 ~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~ 292 (1321)
T 4f4c_A 213 KIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLN 292 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Q 041277 239 GESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAG 317 (1133)
Q Consensus 239 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~ 317 (1133)
+|+.+.++|.+..++.++...+.....++..+ ..++..+.+++++|+|++++..|.+|+|.+++++.++.....|+..+
T Consensus 293 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~ 372 (1321)
T 4f4c_A 293 GLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLA 372 (1321)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888 77888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcC
Q 041277 318 LPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGG 397 (1133)
Q Consensus 318 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~ 397 (1133)
.+.+..++++.+|++||+++++.+|+.+.....+..+.+.+|.|+|+||+|+||+++++++|+|+||+|++||++|||||
T Consensus 373 ~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~ 452 (1321)
T 4f4c_A 373 GPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGS 452 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEec
Confidence 99999999999999999999998876654333333344567899999999999987778899999999999999999999
Q ss_pred CCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhc
Q 041277 398 SGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASN 477 (1133)
Q Consensus 398 sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~ 477 (1133)
||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|+||||++||+|||.||.++.+++++++||+.++
T Consensus 453 sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~ 532 (1321)
T 4f4c_A 453 SGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMAN 532 (1321)
T ss_dssp SSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecC
Q 041277 478 AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHR 557 (1133)
Q Consensus 478 ~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~ 557 (1133)
+++|++.||+||||.|||+|.+||||||||||||||+++||+||||||||||||+++|+.++++|+++.+|+|+|+||||
T Consensus 533 l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHr 612 (1321)
T 4f4c_A 533 AEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612 (1321)
T ss_dssp CHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSC
T ss_pred chhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhcCCCCCC--------CCcccccccccccCCCCCCccc-
Q 041277 558 LSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDN--------NNATMHSLASKSSNMDMNSTSS- 628 (1133)
Q Consensus 558 ~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~- 628 (1133)
++++++||+|+||++|+|+|+|+|+||++ .++.|+++++.|...+..+ .+....................
T Consensus 613 ls~i~~aD~Iivl~~G~ive~Gth~eL~~-~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1321)
T 4f4c_A 613 LSTIRNADLIISCKNGQVVEVGDHRALMA-QQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMD 691 (1321)
T ss_dssp TTTTTTCSEEEEEETTEEEEEECHHHHHT-TTCHHHHHHHHHHHHHHHHHHHCC--------------------------
T ss_pred HHHHHhCCEEEEeeCCeeeccCCHHHHHH-hhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999998 6999999998774321100 0000000000000000000000
Q ss_pred ---cccccccc-ccccCccccCCCCC-CCc-------chhhcCCCchHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 041277 629 ---RRLSIVSL-SSSANSFAQGRGAS-QSN-------EEDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIY 696 (1133)
Q Consensus 629 ---~~~~~~~~-~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1133)
.+...... .........+.... ... +.+........+++++.+.+++|+.++++++++.+.+++.+.+
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 771 (1321)
T 4f4c_A 692 DIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTY 771 (1321)
T ss_dssp ------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHH
T ss_pred chhhhhhccccccccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 00000000000000 000 0011122234566777888999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCC
Q 041277 697 AFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDEN 776 (1133)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~ 776 (1133)
+++++.+++.+.... ........+|.++|++++++..++.+++.+++.+++.++..++|.++|++++++|++|||.++|
T Consensus 772 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~ 850 (1321)
T 4f4c_A 772 SVFFTSFMNVFAGNP-ADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQN 850 (1321)
T ss_dssp HHHHHHHHHHTSSCS-STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGG
T ss_pred HHHHHHHHHHhcCCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCC
Confidence 999888887665332 2223344567888888999999999999999999999999999999999999999999997668
Q ss_pred ChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 777 SSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKA 856 (1133)
Q Consensus 777 ~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~ 856 (1133)
++|+++||+++|++.++..++..+..++..++.++++++++++++|++++++++++|+++++.++..+..+....+..+.
T Consensus 851 ~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1321)
T 4f4c_A 851 ASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASE 930 (1321)
T ss_dssp CHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSH
T ss_pred ChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888887776666666666777
Q ss_pred HHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 041277 857 QAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYI 936 (1133)
Q Consensus 857 ~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~ 936 (1133)
.++...++.|+++|++|||+|+.|+++.++|.+..+...+...+..+..++..++...+..+..++++|+|+.++..+..
T Consensus 931 ~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~ 1010 (1321)
T 4f4c_A 931 FADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPP 1010 (1321)
T ss_dssp HHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCcc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred CHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCC
Q 041277 937 SSK--ALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPAR 1014 (1133)
Q Consensus 937 t~g--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~ 1014 (1133)
+.+ .++.++.++.....++..+..+.++++++..+++|++++++.+++.++.... .++++..|+|+|+||+|+||++
T Consensus 1011 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-~~~~~~~g~I~f~nVsf~Y~~~ 1089 (1321)
T 4f4c_A 1011 TMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLA-GEKKKLYGKVIFKNVRFAYPER 1089 (1321)
T ss_dssp SSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCC-SBCCCCCCCEEEEEEEECCTTS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCC-CCCCCCCCeEEEEEEEEeCCCC
Confidence 654 4444444455555677778888999999999999999999987765433222 2234457999999999999988
Q ss_pred CCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccH
Q 041277 1015 PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTI 1094 (1133)
Q Consensus 1015 ~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTI 1094 (1133)
++.+||+||||+|+|||+||||||||||||||+++|+|||||++|+|+|||+||+++++++||++|++|||||+||+|||
T Consensus 1090 ~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTI 1169 (1321)
T 4f4c_A 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSI 1169 (1321)
T ss_dssp CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEH
T ss_pred CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCC-CCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1095 RENIAYGA-SDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1095 reNI~~g~-~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
||||+||. |++++|||||+||++|++||||++||+||||
T Consensus 1170 reNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT 1209 (1321)
T 4f4c_A 1170 AENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFET 1209 (1321)
T ss_dssp HHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCS
T ss_pred HHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCC
Confidence 99999994 4578999999999999999999999999998
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.4e-149 Score=1473.61 Aligned_cols=1114 Identities=34% Similarity=0.607 Sum_probs=952.0
Q ss_pred ccchHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCC-------CC-------hhhhhhhHHHH
Q 041277 17 KNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSN-------VP-------IDVFTHNINKN 82 (1133)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~-------~~-------~~~~~~~~~~~ 82 (1133)
...+++++++|..+.++.+++++++++++.++..|+++++++.++|.+..... .. .......+..+
T Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (1284)
T 3g5u_A 31 PAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTY 110 (1284)
T ss_dssp --CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHH
Confidence 34678899999888888888889999999999999999999999987642100 00 00011223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHH
Q 041277 83 TVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPN 162 (1133)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~ 162 (1133)
.+++++++++.+++.+++.+++.+.++++..++|.++|+|++++|++|||+ + ++|++++|+++|++.+++.+...+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~-~-~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 111 AYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV-H-DVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS-C-CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-C-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888999999999999999999999999999999999999996 6 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHH
Q 041277 163 FVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESK 242 (1133)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~ 242 (1133)
++..++.++++++++++++|++++++++++|+++++..++.++.++..++.++..+++++.+.|+++|+++||+|++|+.
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~ 268 (1284)
T 3g5u_A 189 FFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 243 TINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNL 321 (1133)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~ 321 (1133)
+.++|.+..++..+...+.....++..+ ..++.++..++++|+|++++..|.+++|.++++++++.....++..+.+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 348 (1284)
T 3g5u_A 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNI 348 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888888 777888888999999999999999999999988888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCc
Q 041277 322 KYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSG 401 (1133)
Q Consensus 322 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsG 401 (1133)
..++++.++++|++++++.+|+.++....+..+....|.|+++||+|+|+++++.++|+|+||+|++||++|||||||||
T Consensus 349 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsG 428 (1284)
T 3g5u_A 349 EAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCG 428 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCC
Confidence 99999999999999999987765432222223334568899999999998655567999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHH
Q 041277 402 KSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNF 481 (1133)
Q Consensus 402 KSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1133)
||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|++|++||+|||.+|.++.++++++++++.++++++
T Consensus 429 KSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~ 508 (1284)
T 3g5u_A 429 KSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDF 508 (1284)
T ss_dssp HHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 041277 482 IRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 482 i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 561 (1133)
++++|+|++|.+||+|.+|||||||||+|||||+++|+|||||||||+||+++++.+++.+++..+|+|+|+||||++++
T Consensus 509 i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588 (1284)
T ss_dssp HHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHH
T ss_pred HHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred hcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhcCCCCCCCCcccccccccccCCCCCCcccccc--cccccccc
Q 041277 562 RNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKSSNMDMNSTSSRRL--SIVSLSSS 639 (1133)
Q Consensus 562 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 639 (1133)
..||+|+||++|+|+++|+|+|+++ .++.|++++..|....+.+...............+......... ........
T Consensus 589 ~~~d~i~vl~~G~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1284)
T 3g5u_A 589 RNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKS 667 (1284)
T ss_dssp TTCSEEEECSSSCCCCEECHHHHHH-TTSHHHHHHHHTC-----------------------------------------
T ss_pred HcCCEEEEEECCEEEEECCHHHHHh-CCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999998 68899999887654322111000000000000000000000000 00000000
Q ss_pred cCccccCCCCCCCcchhhcCCCchHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-hHHhhh
Q 041277 640 ANSFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDH-DEIKKK 718 (1133)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 718 (1133)
..............++..+......+++++++.+++|+.+.++++++++.+++.+.++++++.+++.+..... ......
T Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 747 (1284)
T 3g5u_A 668 ICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQN 747 (1284)
T ss_dssp ----------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHH
T ss_pred cccccccccccchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHH
Confidence 0000000000000000111122334566777788888888888889999999999999999888876654322 122233
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhh
Q 041277 719 TSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGD 798 (1133)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~ 798 (1133)
...|..++++++++..++.+++.+++.+.+.++..++|.++|++++++|++|||++++++|++++|+++|++.++..++.
T Consensus 748 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~ 827 (1284)
T 3g5u_A 748 SNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGS 827 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888889999999999999999999999999999999999999987799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhh
Q 041277 799 RTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFS 878 (1133)
Q Consensus 799 ~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~ 878 (1133)
.+..++..++.+++++++++.++|++++++++++|+++++.++..++.+....+..+..+.....+.|+++|+++||+|+
T Consensus 828 ~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~ 907 (1284)
T 3g5u_A 828 RLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLT 907 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999988888888888888888889999999999999999999
Q ss_pred chHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041277 879 SQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADA 958 (1133)
Q Consensus 879 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~ 958 (1133)
.|+++.++|.+..+...+...+...+.+...++.+.+..+..++++|+|++++..|.++.+.++.++.++.....++..+
T Consensus 908 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 987 (1284)
T 3g5u_A 908 REQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQV 987 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcC
Q 041277 959 GSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQ 1038 (1133)
Q Consensus 959 ~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~ 1038 (1133)
..+.+++.++..+++|++++++.+++.++.......+++..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||
T Consensus 988 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~ 1067 (1284)
T 3g5u_A 988 SSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGS 1067 (1284)
T ss_dssp TSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECC
Confidence 98999999999999999999997765443222222233456899999999999866556799999999999999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCC-CCCHHHHHHHHHH
Q 041277 1039 SGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASD-EIDESEIVEAAKA 1117 (1133)
Q Consensus 1039 SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~-~~sdeei~~Al~~ 1117 (1133)
||||||||+++|+|+|+|++|+|++||+|+++++++++|++|++|||||.||++||||||.+|++. ..+++++++|++.
T Consensus 1068 sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~ 1147 (1284)
T 3g5u_A 1068 SGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKE 1147 (1284)
T ss_dssp SSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998763 4689999999999
Q ss_pred cchHHHHhhcccccCC
Q 041277 1118 ANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1118 a~l~dfI~~LP~G~dT 1133 (1133)
++++++++++|+||||
T Consensus 1148 ~~~~~~i~~l~~gldt 1163 (1284)
T 3g5u_A 1148 ANIHQFIDSLPDKYNT 1163 (1284)
T ss_dssp HTCHHHHSSTTTGGGC
T ss_pred hCcHHHHHhCcccccc
Confidence 9999999999999997
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6e-90 Score=910.60 Aligned_cols=576 Identities=37% Similarity=0.574 Sum_probs=497.0
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++.+.++. +..++++++++++.++..|.++++++..++.+.... .........+.+++++++++..++.+
T Consensus 738 ~~~~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~i~~~ 812 (1321)
T 4f4c_A 738 TNLFEILYHARPH-ALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNP----ADFLSQGHFWALMFLVLAAAQGICSF 812 (1321)
T ss_dssp CCHHHHHHHTGGG-HHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCS----STTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777766554 556677888888889999999999999888764331 11223344566667777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.+++.+.+.++..++|.++|++++++|++|||...+++|+++||+++|++.+++.+...+..++..++.+++++++++
T Consensus 813 ~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~ 892 (1321)
T 4f4c_A 813 LMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAF 892 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeeh
Confidence 99999999999999999999999999999999985223899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|++++++++++|+++++.+++.++..+...+.++..++....+.|+++|+++||+|++|+.+.++|.+..+...+..
T Consensus 893 ~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~ 972 (1321)
T 4f4c_A 893 FYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEA 972 (1321)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888887777777777788889999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGT--VFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIM 335 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~ 335 (1133)
.+.....++..+ ...+..+..++++|+|++++..+..+.+. ++.++.++.....+++.+...+..+.++..|++|++
T Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~ 1052 (1321)
T 4f4c_A 973 IKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIF 1052 (1321)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777 66677777888899999999888766554 344444444444566677778889999999999999
Q ss_pred HHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC
Q 041277 336 EMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP 415 (1133)
Q Consensus 336 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~ 415 (1133)
++++.+++.+.... .....+..|.|+|+||+|+||++++.+||+|+||+|+|||++|||||||||||||+++|+|+|+|
T Consensus 1053 ~~l~~~~~~~~~~~-~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A 1053 GMLRKISKIDSLSL-AGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp HHHHCCCSSCTTCC-CSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred HHhhCcccCCCccC-CCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC
Confidence 99998876543322 22233456899999999999987777899999999999999999999999999999999999999
Q ss_pred CccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCC--CCCCHHHHHHHHHHhchHHHHHhCCCcccccc
Q 041277 416 LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGK--EDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493 (1133)
Q Consensus 416 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~ 493 (1133)
++|+|.+||+|+++++.+++|++|+||||||.||++||||||+||. ++.+++++++||+.+++++|+.++|+||||.|
T Consensus 1132 ~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~v 1211 (1321)
T 4f4c_A 1132 LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRV 1211 (1321)
T ss_dssp SSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEE
T ss_pred CCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEe
Confidence 9999999999999999999999999999999999999999999994 46789999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCC
Q 041277 494 GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDG 573 (1133)
Q Consensus 494 ~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 573 (1133)
||+|.+|||||||||||||||++||+|||||||||+||+++|+.|++.|++..+|+|+|+||||++++++||+|+||++|
T Consensus 1212 ge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G 1291 (1321)
T 4f4c_A 1212 GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNG 1291 (1321)
T ss_dssp TTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSS
T ss_pred cCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCcchhccccchhhHHHHHhhcC
Q 041277 574 QVMETGSHDELIQAESGLYTSLVRLQTT 601 (1133)
Q Consensus 574 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 601 (1133)
+|+|+|+|+||++ ++|.|++|++.|..
T Consensus 1292 ~IvE~Gth~eLl~-~~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1292 TIIEKGTHTQLMS-EKGAYYKLTQKQMT 1318 (1321)
T ss_dssp SEEEEECHHHHHH-CC------------
T ss_pred EEEEECCHHHHHh-CCcHHHHHHHHHHh
Confidence 9999999999998 68999999998764
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.4e-87 Score=816.91 Aligned_cols=568 Identities=25% Similarity=0.345 Sum_probs=507.5
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLE 100 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1133)
++++++|.+++ +..++++++++++.+++.++.|++++.++|...... + ...+..+.+++++++++..++.+++
T Consensus 11 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (587)
T 3qf4_A 11 SKTLARYLKPY-WIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARG--D----FSLVLKTGILMLIVALIGAVGGIGC 83 (587)
T ss_dssp CCCGGGGTGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--C----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--C----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566776665 444556667777777777888899999999764321 1 1223334444555566677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 101 GYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM 180 (1133)
Q Consensus 101 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1133)
.++..+.+.++..++|.++|+|++++|..+|++ . ++|++++|+++|++.+++.+...+..++..++.+++++++++++
T Consensus 84 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 161 (587)
T 3qf4_A 84 TVFASYASQNFGADLRRDLFRKVLSFSISNVNR-F-HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSI 161 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-S-CHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcc-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 6 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK 260 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 260 (1133)
+|++++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++.++...+
T Consensus 162 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 241 (587)
T 3qf4_A 162 NVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIIS 241 (587)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041277 261 QGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIK 339 (1133)
Q Consensus 261 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 339 (1133)
.....+...+ ..++..+..++++|+|++++..|.+++|.++++..+......|+..+...+..++++.+|++|+.++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 321 (587)
T 3qf4_A 242 AFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLN 321 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8877777777 666777778888999999999999999999999999988889999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 340 RVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
.+++.+... .....+...+.|+++||+|+|++. ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+
T Consensus 322 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~ 399 (587)
T 3qf4_A 322 EKPAIEEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR 399 (587)
T ss_dssp CCCSCCCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEE
T ss_pred CCCccCCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcE
Confidence 776543211 111222345789999999999753 356999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 420 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
|.+||+|+++++.+++|++|+||||+|++|++||+|||.++.++.+++++.++++.++++++++.+|+|++|.+|++|.+
T Consensus 400 i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~ 479 (587)
T 3qf4_A 400 VEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRN 479 (587)
T ss_dssp EEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCS
T ss_pred EEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCC
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
||||||||++||||++++|+|||||||||+||+++++.+++.+++..+|+|+|+||||++++..||+|++|++|+|+++|
T Consensus 480 LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFG 559 (587)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CcchhccccchhhHHHHHhhc
Q 041277 580 SHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
+|+|+++ .++.|++++..|.
T Consensus 560 ~~~el~~-~~~~~~~~~~~~~ 579 (587)
T 3qf4_A 560 THKELLE-HCKPYREIYESQF 579 (587)
T ss_dssp CHHHHHH-HCHHHHHHHHHHC
T ss_pred CHHHHHh-CCcHHHHHHHHHh
Confidence 9999998 5789999998775
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1e-86 Score=814.78 Aligned_cols=573 Identities=30% Similarity=0.413 Sum_probs=507.4
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCC-hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVP-IDVFTHNINKNTVHLLYLALGSWVACFL 99 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (1133)
+++++++.+++++ .++++++++++.++..++.|++++.++|.+....... ..........+...+++++++..++.++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (578)
T 4a82_A 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (578)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677787766544 4456667777777777788899999999875431100 0000000122233344455667778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 041277 100 EGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFL 179 (1133)
Q Consensus 100 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1133)
+.++..+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++.+...+..++.+++.++++++++++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 158 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-N-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFF 158 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-S-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 6 9999999999999999999999888889999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 041277 180 MLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGL 259 (1133)
Q Consensus 180 ~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 259 (1133)
++|++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|++..++..+...
T Consensus 159 ~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 238 (578)
T 4a82_A 159 LDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRAL 238 (578)
T ss_dssp HCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041277 260 KQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMI 338 (1133)
Q Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 338 (1133)
+.....+...+ ..++..+..++++++|++++..|.+|+|.+++++.++.....|+..+...+..++++.+|++|+.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l 318 (578)
T 4a82_A 239 KHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI 318 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888777 67777777888899999999999999999999999988888999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 339 KRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
+.+++.+... ...+.+...+.|+++||+|+|++. ++++|+|+||++++||++||+||||||||||+++|+|+++|++|
T Consensus 319 ~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 396 (578)
T 4a82_A 319 DEDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396 (578)
T ss_dssp TCCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred cCCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 8876543211 111222345789999999999753 34699999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCC
Q 041277 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 419 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 498 (1133)
+|.+||+|+++++.+++|++||||||+|++|++||+|||.+|.+..+++++.++++.++++++++++|+|++|.+|++|.
T Consensus 397 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~ 476 (578)
T 4a82_A 397 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV 476 (578)
T ss_dssp EEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGT
T ss_pred EEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCC
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
+||||||||++||||++++|+++|||||||+||+++++.+++.+++..+++|+|+||||+++++.||+|++|++|+++++
T Consensus 477 ~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 556 (578)
T 4a82_A 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVET 556 (578)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cCcchhccccchhhHHHHHhh
Q 041277 579 GSHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~~~~~ 599 (1133)
|+|+|+++ .++.|+++++.|
T Consensus 557 g~~~el~~-~~~~~~~~~~~q 576 (578)
T 4a82_A 557 GTHRELIA-KQGAYEHLYSIQ 576 (578)
T ss_dssp ECHHHHHH-TTSHHHHHHTTT
T ss_pred CCHHHHHh-CCcHHHHHHHhh
Confidence 99999998 578999998765
No 6
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-86 Score=816.56 Aligned_cols=569 Identities=29% Similarity=0.438 Sum_probs=512.1
Q ss_pred cchHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041277 18 NGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVAC 97 (1133)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (1133)
...+++++++.+++ +..++++++++++.++..++.|++++.++|.+.... + ...+..+.+.++++.++..++.
T Consensus 22 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~ 94 (598)
T 3qf4_B 22 TATLRRLLGYLRPH-TFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPR--R----FDLLPRYMLILGTIYALTSLLF 94 (598)
T ss_dssp HHHHHHHGGGTGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--C----GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--C----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888765 445556677777777778888899999999865321 1 1223344455556667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 041277 98 FLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVA 177 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1133)
+++.++..+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++.+...+..++.+++.++++++++
T Consensus 95 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l 172 (598)
T 3qf4_B 95 WLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR-T-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMM 172 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHH-S-CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999996 6 99999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHH
Q 041277 178 FLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQL 257 (1133)
Q Consensus 178 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 257 (1133)
++++|++++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+.
T Consensus 173 ~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~ 252 (598)
T 3qf4_B 173 FRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKV 252 (598)
T ss_dssp HHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 258 GLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIME 336 (1133)
Q Consensus 258 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 336 (1133)
..+.....+...+ ..++..+..++++++|++++..|.+++|.+++++.+......|+..+...+..++++.+|++|+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~ 332 (598)
T 3qf4_B 253 GTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFE 332 (598)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777777 667777778888999999999999999999999888888888999999999999999999999999
Q ss_pred HhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 337 MIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
+++.+++.+.. ......+..+.|+++||+|+|++ ++++|+|+||++++||++||+||||||||||+++|+|+++|+
T Consensus 333 ~l~~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 408 (598)
T 3qf4_B 333 ILDLEEEKDDP--DAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408 (598)
T ss_dssp HTTSCCCCCCS--SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS
T ss_pred HHcCCCCCCCC--CCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence 99877654321 11222334578999999999974 346999999999999999999999999999999999999999
Q ss_pred ccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 417 GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 417 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
+|+|.+||+|+++++.+++|++||||||+|++|++||+|||.+|.+..+++++.++++.++++++++.+|+|++|.+|++
T Consensus 409 ~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 488 (598)
T 3qf4_B 409 RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDN 488 (598)
T ss_dssp EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHH
T ss_pred CeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 99999999999999999999999999999999999999999999887888899999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|.+||||||||++||||++++|+|||||||||+||+++++.+++.+++..+|+|+|+||||+++++.||+|++|++|+++
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 568 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIV 568 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred eecCcchhccccchhhHHHHHhhc
Q 041277 577 ETGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
++|+|+|+++ +++.|++++..|.
T Consensus 569 ~~g~~~~l~~-~~~~~~~~~~~~~ 591 (598)
T 3qf4_B 569 EMGKHDELIQ-KRGFYYELFTSQY 591 (598)
T ss_dssp ECSCHHHHHH-TTCHHHHHHHHHH
T ss_pred EECCHHHHHh-CCCHHHHHHHHHh
Confidence 9999999998 5889999998765
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.6e-84 Score=798.85 Aligned_cols=574 Identities=36% Similarity=0.524 Sum_probs=489.7
Q ss_pred hHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 20 SFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFL 99 (1133)
Q Consensus 20 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (1133)
.+++++++.++.++ .++++++++++.++..++.|++++.++|.+.... .......+..+...++++.++..++.++
T Consensus 6 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (595)
T 2yl4_A 6 EARKLLGLAYPERR-RLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNP---TVDYSDNLTRLCLGLSAVFLCGAAANAI 81 (595)
T ss_dssp HHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCT---TSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---chhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777765543 3445666666666777777888999999754220 0000011222233344455566777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 041277 100 EGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFL 179 (1133)
Q Consensus 100 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1133)
+.++..+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++.+...+..++.+++.++++++++++
T Consensus 82 ~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 159 (595)
T 2yl4_A 82 RVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDK-T-RTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFF 159 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH-S-CHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999996 6 8999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 041277 180 MLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGL 259 (1133)
Q Consensus 180 ~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 259 (1133)
++|++++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...
T Consensus 160 ~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 239 (595)
T 2yl4_A 160 VSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLAR 239 (595)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041277 260 KQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMI 338 (1133)
Q Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 338 (1133)
+.....+...+ ..++..+..++++|+|++++..|.+|+|.+++++.+......|+..+...+..++++..+++|+.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l 319 (595)
T 2yl4_A 240 KEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELL 319 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777 66666777778899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccccccc-EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 339 KRVPKIDSDSMEGEILENVLGE-VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
+.+++.+... ....+....+. |+++||+|+|++++++++|+|+||++++||++||+||||||||||+++|+|+++|++
T Consensus 320 ~~~~~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~ 398 (595)
T 2yl4_A 320 EREPKLPFNE-GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS 398 (595)
T ss_dssp TCCCSSCSSC-SBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSE
T ss_pred cCCCccCCCC-CCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 8765533211 11111223467 999999999975433569999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCC---CCHHHHHHHHHHhchHHHHHhCCCccccccc
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKED---ASMEEVIEAAKASNAHNFIRQLPQQYDTQVG 494 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 494 (1133)
|+|.+||+|+.+++.+++|++||||||+|++|++||+|||.++.+. .+++++.++++.++++++++++|+|++|.+|
T Consensus 399 G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~ 478 (595)
T 2yl4_A 399 GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 478 (595)
T ss_dssp EEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCS
T ss_pred cEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCccccccccc
Confidence 9999999999999999999999999999999999999999998765 6788999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 495 ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 495 ~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
++|.+||||||||++||||++++|++||||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|+
T Consensus 479 ~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~ 558 (595)
T 2yl4_A 479 EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGK 558 (595)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTE
T ss_pred CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999878999999999999998899999999999
Q ss_pred EEeecCcchhccccchhhHHHHHhhc
Q 041277 575 VMETGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 575 i~~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
++++|+|+|+++++++.|+++++.|.
T Consensus 559 i~~~g~~~~l~~~~~~~~~~~~~~q~ 584 (595)
T 2yl4_A 559 ITEYGKHEELLSKPNGIYRKLMNKQS 584 (595)
T ss_dssp EEEEECSCC------C----------
T ss_pred EEEECCHHHHHhCCChHHHHHHHHhh
Confidence 99999999998745788999987764
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4.5e-84 Score=792.83 Aligned_cols=568 Identities=29% Similarity=0.416 Sum_probs=503.9
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.++.++ .++++++++++.++..++.|+++++++|.+.... + . .........+++++++..++.+
T Consensus 11 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~---~-~~~~~~~~~~~~~~~~~~~~~~ 83 (582)
T 3b5x_A 11 QTFKRLWTYIRLYKA-GLVVSTIALVINAAADTYMISLLKPLLDEGFGNA--E---S-NFLRILPFMILGLMFVRGLSGF 83 (582)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--c---h-HHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777665533 3455666667777777778889999999764321 1 0 1111122224455666778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
+..++..+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++.+...+..++.+++.+++++++++
T Consensus 84 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~-~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 161 (582)
T 3b5x_A 84 ASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ-E-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMF 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999996 6 899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+..
T Consensus 162 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 241 (582)
T 3b5x_A 162 WNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQT 241 (582)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+...+ ..++..+..++++|+|++++..|.+|+|.+++++.++.....|+..+...+..++++..+++|+.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~ 321 (582)
T 3b5x_A 242 MKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGL 321 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888777 7777777788889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+++.+. . ..+.+...+.|+++||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++
T Consensus 322 l~~~~~~~~-~--~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 397 (582)
T 3b5x_A 322 MDLETERDN-G--KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS 397 (582)
T ss_pred HcCCCcCCC-C--CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 987654321 1 11112234679999999999743 2459999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCC-CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGK-EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
|+|.+||+|+.+.+.+++|++||||||+|++|++||+|||.++. ++.++++++++++.++++++++++|+|+||.+|++
T Consensus 398 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 398 GSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred CEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 99999999999999999999999999999999999999999987 66788899999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|.+||||||||++||||++++|++||||||||+||+++++.+.+.+++..+|+|+|+||||+++++.||+|++|++|+++
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEII 557 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999987899999999999999999999999999999
Q ss_pred eecCcchhccccchhhHHHHHhhc
Q 041277 577 ETGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
++|+|+|+++ .++.|+++++.|.
T Consensus 558 ~~g~~~~l~~-~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 558 ERGRHADLLA-QDGAYAQLHRIQF 580 (582)
T ss_pred EECCHHHHHh-CCcHHHHHHHHhh
Confidence 9999999987 5789999998763
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=5.6e-84 Score=792.01 Aligned_cols=568 Identities=31% Similarity=0.469 Sum_probs=503.8
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.++.++ .++++++++++.++..++.|++++.++|.+... . .. .........++++.++..++.+
T Consensus 11 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~--~~-~~~~~~~~~~~~~~~~~~~~~~ 83 (582)
T 3b60_A 11 QTFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGK---T--DR-SVLLWMPLVVIGLMILRGITSY 83 (582)
T ss_dssp HHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTS---T--TH-HHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---C--ch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777765543 445566666777777777888999999975432 1 11 1111122224445566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.++..+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++.+...+..++..++.+++++++++
T Consensus 84 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 161 (582)
T 3b60_A 84 ISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-Q-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMF 161 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH-S-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999996 6 899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+..
T Consensus 162 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 241 (582)
T 3b60_A 162 YYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQG 241 (582)
T ss_dssp HHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+...+ ..++..+..++++|+|++++..|.+|+|.+++++.+......|+..+...+..++++..+++|+.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~ 321 (582)
T 3b60_A 242 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAI 321 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888777 6777777778889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+++.+. . ..+.+...+.|+++||+|+|+++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++
T Consensus 322 l~~~~~~~~-~--~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~ 397 (582)
T 3b60_A 322 LDSEQEKDE-G--KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397 (582)
T ss_dssp HHSCCSCCC-C--CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSE
T ss_pred HcCCCCccC-C--CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCC
Confidence 987655321 1 11112234679999999999742 2459999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCC-CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGK-EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
|+|.+||+|+++++.+++|++||||||+|++|++||+|||.++. ++.++++++++++.++++++++++|+|++|.+|++
T Consensus 398 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~ 477 (582)
T 3b60_A 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN 477 (582)
T ss_dssp EEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred CeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCC
Confidence 99999999999999999999999999999999999999999987 66788999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++..+|+|+|+||||+++++.||+|++|++|+++
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 557 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIV 557 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred eecCcchhccccchhhHHHHHhhc
Q 041277 577 ETGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
++|+|+|+++ .++.|+++++.|.
T Consensus 558 ~~g~~~~l~~-~~~~~~~~~~~q~ 580 (582)
T 3b60_A 558 ERGTHSELLA-QHGVYAQLHKMQF 580 (582)
T ss_dssp EEECHHHHHH-HTSSHHHHHHHTC
T ss_pred EecCHHHHHH-cCCHHHHHHHHhc
Confidence 9999999987 5789999998763
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4e-80 Score=815.02 Aligned_cols=581 Identities=37% Similarity=0.593 Sum_probs=511.9
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.++. +..++++++++++.+...|.++++++.+++.+.... ...........+..++++++++..++.+
T Consensus 691 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 767 (1284)
T 3g5u_A 691 ASFWRILKLNSTE-WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGG--PPETQRQNSNLFSLLFLILGIISFITFF 767 (1284)
T ss_dssp CCTTHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--STTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677765543 344566777788888889999999999998765331 1111122334455566677777888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.+++.+.++++..++|.++|++++++|++|||...+++|++++|+++|++.+++.++..+..++..+..+++++++++
T Consensus 768 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~ 847 (1284)
T 3g5u_A 768 LQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISL 847 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999995223899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
.++|++++++++++|+++++..+..+..++...+.++..++....+.|+++|+++||+|++|+.+.++|.+..+...+..
T Consensus 848 ~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~ 927 (1284)
T 3g5u_A 848 IYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNA 927 (1284)
T ss_dssp SSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888889999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....++..+ ...+.++..++++|+|++++..|.++.+.++.++.++.....+++.+......+.++..+++|+.++
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 1007 (1284)
T 3g5u_A 928 MKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRI 1007 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877 7778888889999999999999999999999888888777778777777777888999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+|+.+........+....+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++
T Consensus 1008 l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~ 1087 (1284)
T 3g5u_A 1008 IEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087 (1284)
T ss_dssp HHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSE
T ss_pred HcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 99877654322222223334678999999999986544579999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 495 (1133)
|+|.+||+|+++++.+++|++||||||||.+|++||+|||.++.+ ..++++++++++.++++++++++|+||||.+||
T Consensus 1088 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp EEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred CEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCC
Confidence 999999999999999999999999999999999999999999875 367899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
+|.+|||||||||+|||||+++|+|||||||||+||+++++.+++.|++..+|+|+|+||||++++..||||+||++|+|
T Consensus 1168 ~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i 1247 (1284)
T 3g5u_A 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKV 1247 (1284)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEE
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred EeecCcchhccccchhhHHHHHhhcCCC
Q 041277 576 METGSHDELIQAESGLYTSLVRLQTTTP 603 (1133)
Q Consensus 576 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 603 (1133)
+++|+|+|+++ +++.|+++++.|....
T Consensus 1248 ~~~g~~~~l~~-~~g~y~~l~~~q~~~~ 1274 (1284)
T 3g5u_A 1248 KEHGTHQQLLA-QKGIYFSMVSVQAGAK 1274 (1284)
T ss_dssp EEEECHHHHHH-SCSHHHHHHHHHC---
T ss_pred EEECCHHHHHh-CCCHHHHHHHHHhhcc
Confidence 99999999998 6899999999886544
No 11
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-60 Score=580.76 Aligned_cols=460 Identities=24% Similarity=0.361 Sum_probs=409.9
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 666 RRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFA 745 (1133)
Q Consensus 666 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1133)
++++++.+++|+.+.+++++.++.+++.+..|++++.+++....... ......+.+.++++.++..++.+++.++..
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD---FSLVLKTGILMLIVALIGAVGGIGCTVFAS 88 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788999999888888899999999999999999986543211 112233444555666777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041277 746 YMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLA 825 (1133)
Q Consensus 746 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~ 825 (1133)
+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|+++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 166 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVN--RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLS 166 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHH
Q 041277 826 LVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYA 905 (1133)
Q Consensus 826 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (1133)
+++++++|++++..++..+..++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|.+..++..+...+..+..
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (587)
T 3qf4_A 167 SVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLI 246 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCC
Q 041277 906 GIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKI 985 (1133)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 985 (1133)
....++...+..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++.+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 326 (587)
T 3qf4_A 247 VFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAI 326 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECC
Q 041277 986 EPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD 1065 (1133)
Q Consensus 986 ~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG 1065 (1133)
++.. .....++..|.|+|+||+|+|+++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 327 ~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 327 EEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp CCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred CCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC
Confidence 3211 111122346899999999999743 45699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1066 RDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1066 ~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+|+++++.+++|++|++|||||.||++||+|||++|.+ ..+++++++|++.++++|+++++|+||||
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~ 471 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDS 471 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS-SCCHHHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC-CCCHHHHHHHHHHhCcHHHHHhcccchhh
Confidence 99999999999999999999999999999999999976 46899999999999999999999999987
No 12
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.8e-60 Score=579.31 Aligned_cols=462 Identities=23% Similarity=0.384 Sum_probs=415.7
Q ss_pred chHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 662 VPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQH 741 (1133)
Q Consensus 662 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1133)
...+++++++.+++++.+.++++++++.+++.+..|++++.+++....... ......+.++++++.++..++.+++.
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR---FDLLPRYMLILGTIYALTSLLFWLQG 98 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888999999999889889999999999999999999887643211 12233455666677778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041277 742 YNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIA 821 (1133)
Q Consensus 742 ~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 821 (1133)
++..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++
T Consensus 99 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 176 (598)
T 3qf4_B 99 KIMLTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVN 176 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTHHHH--HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 57999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHH
Q 041277 822 WRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQ 901 (1133)
Q Consensus 822 w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~ 901 (1133)
|++++++++++|+.+++..+..+..++..++.++..++..+.+.|+++|+++||+|+.|+++.++|++..++..+...+.
T Consensus 177 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 256 (598)
T 3qf4_B 177 VILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKA 256 (598)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Q 041277 902 SWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDR 981 (1133)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~ 981 (1133)
.++.+...++...+..+..++++++|++++..|.+++|.+++++.+......|+..+...+..++.+..+++|+.++++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 336 (598)
T 3qf4_B 257 QIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336 (598)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888899999999999999999999999999999888999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeE
Q 041277 982 YTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061 (1133)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I 1061 (1133)
+++.+. +.....++..|+|+|+||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 337 ~~~~~~--~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 412 (598)
T 3qf4_B 337 EEEKDD--PDAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412 (598)
T ss_dssp CCCCCC--SSCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred CCCCCC--CCCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence 654321 111122334689999999999963 3469999999999999999999999999999999999999999999
Q ss_pred EECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1062 ~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++||+|+++++.+++|++|++|||||.||++||+|||.+|++ ..+++++++|++.++++++++++|+||||
T Consensus 413 ~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 483 (598)
T 3qf4_B 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSDHFIKHLPEGYET 483 (598)
T ss_dssp EETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGC
T ss_pred EECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 999999999999999999999999999999999999999976 46788999999999999999999999987
No 13
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.5e-62 Score=543.37 Aligned_cols=278 Identities=42% Similarity=0.670 Sum_probs=251.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCC
Q 041277 320 NLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSG 399 (1133)
Q Consensus 320 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sG 399 (1133)
....++++.++++|++++++.+++..... .........+.|+++||+|+|++. .++|+|+||+|++||++|||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCC
Confidence 45677888999999999998765433211 111122335689999999999743 459999999999999999999999
Q ss_pred CcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchH
Q 041277 400 SGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAH 479 (1133)
Q Consensus 400 sGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~ 479 (1133)
||||||+++|+|+|+|++|+|.+||+++.+++..++|++||||||+|++|++||+|||.+|.+..+.++++++++.++++
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 041277 480 NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLS 559 (1133)
Q Consensus 480 ~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 559 (1133)
+++..+|+|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.+++.|++.|+++.+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred hhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhcC
Q 041277 560 TIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTT 601 (1133)
Q Consensus 560 ~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 601 (1133)
++..||+|++|++|+|++.|+|+++++ .++.|++++..|..
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~-~~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLS-RGGVYADMWQLQQG 291 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHH-HTSHHHHHHHHHHC
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHh-cChHHHHHHHHHHh
Confidence 999999999999999999999999998 68999999988764
No 14
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=9.7e-60 Score=576.25 Aligned_cols=464 Identities=23% Similarity=0.347 Sum_probs=411.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhh----hHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKT----SIYAFCFLGLAVFTLVINIIQ 740 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 740 (1133)
+++++++.+++++.+.++++++++.+++.+..|++++.+++.............. ..+...++++.++..++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999888888888888888999999998876532210001111 223344455566677888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 741 HYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFI 820 (1133)
Q Consensus 741 ~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 820 (1133)
.++..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 5799999999999999999999888888888888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHH
Q 041277 821 AWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIR 900 (1133)
Q Consensus 821 ~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~ 900 (1133)
+|++++++++++|+++++..+..+..++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|++..++..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q 041277 901 QSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMD 980 (1133)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~ 980 (1133)
..++.+...++...+..+..++++++|++++..|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCe
Q 041277 981 RYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060 (1133)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~ 1060 (1133)
.+++.++.. ...+.++..|+|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 765533211 111122346899999999999743 456999999999999999999999999999999999999999999
Q ss_pred EEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1061 I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|++||+|+++++.+++|++|++|||||.||++||+|||.+|.| ..+++++++|++.++++|+++++|+||||
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp~g~~t 469 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDT 469 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhCcchhhh
Confidence 9999999999999999999999999999999999999999976 46889999999999999999999999987
No 15
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.3e-58 Score=568.82 Aligned_cols=467 Identities=28% Similarity=0.428 Sum_probs=408.4
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 664 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
.+++++.+.+++++.+.++++++++.+++.++.|++++.+++................+...++++.++..++.+++.++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (595)
T 2yl4_A 6 EARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYL 85 (595)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888888888888888888765321110000112223344555666677888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.++++++++++++|+
T Consensus 86 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 163 (595)
T 2yl4_A 86 MQTSGQRIVNRLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 163 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHH--HSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999998 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 824 LALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 824 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
+++++++++|+++++..+..+..++..++.++..++..+.+.|+++|+++||+|+.|+++.++|++..++..+...+..+
T Consensus 164 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 243 (595)
T 2yl4_A 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Q 041277 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYT 983 (1133)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 983 (1133)
......++...+..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..++++..+++|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 323 (595)
T 2yl4_A 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP 323 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCccc-EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEE
Q 041277 984 KIEPEDPEGHQPERITGN-IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062 (1133)
Q Consensus 984 ~~~~~~~~~~~~~~~~g~-I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~ 1062 (1133)
+.++.. ....+++..|+ |+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 324 ~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 402 (595)
T 2yl4_A 324 KLPFNE-GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS 402 (595)
T ss_dssp SSCSSC-SBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEE
T ss_pred ccCCCC-CCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence 432211 11111223578 9999999999754445799999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCC--CCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1063 IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASD--EIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1063 IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~--~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+||+|+++++.+++|++|++|||||.||++||+|||.+|.+. ..++++++++++.++++|+++++|+||||
T Consensus 403 ~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~ 475 (595)
T 2yl4_A 403 LDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNT 475 (595)
T ss_dssp ETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred ECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccc
Confidence 999999999999999999999999999999999999998753 26889999999999999999999999987
No 16
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.5e-58 Score=561.73 Aligned_cols=461 Identities=25% Similarity=0.398 Sum_probs=407.9
Q ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 663 PSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHY 742 (1133)
Q Consensus 663 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1133)
..+++++++.+++++.+.+++++.++.+++.++.+++++.+++....... .....+....++++.++..++.+++.+
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b5x_A 11 QTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE---SNFLRILPFMILGLMFVRGLSGFASSY 87 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777778888888888888888888888889999888876542211 111111223355566777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041277 743 NFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAW 822 (1133)
Q Consensus 743 ~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w 822 (1133)
+..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.++++++++++++|
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b5x_A 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSW 165 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999998 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHH
Q 041277 823 RLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQS 902 (1133)
Q Consensus 823 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~ 902 (1133)
++++++++++|+.+++..+..+..++..++.++..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b5x_A 166 QLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLV 245 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC
Q 041277 903 WYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRY 982 (1133)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~ 982 (1133)
+......++...+..+..++++++|++++..|.+++|.+++++.+......|+..+...+..++++..+++|+.++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b5x_A 246 SAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLE 325 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEE
Q 041277 983 TKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062 (1133)
Q Consensus 983 ~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~ 1062 (1133)
++.++ ...+.++..|.|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|+
T Consensus 326 ~~~~~---~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 401 (582)
T 3b5x_A 326 TERDN---GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401 (582)
T ss_pred CcCCC---CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 44321 111112235789999999999742 24699999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChhHHhhcccccccccccccccHHHHhccCC-CCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1063 IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGA-SDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1063 IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~-~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+||+|+++++.+++|++|++|||||.+|++||+|||.+|. + ..+++++++|++.++++++++++|+||||
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 402 LDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG-EYTREQIEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred ECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCC-CCCHHHHHHHHHHCCCHHHHHhCcccccc
Confidence 9999999999999999999999999999999999999986 4 46889999999999999999999999997
No 17
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=6.7e-58 Score=561.00 Aligned_cols=462 Identities=26% Similarity=0.422 Sum_probs=407.8
Q ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 663 PSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHY 742 (1133)
Q Consensus 663 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1133)
..+++++++.+++++.+.+++++.++.+++.+..+++++.+++....... . ....+....++++.++..++.+++.+
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--R-SVLLWMPLVVIGLMILRGITSYISSY 87 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--H-HHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888888888888888888888888875432111 1 11111223355566777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041277 743 NFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAW 822 (1133)
Q Consensus 743 ~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w 822 (1133)
+..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 165 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999998 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHH
Q 041277 823 RLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQS 902 (1133)
Q Consensus 823 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~ 902 (1133)
++++++++++|+++++..+..+..++..++.++..++..+.+.|+++|+++||+|+.|+++.++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b60_A 166 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245 (582)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC
Q 041277 903 WYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRY 982 (1133)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~ 982 (1133)
+......++..++..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..++++..+++|+.++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b60_A 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 325 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEE
Q 041277 983 TKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062 (1133)
Q Consensus 983 ~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~ 1062 (1133)
++.++ ...+.++..|.|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|+
T Consensus 326 ~~~~~---~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 401 (582)
T 3b60_A 326 QEKDE---GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401 (582)
T ss_dssp CSCCC---CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred CCccC---CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE
Confidence 54321 111112235789999999999732 24699999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1063 IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1063 IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+||+|+++++.+++|++|++|||||.+|++||+|||.+|.....+++++++|++.++++++++++|+||||
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp ETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGS
T ss_pred ECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccc
Confidence 99999999999999999999999999999999999999862246889999999999999999999999987
No 18
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.6e-52 Score=455.21 Aligned_cols=240 Identities=46% Similarity=0.778 Sum_probs=222.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..|+++||+|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 469999999999421 2359999999999999999999999999999999999999999999999999998888888999
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
||||||+|.+|+.||+||+.++.+..+.+++.++++.+++.++++++|.|+++.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999986556677888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHh
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
++||||||||+||+.+++.+.+.|+++.+|+|+|+|||+++.+..||+|++|++|++++.|+++++.+.+.+.|.+++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999998877999999999999988899999999999999999999987436788888765
Q ss_pred h
Q 041277 599 Q 599 (1133)
Q Consensus 599 ~ 599 (1133)
+
T Consensus 245 ~ 245 (247)
T 2ff7_A 245 Q 245 (247)
T ss_dssp H
T ss_pred h
Confidence 4
No 19
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=9.4e-52 Score=452.70 Aligned_cols=240 Identities=45% Similarity=0.756 Sum_probs=221.7
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.|+++||+|+|++...+++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|+++.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753224599999999999999999999999999999999999987 8999999999988888888999
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|+||||+|.+|+.|++||+.++......+++.++++.+++.+++..+|++++|.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999986555677888899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHh
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++ ..+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK-LNGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHH-HTSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHh-cChHHHHHHHh
Confidence 99999999999999999999999998877899999999999988899999999999999999999987 46788888876
Q ss_pred hc
Q 041277 599 QT 600 (1133)
Q Consensus 599 ~~ 600 (1133)
+.
T Consensus 254 ~~ 255 (260)
T 2ghi_A 254 QS 255 (260)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 20
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.6e-51 Score=451.57 Aligned_cols=241 Identities=44% Similarity=0.718 Sum_probs=218.7
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
.+.|+++||+|+|++..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999997521245999999999999999999999999999999999999999999999999998888888889
Q ss_pred hceEEecCCCCccccHHHHHhcCCCCCCH-HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 438 QMGLVSQEPALFATSIKENILFGKEDASM-EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~ti~eni~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+||||||+|.+|+.||+|||.++.+.... +++.++++..++.++++.+|+|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998654333 56677778888999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHH
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTS 594 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 594 (1133)
+|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++++ ..+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~-~~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHH-HTSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh-CcHHHHH
Confidence 9999999999999999999999999998753 899999999999988899999999999999999999987 4678888
Q ss_pred HHHhh
Q 041277 595 LVRLQ 599 (1133)
Q Consensus 595 ~~~~~ 599 (1133)
++..+
T Consensus 253 ~~~~~ 257 (271)
T 2ixe_A 253 MVEAL 257 (271)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 87654
No 21
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=7e-52 Score=450.13 Aligned_cols=236 Identities=46% Similarity=0.770 Sum_probs=217.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 235999999999999999999999999999999999999999999999999998877667788999
Q ss_pred EEecCCCCccccHHHHHhcC-CCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 441 LVSQEPALFATSIKENILFG-KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
||||+|.+|+.|++||+.++ .+....+++.++++.+++.++++++|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997 44556778889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhh
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 599 (1133)
+||||||||+||+.+++.+.+.|+++.+|+|+|++||+++.+..||+|++|++|++++.|+++++.+ ....|..++..+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 238 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVSEQ 238 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH-HCHHHHHHHHCC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh-ccHHHHHHHHhh
Confidence 9999999999999999999999988777999999999999887899999999999999999999986 466777777644
No 22
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-49 Score=453.37 Aligned_cols=234 Identities=27% Similarity=0.457 Sum_probs=216.6
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
.+.|+++||+|+|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.+++...+|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 4679999999999632 3459999999999999999999999999999999999998 9999999999999999999999
Q ss_pred hceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 438 QMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
+||||||++.+|+.||+||+.+.. ....+++.++++.+++.+++++.|.+++|.++++|.+||||||||++|||||+++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998644 3467889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHH
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTS 594 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 594 (1133)
|++||||||||+||+.+++.+++.|++..+++|+|+|||+++.+..||||++|++|+|++.|+++|+.+.+...|..
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 99999999999999999999999999877789999999999988889999999999999999999998755555543
No 23
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.1e-48 Score=419.11 Aligned_cols=225 Identities=29% Similarity=0.493 Sum_probs=201.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 24599999999999999999999999999999999999999999999998 49
Q ss_pred eEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 440 GLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 440 ~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
+||||+|++++.|++||+.++... ..++..++.+.+++.+.+..+|.|++|.+++++.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999989999999997542 2334556667777778888889999999999999999999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHH---HHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHH
Q 041277 520 ILLLDEATSALDSESERVVQEALD---KAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~---~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 596 (1133)
+||||||||+||+.+++.+.+.+. +..+++|+|++||+++.+..||+|++|++|++++.|+++++++ ..+.|.+++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~ 226 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGAFAEFL 226 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHH-HTSHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhh-ccHHHHHHH
Confidence 999999999999999999999884 3446899999999999988899999999999999999999987 577888888
Q ss_pred Hhhc
Q 041277 597 RLQT 600 (1133)
Q Consensus 597 ~~~~ 600 (1133)
..|.
T Consensus 227 ~~~~ 230 (237)
T 2cbz_A 227 RTYA 230 (237)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 7664
No 24
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5e-48 Score=415.63 Aligned_cols=221 Identities=27% Similarity=0.432 Sum_probs=196.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.|+++||+|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 468999999999632 24599999999999999999999999999999999999999999999998 4
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|+||||+|++|+.|++||+.++.. ....+..++++.+++.++++.+|.++++.+++++.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999753 2344556677778888999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHH-HHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHH
Q 041277 519 RILLLDEATSALDSESERVVQEAL-DKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSL 595 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 595 (1133)
+++|||||||+||+.+++.+.+.+ ++..+++|+|++||+++.+..||++++|++|++++.|+++++.+ ..+.|.++
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~ 226 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN-LQPDFSSK 226 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT-C--CHHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh-cChHHHHH
Confidence 999999999999999999999864 55556899999999999887899999999999999999999976 34455544
No 25
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6e-48 Score=435.17 Aligned_cols=225 Identities=27% Similarity=0.458 Sum_probs=191.8
Q ss_pred ccEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---
Q 041277 359 GEVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW--- 434 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~--- 434 (1133)
.-|+++||+++|+... ...+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++..++..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996432 245899999999999999999999999999999999999999999999999999988665
Q ss_pred HhhhceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 435 LRSQMGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
+|++||||||++.+|+. ||+||+.++.. .... +++.++++.+++.++ ......+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~-----------~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-----------HDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGG-----------TTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHH
Confidence 47789999999999876 99999998632 1222 234455555554433 334456899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
++|||||+.+|++||||||||+||+.+++.+.+.|+++. .|+|+|+|||+++.+.. ||||++|++|+++++|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999874 38999999999999876 999999999999999999999
Q ss_pred ccccchhhHH
Q 041277 585 IQAESGLYTS 594 (1133)
Q Consensus 585 ~~~~~~~~~~ 594 (1133)
+..+...|.+
T Consensus 252 ~~~p~~~~~~ 261 (366)
T 3tui_C 252 FSHPKTPLAQ 261 (366)
T ss_dssp HSSCCSHHHH
T ss_pred HhCCCcHHHH
Confidence 8755555544
No 26
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.5e-47 Score=420.76 Aligned_cols=214 Identities=28% Similarity=0.481 Sum_probs=183.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC--CCCHHHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID--KLQLKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 437 (1133)
-|+++||+|+|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999743 34999999999999999999999999999999999999999999999999984 233456788
Q ss_pred hceEEecCC--CCccccHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 438 QMGLVSQEP--ALFATSIKENILFGKE--DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 438 ~i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
+||||||+| .+|..||+||+.++.. ..+.+ ++.++++..++.+ .....+.+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCCcccCCHHHHHHHH
Confidence 999999998 4778899999998632 12232 3444444444432 334455689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++++|++++++.
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998875 38999999999999875 99999999999999999999986
No 27
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.8e-47 Score=412.58 Aligned_cols=215 Identities=30% Similarity=0.430 Sum_probs=178.5
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH----
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL---- 435 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~---- 435 (1133)
|+++||+|+|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2358999999999999999999999999999999999999999999999999998887653
Q ss_pred hhhceEEecCCCCccc-cHHHHHhcCCC-----CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 436 RSQMGLVSQEPALFAT-SIKENILFGKE-----DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~-ti~eni~~~~~-----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
|++||||||+|.+|+. ||+||+.++.. ....+ ++.++++..++.+. .....+.+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh----------hhhCChhhCCHHHH
Confidence 4569999999999986 99999987421 12222 23333333332211 12445678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||++|||||+.+|++||||||||+||+.+++.+.+.++++. + |+|+|+|||+++.++.||+|++|++|++++.++.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 99999999999999999999999999999999999999874 3 899999999999776799999999999999998877
Q ss_pred hc
Q 041277 584 LI 585 (1133)
Q Consensus 584 l~ 585 (1133)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 53
No 28
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-46 Score=406.73 Aligned_cols=218 Identities=24% Similarity=0.435 Sum_probs=185.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 438 (1133)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 359999999999999999999999999999999999999999999999999988776654 456
Q ss_pred ceEEecCCCCccc-cHHHHHhcCC-CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 439 MGLVSQEPALFAT-SIKENILFGK-EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
||||||++.+|.. |++||+.++. +....++..+.+ .+.++.++ |++...++.+.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 9999999864 211112222221 22344443 34445566778999999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999998875 58999999999988754 99999999999999999999865
No 29
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.2e-46 Score=424.74 Aligned_cols=220 Identities=28% Similarity=0.479 Sum_probs=185.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC--CHHHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL--QLKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~--~~~~~r~ 437 (1133)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+. .....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999974 3599999999999999999999999999999999999999999999999998332 2233467
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCCCC--C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKEDA--S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+||||||++.+|+. ||+|||.|+.... . .+++.++++..++.++.+ ....+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-----------RYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-----------SCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHH
Confidence 89999999999965 9999999975321 1 234556666665544433 3446899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
||||+.+|++||||||||+||+.++..+++.+.+.. .|+|+|+|||+++.+.. ||||++|++|+|++.|+++++...
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999998776653 48999999999998865 999999999999999999999865
Q ss_pred cchhhH
Q 041277 588 ESGLYT 593 (1133)
Q Consensus 588 ~~~~~~ 593 (1133)
+...+.
T Consensus 230 p~~~~~ 235 (359)
T 3fvq_A 230 PADLDA 235 (359)
T ss_dssp CSCHHH
T ss_pred cccHHH
Confidence 444443
No 30
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.2e-46 Score=411.31 Aligned_cols=213 Identities=29% Similarity=0.467 Sum_probs=182.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC--CCCHHHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID--KLQLKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 437 (1133)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999964 35999999999999999999999999999999999999999999999999985 334556788
Q ss_pred hceEEecCCCCccc-cHHHHHhcCC---CCCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGK---EDASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~---~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
+||||||++.+|+. |++||+.++. ..... +++.++++..++. ......+.+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-----------DKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-----------GGTTSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCChhhCCHHHHHHHH
Confidence 89999999999876 9999998852 11222 2334444444433 2334455689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999998874 48999999999999875 99999999999999999999875
No 31
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2e-46 Score=411.03 Aligned_cols=213 Identities=27% Similarity=0.424 Sum_probs=186.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.+.+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999974 3599999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEEecCCCC-ccccHHHHHhcCCCC----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 440 GLVSQEPAL-FATSIKENILFGKED----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 440 ~~v~Q~~~l-~~~ti~eni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
+|++|++.+ ++.||+||+.++... ...+++.++++..++.++ ......+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLAL-----------AQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTT-----------TTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhH-----------hcCCcccCCHHHHHHHHHHHHH
Confidence 999999987 466999999987432 223455556665554332 2234458999999999999999
Q ss_pred hh------CCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 515 IK------APRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 515 ~~------~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
++ +|++||||||||+||+.+++.+.+.|+++. + ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 999999999999999999999999999874 3 5799999999999875 9999999999999999999997
Q ss_pred c
Q 041277 586 Q 586 (1133)
Q Consensus 586 ~ 586 (1133)
+
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 6
No 32
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.4e-46 Score=427.04 Aligned_cols=219 Identities=28% Similarity=0.455 Sum_probs=188.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3599999999999999999999999999999999999999999999999999887765 3679
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||+|++.+|+. ||+|||.|+.. .... +++.++++..++.++. .....+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGT-----------TCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhHCCHHHHHHHHHHH
Confidence 999999999975 99999998632 1222 3455555555554433 3445689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|++||||||||+||+..+..+.+.|+++. + |.|+|+|||+++.+.. ||||++|++|++++.|+++++...+.
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 9999999999999999999999999999999874 3 8999999999998865 99999999999999999999986555
Q ss_pred hhhHH
Q 041277 590 GLYTS 594 (1133)
Q Consensus 590 ~~~~~ 594 (1133)
..|..
T Consensus 227 ~~~v~ 231 (381)
T 3rlf_A 227 DRFVA 231 (381)
T ss_dssp BHHHH
T ss_pred cHHHH
Confidence 55544
No 33
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.4e-46 Score=408.25 Aligned_cols=213 Identities=27% Similarity=0.452 Sum_probs=183.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC----------
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK---------- 429 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~---------- 429 (1133)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4899999999964 359999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHHhhhceEEecCCCCccc-cHHHHHhcCC---CCCC----HHHHHHHHHHhchHHH-HHhCCCcccccccCCC
Q 041277 430 LQL---KWLRSQMGLVSQEPALFAT-SIKENILFGK---EDAS----MEEVIEAAKASNAHNF-IRQLPQQYDTQVGERG 497 (1133)
Q Consensus 430 ~~~---~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~---~~~~----~~~~~~~~~~~~~~~~-i~~l~~g~~t~~~~~g 497 (1133)
.+. ..+|++||||||++.+|+. ||+||+.++. .... .+++.++++..++.++ ..+ ..
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK-----------YP 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS-----------CG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcC-----------Cc
Confidence 443 3467889999999999876 9999998842 1122 2345556666665554 333 34
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
.+||||||||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 5899999999999999999999999999999999999999999998874 48999999999999875 999999999999
Q ss_pred EeecCcchhcc
Q 041277 576 METGSHDELIQ 586 (1133)
Q Consensus 576 ~~~g~~~~l~~ 586 (1133)
++.|+++++.+
T Consensus 232 ~~~g~~~~~~~ 242 (262)
T 1b0u_A 232 EEEGDPEQVFG 242 (262)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999999875
No 34
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.2e-45 Score=404.15 Aligned_cols=214 Identities=21% Similarity=0.368 Sum_probs=181.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH-HHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK-WLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 438 (1133)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. ..|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999876643 45778
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCCCC---------------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 439 MGLVSQEPALFA-TSIKENILFGKED---------------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 439 i~~v~Q~~~l~~-~ti~eni~~~~~~---------------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
||||||++.+|. .|++||+.++... ...++.. ..+.+.++.+ |++........+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999999886 4999999986421 1111111 1123344444 444555666779999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
|||||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999999998874 48999999999999865 99999999999999999
Q ss_pred cch
Q 041277 581 HDE 583 (1133)
Q Consensus 581 ~~~ 583 (1133)
+++
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 998
No 35
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8e-46 Score=397.05 Aligned_cols=208 Identities=26% Similarity=0.381 Sum_probs=176.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---Hh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---LR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~r 436 (1133)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999964 35999999999999999999999999999999999999999999999999998776543 34
Q ss_pred -hhceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 437 -SQMGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 -~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++|+||||++.+|.. |++||+.++.. .... +++.++++..+ +.........+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELG-----------LGDKLSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT-----------CTTCTTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhhCChhhCCHHHHHHH
Confidence 679999999998865 99999987531 1111 22333333333 33334445668999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 581 (1133)
+|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+..||+|++|++|+++++|+.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999998874 58999999999998866999999999999998863
No 36
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-45 Score=417.88 Aligned_cols=217 Identities=29% Similarity=0.511 Sum_probs=186.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999964 3589999999999999999999999999999999999999999999999999877653 5789
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCC--C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDA--S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||||++.+|+. ||+||+.|+.... . .+++.++++..++.++.++ ...+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR-----------KPTQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999999999975 9999999975321 1 2345566666665544433 34589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988743 8999999999998865 99999999999999999999986443
Q ss_pred hhh
Q 041277 590 GLY 592 (1133)
Q Consensus 590 ~~~ 592 (1133)
..|
T Consensus 227 ~~~ 229 (359)
T 2yyz_A 227 NMF 229 (359)
T ss_dssp BHH
T ss_pred cHH
Confidence 333
No 37
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-45 Score=402.47 Aligned_cols=213 Identities=26% Similarity=0.411 Sum_probs=183.7
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 56999999999963 359999999999999999999999999999999999999999999999999876 45667889
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
||||||++.+|.. |++||+.++.. .... +++.++++..++.++ ......+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-----------IKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG-----------GGSBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchH-----------hcCChhhCCHHHHHHHHHH
Confidence 9999999999876 99999987421 1122 234445555544332 3334568999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999998875 58999999999999876 99999999999999999998864
No 38
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-45 Score=419.27 Aligned_cols=217 Identities=34% Similarity=0.508 Sum_probs=185.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999964 3599999999999999999999999999999999999999999999999999877653 4689
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||||++.+|+. ||+||+.|+.. .... +++.++++..++.++. .....+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLL-----------NRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-----------hCChhhCCHHHHHHHHHHH
Confidence 999999999975 99999998632 1122 3345555555544333 3344689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+.+.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988743 8999999999998765 99999999999999999999986443
Q ss_pred hhh
Q 041277 590 GLY 592 (1133)
Q Consensus 590 ~~~ 592 (1133)
..|
T Consensus 227 ~~~ 229 (362)
T 2it1_A 227 YKF 229 (362)
T ss_dssp BHH
T ss_pred chH
Confidence 333
No 39
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.7e-45 Score=416.13 Aligned_cols=218 Identities=28% Similarity=0.478 Sum_probs=186.0
Q ss_pred ccEEEEEEEEEc-CCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh
Q 041277 359 GEVEFKCVQFAY-PSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 359 ~~i~~~~v~~~y-~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
..|+++|++++| ++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .++
T Consensus 13 ~~l~~~~l~~~y~g~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r 87 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG---ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKR 87 (355)
T ss_dssp EEEEEEEEEECCTTS---TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGS
T ss_pred ceEEEEEEEEEEcCC---CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhC
Confidence 469999999999 53 348999999999999999999999999999999999999999999999999987654 367
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+||||+|++.+|+. ||+|||.|+.. ... .+++.++++..++.++.++ ...+||||||||++|
T Consensus 88 ~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-----------~~~~LSGGq~QRval 156 (355)
T 1z47_A 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANR-----------FPHELSGGQQQRVAL 156 (355)
T ss_dssp SEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHH
Confidence 89999999999975 99999998632 112 2345556666655444333 345899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
||||+.+|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus 157 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 157 ARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999988743 8999999999998865 999999999999999999999764
Q ss_pred cchhh
Q 041277 588 ESGLY 592 (1133)
Q Consensus 588 ~~~~~ 592 (1133)
+...|
T Consensus 237 p~~~~ 241 (355)
T 1z47_A 237 PGTLF 241 (355)
T ss_dssp CSSHH
T ss_pred ccchH
Confidence 33333
No 40
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.2e-45 Score=407.49 Aligned_cols=214 Identities=23% Similarity=0.340 Sum_probs=181.9
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC--CCCHHHHh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID--KLQLKWLR 436 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~--~~~~~~~r 436 (1133)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 35999999999964 35999999999999999999999999999999999999999999999999987 67777788
Q ss_pred hhceEEecCCCC-ccc--cHHHHHhcCCCC-------CCH---HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 437 SQMGLVSQEPAL-FAT--SIKENILFGKED-------ASM---EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 437 ~~i~~v~Q~~~l-~~~--ti~eni~~~~~~-------~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
++||||+|++.+ |.. |++||+.++... ... +++.++++..++ +........+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG 165 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM-----------SAKAQQYIGYLSTG 165 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC-----------GGGTTSBGGGSCHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC-----------hhHhcCChhhCCHH
Confidence 899999999865 444 999999986421 111 223333433333 33344556789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeE--EEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTT--IIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~--i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+ |+|||+++.+.. ||+|++|++|++++.|
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999998874 48999 999999999865 9999999999999999
Q ss_pred Ccchhcc
Q 041277 580 SHDELIQ 586 (1133)
Q Consensus 580 ~~~~l~~ 586 (1133)
+++++.+
T Consensus 246 ~~~~~~~ 252 (279)
T 2ihy_A 246 AVEDILT 252 (279)
T ss_dssp EHHHHCS
T ss_pred CHHHHhc
Confidence 9999875
No 41
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.4e-45 Score=416.84 Aligned_cols=217 Identities=29% Similarity=0.423 Sum_probs=180.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4899999999964 3589999999999999999999999999999999999999999999999999877653 5689
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKED--ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||||++.+|+. ||+|||.|+... ... +++.++++..++.++. .....+||||||||++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-----------NRYPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-----------TSCTTTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999975 999999998532 222 2345555555554433 3445689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 234 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988743 8999999999998764 99999999999999999999986443
Q ss_pred hhh
Q 041277 590 GLY 592 (1133)
Q Consensus 590 ~~~ 592 (1133)
..|
T Consensus 235 ~~~ 237 (372)
T 1v43_A 235 SVF 237 (372)
T ss_dssp BHH
T ss_pred cHH
Confidence 334
No 42
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=5.8e-45 Score=400.63 Aligned_cols=212 Identities=27% Similarity=0.508 Sum_probs=184.8
Q ss_pred EEEEEEEEEcCCCCC--CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 361 VEFKCVQFAYPSRPE--SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
|+++|++++|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 3599999999999999999999999999999999999999999999999998642 66788
Q ss_pred ceEEecCC--CCccccHHHHHhcCCCC-----CCHHHHHHHHHHhchH--HHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 439 MGLVSQEP--ALFATSIKENILFGKED-----ASMEEVIEAAKASNAH--NFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 439 i~~v~Q~~--~l~~~ti~eni~~~~~~-----~~~~~~~~~~~~~~~~--~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
||||+|+| .++..|++||+.++... ...+++.++++..++. ++.++.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999996 45678999999986421 2245677788887776 5554444 589999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999874 58999999999999876 99999999999999999998865
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.1e-45 Score=404.53 Aligned_cols=237 Identities=24% Similarity=0.407 Sum_probs=184.5
Q ss_pred HHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 333 RIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 333 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
|+.++++.+++.. . ........+.|+++||+|.+ .++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus 17 ~~~~~~~~~~~~~-~---~~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 17 GFGELFEKAKQNN-N---NRKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp HHHHHHHHCC---------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred HHHHHhccccccc-c---cccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 6677776543321 1 11112223569999999864 2489999999999999999999999999999999999
Q ss_pred cCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCccccc
Q 041277 413 YAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492 (1133)
Q Consensus 413 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 492 (1133)
++|++|+|.++| +|+||||++.+|++|++||+. +.. .....+.++++..++.+++..+|.++++.
T Consensus 88 ~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 88 LEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp SCEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred CCCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccch
Confidence 999999999998 499999999999999999998 542 23445566777788889999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHH-HHHhCCCeEEEEecCcchhhcCCEEEEEe
Q 041277 493 VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL-DKAVVGRTTIIIAHRLSTIRNADVIAVVQ 571 (1133)
Q Consensus 493 ~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 571 (1133)
+++++.+||||||||++|||||+++|++||||||||+||+.+++.+.+.+ +++.+++|+|++||+++.+..||+|++|+
T Consensus 153 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~ 232 (290)
T 2bbs_A 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232 (290)
T ss_dssp C----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEE
T ss_pred hcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999864 44556899999999999887899999999
Q ss_pred CCeEEeecCcchhccccchhhHH
Q 041277 572 DGQVMETGSHDELIQAESGLYTS 594 (1133)
Q Consensus 572 ~G~i~~~g~~~~l~~~~~~~~~~ 594 (1133)
+|++++.|+++++.. ....|..
T Consensus 233 ~G~i~~~g~~~~l~~-~~~~~~~ 254 (290)
T 2bbs_A 233 EGSSYFYGTFSELQN-LRPDFSS 254 (290)
T ss_dssp TTEEEEEECHHHHHH-HCHHHHH
T ss_pred CCeEEEeCCHHHHhh-hcHHHHH
Confidence 999999999999865 2334443
No 44
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.4e-45 Score=412.76 Aligned_cols=215 Identities=29% Similarity=0.507 Sum_probs=185.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++ . +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 689999999963 3 8999999999999999999999999999999999999999999999999987554 467899
Q ss_pred EEecCCCCccc-cHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 441 LVSQEPALFAT-SIKENILFGKE---DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
||||++.+|+. ||+||+.|+.. ....+++.++++..++.++.++ ...+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHHHHc
Confidence 99999999976 99999998631 1122566667776665544333 345899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhh
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLY 592 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 592 (1133)
+|++||||||||+||+.+++.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+...|
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 999999999999999999999999998874 38999999999998765 99999999999999999999986444434
No 45
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.8e-45 Score=393.83 Aligned_cols=207 Identities=29% Similarity=0.434 Sum_probs=177.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++ +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ..|++||
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999987643 2467899
Q ss_pred EEecCCCCccc-cHHHHHhcCCCCCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 441 LVSQEPALFAT-SIKENILFGKEDAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
||||++.+|+. |++||+.++..... .+++.++++..++ +........+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI-----------AHLLDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTC-----------TTTTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCC-----------HHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999876 99999999753222 1223333433333 33334455689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999998874 38999999999998765 99999999999999999999875
No 46
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.1e-45 Score=415.93 Aligned_cols=219 Identities=26% Similarity=0.429 Sum_probs=185.4
Q ss_pred cEEEEEEEEEcCCCCCCc--cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC---HHH
Q 041277 360 EVEFKCVQFAYPSRPESI--IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ---LKW 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~--~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~---~~~ 434 (1133)
.|+++|++++|++ .. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 35 899999999999999999999999999999999999999999999999986521 223
Q ss_pred HhhhceEEecCCCCccc-cHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 435 LRSQMGLVSQEPALFAT-SIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l~~~-ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
.+++||||||++.+|+. ||+||+.|+... .. .+++.++++..++.++.++ ...+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-----------FPRELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHH
Confidence 46789999999999976 999999997532 12 2345556666655444333 345899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
++|||||+.+|++||||||||+||+.+++.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998874 38999999999998865 999999999999999999999
Q ss_pred ccccchhh
Q 041277 585 IQAESGLY 592 (1133)
Q Consensus 585 ~~~~~~~~ 592 (1133)
.+.+...|
T Consensus 229 ~~~p~~~~ 236 (353)
T 1oxx_K 229 YDNPVSIQ 236 (353)
T ss_dssp HHSCSSHH
T ss_pred HhCcccHH
Confidence 76443333
No 47
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=6.2e-45 Score=415.86 Aligned_cols=217 Identities=27% Similarity=0.447 Sum_probs=184.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC------CCHH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK------LQLK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~------~~~~ 433 (1133)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+ .+..
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 3899999999964 359999999999999999999999999999999999999999999999999866 4432
Q ss_pred HHhhhceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 434 WLRSQMGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
+++||||||++.+|+. ||+||+.|+.. .... +++.++++..++.++.+ ....+|||||||
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~Q 146 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQ 146 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHH
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CCcccCCHHHHH
Confidence 5689999999999965 99999998632 1222 34555555555544333 334689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|++|||||+.+|++||||||||+||+.+++.+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999998874 38999999999998865 99999999999999999999
Q ss_pred hccccchhh
Q 041277 584 LIQAESGLY 592 (1133)
Q Consensus 584 l~~~~~~~~ 592 (1133)
+...+...|
T Consensus 227 l~~~p~~~~ 235 (372)
T 1g29_1 227 VYDKPANTF 235 (372)
T ss_dssp HHHSCSBHH
T ss_pred HHhCcccHH
Confidence 986443334
No 48
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.8e-44 Score=391.19 Aligned_cols=208 Identities=21% Similarity=0.332 Sum_probs=184.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-++++|++++ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|+++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3789999986 3899999999999999999999999999999999999999 9999999999888888889999
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
+||+|++.+|.. |++||+.++.. ....+++.++++..++.++ ....+.+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998865 99999998742 2235566666666665443 2344568999999999999999999
Q ss_pred CC-------EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhcc
Q 041277 518 PR-------ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 518 ~~-------illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|+ +||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999999874 5899999999999985 599999999999999999999875
No 49
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.6e-43 Score=439.73 Aligned_cols=196 Identities=23% Similarity=0.343 Sum_probs=160.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..+...|++++|++ +.+|+|+||++++|++++|+||||||||||+++|+| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 35888899999974 359999999999999999999999999999999996 554 5544321 124
Q ss_pred ceEEecCC-CCc-cccHHHHHhcCCCCCCHHHHHHHHHHhch-HHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 439 MGLVSQEP-ALF-ATSIKENILFGKEDASMEEVIEAAKASNA-HNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 439 i~~v~Q~~-~l~-~~ti~eni~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
++|++|++ .++ ..|+.||+.+..... .+++.++++..++ .+..++.+ .+||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~-----------~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPI-----------SALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBG-----------GGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 78999986 444 459999998621112 5677778888877 34444332 479999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEE-eecCcchhc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM-ETGSHDELI 585 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 585 (1133)
.+|++|||||||++||+.+.+.+.+.|++ .|+|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 99999999999999999999999999988 68999999999999876 9999999999997 467766553
No 50
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.1e-44 Score=394.89 Aligned_cols=210 Identities=26% Similarity=0.365 Sum_probs=170.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc--cCCCccEEEECCeecCCCCHHHH-hh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAPLGGEIILDGVSIDKLQLKWL-RS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 437 (1133)
|+++||+|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... +.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 789999999964 3599999999999999999999999999999999999 89999999999999988876655 45
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCC---C--CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCC-CChHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKE---D--ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ-MSGGQKQ 506 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~---~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~-LSgGqkq 506 (1133)
.++||+|+|.+|+. |++||+.++.. . ... +++.++++..++. .........+ |||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----------~~~~~~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWD----------ESYLSRYLNEGFSGGEKK 150 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCC----------GGGGGSBTTCC----HHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCC----------hhHhcCCcccCCCHHHHH
Confidence 69999999999876 99999987421 1 111 2233333333321 1112233456 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc--CCEEEEEeCCeEEeecCcch
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN--ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|++|||||+++|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999999875 48999999999999876 59999999999999999873
No 51
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.2e-43 Score=387.95 Aligned_cols=216 Identities=22% Similarity=0.302 Sum_probs=177.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc--cCCCccEEEECCeecCCCCHHHH-h
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAPLGGEIILDGVSIDKLQLKWL-R 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~--~~~~~G~i~~~g~~~~~~~~~~~-r 436 (1133)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... +
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999963 3599999999999999999999999999999999999 57999999999999988776655 4
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCC---------CCCCHHHHHHHHHHhchHHHHHhCCCccccc-ccCCCC-CCChHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGK---------EDASMEEVIEAAKASNAHNFIRQLPQQYDTQ-VGERGV-QMSGGQ 504 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~---------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~-~LSgGq 504 (1133)
+.|+||+|+|.+|+. |++||+.++. +..+.++..+ .+.+.++.+ |+++. ...... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 469999999999876 9999987531 1112222111 122333333 33322 233333 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc--CCEEEEEeCCeEEeecCc
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN--ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~ 581 (1133)
|||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999998874 48999999999998875 899999999999999999
Q ss_pred chhc
Q 041277 582 DELI 585 (1133)
Q Consensus 582 ~~l~ 585 (1133)
+++.
T Consensus 250 ~~~~ 253 (267)
T 2zu0_C 250 TLVK 253 (267)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8764
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3e-44 Score=436.35 Aligned_cols=193 Identities=22% Similarity=0.310 Sum_probs=153.3
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE---------EECCeecCCCCHHH
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI---------ILDGVSIDKLQLKW 434 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i---------~~~g~~~~~~~~~~ 434 (1133)
+|++++|+++ ..+|+|+| ++++||+++|+||||||||||+++|+|+++|++|++ .++|.++.+.....
T Consensus 95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 8999999643 24899999 999999999999999999999999999999999996 45665543321111
Q ss_pred --HhhhceEEecCCC----CccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 435 --LRSQMGLVSQEPA----LFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 435 --~r~~i~~v~Q~~~----l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
.+..+++++|+.. ++.+|++||+..... .+++.++++..++.+.. .....+||||||||+
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~lgL~~~~-----------~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEEVVKELELENVL-----------DRELHQLSGGELQRV 237 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHTTCTTGG-----------GSBGGGCCHHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHHHHHHcCCCchh-----------CCChhhCCHHHHHHH
Confidence 1235889998743 344699999975321 23345555555553322 233458999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCC
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDG 573 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 573 (1133)
+|||||+++|++||||||||+||+.++..+.+.|+++. +|+|+|+|||+++.+.. ||+|++|+++
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999998874 48999999999998876 9999999753
No 53
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.7e-44 Score=388.65 Aligned_cols=207 Identities=18% Similarity=0.334 Sum_probs=178.0
Q ss_pred EEEEEEEEEcCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 361 VEFKCVQFAYPSR-PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
|+++|++++|++. ..+++|+|+||+++ ||+++|+||||||||||+++|+|++ |++|+|.++|+++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 6899999999641 01359999999999 9999999999999999999999999 9999999999998754 23 6789
Q ss_pred e-EEecCCCCccccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHHHHHHHHHHHh
Q 041277 440 G-LVSQEPALFATSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 440 ~-~v~Q~~~l~~~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
+ ||||+|.+ ..|++||+.++.+ ....+++.++++..++ + ......+.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKL-----------GEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTC-----------CGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCC-----------ChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 8899999987532 2334555555555443 3 3445566799999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CC-EEEEEeCCeEEeecCcchhcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-AD-VIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d-~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++|++|||||||++||+.+++.+.+.|+++.+ |+|++||+++.+.. || ++++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999988754 99999999998864 99 999999999999999999875
No 54
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.5e-43 Score=385.59 Aligned_cols=200 Identities=26% Similarity=0.408 Sum_probs=170.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999962 13599999999999999999999999999999999999999999998 24579
Q ss_pred eEEecCCCCc-cccHHHHHhcCCCC-------CC---HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 440 GLVSQEPALF-ATSIKENILFGKED-------AS---MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 440 ~~v~Q~~~l~-~~ti~eni~~~~~~-------~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
|||||++.+| ..|++||+.++... .. .+++.++++..++.+ .....+.+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH-----------LAKREFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-----------HhcCChhhCCHHHHHHH
Confidence 9999999887 56999999986420 11 133445555554433 23344568999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+|||||+.+|++||||||||+||+.+++.+.+.|+++. + |+|+|++||+++.+. .||++++|++|+ ++.|+++++.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999999999998875 3 899999999999985 499999999999 9999999987
Q ss_pred c
Q 041277 586 Q 586 (1133)
Q Consensus 586 ~ 586 (1133)
+
T Consensus 217 ~ 217 (253)
T 2nq2_C 217 T 217 (253)
T ss_dssp C
T ss_pred C
Confidence 5
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-43 Score=426.47 Aligned_cols=196 Identities=22% Similarity=0.306 Sum_probs=151.6
Q ss_pred EEE-EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE---------EECCeecCCC
Q 041277 361 VEF-KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI---------ILDGVSIDKL 430 (1133)
Q Consensus 361 i~~-~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i---------~~~g~~~~~~ 430 (1133)
.++ +|++++|++. ..+|+|+| +|++||+++|+||||||||||+++|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 455 5899999743 24899999 999999999999999999999999999999999995 3566554322
Q ss_pred CHHH--HhhhceEEecCCCCc----cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 431 QLKW--LRSQMGLVSQEPALF----ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 431 ~~~~--~r~~i~~v~Q~~~l~----~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
.... .+..+++++|+..++ .+|+.||+..... .+++.++++..++.++ ......+|||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~---~~~~~~~l~~lgl~~~-----------~~~~~~~LSgGe 163 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE---TGKLEEVVKALELENV-----------LEREIQHLSGGE 163 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS---SSCHHHHHHHTTCTTT-----------TTSBGGGCCHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH---HHHHHHHHHHcCCChh-----------hhCChhhCCHHH
Confidence 1111 123588999975443 3589999864221 1234555555554322 223345899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCC
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDG 573 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 573 (1133)
|||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999998874 48999999999999876 9999999753
No 56
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-42 Score=367.81 Aligned_cols=194 Identities=19% Similarity=0.344 Sum_probs=164.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..|++|
T Consensus 10 ~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 5899999999963 4999999999999999999999999999999999999999999999999886 257889
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC----CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE----DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
+||||+|.+|.. |++||+.++.. ....+++.++++..+ ++.. ++.+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE-----------VLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTT-----------CCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcC-----------CCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999876 99999987521 122444555544443 3344 556779999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998875 48999999999999887 66655 556665
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-41 Score=408.59 Aligned_cols=191 Identities=20% Similarity=0.302 Sum_probs=146.9
Q ss_pred EEEEEcCCCCCCccccceeEEe-eCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE-----------EECCeecCCCCH
Q 041277 365 CVQFAYPSRPESIIFKDFCLTI-PAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI-----------ILDGVSIDKLQL 432 (1133)
Q Consensus 365 ~v~~~y~~~~~~~~l~~i~l~i-~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i-----------~~~g~~~~~~~~ 432 (1133)
+++.+|+.+ -++-..|.+ ++||++||+||||||||||+++|+|+++|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 467789754 355555655 4899999999999999999999999999999998 577766543211
Q ss_pred HHHh------hhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 433 KWLR------SQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 433 ~~~r------~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
.... ..+.++.|.+.++.+|+++++...... +++.++++..++.+.. .....+|||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~---~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~Q 145 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDER---GKKDEVKELLNMTNLW-----------NKDANILSGGGLQ 145 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCS---SCHHHHHHHTTCGGGT-----------TSBGGGCCHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchhH---HHHHHHHHHcCCchhh-----------cCChhhCCHHHHH
Confidence 1111 224455566667778999987643221 2344555555543322 2234589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCC
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDG 573 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G 573 (1133)
|++|||||+.+|+|||||||||+||+.+...+.+.|+++.+|+|+|+|||+++.+.. ||+|++|++|
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 999999999999999999999999999999999999998779999999999999876 9999999764
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.7e-40 Score=412.01 Aligned_cols=201 Identities=26% Similarity=0.400 Sum_probs=131.8
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHH---------------------HHHHhccCCC-------ccEEEECCeec
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVI---------------------ALLQRFYAPL-------GGEIILDGVSI 427 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll---------------------~~l~~~~~~~-------~G~i~~~g~~~ 427 (1133)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3489999999999999999999999999998 8899999998 45566666554
Q ss_pred CCCCHHHHhhhceEEecCCCCc--------------------cccHHHHHhcCCC-CCC--HHHH-----HHHHHHhchH
Q 041277 428 DKLQLKWLRSQMGLVSQEPALF--------------------ATSIKENILFGKE-DAS--MEEV-----IEAAKASNAH 479 (1133)
Q Consensus 428 ~~~~~~~~r~~i~~v~Q~~~l~--------------------~~ti~eni~~~~~-~~~--~~~~-----~~~~~~~~~~ 479 (1133)
... .++.+++|+|.+.++ ..|++||+.+... ... ..+. .++.+..
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 322 234566666654332 3489999987421 000 0111 1111111
Q ss_pred HHHHhCCCccccc-ccCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEe
Q 041277 480 NFIRQLPQQYDTQ-VGERGVQMSGGQKQRIAIARAIIKAPR--ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIA 555 (1133)
Q Consensus 480 ~~i~~l~~g~~t~-~~~~g~~LSgGqkqri~iARal~~~~~--illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~it 555 (1133)
+.++.+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +|+|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 123333 22221 234556899999999999999999998 999999999999999999999998874 589999999
Q ss_pred cCcchhhcCCEEEEE------eCCeEEeecCcchhc
Q 041277 556 HRLSTIRNADVIAVV------QDGQVMETGSHDELI 585 (1133)
Q Consensus 556 H~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~ 585 (1133)
|+++.+..||+|++| ++|++++.|+++++.
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999988889999999 788888888776654
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-39 Score=391.98 Aligned_cols=195 Identities=22% Similarity=0.313 Sum_probs=145.8
Q ss_pred EEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE-----------EECCeecCCCCHH
Q 041277 365 CVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI-----------ILDGVSIDKLQLK 433 (1133)
Q Consensus 365 ~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i-----------~~~g~~~~~~~~~ 433 (1133)
|++++|+.+ ...|++++ ++++||++||+||||||||||+++|+|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 568889743 24677777 689999999999999999999999999999999998 3344333322222
Q ss_pred HHhhhce--EEecCCCC----cc---ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 434 WLRSQMG--LVSQEPAL----FA---TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 434 ~~r~~i~--~v~Q~~~l----~~---~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
.+.+.+. +.+|.... +. .++.+++.... ....+++.++++..++.++. .....+|||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGe 226 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIKILQLENVL-----------KRDIEKLSGGE 226 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHHHHTCTGGG-----------GSCTTTCCHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHHHcCCcchh-----------CCChHHCCHHH
Confidence 2333333 23332211 11 25666665432 23445666666666554332 33446899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
|||++|||||+++|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|.
T Consensus 227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999999999999999999999999999999999999875 48999999999999876 99999998653
No 60
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.9e-38 Score=350.94 Aligned_cols=240 Identities=18% Similarity=0.241 Sum_probs=193.6
Q ss_pred HhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEc
Q 041277 291 MYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAY 370 (1133)
Q Consensus 291 ~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y 370 (1133)
..+..+-+.+.+|+.+..+ ..++..+...+..++++..+.+|+.++++.+++.... . . ......+.|+++||+|+|
T Consensus 36 a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~-~-~-~~~~~~~~i~~~~vs~~y 111 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG-E-G-SWKSILTFFNYQNIELIT 111 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS-S-C-CTHHHHHHHHHTTCCHHH
T ss_pred HHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-C-C-cccccCCeEEEEEEEEEc
Confidence 3445556677777766555 4678888889999999999999999999865432111 0 1 111123458999999999
Q ss_pred CCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcc
Q 041277 371 PSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA 450 (1133)
Q Consensus 371 ~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~ 450 (1133)
+ .++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|.
T Consensus 112 ~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~ 166 (305)
T 2v9p_A 112 F----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWL 166 (305)
T ss_dssp H----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGG
T ss_pred C----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccc
Confidence 6 35999999999999999999999999999999999999 7988 467899999999
Q ss_pred ccHHH-HHhcCCCCCCHHHHHHHHHHhchHHHHHh-CCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc
Q 041277 451 TSIKE-NILFGKEDASMEEVIEAAKASNAHNFIRQ-LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528 (1133)
Q Consensus 451 ~ti~e-ni~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 528 (1133)
+|++| ||.++. +.++ +++++++. +|+|++ |.+|||||||| |||++++|+||| ||
T Consensus 167 ~ti~~~ni~~~~-~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts 222 (305)
T 2v9p_A 167 ASLADTRAALVD-DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TS 222 (305)
T ss_dssp GGGTTCSCEEEE-EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EE
T ss_pred ccHHHHhhccCc-cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----EC
Confidence 99998 999863 3332 34567777 899987 67999999999 999999999999 99
Q ss_pred CCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhcC
Q 041277 529 ALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTT 601 (1133)
Q Consensus 529 ~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 601 (1133)
+||+++++.+.. +|||++.+..||+| +|++|++++.|+|+++ ++.|++++..+..
T Consensus 223 ~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~~~ 277 (305)
T 2v9p_A 223 NIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRLDL 277 (305)
T ss_dssp SSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTTTC
T ss_pred CCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHccc
Confidence 999999888752 29999999999999 9999999999999998 5788888776543
No 61
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.5e-34 Score=351.29 Aligned_cols=199 Identities=23% Similarity=0.267 Sum_probs=165.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 5899999999963 26899999999999999999999999999999999999999999862 369
Q ss_pred eEEecCCCC-ccccHHHHHhcC-CCC-CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 440 GLVSQEPAL-FATSIKENILFG-KED-ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 440 ~~v~Q~~~l-~~~ti~eni~~~-~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
||+||++.+ +..||.||+... ... ...+.+.++++..++ .........+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI-----------IDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC-----------TTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC-----------chHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 466999998753 110 012223333333332 223344456899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeC--CeEEeecCcchhcc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD--GQVMETGSHDELIQ 586 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 586 (1133)
+|++|||||||++||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |++...|++++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999874 58999999999999875 999999986 88888999999875
No 62
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-34 Score=348.88 Aligned_cols=199 Identities=23% Similarity=0.262 Sum_probs=164.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|++ ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 5899999999963 26899999999999999999999999999999999999999999862 369
Q ss_pred eEEecCCCC-ccccHHHHHhcC-CCC-CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 440 GLVSQEPAL-FATSIKENILFG-KED-ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 440 ~~v~Q~~~l-~~~ti~eni~~~-~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
|||||++.. +..||.||+... .+. ...+.+.++++.. |+.........+||||||||++|||||+.
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL-----------GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 456999988643 110 1122222222222 23333445567899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeC--CeEEeecCcchhcc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD--GQVMETGSHDELIQ 586 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 586 (1133)
+|++|||||||++||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999874 48999999999999875 999999986 78889999998865
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.1e-34 Score=342.25 Aligned_cols=201 Identities=21% Similarity=0.226 Sum_probs=165.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..++++|++++|++ ..|++.||++++||+++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------I 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------C
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------e
Confidence 35889999999964 3588889999999999999999999999999999999999999998763 5
Q ss_pred ceEEecCCCC-ccccHHHHHhcCCCC---CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 439 MGLVSQEPAL-FATSIKENILFGKED---ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 439 i~~v~Q~~~l-~~~ti~eni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
++|+||++.. +..||+||+.+.... ...+.+.++++..++. ........+||||||||++|||||
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-----------RLLESNVNDLSGGELQKLYIAATL 400 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-----------GCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-----------HHhcCChhhCCHHHHHHHHHHHHH
Confidence 8999999865 467999999864221 1222334444444433 233445568999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeC--CeEEeecCcchhcc
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD--GQVMETGSHDELIQ 586 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 586 (1133)
+++|++|||||||++||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |++...+++.++..
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 99999999999999999999999999999874 48999999999999876 999999986 56667777776643
No 64
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.1e-34 Score=318.77 Aligned_cols=169 Identities=36% Similarity=0.537 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCC
Q 041277 961 MTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSG 1040 (1133)
Q Consensus 961 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SG 1040 (1133)
.+.+++.+..+++|++++++.+++..... ...+.+...|.|+|+||+|+|++ +.++|+||||+|++||++|||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCC
Confidence 45677888899999999998765543211 11112234588999999999963 3469999999999999999999999
Q ss_pred CCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcch
Q 041277 1041 SGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANA 1120 (1133)
Q Consensus 1041 SGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l 1120 (1133)
||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||+|.||++||+|||.+|.+ ..+++++++|++.+++
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l 169 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGI 169 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999999999999975 4688999999999999
Q ss_pred HHHHhhcccccCC
Q 041277 1121 HDFIAGLNEGYDT 1133 (1133)
Q Consensus 1121 ~dfI~~LP~G~dT 1133 (1133)
++++..+|+||||
T Consensus 170 ~~~i~~lp~gl~t 182 (306)
T 3nh6_A 170 HDAIMAFPEGYRT 182 (306)
T ss_dssp HHHHHHSTTGGGC
T ss_pred HHHHHhccchhhh
Confidence 9999999999986
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.3e-33 Score=348.91 Aligned_cols=196 Identities=26% Similarity=0.403 Sum_probs=151.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-|+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 38999999999743 245899999999999999999999999999999999999999999999862 147
Q ss_pred eEEecCCCC-----ccccHHHHHhc-------------------------------------------------------
Q 041277 440 GLVSQEPAL-----FATSIKENILF------------------------------------------------------- 459 (1133)
Q Consensus 440 ~~v~Q~~~l-----~~~ti~eni~~------------------------------------------------------- 459 (1133)
+|++|++.. ...|+++++.+
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 777776521 12355555432
Q ss_pred -----------CCC-----------------------------------------CCCHHHHHHHHHHhchHHHHHhCCC
Q 041277 460 -----------GKE-----------------------------------------DASMEEVIEAAKASNAHNFIRQLPQ 487 (1133)
Q Consensus 460 -----------~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~ 487 (1133)
+.. ....+++.+.++..+
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lG---------- 888 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLG---------- 888 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTT----------
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcC----------
Confidence 100 001122223333333
Q ss_pred ccccc--ccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-C
Q 041277 488 QYDTQ--VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-A 564 (1133)
Q Consensus 488 g~~t~--~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~ 564 (1133)
++.. ......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. |
T Consensus 889 -L~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~ 965 (986)
T 2iw3_A 889 -LDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLT 965 (986)
T ss_dssp -CCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTC
T ss_pred -CCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhC
Confidence 3221 13345689999999999999999999999999999999999999999988765 5799999999999865 9
Q ss_pred CEEEEEeCCeEEeecC
Q 041277 565 DVIAVVQDGQVMETGS 580 (1133)
Q Consensus 565 d~i~~l~~G~i~~~g~ 580 (1133)
|+|++|++|++++.|+
T Consensus 966 DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 966 EEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CEEECCBTTBCCC---
T ss_pred CEEEEEECCEEEEeCC
Confidence 9999999999988774
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.4e-33 Score=335.98 Aligned_cols=198 Identities=23% Similarity=0.361 Sum_probs=162.3
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCC-----CEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAG-----KTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g-----~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
++++|+|++. ..+++|+||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5678888742 34799999999998 8899999999999999999999999999972 11 236
Q ss_pred ceEEecCCCC-ccccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 439 MGLVSQEPAL-FATSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 439 i~~v~Q~~~l-~~~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
++|+||++.. |..|+++|+..... ....+...++++..++. ........+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-----------~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-----------DIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-----------TTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999754 67799999864322 12333344444444432 2234455689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeC--CeEEeecCcchhccc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD--GQVMETGSHDELIQA 587 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~~ 587 (1133)
.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998863 48999999999999876 999999996 999999999999873
No 67
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=2.4e-31 Score=331.38 Aligned_cols=200 Identities=25% Similarity=0.402 Sum_probs=147.1
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHH----------------------hccCCCccEEEECCeecCCCCHHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQ----------------------RFYAPLGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~----------------------~~~~~~~G~i~~~g~~~~~~~~~~ 434 (1133)
.+|+|+||+|++||++||+||||||||||+++|+ |+. +.+|.|.+++.++...+...
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTTCC
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCCcc
Confidence 4899999999999999999999999999998764 222 33468999998876543211
Q ss_pred Hhh-----------------------------------------hceEEecCCCCc------------------------
Q 041277 435 LRS-----------------------------------------QMGLVSQEPALF------------------------ 449 (1133)
Q Consensus 435 ~r~-----------------------------------------~i~~v~Q~~~l~------------------------ 449 (1133)
.+. ..|+++|+..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 110 113333332211
Q ss_pred ---------cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC--
Q 041277 450 ---------ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP-- 518 (1133)
Q Consensus 450 ---------~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~-- 518 (1133)
..|++||+.+.......++..+. +..+.-+ +...++.+.+||||||||++|||||+++|
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~---------l~~~~l~-~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~ 564 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASIPKIKRKLET---------LYDVGLG-YMKLGQPATTLSGGEAQRVKLAAELHRRSNG 564 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHH---------HHHTTCT-TSBTTCCGGGCCHHHHHHHHHHHHHHSCCCS
T ss_pred cCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHH---------HHHcCCc-hhhccCCchhCCHHHHHHHHHHHHHhhCCCC
Confidence 34888888875432111222222 2332111 12345667799999999999999999887
Q ss_pred -CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEE------eCCeEEeecCcchhccc
Q 041277 519 -RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV------QDGQVMETGSHDELIQA 587 (1133)
Q Consensus 519 -~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~ 587 (1133)
++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+..||+|++| ++|+|+++|+++|+.+.
T Consensus 565 p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 565 RTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp CEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 5999999999999999999999998875 589999999999998889999999 89999999999999763
No 68
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=6.1e-30 Score=320.03 Aligned_cols=207 Identities=31% Similarity=0.492 Sum_probs=151.6
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHH---------HHHHhccCC------Ccc------EEEECCeecCCCCH----
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVI---------ALLQRFYAP------LGG------EIILDGVSIDKLQL---- 432 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll---------~~l~~~~~~------~~G------~i~~~g~~~~~~~~---- 432 (1133)
.|+|+||+|++|++++|+||||||||||+ +++.+...+ .+| .+.++..++.....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 69999999999999999999999999997 333333322 223 35556555432210
Q ss_pred ------HHHh-------------------------------hhceEEecCCCCcc-------------------------
Q 041277 433 ------KWLR-------------------------------SQMGLVSQEPALFA------------------------- 450 (1133)
Q Consensus 433 ------~~~r-------------------------------~~i~~v~Q~~~l~~------------------------- 450 (1133)
..+| +..|+++|+..+++
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0111 23577777765543
Q ss_pred --------ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC---C
Q 041277 451 --------TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP---R 519 (1133)
Q Consensus 451 --------~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~---~ 519 (1133)
.|+.|++.|.......++..++ ++.+.-++ ..+|+.+.+|||||||||+|||||+++| +
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~~~~~~~~~~---------L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~ 828 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNIPSIKRTLQV---------LHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRT 828 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTCHHHHHHHHH---------HHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSE
T ss_pred CCHHHHhhCCHHHHHHHHhcchhHHHHHHH---------HHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCCC
Confidence 3566666554322112222233 33332232 3467888999999999999999999876 7
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEE------eCCeEEeecCcchhccccchhh
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV------QDGQVMETGSHDELIQAESGLY 592 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~ 592 (1133)
+|||||||++||+.+++.+++.|+++. +|+|+|+|+|+++.++.||+|++| ++|+|+++|+|+|+++. .+.|
T Consensus 829 LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~-~~sy 907 (916)
T 3pih_A 829 LYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKN-PHSY 907 (916)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSC-TTCH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhC-CchH
Confidence 999999999999999999999999875 589999999999999999999999 89999999999999874 4455
Q ss_pred HHH
Q 041277 593 TSL 595 (1133)
Q Consensus 593 ~~~ 595 (1133)
...
T Consensus 908 t~~ 910 (916)
T 3pih_A 908 TGR 910 (916)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 69
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.95 E-value=1.9e-28 Score=304.12 Aligned_cols=213 Identities=25% Similarity=0.412 Sum_probs=156.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHH-HHhccC-------C---------------
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIAL-LQRFYA-------P--------------- 415 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~-l~~~~~-------~--------------- 415 (1133)
..++++|+++. +|+|+||+|++||++||+|+||||||||++. |.|++. |
T Consensus 501 ~~L~v~~l~~~--------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTRN--------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEET--------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeeec--------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 45999999861 5999999999999999999999999999996 766542 2
Q ss_pred ---Ccc-------EEEECCeecCCCCH----------HHHhhh---------ceEEecC---------------------
Q 041277 416 ---LGG-------EIILDGVSIDKLQL----------KWLRSQ---------MGLVSQE--------------------- 445 (1133)
Q Consensus 416 ---~~G-------~i~~~g~~~~~~~~----------~~~r~~---------i~~v~Q~--------------------- 445 (1133)
.+| .|.+||.++...+. +.+|+. .||.++.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 78999988764332 233332 2332221
Q ss_pred -CCC------------------------cc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHHhCCCcccc-cc
Q 041277 446 -PAL------------------------FA-TSIKENILFGKED-----ASMEEVIEAAKASNAHNFIRQLPQQYDT-QV 493 (1133)
Q Consensus 446 -~~l------------------------~~-~ti~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~ 493 (1133)
-.+ +. .+|.||+.+...+ ....+. ....+.++.+ |+.. ..
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~------~~~~~~L~~~--gL~~~~l 724 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAI------FRALDTLREV--GLGYLRL 724 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHH------HHHHHHHHHT--TCTTSBT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHH------HHHHHHHHHc--CCCcccc
Confidence 000 11 2555555432100 000111 1123345555 3333 35
Q ss_pred cCCCCCCChHHHHHHHHHHHHhhC---CCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEE
Q 041277 494 GERGVQMSGGQKQRIAIARAIIKA---PRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAV 569 (1133)
Q Consensus 494 ~~~g~~LSgGqkqri~iARal~~~---~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~ 569 (1133)
+....+|||||||||+|||+|+++ |++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+..||+|++
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~ 804 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLD 804 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE
Confidence 777789999999999999999996 69999999999999999999999998874 68999999999999977999999
Q ss_pred E------eCCeEEeecCcchhccc
Q 041277 570 V------QDGQVMETGSHDELIQA 587 (1133)
Q Consensus 570 l------~~G~i~~~g~~~~l~~~ 587 (1133)
| ++|+|++.|+++++.+.
T Consensus 805 L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 805 IGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp ECSSSGGGCCSEEEEECHHHHTTC
T ss_pred ECCCCCCCCCEEEEEcCHHHHHhC
Confidence 9 79999999999999863
No 70
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=1.6e-28 Score=303.80 Aligned_cols=208 Identities=23% Similarity=0.357 Sum_probs=155.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHH-hc----cC---CCcc-------------
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQ-RF----YA---PLGG------------- 418 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~-~~----~~---~~~G------------- 418 (1133)
.++++|++. ..|+|+||+|++|+++||+|+||||||||++.|+ |. +. +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 488888852 2699999999999999999999999999999864 22 11 1233
Q ss_pred EEEECCeecCCCC---HH-------HH---------hhhceEEecCCCCc------------------------------
Q 041277 419 EIILDGVSIDKLQ---LK-------WL---------RSQMGLVSQEPALF------------------------------ 449 (1133)
Q Consensus 419 ~i~~~g~~~~~~~---~~-------~~---------r~~i~~v~Q~~~l~------------------------------ 449 (1133)
.|.+||.++.... +. .. .+.+||++|...+.
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4788888875321 11 11 23468888853210
Q ss_pred -------------------------cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccc-cccCCCCCCChH
Q 041277 450 -------------------------ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT-QVGERGVQMSGG 503 (1133)
Q Consensus 450 -------------------------~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgG 503 (1133)
..|+.||+.|... . .++.+ ..+.++.+ |+.. ..+....+||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~--~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-I--PKIKR------KLETLYDV--GLGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-C--HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-c--hhHHH------HHHHHHHc--CCCcccccCchhhCCHH
Confidence 1255566554321 1 11111 12334444 3444 467777899999
Q ss_pred HHHHHHHHHHHhhCC---CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEE------eCC
Q 041277 504 QKQRIAIARAIIKAP---RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV------QDG 573 (1133)
Q Consensus 504 qkqri~iARal~~~~---~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G 573 (1133)
|||||+|||||+++| ++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999998875 589999999999998889999999 799
Q ss_pred eEEeecCcchhcc
Q 041277 574 QVMETGSHDELIQ 586 (1133)
Q Consensus 574 ~i~~~g~~~~l~~ 586 (1133)
+|++.|+++++.+
T Consensus 930 ~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 930 QIVAVGTPEEVAE 942 (972)
T ss_dssp SEEEEESHHHHHT
T ss_pred EEEEecCHHHHHh
Confidence 9999999999976
No 71
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-32 Score=320.47 Aligned_cols=180 Identities=11% Similarity=0.112 Sum_probs=144.1
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc-E-EEECCeecCCCCHHHHhhhceEEecCCCCcc----ccH
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG-E-IILDGVSIDKLQLKWLRSQMGLVSQEPALFA----TSI 453 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G-~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~----~ti 453 (1133)
.++||++++|++++|+||||||||||+++|+|++.|++| + |++|| + .|+.++|+||++.+|. .|+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCeeeeccchhhcccccccch
Confidence 378999999999999999999999999999999999999 9 99998 1 2678999999986543 489
Q ss_pred HHHHhcCCCC-C---CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH--HhhCCCE----EEE
Q 041277 454 KENILFGKED-A---SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA--IIKAPRI----LLL 523 (1133)
Q Consensus 454 ~eni~~~~~~-~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa--l~~~~~i----lll 523 (1133)
+||+ |+... . ..+++.++++.. |++.... ..+||||||||++|||| |+.+|++ |||
T Consensus 200 ~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 200 QLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp TCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 9999 76431 0 111111222222 2333222 56899999999999999 9999999 999
Q ss_pred eC-cccCCChHHHHHHHHHHHHHhCCCeEEEEecCcc------hhhc-CCE-----EEEEe-CCeEEeecCcchhcc
Q 041277 524 DE-ATSALDSESERVVQEALDKAVVGRTTIIIAHRLS------TIRN-ADV-----IAVVQ-DGQVMETGSHDELIQ 586 (1133)
Q Consensus 524 DE-~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~------~~~~-~d~-----i~~l~-~G~i~~~g~~~~l~~ 586 (1133)
|| ||++||+. .+.+.+.+++. ++|+|+|+|+.+ .+.. ||+ |++|+ +|+++ .|+++++.+
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred eCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 99 99999999 66676666554 789999999988 5544 999 99999 99999 999988854
No 72
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=2.1e-28 Score=289.06 Aligned_cols=201 Identities=18% Similarity=0.265 Sum_probs=150.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC--------------------------------------CCccE
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA--------------------------------------PLGGE 419 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~--------------------------------------~~~G~ 419 (1133)
.+++++|++++| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 689999999999 999999999999999999977664 45789
Q ss_pred EEECCeecCCCCHHHHhhh-ceEEecCCCCccccHHHHHhcCCCCCCH--------------------------------
Q 041277 420 IILDGVSIDKLQLKWLRSQ-MGLVSQEPALFATSIKENILFGKEDASM-------------------------------- 466 (1133)
Q Consensus 420 i~~~g~~~~~~~~~~~r~~-i~~v~Q~~~l~~~ti~eni~~~~~~~~~-------------------------------- 466 (1133)
+++||.+++..+..++.+. +++++|++.++..+..++..|-......
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999986666676666 8999999887765554443331111100
Q ss_pred ------------HHHHHHHH------H-------hchHHHHHhC--CC----------------cccc---cccCCCCC-
Q 041277 467 ------------EEVIEAAK------A-------SNAHNFIRQL--PQ----------------QYDT---QVGERGVQ- 499 (1133)
Q Consensus 467 ------------~~~~~~~~------~-------~~~~~~i~~l--~~----------------g~~t---~~~~~g~~- 499 (1133)
+++.+.+. . ..+.+.+..+ |+ |.+. .+..++.+
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 00000000 0 0011122222 11 1111 23444434
Q ss_pred -------CChHHHHHHHHHHHHhhCC--CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEE
Q 041277 500 -------MSGGQKQRIAIARAIIKAP--RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 500 -------LSgGqkqri~iARal~~~~--~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+|+|+|+|||+++.+..||++++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999988899999999999888889999999
Q ss_pred ----eCCeEEeec
Q 041277 571 ----QDGQVMETG 579 (1133)
Q Consensus 571 ----~~G~i~~~g 579 (1133)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999987653
No 73
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=7.2e-28 Score=299.26 Aligned_cols=216 Identities=23% Similarity=0.346 Sum_probs=155.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHH-h----ccC---CCccE-----------
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQ-R----FYA---PLGGE----------- 419 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~-~----~~~---~~~G~----------- 419 (1133)
..++++|++. .+|+|+||+|++|+++||+|+||||||||+++|+ | .+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3588999852 2699999999999999999999999999999854 2 222 23343
Q ss_pred --EEECCeecCCC---CHH-------HH---------hhhceEEecCCCC---------------------c--------
Q 041277 420 --IILDGVSIDKL---QLK-------WL---------RSQMGLVSQEPAL---------------------F-------- 449 (1133)
Q Consensus 420 --i~~~g~~~~~~---~~~-------~~---------r~~i~~v~Q~~~l---------------------~-------- 449 (1133)
|.+|+.++... ++. .+ .+..||++|...+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 55666665321 111 11 2346787775321 0
Q ss_pred --------------------------cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccc-cccCCCCCCCh
Q 041277 450 --------------------------ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT-QVGERGVQMSG 502 (1133)
Q Consensus 450 --------------------------~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSg 502 (1133)
..|+.||+.|... . .++.+ ..+.++.+ |+.. ..+....+|||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~-~--~~~~~------~~~~L~~l--gL~~~~l~~~~~~LSG 866 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP-I--AGVHR------YLRTLVDV--GLGYVRLGQPAPTLSG 866 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT-C--HHHHH------HHHHHHHT--TGGGSBTTCCGGGSCH
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc-c--hHHHH------HHHHHHHc--CCCcccccCccccCCH
Confidence 1244555544321 1 11111 12334444 3443 46777889999
Q ss_pred HHHHHHHHHHHHhhCC---CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEE------eC
Q 041277 503 GQKQRIAIARAIIKAP---RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV------QD 572 (1133)
Q Consensus 503 Gqkqri~iARal~~~~---~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~ 572 (1133)
||||||+|||||+++| ++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+..||+|++| ++
T Consensus 867 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~ 946 (993)
T 2ygr_A 867 GEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGG 946 (993)
T ss_dssp HHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSC
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCC
Confidence 9999999999999875 9999999999999999999999998874 589999999999998889999999 68
Q ss_pred CeEEeecCcchhccccchhhHH
Q 041277 573 GQVMETGSHDELIQAESGLYTS 594 (1133)
Q Consensus 573 G~i~~~g~~~~l~~~~~~~~~~ 594 (1133)
|+|++.|+++++.+. ...|..
T Consensus 947 G~Iv~~G~~~el~~~-~~~~t~ 967 (993)
T 2ygr_A 947 GTVVAQGTPEDVAAV-PASYTG 967 (993)
T ss_dssp SEEEEEECHHHHHHC-TTCHHH
T ss_pred CEEEEecCHHHHHhC-CHHHHH
Confidence 999999999999763 333443
No 74
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.94 E-value=9.8e-27 Score=252.38 Aligned_cols=132 Identities=38% Similarity=0.644 Sum_probs=121.3
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
-+|+++||+|+|+++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.|+.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 479999999999421 3469999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|++|||+|.+|++|++|||.++.+ ..++++++++++.+++++++.++|+||++
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred EEEEeCCCccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhh
Confidence 999999999999999999999854 35678899999999999999999988865
No 75
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=6.9e-26 Score=257.05 Aligned_cols=195 Identities=20% Similarity=0.268 Sum_probs=140.6
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc----------------------------------------------
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY---------------------------------------------- 413 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~---------------------------------------------- 413 (1133)
+++++++.+| +++|+||||||||||+.+|..+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999998432
Q ss_pred ----CCCccEEEECCeecCCCCHHHHhhhceEEecCCCCc-cccHHHHHhcCCCC---------------CCHHHHHHHH
Q 041277 414 ----APLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF-ATSIKENILFGKED---------------ASMEEVIEAA 473 (1133)
Q Consensus 414 ----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eni~~~~~~---------------~~~~~~~~~~ 473 (1133)
.+.+|++++||.+++..+...+...+++.+|+..++ .+++.+|+.....+ ..++++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344678999999875545556666789999988766 78999998753211 0111222221
Q ss_pred HHh------------ch-HHHHHhCCCccccccc------CCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCcccCC
Q 041277 474 KAS------------NA-HNFIRQLPQQYDTQVG------ERGVQMSGGQKQRIAIARAII----KAPRILLLDEATSAL 530 (1133)
Q Consensus 474 ~~~------------~~-~~~i~~l~~g~~t~~~------~~g~~LSgGqkqri~iARal~----~~~~illlDE~ts~l 530 (1133)
... .+ ......++.|+++.++ ....+||||||||++|||||+ .+|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 00 0011234445555432 235689999999999999997 689999999999999
Q ss_pred ChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEE--EEEeCCeE
Q 041277 531 DSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVI--AVVQDGQV 575 (1133)
Q Consensus 531 D~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i--~~l~~G~i 575 (1133)
|+...+.+.+.++++.+++|+|++||+.+....||++ ++|++|+.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 9999999999999887789999999998877789987 88888854
No 76
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.93 E-value=7.2e-26 Score=247.53 Aligned_cols=132 Identities=40% Similarity=0.703 Sum_probs=120.4
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
+.|+++||+|+|+++++.++|+|+||+|++||.+||+||||||||||+++|.|+++| +|+|.+||.|+.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 569999999999743224699999999999999999999999999999999999987 8999999999999888899999
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+||||+|.+|++|++|||.++.+ ..+++++.++++.+++.+++..+|+|+||
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred EEEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 999999999999999999999754 34678899999999999999999998874
No 77
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.93 E-value=1.1e-25 Score=247.40 Aligned_cols=134 Identities=43% Similarity=0.776 Sum_probs=120.2
Q ss_pred cccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh
Q 041277 999 TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078 (1133)
Q Consensus 999 ~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~ 1078 (1133)
.+.|+++||+|+|+++++.++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.|+.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 46799999999996422346999999999999999999999999999999999999999999999999999888888999
Q ss_pred cccccccccccccccHHHHhccCCCCCCCH-HHHHHHHHHcchHHHHhhcccccCC
Q 041277 1079 HIALVSQEPTLFAGTIRENIAYGASDEIDE-SEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~gTIreNI~~g~~~~~sd-eei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+|+||||+|.+|++|++|||.++.+. .++ +++.++++.++++++++.+|+|+++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~ 148 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTR-TPTMEEITAVAMESGAHDFISGFPQGYDT 148 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSS-CCCHHHHHHHHHHHTCHHHHHHSTTGGGS
T ss_pred cEEEEecCCccccccHHHHHhhhccc-CChHHHHHHHHHHHhHHHHHHhhhcchhh
Confidence 99999999999999999999998542 333 6788899999999999999988764
No 78
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.93 E-value=3.7e-26 Score=247.80 Aligned_cols=129 Identities=34% Similarity=0.631 Sum_probs=118.9
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 345999999999999999999999999999999999999999999999999999988888999999
Q ss_pred ccccccccccccHHHHhccC-CCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1082 LVSQEPTLFAGTIRENIAYG-ASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1082 iV~Qdp~LF~gTIreNI~~g-~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+|||+|.+|.+|++|||.++ .+ ..++++++++++.++++++++++|+|++|
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEG-DYTDEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTS-CSCHHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred EEcCCCccccccHHHHHhhhccC-CCCHHHHHHHHHHhChHHHHHhCccchhc
Confidence 99999999999999999997 33 35678899999999999999999988864
No 79
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=2.7e-27 Score=249.41 Aligned_cols=157 Identities=12% Similarity=0.161 Sum_probs=101.4
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+++++|||||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 489995 89999999999999999999999999 99999994 333321 2223567899999997 666
Q ss_pred H-hcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHH
Q 041277 457 I-LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESE 535 (1133)
Q Consensus 457 i-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~ 535 (1133)
+ .++.+. .+.+........+.+.++. | | |||||++|||||+.+|++|||||||++ ++
T Consensus 79 l~~~~~~~--~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 79 IDPYLRPL--HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp -CTTTHHH--HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHHH--HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 6 342100 0000000000112222221 1 2 999999999999999999999999999 88
Q ss_pred HHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 536 RVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 536 ~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
+.+.+.|+++.+|+|+| +||+++.+. ++...++|.
T Consensus 137 ~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~ 171 (208)
T 3b85_A 137 AQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGL 171 (208)
T ss_dssp HHHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcH
Confidence 88888888775578999 999987654 333445553
No 80
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=8.4e-26 Score=282.73 Aligned_cols=166 Identities=22% Similarity=0.354 Sum_probs=117.3
Q ss_pred HHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCC-CCHHHHHHHHHHhchHHHHH
Q 041277 405 VIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKED-ASMEEVIEAAKASNAHNFIR 483 (1133)
Q Consensus 405 ll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~~~~~~i~ 483 (1133)
+..|.-+.+.|..|+|.++|+++.++....+.+.++++.+ +.+...+ ....+..+..+. ..+++.
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~------------~~l~~~~~~~~~~~~~~~~~--~~~~L~ 449 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKN------------LNLTEREREIVGELLKEIEK--RLEFLV 449 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHS------------CCCCTTTTTTHHHHHHHHHH--HHHHHH
T ss_pred chhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHh------------ccCcHHHHHHHHhhHHHHHH--HHHHHH
Confidence 3445556788999999999998865433223333333211 1111111 111112111111 123444
Q ss_pred hCCCccccc-ccCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcc
Q 041277 484 QLPQQYDTQ-VGERGVQMSGGQKQRIAIARAIIKAPR--ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLS 559 (1133)
Q Consensus 484 ~l~~g~~t~-~~~~g~~LSgGqkqri~iARal~~~~~--illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~ 559 (1133)
.+ |++.. .+....+|||||||||+|||||.++|+ +|||||||++||+...+.+.+.|+++. +|+|+|+|+|+++
T Consensus 450 ~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~ 527 (916)
T 3pih_A 450 DV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEE 527 (916)
T ss_dssp TT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHH
T ss_pred Hc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44 34322 456667999999999999999999887 999999999999999999999999875 4899999999999
Q ss_pred hhhcCCEEEEE------eCCeEEeecCcchhcc
Q 041277 560 TIRNADVIAVV------QDGQVMETGSHDELIQ 586 (1133)
Q Consensus 560 ~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 586 (1133)
.+..||+|++| ++|+++.+|+++++++
T Consensus 528 ~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 528 VIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp HHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred HHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99889999999 8999999998887753
No 81
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.91 E-value=1.6e-24 Score=269.12 Aligned_cols=179 Identities=20% Similarity=0.269 Sum_probs=126.6
Q ss_pred CCCCcHHHHHHHHHhc---------cCCCccEEEECCeecCC---CCHHHHhhhceEEecCCCCccccHHHHHhcCCCCC
Q 041277 397 GSGSGKSTVIALLQRF---------YAPLGGEIILDGVSIDK---LQLKWLRSQMGLVSQEPALFATSIKENILFGKEDA 464 (1133)
Q Consensus 397 ~sGsGKSTll~~l~~~---------~~~~~G~i~~~g~~~~~---~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~ 464 (1133)
.+..||+++.+.+... |.|..|+|.++|+++.+ ++..++..-+.-++|++..+. + +...+...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~~-- 344 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRPE-- 344 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCSS--
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcchh--
Confidence 3556788777766553 45678999999999987 455554444444455443221 1 11222211
Q ss_pred CHHHHH-----HHHHHhchHHHHHhCCCccccc-ccCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCcccCCChHHHH
Q 041277 465 SMEEVI-----EAAKASNAHNFIRQLPQQYDTQ-VGERGVQMSGGQKQRIAIARAIIKAP--RILLLDEATSALDSESER 536 (1133)
Q Consensus 465 ~~~~~~-----~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGqkqri~iARal~~~~--~illlDE~ts~lD~~~~~ 536 (1133)
..++. +..+.. +.+..+ |++.. .+....+|||||||||+|||||.++| ++|||||||++||++..+
T Consensus 345 -~~~i~~~i~~ei~~rl---~~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~ 418 (842)
T 2vf7_A 345 -QAIALQRMAADLVKRL---DVLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTE 418 (842)
T ss_dssp -HHHHHHHHHHHHHHHH---HHHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred -hHHHHHHHHHHHHHHH---HHHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHH
Confidence 11111 111111 134444 34332 46667799999999999999999999 599999999999999999
Q ss_pred HHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEE------eCCeEEeecCcchhcc
Q 041277 537 VVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV------QDGQVMETGSHDELIQ 586 (1133)
Q Consensus 537 ~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 586 (1133)
.+.+.++++. .|.|+|+|+||++.+..||+|++| ++|+++..|+++++.+
T Consensus 419 ~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 419 ALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 9999998875 489999999999988889999999 7899999888877643
No 82
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.9e-24 Score=247.64 Aligned_cols=132 Identities=26% Similarity=0.453 Sum_probs=120.7
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHh
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
..+.|+++||+++|+.. +.++|+||||+|++||.+||+||||||||||+++|.|+++ ++|+|++||.|+.+++.+.+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 35789999999999632 3469999999999999999999999999999999999998 899999999999999999999
Q ss_pred hcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1078 RHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++|++|||++.||++|++||+.+.. ...+++++++++.+++++++.+.|.+|+|
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhccccccc
Confidence 9999999999999999999998643 35688999999999999999999998654
No 83
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.90 E-value=2.6e-23 Score=257.43 Aligned_cols=151 Identities=22% Similarity=0.359 Sum_probs=111.0
Q ss_pred cCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCC-CCCHH--H-----HHHHHHHhchHHHHHh
Q 041277 413 YAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE-DASME--E-----VIEAAKASNAHNFIRQ 484 (1133)
Q Consensus 413 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~--~-----~~~~~~~~~~~~~i~~ 484 (1133)
+.|....|.++|++|.+ +...||.|++.|... ..+.+ . +.+..++. +++..
T Consensus 432 l~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~ 490 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQN 490 (972)
T ss_dssp BCTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHH
T ss_pred cCHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhh
Confidence 45566677777766532 234578888777321 11221 1 11222221 23343
Q ss_pred CCCccccc-ccCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcch
Q 041277 485 LPQQYDTQ-VGERGVQMSGGQKQRIAIARAIIKAP--RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST 560 (1133)
Q Consensus 485 l~~g~~t~-~~~~g~~LSgGqkqri~iARal~~~~--~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~ 560 (1133)
+ |++.. ......+|||||||||+||+||..+| ++|||||||++||+...+.+.+.|+++. .|.|+|+|+||++.
T Consensus 491 v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~ 568 (972)
T 2r6f_A 491 V--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 568 (972)
T ss_dssp H--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred C--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 3 33322 45566799999999999999999985 9999999999999999999999999876 58999999999999
Q ss_pred hhcCCEEEEE------eCCeEEeecCcchhcc
Q 041277 561 IRNADVIAVV------QDGQVMETGSHDELIQ 586 (1133)
Q Consensus 561 ~~~~d~i~~l------~~G~i~~~g~~~~l~~ 586 (1133)
+..||+|++| ++|+++.+|+++++.+
T Consensus 569 i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 569 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp HHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred HHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 9889999999 7899999998877653
No 84
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=4.6e-25 Score=226.29 Aligned_cols=149 Identities=18% Similarity=0.219 Sum_probs=107.0
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCC--CccccHHHHHh
Q 041277 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPA--LFATSIKENIL 458 (1133)
Q Consensus 381 ~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--l~~~ti~eni~ 458 (1133)
|+||++++||+++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.+++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 21112 222333 67788763 22333333322
Q ss_pred cCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHH----
Q 041277 459 FGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES---- 534 (1133)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~---- 534 (1133)
. .. ...+..|+.+.+... ...|||||||++||||+..+|++++|||||++||+.+
T Consensus 64 ~------------~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y------------IV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H------------HH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H------------HH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 10 011123454444433 4569999999999999999999999999999999994
Q ss_pred ------------HHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEE
Q 041277 535 ------------ERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVI 567 (1133)
Q Consensus 535 ------------~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i 567 (1133)
.+.+.+.++++. +|.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 477777776653 589999999999998877654
No 85
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=2.7e-23 Score=238.96 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=76.2
Q ss_pred CCCCCCChHHHHHHHHHHHHh------hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEE
Q 041277 495 ERGVQMSGGQKQRIAIARAII------KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVI 567 (1133)
Q Consensus 495 ~~g~~LSgGqkqri~iARal~------~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i 567 (1133)
....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++....||++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 455689999999999999999 7999999999999999999999999998875 589999999999987789999
Q ss_pred EEEeCCeEEe
Q 041277 568 AVVQDGQVME 577 (1133)
Q Consensus 568 ~~l~~G~i~~ 577 (1133)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 86
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=6.7e-25 Score=225.70 Aligned_cols=147 Identities=13% Similarity=0.201 Sum_probs=109.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHH
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVI 470 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~ 470 (1133)
.++|+||||||||||+++|+|++. |.++|.+..+......++++||++|++ +..+|+. +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh--------
Confidence 689999999999999999999995 567776654433224567899999987 2223321 100
Q ss_pred HHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH-----HhhCCCEEEEeC--cccCCChHHHHHHHHHHH
Q 041277 471 EAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA-----IIKAPRILLLDE--ATSALDSESERVVQEALD 543 (1133)
Q Consensus 471 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa-----l~~~~~illlDE--~ts~lD~~~~~~i~~~l~ 543 (1133)
..+ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.++
T Consensus 63 -------------~~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 63 -------------FFT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp -------------TCC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred -------------cCC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 001 1134666778999999999999996 999999999999 999999999999998887
Q ss_pred HHhCCCeEEEEec---Ccchhhc-CCEEEEEeCCeEEe
Q 041277 544 KAVVGRTTIIIAH---RLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 544 ~~~~~~t~i~itH---~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
+ .+.|+|+++| +.+.+.. ||+ .+|++++
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 4677899986 6667765 777 5677765
No 87
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.89 E-value=7.8e-27 Score=249.34 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=119.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhhceEEecCCCCccc-----
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQMGLVSQEPALFAT----- 451 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v~Q~~~l~~~----- 451 (1133)
.|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|++|++.+|..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 699999999999999999999999999999999999 6 99999 887754432 2345789999999877643
Q ss_pred ------cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH-----HHHHhhCCCE
Q 041277 452 ------SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI-----ARAIIKAPRI 520 (1133)
Q Consensus 452 ------ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i-----ARal~~~~~i 520 (1133)
++.+| .+|.+ .+++.++++.. ....++ .+||||||||++| ||+++.+|++
T Consensus 88 ~~l~~~~~~~~-~~g~~---~~~i~~~l~~~------------~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGTL---KSEYDKAKEQN------------KICLFE---MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp CEEEEEEETTE-EEEEE---HHHHHHHHHTT------------CEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred chhhhhhcccc-cCCCc---HHHHHHHHhCC------------CcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 22333 22322 33444443321 111222 5799999999999 8999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
++|||||+++|.+++..+++.+.+..+++| ++| +..||.|+++++
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999988776667 677 567999988764
No 88
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.89 E-value=6.3e-27 Score=264.88 Aligned_cols=206 Identities=17% Similarity=0.150 Sum_probs=141.3
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccc-ccccccEE---------
Q 041277 294 GAQGGTVFAVGASIAVGGLALGAGLP-NLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEIL-ENVLGEVE--------- 362 (1133)
Q Consensus 294 ~~t~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~-~~~~~~i~--------- 362 (1133)
.+|.+.+.+++.++.....+ .+.. ..+.+..+..+.+|+.++++.+.. . ........ ....+.++
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~-~-~~~~~~~ir~~~~~~i~l~~l~~~g~ 150 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTV-N-DETISISIRIPSKTTYPHSFFEEQGF 150 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSS-S-TTCCEEEEECCCCCCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCcc-C-CCCceEEEeCCCCCCCCHHHHHhCCC
Confidence 57888877776555443222 1111 111222233455677777653321 1 11000000 01122344
Q ss_pred EEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEE
Q 041277 363 FKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLV 442 (1133)
Q Consensus 363 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 442 (1133)
|++++| | .++++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. +....+++.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEE
Confidence 566666 5 1389999999999999999999999999999999999999999999998652 2222234445554
Q ss_pred ecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 041277 443 SQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILL 522 (1133)
Q Consensus 443 ~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ill 522 (1133)
+ | |||+||++|||||..+|++++
T Consensus 223 ~--------------------------------------------------g-------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 223 F--------------------------------------------------G-------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp C--------------------------------------------------B-------TTBCHHHHHHHHTTSCCSEEE
T ss_pred e--------------------------------------------------C-------CChhHHHHHHHHhhhCCCEEE
Confidence 3 0 899999999999999999999
Q ss_pred EeCcccCCChHHHHHHHHHHHHHhCCC-eEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 523 LDEATSALDSESERVVQEALDKAVVGR-TTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 523 lDE~ts~lD~~~~~~i~~~l~~~~~~~-t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
|||||+. .+.+.++.+..|+ |+|+++|+.+....|||+++|++|+.
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 9999982 2455666665554 79999999997778999999988753
No 89
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.88 E-value=1.2e-21 Score=243.69 Aligned_cols=133 Identities=27% Similarity=0.405 Sum_probs=99.6
Q ss_pred CccccHHHHHhcCCC-CCCHHH------H-HHHHHHhchHHHHHhCCCccccc-ccCCCCCCChHHHHHHHHHHHHhhC-
Q 041277 448 LFATSIKENILFGKE-DASMEE------V-IEAAKASNAHNFIRQLPQQYDTQ-VGERGVQMSGGQKQRIAIARAIIKA- 517 (1133)
Q Consensus 448 l~~~ti~eni~~~~~-~~~~~~------~-~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGqkqri~iARal~~~- 517 (1133)
++..||.|++.|... ..+.++ + .+..+. + +++..+ |++.. ......+|||||||||+||+||..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~R--l-~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSR--L-GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHH--H-HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHH--H-HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhCC
Confidence 456799999998432 122211 1 111111 1 233333 33322 4556679999999999999999999
Q ss_pred -CCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEE------eCCeEEeecCcchhc
Q 041277 518 -PRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV------QDGQVMETGSHDELI 585 (1133)
Q Consensus 518 -~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~ 585 (1133)
|++|||||||++||+...+.+.+.|+++. .|+|+|+|+||++.+..||+|++| ++|+++..|+++++.
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 58999999999999999999999998875 589999999999999889999999 678888877766554
No 90
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.87 E-value=2.9e-23 Score=223.54 Aligned_cols=122 Identities=26% Similarity=0.389 Sum_probs=103.2
Q ss_pred EEEEeEEEECCCCC-CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHH----
Q 041277 1002 IELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSL---- 1076 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~L---- 1076 (1133)
|+++||+|+|+.++ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2469999999999999999999999999999999999999999999999999999998765
Q ss_pred hhcccccccccccccc-cHHHHhccCCC----CCCC----HHHHHHHHHHcchHHH
Q 041277 1077 RRHIALVSQEPTLFAG-TIRENIAYGAS----DEID----ESEIVEAAKAANAHDF 1123 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF~g-TIreNI~~g~~----~~~s----deei~~Al~~a~l~df 1123 (1133)
|++|++|||+|.+|.. |++||+.++.. ...+ .+++.++++.+++.+.
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 137 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh
Confidence 4579999999999987 99999976410 0112 3457788888888664
No 91
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.87 E-value=2.2e-22 Score=215.93 Aligned_cols=117 Identities=27% Similarity=0.440 Sum_probs=104.1
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
+.|+++||+|+|+++ +.++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 569999999999632 34699999999999999999999999999999999999999999999998 4
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~d 1132 (1133)
|+||||+|.+|++|++|||.++.. ..+....++++.+++.+++..+|.+++
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~ 121 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDN 121 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC--CCHHHHHHHHHHTTCHHHHTTSTTGGG
T ss_pred EEEEecCCcccCCCHHHHhhccCC--cChHHHHHHHHHhCcHHHHHhCccccc
Confidence 999999999999999999999743 345567778888999999999987764
No 92
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.86 E-value=1.1e-22 Score=223.12 Aligned_cols=128 Identities=22% Similarity=0.461 Sum_probs=107.6
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC--CCChhHHhh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR--SYHLRSLRR 1078 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~--~i~l~~LR~ 1078 (1133)
-|+++||+|+|++ ..++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 4999999999963 235999999999999999999999999999999999999999999999999994 344567899
Q ss_pred ccccccccc--ccccccHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhcccc
Q 041277 1079 HIALVSQEP--TLFAGTIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1079 ~isiV~Qdp--~LF~gTIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+||+|||+| .+|..|++|||.++.. ...+ .+.+.++++..++.++..+.|..
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHC 143 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCccc
Confidence 999999998 5889999999987631 1122 34578889999998876665544
No 93
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.86 E-value=1.3e-24 Score=254.08 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=155.0
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe---ecCCCC----
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV---SIDKLQ---- 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~---~~~~~~---- 431 (1133)
+.++++|+++.|+. ...+|+++ |++++||+++|+||||||||||+++|+|+++|+.|.|.++|+ ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 46889999999963 23599999 999999999999999999999999999999999999999998 554431
Q ss_pred -HHHHhhhceEEecC-CCCc-cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 432 -LKWLRSQMGLVSQE-PALF-ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 432 -~~~~r~~i~~v~Q~-~~l~-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
...+++.++||+|+ ..++ ..|+.+|+.+.. +.... +... ....+ +...+||+|| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~-~~~~-----------v~~~l-d~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD-RGQH-----------VLLIM-DSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT-TTCE-----------EEEEE-ECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh-CCCC-----------HHHHH-HhHHHHHHHH-HHH
Confidence 34577889999995 3334 559999987631 11110 0000 00111 2245799999 999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-----CC-----eEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV-----GR-----TTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-----~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
+|| +.+|++ |++||+.+...+.+.+.+..+ |+ |++++||+++ ...||++++|.+|+|+..
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 999 899998 999999999999999988744 54 9999999999 566999999999999999
Q ss_pred cCcchhcc
Q 041277 579 GSHDELIQ 586 (1133)
Q Consensus 579 g~~~~l~~ 586 (1133)
|+++++..
T Consensus 337 ~~~~~~~~ 344 (438)
T 2dpy_A 337 RRLAEAGH 344 (438)
T ss_dssp HHHHHTTC
T ss_pred CCHHHccC
Confidence 99887753
No 94
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.86 E-value=1.4e-24 Score=250.15 Aligned_cols=166 Identities=19% Similarity=0.153 Sum_probs=129.9
Q ss_pred ccccceeEEeeCCC--------------------EEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHh
Q 041277 377 IIFKDFCLTIPAGK--------------------TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~--------------------~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r 436 (1133)
.+|+++||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 48999999999999 99999999999999999999999999999999997653 1
Q ss_pred hhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH--HHHHHHHHHHH
Q 041277 437 SQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG--QKQRIAIARAI 514 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG--qkqri~iARal 514 (1133)
.++++|++...+.|+.||+.++.+.. ++.+.++..++.+ ++..+ .|||| ||||++||||+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~~~---~~~~~L~~~~L~~--------~~~~~-----~lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGSTNF---PPDTYLEKMKFYE--------YDFFI-----IISATRFKKNDIDIAKAI 171 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGSSC---CHHHHHHHTTGGG--------CSEEE-----EEESSCCCHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccchHH---HHHHHHHHcCCCc--------cCCeE-----EeCCCCccHHHHHHHHHH
Confidence 28899997544669999988765432 2344444444321 12221 28999 99999999999
Q ss_pred hh----------CCCEEEEeCcccCCChHHHHHHHHHHHHHh------C----CCeEEEEecCcch--hhc-CCEE
Q 041277 515 IK----------APRILLLDEATSALDSESERVVQEALDKAV------V----GRTTIIIAHRLST--IRN-ADVI 567 (1133)
Q Consensus 515 ~~----------~~~illlDE~ts~lD~~~~~~i~~~l~~~~------~----~~t~i~itH~~~~--~~~-~d~i 567 (1133)
.+ +|++++|||||++||+.+++.+.+.+++.. . .+++++.||.++. ++. ||+|
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99 999999999999999999998888887652 1 2567788998876 554 6665
No 95
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.86 E-value=3.7e-22 Score=215.17 Aligned_cols=116 Identities=27% Similarity=0.426 Sum_probs=102.0
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+|+|+.+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999631 34699999999999999999999999999999999999999999999999 49
Q ss_pred cccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccC
Q 041277 1081 ALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132 (1133)
Q Consensus 1081 siV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~d 1132 (1133)
+||||+|.+|+.|++|||.++.. .++++..++++.+++.+.+..+|.|++
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~ 118 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ--LEEPYYRSVIQACALLPDLEILPSGDR 118 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC--CCTTHHHHHHHHTTCHHHHTTSTTGGG
T ss_pred EEEcCCCcCCCcCHHHHhhCccc--cCHHHHHHHHHHHhhHHHHHhcccccc
Confidence 99999999999999999999753 234466778888888888888887765
No 96
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.86 E-value=2.1e-22 Score=227.16 Aligned_cols=132 Identities=23% Similarity=0.369 Sum_probs=111.4
Q ss_pred ccEEEEeEEEECCCCC-CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHH--
Q 041277 1000 GNIELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSL-- 1076 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~L-- 1076 (1133)
.-|+++||+++|+.+. ..++|+||||+|++||.+||+||||||||||+++|.|++.|++|+|++||.|+..++...+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996432 2468999999999999999999999999999999999999999999999999999987654
Q ss_pred -hhcccccccccccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1077 -RRHIALVSQEPTLFAG-TIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1077 -R~~isiV~Qdp~LF~g-TIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|++||+|||+|.||.. |++||+.++.. ...+ .+.+.++++.+++.++..+.|..|
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~L 164 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL 164 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTS
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 7899999999999876 99999987521 1112 346788999999988877666543
No 97
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.86 E-value=4.8e-22 Score=217.61 Aligned_cols=126 Identities=21% Similarity=0.411 Sum_probs=111.1
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
-|+++||+++|+ +.++|+||||+|++||.+|||||||||||||+++|.|+++|++|+|.+||.|+.+.+.+.+|+.+
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 599999999995 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc-ccccHHHHhccCCC---CCCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1081 ALVSQEPTL-FAGTIRENIAYGAS---DEIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1081 siV~Qdp~L-F~gTIreNI~~g~~---~~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
++|||++.+ |..|++||+.++.. ....++++.++++..++.++..+.|.
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYR 140 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGG
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcc
Confidence 999999987 77899999998742 12235678899999998776655554
No 98
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=4e-22 Score=215.50 Aligned_cols=125 Identities=25% Similarity=0.435 Sum_probs=103.1
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHH-hhc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSL-RRH 1079 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~L-R~~ 1079 (1133)
-|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 459999999999999999999999999999999999999999999999999998887765 456
Q ss_pred ccccccccccccc-cHHHHhccCC-CC-CCC--HHHHHHHHHHc-chHHHHhhcc
Q 041277 1080 IALVSQEPTLFAG-TIRENIAYGA-SD-EID--ESEIVEAAKAA-NAHDFIAGLN 1128 (1133)
Q Consensus 1080 isiV~Qdp~LF~g-TIreNI~~g~-~~-~~s--deei~~Al~~a-~l~dfI~~LP 1128 (1133)
|+||||+|.+|.+ |++||+.++. +. ... ++.+.++++.. ++.++..+.|
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ 137 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBS
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCCh
Confidence 9999999999987 9999999863 11 111 23455666666 3766554444
No 99
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=4e-22 Score=216.73 Aligned_cols=126 Identities=21% Similarity=0.333 Sum_probs=108.1
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
+.|+++||+++|+ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+ ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 5799999999995 3469999999999999999999999999999999999999999999999999976 56778999
Q ss_pred ccccccccccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccc
Q 041277 1080 IALVSQEPTLFAG-TIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1080 isiV~Qdp~LF~g-TIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~ 1129 (1133)
|++|||+|.+|.+ |++||+.++.. ...+ ++++.++++..++.++..+.|.
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 145 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS 145 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGG
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChh
Confidence 9999999999987 99999987421 0112 2468889999999887666554
No 100
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.85 E-value=3.9e-22 Score=217.57 Aligned_cols=127 Identities=22% Similarity=0.404 Sum_probs=107.6
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC--CCChhHHhh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR--SYHLRSLRR 1078 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~--~i~l~~LR~ 1078 (1133)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 5999999999952 35999999999999999999999999999999999999999999999999985 345567899
Q ss_pred cccccccccccccc-cHHHHhccCC--CCCCC----HHHHHHHHHHcchHHHHhhcccc
Q 041277 1079 HIALVSQEPTLFAG-TIRENIAYGA--SDEID----ESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~g-TIreNI~~g~--~~~~s----deei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+|+||||+|.+|.. |++||+.++. ....+ ++++.++++..++.++..+.|..
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 159 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDS 159 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhh
Confidence 99999999999987 9999998752 11112 35678899999998876665543
No 101
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.85 E-value=7e-22 Score=216.86 Aligned_cols=127 Identities=25% Similarity=0.414 Sum_probs=108.1
Q ss_pred EEEEeEEEECCCCCC--CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1002 IELQNVHFAYPARPD--VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
|+++||+++|+.+.. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 799999999962111 4699999999999999999999999999999999999999999999999998642 78899
Q ss_pred cccccccc--ccccccHHHHhccCCC----CCCCHHHHHHHHHHcchH--HHHhhccccc
Q 041277 1080 IALVSQEP--TLFAGTIRENIAYGAS----DEIDESEIVEAAKAANAH--DFIAGLNEGY 1131 (1133)
Q Consensus 1080 isiV~Qdp--~LF~gTIreNI~~g~~----~~~sdeei~~Al~~a~l~--dfI~~LP~G~ 1131 (1133)
|++|||+| .+|+.|++||+.++.. ....++++.++++.+++. ++..+.|..|
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~L 139 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFL 139 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGS
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhC
Confidence 99999997 5788999999998632 122356789999999998 8887776543
No 102
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.85 E-value=4.6e-22 Score=212.67 Aligned_cols=126 Identities=21% Similarity=0.271 Sum_probs=106.0
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---Hh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---LR 1077 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---LR 1077 (1133)
-|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999953 46999999999999999999999999999999999999999999999999998887653 44
Q ss_pred -hccccccccccccc-ccHHHHhccCCC--C---CCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1078 -RHIALVSQEPTLFA-GTIRENIAYGAS--D---EIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1078 -~~isiV~Qdp~LF~-gTIreNI~~g~~--~---~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
++|++|||+|.+|. .|++||+.++.. . ...++++.++++..++.++..+.|.
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 78999999999987 499999987421 1 1123568889999998877665554
No 103
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.85 E-value=5.5e-22 Score=209.44 Aligned_cols=119 Identities=21% Similarity=0.429 Sum_probs=103.3
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+++|+ + ++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++. .+|++|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 699999999995 3 5999999999999999999999999999999999999999999999999986 368999
Q ss_pred cccccccccccc-cHHHHhccCCC--C-CCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGAS--D-EIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~--~-~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
+||||+|.+|.+ |++||+.++.. . ...++++.++++..++.++ .+.|.
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~ 132 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLG 132 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGG
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChh
Confidence 999999999987 99999987521 1 1236789999999998766 54443
No 104
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.85 E-value=6.3e-22 Score=218.02 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=106.6
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC--CCChhHHhh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR--SYHLRSLRR 1078 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~--~i~l~~LR~ 1078 (1133)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999953 35999999999999999999999999999999999999999999999999998 778888999
Q ss_pred ccccccccccc-ccc--cHHHHhccCCCC------CCC---HHHHHHHHHHcchHHHHhhccc
Q 041277 1079 HIALVSQEPTL-FAG--TIRENIAYGASD------EID---ESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1079 ~isiV~Qdp~L-F~g--TIreNI~~g~~~------~~s---deei~~Al~~a~l~dfI~~LP~ 1129 (1133)
+|++|||+|.+ |.. |++|||.++... ... .+++.++++..++.++..+.|.
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh
Confidence 99999999975 555 999999986311 012 3467888999999877665544
No 105
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.85 E-value=1.4e-21 Score=211.60 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=107.9
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++ ++|+|+||+|++||.+||+||||||||||+++|.|+++|+ |+|.+||.|+.+.+...+|++++
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 3899999999999999999999999999999999999999 99999999999989999999999
Q ss_pred ccccccccccc-cHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1082 LVSQEPTLFAG-TIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1082 iV~Qdp~LF~g-TIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
||||+|.+|.+ |++||+.++.....+++++.++++..++.++..+.|..
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 126 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ 126 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhh
Confidence 99999998875 99999998742122477899999999998877655543
No 106
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.84 E-value=1.5e-21 Score=213.22 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=106.4
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh-hHHhhc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL-RSLRRH 1079 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l-~~LR~~ 1079 (1133)
-|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+. +.+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4999999999953 359999999999999999999999999999999999999999999999999987765 346889
Q ss_pred cccccccccccc-ccHHHHhccCCCC---C-----------CC----HHHHHHHHHHcchHHHHhhccc
Q 041277 1080 IALVSQEPTLFA-GTIRENIAYGASD---E-----------ID----ESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1080 isiV~Qdp~LF~-gTIreNI~~g~~~---~-----------~s----deei~~Al~~a~l~dfI~~LP~ 1129 (1133)
|++|||+|.+|. .|++||+.++... . .+ .+++.++++..++.++..+.|.
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch
Confidence 999999999986 5999999886311 1 11 3457888999998877665554
No 107
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.84 E-value=7.8e-23 Score=227.95 Aligned_cols=176 Identities=18% Similarity=0.244 Sum_probs=126.5
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC----HHHH--hhhceEEecCCC-Cccc
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ----LKWL--RSQMGLVSQEPA-LFAT 451 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~~~ 451 (1133)
++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |.+++|++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688999999999999999999999999999999999999999999886542 1233 457999999998 7654
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCccc
Q 041277 452 -SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR--ILLLDEATS 528 (1133)
Q Consensus 452 -ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~--illlDE~ts 528 (1133)
|++||+.++.....+. ..++.++ ..........+|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d~---~lldt~g-----------l~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDV---VLCDTSG-----------RLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCSE---EEECCCC-----------CSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCcc---hHHhcCC-----------CCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 9999998642110000 0111111 1111111223588 999999999999999 99999 999
Q ss_pred CCChHHHHHHHHHHHHHhCCCeEEEEec---------Ccchhhc-CCEEEEEeCCeEE
Q 041277 529 ALDSESERVVQEALDKAVVGRTTIIIAH---------RLSTIRN-ADVIAVVQDGQVM 576 (1133)
Q Consensus 529 ~lD~~~~~~i~~~l~~~~~~~t~i~itH---------~~~~~~~-~d~i~~l~~G~i~ 576 (1133)
++|+.++. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99998652 11211 24899999999 3344433 7899999999753
No 108
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.84 E-value=1.1e-21 Score=221.21 Aligned_cols=128 Identities=20% Similarity=0.414 Sum_probs=108.3
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC--CChhHHhh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS--YHLRSLRR 1078 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~--i~l~~LR~ 1078 (1133)
.|+++||+++|+ +.++|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+.+ .+....|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 489999999995 3469999999999999999999999999999999999999999999999999933 23445678
Q ss_pred cccccccccccccc-cHHHHhccCCCC-----CCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1079 HIALVSQEPTLFAG-TIRENIAYGASD-----EIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~g-TIreNI~~g~~~-----~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+||+|||++.||.. |++|||.|+... ...++++.++++.+++.++..+.|..|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~L 139 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHEL 139 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGS
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 99999999999964 999999997421 112456889999999998877776544
No 109
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.84 E-value=1.8e-21 Score=213.02 Aligned_cols=127 Identities=21% Similarity=0.344 Sum_probs=106.7
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC----------C
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR----------S 1070 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~----------~ 1070 (1133)
-|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+. +
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999953 45999999999999999999999999999999999999999999999999986 2
Q ss_pred CCh---hHHhhcccccccccccccc-cHHHHhccCC--CCCCC----HHHHHHHHHHcchHHH-Hhhcccc
Q 041277 1071 YHL---RSLRRHIALVSQEPTLFAG-TIRENIAYGA--SDEID----ESEIVEAAKAANAHDF-IAGLNEG 1130 (1133)
Q Consensus 1071 i~l---~~LR~~isiV~Qdp~LF~g-TIreNI~~g~--~~~~s----deei~~Al~~a~l~df-I~~LP~G 1130 (1133)
++. ..+|++|++|||++.+|.. |++||+.++. ....+ ++++.++++..++.++ ..+.|..
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 153 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH 153 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCccc
Confidence 443 3568899999999999987 9999998742 11112 3568889999999988 6665543
No 110
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.84 E-value=1.4e-21 Score=221.84 Aligned_cols=126 Identities=22% Similarity=0.408 Sum_probs=108.9
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+++|+ +..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+.. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 489999999995 34699999999999999999999999999999999999999999999999999988876 4789
Q ss_pred cccccccccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|+|++.||.. |++|||.||.. ...+ ++++.++++..++.++..+.|..|
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~L 134 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL 134 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGS
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHC
Confidence 999999999975 99999998621 1122 356888999999998877777644
No 111
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.84 E-value=1.9e-20 Score=212.64 Aligned_cols=81 Identities=19% Similarity=0.241 Sum_probs=75.3
Q ss_pred CCChHHHHHHHHHHHHh---------hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEE
Q 041277 499 QMSGGQKQRIAIARAII---------KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAV 569 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~---------~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~ 569 (1133)
.||||||||++|||+|+ .+|+|||||||||+||+..++.+.+.+.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998764 79999999 444 8999999
Q ss_pred EeCCeEEeecCcchh
Q 041277 570 VQDGQVMETGSHDEL 584 (1133)
Q Consensus 570 l~~G~i~~~g~~~~l 584 (1133)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999887
No 112
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.83 E-value=2.9e-21 Score=219.02 Aligned_cols=126 Identities=27% Similarity=0.451 Sum_probs=108.0
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999952 3589999999999999999999999999999999999999999999999999887764 5789
Q ss_pred cccccccccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|||++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.|..|
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 134 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQL 134 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGS
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhC
Confidence 999999999975 99999998621 0112 356888999999988877766543
No 113
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.83 E-value=3.9e-21 Score=217.17 Aligned_cols=128 Identities=28% Similarity=0.472 Sum_probs=108.9
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
..|+++||+++|++ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 46999999999931 2358999999999999999999999999999999999999999999999999987654 4789
Q ss_pred ccccccccccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1080 IALVSQEPTLFAG-TIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1080 isiV~Qdp~LF~g-TIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|++|||++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.|..|
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~L 146 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHEL 146 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccC
Confidence 9999999999975 99999988621 0112 456889999999998877766543
No 114
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.83 E-value=3.1e-21 Score=218.58 Aligned_cols=126 Identities=26% Similarity=0.427 Sum_probs=108.7
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+++|+ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. |++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 389999999995 34589999999999999999999999999999999999999999999999999887754 6889
Q ss_pred cccccccccccc-cHHHHhccCCCC-CC----CHHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGASD-EI----DESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~~-~~----sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|||++.||.. |++|||.|+... .. .++++.++++..++.++..+.|..|
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 134 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQL 134 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 999999999975 999999987321 11 1346889999999998877766543
No 115
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.83 E-value=3.8e-21 Score=218.96 Aligned_cols=126 Identities=22% Similarity=0.391 Sum_probs=102.9
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999952 4589999999999999999999999999999999999999999999999999887754 6789
Q ss_pred cccccccccccc-cHHHHhccCCCC-CCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGASD-EID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~~-~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|||++.||.. |++|||.|+... ..+ ++++.++++..++.++..+.|..|
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 142 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQL 142 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTC
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhC
Confidence 999999999965 999999997421 122 346888999999988877766543
No 116
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=1.7e-22 Score=221.91 Aligned_cols=147 Identities=17% Similarity=0.168 Sum_probs=96.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHHHHHhcCCCCC---CH
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDA---SM 466 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~~~---~~ 466 (1133)
.++|+||||||||||+++|+|+..|++|+|.++|.++.. ...++.++|++|++.++.. ||.||+.||.... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 2335679999999988865 9999999986422 12
Q ss_pred HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh
Q 041277 467 EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546 (1133)
Q Consensus 467 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~ 546 (1133)
+.+.+... .++...++ .+||||||||+++|||++. +++||||+++||+...+ .++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~----~l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE----FMKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH----HHHHHH
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH----HHHHHH
Confidence 23333332 23333333 2699999999999999875 99999999999998632 333333
Q ss_pred CCCeEEEEecCcchhh
Q 041277 547 VGRTTIIIAHRLSTIR 562 (1133)
Q Consensus 547 ~~~t~i~itH~~~~~~ 562 (1133)
+..++|+|.|+.+.+.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999887663
No 117
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.82 E-value=5.1e-21 Score=216.18 Aligned_cols=124 Identities=22% Similarity=0.450 Sum_probs=107.3
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|+ +. +|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+. .|++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 23 8999999999999999999999999999999999999999999999999987554 578999
Q ss_pred ccccccccccc-cHHHHhccCCC--CCCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1082 LVSQEPTLFAG-TIRENIAYGAS--DEIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1082 iV~Qdp~LF~g-TIreNI~~g~~--~~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+|||++.||.. |++|||.|+.. ....++++.++++..++.++..+.|..|
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~L 128 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhC
Confidence 99999999986 99999998621 0112378999999999988877766543
No 118
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.82 E-value=4.6e-21 Score=206.48 Aligned_cols=121 Identities=22% Similarity=0.352 Sum_probs=103.3
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|+ + +|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+ ..|++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999994 2 59999999999 999999999999999999999999999999999999997643 4578999
Q ss_pred ccccccccccc-cHHHHhccCCCCC---CCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1082 LVSQEPTLFAG-TIRENIAYGASDE---IDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1082 iV~Qdp~LF~g-TIreNI~~g~~~~---~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+|||+|.+|.. |++||+.++.... ..++++.++++..++.++..+.|..
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 126 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR 126 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGG
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhh
Confidence 99999999987 9999999874210 1245788899999998876665543
No 119
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.82 E-value=2.5e-23 Score=233.00 Aligned_cols=166 Identities=16% Similarity=0.136 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEE----------------------
Q 041277 328 MAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLT---------------------- 385 (1133)
Q Consensus 328 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~---------------------- 385 (1133)
+.++.|+.+.+..+... .+.......++.|+++||++.|. ++++++++.
T Consensus 15 r~~~~~l~~~~~~~~~~----~~~~~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (312)
T 3aez_A 15 RRQWRALRMSTPLALTE----EELVGLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNP 85 (312)
T ss_dssp HHHHHGGGTTCCCCCCH----HHHHTTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHhcCCCCCCH----HHHHhccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhccccccc
Confidence 45566665544432211 11122233456799999999994 367777765
Q ss_pred -eeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCC---
Q 041277 386 -IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGK--- 461 (1133)
Q Consensus 386 -i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~--- 461 (1133)
+++|+++||+||||||||||+++|.|+++|..|. +++++|+|++.+++.|++||+.+..
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g 148 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKG 148 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTT
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcC
Confidence 8999999999999999999999999999998663 3699999999999889999997532
Q ss_pred -CC-CCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCCh
Q 041277 462 -ED-ASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532 (1133)
Q Consensus 462 -~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~ 532 (1133)
+. ...+.+ .++++.+..|.. .. ...|||||+||+++|||++.+|+|+|||||++.+|+
T Consensus 149 ~~~~~d~~~~---------~~~L~~l~~~~~~~~----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 149 FPESYNRRAL---------MRFVTSVKSGSDYAC----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp SGGGBCHHHH---------HHHHHHHHTTCSCEE----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CChHHHHHHH---------HHHHHHhCCCcccCC----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 21 112222 233444433432 22 247999999999999999999999999999999986
No 120
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.82 E-value=1.8e-22 Score=223.21 Aligned_cols=158 Identities=15% Similarity=0.206 Sum_probs=126.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCC
Q 041277 934 GYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPA 1013 (1133)
Q Consensus 934 g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~ 1013 (1133)
+..+.+...+|+.+... ..++..+..++..+.++..+.+|+.++++.+++... +... .++..+.|+|+||+|+|+
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~--~~~~-~~~~~~~i~~~~vs~~y~- 112 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT--GEGS-WKSILTFFNYQNIELITF- 112 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC--SSCC-THHHHHHHHHTTCCHHHH-
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC--CCCc-ccccCCeEEEEEEEEEcC-
Confidence 44556667777766555 578999999999999999999999999986543221 1111 112235699999999995
Q ss_pred CCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccccccccc
Q 041277 1014 RPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGT 1093 (1133)
Q Consensus 1014 ~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gT 1093 (1133)
.++|+|+||+|++|+++|||||||||||||+++|+|+| +|+| +++|+|+|.||++|
T Consensus 113 ---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~t 168 (305)
T 2v9p_A 113 ---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLAS 168 (305)
T ss_dssp ---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGG
T ss_pred ---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccccc
Confidence 35999999999999999999999999999999999999 7999 46899999999999
Q ss_pred HHH-HhccCCCCCCCHHHHHHHHHHcchHHHHhh-cccccC
Q 041277 1094 IRE-NIAYGASDEIDESEIVEAAKAANAHDFIAG-LNEGYD 1132 (1133)
Q Consensus 1094 Ire-NI~~g~~~~~sdeei~~Al~~a~l~dfI~~-LP~G~d 1132 (1133)
++| ||.++ + +.++ +++++|+. ||+|||
T Consensus 169 i~~~ni~~~-~-~~~~----------~~~~~i~~~L~~gld 197 (305)
T 2v9p_A 169 LADTRAALV-D-DATH----------ACWRYFDTYLRNALD 197 (305)
T ss_dssp GTTCSCEEE-E-EECH----------HHHHHHHHTTTGGGG
T ss_pred HHHHhhccC-c-cccH----------HHHHHHHHHhHccCC
Confidence 998 99997 3 3443 35678887 898886
No 121
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.82 E-value=6.2e-22 Score=224.32 Aligned_cols=174 Identities=19% Similarity=0.249 Sum_probs=127.0
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC----HHHH--hhhceEEecCCC-Ccc-c
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ----LKWL--RSQMGLVSQEPA-LFA-T 451 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~~-~ 451 (1133)
.++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..|+|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578899999999999999999999999999999999999999999886542 1222 457999999987 665 4
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCcccC
Q 041277 452 SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR--ILLLDEATSA 529 (1133)
Q Consensus 452 ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~--illlDE~ts~ 529 (1133)
|++||+.++.....+. ..++.++ ..........+|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~---~lldt~G-----------l~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV---VLCDTSG-----------RLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE---EEEECCC-----------CSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH---HHHHhcC-----------CChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 9999998642110000 0111111 1111111223588 999999999999999 99999 9999
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEEec---------Ccchhhc-CCEEEEEeCCeE
Q 041277 530 LDSESERVVQEALDKAVVGRTTIIIAH---------RLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 530 lD~~~~~~i~~~l~~~~~~~t~i~itH---------~~~~~~~-~d~i~~l~~G~i 575 (1133)
+|+.++.. .+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 290 lD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99986531 1211 24899999999 3344433 789999999964
No 122
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.82 E-value=1.1e-22 Score=215.59 Aligned_cols=168 Identities=15% Similarity=0.151 Sum_probs=110.6
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHH
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIK 454 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~ 454 (1133)
.++++| .++++||+++|+||||||||||+++|+|+++. |.+++.....-.....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 358888 79999999999999999999999999999963 44443221111112235679999999988764 777
Q ss_pred HHHhc-----CC-C--CCCHHHHHHH----------HHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 455 ENILF-----GK-E--DASMEEVIEA----------AKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 455 eni~~-----~~-~--~~~~~~~~~~----------~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+|+.. ++ . ....+++.+. ++..++.++....|. .|| |++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EEEE
Confidence 77632 10 0 0122233222 223344444444432 455 8999
Q ss_pred CCCEEEEeCcccCC----ChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEe
Q 041277 517 APRILLLDEATSAL----DSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQ 571 (1133)
Q Consensus 517 ~~~illlDE~ts~l----D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~ 571 (1133)
+|++++|||||+++ |+..++.+.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 6778888999888774 48999999999998875 99999984
No 123
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.81 E-value=5.9e-21 Score=207.66 Aligned_cols=124 Identities=20% Similarity=0.350 Sum_probs=102.3
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh--cCCCCCeEEECCcccCCCChhHH-hh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF--YDPLKGDVKIDDRDIRSYHLRSL-RR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~--ydp~~G~I~IdG~dI~~i~l~~L-R~ 1078 (1133)
|+++||+|+|++ .++|+|+||+|++||.+||+||||||||||+++|.|+ ++|++|+|.+||.|+.+.+.... |.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999953 4699999999999999999999999999999999999 89999999999999998887765 45
Q ss_pred cccccccccccccc-cHHHHhccCCC---C-CCC----HHHHHHHHHHcch-HHHHhhcc
Q 041277 1079 HIALVSQEPTLFAG-TIRENIAYGAS---D-EID----ESEIVEAAKAANA-HDFIAGLN 1128 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~g-TIreNI~~g~~---~-~~s----deei~~Al~~a~l-~dfI~~LP 1128 (1133)
.+++|||+|.+|.+ |++||+.++.. . ... ++++.++++..++ .++..+.|
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 69999999999986 99999976421 0 111 3467788888888 45555433
No 124
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.81 E-value=3.7e-21 Score=218.27 Aligned_cols=128 Identities=27% Similarity=0.416 Sum_probs=108.3
Q ss_pred cEEEEeEEEECCCCCCCc--cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC---hhH
Q 041277 1001 NIELQNVHFAYPARPDVM--IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH---LRS 1075 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~--vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~---l~~ 1075 (1133)
.|+++||+++|++ .+ +|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999952 35 899999999999999999999999999999999999999999999999997621 334
Q ss_pred Hhhcccccccccccccc-cHHHHhccCCCC-CCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1076 LRRHIALVSQEPTLFAG-TIRENIAYGASD-EID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1076 LR~~isiV~Qdp~LF~g-TIreNI~~g~~~-~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
.|++|++|||++.||.. |++|||.|+... ..+ ++++.++++..++.++..+.|..|
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~L 141 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPREL 141 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 57899999999999976 999999987421 112 356889999999998877766543
No 125
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.81 E-value=2e-20 Score=206.82 Aligned_cols=113 Identities=27% Similarity=0.443 Sum_probs=90.0
Q ss_pred cccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh
Q 041277 999 TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078 (1133)
Q Consensus 999 ~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~ 1078 (1133)
.+.|+++||+|+| + ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~--~---~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG--T---PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C--C---CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC--c---eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 4579999999965 2 489999999999999999999999999999999999999999999998
Q ss_pred cccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccC
Q 041277 1079 HIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~d 1132 (1133)
+|+||||+|.+|.+|++|||. +.. ..+..+.++++.+++.+++..+|++++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~ 150 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GVS--YDEYRYRSVIKACQLEEDISKFAEKDN 150 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TTC--CCHHHHHHHHHHTTCHHHHHTSTTGGG
T ss_pred EEEEEeCCCccCcccHHHHhh-Ccc--cchHHHHHHHHHhChHHHHHhcccccc
Confidence 499999999999999999998 532 345566778888999999999987764
No 126
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.81 E-value=1.2e-20 Score=215.45 Aligned_cols=126 Identities=23% Similarity=0.411 Sum_probs=106.5
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC------CChh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS------YHLR 1074 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~------i~l~ 1074 (1133)
.|+++||+++|+ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+ ++..
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 389999999995 2458999999999999999999999999999999999999999999999999976 5543
Q ss_pred HHhhccccccccccccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1075 SLRRHIALVSQEPTLFA-GTIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1075 ~LR~~isiV~Qdp~LF~-gTIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|++|++|||++.||. -|++|||.|+.. ...+ ++++.++++..++.++..+.|..|
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 140 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPREL 140 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGS
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccC
Confidence 688999999999996 599999998621 0112 346888999999988877666543
No 127
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.79 E-value=2.7e-20 Score=203.02 Aligned_cols=122 Identities=19% Similarity=0.354 Sum_probs=103.6
Q ss_pred EEEEeEEEECCCC-CCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1002 IELQNVHFAYPAR-PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
|+++||+++|+++ ...++|+|+||+|+ ||++||+||||||||||+++|.|++ |++|+|.+||.|+.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999531 01469999999999 9999999999999999999999999 9999999999999765 34 8899
Q ss_pred c-ccccccccccccHHHHhccCCC-CCCCHHHHHHHHHHcchH-HHHhhccc
Q 041277 1081 A-LVSQEPTLFAGTIRENIAYGAS-DEIDESEIVEAAKAANAH-DFIAGLNE 1129 (1133)
Q Consensus 1081 s-iV~Qdp~LF~gTIreNI~~g~~-~~~sdeei~~Al~~a~l~-dfI~~LP~ 1129 (1133)
+ +|||+|.+ +.|++||+.++.+ ....++++.++++..+++ +...+.|.
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 127 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLY 127 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGG
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChh
Confidence 9 99999999 9999999987531 123577899999999998 76665544
No 128
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.79 E-value=5.5e-20 Score=199.89 Aligned_cols=115 Identities=23% Similarity=0.369 Sum_probs=97.1
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
-|+++||+++|+. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|. +|++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999951 23599999999999999999999999999999999999999999998 46789
Q ss_pred cccccccccc-cccHHHHhccCCC---------CCCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1081 ALVSQEPTLF-AGTIRENIAYGAS---------DEIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1081 siV~Qdp~LF-~gTIreNI~~g~~---------~~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+||||+|.+| ..|++||+.++.. ....++++.++++..++.++..+.|..
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 128 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS 128 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhh
Confidence 9999999987 6799999998631 111235688999999998877665543
No 129
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.78 E-value=9.5e-21 Score=214.91 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=144.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC-------C
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL-------Q 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~-------~ 431 (1133)
..++.+++++.|+. ...+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+. .
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 35788999999973 23589999 99999999999999999999999999999999999999988653211 1
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCccccc-ccCCCCCCChHHHHHHHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ-VGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGqkqri~i 510 (1133)
...+++.+.+++|... + ..+++..+.....+.++... .|.+.. +-+...+||+|| ||+++
T Consensus 121 ~~~~~~~v~~~~~~~~----~------------~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR----P------------ALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHHTTEEEEEECTTS----C------------HHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhhceEEEEECCCC----C------------HHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHH
Confidence 2223444566665321 1 12333333333333343332 122211 113456899999 99999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh---CCC-----eEEEEecCcchhhcCCEEEEEeCCeEEeecCcc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV---VGR-----TTIIIAHRLSTIRNADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~---~~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 582 (1133)
| +.+|++ |+++|+.....+.+.+++.. +|. |++++||+++ -.-||+++++.+|+|+.+|+.+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~ 251 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELA 251 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHH
Confidence 9 688888 99999999999999998874 366 8999999998 4459999999999999999887
Q ss_pred hhc
Q 041277 583 ELI 585 (1133)
Q Consensus 583 ~l~ 585 (1133)
++.
T Consensus 252 ~~~ 254 (347)
T 2obl_A 252 EEN 254 (347)
T ss_dssp TTT
T ss_pred HcC
Confidence 764
No 130
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.78 E-value=1.4e-21 Score=198.73 Aligned_cols=111 Identities=21% Similarity=0.239 Sum_probs=88.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccCCC---ccEEEECCeecCCCC---HHHHh-hhce----EEecCCCCccccHHHHHh
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVSIDKLQ---LKWLR-SQMG----LVSQEPALFATSIKENIL 458 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~~~---~G~i~~~g~~~~~~~---~~~~r-~~i~----~v~Q~~~l~~~ti~eni~ 458 (1133)
++++|+|+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+.+| +++| +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988776 66777 5788 899999887 111
Q ss_pred cCCCCCCHHHHHHHHHHhchHHHHHh-CCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 041277 459 FGKEDASMEEVIEAAKASNAHNFIRQ-LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRIL 521 (1133)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~il 521 (1133)
+ . ++. .+++++++.. +| |+||.++|+ |||||||||+||||++++|++.
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 121 6789999999 99 999999995 9999999999999999999874
No 131
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.78 E-value=4.7e-20 Score=202.29 Aligned_cols=118 Identities=20% Similarity=0.349 Sum_probs=99.3
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh--cCCCCCeEEECCcccCCCChhHH-h
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF--YDPLKGDVKIDDRDIRSYHLRSL-R 1077 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~--ydp~~G~I~IdG~dI~~i~l~~L-R 1077 (1133)
-|+++||+++|+ +.++|+|+||+|++||.+||+||||||||||+++|.|+ ++|++|+|.+||.|+.+.+.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 34699999999999999999999999999999999999 67999999999999998887766 4
Q ss_pred hcccccccccccccc-cHHHHhccCC--------CCCCC----HHHHHHHHHHcchH
Q 041277 1078 RHIALVSQEPTLFAG-TIRENIAYGA--------SDEID----ESEIVEAAKAANAH 1121 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~g-TIreNI~~g~--------~~~~s----deei~~Al~~a~l~ 1121 (1133)
+.+++|||+|.+|.+ |++||+.++. ....+ ++++.++++..++.
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 153 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMP 153 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCC
Confidence 569999999999877 8999986531 00122 24577888888885
No 132
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.77 E-value=1e-19 Score=198.78 Aligned_cols=131 Identities=23% Similarity=0.288 Sum_probs=101.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC-ccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
+|+++| +++|++++|+|||||||||++++|+|+++|+ +|+|.++|.++.... +..+++++|+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~----------- 78 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR----------- 78 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE-----------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH-----------
Confidence 899999 9999999999999999999999999999998 999999997653221 1122333321
Q ss_pred HhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHH
Q 041277 457 ILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER 536 (1133)
Q Consensus 457 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~ 536 (1133)
.+|....+| |++|||||..+|+++++|||| |+++..
T Consensus 79 -----------------------------------~~gl~~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 79 -----------------------------------EVGEDTKSF------ADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp -----------------------------------EBTTTBSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred -----------------------------------HhCCCHHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 111111123 899999999999999999999 988755
Q ss_pred HHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 537 VVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 537 ~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
.+ ++....|.|+++++|+.+....|||+++|..
T Consensus 115 ~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 115 TA---LRAAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HH---HHHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HH---HHHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 43 3334468999999999986666999988754
No 133
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.76 E-value=1.7e-18 Score=209.01 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=71.8
Q ss_pred CCC-ChHHHHHHHHHHHHhhCC--CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 498 VQM-SGGQKQRIAIARAIIKAP--RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 498 ~~L-SgGqkqri~iARal~~~~--~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
.+| |||||||++||||++.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 456 999999999999999999 99999999999999999999999998877899999999999888899999997653
No 134
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.76 E-value=5.7e-23 Score=235.84 Aligned_cols=201 Identities=11% Similarity=0.004 Sum_probs=134.6
Q ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC-CCCccc
Q 041277 924 FWYGGRLIAD-GYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQP-ERITGN 1001 (1133)
Q Consensus 924 ~~~g~~l~~~-g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~-~~~~g~ 1001 (1133)
.++|++.... +.++.+.+..++.++.....+ .+....+.+..+..+.+|+..++ +|..+. ....... ....+.
T Consensus 52 ~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~-~~~~~~ir~~~~~~ 126 (361)
T 2gza_A 52 ERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEH-GTISVTIRKPSFTR 126 (361)
T ss_dssp EETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCT-TCCEEEEECCCCCC
T ss_pred EECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCC-CCeEEEEEecCCCC
Confidence 4456555555 789999988887776544333 12222222222333445665554 221111 0000000 011244
Q ss_pred E---------EEEeEEEE---CCCCCCCccc---------cCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCe
Q 041277 1002 I---------ELQNVHFA---YPARPDVMIF---------EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060 (1133)
Q Consensus 1002 I---------~f~nVsF~---Y~~~~~~~vL---------~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~ 1060 (1133)
+ +|+||+|+ |++. +.++| +++||+|++|+.++|||||||||||++++|.|+|+|++|.
T Consensus 127 itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 127 RTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp CCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred CCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 5 99999999 9631 23456 9999999999999999999999999999999999999999
Q ss_pred EEECCcccCCCChhHHhhcccccc-ccccc---ccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1061 VKIDDRDIRSYHLRSLRRHIALVS-QEPTL---FAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1061 I~IdG~dI~~i~l~~LR~~isiV~-Qdp~L---F~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+|. +++.+..+|+++++|+ |++.+ +..|+++||+++... .+|..+..+++.+.++++++.+|.|++|
T Consensus 206 I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~-~pd~~l~~e~r~~~~~~~l~~l~~g~~~ 279 (361)
T 2gza_A 206 ITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM-KPTRILLAELRGGEAYDFINVAASGHGG 279 (361)
T ss_dssp EEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS-CCSEEEESCCCSTHHHHHHHHHHTTCCS
T ss_pred EEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc-CCCEEEEcCchHHHHHHHHHHHhcCCCe
Confidence 999985 5677777899999999 99987 899999999987542 3444555666778889999999999875
No 135
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.76 E-value=1.5e-20 Score=227.36 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=121.5
Q ss_pred CccccceeE-EeeCCCEEEEEcCCCCcHHHHHHH--HHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcccc
Q 041277 376 SIIFKDFCL-TIPAGKTVALVGGSGSGKSTVIAL--LQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATS 452 (1133)
Q Consensus 376 ~~~l~~i~l-~i~~g~~~~ivG~sGsGKSTll~~--l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~t 452 (1133)
.++|+++|| .+++|++++|+||||||||||+++ +.|+++|.+|.|+++|.+. ..+....++++||++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc---
Confidence 358999999 999999999999999999999999 6899999999999999873 222334567899999987521
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccC---
Q 041277 453 IKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA--- 529 (1133)
Q Consensus 453 i~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~--- 529 (1133)
+|+.+...... ++..++++..++.+...+.+ ..|||| +|++++|||||+.
T Consensus 101 --~~l~~~~~~~~-~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~lilDe~t~~~~~ 153 (525)
T 1tf7_A 101 --GKLFILDASPD-PEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVSIDSVTSVFQQ 153 (525)
T ss_dssp --TSEEEEECCCC-SSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEEEECSTTTSTT
T ss_pred --CcEEEEecCcc-cchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEEECCHHHHHHh
Confidence 11211100000 00011122223333333333 245665 4779999999984
Q ss_pred --CChHHHHHHHHHHHHHh-CCCeEEEEecCcchh---------hc-CCEEEEEeCCeE
Q 041277 530 --LDSESERVVQEALDKAV-VGRTTIIIAHRLSTI---------RN-ADVIAVVQDGQV 575 (1133)
Q Consensus 530 --lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~---------~~-~d~i~~l~~G~i 575 (1133)
+|+..++.+.+.++.+. .|+|+|+++|+++.+ .. ||+|++|++|++
T Consensus 154 ~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~ 212 (525)
T 1tf7_A 154 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE 212 (525)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEcc
Confidence 58899999999988764 589999999999874 45 999999999653
No 136
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.75 E-value=1e-18 Score=196.09 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=120.7
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc-EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG-EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
+|+++++.+++|++++|+||||||||||++.|+|...|.+| .|.+.+.+ .+...+++++..+.|+..+ +..++
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~~ 97 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSDS 97 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhccc
Confidence 79999999999999999999999999999999999999888 77654433 3455666666555554432 22234
Q ss_pred HhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH-HHHHHHHHHHhhCCCEEEEeCccc---C---
Q 041277 457 ILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ-KQRIAIARAIIKAPRILLLDEATS---A--- 529 (1133)
Q Consensus 457 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq-kqri~iARal~~~~~illlDE~ts---~--- 529 (1133)
+..+. .+.++..+++ .+.+...+-. +.+...++|.+| +||+. |+|+..+|+++|+||||+ +
T Consensus 98 l~~~~--~~~~~~~~~~-----~~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 98 LKREI--IENGKFDQWF-----DELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH--HHHTHHHHHH-----HHHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred cccCC--CCHHHHHHHH-----HHHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 43221 1111222211 1122222211 223334689999 77777 999999999999999999 4
Q ss_pred CCh-HHHHHHHHHHHHHh--CCCeEEEEecCc--c--------------------hhhc-CCEEEEEeCCeE
Q 041277 530 LDS-ESERVVQEALDKAV--VGRTTIIIAHRL--S--------------------TIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 530 lD~-~~~~~i~~~l~~~~--~~~t~i~itH~~--~--------------------~~~~-~d~i~~l~~G~i 575 (1133)
+|. .....+.+.|+++. .|.|+|+++|.. + .+.. ||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 454 45567888887764 389999999995 4 5554 999999999875
No 137
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.75 E-value=1.2e-20 Score=195.56 Aligned_cols=159 Identities=17% Similarity=0.230 Sum_probs=117.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHH
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEE 468 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~ 468 (1133)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..+++ .+++++||++|+. .++ ++|+..- ....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~--~~~~-- 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRV--GLEP-- 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEEC--CCCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcc--cccC--
Confidence 78999999999999999999999999 999 999998886543 4678899999986 232 1222110 0000
Q ss_pred HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH-HHHH---HHhhCCCEEEEeC--cccCCChHHHHHHHHHH
Q 041277 469 VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI-AIAR---AIIKAPRILLLDE--ATSALDSESERVVQEAL 542 (1133)
Q Consensus 469 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri-~iAR---al~~~~~illlDE--~ts~lD~~~~~~i~~~l 542 (1133)
-+...+..+|+.+..+|||||+++ +++| |+..+|+++|+|| |+..+|....+.+.+.+
T Consensus 69 ----------------~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 69 ----------------PPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp ----------------CSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred ----------------CccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 001123478888899999999998 5566 7899999999999 89889998777776666
Q ss_pred HHHhCCCeEEE--Ee--cCcchhhcCCEEEEEeCCeEEeec
Q 041277 543 DKAVVGRTTII--IA--HRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 543 ~~~~~~~t~i~--it--H~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
+. .+|+|+ ++ ||.+ ...+|+|..+++|+|++-.
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 53 445554 34 9875 4457888888899998743
No 138
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.75 E-value=1.2e-17 Score=190.63 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=67.7
Q ss_pred CCCCCChHHHH------HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEE
Q 041277 496 RGVQMSGGQKQ------RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIA 568 (1133)
Q Consensus 496 ~g~~LSgGqkq------ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~ 568 (1133)
....||||||| |+++|||++.+|++|||||||++||+.....+.+.|+++. +++|+|+|||+.+....||+++
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 34679999999 6788889999999999999999999999999999998864 5789999999987666799999
Q ss_pred EEe
Q 041277 569 VVQ 571 (1133)
Q Consensus 569 ~l~ 571 (1133)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 139
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.75 E-value=3.6e-21 Score=221.37 Aligned_cols=174 Identities=21% Similarity=0.252 Sum_probs=141.6
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC-ccEEEECCeecCCCCHHHHhhhceEEec-----CCCCccc
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-GGEIILDGVSIDKLQLKWLRSQMGLVSQ-----EPALFAT 451 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~l~~~ 451 (1133)
+|++++ +++|++++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .+++.+++|+| ++..|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHH
Confidence 566665 7899999999999999999999999999998 899987776653 2 35678999999 8889999
Q ss_pred cHHHHHhcCCCCC-------CHHHHHHHHHHhch-----------------HHHH------------HhCCCcccccccC
Q 041277 452 SIKENILFGKEDA-------SMEEVIEAAKASNA-----------------HNFI------------RQLPQQYDTQVGE 495 (1133)
Q Consensus 452 ti~eni~~~~~~~-------~~~~~~~~~~~~~~-----------------~~~i------------~~l~~g~~t~~~~ 495 (1133)
++++|++.. |+. +.+.+..+++.++. +..+ ..+++++++.|++
T Consensus 201 ~l~~~L~~~-pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 201 ALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHTTSC-CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHhhhC-cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 999999974 443 56666666665542 1111 1246688999999
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCE--EEEeCcccCCChH----H-----HHHHHHHHHHHhCCCeEEEEecCcch
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRI--LLLDEATSALDSE----S-----ERVVQEALDKAVVGRTTIIIAHRLST 560 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~i--lllDE~ts~lD~~----~-----~~~i~~~l~~~~~~~t~i~itH~~~~ 560 (1133)
++..+||| ||+++||+++.+|+| +|+||+|++||.. + +...+++++...+|+|.+.++||++.
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 99999999 899999999999999 9999999999965 2 34577788778889999999999874
No 140
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.74 E-value=3.2e-18 Score=218.60 Aligned_cols=172 Identities=17% Similarity=0.171 Sum_probs=122.8
Q ss_pred ccEEEEE-----EEEEcCCCCCCccccceeEEeeC-------CCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCee
Q 041277 359 GEVEFKC-----VQFAYPSRPESIIFKDFCLTIPA-------GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS 426 (1133)
Q Consensus 359 ~~i~~~~-----v~~~y~~~~~~~~l~~i~l~i~~-------g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~ 426 (1133)
+.|+++| |++.|++ +..+++|++|++++ |++++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 9999943 23599999999987 999999999999999999999 98863
Q ss_pred cCCCCHHHHhhhce-EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 427 IDKLQLKWLRSQMG-LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 427 ~~~~~~~~~r~~i~-~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..++| ||||++. ..|+.|||... .++.+.+.. | ..++|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r---------------ig~~d~~~~---~--------~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR---------------LGASDRIMS---G--------ESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE---------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH---------------cCCHHHHhh---c--------hhhhHHHHH
Confidence 34677 9999873 55777776421 111121111 1 135777776
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHH-HHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEE--eec
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSES-ERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVM--ETG 579 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~-~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~--~~g 579 (1133)
+ +++||+++.+|+++|||||++++|+.. ...+++.++.+. + |+|+|++||+++.+.. ||++.++ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 999999999999999999999999986 455777777764 3 8999999999998875 8998886 58887 455
Q ss_pred Ccch
Q 041277 580 SHDE 583 (1133)
Q Consensus 580 ~~~~ 583 (1133)
++++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 5433
No 141
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.72 E-value=1.3e-17 Score=201.79 Aligned_cols=152 Identities=18% Similarity=0.126 Sum_probs=116.3
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHh-cCC
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENIL-FGK 461 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~-~~~ 461 (1133)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.+++|++. .+++++.. +|.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g~ 333 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWGM 333 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTSC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcCC
Confidence 4489999999999999999999999999998885 53 01456667652 24555542 221
Q ss_pred CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChH-----HHH
Q 041277 462 EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE-----SER 536 (1133)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~-----~~~ 536 (1133)
+.++ +.. .|..........+|||||+||+++||++..+|+++|+| ||++||.. .++
T Consensus 334 ---~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 334 ---DFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp ---CHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred ---CHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 2111 111 12222333445689999999999999999999999999 99999999 888
Q ss_pred HHHHHHHHHh-CCCeEEEEecCc----------chhhc-CCEEEEEeCCe
Q 041277 537 VVQEALDKAV-VGRTTIIIAHRL----------STIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 537 ~i~~~l~~~~-~~~t~i~itH~~----------~~~~~-~d~i~~l~~G~ 574 (1133)
.+.+.++.+. .|.|+|+++|+. ..+.. ||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8888887764 589999999998 66665 99999999987
No 142
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.71 E-value=1.5e-20 Score=197.50 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=121.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccC-------------CCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccH
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYA-------------PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSI 453 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti 453 (1133)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|+++++++++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 78897 589988888888888876 69999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH-HHhhCCCEEEEeCcccCCCh
Q 041277 454 KENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR-AIIKAPRILLLDEATSALDS 532 (1133)
Q Consensus 454 ~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR-al~~~~~illlDE~ts~lD~ 532 (1133)
.+|+ +|. +.+++.++++.....- .+-.|+|+++.... ++ .|| +++.+|++++|||+|+++|.
T Consensus 77 ~~n~-~g~---~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 77 SGNL-YGT---SKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp TTEE-EEE---EHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred cCcc-CCC---CHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 9998 664 4677777776532111 11234555554321 12 567 88999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 533 ESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 533 ~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
++++.|++.|....++ +.++| +. ..+|+|+++++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999998876544 34567 34 67999988875
No 143
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.69 E-value=5e-17 Score=160.69 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=70.9
Q ss_pred CCCCCCChHHHHHHHHH------HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEE
Q 041277 495 ERGVQMSGGQKQRIAIA------RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVI 567 (1133)
Q Consensus 495 ~~g~~LSgGqkqri~iA------Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i 567 (1133)
....+||||||||++|| ||++.+|+++||||||++||+.+.+.+.+.+.++. +|+|+|++||+......||++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 45678999999999876 99999999999999999999999999999999874 589999999999655669999
Q ss_pred EEE--eCCe
Q 041277 568 AVV--QDGQ 574 (1133)
Q Consensus 568 ~~l--~~G~ 574 (1133)
++| ++|.
T Consensus 133 i~l~~~~g~ 141 (148)
T 1f2t_B 133 IRISLENGS 141 (148)
T ss_dssp EEEEEETTE
T ss_pred EEEEcCCCe
Confidence 999 4554
No 144
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.69 E-value=6.2e-17 Score=191.06 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=67.3
Q ss_pred CCChHHHHHHHHHHHHh----hCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhcCCEEEEEe
Q 041277 499 QMSGGQKQRIAIARAII----KAPRILLLDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRNADVIAVVQ 571 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~----~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~~l~ 571 (1133)
.||||||||++|||+++ .+|+++||||||++||+.....+.+.|++..+ +.++|++||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 58999999999999999999999999988753 789999999988878899999986
No 145
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.69 E-value=8.6e-21 Score=217.71 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=149.1
Q ss_pred HHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccc-ccccc
Q 041277 282 LCYYGSRMVMY-HGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEIL-ENVLG 359 (1133)
Q Consensus 282 ~~~~g~~~v~~-~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~-~~~~~ 359 (1133)
+.+.|++.+.. +.+|.+.+.+++.++.....+ .+....+.+..+..+.+|+++++ +|....... .... ....+
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~-~~~ir~~~~~ 125 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTI-SVTIRKPSFT 125 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCC-EEEEECCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCe-EEEEEecCCC
Confidence 34456655555 789999988887766554332 11112222333344567888877 332211100 0000 01123
Q ss_pred cE---------EEEEEEEE---cCCCCCCccc---------cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 360 EV---------EFKCVQFA---YPSRPESIIF---------KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 360 ~i---------~~~~v~~~---y~~~~~~~~l---------~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
.+ +|+||+|+ |+.. +.++| +++||++++|+.++|+||||||||||+++|+|+++|++|
T Consensus 126 ~itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g 204 (361)
T 2gza_A 126 RRTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQR 204 (361)
T ss_dssp CCCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSC
T ss_pred CCCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCce
Confidence 34 88999999 8632 23455 999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhhhceEEe-cCCCC---ccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCccccccc
Q 041277 419 EIILDGVSIDKLQLKWLRSQMGLVS-QEPAL---FATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG 494 (1133)
Q Consensus 419 ~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~l---~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 494 (1133)
.|.++|. .++.....++.+++++ |++.+ +..|+++||.++.....+..+...++.+++.++++.+|.|++|.++
T Consensus 205 ~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~ 282 (361)
T 2gza_A 205 LITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSIT 282 (361)
T ss_dssp EEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEE
T ss_pred EEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEE
Confidence 9999985 3444445677899999 88876 6779999999875433332223333445567889999999999999
Q ss_pred CCCCCCChHHHHHHHHHH
Q 041277 495 ERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 495 ~~g~~LSgGqkqri~iAR 512 (1133)
+-+.+-..+..+|+....
T Consensus 283 t~H~~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 283 SCHAGSCELTFERLALMV 300 (361)
T ss_dssp EEECSSHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHH
Confidence 887777888999998765
No 146
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.69 E-value=1.3e-16 Score=201.02 Aligned_cols=168 Identities=15% Similarity=0.136 Sum_probs=118.6
Q ss_pred ccEEEEEEEEEcCCC--CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHH--------HhccCCCccEEEECCeecC
Q 041277 359 GEVEFKCVQFAYPSR--PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALL--------QRFYAPLGGEIILDGVSID 428 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l--------~~~~~~~~G~i~~~g~~~~ 428 (1133)
+.+++++...-+-.. ....+++|++|++++|++++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 457787764333111 134689999999999999999999999999999999 44444433211
Q ss_pred CCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 429 KLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 429 ~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++.+. .+|. ..++.+.+ ...+|+|++++.
T Consensus 702 ----------~~~~d---~i~~------------------------~ig~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA------------------------RVGAGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE------------------------ECC-----------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH------------------------hcCchhhH--------------HHhHhhhHHHHH
Confidence 11000 0000 01111111 125788888888
Q ss_pred HHHHHH--hhCCCEEEEeCcccCCChHHHHHH-HHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcch
Q 041277 509 AIARAI--IKAPRILLLDEATSALDSESERVV-QEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 509 ~iARal--~~~~~illlDE~ts~lD~~~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 583 (1133)
.+|+++ +.+|+++||||||+|+|+.....+ ...++.+. .|+|+|++||+.+....||++..+++|++...++.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 899999999999999999887766 55555554 3899999999988777899999999999999888777
Q ss_pred hc
Q 041277 584 LI 585 (1133)
Q Consensus 584 l~ 585 (1133)
+.
T Consensus 811 l~ 812 (934)
T 3thx_A 811 LT 812 (934)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 147
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.69 E-value=2.5e-18 Score=187.90 Aligned_cols=181 Identities=17% Similarity=0.114 Sum_probs=110.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHH--hccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQ--RFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~--~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+++++++..++.- + .+|.+ .|++|++++|+||||||||||+++|+ +..++.+|.+.+++.+... .....+++
T Consensus 7 ~~~~~i~tg~~~l-D-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGF-D-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTT-G-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhH-H-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 4556666655421 1 13333 78999999999999999999999999 7657778888887754321 12233456
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
+++++|+...+.. ++.++....... ...+. + ..+ ...+-++.++...+..-..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~-~~~------------~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGL-PSEEK-----------F-VLE------------DRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred cCCChHHHhhcCCEEEEEcccccccc-ccccc-----------e-ecc------------CcccHHHHHHHHHHHHHhhC
Confidence 8888887543321 333332211000 00000 0 000 01233444444444444579
Q ss_pred CCEEEEeCcccCCC-----hHHHHHHHHHHHHHh-CCCeEEEEecCcchh---------h-cC-CEEEEEeC
Q 041277 518 PRILLLDEATSALD-----SESERVVQEALDKAV-VGRTTIIIAHRLSTI---------R-NA-DVIAVVQD 572 (1133)
Q Consensus 518 ~~illlDE~ts~lD-----~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~---------~-~~-d~i~~l~~ 572 (1133)
|+++++||||+++| +..++.+.+.++.+. .|+|+|++||+++.+ . .| |+|++|++
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 99999999999997 566666888887764 599999999999876 3 47 99999964
No 148
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.68 E-value=5.4e-18 Score=193.36 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=118.8
Q ss_pred cccce-eEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc--CCCc----cE-EEECCeecCCCCHHHHhhhceEEecCCCCc
Q 041277 378 IFKDF-CLTIPAGKTVALVGGSGSGKSTVIALLQRFY--APLG----GE-IILDGVSIDKLQLKWLRSQMGLVSQEPALF 449 (1133)
Q Consensus 378 ~l~~i-~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~--~~~~----G~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 449 (1133)
.|+++ ++.+++|++++|+||||||||||++.+++.+ +|++ |+ |++++.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 56665 6899999999999999999999999999998 6766 68 899987642 246788999999888
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh-------hCCCEEE
Q 041277 450 ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII-------KAPRILL 522 (1133)
Q Consensus 450 ~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~-------~~~~ill 522 (1133)
..++.+||.+.... . |++|+|++.++++++ .+|+++|
T Consensus 193 ~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 193 PDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 88999998875421 1 345666666666666 6899999
Q ss_pred EeCcccCCChHH------------HHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 523 LDEATSALDSES------------ERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 523 lDE~ts~lD~~~------------~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+||||+.+|++. ...+...|.++. .+.|+|+++|....... ++.+.+...|++++.+.+..|.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 999999999862 133444444443 38999999998775543 3456778889999888877764
No 149
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.68 E-value=1.7e-17 Score=178.84 Aligned_cols=148 Identities=18% Similarity=0.214 Sum_probs=103.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-------CccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHH
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAP-------LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENI 457 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni 457 (1133)
-+++|++++|+||||||||||+++|+|.+.| ..|.+++++.+.. + ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999997665 4457888876521 1 2357778888888777999998
Q ss_pred hcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh-------hCCCEEEEeCcccCC
Q 041277 458 LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII-------KAPRILLLDEATSAL 530 (1133)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~-------~~~~illlDE~ts~l 530 (1133)
.+..... .. .|++++..+++++ .+|+++++||||+.+
T Consensus 95 ~~~~~~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARAFN-SN-----------------------------------HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEECCS-HH-----------------------------------HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEecCC-hH-----------------------------------HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 8754321 11 1122222333333 489999999999999
Q ss_pred ChH-------HH-----HHHHHHHHHHh--CCCeEEEEecCcc----hhhc-CCEEEEEeCCe
Q 041277 531 DSE-------SE-----RVVQEALDKAV--VGRTTIIIAHRLS----TIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 531 D~~-------~~-----~~i~~~l~~~~--~~~t~i~itH~~~----~~~~-~d~i~~l~~G~ 574 (1133)
|++ .+ ..+.+.+.++. .|.|+|++||..+ .+.+ ||++++|++|+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 984 22 24555555543 4899999999544 4765 99999998753
No 150
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.68 E-value=1.3e-18 Score=189.34 Aligned_cols=160 Identities=11% Similarity=0.140 Sum_probs=100.8
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHH
Q 041277 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIK 454 (1133)
Q Consensus 375 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 454 (1133)
+.++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++.....|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 345899999999999999999999999999999999987 655554 246789999999733345999
Q ss_pred HHHhcCCCC--------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCc
Q 041277 455 ENILFGKED--------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEA 526 (1133)
Q Consensus 455 eni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ 526 (1133)
+|+.+.... ...+++.+. ++.+.++.+..+ ..||+||+||+++ ++++.+|+++|+|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRT---------LKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHH---------HHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHH---------HHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 998653211 112222222 222222333333 4799999999988 688899999999998
Q ss_pred ccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh-hc-CCEEEEEeCCe
Q 041277 527 TSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI-RN-ADVIAVVQDGQ 574 (1133)
Q Consensus 527 ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~-~~-~d~i~~l~~G~ 574 (1133)
....|.. + .+. .+.|++++||+...+ +. ++++ ++|+
T Consensus 143 ~~~~~~~----l----~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 143 LVFYSQE----I----RDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp TTTTSHH----H----HTT-CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred cccccHH----H----HHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 8877754 2 222 378999999974333 33 4433 5664
No 151
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.68 E-value=7.9e-19 Score=202.69 Aligned_cols=177 Identities=22% Similarity=0.183 Sum_probs=127.2
Q ss_pred cccceeEEeeC--CCEEEEEcCCCCcHHHHHHHHHhccCCCc----cEEEE----CCeecCCCCHHHHhhhceEEecCCC
Q 041277 378 IFKDFCLTIPA--GKTVALVGGSGSGKSTVIALLQRFYAPLG----GEIIL----DGVSIDKLQLKWLRSQMGLVSQEPA 447 (1133)
Q Consensus 378 ~l~~i~l~i~~--g~~~~ivG~sGsGKSTll~~l~~~~~~~~----G~i~~----~g~~~~~~~~~~~r~~i~~v~Q~~~ 447 (1133)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 46789999999 99999999999999999999999999999 99987 35555 4455555 56999999999
Q ss_pred CccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh-hCCCEEEEeC-
Q 041277 448 LFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII-KAPRILLLDE- 525 (1133)
Q Consensus 448 l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~-~~~~illlDE- 525 (1133)
+|..|++|||.++..+....... .+|+|++||..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAF----------------------------CIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHH----------------------------HHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHH----------------------------HHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 89999999999875321111110 23456677777777764 5888888888
Q ss_pred --cc------cCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 526 --AT------SALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 526 --~t------s~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|+ +++|+..+..+.+.+.++.+ +.++++++|.-..-+.+|++.++++ +++.|+.+||.+
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 54 57888888888888876543 7888888875333333666666654 455666666644
No 152
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.68 E-value=1.9e-17 Score=205.09 Aligned_cols=158 Identities=17% Similarity=0.192 Sum_probs=117.8
Q ss_pred cccEEEEEEEEEcCCC--CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-CCccEEEECCeecCCCCHHH
Q 041277 358 LGEVEFKCVQFAYPSR--PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-PLGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-~~~G~i~~~g~~~~~~~~~~ 434 (1133)
.+.|++++. ++|-- .+..+++|+||+ |++++|+|||||||||++++++|+.. ++.|.+.- .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp------a----- 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP------A----- 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS------S-----
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee------h-----
Confidence 456888887 44431 135689999999 99999999999999999999999874 67786531 0
Q ss_pred HhhhceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 435 LRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
.+..+++++| +|.. ++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 1346888877 4543 66666532 258999999999999
Q ss_pred H--hhCCCEEEEeCc---ccCCChHHH-HHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEe
Q 041277 514 I--IKAPRILLLDEA---TSALDSESE-RVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577 (1133)
Q Consensus 514 l--~~~~~illlDE~---ts~lD~~~~-~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 577 (1133)
+ +.+|+++||||| ||++|+.+. ..+.+.+.+ .|+|+|++||+.+....| .-.++++++..
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~ 715 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAA 715 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEE
Confidence 9 999999999999 999999875 568887776 589999999998876655 22345555544
No 153
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.67 E-value=2.8e-17 Score=183.06 Aligned_cols=151 Identities=23% Similarity=0.236 Sum_probs=104.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH----HHH--hhhceEEecCCCCccc-cHHHHHhcC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL----KWL--RSQMGLVSQEPALFAT-SIKENILFG 460 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~----~~~--r~~i~~v~Q~~~l~~~-ti~eni~~~ 460 (1133)
+|++++|+|||||||||++++|+|+++|++|+|.++|.|+..... ..+ |..+++++|++.+++. |+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999866431 222 4579999999988765 899998653
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHH
Q 041277 461 KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540 (1133)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~ 540 (1133)
.. .+.+..+-..+...+. ....++..++||++||||+..+|+.++| .||+.+...+.+
T Consensus 181 ~~-------------~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~ 238 (304)
T 1rj9_A 181 KA-------------RGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLE 238 (304)
T ss_dssp HH-------------HTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHH
T ss_pred Hh-------------CCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHH
Confidence 10 0000000011111110 1112466779999999999999994444 444444444444
Q ss_pred HHHHHh--CCCeEEEEecCcch
Q 041277 541 ALDKAV--VGRTTIIIAHRLST 560 (1133)
Q Consensus 541 ~l~~~~--~~~t~i~itH~~~~ 560 (1133)
.++... .+.|+|++||...+
T Consensus 239 ~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHcCCcEEEEECCccc
Confidence 444432 38899999998554
No 154
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.66 E-value=5.3e-19 Score=187.98 Aligned_cols=140 Identities=15% Similarity=0.185 Sum_probs=107.3
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcc---ccHHHHHhcCC-
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA---TSIKENILFGK- 461 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~---~ti~eni~~~~- 461 (1133)
.++|++++|+||||||||||+++|.|++.| +++|++|++.+++ .|+++|+.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 5899999998874 37877766532
Q ss_pred -C-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH----HHHHHHHHHHhhCCCEEEEeCcccC------
Q 041277 462 -E-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ----KQRIAIARAIIKAPRILLLDEATSA------ 529 (1133)
Q Consensus 462 -~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq----kqri~iARal~~~~~illlDE~ts~------ 529 (1133)
+ ....+.+.++++..++.+.+ ...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPV-----------EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCE-----------EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCc-----------CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 2 22345555555544332222 12244677775 5799999999999999999999999
Q ss_pred -CChHHHHHHHHHHHHH--hCCCeEEEEecCc
Q 041277 530 -LDSESERVVQEALDKA--VVGRTTIIIAHRL 558 (1133)
Q Consensus 530 -lD~~~~~~i~~~l~~~--~~~~t~i~itH~~ 558 (1133)
||+..+..+.+.+.+. .+|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999888764 3589999999984
No 155
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.65 E-value=1.3e-18 Score=212.82 Aligned_cols=191 Identities=15% Similarity=0.236 Sum_probs=121.9
Q ss_pred cEEEEEEEEEcCCCCCCccccce----------eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-CccEEEECCeecC
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDF----------CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-LGGEIILDGVSID 428 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i----------~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-~~G~i~~~g~~~~ 428 (1133)
.++++|+++.|+.. .+++|+.+ +++++. +|||||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999642 12345444 366665 999999999999999999999988 7999999999963
Q ss_pred CC---CHHHHhhhceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 429 KL---QLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 429 ~~---~~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
.. ....+|+.++|++|++.+++. ||+|||.++. .. +..... .+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~~------~~~~~~-----------~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------NA------IAGEGM-----------GIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------HH------HHCSSS-----------CCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------HH------hcCCcc-----------ccc---
Confidence 21 134567899999999988765 9999986421 00 111011 111
Q ss_pred HHHHHHHHHHhhCCCEEEEeCc------ccCCChHHHHHHHHHHHHHh-C--CCeEEEEecCcchh--------hc----
Q 041277 505 KQRIAIARAIIKAPRILLLDEA------TSALDSESERVVQEALDKAV-V--GRTTIIIAHRLSTI--------RN---- 563 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~------ts~lD~~~~~~i~~~l~~~~-~--~~t~i~itH~~~~~--------~~---- 563 (1133)
++++.++.+...+|+++++||| |++||+..++.+.+.++++. + +.++++++|+++.. +.
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2334444455568999999999 99999999999999998853 2 56778899997632 11
Q ss_pred -CCEEEEEeCCeEEeecCcchhcc
Q 041277 564 -ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 564 -~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
...|+|+.++.+++.|+.+++.+
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCCC
T ss_pred CCceEEEecchhhcCcccHHHHHH
Confidence 35689999999988888766543
No 156
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.63 E-value=9e-18 Score=187.77 Aligned_cols=163 Identities=16% Similarity=0.095 Sum_probs=80.4
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc-cCCCccEEEECCeecCCCCHHHHhhhceEE
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF-YAPLGGEIILDGVSIDKLQLKWLRSQMGLV 442 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 442 (1133)
+|++++|+.. .++++++|+| +|+||||+|||||++.|.|. ..|++| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~~~---~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHRK---SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECCE---EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 4788889643 4899999998 99999999999999999998 889999 8888877643 11 1 3568999
Q ss_pred ecCCCCc-cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 041277 443 SQEPALF-ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRIL 521 (1133)
Q Consensus 443 ~Q~~~l~-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~il 521 (1133)
+|++.++ .-|+.|+..++......++.....+. +.+..+..+ .++|||||||+++|||++ ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~~~~-----------~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFERYL-----------HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHH--HHHHHHHHH-----------HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHHHHH-----------HHhCHHhhhhhhhhhhhh----ee
Confidence 9987665 45888888775321100111111110 111111111 368999999999999985 99
Q ss_pred EEeCcccC-CChHHHHHHHHHHHHHh--CCCeEEEEecCcch
Q 041277 522 LLDEATSA-LDSESERVVQEALDKAV--VGRTTIIIAHRLST 560 (1133)
Q Consensus 522 llDE~ts~-lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~ 560 (1133)
++||||++ ||+... +.++++. .+.++|+.+|++.+
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99999985 999864 3344433 25678888898753
No 157
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.62 E-value=1.1e-16 Score=182.12 Aligned_cols=147 Identities=22% Similarity=0.250 Sum_probs=106.3
Q ss_pred EEEEEEcCCCCCCccccceeE-------EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC-ccEEEECCeecCCCCHHHH
Q 041277 364 KCVQFAYPSRPESIIFKDFCL-------TIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-GGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l-------~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~-~G~i~~~g~~~~~~~~~~~ 435 (1133)
.+++++|... ..+.|+++.+ ...+|++++|+|||||||||++++|+|+++|+ +|.|...+.++. +. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 5677777543 3456777776 77899999999999999999999999999997 566654433332 21 1
Q ss_pred hhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 436 RSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
+...++++|.+.... ..+..+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhh
Confidence 234556666542111 011111 9999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCC
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDG 573 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 573 (1133)
.+|+++++|||| |.++.+.+.++ ...|+|+++++|+.+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77765554443 34599999999999999779999988654
No 158
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=3.9e-17 Score=173.22 Aligned_cols=169 Identities=17% Similarity=0.209 Sum_probs=101.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc-----CCCccEEEE-------CCeecC
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIIL-------DGVSID 428 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~-----~~~~G~i~~-------~g~~~~ 428 (1133)
|+++|++|+|+. +++++ |++++|..++|+|++|||||||++.|+|.. .|+.|.+.. ++..+.
T Consensus 4 l~~~~~~~~~~~----~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMSA----PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEEE----SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheeec----CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 789999999962 37888 899999999999999999999999999998 888888764 223322
Q ss_pred CCC-----------HHHHhhhceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 429 KLQ-----------LKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 429 ~~~-----------~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
+.+ .+.+++.++++.|+....++ ++..++..+.. ..++++.+.++. ..+|. -.++.+
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~-------~~~~~---~~v~nK 146 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD-------SNIAV---LVLLTK 146 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH-------TTCCE---EEEEEC
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHHHHHH-------cCCCe---EEEEec
Confidence 111 12344455555554333322 22223322211 011122222211 12221 123555
Q ss_pred CCCCChHHHHH-HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh
Q 041277 497 GVQMSGGQKQR-IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546 (1133)
Q Consensus 497 g~~LSgGqkqr-i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~ 546 (1133)
...+|+||||| +..||+++.+|+++++||||||+|......+.+.|.+..
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 56799999999 899999999999999999999999999999998887754
No 159
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=4.3e-17 Score=188.76 Aligned_cols=166 Identities=17% Similarity=0.150 Sum_probs=100.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.|+++|++++|+.. .+++|+||+| +|+||||||||||+++|+|...|..| .+|.++...+ ...+..
T Consensus 10 ~~l~~~~l~~~y~~~---~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYRK---SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTTT---TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECCE---EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 458999999999743 4899999998 99999999999999999999886555 2333222111 111346
Q ss_pred ceEEecCCCCc-cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 439 MGLVSQEPALF-ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 439 i~~v~Q~~~l~-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
+++++|++.++ ..||.||+.++... ...+.++. +.+++.. .++.+++||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998877 55999999887531 11111111 1223322 3456778899999999999
Q ss_pred CC---EEEEeCcc-cCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 041277 518 PR---ILLLDEAT-SALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 518 ~~---illlDE~t-s~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 561 (1133)
|+ ++++|||| ++||+.... .++.+..+.++|+|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~----~lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIE----FMKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHH----HHHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHH----HHHHHhccCcEEEEEEcccCc
Confidence 99 99999999 699987642 233344578899999987654
No 160
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.59 E-value=1.1e-15 Score=164.69 Aligned_cols=165 Identities=15% Similarity=0.083 Sum_probs=114.6
Q ss_pred ccccceeE-EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh---hceEEecCCCCcccc
Q 041277 377 IIFKDFCL-TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS---QMGLVSQEPALFATS 452 (1133)
Q Consensus 377 ~~l~~i~l-~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~---~i~~v~Q~~~l~~~t 452 (1133)
+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.|.+.+.+. +...+++ .+++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh----
Confidence 47899988 8999999999999999999999999999888888888766443 2333222 34444443211
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCcccCC
Q 041277 453 IKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR--ILLLDEATSAL 530 (1133)
Q Consensus 453 i~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~--illlDE~ts~l 530 (1133)
+++.+-.. ... ... +. + +- ...|.+|.++...+.+...+|+ ++++||||+.+
T Consensus 83 --~~~~~~~~-~~~--------------~~~--~~-~---~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 83 --KKLIIIDA-LMK--------------EKE--DQ-W---SL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp --TTEEEEEC-CC--------------------CT-T---BC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred --CCEEEEec-ccc--------------ccC--ce-e---ee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 01111000 000 000 00 0 11 1348999998888888888999 99999999888
Q ss_pred --ChHHHHHHHHHHHHHh--CCCeEEEEecCc--------chhhc-CCEEEEEeCCe
Q 041277 531 --DSESERVVQEALDKAV--VGRTTIIIAHRL--------STIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 531 --D~~~~~~i~~~l~~~~--~~~t~i~itH~~--------~~~~~-~d~i~~l~~G~ 574 (1133)
|+.....+.+.|+++. .|.|+|+++|.. ..+.. ||+|++|++.+
T Consensus 137 ~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 137 LDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9988888888887763 489999999998 44655 99999998754
No 161
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.57 E-value=4.4e-15 Score=150.69 Aligned_cols=78 Identities=31% Similarity=0.366 Sum_probs=70.0
Q ss_pred CCCCChHHHHHHHHHHHHh----hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEE--
Q 041277 497 GVQMSGGQKQRIAIARAII----KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVV-- 570 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~----~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l-- 570 (1133)
...||||||||++|||+++ ++|+++||||||++||+.+++.+.+.|++..++.++|+|||+......||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3579999999999999996 4579999999999999999999999999888788999999999888889999865
Q ss_pred eCCe
Q 041277 571 QDGQ 574 (1133)
Q Consensus 571 ~~G~ 574 (1133)
++|.
T Consensus 142 ~~g~ 145 (173)
T 3kta_B 142 RDGV 145 (173)
T ss_dssp ETTE
T ss_pred cCCE
Confidence 4664
No 162
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.57 E-value=5.3e-16 Score=194.86 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=98.3
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHH
Q 041277 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIK 454 (1133)
Q Consensus 375 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 454 (1133)
+..|++|+||++++|++++|+|||||||||+++++.+..-. .+.-.+||++..-+ .+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--------------------aq~g~~vpa~~~~i--~~~ 716 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--------------------AQIGSYVPAEEATI--GIV 716 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------HHHTCCBSSSEEEE--ECC
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------hhcCccccchhhhh--hHH
Confidence 35689999999999999999999999999999999764211 11112333332100 000
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHH
Q 041277 455 ENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES 534 (1133)
Q Consensus 455 eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~ 534 (1133)
+++. ...++.+.+. .+..++|+|++|+..|+|+ +.+|+++||||||+|+|+..
T Consensus 717 d~i~---------------~~ig~~d~l~-----------~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~ 769 (918)
T 3thx_B 717 DGIF---------------TRMGAADNIY-----------KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHD 769 (918)
T ss_dssp SEEE---------------EEC---------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHH
T ss_pred HHHH---------------HhCChHHHHH-----------HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHH
Confidence 1110 0011111111 1224789999999999999 89999999999999999998
Q ss_pred HHHHH-HHHHHHh--CCCeEEEEecCcchhhcCCEE
Q 041277 535 ERVVQ-EALDKAV--VGRTTIIIAHRLSTIRNADVI 567 (1133)
Q Consensus 535 ~~~i~-~~l~~~~--~~~t~i~itH~~~~~~~~d~i 567 (1133)
...+. ..++.+. .|+|+|++||+++....||+.
T Consensus 770 ~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 770 GIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 77776 5555552 489999999999877666653
No 163
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.56 E-value=3.4e-17 Score=181.31 Aligned_cols=129 Identities=9% Similarity=0.033 Sum_probs=94.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCC---C
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKED---A 464 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~---~ 464 (1133)
++.+++|+|+||||||||+++|.+++.+. | . . ++.+.+|+||+++++.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 56799999999999999999999999764 2 0 0 3345666999999999999999875321 0
Q ss_pred CHHHHHHHHHHhchHHHHHhCCCccccc------ccCCCCCCChHHHHHHHHH--HHHhhCCCEEEEeCcccCCChHH
Q 041277 465 SMEEVIEAAKASNAHNFIRQLPQQYDTQ------VGERGVQMSGGQKQRIAIA--RAIIKAPRILLLDEATSALDSES 534 (1133)
Q Consensus 465 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~------~~~~g~~LSgGqkqri~iA--Ral~~~~~illlDE~ts~lD~~~ 534 (1133)
......++.+...+.+++..+++|++|. +...+.++||||+||+++| |++ +|+|+|+||+++++|++.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011222334567889999997754 4566789999999999998 666 999999999999999864
No 164
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.54 E-value=2.1e-15 Score=188.08 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=104.4
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-CccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cH
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SI 453 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti 453 (1133)
..+++|+||+ ++|++++|+|||||||||++++|+|+..+ ..|. .+.. -+..+++++| +|.. ++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----SEEEECCCCE---EEEEEC-
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----hcccceeHHH---HHhhCCH
Confidence 4689999999 99999999999999999999999997532 2231 1111 0234666655 4433 55
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChH
Q 041277 454 KENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533 (1133)
Q Consensus 454 ~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~ 533 (1133)
.||+..+. .++|+|+++ ++.+...+.+|+++|||||++|+|+.
T Consensus 660 ~d~l~~~~------------------------------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 660 ADDLASGR------------------------------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred HHHHHhhh------------------------------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 55543210 235666664 44444568999999999999999997
Q ss_pred HHHHH-HHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 534 SERVV-QEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 534 ~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
....+ .+.++.+. .|.|+|++||+.+....||++..+++|++....
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 65544 56666653 389999999999887779988888888886543
No 165
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.53 E-value=6.4e-16 Score=164.03 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=102.1
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC--CccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cH----HH
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP--LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SI----KE 455 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti----~e 455 (1133)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+.+. ..++.++|++|++.+|.. ++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346789999999999999999999999999986 78999998876542 234679999999988765 44 35
Q ss_pred HHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHH
Q 041277 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESE 535 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~ 535 (1133)
|+.+.... | |-.+++ ++.++..++++||| ||+.+.
T Consensus 86 ~~~~~~~~-------------------------y------------g~~~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 86 HAEVFGNY-------------------------Y------------GTSREA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEEETTEE-------------------------E------------EEEHHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHHhcc-------------------------C------------CCCHHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 54432110 0 000111 23444557999999 999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 536 RVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 536 ~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+.+.+.+. ++.|+++++|+++.+.. |+ +++| .++++++.+
T Consensus 121 ~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 121 QQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 99988775 58999999999998765 32 5666 466666643
No 166
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.9e-15 Score=173.73 Aligned_cols=179 Identities=15% Similarity=0.170 Sum_probs=113.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCE--EEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKT--VALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~--~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
.+++++ +++|++ .+ |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++........++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 355666 778863 24 9999999999999 9999999999999999999984 4455544333333456
Q ss_pred hceEEecCCCCcc-ccHHHHHhcCCCCCCHHH----HHHHHHHhchHHHHHhC-------CCccccc-------ccCCCC
Q 041277 438 QMGLVSQEPALFA-TSIKENILFGKEDASMEE----VIEAAKASNAHNFIRQL-------PQQYDTQ-------VGERGV 498 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~-~ti~eni~~~~~~~~~~~----~~~~~~~~~~~~~i~~l-------~~g~~t~-------~~~~g~ 498 (1133)
.++|++|++.++. .|+.||+.+|.. .+.+. +.+.++. ...+++... +..-|+. +-+.+.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 7999999998874 599999999864 22211 1111111 122333332 1111222 123344
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHH-Hh-CCCeEEEEec
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK-AV-VGRTTIIIAH 556 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~-~~-~~~t~i~itH 556 (1133)
.|+-.+ +.++++|..+++++++|+|+..|.+.....+.+.+++ +. .|.+++.++.
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 577666 7999999999999999999999998877777777775 43 4777777764
No 167
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.48 E-value=3.8e-14 Score=157.23 Aligned_cols=151 Identities=20% Similarity=0.216 Sum_probs=98.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHh-cCCCC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENIL-FGKED 463 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~-~~~~~ 463 (1133)
.+++|++++|+||||||||||++.+++... .|++. .|.+... +..+.|+..+... ..+.+++. ++. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999998764 46653 3443321 2357777765432 22322221 222 1
Q ss_pred CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc--CCChHHH---HHH
Q 041277 464 ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS--ALDSESE---RVV 538 (1133)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts--~lD~~~~---~~i 538 (1133)
....+..+..+... +....+.....||+||+|++ |+++.+|+++++||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 22222222222221 22233455678999998875 68899999999999999 9998544 667
Q ss_pred HHHHHHHh--CCCeEEEEecCcchh
Q 041277 539 QEALDKAV--VGRTTIIIAHRLSTI 561 (1133)
Q Consensus 539 ~~~l~~~~--~~~t~i~itH~~~~~ 561 (1133)
.+.|.++. .|+|+|+++|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77777763 489999999987654
No 168
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.47 E-value=1e-15 Score=172.80 Aligned_cols=153 Identities=16% Similarity=0.102 Sum_probs=108.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc--------CCCccEEEECCeecCCCC---------------HHHHhhhceEE---e
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFY--------APLGGEIILDGVSIDKLQ---------------LKWLRSQMGLV---S 443 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~--------~~~~G~i~~~g~~~~~~~---------------~~~~r~~i~~v---~ 443 (1133)
++++|+|+||||||||++.|+|++ .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999987653 34677789988 7
Q ss_pred cCCCC-ccccHHHHHhcCCCCCCHHHHHHHH-HHhchHHHHHhCCCcccccccC-----CCCCCChHHHHHHHHHHHHhh
Q 041277 444 QEPAL-FATSIKENILFGKEDASMEEVIEAA-KASNAHNFIRQLPQQYDTQVGE-----RGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 444 Q~~~l-~~~ti~eni~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~g~~t~~~~-----~g~~LSgGqkqri~iARal~~ 516 (1133)
|++.+ +..++.||..++.|. .+.+.. ......+ ...+ ++.-+.++- .-.+||+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~-~~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQ-RYLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHH-HEEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccC-eEEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 88764 577999999887542 221111 0000000 0000 011111111 011589999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLS 559 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 559 (1133)
+|+++ ||| +.+.+.++++.++.|+++++|+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99987 888 677777777767899999999743
No 169
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.46 E-value=7.1e-14 Score=149.11 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=96.5
Q ss_pred ccccceeE-EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHH
Q 041277 377 IIFKDFCL-TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKE 455 (1133)
Q Consensus 377 ~~l~~i~l-~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 455 (1133)
+.|+++.. .+++|++++|+||||||||||++.+++ .+..+.++++..+ ..+... +.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~------------------~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPER------------------LVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHH------------------HHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHH------------------HHH
Confidence 35777765 799999999999999999999999999 3333344443321 111111 111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH--HHHHHHHHHHHhhC-CCEEEEeCcccCCCh
Q 041277 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG--QKQRIAIARAIIKA-PRILLLDEATSALDS 532 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG--qkqri~iARal~~~-~~illlDE~ts~lD~ 532 (1133)
.... .....++ ..+.+. + ..+|++ |+|+++.+|+++++ |+++++||||+.+|+
T Consensus 65 ~~~~--~~~~~~~------------~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAET--RGLNPEE------------ALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHT--TTCCHHH------------HHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHh--cCCChHH------------HhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 1110 0011111 111111 1 123444 46789999999986 999999999999998
Q ss_pred HHH-----H---HHHHHHHHHh--CCCeEEEEecCcc-------------hhhc-CCEEEEEeCC
Q 041277 533 ESE-----R---VVQEALDKAV--VGRTTIIIAHRLS-------------TIRN-ADVIAVVQDG 573 (1133)
Q Consensus 533 ~~~-----~---~i~~~l~~~~--~~~t~i~itH~~~-------------~~~~-~d~i~~l~~G 573 (1133)
..+ + .+.+.|+++. .+.|+|+++|... .+.+ ||.|++|++.
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 532 2 3444465553 3899999999865 3444 9999999765
No 170
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.46 E-value=1.7e-15 Score=158.07 Aligned_cols=138 Identities=14% Similarity=0.025 Sum_probs=89.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDA 464 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~ 464 (1133)
.+++|++++|+|||||||||++++|+|. |..|.|.++|.++..... .++.++|++|++. ...|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999997 788999999977643211 1234688888765 4568888886521
Q ss_pred CHHHHHHHHHHhchHHHHHhCCC--ccccc--ccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHH
Q 041277 465 SMEEVIEAAKASNAHNFIRQLPQ--QYDTQ--VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540 (1133)
Q Consensus 465 ~~~~~~~~~~~~~~~~~i~~l~~--g~~t~--~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~ 540 (1133)
.. ..+ .+....++.... +.+.. .+.....+|+||+||+++||++.++|+++ +|++..+.+.+
T Consensus 77 ---~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GR--YAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HH--HHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HH--Hhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 00 000 000000000000 00000 02233579999999999999999999876 57776666666
Q ss_pred HHHH
Q 041277 541 ALDK 544 (1133)
Q Consensus 541 ~l~~ 544 (1133)
.+..
T Consensus 143 ~~~~ 146 (191)
T 1zp6_A 143 QFAD 146 (191)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 5544
No 171
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.45 E-value=7.1e-15 Score=149.27 Aligned_cols=84 Identities=24% Similarity=0.206 Sum_probs=65.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCC---CCeEEECCcccCCCC---hhHHh-hccc----ccccccccccccHHHHhc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPL---KGDVKIDDRDIRSYH---LRSLR-RHIA----LVSQEPTLFAGTIRENIA 1099 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~---~G~I~IdG~dI~~i~---l~~LR-~~is----iV~Qdp~LF~gTIreNI~ 1099 (1133)
+++||||+||||||||+++|.|+|+|+ .|.|.+||.|+.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999999887 78999 5899 899999999 322
Q ss_pred cCCCCCCCHHHHHHHHHHcchHHHHhh-cccccCC
Q 041277 1100 YGASDEIDESEIVEAAKAANAHDFIAG-LNEGYDT 1133 (1133)
Q Consensus 1100 ~g~~~~~sdeei~~Al~~a~l~dfI~~-LP~G~dT 1133 (1133)
+ ++ ++ .|+++++|++ || ||||
T Consensus 77 -~-----~~-~~-----~a~l~~~i~~~l~-g~dt 98 (171)
T 2f1r_A 77 -V-----SE-EE-----GNDLDWIYERYLS-DYDL 98 (171)
T ss_dssp -C-----CH-HH-----HTCHHHHHHHHTT-TCSE
T ss_pred -C-----Ch-hh-----hhCHHHHHHhhCC-CCCE
Confidence 1 12 22 8899999999 99 9986
No 172
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.44 E-value=4.3e-16 Score=164.97 Aligned_cols=118 Identities=21% Similarity=0.206 Sum_probs=86.4
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhc-CCCCC
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILF-GKEDA 464 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~-~~~~~ 464 (1133)
.++|++++|+||||||||||+++|+|+++|. | ..+++|+|+.+.++.+..+|+.. .....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999876 4 14778888887777777666531 11010
Q ss_pred CHHHHHHHHHHhchHHHHHhCCCc--ccccccCCCCCCChHHHHHHHHH-HHHhhCCCEEEEeCcc
Q 041277 465 SMEEVIEAAKASNAHNFIRQLPQQ--YDTQVGERGVQMSGGQKQRIAIA-RAIIKAPRILLLDEAT 527 (1133)
Q Consensus 465 ~~~~~~~~~~~~~~~~~i~~l~~g--~~t~~~~~g~~LSgGqkqri~iA-Ral~~~~~illlDE~t 527 (1133)
..+.+...+.+++..++.| +++.+.+++..+|+||+||+++| |+++.++.++++|||.
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0001111223344444444 66778889999999999999998 9999999998899984
No 173
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.42 E-value=3.2e-14 Score=151.53 Aligned_cols=93 Identities=17% Similarity=0.135 Sum_probs=63.5
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh-hHHhhcccccccccccc------
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL-RSLRRHIALVSQEPTLF------ 1090 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l-~~LR~~isiV~Qdp~LF------ 1090 (1133)
.-|+||||+|++|+.+|||||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|+.++|++|+|.+|
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3689999999999999999999999999999999999 6 99999 888765433 34678999999998665
Q ss_pred -----cccHHHHhccCCCCCCCHHHHHHHHHHcc
Q 041277 1091 -----AGTIRENIAYGASDEIDESEIVEAAKAAN 1119 (1133)
Q Consensus 1091 -----~gTIreNI~~g~~~~~sdeei~~Al~~a~ 1119 (1133)
.+++++| .||. +++++.++++...
T Consensus 87 ~~~l~~~~~~~~-~~g~----~~~~i~~~l~~~~ 115 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT----LKSEYDKAKEQNK 115 (218)
T ss_dssp TCEEEEEEETTE-EEEE----EHHHHHHHHHTTC
T ss_pred cchhhhhhcccc-cCCC----cHHHHHHHHhCCC
Confidence 3455566 4543 2456777766543
No 174
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.39 E-value=8.6e-17 Score=167.67 Aligned_cols=166 Identities=14% Similarity=0.075 Sum_probs=108.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCc-cccHHHHHhcCCCCCCHH
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF-ATSIKENILFGKEDASME 467 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eni~~~~~~~~~~ 467 (1133)
|++++|+|||||||||+++.|++ |.+|.+.++|.++... ..+++++|....+ ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68899999999999999999997 6789999998765332 2467788766433 347777775310
Q ss_pred HHHHHHHHhchHHHHHhCCCcccccccC----CCCCC--ChHHHHHHHHHH------HHhhCCCEEEEeCcccCCChHHH
Q 041277 468 EVIEAAKASNAHNFIRQLPQQYDTQVGE----RGVQM--SGGQKQRIAIAR------AIIKAPRILLLDEATSALDSESE 535 (1133)
Q Consensus 468 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~----~g~~L--SgGqkqri~iAR------al~~~~~illlDE~ts~lD~~~~ 535 (1133)
....+ .+. +.=.+...+. .-..+ |+|++|++.++. +++.+|+...+|+ ++|+...
T Consensus 67 --~~~~~-~~~-------~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 67 --VNFLL-AQN-------DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp --HHHHH-TTC-------EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred --HHHHh-cCC-------cEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 00000 000 0000100000 00124 889888988888 8999999888884 7999877
Q ss_pred HHHHHHHHHHh-CCCeEEEEecC-cchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 536 RVVQEALDKAV-VGRTTIIIAHR-LSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 536 ~~i~~~l~~~~-~~~t~i~itH~-~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+. .+.+.... .+.++|.++|. ++.+.. ||+|+ ++|+++..|+++-|-
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 66 77776654 46899999999 998876 99998 999999999887653
No 175
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.39 E-value=8.8e-16 Score=174.21 Aligned_cols=177 Identities=15% Similarity=0.187 Sum_probs=116.2
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH----HHHhh
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL----KWLRS 437 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~----~~~r~ 437 (1133)
+++|++++|+. ..+|+++||++++|++++|+||||||||||++.|+|++.|++|+|.+.|.|+..... ...|.
T Consensus 31 e~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 31 ESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp TCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred eeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 34445556642 248999999999999999999999999999999999999999999999998854321 23467
Q ss_pred hceEEecCCCCccc-------------cHHHHHh-c---CCC---------CCCHHHHHHHHHH-------------hch
Q 041277 438 QMGLVSQEPALFAT-------------SIKENIL-F---GKE---------DASMEEVIEAAKA-------------SNA 478 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-------------ti~eni~-~---~~~---------~~~~~~~~~~~~~-------------~~~ 478 (1133)
++++++|++.+|.. +++|.+. + +.+ ..+...+.+.++. ..+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 89999999988842 2333321 0 000 0011111110000 000
Q ss_pred HHHHHhCCCccc-ccccC-CCCCCChHHHHHHHHHHHHhh------CCCEEEEeCcccCCChHHHHHHHHHHHHH
Q 041277 479 HNFIRQLPQQYD-TQVGE-RGVQMSGGQKQRIAIARAIIK------APRILLLDEATSALDSESERVVQEALDKA 545 (1133)
Q Consensus 479 ~~~i~~l~~g~~-t~~~~-~g~~LSgGqkqri~iARal~~------~~~illlDE~ts~lD~~~~~~i~~~l~~~ 545 (1133)
...+...|.-.- +.+.. ....+|+|++|++..|++++. +|+++. +||+|.+....+.+.|.+.
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 000111221100 11110 113579999999999999987 688886 9999999999998888764
No 176
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.38 E-value=2.3e-14 Score=150.18 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=71.7
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhhhcC-------------CCCCeEEECCcccCCCChhHHhhccccccccccccccc
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLIERFYD-------------PLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGT 1093 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd-------------p~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gT 1093 (1133)
+++|++++||||||||||||+++|.|+|+ |..|+ +||+|+..++.+.+|+.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999997 88898 699999999999999886 7999999999
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHcc
Q 041277 1094 IRENIAYGASDEIDESEIVEAAKAAN 1119 (1133)
Q Consensus 1094 IreNI~~g~~~~~sdeei~~Al~~a~ 1119 (1133)
+++|+ ||. ++++++++++.+.
T Consensus 76 ~~~n~-~g~----~~~~i~~~~~~~~ 96 (198)
T 1lvg_A 76 FSGNL-YGT----SKEAVRAVQAMNR 96 (198)
T ss_dssp ETTEE-EEE----EHHHHHHHHHTTC
T ss_pred ecCcc-CCC----CHHHHHHHHHcCC
Confidence 99998 763 5789999998643
No 177
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.38 E-value=6.9e-13 Score=143.78 Aligned_cols=146 Identities=16% Similarity=0.258 Sum_probs=90.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHh--ccCC-----CccEEEECCeecCC-CCHHHHhhhceEEecCCCCccccHHHH
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQR--FYAP-----LGGEIILDGVSIDK-LQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~--~~~~-----~~G~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
-+++|++++|+||||||||||++.|++ ..+| ..|.+++++.+... .....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 488999999999999999999999999 4554 67889998865311 1123344567766553 4556
Q ss_pred HhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCcccCCChH-
Q 041277 457 ILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII--KAPRILLLDEATSALDSE- 533 (1133)
Q Consensus 457 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~--~~~~illlDE~ts~lD~~- 533 (1133)
+.+..+ .+.++..+. +.-+++++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~-~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 554322 122222111 11112222 589999999999999985
Q ss_pred ------HH-----HHHHHHHHHHh--CCCeEEEEecCcch-------------------hh-cCCEEEEEeCC
Q 041277 534 ------SE-----RVVQEALDKAV--VGRTTIIIAHRLST-------------------IR-NADVIAVVQDG 573 (1133)
Q Consensus 534 ------~~-----~~i~~~l~~~~--~~~t~i~itH~~~~-------------------~~-~~d~i~~l~~G 573 (1133)
.+ ..+...+.++. .|.|+|+++|.... +. .||.+++|++|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 32 23333444432 38999999996543 22 48999999875
No 178
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.37 E-value=4.1e-14 Score=164.29 Aligned_cols=154 Identities=20% Similarity=0.286 Sum_probs=103.4
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC----HHH--HhhhceEEecCCCCcc-c
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ----LKW--LRSQMGLVSQEPALFA-T 451 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~----~~~--~r~~i~~v~Q~~~l~~-~ 451 (1133)
-+++||++++|++++|+|+||||||||+++|+|++.|++|+|.++|.|..... ... .|++|+|++|++.++. .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 36899999999999999999999999999999999999999999887765421 122 3678999999987664 5
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC--CCCCChHHHHHHHHHHHHhh-CC-CEEEEeCcc
Q 041277 452 SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER--GVQMSGGQKQRIAIARAIIK-AP-RILLLDEAT 527 (1133)
Q Consensus 452 ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~--g~~LSgGqkqri~iARal~~-~~-~illlDE~t 527 (1133)
|+++|+.++.... . +.+ + .|| .|.. -.+|-.--+||+.++|++.. .| .++|..+|+
T Consensus 363 tV~e~l~~a~~~~-------------~-DvV--L---IDT-aGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat 422 (503)
T 2yhs_A 363 VIFDAIQAAKARN-------------I-DVL--I---ADT-AGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHHTT-------------C-SEE--E---ECC-CCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG
T ss_pred HHHHHHHHHHhcC-------------C-CEE--E---EeC-CCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence 9999998652100 0 000 0 011 0110 00122223578889998754 46 466666788
Q ss_pred cCCChHHHHHHHHHHHHHhCCCeEEEEec
Q 041277 528 SALDSESERVVQEALDKAVVGRTTIIIAH 556 (1133)
Q Consensus 528 s~lD~~~~~~i~~~l~~~~~~~t~i~itH 556 (1133)
++.|.... .+.+.+ .-+.|.+++||
T Consensus 423 tGq~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 423 TGQNAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp GTHHHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred ccHHHHHH---HHHHHh-hcCCCEEEEEc
Confidence 88655422 111211 23789999999
No 179
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.35 E-value=2.7e-14 Score=159.80 Aligned_cols=100 Identities=13% Similarity=0.203 Sum_probs=80.3
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEE-----------------------eeCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIK-----------------------IEAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~-----------------------I~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
..+.|+++||++.|. |+++++++. +++|+.+||+||||||||||+++|.+++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 356799999999993 467887775 8999999999999999999999999999
Q ss_pred CCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhcc----CCCCCCCHHHHHHHHHHcc
Q 041277 1055 DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAY----GASDEIDESEIVEAAKAAN 1119 (1133)
Q Consensus 1055 dp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~----g~~~~~sdeei~~Al~~a~ 1119 (1133)
+|..|. +++++|+||+++|..|++||+.+ |.|+..+.+.+.+.++..+
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK 166 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC
Confidence 997663 57999999999999999999975 3232333445555555443
No 180
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.34 E-value=9.1e-14 Score=139.24 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=73.4
Q ss_pred EeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccc
Q 041277 1005 QNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVS 1084 (1133)
Q Consensus 1005 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~ 1084 (1133)
+|++++|+ +..+++++||+|++|+.+||+||+|||||||+++|.|+. |++|+|.++|.++.+. ...+ .+|+
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 45566674 235899999999999999999999999999999999999 9999999999998531 1122 2799
Q ss_pred cccccccccHHHHhc-cC
Q 041277 1085 QEPTLFAGTIRENIA-YG 1101 (1133)
Q Consensus 1085 Qdp~LF~gTIreNI~-~g 1101 (1133)
|++.+|.-|+.||+. +|
T Consensus 82 q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 82 YHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEECTTCSCTTHHHHST
T ss_pred eccccccCCcHHHHHHcC
Confidence 999999889999994 45
No 181
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.32 E-value=3e-15 Score=173.51 Aligned_cols=129 Identities=13% Similarity=0.143 Sum_probs=90.6
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC----CHHHHhhhceEEe---------c
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL----QLKWLRSQMGLVS---------Q 444 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~---------Q 444 (1133)
+|+++ + .++|++++|+|||||||||++++|+|+++|++|+|.+.|.++... +...+++++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 4 378999999999999999999999999999999999998877321 1123445666655 9
Q ss_pred CCCCc--c-----ccHHHHHhcCCC---------CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 445 EPALF--A-----TSIKENILFGKE---------DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 445 ~~~l~--~-----~ti~eni~~~~~---------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
+|.++ . .|+++|+.++.. ..+..+..+.+...++.++. ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 99763 2 389999876321 11122333334444433321 124799999999
Q ss_pred HHHHHHhhCCCEEEE
Q 041277 509 AIARAIIKAPRILLL 523 (1133)
Q Consensus 509 ~iARal~~~~~illl 523 (1133)
|||+++.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998753
No 182
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.32 E-value=7.7e-14 Score=160.84 Aligned_cols=109 Identities=16% Similarity=0.245 Sum_probs=92.0
Q ss_pred cccCccEEeeC--CCEEEEEcCCCCCHHHHHHHHhhhcCCCC----CeEEE----CCcccCCCChhHHhhcccccccccc
Q 041277 1019 IFEGFSIKIEA--GKSTALVGQSGSGKSTIIGLIERFYDPLK----GDVKI----DDRDIRSYHLRSLRRHIALVSQEPT 1088 (1133)
Q Consensus 1019 vL~~isl~I~~--Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~----G~I~I----dG~dI~~i~l~~LR~~isiV~Qdp~ 1088 (1133)
+.+.|+++|++ |+++||||+||||||||+++|.|+|+|++ |+|++ +|.++ .++.+++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35789999999 99999999999999999999999999999 99997 46776 6677777 66999999999
Q ss_pred cccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1089 LFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1089 LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+|++|++|||.+++. ...+..++..+...+..+++..++.+
T Consensus 235 ~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ 275 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT-DFITTQAFCIQYEGKAHPFLDSMIKE 275 (365)
T ss_dssp HHHHHHCSSEEEESS-CHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCEEEEeC-CchHHHHHHHHHcCCCCHHHHHHHhh
Confidence 999999999998754 34456677777767777787777654
No 183
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.31 E-value=8.6e-14 Score=151.35 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=96.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH---hccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHHHHHhcC---
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQ---RFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFG--- 460 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~---~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~--- 460 (1133)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...+++++|++.+++. ++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999 999999999988775432 1244556777888776654 888888541
Q ss_pred ----------CCCCCHHHHHHHHHHhchHHHHH--hCCC--cccccccCCCCCCChHHHHHHHHHHHH-hhCCCEEEEe-
Q 041277 461 ----------KEDASMEEVIEAAKASNAHNFIR--QLPQ--QYDTQVGERGVQMSGGQKQRIAIARAI-IKAPRILLLD- 524 (1133)
Q Consensus 461 ----------~~~~~~~~~~~~~~~~~~~~~i~--~l~~--g~~t~~~~~g~~LSgGqkqri~iARal-~~~~~illlD- 524 (1133)
.+ .+.++.....+..... .+. ..|. ..+-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~l~~~~~~~-~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEALDKICEVD-LVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHHHHTTCCCC-EEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred cCCCeEEEECCC-CCHHHHHHHHhhcCCC-EEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 11 1222221111100000 000 0000 001111233457998 66 888 9999999999
Q ss_pred ---CcccCCChHHHHHHHHHHHHHh
Q 041277 525 ---EATSALDSESERVVQEALDKAV 546 (1133)
Q Consensus 525 ---E~ts~lD~~~~~~i~~~l~~~~ 546 (1133)
|||+++|..+++.+.+.++++.
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999998887764
No 184
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.30 E-value=1.2e-13 Score=138.34 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=71.5
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEe
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 443 (1133)
+|++++|+. ..+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++
T Consensus 11 ~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 345666742 35899999999999999999999999999999999999 9999999999887521 1111 2899
Q ss_pred cCCCCccccHHHHHhc
Q 041277 444 QEPALFATSIKENILF 459 (1133)
Q Consensus 444 Q~~~l~~~ti~eni~~ 459 (1133)
|++.+|..|+.||+.+
T Consensus 82 q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECTTCSCTTHHHH
T ss_pred eccccccCCcHHHHHH
Confidence 9998887799999853
No 185
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.28 E-value=1.3e-13 Score=155.66 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=80.3
Q ss_pred EEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccc
Q 041277 1004 LQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALV 1083 (1133)
Q Consensus 1004 f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV 1083 (1133)
|+||+| | .++++++||++++|+.++|+|||||||||++++|.|+++|++|.|+|+|.+ ++.+..+|++++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 778888 7 248999999999999999999999999999999999999999999999986 45555578889988
Q ss_pred ccccccccccHHHHhccC---CC-----CCCCHHHHHHHHHHc
Q 041277 1084 SQEPTLFAGTIRENIAYG---AS-----DEIDESEIVEAAKAA 1118 (1133)
Q Consensus 1084 ~Qdp~LF~gTIreNI~~g---~~-----~~~sdeei~~Al~~a 1118 (1133)
+|. .-+.|.+|+.+ +| ++.+..|++++++.+
T Consensus 223 ~gg----g~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~~ 261 (330)
T 2pt7_A 223 FGG----NITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVL 261 (330)
T ss_dssp CBT----TBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHHH
T ss_pred eCC----ChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHHH
Confidence 761 12666666422 33 244545666666554
No 186
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.27 E-value=7.7e-13 Score=151.99 Aligned_cols=95 Identities=22% Similarity=0.311 Sum_probs=80.6
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCC-CCeEEECCcccCCCChhHHhhccccccc-----ccccccc
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL-KGDVKIDDRDIRSYHLRSLRRHIALVSQ-----EPTLFAG 1092 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~-~G~I~IdG~dI~~i~l~~LR~~isiV~Q-----dp~LF~g 1092 (1133)
+|++++ +++|+.++|||||||||||++++|.|+|+|+ +|+|.++|.++. + .+|+++++|+| +|..|++
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHH
Confidence 677766 8999999999999999999999999999998 899988777764 2 36889999999 9999999
Q ss_pred cHHHHhccCCCC-----CC-CHHHHHHHHHHcch
Q 041277 1093 TIRENIAYGASD-----EI-DESEIVEAAKAANA 1120 (1133)
Q Consensus 1093 TIreNI~~g~~~-----~~-sdeei~~Al~~a~l 1120 (1133)
+|++||+++ |+ +. ++++++.|++.++.
T Consensus 201 ~l~~~L~~~-pd~illdE~~d~e~~~~~l~~~~~ 233 (372)
T 2ewv_A 201 ALRAALRED-PDVIFVGEMRDLETVETALRAAET 233 (372)
T ss_dssp HHHHHTTSC-CSEEEESCCCSHHHHHHHHHHHTT
T ss_pred HHHHHhhhC-cCEEEECCCCCHHHHHHHHHHHhc
Confidence 999999985 52 22 67778888887754
No 187
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.27 E-value=2.4e-13 Score=152.65 Aligned_cols=146 Identities=17% Similarity=0.138 Sum_probs=97.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH----HHhhhc--eEEecCCCCccc-cHHHHH
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK----WLRSQM--GLVSQEPALFAT-SIKENI 457 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~----~~r~~i--~~v~Q~~~l~~~-ti~eni 457 (1133)
..++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+...... .+++++ .+++|++.+++. +++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 4478999999999999999999999999999999999999998766532 234444 499999888765 899999
Q ss_pred hcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHH
Q 041277 458 LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERV 537 (1133)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~ 537 (1133)
.++.. ... +.+ -.|| .|... .-..=.++.-.++|++..++++++||.++. .|
T Consensus 205 ~~~~~-----------~~~---d~v-----liDt-aG~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~------ 256 (328)
T 3e70_C 205 QHAKA-----------RGI---DVV-----LIDT-AGRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NA------ 256 (328)
T ss_dssp HHHHH-----------HTC---SEE-----EEEE-CCSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-TH------
T ss_pred HHHHh-----------ccc---hhh-----HHhh-ccchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HH------
Confidence 75410 000 000 0111 01100 001122344458999998888888885554 22
Q ss_pred HHHHHHHHh--CCCeEEEEecCc
Q 041277 538 VQEALDKAV--VGRTTIIIAHRL 558 (1133)
Q Consensus 538 i~~~l~~~~--~~~t~i~itH~~ 558 (1133)
+.+.++... .+.|.|++||--
T Consensus 257 ~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 257 IVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHHHhcCCCEEEEeCcC
Confidence 223333332 478999999943
No 188
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.27 E-value=1.2e-12 Score=142.70 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=83.6
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCC-CCeEEECCcccCCCChhHHhhcc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL-KGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~-~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
++++|++|. ++|+|+| +++|+.++|+|||||||||++++|.|+++|+ +|+|.++|.|+..+. +..+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 455666542 3899999 9999999999999999999999999999998 999999999987653 4567
Q ss_pred ccccc-----ccccccccHHHHhccCCC----CCC-CHHHHHHHHHHc
Q 041277 1081 ALVSQ-----EPTLFAGTIRENIAYGAS----DEI-DESEIVEAAKAA 1118 (1133)
Q Consensus 1081 siV~Q-----dp~LF~gTIreNI~~g~~----~~~-sdeei~~Al~~a 1118 (1133)
++|+| ++..|..+|+.+|+..++ ++. +.+.++++++.+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~ 120 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAA 120 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHH
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 88999 777889999999988532 233 566666666654
No 189
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.27 E-value=6e-14 Score=164.84 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=81.7
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC-e-EEECCcccCCCChhHHh
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG-D-VKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G-~-I~IdG~dI~~i~l~~LR 1077 (1133)
+-++++||+|+|+ ++||++++|++++|+||||||||||+++|+|++.|++| + |++|| | .|
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~ 178 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQ 178 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TT
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------cc
Confidence 4577888888772 79999999999999999999999999999999999999 9 99998 2 37
Q ss_pred hccccccccccccc----ccHHHHhccCCC---CCCCHHHHHHHHHHcchHH
Q 041277 1078 RHIALVSQEPTLFA----GTIRENIAYGAS---DEIDESEIVEAAKAANAHD 1122 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~----gTIreNI~~g~~---~~~sdeei~~Al~~a~l~d 1122 (1133)
+++++|||++.+|. .|++||+ ++.. ....++.+.++++..++.+
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~ 229 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLER 229 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSS
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCc
Confidence 89999999997664 4899999 7532 1111233444555555544
No 190
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.26 E-value=2.4e-13 Score=158.89 Aligned_cols=98 Identities=13% Similarity=0.246 Sum_probs=84.3
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCc---ccCCCC----
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR---DIRSYH---- 1072 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~---dI~~i~---- 1072 (1133)
+.++++||++.|++ +..+|+++ |+|++||++||+||||||||||+++|.|+++|+.|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 46899999999963 34699999 999999999999999999999999999999999999999999 565432
Q ss_pred -hhHHhhcccccccc--cccccccHHHHhcc
Q 041277 1073 -LRSLRRHIALVSQE--PTLFAGTIRENIAY 1100 (1133)
Q Consensus 1073 -l~~LR~~isiV~Qd--p~LF~gTIreNI~~ 1100 (1133)
...+++.+++|+|+ |.+..-|+.+|+.+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 45689999999994 44556799999865
No 191
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.26 E-value=5.7e-12 Score=145.14 Aligned_cols=147 Identities=12% Similarity=0.192 Sum_probs=95.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHH--HHhccCCCcc-----EEEECCeecC-CCCHHHHhhhceEEecCCCCccccHHHH
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIAL--LQRFYAPLGG-----EIILDGVSID-KLQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~--l~~~~~~~~G-----~i~~~g~~~~-~~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
-|++|++++|+||||||||||++. +.+..+++.| .+++++.+.. ......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 588999999999999999999994 4566666444 8899887631 1223334566776555 57778
Q ss_pred HhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH--hhCCCEEEEeCcccCCChHH
Q 041277 457 ILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI--IKAPRILLLDEATSALDSES 534 (1133)
Q Consensus 457 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal--~~~~~illlDE~ts~lD~~~ 534 (1133)
+.+..+. ..++.. +.+.-++++ -.+|+++++|||++.+|++.
T Consensus 247 i~~~~~~-~~~~~~-----------------------------------~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQL-----------------------------------RLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHHH-----------------------------------HHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHHH-----------------------------------HHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 7765432 222211 112112222 24799999999999999753
Q ss_pred H------------HHHHHHHHHHh--CCCeEEEEecCc-------------------chhhc-CCEEEEEeCCe
Q 041277 535 E------------RVVQEALDKAV--VGRTTIIIAHRL-------------------STIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 535 ~------------~~i~~~l~~~~--~~~t~i~itH~~-------------------~~~~~-~d~i~~l~~G~ 574 (1133)
. ..+.+.|+++. .|.|+|+|+|.. ..+.+ +|.+++|++|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 2 44556666653 389999999982 22344 89999998763
No 192
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.26 E-value=8.7e-12 Score=143.85 Aligned_cols=74 Identities=34% Similarity=0.394 Sum_probs=67.2
Q ss_pred CCCChHHHHHH------HHHHHHhhC-CCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEE
Q 041277 498 VQMSGGQKQRI------AIARAIIKA-PRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 498 ~~LSgGqkqri------~iARal~~~-~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
..||||||||+ ++|||+..+ |+++||||||++||+.....+.+.|.++.++.++|++||+.+....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 58999999988 668999999 99999999999999999999999998876667999999999865569999999
Q ss_pred e
Q 041277 571 Q 571 (1133)
Q Consensus 571 ~ 571 (1133)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 193
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.25 E-value=1.6e-12 Score=146.53 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=80.0
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-CCccEEEEC-CeecCCCCHHHHhhhceEEecCCCCccc-cHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-PLGGEIILD-GVSIDKLQLKWLRSQMGLVSQEPALFAT-SIK 454 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-~~~G~i~~~-g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~ 454 (1133)
-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.+.. ...+.++++++|++.++.. +++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 47788875 4899999999999999999999999999 999999987 75542 1234579999999988865 899
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 455 ENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 455 eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
++-. .....+++.+. ..++++.+ |+....+....+|| ||+||++||+++
T Consensus 280 e~~l---~~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGL---WHLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCC---CCCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhh---cCCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 8632 23344443221 12222222 23333444556899 999999999875
No 194
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.24 E-value=3.4e-14 Score=169.12 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=115.2
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcc-ccHHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKE 455 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~e 455 (1133)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+. +..++++.|...... .|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 46889999999999999999999999999999999999999999999865222211 345777777665222 27777
Q ss_pred HHhcC---CC------CCCHHHHHHHHHHhc-------------hHHHHHhC---CCccccccc-------CCCCCCChH
Q 041277 456 NILFG---KE------DASMEEVIEAAKASN-------------AHNFIRQL---PQQYDTQVG-------ERGVQMSGG 503 (1133)
Q Consensus 456 ni~~~---~~------~~~~~~~~~~~~~~~-------------~~~~i~~l---~~g~~t~~~-------~~g~~LSgG 503 (1133)
++... .| +.+..+...+.+.+. +.+.+.++ |.+....+. .....+|||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 76432 12 233344444443322 22333332 222221111 123357999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEE--EecCcchhhc-CC
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTII--IAHRLSTIRN-AD 565 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~--itH~~~~~~~-~d 565 (1133)
||||.++|. + | |++||+.+.+.+.+.+.++. .++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999987751 1 6 99999987776666665553 4788875 8999998764 53
No 195
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=8.3e-12 Score=143.47 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=79.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh-ccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCc-cccHHHHHhcCCCCCCHHH
Q 041277 391 TVALVGGSGSGKSTVIALLQR-FYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF-ATSIKENILFGKEDASMEE 468 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eni~~~~~~~~~~~ 468 (1133)
.+.|+||+|+||||++++++| ++.|+.|++.++|.+...... .+..+++++|++++. +.+- .+. .....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 389999999999999999999 899999999999987654322 256799999988652 1110 011 11112
Q ss_pred HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCC
Q 041277 469 VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVG 548 (1133)
Q Consensus 469 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~ 548 (1133)
+.+..+. +.... +++..+ +||| +..+|+++|+|||++ ||+.+...+.+.+.+..++
T Consensus 109 ~~~~i~~-----~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLKE-----VAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHHH-----HTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHH-----HHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 2222211 11111 111111 4666 778999999999999 9999999999999887778
Q ss_pred CeEEEEecCcchh
Q 041277 549 RTTIIIAHRLSTI 561 (1133)
Q Consensus 549 ~t~i~itH~~~~~ 561 (1133)
.++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999998643
No 196
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.22 E-value=3.7e-14 Score=156.31 Aligned_cols=143 Identities=19% Similarity=0.174 Sum_probs=102.9
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCC-CCcc-ccHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEP-ALFA-TSIK 454 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-~l~~-~ti~ 454 (1133)
.+++++++++++| ++|+||||||||||+++|+|.+.+ |.|.++|.++........++++++++|++ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 3789999999999 999999999999999999999887 79999999887666666677899999986 3443 3677
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccC-----
Q 041277 455 ENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA----- 529 (1133)
Q Consensus 455 eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~----- 529 (1133)
||+....+.....+. . ...+...+++ ..|||||+||+.+++|+..+|++| |||+.-
T Consensus 110 Deid~~~~~r~~~~~-~-----~~~~~~~~~l-----------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRET-G-----ASVRVVNQLL-----------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHHHHHH-----------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcc-h-----HHHHHHHHHH-----------HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 887654332111110 0 0111122222 368999999999999999999975 999752
Q ss_pred -------CChHHHHHHHHHH
Q 041277 530 -------LDSESERVVQEAL 542 (1133)
Q Consensus 530 -------lD~~~~~~i~~~l 542 (1133)
-|.+.+..|.+.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 2555555565544
No 197
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.21 E-value=3.1e-12 Score=140.19 Aligned_cols=82 Identities=22% Similarity=0.170 Sum_probs=49.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccc-cHHHHhccCCCC--CCCH
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGASD--EIDE 1108 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~g-TIreNI~~g~~~--~~sd 1108 (1133)
++|||||||||||||+++|+|+..|++|+|.++|.++.. ...|+.+++|+|++.++.. |+.||+.||... ....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998743 3457899999999998866 999999998631 1122
Q ss_pred HHHHHHHH
Q 041277 1109 SEIVEAAK 1116 (1133)
Q Consensus 1109 eei~~Al~ 1116 (1133)
+.+.+.++
T Consensus 81 ~~i~~~~~ 88 (270)
T 3sop_A 81 EPIEKYIN 88 (270)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555554
No 198
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.20 E-value=1.9e-11 Score=121.32 Aligned_cols=91 Identities=15% Similarity=0.255 Sum_probs=69.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc--EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG--EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKE 455 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G--~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 455 (1133)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 45666 8999999999999999999999999987 46 555554332110
Q ss_pred HHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHH
Q 041277 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESE 535 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~ 535 (1133)
+++.+|++|++|||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2356899999999998 666667
Q ss_pred HHHHHHHHHHh-CCCe-EEEEecC
Q 041277 536 RVVQEALDKAV-VGRT-TIIIAHR 557 (1133)
Q Consensus 536 ~~i~~~l~~~~-~~~t-~i~itH~ 557 (1133)
+.+.+.+.... +|++ +|++||+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 78888887754 4788 7777775
No 199
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.18 E-value=4.5e-12 Score=141.02 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=68.4
Q ss_pred cCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC----hhHH--hhcccccccccc-cc-cc
Q 041277 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH----LRSL--RRHIALVSQEPT-LF-AG 1092 (1133)
Q Consensus 1021 ~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~----l~~L--R~~isiV~Qdp~-LF-~g 1092 (1133)
+++||++++|+.++|||||||||||+++.|.+++.|++|+|.++|.|+.... +..+ |.++++|+|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 5688999999999999999999999999999999999999999999987653 2344 458999999997 65 45
Q ss_pred cHHHHhccC
Q 041277 1093 TIRENIAYG 1101 (1133)
Q Consensus 1093 TIreNI~~g 1101 (1133)
|++||+.++
T Consensus 171 ~v~e~l~~~ 179 (302)
T 3b9q_A 171 VLSKAVKRG 179 (302)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899999753
No 200
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.17 E-value=7.9e-12 Score=128.81 Aligned_cols=111 Identities=17% Similarity=0.156 Sum_probs=75.8
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCC
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE 462 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~ 462 (1133)
+|++++|+.++|+||+|+|||||++++++.+.|.+|.. +.|+ +..+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~------ 78 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDL------ 78 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHH------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHH------
Confidence 56788899999999999999999999999987766631 1111 11111
Q ss_pred CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc-CCChHHHHHHHHH
Q 041277 463 DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS-ALDSESERVVQEA 541 (1133)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts-~lD~~~~~~i~~~ 541 (1133)
.+.... .... + ... -+...+.+|++|+||||++ ++|+.....+.+.
T Consensus 79 -------~~~~~~-----~~~~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 79 -------IFRLKH-----LMDE---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -------HHHHHH-----HHHH---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -------HHHHHH-----HhcC---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 111100 0000 0 000 1122355999999999996 8999999999998
Q ss_pred HHHHh-CCCeEEEEecCcc
Q 041277 542 LDKAV-VGRTTIIIAHRLS 559 (1133)
Q Consensus 542 l~~~~-~~~t~i~itH~~~ 559 (1133)
+.... +++++|++||...
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 87764 6899999999864
No 201
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.16 E-value=2.6e-12 Score=148.12 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=75.5
Q ss_pred ccccCccEEeeCCC--------------------EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHh
Q 041277 1018 MIFEGFSIKIEAGK--------------------STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge--------------------~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
.+|+||||+|++|+ .+||+||||||||||+++|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 48999999999999 99999999999999999999999999999999998763 2
Q ss_pred hcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHH
Q 041277 1078 RHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHD 1122 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~d 1122 (1133)
.++|+|++...+-|++||+.++.+ ++.+.++++..++.+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYE 148 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGG
T ss_pred --eEEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCc
Confidence 288999986567899999988743 224667777777654
No 202
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.15 E-value=2.4e-12 Score=143.73 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=80.4
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEE---CCeecCCCCHHHHh-hhceEEecCCCCc------cccH
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL---DGVSIDKLQLKWLR-SQMGLVSQEPALF------ATSI 453 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~---~g~~~~~~~~~~~r-~~i~~v~Q~~~l~------~~ti 453 (1133)
+++.+|++++++||||||||||+|+|. +.+|+.|+|.+ +|.++..... ..+ +.+|||+|+|.+. ..|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 355689999999999999999999999 99999999999 9988765432 222 3699999999652 3478
Q ss_pred HHHH--hcC--------C----C-CCCHHHHHHHHHHhchHH-HHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 454 KENI--LFG--------K----E-DASMEEVIEAAKASNAHN-FIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 454 ~eni--~~~--------~----~-~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
||+ .|+ . + ......+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 453 0 1 112345777777777754 444444 368998899999987
No 203
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.10 E-value=1.5e-11 Score=139.19 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=69.3
Q ss_pred cCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC----hhHH--hhcccccccccc-cc-cc
Q 041277 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH----LRSL--RRHIALVSQEPT-LF-AG 1092 (1133)
Q Consensus 1021 ~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~----l~~L--R~~isiV~Qdp~-LF-~g 1092 (1133)
+.+||++++|+.++|||||||||||+++.|.+++.|++|+|.++|.|+.... +..+ |.++++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578899999999999999999999999999999999999999999986643 2344 568999999987 54 56
Q ss_pred cHHHHhccC
Q 041277 1093 TIRENIAYG 1101 (1133)
Q Consensus 1093 TIreNI~~g 1101 (1133)
|++||+.++
T Consensus 228 tv~e~l~~~ 236 (359)
T 2og2_A 228 VLSKAVKRG 236 (359)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 899999753
No 204
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.10 E-value=7.4e-12 Score=132.16 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=49.2
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC-hhHHhhcccccccccccccc-cHH
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH-LRSLRRHIALVSQEPTLFAG-TIR 1095 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~-l~~LR~~isiV~Qdp~LF~g-TIr 1095 (1133)
+||+| .+|++||.+||+||||||||||+++|.|+++ .|.+++ ++...+ ....|+.+++++|++.+|.. |++
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcc-cccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 58899 7999999999999999999999999999995 355554 222211 12346789999999988764 455
Q ss_pred HHh
Q 041277 1096 ENI 1098 (1133)
Q Consensus 1096 eNI 1098 (1133)
+|+
T Consensus 83 ~~l 85 (207)
T 1znw_A 83 GEL 85 (207)
T ss_dssp TCE
T ss_pred CCc
Confidence 555
No 205
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.09 E-value=5.9e-12 Score=144.76 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=64.8
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCE--EEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKS--TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~--vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~ 1078 (1133)
.+++++ +++|++ .+ |+|+||++++|+. +|||||||||||||+++|+|+. ++|.++...+....|+
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 456666 788853 34 8999999999999 9999999999999999999983 5677776655555678
Q ss_pred cccccccccccc-cccHHHHhccCC
Q 041277 1079 HIALVSQEPTLF-AGTIRENIAYGA 1102 (1133)
Q Consensus 1079 ~isiV~Qdp~LF-~gTIreNI~~g~ 1102 (1133)
.+++|+|++.++ .-|+.||+.+|.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhh
Confidence 999999999887 569999999885
No 206
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.09 E-value=2e-11 Score=141.90 Aligned_cols=81 Identities=25% Similarity=0.306 Sum_probs=69.7
Q ss_pred cCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC----hhH--Hhhcccccccccccc-ccc
Q 041277 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH----LRS--LRRHIALVSQEPTLF-AGT 1093 (1133)
Q Consensus 1021 ~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~----l~~--LR~~isiV~Qdp~LF-~gT 1093 (1133)
+++||++++|+.++|||+|||||||+++.|.+++.|++|+|.++|.|+.... +.. .|+++++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5788999999999999999999999999999999999999999988875431 233 478899999998755 678
Q ss_pred HHHHhccC
Q 041277 1094 IRENIAYG 1101 (1133)
Q Consensus 1094 IreNI~~g 1101 (1133)
+++||.++
T Consensus 364 V~e~l~~a 371 (503)
T 2yhs_A 364 IFDAIQAA 371 (503)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999865
No 207
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.09 E-value=1.6e-11 Score=133.71 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=80.5
Q ss_pred CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHh---hhcCCCCCeEE--------ECCccc-CCCChhHHhhcccccc
Q 041277 1017 VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE---RFYDPLKGDVK--------IDDRDI-RSYHLRSLRRHIALVS 1084 (1133)
Q Consensus 1017 ~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~---R~ydp~~G~I~--------IdG~dI-~~i~l~~LR~~isiV~ 1084 (1133)
..++++.+ ++|++|||+||+||||||++++|. |++.|++|.|. .+|.++ ....+..+++++++++
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 34555554 899999999999999999999999 99999999999 999999 4667889999999999
Q ss_pred cc------cccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcc
Q 041277 1085 QE------PTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLN 1128 (1133)
Q Consensus 1085 Qd------p~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP 1128 (1133)
|+ .+++..++.+||+ .+++.+++..+..++.|.+..
T Consensus 94 ~~~~~~~~~~l~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~l 135 (252)
T 4e22_A 94 VSQNGQLQVILEGEDVSNEIR--------TETVGNTASQAAAFPRVREAL 135 (252)
T ss_dssp EEETTEEEEEETTEECTTGGG--------SHHHHHHHHHHTTSHHHHHHH
T ss_pred ecCCCCceEEECCeehhHHHH--------HHHHHHHHHHhcccHHHHHHH
Confidence 54 5688889999984 236777777777777775543
No 208
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.09 E-value=5.8e-12 Score=132.30 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=50.7
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccc
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEP 1087 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp 1087 (1133)
.+|+|| ++||.+||+||||||||||+++|.|+ +|++|+|. +.++.. +...+|+++++|||+|
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC--
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH
Confidence 588985 89999999999999999999999999 99999994 334432 3335688999999998
No 209
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.08 E-value=4.6e-11 Score=129.55 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=50.9
Q ss_pred CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHH
Q 041277 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIR 1095 (1133)
Q Consensus 1016 ~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIr 1095 (1133)
+.++|+|+||++++|+.+||+||+||||||++++|.+++ |.+.+| ..++.+++|+||++...-|.+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 446899999999999999999999999999999999987 666665 368899999999855456899
Q ss_pred HHhcc
Q 041277 1096 ENIAY 1100 (1133)
Q Consensus 1096 eNI~~ 1100 (1133)
+|+++
T Consensus 77 ~~~~~ 81 (245)
T 2jeo_A 77 QKAKA 81 (245)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 98764
No 210
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.07 E-value=6.8e-12 Score=140.81 Aligned_cols=92 Identities=14% Similarity=0.201 Sum_probs=78.5
Q ss_pred cccEEEEeEEEECCCCCCCccccCccEEe-------------------eCCCEEEEEcCCCCCHHHHHHHHhhhcC--CC
Q 041277 999 TGNIELQNVHFAYPARPDVMIFEGFSIKI-------------------EAGKSTALVGQSGSGKSTIIGLIERFYD--PL 1057 (1133)
Q Consensus 999 ~g~I~f~nVsF~Y~~~~~~~vL~~isl~I-------------------~~Ge~vaIVG~SGSGKSTL~~LL~R~yd--p~ 1057 (1133)
.+.|+++||++.|. ++++++++++ ++|+.+||+|+|||||||++++|.+++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 46799999999992 4899999998 9999999999999999999999999999 99
Q ss_pred CCeEEE---CCcccCCCChhHHhhcccccccccccc-cccHHHHhcc
Q 041277 1058 KGDVKI---DDRDIRSYHLRSLRRHIALVSQEPTLF-AGTIRENIAY 1100 (1133)
Q Consensus 1058 ~G~I~I---dG~dI~~i~l~~LR~~isiV~Qdp~LF-~gTIreNI~~ 1100 (1133)
+|+|.+ ||.+.. ...|+.+++| |+..++ +-|+.+|+.+
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 999999 998852 3457889999 776554 4478888754
No 211
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.07 E-value=2.3e-12 Score=146.07 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=74.8
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC----hhHHh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH----LRSLR 1077 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~----l~~LR 1077 (1133)
|+.+|++++|. ...+|+++||++++|+.+||+|++|||||||++.|.+++.|++|+|.|.|.|+.... ....|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 45566777774 235899999999999999999999999999999999999999999999999986543 23468
Q ss_pred hccccccccccccc
Q 041277 1078 RHIALVSQEPTLFA 1091 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~ 1091 (1133)
+++++|+|+|.+|.
T Consensus 107 ~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 107 TRMARLAIDRNAFI 120 (337)
T ss_dssp GGSTTGGGCTTEEE
T ss_pred hhheeeccCccccc
Confidence 89999999999985
No 212
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.03 E-value=4.1e-13 Score=144.52 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=23.3
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHH-hccCC
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQ-RFYAP 415 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~-~~~~~ 415 (1133)
...+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 3578999999999999999999999999999999 99843
No 213
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.03 E-value=6e-11 Score=132.51 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=71.6
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE---CCcccCCCChhHHhhcccccccccc-------------
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI---DDRDIRSYHLRSLRRHIALVSQEPT------------- 1088 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I---dG~dI~~i~l~~LR~~isiV~Qdp~------------- 1088 (1133)
|++.+|+.++|+||||||||||+++|.++..|++|+|.+ +|.++........++++++|+|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567789999999999999999999999999999999999 9999876542221247999999985
Q ss_pred ---ccc-ccHHHHhccCCC--CCCCHHHHHHHHHHcch-HHHHhhccc
Q 041277 1089 ---LFA-GTIRENIAYGAS--DEIDESEIVEAAKAANA-HDFIAGLNE 1129 (1133)
Q Consensus 1089 ---LF~-gTIreNI~~g~~--~~~sdeei~~Al~~a~l-~dfI~~LP~ 1129 (1133)
||. -|+ +|++++.. ..-.++.+.++++..++ .+...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 343 377 99988531 11234579999999999 477666664
No 214
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.00 E-value=5.9e-11 Score=132.59 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=70.0
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEE---CCeecCCCCHHHHhhhceEEecCCC-------------
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL---DGVSIDKLQLKWLRSQMGLVSQEPA------------- 447 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~------------- 447 (1133)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ +|.++.........+.+|+|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 566789999999999999999999999999999999999 9988866542111246999999985
Q ss_pred ---Cccc-cHHHHHhcCCC---CCCHHHHHHHHHHhch-HHHHHhCCC
Q 041277 448 ---LFAT-SIKENILFGKE---DASMEEVIEAAKASNA-HNFIRQLPQ 487 (1133)
Q Consensus 448 ---l~~~-ti~eni~~~~~---~~~~~~~~~~~~~~~~-~~~i~~l~~ 487 (1133)
+|+. |+ +|+.|+.. .....++.++++..++ .+..++.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 3544 78 99988531 1234568888888888 466666663
No 215
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.99 E-value=2.3e-10 Score=127.27 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=62.5
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC----hhHH--hhccccccccccccc-ccHHHHhcc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH----LRSL--RRHIALVSQEPTLFA-GTIRENIAY 1100 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~----l~~L--R~~isiV~Qdp~LF~-gTIreNI~~ 1100 (1133)
.+|+.++|||||||||||+++.|.+++.|++|+|.++|.|+.... +..+ |.++++|+|++.++. .|+++|+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999987654 2333 467999999998775 478888864
No 216
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.97 E-value=6.2e-11 Score=137.09 Aligned_cols=154 Identities=17% Similarity=0.202 Sum_probs=90.8
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHh
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENIL 458 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~ 458 (1133)
-++++|+++.|+.++|+|+||||||||++.|++..+ .+.+.+...+ ...+++|.|+.. ...++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 478999999999999999999999999999999743 3444443332 235677776541 0112222211
Q ss_pred cCC-----CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChH
Q 041277 459 FGK-----EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533 (1133)
Q Consensus 459 ~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~ 533 (1133)
+.. ...... ..+..+.+. ..+.. +|-. .+...+||+||+||+++||+|..+|.|+++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~--~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTR--VLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSS--EEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHHH--hhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 100 001111 111111110 00110 1100 122346999999999999999999999999 999997
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEec
Q 041277 534 SERVVQEALDKAV-VGRTTIIIAH 556 (1133)
Q Consensus 534 ~~~~i~~~l~~~~-~~~t~i~itH 556 (1133)
.+..+.+..+... .+.+++.+|.
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 6633333333332 3667776654
No 217
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.95 E-value=2.7e-11 Score=135.92 Aligned_cols=140 Identities=17% Similarity=0.189 Sum_probs=97.5
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEe-------------------eCCCEEEEEcCCCCcHHHHHHHHHhccC--CC
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTI-------------------PAGKTVALVGGSGSGKSTVIALLQRFYA--PL 416 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i-------------------~~g~~~~ivG~sGsGKSTll~~l~~~~~--~~ 416 (1133)
.+.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 45799999999993 4899999988 8999999999999999999999999999 99
Q ss_pred ccEEEE---CCeecCCCCHHHHhhhceEEecCCCCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCccccc
Q 041277 417 GGEIIL---DGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492 (1133)
Q Consensus 417 ~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 492 (1133)
+|+|.+ ||.+.. . ..++.++++ |+..++. .|+.+|+.+... ...-.+ -...|. ++.
T Consensus 110 ~G~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~------------l~~~~~-~i~~P~-~~~- 169 (308)
T 1sq5_A 110 HRRVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFVSD------------LKSGVP-NVTAPV-YSH- 169 (308)
T ss_dssp CCCEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHH------------HTTTCS-CEEECC-EET-
T ss_pred CCeEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHHHH------------HhCCCC-ceeccc-ccc-
Confidence 999999 887642 2 345678999 7766543 378887764210 000000 001221 221
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCCh
Q 041277 493 VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532 (1133)
Q Consensus 493 ~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~ 532 (1133)
+.+ +|+..+.+.+.+|+++|+|.|....|.
T Consensus 170 --------~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 170 --------LIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp --------TTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred --------ccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 111 233323345567899999999988774
No 218
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.94 E-value=1.9e-10 Score=121.74 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=60.9
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccc---cHHHHhc--cC
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG---TIRENIA--YG 1101 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~g---TIreNI~--~g 1101 (1133)
.++|+.+||+|+|||||||++++|.+++.| ++++|+||+++|+. |+++|+. ++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999999975 68999999999864 4666654 44
Q ss_pred CCCCCCHHHHHHHHHHcchHHHHhh
Q 041277 1102 ASDEIDESEIVEAAKAANAHDFIAG 1126 (1133)
Q Consensus 1102 ~~~~~sdeei~~Al~~a~l~dfI~~ 1126 (1133)
.|...+.+.+.++++..++.+++..
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM 85 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC
Confidence 4444556788888888877766543
No 219
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.94 E-value=2.9e-11 Score=147.76 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=59.6
Q ss_pred cEEEEeEEEECCCCCCCccccCc----------cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC-CCCeEEECCcccC
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGF----------SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP-LKGDVKIDDRDIR 1069 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~i----------sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp-~~G~I~IdG~dI~ 1069 (1133)
.|+++|+++.|+.. ..++|+.+ +++++. +|||||||||||||+++|.|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58999999999531 12344444 366665 999999999999999999999989 7999999999963
Q ss_pred CC---ChhHHhhccccccccccccc-ccHHHHhcc
Q 041277 1070 SY---HLRSLRRHIALVSQEPTLFA-GTIRENIAY 1100 (1133)
Q Consensus 1070 ~i---~l~~LR~~isiV~Qdp~LF~-gTIreNI~~ 1100 (1133)
.. ....+|+++++|+|++.+|+ .|+++||.+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~ 120 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK 120 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHH
Confidence 22 24578999999999998865 589999854
No 220
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.94 E-value=1e-09 Score=115.36 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=56.2
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHHHHHh
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENIL 458 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eni~ 458 (1133)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++........+..++|++|++.+|.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57788999999999999999999999999974 588888887765544456789999999988765 6666654
No 221
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.91 E-value=3.9e-10 Score=116.33 Aligned_cols=82 Identities=23% Similarity=0.346 Sum_probs=69.3
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcC-------------CCCCeEEECCcccCCCChhHHhhcccccccccccccc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYD-------------PLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG 1092 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd-------------p~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~g 1092 (1133)
...+|+.++|+||||||||||+++|.+.++ |..|+ +||+|..-++.+.+++.+ .|+.+|+.+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~ 89 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFG 89 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEE
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhh
Confidence 345899999999999999999999999986 77887 799999999999999876 699999999
Q ss_pred cHHHHhccCCCCCCCHHHHHHHHHH
Q 041277 1093 TIRENIAYGASDEIDESEIVEAAKA 1117 (1133)
Q Consensus 1093 TIreNI~~g~~~~~sdeei~~Al~~ 1117 (1133)
++.+|. ||.| .+++.+++++
T Consensus 90 ~~~~n~-YGt~----~~~v~~~l~~ 109 (197)
T 3ney_A 90 SYQGNM-FGTK----FETVHQIHKQ 109 (197)
T ss_dssp EETTEE-EEEE----HHHHHHHHHT
T ss_pred hhhcee-cccc----hhhHHHHHhc
Confidence 999994 8854 3455555543
No 222
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.91 E-value=3.3e-10 Score=132.49 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=64.6
Q ss_pred EEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH-------
Q 041277 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS------- 1075 (1133)
Q Consensus 1003 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~------- 1075 (1133)
.+.++++.+ ..+|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.++|.++...+...
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~ 81 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYG 81 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGG
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHH
Confidence 456666543 1379999999999 999999999999999999999999999999999999998665432
Q ss_pred -Hhhcccccccccc
Q 041277 1076 -LRRHIALVSQEPT 1088 (1133)
Q Consensus 1076 -LR~~isiV~Qdp~ 1088 (1133)
++..+.++.+++.
T Consensus 82 ~~~~~~~~~~~~~~ 95 (483)
T 3euj_A 82 KLKAGVCYAVLETV 95 (483)
T ss_dssp GSCSSEEEEEEEEE
T ss_pred hcCCCceEEEEehh
Confidence 2334566767654
No 223
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.90 E-value=6.7e-10 Score=123.41 Aligned_cols=111 Identities=17% Similarity=0.298 Sum_probs=77.8
Q ss_pred eeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCC
Q 041277 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGK 461 (1133)
Q Consensus 382 i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~ 461 (1133)
++++.++|++++|+||+||||||++..|++.+.+..|+|.+.+.|... .+ ..+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------~~------------a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------AA------------AIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------HH------------HHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------HH------------HHH------
Confidence 455677899999999999999999999999999998999887766421 00 011
Q ss_pred CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH---HHHHHHhhCCCEEEEeCcccCCChHHHHHH
Q 041277 462 EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI---AIARAIIKAPRILLLDEATSALDSESERVV 538 (1133)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri---~iARal~~~~~illlDE~ts~lD~~~~~~i 538 (1133)
++...++..+ +| . + ...|||+.|++ +++||+..+|+++|+|+|.. ......+
T Consensus 150 ------qL~~~~~~~g-------l~----~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l 204 (306)
T 1vma_A 150 ------QLKIWGERVG-------AT----V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNL 204 (306)
T ss_dssp ------HHHHHHHHHT-------CE----E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHH
T ss_pred ------HHHHHHHHcC-------Cc----E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHH
Confidence 1111222211 21 1 1 24689999999 99999999999999999974 3444444
Q ss_pred HHHHHH
Q 041277 539 QEALDK 544 (1133)
Q Consensus 539 ~~~l~~ 544 (1133)
++.+.+
T Consensus 205 ~~eL~~ 210 (306)
T 1vma_A 205 MEELRK 210 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 224
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.90 E-value=4.2e-10 Score=125.62 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=70.4
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE---CCcccCCCChhHHh-hccccccccccc------ccccHH
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI---DDRDIRSYHLRSLR-RHIALVSQEPTL------FAGTIR 1095 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I---dG~dI~~i~l~~LR-~~isiV~Qdp~L------F~gTIr 1095 (1133)
++.+|++++|+||||||||||+++|. +.+|++|+|.+ +|.++..... ..+ +.+++|+|+|-+ .+-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45679999999999999999999999 99999999999 9998876442 223 479999999954 34578
Q ss_pred HHh--ccC---------C---CCCCCHHHHHHHHHHcchHH-HHhhcc
Q 041277 1096 ENI--AYG---------A---SDEIDESEIVEAAKAANAHD-FIAGLN 1128 (1133)
Q Consensus 1096 eNI--~~g---------~---~~~~sdeei~~Al~~a~l~d-fI~~LP 1128 (1133)
||+ .++ . +..-..+.+.+|++..++.+ ..++.|
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 285 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL 285 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence 888 443 0 11112457899999999975 555444
No 225
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.89 E-value=1.6e-10 Score=122.47 Aligned_cols=90 Identities=14% Similarity=0.070 Sum_probs=66.9
Q ss_pred cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC--CCCeEEECCcccCCCChhHHhhcccccccccccccc-cH----HH
Q 041277 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP--LKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TI----RE 1096 (1133)
Q Consensus 1024 sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp--~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~g-TI----re 1096 (1133)
.-+.++|+.++|+||||||||||+++|.++++| ..|+|.++|.+.+. ..++.++|+||++.+|.. |. .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346799999999999999999999999999986 68999999987653 246789999999999976 44 58
Q ss_pred HhccCCC-CCCCHHHHHHHHHH
Q 041277 1097 NIAYGAS-DEIDESEIVEAAKA 1117 (1133)
Q Consensus 1097 NI~~g~~-~~~sdeei~~Al~~ 1117 (1133)
|+.+... -..+.+++.++++.
T Consensus 86 ~~~~~~~~yg~~~~~v~~~l~~ 107 (219)
T 1s96_A 86 HAEVFGNYYGTSREAIEQVLAT 107 (219)
T ss_dssp EEEETTEEEEEEHHHHHHHHTT
T ss_pred HHHHHhccCCCCHHHHHHHHhc
Confidence 8876321 11245567766653
No 226
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.87 E-value=7.8e-10 Score=129.35 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=50.5
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~ 431 (1133)
+|+|+||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 79999999999 999999999999999999999999999999999999887554
No 227
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.86 E-value=1.7e-10 Score=127.71 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=44.9
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEE---CCeecCCCCHHHHhhhceEEecCCCCcc-----ccHHH
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL---DGVSIDKLQLKWLRSQMGLVSQEPALFA-----TSIKE 455 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-----~ti~e 455 (1133)
+++.+|++++|+||||+|||||+|+|.|+..|..|+|.+ +|+++.... ...+..++|++|.|.+.. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 887775432 122223899999997653 478 8
Q ss_pred HHh
Q 041277 456 NIL 458 (1133)
Q Consensus 456 ni~ 458 (1133)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 983
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.85 E-value=2.8e-09 Score=118.25 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=90.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCH
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASM 466 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~ 466 (1133)
++|++++++||+||||||++..|++.+.+++| +++.++.+|++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999988778 14677777763 333333332
Q ss_pred HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh
Q 041277 467 EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546 (1133)
Q Consensus 467 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~ 546 (1133)
..++..+ +|. ... ..++..+.+++++ .+|+++|+| |+++|+..+..+.+..+-..
T Consensus 155 ----~~~~~~g-------l~~----~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 155 ----TYAELLQ-------APL----EVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp ----HHHTTTT-------CCC----CBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred ----HHHHhcC-------CCe----Eec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 1111111 111 111 1234457777764 999999999 99999877666655443322
Q ss_pred ---CCCeEEEE--ecCcchhhc-CCEEEEEeCCeEEe
Q 041277 547 ---VGRTTIII--AHRLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 547 ---~~~t~i~i--tH~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
.+.+++++ +|..+.+.. +|++..++.+.++-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23345555 898777765 77766666677765
No 229
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.85 E-value=6.5e-11 Score=126.75 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=97.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhcc---CCCccEEEE--------CCeecCC-CCHHHHhhhceEEecCC------CCc
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFY---APLGGEIIL--------DGVSIDK-LQLKWLRSQMGLVSQEP------ALF 449 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~---~~~~G~i~~--------~g~~~~~-~~~~~~r~~i~~v~Q~~------~l~ 449 (1133)
.+.+++|+||+||||||++++|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++ .+.
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35689999999999999999999887 788899887 6777653 44567888999999986 344
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccc-cCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc
Q 041277 450 ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV-GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528 (1133)
Q Consensus 450 ~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 528 (1133)
..++.+++. .+++..++..+..++.+.....+..+.+ .++|.-++|+ .++++++.+++++++.++..
T Consensus 84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 557777763 3567777778888888777665555544 3456677776 45667788999999988753
No 230
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.85 E-value=3.9e-09 Score=117.14 Aligned_cols=132 Identities=19% Similarity=0.163 Sum_probs=91.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
+.++++++.|+.. . ++++|+ +|++++++|++|+||||++..|++.+.+..|+|.+.+.|+..-...
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------- 142 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-------
Confidence 4456667777532 1 678888 9999999999999999999999999999999999988776421100
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
+. .....+.. .+| -... +..-...+-+|.+++++...++++
T Consensus 143 --------------~q------------l~~~~~~~-------~l~----~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 143 --------------EQ------------LRLLGEKV-------GVP----VLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp --------------HH------------HHHHHHHH-------TCC----EEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred --------------HH------------HHHhcccC-------CeE----EEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 00 00001111 111 1100 011234456789999998899999
Q ss_pred EEEeCc-ccCCChHHHHHHHHHHHHH
Q 041277 521 LLLDEA-TSALDSESERVVQEALDKA 545 (1133)
Q Consensus 521 lllDE~-ts~lD~~~~~~i~~~l~~~ 545 (1133)
+|+|+| ++++|......+.+..+..
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999988777777666554
No 231
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.84 E-value=9e-12 Score=138.00 Aligned_cols=136 Identities=23% Similarity=0.240 Sum_probs=94.4
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++.+......++++++
T Consensus 51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 34555555642 24899999999999 99999999999999999999886 7999999987755544455667888
Q ss_pred EecCCC-Ccc-ccHHHHHh-cCCCCCC-----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 442 VSQEPA-LFA-TSIKENIL-FGKEDAS-----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 442 v~Q~~~-l~~-~ti~eni~-~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
++|++. .+. -++.||+. ++..... .++..+ .+..+. ..|||||+||+.+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~---------~~~~ll-----------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ---------TLNQLL-----------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHH---------HHHHHH-----------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHH---------HHHHHH-----------HHHhCCCCCCCEEEEE
Confidence 888864 333 36677773 3321110 111111 112221 1489999999999999
Q ss_pred HhhCCCEEEEeCc
Q 041277 514 IIKAPRILLLDEA 526 (1133)
Q Consensus 514 l~~~~~illlDE~ 526 (1133)
+..+|++ +|++
T Consensus 184 ~t~~p~~--ld~~ 194 (278)
T 1iy2_A 184 ATNRPDI--LDPA 194 (278)
T ss_dssp EESCTTS--SCHH
T ss_pred ecCCchh--CCHh
Confidence 9999986 4544
No 232
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.84 E-value=9.4e-10 Score=113.15 Aligned_cols=82 Identities=15% Similarity=0.190 Sum_probs=65.9
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCC-CCCeEE----------ECCcccCCCChhHHhhcccccccccccccccHHH
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDP-LKGDVK----------IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRE 1096 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp-~~G~I~----------IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIre 1096 (1133)
.+|+.++|+||||||||||+++|.+++++ ..|.|. +||+|...++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36899999999999999999999999863 334443 58889888999998874 67999999999999
Q ss_pred HhccCCCCCCCHHHHHHHHHH
Q 041277 1097 NIAYGASDEIDESEIVEAAKA 1117 (1133)
Q Consensus 1097 NI~~g~~~~~sdeei~~Al~~ 1117 (1133)
| .||.+ .+++.++++.
T Consensus 80 n-~yg~~----~~~i~~~l~~ 95 (180)
T 1kgd_A 80 A-MYGTK----LETIRKIHEQ 95 (180)
T ss_dssp E-EEEEE----HHHHHHHHHT
T ss_pred c-ccccc----HHHHHHHHHC
Confidence 9 57643 4566666653
No 233
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.83 E-value=4.1e-10 Score=120.51 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhc---CCCCCeEEE--------CCcccC-CCChhHHhhccccccccc------cccc
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFY---DPLKGDVKI--------DDRDIR-SYHLRSLRRHIALVSQEP------TLFA 1091 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~y---dp~~G~I~I--------dG~dI~-~i~l~~LR~~isiV~Qdp------~LF~ 1091 (1133)
+.+|||+|++||||||++++|.+.| .++.|+|.. +|.|+. +..+.++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999988 778899988 788876 366788999999999987 5677
Q ss_pred ccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1092 GTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1092 gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
.++.+|++ ++++.+++..+++|++|...+.
T Consensus 85 ~~v~~~~~--------~~~~~~~~~~~~~~~~v~~~~~ 114 (227)
T 1cke_A 85 EDVSGEIR--------TQEVANAASQVAAFPRVREALL 114 (227)
T ss_dssp EECHHHHT--------SHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeCchhhC--------CHHHHHHHHHhcCCHHHHHHHH
Confidence 78888872 4589999999999999887544
No 234
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.82 E-value=7.3e-12 Score=143.34 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=108.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHh------------ccCCCccEEEECCeecCCCCH-HHHhhhc---eEEecCCCC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQR------------FYAPLGGEIILDGVSIDKLQL-KWLRSQM---GLVSQEPAL 448 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~------------~~~~~~G~i~~~g~~~~~~~~-~~~r~~i---~~v~Q~~~l 448 (1133)
.+++|..++|+|++|+|||||+++|.| ..+|+.|.+.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 567999999998854321100 0001112 356677766
Q ss_pred ccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeC
Q 041277 449 FAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP--RILLLDE 525 (1133)
Q Consensus 449 ~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~--~illlDE 525 (1133)
..+ +..|++ . ......++.+.. +...-+..+ ......+||+. || +++++||
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~d~---il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAVDA---IYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTCSE---EEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHHHH---HHHHHhccc---cceeeeecccc------------Ccchhhhhchh
Confidence 543 322222 0 111111111110 000000000 12223456653 89 9999999
Q ss_pred cccCCChHHHHHHHHHHHHH-hC-CCeEEEEecCcchhhc-CCEEE-EEeCC-eEEeecCcc
Q 041277 526 ATSALDSESERVVQEALDKA-VV-GRTTIIIAHRLSTIRN-ADVIA-VVQDG-QVMETGSHD 582 (1133)
Q Consensus 526 ~ts~lD~~~~~~i~~~l~~~-~~-~~t~i~itH~~~~~~~-~d~i~-~l~~G-~i~~~g~~~ 582 (1133)
|++.+|++..+...+.+... .+ |+|+ ++|.+..+.. ||++. +|++| +++..|+.+
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 99999999988888888776 44 5664 3999988766 99999 99999 888766543
No 235
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.82 E-value=2.6e-12 Score=146.22 Aligned_cols=154 Identities=18% Similarity=0.205 Sum_probs=97.2
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCC-------CEEEEEcCCCCcHHHHHHHHHhcc----CCCccEEEECCeecCCCCH
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAG-------KTVALVGGSGSGKSTVIALLQRFY----APLGGEIILDGVSIDKLQL 432 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g-------~~~~ivG~sGsGKSTll~~l~~~~----~~~~G~i~~~g~~~~~~~~ 432 (1133)
++++..|+. ..+++++++.+++| +.++|+||+|+|||||+++|++.+ .+.+|.+..++.++.....
T Consensus 22 ~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 22 KSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp SSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred ccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 344444543 24899999999877 899999999999999999999998 6778887776665532211
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCCCC------HHHHHHHHHHhchHHHHHhCCC-cccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKEDAS------MEEVIEAAKASNAHNFIRQLPQ-QYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~-g~~t~~~~~g~~LSgGqk 505 (1133)
...+..|.++.|...++. ++.|++........ .... .+. +.. .+|. ++.. ...+...||+|+|
T Consensus 99 ~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~---~~~--i~~---~l~~~~li~-at~~~~~Ls~~l~ 168 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPS---AKS--IRI---DIQPFTLVG-ATTRSGLLSSPLR 168 (334)
T ss_dssp HCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEE-EESCGGGSCHHHH
T ss_pred HccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcc---ccc--ccc---cCCCeEEEE-ecCCcccCCHHHH
Confidence 111356999999887765 78787742111000 0000 000 001 1111 1111 1223357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~ 546 (1133)
||++++ .+||+.+...+.+.+++..
T Consensus 169 sR~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 169 SRFGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp TTCSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred HhcCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 998655 7888888888888887654
No 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.82 E-value=1.1e-09 Score=122.85 Aligned_cols=76 Identities=20% Similarity=0.172 Sum_probs=65.0
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh----hHHhhccc--cccccccccc-ccHHHHh
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL----RSLRRHIA--LVSQEPTLFA-GTIRENI 1098 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l----~~LR~~is--iV~Qdp~LF~-gTIreNI 1098 (1133)
..++|+.++|||||||||||+++.|.+++.|++|+|.++|.|+..... ..++++++ +++|++.++. .|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999999977663 34566666 8999988775 5899998
Q ss_pred ccC
Q 041277 1099 AYG 1101 (1133)
Q Consensus 1099 ~~g 1101 (1133)
.++
T Consensus 205 ~~~ 207 (328)
T 3e70_C 205 QHA 207 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 237
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.81 E-value=7e-10 Score=125.64 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=59.8
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCccc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI 1068 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI 1068 (1133)
.-++.+||++.|+. +..+|+++ |+|.+||++||+|++|||||||+++|.|+.+|+.|.|.++|.+.
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~ 109 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG 109 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH
Confidence 35889999999963 34689999 99999999999999999999999999999999999999999763
No 238
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.81 E-value=1.7e-10 Score=130.12 Aligned_cols=98 Identities=15% Similarity=0.200 Sum_probs=66.0
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcC-CCCCeEEEC-CcccCCCChhHHhhcccccccccccccc-cHH
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-PLKGDVKID-DRDIRSYHLRSLRRHIALVSQEPTLFAG-TIR 1095 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd-p~~G~I~Id-G~dI~~i~l~~LR~~isiV~Qdp~LF~g-TIr 1095 (1133)
-++++++. .+|+++||+|+||||||||+++|.++.. |..|+|.++ |.+.. ...++++++|||++.|++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 36777775 4899999999999999999999999999 999999997 77653 2456789999999998865 899
Q ss_pred HHhccCCCCCCCHHHHH----HHHHHcchHHHHh
Q 041277 1096 ENIAYGASDEIDESEIV----EAAKAANAHDFIA 1125 (1133)
Q Consensus 1096 eNI~~g~~~~~sdeei~----~Al~~a~l~dfI~ 1125 (1133)
++-.. ..+.+++. ++++.+++.+|-.
T Consensus 280 e~~l~----~l~~~e~~~~~~e~l~~~gl~~f~~ 309 (358)
T 2rcn_A 280 EFGLW----HLEPEQITQGFVEFHDYLGHCKYRD 309 (358)
T ss_dssp TCCCC----CCCHHHHHHTSGGGGGGTTCSSSTT
T ss_pred Hhhhc----CCCHHHHHHHHHHHHHHcCCchhcC
Confidence 96322 23444443 4455556555543
No 239
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.80 E-value=1.5e-11 Score=134.33 Aligned_cols=137 Identities=22% Similarity=0.238 Sum_probs=94.6
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|++... .|.+.++|.++.+......++.+++
T Consensus 27 ~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 27 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 45566666642 24899999999999 99999999999999999999886 7999999987755444455667888
Q ss_pred EecCCC-Ccc-ccHHHHH-hcCCCCC-----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 442 VSQEPA-LFA-TSIKENI-LFGKEDA-----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 442 v~Q~~~-l~~-~ti~eni-~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
++|+.. .+. -++.||+ .++.... ..++..+ .+..+. ..|||||+||+.+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~---------~~~~ll-----------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ---------TLNQLL-----------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHH---------HHHHHH-----------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHH---------HHHHHH-----------HHHhCCCCCCCEEEEE
Confidence 888763 333 3666776 3332111 0111111 111111 1478999999999999
Q ss_pred HhhCCCEEEEeCcc
Q 041277 514 IIKAPRILLLDEAT 527 (1133)
Q Consensus 514 l~~~~~illlDE~t 527 (1133)
+..+|++ +|++.
T Consensus 160 ~t~~p~~--ld~~l 171 (254)
T 1ixz_A 160 ATNRPDI--LDPAL 171 (254)
T ss_dssp EESCGGG--SCGGG
T ss_pred ccCCchh--CCHHH
Confidence 9999986 56654
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.80 E-value=1.7e-09 Score=113.58 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=57.8
Q ss_pred cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccc-cHHHHh
Q 041277 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENI 1098 (1133)
Q Consensus 1024 sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~g-TIreNI 1098 (1133)
|+++++|+.+||+||||||||||+++|.+++ | .+.++|.++...+....+..+++++|++.+|.. +..+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 6788999999999999999999999999997 3 689999988877766678899999999998865 444444
No 241
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.79 E-value=9.6e-10 Score=127.22 Aligned_cols=91 Identities=20% Similarity=0.180 Sum_probs=56.9
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
+.|+++||+++|+. ..+++|+||+| +|||+||||||||++.|++...|..| .+|.++...+ ...++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 56999999999963 35899999998 99999999999999999999876555 2455443221 122467
Q ss_pred ccccccccccc-cccHHHHhccCCC
Q 041277 1080 IALVSQEPTLF-AGTIRENIAYGAS 1103 (1133)
Q Consensus 1080 isiV~Qdp~LF-~gTIreNI~~g~~ 1103 (1133)
+++++|++.++ .-||.||+.++..
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp EECC------CEEEEEEECC-----
T ss_pred EEEEEecCCcccceeeeechhhhhh
Confidence 99999998876 6799999988753
No 242
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.78 E-value=1.4e-09 Score=127.69 Aligned_cols=81 Identities=14% Similarity=0.259 Sum_probs=69.8
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcC--------------------------------------CCCCe
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD--------------------------------------PLKGD 1060 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd--------------------------------------p~~G~ 1060 (1133)
+|+++||++++| .++|||+||||||||+++|..+.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 689999999999 999999999999999999966653 44788
Q ss_pred EEECCcccCCCChhHHhhc-ccccccccccccccHHHHhcc
Q 041277 1061 VKIDDRDIRSYHLRSLRRH-IALVSQEPTLFAGTIRENIAY 1100 (1133)
Q Consensus 1061 I~IdG~dI~~i~l~~LR~~-isiV~Qdp~LF~gTIreNI~~ 1100 (1133)
+++||.+++..++.++++. +++++|++.++-.+-.++..+
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ 169 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGL 169 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHH
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHH
Confidence 9999999987778888887 799999999888776655544
No 243
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.78 E-value=7.2e-10 Score=120.55 Aligned_cols=97 Identities=21% Similarity=0.199 Sum_probs=72.0
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHH---hccCCCccEEE--------ECCeecC-CCCHHHHhhhceEEecC
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQ---RFYAPLGGEII--------LDGVSID-KLQLKWLRSQMGLVSQE 445 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~---~~~~~~~G~i~--------~~g~~~~-~~~~~~~r~~i~~v~Q~ 445 (1133)
++++.+ ++|++++|+|||||||||++++|+ |++.|++|.+. .+|.++. ......+++++++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 9999984 45677899999999975
Q ss_pred C------CCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHh
Q 041277 446 P------ALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQ 484 (1133)
Q Consensus 446 ~------~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 484 (1133)
+ .++..++.+|+.. +++..++.....++.+..
T Consensus 96 ~~~~~~~~l~~~~v~~~i~~-------~~v~~~~s~~~~~~~vr~ 133 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIRT-------ETVGNTASQAAAFPRVRE 133 (252)
T ss_dssp ETTEEEEEETTEECTTGGGS-------HHHHHHHHHHTTSHHHHH
T ss_pred CCCCceEEECCeehhHHHHH-------HHHHHHHHHhcccHHHHH
Confidence 3 4556688887652 345455544444444443
No 244
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.77 E-value=1.3e-09 Score=120.46 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCC--C
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDE--I 1106 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~--~ 1106 (1133)
++..|||+|+|||||||++++|.+++++. | . . |+.+.+|+||+++|++++++|+.++.++. .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 56789999999999999999999999874 2 1 1 56677779999999999999997753210 0
Q ss_pred CHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1107 DESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1107 sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+....-++.+.+.+.+++.+|++|++|
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t 120 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEH 120 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC----
T ss_pred hhccCcchhHHHHHHHHHHHhhccCcc
Confidence 000011122234567888889888754
No 245
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.77 E-value=2.5e-10 Score=132.21 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=72.7
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC----CChhHHhhcccccc---------c
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS----YHLRSLRRHIALVS---------Q 1085 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~----i~l~~LR~~isiV~---------Q 1085 (1133)
+|+++ + .++|+.++|+|||||||||++++|.+++.|++|+|.++|.++.. ++...+++++++++ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 55665 4 37999999999999999999999999999999999999988732 11234556676655 9
Q ss_pred ccccc--c-----ccHHHHhccCCC--------CCCCHHHHHHHHHHcchHHH
Q 041277 1086 EPTLF--A-----GTIRENIAYGAS--------DEIDESEIVEAAKAANAHDF 1123 (1133)
Q Consensus 1086 dp~LF--~-----gTIreNI~~g~~--------~~~sdeei~~Al~~a~l~df 1123 (1133)
+|.++ . -|+++|+.++.. +..+..+..+.++..++.++
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~ 288 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF 288 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH
Confidence 99763 2 388888875321 11122345556666666554
No 246
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.76 E-value=5.3e-10 Score=117.95 Aligned_cols=84 Identities=17% Similarity=0.296 Sum_probs=51.3
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhc-----CCCCCeEEE-------CCcccC
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY-----DPLKGDVKI-------DDRDIR 1069 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y-----dp~~G~I~I-------dG~dI~ 1069 (1133)
|+++|++|+|+ .++|++ |++++|++|+|||++|||||||++.|.+.. .|+.|.+.+ ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 247888 899999999999999999999999999988 888888765 333332
Q ss_pred CCC-----------hhHHhhccccccccccccc
Q 041277 1070 SYH-----------LRSLRRHIALVSQEPTLFA 1091 (1133)
Q Consensus 1070 ~i~-----------l~~LR~~isiV~Qdp~LF~ 1091 (1133)
+.+ .+.+|+.++.+.|++..++
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQ 110 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhccc
Confidence 211 2456777888887654433
No 247
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.76 E-value=1.1e-09 Score=121.19 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=58.4
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE---CCcccCCCChhHHhhccccccccccccc-----ccHHH
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI---DDRDIRSYHLRSLRRHIALVSQEPTLFA-----GTIRE 1096 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I---dG~dI~~i~l~~LR~~isiV~Qdp~LF~-----gTIre 1096 (1133)
+++.+|++++|+|+||+|||||+++|.++..|..|+|.+ +|.++.... +..+..+++|+|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 356689999999999999999999999999999999999 898876532 222223899999997654 477 9
Q ss_pred Hhc--cC------------C--CCCCCHHHHHHHHHHcchHHH
Q 041277 1097 NIA--YG------------A--SDEIDESEIVEAAKAANAHDF 1123 (1133)
Q Consensus 1097 NI~--~g------------~--~~~~sdeei~~Al~~a~l~df 1123 (1133)
||. +. + ...-.+..+.+|++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 983 21 0 111124578899999988653
No 248
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.76 E-value=2e-09 Score=111.68 Aligned_cols=70 Identities=26% Similarity=0.235 Sum_probs=57.1
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhcc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAY 1100 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~ 1100 (1133)
.+++|+.++|+|++||||||++++|.+. |..|.|.+||.++..... -++.+++++|++. .+.|+++|+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~ 74 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAAD 74 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHH
Confidence 4789999999999999999999999998 678999999988744321 1456899999876 56788888854
No 249
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.76 E-value=3.5e-08 Score=111.96 Aligned_cols=143 Identities=23% Similarity=0.356 Sum_probs=85.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE-EECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI-ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKED 463 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~ 463 (1133)
-+++|+++.|.||+|||||||+..++.......|.+ +++... ..+. ...+++|+.+|+.. +..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~-----------i~~-- 120 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLL-----------VSQ-- 120 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCE-----------EEC--
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeE-----------Eec--
Confidence 578999999999999999999888876554444443 333321 0111 11222332222111 000
Q ss_pred CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC--CCEEEEeCcccCC----------C
Q 041277 464 ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA--PRILLLDEATSAL----------D 531 (1133)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~--~~illlDE~ts~l----------D 531 (1133)
..+. .|-+.++++++++ |+++++||+++.+ |
T Consensus 121 -----------------------------------~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd 163 (349)
T 2zr9_A 121 -----------------------------------PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGD 163 (349)
T ss_dssp -----------------------------------CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC---
T ss_pred -----------------------------------CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccccc
Confidence 0111 2334578888765 9999999999998 3
Q ss_pred h---HHHHHHHHHHHHH-----hCCCeEEEEecCcc----------------hhhc-CCEEEEEeCCeEEeecC
Q 041277 532 S---ESERVVQEALDKA-----VVGRTTIIIAHRLS----------------TIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 532 ~---~~~~~i~~~l~~~-----~~~~t~i~itH~~~----------------~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
+ ...+.+.+.++++ ..+.|+|+++|-.. .+++ ||.++.++.+++...|+
T Consensus 164 ~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 164 SHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2 1222344444433 24899999999543 1444 89999998887766554
No 250
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.76 E-value=1e-09 Score=113.46 Aligned_cols=127 Identities=19% Similarity=0.375 Sum_probs=55.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccC-------------CCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHH
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYA-------------PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKE 455 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 455 (1133)
|++++|+||||||||||+++|+|+++ |..|++ +|.++...+...++..+. |+..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~~---~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIK---NNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHHH---TTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHHh---hcceeeEEEEec
Confidence 67899999999999999999999998 777775 776665555554444321 333333333333
Q ss_pred HHhcCCCCCCHHHHHHHHHH----------hchHHHHHh--------------CCCcccccccCCCCCCChHHHHHHHHH
Q 041277 456 NILFGKEDASMEEVIEAAKA----------SNAHNFIRQ--------------LPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~----------~~~~~~i~~--------------l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
|+ +|.+ .+++.+.++. .++.. +.. -++.+...+.++|..-....+||++-|
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~ 150 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 150 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHHHH-HHTCGGGCCEEEEEECSCC-------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 32 3322 2222222221 11111 111 113444556667777777888899988
Q ss_pred HHHh-----hCCCEEEEeC
Q 041277 512 RAII-----KAPRILLLDE 525 (1133)
Q Consensus 512 Ral~-----~~~~illlDE 525 (1133)
+.-+ ..++.+|..+
T Consensus 151 ~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 151 QAELAYAETGAHDKVIVND 169 (186)
T ss_dssp --------CCCCSEEEECS
T ss_pred HHHHHhhcccCCcEEEECc
Confidence 8755 5567777665
No 251
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.75 E-value=5.9e-09 Score=112.82 Aligned_cols=166 Identities=17% Similarity=0.146 Sum_probs=89.1
Q ss_pred cccce-eEEeeCCCEEEEEcCCCCcHHHHHHHH-HhccCCCccEEEECCeecCCCCHHHHh---hhceEEecCCCCcccc
Q 041277 378 IFKDF-CLTIPAGKTVALVGGSGSGKSTVIALL-QRFYAPLGGEIILDGVSIDKLQLKWLR---SQMGLVSQEPALFATS 452 (1133)
Q Consensus 378 ~l~~i-~l~i~~g~~~~ivG~sGsGKSTll~~l-~~~~~~~~G~i~~~g~~~~~~~~~~~r---~~i~~v~Q~~~l~~~t 452 (1133)
.|+++ .--+++|++++|+||+|||||||+..+ .+..+...+.+++++.. +...++ +++++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 46666 567899999999999999999995544 55555444555555432 223322 345555543210
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCcccCC
Q 041277 453 IKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII--KAPRILLLDEATSAL 530 (1133)
Q Consensus 453 i~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~--~~~~illlDE~ts~l 530 (1133)
.+|+.+-.. ... .+...+. .+..+-+. +....+....++.++ .+|+++++|++++-+
T Consensus 83 -~~~l~~~~~--~~~-------------~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 83 -KGMFAMVDA--FTA-------------GIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp -HTSEEEEEC--STT-------------TTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGT
T ss_pred -CCcEEEEec--chh-------------hcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhh
Confidence 001111000 000 0000000 00000010 112333334444444 579999999999988
Q ss_pred --ChHHHHHHHHHHHHH--hCCCeEEEEecCcch--------h-hcCCEEEEEeC
Q 041277 531 --DSESERVVQEALDKA--VVGRTTIIIAHRLST--------I-RNADVIAVVQD 572 (1133)
Q Consensus 531 --D~~~~~~i~~~l~~~--~~~~t~i~itH~~~~--------~-~~~d~i~~l~~ 572 (1133)
|+.....+...+.+. ..|.|+|+++|.... + ..||.|+.|+.
T Consensus 142 ~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 142 INKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 554334444444433 248899999998764 3 34899999975
No 252
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.75 E-value=1.7e-09 Score=116.06 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=49.5
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHh-hhc------------CCCCCeEEECCcccCCCChhHHhhccccccc
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE-RFY------------DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQ 1085 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~-R~y------------dp~~G~I~IdG~dI~~i~l~~LR~~isiV~Q 1085 (1133)
..+++||++++|+.+||+|||||||||++++|. +++ +|..|++ +|++....+.+.++.. +.+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hhc
Confidence 568999999999999999999999999999999 999 7777765 7777766666665543 346
Q ss_pred ccccccccHHHHhccCC
Q 041277 1086 EPTLFAGTIRENIAYGA 1102 (1133)
Q Consensus 1086 dp~LF~gTIreNI~~g~ 1102 (1133)
+.+++.+++.+|+ ||.
T Consensus 91 ~~~~~~~~~~~~~-~~~ 106 (231)
T 3lnc_A 91 GEIIEHAEVFGNF-YGV 106 (231)
T ss_dssp TCEEEEEEETTEE-EEE
T ss_pred Cceehhhhhcccc-CCC
Confidence 6666666666665 443
No 253
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.69 E-value=3.4e-10 Score=117.70 Aligned_cols=141 Identities=21% Similarity=0.191 Sum_probs=76.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCC-----------CccEEEECCeecCC--CCHHHHhhhceEEecCCCCcc--ccHHH
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAP-----------LGGEIILDGVSIDK--LQLKWLRSQMGLVSQEPALFA--TSIKE 455 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~-----------~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~~l~~--~ti~e 455 (1133)
.++|+|++|||||||++.+.|...+ ..|+|.++|.++.- ++....++..++++|...-.. -++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57999999976531 111111122233333110000 01111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhchHHHHHh-CCCcc-cccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChH
Q 041277 456 NILFGKEDASMEEVIEAAKASNAHNFIRQ-LPQQY-DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~-~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~ 533 (1133)
+... .+.+++....+. +.. -+... --.++.+ ..|..-..+...+||+++.+|+++++| ||++|..
T Consensus 111 ~~~~----~s~~~~~~~~~~------~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 IAKH----LTYENVERWLKE------LRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp TTCH----HHHHTHHHHHHH------HHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred CcCH----HHHHHHHHHHHH------HHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 1000 001111111110 111 00000 0112221 123222234578899999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q 041277 534 SERVVQEALDK 544 (1133)
Q Consensus 534 ~~~~i~~~l~~ 544 (1133)
+...+.+.|.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 98888887754
No 254
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.68 E-value=5.9e-09 Score=124.07 Aligned_cols=98 Identities=22% Similarity=0.223 Sum_probs=73.9
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccc--cHH
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG--TIR 1095 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~g--TIr 1095 (1133)
.+++++++.+++|+.++|+|||||||||++++|+++++|++|.|.|+|.+--.++ . +.+++++.|++. ..+ |++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~--~-~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY--H-ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC--C-SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC--C-CCeEEEEeeccc-ccCCcCHH
Confidence 4789999999999999999999999999999999999999999999987632222 1 456777777766 332 666
Q ss_pred HHhccC---CC-----CCCCHHHHHHHHHHcc
Q 041277 1096 ENIAYG---AS-----DEIDESEIVEAAKAAN 1119 (1133)
Q Consensus 1096 eNI~~g---~~-----~~~sdeei~~Al~~a~ 1119 (1133)
++++.. +| ++.+++|...+++.++
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~ 355 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMS 355 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHH
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhc
Confidence 665432 23 2566667777766653
No 255
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.68 E-value=8.4e-10 Score=130.03 Aligned_cols=164 Identities=15% Similarity=0.186 Sum_probs=92.6
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh--ccCCCccEEEECCeecCCCCHHHHhh--h-ceEEecCCCCccccHHH
Q 041277 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQR--FYAPLGGEIILDGVSIDKLQLKWLRS--Q-MGLVSQEPALFATSIKE 455 (1133)
Q Consensus 381 ~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~--~~~~~~G~i~~~g~~~~~~~~~~~r~--~-i~~v~Q~~~l~~~ti~e 455 (1133)
.+++++.++..+.|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. + .+.|.+++. -+.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~----~a~~ 234 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMK----DAAN 234 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHH----HHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHH----HHHH
Confidence 4788999999999999999999999999876 67777788888777766533222211 0 111111110 0111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH----------HHHHHHhhCCC-EEEEe
Q 041277 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI----------AIARAIIKAPR-ILLLD 524 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri----------~iARal~~~~~-illlD 524 (1133)
.+..-. ...++-.+.++..++.++- +|+..+. ..+||||+||. ++|+++...|. ++++|
T Consensus 235 ~L~~~~--~EmerR~~ll~~~Gv~~i~-----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvID 304 (512)
T 2ius_A 235 ALRWCV--NEMERRYKLMSALGVRNLA-----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVD 304 (512)
T ss_dssp HHHHHH--HHHHHHHHHHHHTTCSSHH-----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEE
T ss_pred HHHHHH--HHHHHHHHHHHHcCCccHH-----HHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEEEEEe
Confidence 111000 0000111112222111100 1111111 14788888752 46777788898 79999
Q ss_pred CcccCCChHHHHHHHHHHHHH----h-CCCeEEEEecCcc
Q 041277 525 EATSALDSESERVVQEALDKA----V-VGRTTIIIAHRLS 559 (1133)
Q Consensus 525 E~ts~lD~~~~~~i~~~l~~~----~-~~~t~i~itH~~~ 559 (1133)
|+++.+|.. .+.+.+.+.++ + .|.++|++|||++
T Consensus 305 E~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 305 EFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp THHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred CHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999998843 23344444432 2 2789999999987
No 256
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.66 E-value=8.7e-09 Score=117.21 Aligned_cols=107 Identities=19% Similarity=0.231 Sum_probs=80.8
Q ss_pred EeEEEECCCCCCCccccCc-cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhc--CCCC----Ce-EEECCcccCCCChhHH
Q 041277 1005 QNVHFAYPARPDVMIFEGF-SIKIEAGKSTALVGQSGSGKSTIIGLIERFY--DPLK----GD-VKIDDRDIRSYHLRSL 1076 (1133)
Q Consensus 1005 ~nVsF~Y~~~~~~~vL~~i-sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y--dp~~----G~-I~IdG~dI~~i~l~~L 1076 (1133)
+.+++.++ .|+++ ++.|++|+.++|+||+|||||||++.+++.+ +|++ |+ |+||+.+.- .
T Consensus 111 ~~isTG~~------~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~ 178 (349)
T 1pzn_A 111 GRISTGSK------SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------R 178 (349)
T ss_dssp CEECCSCH------HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------C
T ss_pred CeecCCCH------HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------C
Confidence 34555552 35555 6899999999999999999999999999999 6665 68 999998762 3
Q ss_pred hhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhc
Q 041277 1077 RRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGL 1127 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~L 1127 (1133)
++++++++|++.++..|+.+||.+.++ .+.++..+.++. +..++.++
T Consensus 179 ~~~i~~i~q~~~~~~~~v~~ni~~~~~--~~~~~~~~~l~~--~~~~~~~l 225 (349)
T 1pzn_A 179 PERIREIAQNRGLDPDEVLKHIYVARA--FNSNHQMLLVQQ--AEDKIKEL 225 (349)
T ss_dssp HHHHHHHHHTTTCCHHHHGGGEEEEEC--CSHHHHHHHHHH--HHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHhhCEEEEec--CChHHHHHHHHH--HHHHHHHh
Confidence 678999999999999999999998743 333344444443 34455544
No 257
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.66 E-value=9.9e-09 Score=109.78 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=59.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC-------CCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHh
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDP-------LKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp-------~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI 1098 (1133)
-|++||.++|+||||||||||++.|.+.+.| ..|.|++++.+.. + +++++.++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997766 4458888887631 1 3568888999888888999999
Q ss_pred ccCCC
Q 041277 1099 AYGAS 1103 (1133)
Q Consensus 1099 ~~g~~ 1103 (1133)
.+..+
T Consensus 95 ~~~~~ 99 (231)
T 4a74_A 95 YVARA 99 (231)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 88643
No 258
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.65 E-value=7.5e-10 Score=117.26 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=50.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-------
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL------- 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~------- 432 (1133)
.|+++|++..|+ . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~---------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA---------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE---------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC---------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888765442 1 566666 8999999999999999999999999999999999998844322
Q ss_pred -HHHhhhceEEecC
Q 041277 433 -KWLRSQMGLVSQE 445 (1133)
Q Consensus 433 -~~~r~~i~~v~Q~ 445 (1133)
...+..++||+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 1235679999984
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.64 E-value=1.1e-08 Score=107.68 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=46.4
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhc
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIA 1099 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~ 1099 (1133)
.++|++|||+||||||||||+++|.++++|+ | ..+++|+||.+.++.+.++|+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~ 72 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRG 72 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhc
Confidence 5789999999999999999999999999986 4 3577888888888888777763
No 260
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.64 E-value=9e-09 Score=104.78 Aligned_cols=30 Identities=33% Similarity=0.362 Sum_probs=28.0
Q ss_pred CccEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1022 ~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
|+||++++||.++|+|||||||||+++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999999999999999743
No 261
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.63 E-value=2.6e-09 Score=110.18 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccc
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEP 1087 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp 1087 (1133)
|++++|+||+||||||++++|.++++ ++| |.+||.++.++ ..+|+++++++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec
Confidence 79999999999999999999999999 999 99999998654 45799999999985
No 262
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.63 E-value=8e-10 Score=117.06 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=52.9
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC--------
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH-------- 1072 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~-------- 1072 (1133)
.++++|+...|. . ++++++ +.++|+||||||||||+++|.++..|++|+|.+||.++...+
T Consensus 9 ~l~l~~~~~~~~--------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE--------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC--------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488888865552 1 456666 899999999999999999999999999999999999984433
Q ss_pred hhHHhhcccccccc
Q 041277 1073 LRSLRRHIALVSQE 1086 (1133)
Q Consensus 1073 l~~LR~~isiV~Qd 1086 (1133)
....|.++++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 23357889999986
No 263
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.63 E-value=1.3e-08 Score=115.60 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=75.6
Q ss_pred EeEEEECCCCCCCccccCccE-------EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCC-CCeEEECCcccCCCChhHH
Q 041277 1005 QNVHFAYPARPDVMIFEGFSI-------KIEAGKSTALVGQSGSGKSTIIGLIERFYDPL-KGDVKIDDRDIRSYHLRSL 1076 (1133)
Q Consensus 1005 ~nVsF~Y~~~~~~~vL~~isl-------~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~-~G~I~IdG~dI~~i~l~~L 1076 (1133)
.+++|||... ..+.|+++.+ .+++|+.++|+|||||||||++++|.++++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 6788998643 3467888887 78899999999999999999999999999997 57776555444 333 3
Q ss_pred hhcccccccccccc-----cccHHHHhccCCC----CCCCHHHHHHHHHH
Q 041277 1077 RRHIALVSQEPTLF-----AGTIRENIAYGAS----DEIDESEIVEAAKA 1117 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF-----~gTIreNI~~g~~----~~~sdeei~~Al~~ 1117 (1133)
+...++|+|.+.-. ...|+.-|+..++ ++.+|.|..+.+..
T Consensus 167 ~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp~d~e~~~~~~~ 216 (356)
T 3jvv_A 167 ESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALT 216 (356)
T ss_dssp CCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCCCSHHHHHHHHH
T ss_pred hccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCCCCCHHHHHHHHH
Confidence 45677888876533 3345555554321 45667676665433
No 264
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.62 E-value=5.1e-08 Score=115.38 Aligned_cols=176 Identities=11% Similarity=0.114 Sum_probs=109.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc-EEEECCeecCCCCHHHHhhhc-eEEecCCCCccccHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG-EIILDGVSIDKLQLKWLRSQM-GLVSQEPALFATSIKE 455 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G-~i~~~g~~~~~~~~~~~r~~i-~~v~Q~~~l~~~ti~e 455 (1133)
.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+-+. +.+...+++++ +....- . .+
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~------~-~~ 261 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNI------N-AQ 261 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTC------C-HH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCC------C-HH
Confidence 68888888999999999999999999999999988776555 5655443 23444444432 111000 0 11
Q ss_pred HHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCcccCCChH
Q 041277 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII--KAPRILLLDEATSALDSE 533 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~--~~~~illlDE~ts~lD~~ 533 (1133)
.+.-| ..+.++..+..+.. +.+...|- .+.+ ...+|++|.+ +.+|++. .+|+++++|+++.-.+..
T Consensus 262 ~l~~g--~l~~~~~~~~~~a~---~~l~~~~l----~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~ 329 (454)
T 2r6a_A 262 NLRTG--KLTPEDWGKLTMAM---GSLSNAGI----YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSG 329 (454)
T ss_dssp HHHTS--CCCHHHHHHHHHHH---HHHHSSCE----EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSC
T ss_pred HHhcC--CCCHHHHHHHHHHH---HHHhcCCE----EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCC
Confidence 23223 23344433222221 22322221 1211 2468999876 5677776 579999999999987532
Q ss_pred --------HHHHHHHHHHHHh--CCCeEEEEec---------C--cc--------hhhc-CCEEEEEeCCeE
Q 041277 534 --------SERVVQEALDKAV--VGRTTIIIAH---------R--LS--------TIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 534 --------~~~~i~~~l~~~~--~~~t~i~itH---------~--~~--------~~~~-~d~i~~l~~G~i 575 (1133)
....+.+.|+.+. .+.++|+++| + +. .+.+ ||.|++|+.++.
T Consensus 330 ~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 330 RSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1234555566553 3899999999 1 32 3444 999999987654
No 265
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.62 E-value=9.1e-09 Score=106.34 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcC-------------CCCCeEEECCcccCCCChhHHhhcccccccccccccccHHH
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYD-------------PLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRE 1096 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~yd-------------p~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIre 1096 (1133)
|+.++|+||||||||||+++|.++++ |..|++ ||.+....+.+.+++.+ .|+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 888986 99999888888877764 4788899999988
Q ss_pred HhccCCCCCCCHHHHHHHHHH
Q 041277 1097 NIAYGASDEIDESEIVEAAKA 1117 (1133)
Q Consensus 1097 NI~~g~~~~~sdeei~~Al~~ 1117 (1133)
|+ ||.+ .+++.++++.
T Consensus 76 ~~-yg~~----~~~i~~~l~~ 91 (186)
T 3a00_A 76 NY-YGST----VASVKQVSKS 91 (186)
T ss_dssp EE-EEEE----HHHHHHHHHT
T ss_pred ee-ccCc----HHHHHHHHHc
Confidence 87 7643 4456665554
No 266
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.60 E-value=4e-09 Score=118.72 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=64.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhc--------CCCCCeEEECCcccCCCC---------------hhHHhhccccc---c
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFY--------DPLKGDVKIDDRDIRSYH---------------LRSLRRHIALV---S 1084 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~y--------dp~~G~I~IdG~dI~~i~---------------l~~LR~~isiV---~ 1084 (1133)
+.++|+|++||||||+++.|++++ .|+.|+|.|||.++...+ ..++++.++.+ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999998764 45788999988 7
Q ss_pred cccc-cccccHHHHhccCCC
Q 041277 1085 QEPT-LFAGTIRENIAYGAS 1103 (1133)
Q Consensus 1085 Qdp~-LF~gTIreNI~~g~~ 1103 (1133)
|++. .|+.|+.||+.++.|
T Consensus 85 q~~~~~~~~~v~E~~~l~~p 104 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP 104 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH
T ss_pred hcCCCCCCEEEEeCCCCCCH
Confidence 9886 478999999988754
No 267
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.57 E-value=5.7e-09 Score=107.66 Aligned_cols=74 Identities=27% Similarity=0.343 Sum_probs=62.2
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-------------CCccEEEECCeecCCCCHHHHhhhceEEecCCCCc
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-------------PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF 449 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 449 (1133)
|+...+|++++|+||||||||||++.|++.++ |..|+ ++|.+..-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34455899999999999999999999999986 77887 799998888888888876 5889999
Q ss_pred cccHHHHHhcCCC
Q 041277 450 ATSIKENILFGKE 462 (1133)
Q Consensus 450 ~~ti~eni~~~~~ 462 (1133)
.+++.+| .||.+
T Consensus 88 ~~~~~~n-~YGt~ 99 (197)
T 3ney_A 88 FGSYQGN-MFGTK 99 (197)
T ss_dssp EEEETTE-EEEEE
T ss_pred hhhhhce-ecccc
Confidence 9999999 47754
No 268
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.56 E-value=3.1e-09 Score=130.38 Aligned_cols=156 Identities=14% Similarity=0.173 Sum_probs=100.4
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc-cEEEECCeecCCCCHHHHhhhceEEecCC---------
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG-GEIILDGVSIDKLQLKWLRSQMGLVSQEP--------- 446 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~--------- 446 (1133)
.+++++++.+++|+.++|+||+|+|||||+++|+++.++.. |.+.+++.+.... ...++++||..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 48999999999999999999999999999999999999887 8888888765543 23578887754
Q ss_pred -------------CCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 447 -------------ALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 447 -------------~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
+.+. .++.+|+..++.......+... ......+.+.... ++. .....+|+|++|++..++
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~--~~~---~~~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVR--HDP---FQSGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEEC--CCC---C----CCCCGGGGEECCH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEE--ech---hhcCCccccccccccCce
Confidence 2221 1333344332110000000000 0001111221111 010 112359999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHH
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDK 544 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~ 544 (1133)
....++.+|+|||.-. |++.....+.+.|++
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 788887777777754
No 269
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.54 E-value=1.2e-08 Score=113.59 Aligned_cols=85 Identities=21% Similarity=0.252 Sum_probs=35.8
Q ss_pred EeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh-cCCCCCeEEECCcccCCCChhHHhhccccc
Q 041277 1005 QNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF-YDPLKGDVKIDDRDIRSYHLRSLRRHIALV 1083 (1133)
Q Consensus 1005 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~-ydp~~G~I~IdG~dI~~i~l~~LR~~isiV 1083 (1133)
+|++.+|+. ..+++|++|+| +|||++|+|||||++.|++. ..|++| |.++|.++.. +. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 578888953 35899999998 99999999999999999998 788899 9999988754 22 2 4679999
Q ss_pred ccccccc-cccHHHHhccCC
Q 041277 1084 SQEPTLF-AGTIRENIAYGA 1102 (1133)
Q Consensus 1084 ~Qdp~LF-~gTIreNI~~g~ 1102 (1133)
+|++.++ .-||.||..+|.
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp EC---CCEEEEEEEEC----
T ss_pred ecCCCcccCcchhhhhhhhh
Confidence 9987654 558999987753
No 270
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.53 E-value=1.4e-08 Score=110.17 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=63.2
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHh--hhcCCCCCeEEECCcccCCCChhHHhh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE--RFYDPLKGDVKIDDRDIRSYHLRSLRR 1078 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~--R~ydp~~G~I~IdG~dI~~i~l~~LR~ 1078 (1133)
.++++++++.|+.- + .+|.+ .|++|+.++|+||+|||||||++.|. ++.++.+|.+.+++.+..+ .....++
T Consensus 6 ~~~~~~i~tg~~~l-D-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (251)
T 2ehv_A 6 YQPVRRVKSGIPGF-D-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMA 79 (251)
T ss_dssp --CCCEECCSCTTT-G-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHH
T ss_pred ccccceeecCCHhH-H-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHH
Confidence 35667777777521 1 13443 79999999999999999999999999 7756778888888765422 2334457
Q ss_pred ccccccccccccc-ccHHHHh
Q 041277 1079 HIALVSQEPTLFA-GTIRENI 1098 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~-gTIreNI 1098 (1133)
++++++|++..+. -++.++.
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~ 100 (251)
T 2ehv_A 80 SFGWDFEKYEKEGKIAIVDGV 100 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC--
T ss_pred HcCCChHHHhhcCCEEEEEcc
Confidence 7999999975443 2444443
No 271
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.49 E-value=4.4e-08 Score=110.47 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=66.8
Q ss_pred cCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh-----------------------------------------------
Q 041277 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF----------------------------------------------- 1053 (1133)
Q Consensus 1021 ~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~----------------------------------------------- 1053 (1133)
+++++++.|| .++|||+||||||||+.+|..+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578888999 9999999999999999999843
Q ss_pred ---cCCCCCeEEECCcccCCCChhHHhhcccccccccccc-cccHHHHhccC
Q 041277 1054 ---YDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLF-AGTIRENIAYG 1101 (1133)
Q Consensus 1054 ---ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF-~gTIreNI~~g 1101 (1133)
+.+.+|.+++||.+++.-++..+++.+++.||+..++ .|+|.+|+...
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~ 146 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS 146 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC-
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc
Confidence 3445679999999986666777788899999998866 99999999764
No 272
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.48 E-value=3.5e-08 Score=103.65 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=53.6
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccc-----------cccccc
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEP-----------TLFAGT 1093 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp-----------~LF~gT 1093 (1133)
++|++|+.++|+|+|||||||++++|.+++.|..| +.+ +...+.-. ...+..+++++|++ .++..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46899999999999999999999999999977555 222 22222221 11223467777765 455566
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHH
Q 041277 1094 IRENIAYGASDEIDESEIVEAAKA 1117 (1133)
Q Consensus 1094 IreNI~~g~~~~~sdeei~~Al~~ 1117 (1133)
+++|+ ||. ..+++.++++.
T Consensus 78 ~~~~~-~g~----~~~~i~~~l~~ 96 (207)
T 2j41_A 78 YVGNY-YGT----PVQYVKDTMDE 96 (207)
T ss_dssp ETTEE-EEE----EHHHHHHHHHT
T ss_pred ECCee-cCC----CHHHHHHHHHc
Confidence 66663 542 34567766653
No 273
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.46 E-value=2e-08 Score=105.64 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=46.8
Q ss_pred CccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccC
Q 041277 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG 1101 (1133)
Q Consensus 1022 ~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g 1101 (1133)
++-=++++|+.++|+|++||||||++++|.+.++ .+.+|+||+++|++ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 4445788999999999999999999999999875 48999999999987 777665
Q ss_pred C
Q 041277 1102 A 1102 (1133)
Q Consensus 1102 ~ 1102 (1133)
.
T Consensus 67 ~ 67 (207)
T 2qt1_A 67 K 67 (207)
T ss_dssp T
T ss_pred c
Confidence 3
No 274
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.44 E-value=3.1e-09 Score=121.26 Aligned_cols=135 Identities=15% Similarity=0.149 Sum_probs=86.6
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
.+++++++++++|+.++|+||+|||||||+++|+|.+ +|++...+ .. ...++..+++++|...++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~---~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LP---LDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SC---TTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--cc---chhHHHHHHHhcchhHHH----HHH
Confidence 4799999999999999999999999999999999965 67776511 11 122333588889887542 222
Q ss_pred HhcCCC------CCCHHHHHHHHHHhchHHHHHh---------CCCccc-----ccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 457 ILFGKE------DASMEEVIEAAKASNAHNFIRQ---------LPQQYD-----TQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 457 i~~~~~------~~~~~~~~~~~~~~~~~~~i~~---------l~~g~~-----t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+....+ .... +. ....+.+.+.. .|+..+ -.+..+...+++|++||++.+.+++.
T Consensus 225 ~~~~~~~~r~l~~~~~--~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~ 299 (377)
T 1svm_A 225 VKGTGGESRDLPSGQG--IN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRP 299 (377)
T ss_dssp CCCSTTTTTTCCCCSH--HH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCC
T ss_pred HHHHHHHHhhccccCc--ch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCC
Confidence 222211 0011 10 11122333321 000000 12334556789999999999888899
Q ss_pred CCCEEE-EeCccc
Q 041277 517 APRILL-LDEATS 528 (1133)
Q Consensus 517 ~~~ill-lDE~ts 528 (1133)
+|++++ ||+|+.
T Consensus 300 ~pDLliyLd~~~~ 312 (377)
T 1svm_A 300 KDYLKHCLERSEF 312 (377)
T ss_dssp CHHHHHHHHTCTH
T ss_pred CCCeEEEEeCCHH
Confidence 999888 999997
No 275
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.41 E-value=3.8e-08 Score=109.73 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=56.3
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC-eEEECCcccCCCChhHHhhcccccccccc
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG-DVKIDDRDIRSYHLRSLRRHIALVSQEPT 1088 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G-~I~IdG~dI~~i~l~~LR~~isiV~Qdp~ 1088 (1133)
++|+++++.+++|+.++|+||+|||||||++.|.+...|++| .|.+.+.+ .+.+.+++++..+.|+..
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~ 91 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVR 91 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCC
Confidence 379999999999999999999999999999999999999878 78665443 356777777766666543
No 276
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.40 E-value=1.2e-07 Score=117.22 Aligned_cols=135 Identities=17% Similarity=0.164 Sum_probs=96.4
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC--CccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcC
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP--LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFG 460 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~ 460 (1133)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 457789999999999999999999999988765 67988 788889888888888899999999888776666665421
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHH
Q 041277 461 KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540 (1133)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~ 540 (1133)
....+ ++ . . ..+..-..++.++++| |+.++|+.+++.+..
T Consensus 82 pG~~~----------------------------------f~-~--~--~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~ 121 (665)
T 2dy1_A 82 PGYGD----------------------------------FV-G--E--IRGALEAADAALVAVS-AEAGVQVGTERAWTV 121 (665)
T ss_dssp CCSGG----------------------------------GH-H--H--HHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHH
T ss_pred CCccc----------------------------------hH-H--H--HHHHHhhcCcEEEEEc-CCcccchhHHHHHHH
Confidence 10000 00 0 0 0111113466788888 999999988865544
Q ss_pred HHHHHhCCCeEEEEecCcchh
Q 041277 541 ALDKAVVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 541 ~l~~~~~~~t~i~itH~~~~~ 561 (1133)
+.. .+.++|++.|+++..
T Consensus 122 ~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHH---TTCCEEEEEECGGGC
T ss_pred HHH---ccCCEEEEecCCchh
Confidence 322 478889999988754
No 277
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.39 E-value=2.9e-08 Score=107.01 Aligned_cols=52 Identities=27% Similarity=0.427 Sum_probs=35.5
Q ss_pred cEEEEeE-EEECCCCCCCccccCccEEeeC---CCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1001 NIELQNV-HFAYPARPDVMIFEGFSIKIEA---GKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1001 ~I~f~nV-sF~Y~~~~~~~vL~~isl~I~~---Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.++++|| +|+|.+ +.++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6999999 999932 34699999999999 9999999999999999999999843
No 278
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.39 E-value=2.3e-08 Score=102.68 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCC-CccEEE----------ECCeecCCCCHHHHhhhceEEecCCCCccccHHHH
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAP-LGGEII----------LDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
+|++++|+||||||||||+++|++++++ ..|.|. ++|.++...+...+++. +.|+.+++..++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6999999999999999999999999874 445553 35655555666666654 457777888888888
Q ss_pred HhcCC
Q 041277 457 ILFGK 461 (1133)
Q Consensus 457 i~~~~ 461 (1133)
.+|.
T Consensus 81 -~yg~ 84 (180)
T 1kgd_A 81 -MYGT 84 (180)
T ss_dssp -EEEE
T ss_pred -cccc
Confidence 4554
No 279
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.39 E-value=4.8e-08 Score=107.34 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=69.4
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccc-cccc-ccHH
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEP-TLFA-GTIR 1095 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp-~LF~-gTIr 1095 (1133)
.+++++++++++| ++|+||+|||||||+++|.+...+ |.|.++|.++.+......+++++.++|++ .++. -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 3789999999999 999999999999999999999887 79999999998877778889999999997 3433 3677
Q ss_pred HHhccC
Q 041277 1096 ENIAYG 1101 (1133)
Q Consensus 1096 eNI~~g 1101 (1133)
||+...
T Consensus 110 Deid~~ 115 (274)
T 2x8a_A 110 DEVDAL 115 (274)
T ss_dssp ETCTTT
T ss_pred ehhhhh
Confidence 888654
No 280
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.38 E-value=3e-08 Score=101.41 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=39.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEP 1087 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp 1087 (1133)
+++|+||+|||||||+++|.+++. |.++|.+..+......++++++++|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence 689999999999999999999995 778888775543225688999999997
No 281
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.38 E-value=2.6e-08 Score=104.21 Aligned_cols=64 Identities=23% Similarity=0.375 Sum_probs=52.0
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeE--EECCcccCCCChhHHhhcccccccc
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV--KIDDRDIRSYHLRSLRRHIALVSQE 1086 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I--~IdG~dI~~i~l~~LR~~isiV~Qd 1086 (1133)
...+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.+++. .+++.+++.+|+
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~----~~~~~~~~~~~~ 78 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH----GLNRDLSFKAED 78 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT----TTTTTCCSSHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh----HhhcccCcChHH
Confidence 35688899999999999999999999999999999987 67998 999988864 223444454444
No 282
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.38 E-value=1.5e-07 Score=98.31 Aligned_cols=73 Identities=15% Similarity=0.048 Sum_probs=52.5
Q ss_pred CccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccc-cHHHHhc
Q 041277 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIA 1099 (1133)
Q Consensus 1022 ~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~g-TIreNI~ 1099 (1133)
+-.++.++|+.++|+|++||||||++++|.+.+ |.+.+||.++..- ....+..+++++|++.++.. ++.+|+.
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 334677899999999999999999999999987 8999999888531 11233468999999876643 5666653
No 283
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.36 E-value=1e-07 Score=100.34 Aligned_cols=81 Identities=21% Similarity=0.182 Sum_probs=62.7
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCC-CCCeEE----------ECCcccCCCChhHHhhcccccccccccccccHHH
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDP-LKGDVK----------IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRE 1096 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp-~~G~I~----------IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIre 1096 (1133)
++|+.++|+|||||||||++++|.+.+++ ..+.+. .+|++...++.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999976 222222 578888888888888875 6899999999888
Q ss_pred HhccCCCCCCCHHHHHHHHH
Q 041277 1097 NIAYGASDEIDESEIVEAAK 1116 (1133)
Q Consensus 1097 NI~~g~~~~~sdeei~~Al~ 1116 (1133)
| .||.+ .+++.++++
T Consensus 83 ~-~yg~~----~~~i~~~l~ 97 (208)
T 3tau_A 83 N-YYGTP----LEYVEEKLA 97 (208)
T ss_dssp E-EEEEE----HHHHHHHHH
T ss_pred c-cCCCc----HHHHHHHHH
Confidence 8 46643 334444443
No 284
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.34 E-value=2.3e-07 Score=96.73 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=30.2
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHH
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDK 544 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~ 544 (1133)
...||+++.+|++.++| |||+|......+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45699999999999999 999999988877777654
No 285
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.34 E-value=1e-06 Score=103.48 Aligned_cols=113 Identities=24% Similarity=0.347 Sum_probs=75.9
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENI 457 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni 457 (1133)
.++++++.+++| +.|+||+|+|||||++++++..... +-++ +..+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~----------------------f~~i---------s~~~-- 84 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP----------------------FFHI---------SGSD-- 84 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC----------------------EEEE---------EGGG--
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC----------------------eeeC---------CHHH--
Confidence 677888888888 8899999999999999999854210 0001 0000
Q ss_pred hcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc---------
Q 041277 458 LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS--------- 528 (1133)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts--------- 528 (1133)
+...+ +| .|++++|-.+++|....|.||++||+.+
T Consensus 85 -----------------------~~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 85 -----------------------FVELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp -----------------------TTTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred -----------------------HHHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 00000 11 2678999999999999999999999944
Q ss_pred -CCChHHHHHHHHHHHHH-----hCCCeEEEEecCcchh
Q 041277 529 -ALDSESERVVQEALDKA-----VVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 529 -~lD~~~~~~i~~~l~~~-----~~~~t~i~itH~~~~~ 561 (1133)
+.|.+.++.+.+.+..+ ..+..+|.+||+.+.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 56666666665555543 2356788899998654
No 286
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.33 E-value=4.1e-07 Score=116.49 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=57.4
Q ss_pred ccEEEEe-----EEEECCCCCCCccccCccEEeeC-------CCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcc
Q 041277 1000 GNIELQN-----VHFAYPARPDVMIFEGFSIKIEA-------GKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRD 1067 (1133)
Q Consensus 1000 g~I~f~n-----VsF~Y~~~~~~~vL~~isl~I~~-------Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~d 1067 (1133)
+.|+++| |+++|++ +.+|++|++|++++ |+.++|+||+||||||+++.+ ++..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999942 34689999999988 999999999999999999999 99863
Q ss_pred cCCCChhHHhhccc-ccccccccccccHHHHh
Q 041277 1068 IRSYHLRSLRRHIA-LVSQEPTLFAGTIRENI 1098 (1133)
Q Consensus 1068 I~~i~l~~LR~~is-iV~Qdp~LF~gTIreNI 1098 (1133)
+.++| +|||++. .-|+.|||
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I 835 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRV 835 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBE
T ss_pred ---------HhheeEEeccCcC--CCCHHHHH
Confidence 45677 9999984 55777776
No 287
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.32 E-value=7.6e-08 Score=107.39 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=50.7
Q ss_pred CcccEEEEeEEEECCCCCCCcccc--------------CccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFE--------------GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~--------------~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.+|.|+|+||+|.||.+ ..+|+ |+++.|.+||+++|||++|+|||||+++|.|+..
T Consensus 130 ~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 130 ARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 46899999999999853 45788 8999999999999999999999999999999863
No 288
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.29 E-value=1.7e-07 Score=97.93 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=44.9
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCc
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF 449 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 449 (1133)
.++.++|++++|+|||||||||++++|.+.+ |.+.++|.++... ....+..+++++|++..+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccc
Confidence 3667899999999999999999999999987 9999999877521 112233578888875443
No 289
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=2.7e-07 Score=96.26 Aligned_cols=45 Identities=20% Similarity=0.096 Sum_probs=25.1
Q ss_pred ECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1010 AYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1010 ~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+||++++.+.++||||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 577666778999999999999999999999999999999999876
No 290
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.27 E-value=1.5e-07 Score=98.84 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=43.6
Q ss_pred eeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcC
Q 041277 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFG 460 (1133)
Q Consensus 382 i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~ 460 (1133)
+-=++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+.++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 334678899999999999999999999999874 37899999988876 566543
No 291
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.26 E-value=2.3e-07 Score=103.88 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=65.0
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh----hHH-----hhccccc-ccccc
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL----RSL-----RRHIALV-SQEPT 1088 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l----~~L-----R~~isiV-~Qdp~ 1088 (1133)
++++++|++++|+.++++|++|+||||++..|.+.+.+.+|+|++.+.|+..... ..| |.++.++ +|++.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3578899999999999999999999999999999999999999999999865432 345 6789999 77655
Q ss_pred cccc-cHHHHhc
Q 041277 1089 LFAG-TIRENIA 1099 (1133)
Q Consensus 1089 LF~g-TIreNI~ 1099 (1133)
+... ++++|+.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 4433 5677765
No 292
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.24 E-value=8.7e-08 Score=98.45 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=47.3
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe--ecCCCCHH----HHhhhceEEecCC
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV--SIDKLQLK----WLRSQMGLVSQEP 446 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~--~~~~~~~~----~~r~~i~~v~Q~~ 446 (1133)
+++++++.+| +++|+||||||||||+.+|.+++.+..|...-.+. ++-..... ..+..|.+++|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 7889999999 99999999999999999999998887765432221 11111000 1234689999986
No 293
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.23 E-value=6.4e-08 Score=101.18 Aligned_cols=60 Identities=28% Similarity=0.316 Sum_probs=46.3
Q ss_pred EEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE--EECCeecC
Q 041277 365 CVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI--ILDGVSID 428 (1133)
Q Consensus 365 ~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i--~~~g~~~~ 428 (1133)
|++..+.. ....+..++..++|++++|+|||||||||++++|++.+. ..|.+ ++||.++.
T Consensus 4 ~~~~~~~~---~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHECS---VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp ------CC---CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCcccccc---cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 44544432 336788899999999999999999999999999999987 77988 88886654
No 294
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.23 E-value=1.3e-07 Score=101.93 Aligned_cols=52 Identities=29% Similarity=0.392 Sum_probs=35.9
Q ss_pred cEEEEEE-EEEcCCCCCCccccceeEEeeC---CCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 360 EVEFKCV-QFAYPSRPESIIFKDFCLTIPA---GKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 360 ~i~~~~v-~~~y~~~~~~~~l~~i~l~i~~---g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.++++|+ +|+|++ +.++|+|+||+|++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34699999999999 9999999999999999999999865
No 295
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.23 E-value=2.7e-07 Score=95.35 Aligned_cols=61 Identities=20% Similarity=0.107 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccc-cccHHHHhc
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLF-AGTIRENIA 1099 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF-~gTIreNI~ 1099 (1133)
|+.++|+||+||||||+++.|.+ |.+|.+.+||.++... ...++++|++..+ ..|+++|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ 63 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNIT 63 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHH
Confidence 68899999999999999999987 6679999999776442 2568888877543 457888874
No 296
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.22 E-value=3e-08 Score=117.19 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=91.9
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCC-Cccc-cHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPA-LFAT-SIK 454 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-l~~~-ti~ 454 (1133)
.+++++++++++| +.|+||+|+|||||+++|++... .|.+.++|.++.+......++++..++|+.. ..+. .+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 4789999999999 99999999999999999999875 7899999988876555555667888888864 2333 556
Q ss_pred HHHh-cCCCCC-----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc
Q 041277 455 ENIL-FGKEDA-----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528 (1133)
Q Consensus 455 eni~-~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 528 (1133)
|+|. ++.... ..++..+.+ ..++. .|||||+|+..+++|...+|++ ||||.-
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 7773 332211 112221211 12222 3789999999999999999987 899876
Q ss_pred C
Q 041277 529 A 529 (1133)
Q Consensus 529 ~ 529 (1133)
.
T Consensus 188 r 188 (499)
T 2dhr_A 188 R 188 (499)
T ss_dssp S
T ss_pred c
Confidence 4
No 297
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.20 E-value=4.3e-07 Score=112.76 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=61.4
Q ss_pred cccEEEEeEEEECCCC--CCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcC-CCCCeEEECCcccCCCChhH
Q 041277 999 TGNIELQNVHFAYPAR--PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-PLKGDVKIDDRDIRSYHLRS 1075 (1133)
Q Consensus 999 ~g~I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd-p~~G~I~IdG~dI~~i~l~~ 1075 (1133)
.+.|++++. ++|-- .+.+|++|+||+ |+.++|+||+||||||+++++.++.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 467999987 66631 235689999999 99999999999999999999999974 6778753 1 1
Q ss_pred Hhhccccccccccccc-ccHHHHhccC
Q 041277 1076 LRRHIALVSQEPTLFA-GTIRENIAYG 1101 (1133)
Q Consensus 1076 LR~~isiV~Qdp~LF~-gTIreNI~~g 1101 (1133)
.+.++++|+| +|. -|++||+..|
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g 635 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG 635 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C
T ss_pred hccceeeHHH---hhccCCHHHHHHhc
Confidence 2567999998 565 4899999776
No 298
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.19 E-value=1.6e-07 Score=100.57 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=51.9
Q ss_pred cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCC------ChhH----Hhhccccccccccccc
Q 041277 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY------HLRS----LRRHIALVSQEPTLFA 1091 (1133)
Q Consensus 1024 sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i------~l~~----LR~~isiV~Qdp~LF~ 1091 (1133)
+.+.++|+.++|+|++||||||++++|.++ +|+|.++|.|.... .+.. .++.+++++|++.+|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 446689999999999999999999999998 79999999987532 1211 2567999999988764
No 299
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.19 E-value=2.7e-07 Score=113.95 Aligned_cols=105 Identities=21% Similarity=0.144 Sum_probs=82.8
Q ss_pred cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC--CCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccC
Q 041277 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP--LKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG 1101 (1133)
Q Consensus 1024 sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp--~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g 1101 (1133)
|+++++|.+++|+|++|+|||||++.|.+...+ ..|+| .+|.++.+....+.++.+++++|.+.++.++++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD- 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD- 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE-
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe-
Confidence 467889999999999999999999999988765 67999 89999999999999999999999999999999999852
Q ss_pred CCCCC-CHHHHHHHHHHcchHHHHhhcccc
Q 041277 1102 ASDEI-DESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1102 ~~~~~-sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
.|... -..++..+++.++..-++-...+|
T Consensus 81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g 110 (665)
T 2dy1_A 81 APGYGDFVGEIRGALEAADAALVAVSAEAG 110 (665)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTTC
T ss_pred CCCccchHHHHHHHHhhcCcEEEEEcCCcc
Confidence 12211 125788888887765444433333
No 300
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.17 E-value=1.7e-07 Score=101.37 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHh---hhcCCCCCeEEECCcccCCCChhHHhhccccccccccccc-ccHHHHhcc
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIE---RFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFA-GTIRENIAY 1100 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~---R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~-gTIreNI~~ 1100 (1133)
+++.++|+|++||||||++++|. ++..|+.|+|.++|.+.. ..++..+..++|++.++. .|+.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 47999999999999999999999 999999999999887642 246677888888887655 488888853
No 301
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.17 E-value=5.7e-07 Score=100.61 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=55.5
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH----HHH-----hhhceEE-ecCC
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL----KWL-----RSQMGLV-SQEP 446 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~----~~~-----r~~i~~v-~Q~~ 446 (1133)
++++||++++|++++++|++|+||||++..|++.+.+.+|+|.+.+.|+..... ..+ +..+.++ +|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 467888899999999999999999999999999999999999998888754321 233 4568888 6654
No 302
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.15 E-value=1.4e-06 Score=99.32 Aligned_cols=142 Identities=14% Similarity=0.214 Sum_probs=82.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccC-----------CCccEEEECCeecCCCCHHHHhhhceEEecCCCC----ccccHHH
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYA-----------PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPAL----FATSIKE 455 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~-----------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l----~~~ti~e 455 (1133)
.++|+|++|||||||++.|.|... |..|.|.++|.++.- ....|++.|.|.- |..| .+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l------~DT~G~i~~lp~~lve~f~~t-l~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML------VDTVGFIRGIPPQIVDAFFVT-LS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE------EECCCBCSSCCGGGHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE------EeCCCchhcCCHHHHHHHHHH-HH
Confidence 499999999999999999999765 677999999976532 2246666664431 2222 22
Q ss_pred HHh------cCCC-CCCHHHHHHHHHHhchHHHHHhC--CCcccccccCCCCCCChHHHHHHHHH----HHH-hhCCCEE
Q 041277 456 NIL------FGKE-DASMEEVIEAAKASNAHNFIRQL--PQQYDTQVGERGVQMSGGQKQRIAIA----RAI-IKAPRIL 521 (1133)
Q Consensus 456 ni~------~~~~-~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqri~iA----Ral-~~~~~il 521 (1133)
.+. +-.. .....+..+..+. ..+.+..+ ++----.|+.+...+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 222 1110 0111011111111 11222222 11111223444456788899988887 665 444454
Q ss_pred EEeCcccCCChHHHHHHHHHHHHH
Q 041277 522 LLDEATSALDSESERVVQEALDKA 545 (1133)
Q Consensus 522 llDE~ts~lD~~~~~~i~~~l~~~ 545 (1133)
+|+|++|.+....+.+.|.+.
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHH
Confidence 899999999888888877664
No 303
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.15 E-value=1.1e-06 Score=94.63 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=58.8
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhh--hcCC-----CCCeEEECCcccC-CCChhHHhhcccccccccccccccHHHH
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIER--FYDP-----LKGDVKIDDRDIR-SYHLRSLRRHIALVSQEPTLFAGTIREN 1097 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R--~ydp-----~~G~I~IdG~dI~-~i~l~~LR~~isiV~Qdp~LF~gTIreN 1097 (1133)
-+++|+.++|+||+||||||+++.|.+ ...| ..|.+++++.+.- .-.+..+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 4544 5789999998732 11244566788998876 5678
Q ss_pred hccCCCCCCCHHHHHHH
Q 041277 1098 IAYGASDEIDESEIVEA 1114 (1133)
Q Consensus 1098 I~~g~~~~~sdeei~~A 1114 (1133)
+.+..+ .+.++..+.
T Consensus 93 ~~~~~~--~~~~~~~~~ 107 (243)
T 1n0w_A 93 VAYARA--FNTDHQTQL 107 (243)
T ss_dssp EEEEEC--CSHHHHHHH
T ss_pred eEEEec--CCHHHHHHH
Confidence 876533 344444443
No 304
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.15 E-value=1.7e-07 Score=112.29 Aligned_cols=71 Identities=28% Similarity=0.352 Sum_probs=53.9
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc-EEE-ECCeecCC-------CCH---HHHhhhceEEecCCCCccc
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG-EII-LDGVSIDK-------LQL---KWLRSQMGLVSQEPALFAT 451 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G-~i~-~~g~~~~~-------~~~---~~~r~~i~~v~Q~~~l~~~ 451 (1133)
..+++|++++|+|+||||||||+++|++.+.|++| ++. +||.++.+ ++. ...++++++++|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36789999999999999999999999999999987 784 99977632 122 22445688888862
Q ss_pred cHHHHHhc
Q 041277 452 SIKENILF 459 (1133)
Q Consensus 452 ti~eni~~ 459 (1133)
+..+|+.+
T Consensus 439 ~~~~~ivi 446 (552)
T 3cr8_A 439 TKNRGIAI 446 (552)
T ss_dssp HHTTCEEE
T ss_pred HhcCCEEE
Confidence 34455544
No 305
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.15 E-value=2.1e-07 Score=97.87 Aligned_cols=70 Identities=23% Similarity=0.214 Sum_probs=45.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCC-CccEEE----------ECCeecCCCCHHHHhhhceEEecCCCCccccHHH
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAP-LGGEII----------LDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKE 455 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 455 (1133)
++|++++|+|||||||||+++.|++.+++ ..+.+. .+|.+....+...+++.+ .|+.++...++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999986 333332 234333334444444433 3444555555555
Q ss_pred HHhcC
Q 041277 456 NILFG 460 (1133)
Q Consensus 456 ni~~~ 460 (1133)
| .||
T Consensus 83 ~-~yg 86 (208)
T 3tau_A 83 N-YYG 86 (208)
T ss_dssp E-EEE
T ss_pred c-cCC
Confidence 5 344
No 306
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.13 E-value=9.4e-07 Score=92.57 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=40.1
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCC
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPA 447 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 447 (1133)
+++++|++++|+|||||||||++++|.+++.|+.| +.+ +....... ...+..++|++|++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHH
Confidence 46889999999999999999999999999977655 212 22222111 111234778888754
No 307
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.13 E-value=1.4e-06 Score=99.86 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=35.0
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh--ccCCCccEEEECC
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR--FYAPLGGEIILDG 424 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~--~~~~~~G~i~~~g 424 (1133)
.+|++++++++ .++|||++|||||||++.|.| +.++..|.+.-..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 37899999998 999999999999999999999 6777777665443
No 308
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.12 E-value=2.2e-07 Score=111.16 Aligned_cols=90 Identities=23% Similarity=0.264 Sum_probs=64.4
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC-eEE-ECCcccCC-------CCh---hHHhhcccccccccccccc
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG-DVK-IDDRDIRS-------YHL---RSLRRHIALVSQEPTLFAG 1092 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G-~I~-IdG~dI~~-------i~l---~~LR~~isiV~Qdp~LF~g 1092 (1133)
..+++|+.++|+|+||||||||+++|.+.+.|++| +|. +||.++.+ ++. ...++++++|+|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36889999999999999999999999999999887 784 99987743 222 23567789999983
Q ss_pred cHHHHhccCCC---CCCCHHHHHHHHHHcc
Q 041277 1093 TIRENIAYGAS---DEIDESEIVEAAKAAN 1119 (1133)
Q Consensus 1093 TIreNI~~g~~---~~~sdeei~~Al~~a~ 1119 (1133)
+..+|+.+... .....++++++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 34556544321 1122345666666554
No 309
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.12 E-value=1.4e-05 Score=90.21 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=45.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE-EECCeecCCCCHHHHhhhceEEecCCC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI-ILDGVSIDKLQLKWLRSQMGLVSQEPA 447 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 447 (1133)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.+..+ ..+.+++|+.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhh
Confidence 478999999999999999999999999988877865 666643221 224456777766543
No 310
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.11 E-value=4.8e-07 Score=92.80 Aligned_cols=99 Identities=22% Similarity=0.218 Sum_probs=64.7
Q ss_pred cCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCc--ccCCCChh----HHhhcccccccccc------
Q 041277 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR--DIRSYHLR----SLRRHIALVSQEPT------ 1088 (1133)
Q Consensus 1021 ~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~--dI~~i~l~----~LR~~isiV~Qdp~------ 1088 (1133)
+++++++.+| .++||||||||||||+.+|..+..+..|...-.+. ++-.-... ..+..|.+++|+|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 99999999999999999999988887776543332 11111110 24567999999863
Q ss_pred ----cccccHHHH----hccCCCCCCCHHHHHHHHHHcchH
Q 041277 1089 ----LFAGTIREN----IAYGASDEIDESEIVEAAKAANAH 1121 (1133)
Q Consensus 1089 ----LF~gTIreN----I~~g~~~~~sdeei~~Al~~a~l~ 1121 (1133)
.+..++..+ +... ....+.+++.+.++.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~-g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLN-GRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEET-TEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEEC-CeEcCHHHHHHHHHHcCCC
Confidence 223333221 1111 1124677888888877653
No 311
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.10 E-value=1.9e-08 Score=114.21 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=71.7
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCC-------CEEEEEcCCCCCHHHHHHHHhhhc----CCCCCeEEECCcccCC
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAG-------KSTALVGQSGSGKSTIIGLIERFY----DPLKGDVKIDDRDIRS 1070 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~G-------e~vaIVG~SGSGKSTL~~LL~R~y----dp~~G~I~IdG~dI~~ 1070 (1133)
++.++++..|+. ..+++++++.+++| +.++|+||+|+|||||++++.+.. .+.+|.+..+|.|+..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 334455556642 24889999999887 889999999999999999999998 6778888888877654
Q ss_pred CChhHHhhcccccccccccccccHHHHhc
Q 041277 1071 YHLRSLRRHIALVSQEPTLFAGTIRENIA 1099 (1133)
Q Consensus 1071 i~l~~LR~~isiV~Qdp~LF~gTIreNI~ 1099 (1133)
+....-+..|.+|+|...|+. |+.|++.
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 321112467999999988876 7888773
No 312
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=1.2e-06 Score=91.36 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=25.1
Q ss_pred EcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 369 AYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 369 ~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+|+.++...+++|+||++++|+.++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 466555667899999999999999999999999999999999876
No 313
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.06 E-value=1.7e-06 Score=99.59 Aligned_cols=71 Identities=24% Similarity=0.282 Sum_probs=53.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHH--hhhcCCCC-----CeEEECCccc-CCCChhHHhhcccccccccccccccHHHH
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLI--ERFYDPLK-----GDVKIDDRDI-RSYHLRSLRRHIALVSQEPTLFAGTIREN 1097 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL--~R~ydp~~-----G~I~IdG~dI-~~i~l~~LR~~isiV~Qdp~LF~gTIreN 1097 (1133)
-|++|+.++|+||+|||||||++.| ....+++. +.|+||+.+. +...+..+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 5899999999999999999999944 45555533 4899999873 22334456678898877 57889
Q ss_pred hccCCC
Q 041277 1098 IAYGAS 1103 (1133)
Q Consensus 1098 I~~g~~ 1103 (1133)
+.+.++
T Consensus 247 i~~~~~ 252 (400)
T 3lda_A 247 VAYARA 252 (400)
T ss_dssp EEEEEC
T ss_pred EEEecc
Confidence 888653
No 314
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.05 E-value=1.2e-06 Score=99.77 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=52.0
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccc
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLF 1090 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF 1090 (1133)
.+|+++|+++++|+.++|+||+||||||++++|.+.+ +|++..- +. +.+.++..++++||...+|
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~---~~~~~~~~lg~~~q~~~~l 221 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NL---PLDRLNFELGVAIDQFLVV 221 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SS---CTTTHHHHHGGGTTCSCEE
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--ec---cchhHHHHHHHhcchhHHH
Confidence 4899999999999999999999999999999999975 5777651 11 2233455689999998753
No 315
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.02 E-value=6.1e-07 Score=98.91 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=72.7
Q ss_pred EEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccc
Q 041277 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082 (1133)
Q Consensus 1003 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isi 1082 (1133)
+++++...|. +..+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......+++++.
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4456666663 235799999999999 99999999999999999999986 7999999998877666777888999
Q ss_pred cccccc-cc-cccHHHHh
Q 041277 1083 VSQEPT-LF-AGTIRENI 1098 (1133)
Q Consensus 1083 V~Qdp~-LF-~gTIreNI 1098 (1133)
++|++. .+ .-++.||+
T Consensus 124 ~~~~~~~~~~~i~~iDei 141 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEI 141 (278)
T ss_dssp HHHHHHTSCSEEEEEETH
T ss_pred HHHHHHhcCCcEEehhhh
Confidence 999975 34 34677888
No 316
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.00 E-value=6.7e-07 Score=97.17 Aligned_cols=90 Identities=14% Similarity=0.129 Sum_probs=73.4
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
.+++++...|. +..+++++++++++| ++|+||+|||||||++++.+... .|.|.++|.++.+......+++++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 45667777673 235799999999999 99999999999999999999886 799999999887766667788899
Q ss_pred ccccccc-cc-cccHHHHh
Q 041277 1082 LVSQEPT-LF-AGTIRENI 1098 (1133)
Q Consensus 1082 iV~Qdp~-LF-~gTIreNI 1098 (1133)
.++|++. .+ .-++.||+
T Consensus 99 ~~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp HHHHHHTTSSSEEEEEETH
T ss_pred HHHHHHHhcCCeEEEehhh
Confidence 9999874 33 34567777
No 317
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.99 E-value=2.3e-06 Score=89.68 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh---hcCCEEEEEeC
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI---RNADVIAVVQD 572 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~---~~~d~i~~l~~ 572 (1133)
.+.|+.+|..+++.+..+|+.+-.+ .+.++|...+.+.+.+... .+.++|+-+|.+... ..||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 4688999999999999888754333 3455666666666555433 356888888877553 45999999863
No 318
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.95 E-value=1.4e-06 Score=93.07 Aligned_cols=67 Identities=18% Similarity=0.057 Sum_probs=54.2
Q ss_pred ccccCccE-EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh---ccccccccc
Q 041277 1018 MIFEGFSI-KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR---HIALVSQEP 1087 (1133)
Q Consensus 1018 ~vL~~isl-~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~---~isiV~Qdp 1087 (1133)
+.|+++.. .+++|+.++|+||+||||||+++.+.+...+++|.+.+.+.+. +.+.+++ .+++.+|+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~ 80 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEY 80 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGG
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHH
Confidence 47899998 8999999999999999999999999998888889998877655 3344333 467766654
No 319
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.92 E-value=5.2e-07 Score=96.43 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=48.6
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC------CHHH----HhhhceEEecCCCCcc
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL------QLKW----LRSQMGLVSQEPALFA 450 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~------~~~~----~r~~i~~v~Q~~~l~~ 450 (1133)
+.+.++|++++|+|++||||||++++|.++ .|+|.+.+.+.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 345679999999999999999999999998 78999998876421 1211 1456788888765543
No 320
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.91 E-value=4.5e-06 Score=84.88 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=44.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh-ccccccccccc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR-HIALVSQEPTL 1089 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~-~isiV~Qdp~L 1089 (1133)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.. ...+++ .++.++|++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~ 62 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDDDR 62 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCcccc
Confidence 468999999999999999999999876 889999988753 223333 57777776543
No 321
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.91 E-value=1.2e-05 Score=100.88 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=51.6
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCccc-CCChHHHHHHHHHHHHHhC-CCeEEE-EecCcchhhc
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATS-ALDSESERVVQEALDKAVV-GRTTII-IAHRLSTIRN 563 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts-~lD~~~~~~i~~~l~~~~~-~~t~i~-itH~~~~~~~ 563 (1133)
.-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+....+ .+++++ .||+.+.+..
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 4579999999999999999999999999997 8998766555555555443 466766 4898776543
No 322
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.89 E-value=1.6e-06 Score=96.78 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=51.1
Q ss_pred ccccccEEEEEEEEEcCCCCCCcccc--------------ceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 355 ENVLGEVEFKCVQFAYPSRPESIIFK--------------DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 355 ~~~~~~i~~~~v~~~y~~~~~~~~l~--------------~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
+...+.+.|+|++|.||.. +.+|+ |+++.+.+||.++|+||+|+|||||++.|.++..
T Consensus 128 e~~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 128 ENARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hhhcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3346789999999999864 45788 8999999999999999999999999999999763
No 323
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.89 E-value=1.3e-05 Score=90.24 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=26.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
-+++|+++.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58899999999999999999999888653
No 324
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.85 E-value=2.1e-05 Score=89.90 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=47.1
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEe-CcccCCChHHHHHHHHHHHHHhCCCeEEEEe--cCc
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLD-EATSALDSESERVVQEALDKAVVGRTTIIIA--HRL 558 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlD-E~ts~lD~~~~~~i~~~l~~~~~~~t~i~it--H~~ 558 (1133)
..+|+|++|++. +.+...++-++++| ++.+++|.+....+.+.+.....++.+|+|. ||+
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 468999999887 66556777889999 9999999988777777776655578888888 554
No 325
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.83 E-value=1.3e-05 Score=79.10 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=41.7
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC--eEEECCcccCCC
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG--DVKIDDRDIRSY 1071 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G--~I~IdG~dI~~i 1071 (1133)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++..-
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH
Confidence 57777 9999999999999999999999999987 58 899999887654
No 326
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.83 E-value=6.7e-05 Score=83.97 Aligned_cols=102 Identities=13% Similarity=0.164 Sum_probs=67.5
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENI 457 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni 457 (1133)
-|+.+.--+++|+++.|.|++|+|||||+.-++.......+. +.|++=|
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fSlE------------ 83 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFSLE------------ 83 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEESS------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEeCC------------
Confidence 466666678999999999999999999998887654332222 3333211
Q ss_pred hcCCCCCCHHHHHH----HHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCC
Q 041277 458 LFGKEDASMEEVIE----AAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL 530 (1133)
Q Consensus 458 ~~~~~~~~~~~~~~----~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~l 530 (1133)
.+.+++.. +.....++.... ..||++++||++.|...+.+++++|.|+|...+
T Consensus 84 ------ms~~ql~~Rlls~~~~v~~~~l~~--------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si 140 (338)
T 4a1f_A 84 ------MSAEQLALRALSDLTSINMHDLES--------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI 140 (338)
T ss_dssp ------SCHHHHHHHHHHHHHCCCHHHHHH--------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH
T ss_pred ------CCHHHHHHHHHHHhhCCCHHHHhc--------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH
Confidence 22233222 111122222111 269999999999999999999999999986543
No 327
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.81 E-value=5.2e-06 Score=84.38 Aligned_cols=53 Identities=25% Similarity=0.266 Sum_probs=40.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh-hceEEecC
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS-QMGLVSQE 445 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~-~i~~v~Q~ 445 (1133)
.+|++++|+|++||||||+++.|.+.+ |.+.+++.++.. ...+++ .+|+.+|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 468999999999999999999999976 889999876643 122222 45666654
No 328
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.79 E-value=3.6e-06 Score=93.25 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=54.9
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCC
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY 1071 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i 1071 (1133)
+.++++++.|+.. . ++++|+ +|+.++++|++|+||||++..|.+++.+..|+|.+.+.|++.-
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~ 139 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH
Confidence 6677888889532 1 688888 9999999999999999999999999999999999999998753
No 329
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.78 E-value=6.6e-06 Score=85.79 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=40.8
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH 1072 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~ 1072 (1133)
..++|+.+||+|++||||||+++.|.+++.+.+|.|.+.|.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 46789999999999999999999999999988999988777754443
No 330
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.78 E-value=4.2e-05 Score=88.35 Aligned_cols=160 Identities=20% Similarity=0.200 Sum_probs=91.4
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH-HhhhceEE
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW-LRSQMGLV 442 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~v 442 (1133)
++++..|+... ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+......+ ++.. +
T Consensus 80 ~~L~~~~~~~~-----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-~-- 149 (425)
T 2ffh_A 80 EALKEALGGEA-----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-G-- 149 (425)
T ss_dssp HHHHHHTTSSC-----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-H--
T ss_pred HHHHHHhCCCc-----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-c--
Confidence 44555665321 567887 89999999999999999999999999999999999887765432221 2110 0
Q ss_pred ecCCCCccccHHHHHhc--CCCCCCHHHHHHHHHHhchHHHHHhC-CCcccccccCCCCCCC---hHHHHHHHHHHHHhh
Q 041277 443 SQEPALFATSIKENILF--GKEDASMEEVIEAAKASNAHNFIRQL-PQQYDTQVGERGVQMS---GGQKQRIAIARAIIK 516 (1133)
Q Consensus 443 ~Q~~~l~~~ti~eni~~--~~~~~~~~~~~~~~~~~~~~~~i~~l-~~g~~t~~~~~g~~LS---gGqkqri~iARal~~ 516 (1133)
-..|+.+ ..+..+..++.. +.++.+ .++||..+=+.+..++ .-..+...+++++..
T Consensus 150 ----------~~~gv~v~~~~~~~~p~~i~~--------~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~p 211 (425)
T 2ffh_A 150 ----------EKVGVPVLEVMDGESPESIRR--------RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP 211 (425)
T ss_dssp ----------HHHTCCEEECCTTCCHHHHHH--------HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC
T ss_pred ----------ccCCccEEecCCCCCHHHHHH--------HHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCC
Confidence 0111111 011122333311 122222 2466655544333332 346677788888866
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEec
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAH 556 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH 556 (1133)
++-++++| ++++.|.... + +.+.+ .-+.+-+++|+
T Consensus 212 d~vlLVvD-a~tgq~av~~--a-~~f~~-~l~i~GVIlTK 246 (425)
T 2ffh_A 212 DEVLLVLD-AMTGQEALSV--A-RAFDE-KVGVTGLVLTK 246 (425)
T ss_dssp SEEEEEEE-GGGTTHHHHH--H-HHHHH-HTCCCEEEEES
T ss_pred ceEEEEEe-ccchHHHHHH--H-HHHHh-cCCceEEEEeC
Confidence 66677777 5666554322 1 22222 12456677775
No 331
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.67 E-value=5.7e-05 Score=87.32 Aligned_cols=40 Identities=33% Similarity=0.402 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeec
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI 427 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~ 427 (1133)
++.+++++||+||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999998888888766554
No 332
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.65 E-value=1.4e-05 Score=83.24 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=40.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~ 431 (1133)
..++|++++|+|+|||||||+++.|.+.+++..|.|.+.+.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 35689999999999999999999999999998999988766654433
No 333
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.65 E-value=9.3e-06 Score=82.88 Aligned_cols=54 Identities=26% Similarity=0.427 Sum_probs=40.9
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC--eEEECCcccCCCChhHHhhcccccccc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDPLKG--DVKIDDRDIRSYHLRSLRRHIALVSQE 1086 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G--~I~IdG~dI~~i~l~~LR~~isiV~Qd 1086 (1133)
++|+.++|+|++||||||++++|.+.+.+ .| .|.+||.+++.. ++..+++.+|+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~~----~~~~~~~~~~~ 58 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQG----LNKNLGFSPED 58 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTTT----TTTTCCSSHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHHH----Hhhcccccccc
Confidence 47999999999999999999999998876 57 788888777541 23344555444
No 334
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.65 E-value=1.3e-05 Score=89.21 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=42.5
Q ss_pred ccccCccEEeeCCC------EEEEEcCCCCCHHHHHHHHhhhcC--CCCCeEEECCcccCCCCh
Q 041277 1018 MIFEGFSIKIEAGK------STALVGQSGSGKSTIIGLIERFYD--PLKGDVKIDDRDIRSYHL 1073 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge------~vaIVG~SGSGKSTL~~LL~R~yd--p~~G~I~IdG~dI~~i~l 1073 (1133)
..|++++..+.+++ .+||+|+|||||||++++|.++++ |++|.+.+-+.|--.++.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~ 137 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSN 137 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccch
Confidence 36778888887776 899999999999999999999998 456775544444333333
No 335
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.60 E-value=1.5e-05 Score=88.77 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=36.9
Q ss_pred ccccceeEEeeCCC------EEEEEcCCCCcHHHHHHHHHhccC--CCccEE
Q 041277 377 IIFKDFCLTIPAGK------TVALVGGSGSGKSTVIALLQRFYA--PLGGEI 420 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~------~~~ivG~sGsGKSTll~~l~~~~~--~~~G~i 420 (1133)
..|++++..+.+++ ++||+|||||||||++++|.+++. |++|.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 36788888887776 999999999999999999999987 455543
No 336
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.59 E-value=1.5e-05 Score=92.01 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=32.5
Q ss_pred ccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1020 FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1020 L~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
-++++|++++|+.|||||++|||||||++.|.+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 3799999999999999999999999999999987
No 337
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.59 E-value=3.2e-05 Score=81.51 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=43.7
Q ss_pred ccccCccE-EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh
Q 041277 1018 MIFEGFSI-KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078 (1133)
Q Consensus 1018 ~vL~~isl-~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~ 1078 (1133)
+.|+++.. -+++|+.++|+||+||||||+++.+.+ .+..+.+++++.+ ..+.+.+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH
Confidence 35677765 799999999999999999999999999 4455667777654 234555544
No 338
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.58 E-value=2e-05 Score=87.40 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=42.9
Q ss_pred ccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC
Q 041277 1023 FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS 1070 (1133)
Q Consensus 1023 isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~ 1070 (1133)
++++.++|+.++|||++||||||++..|.+++.+++|+|.+.+.|+..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 355577899999999999999999999999999999999999888754
No 339
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.58 E-value=3.9e-05 Score=90.04 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=43.8
Q ss_pred hCCCEEEEeCcccCCCh-HHHHHHHHHHHHHh-CCCeEEEEecCc-chhhc-CCEEEE-EeCCeEEeecCcc
Q 041277 516 KAPRILLLDEATSALDS-ESERVVQEALDKAV-VGRTTIIIAHRL-STIRN-ADVIAV-VQDGQVMETGSHD 582 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~-~~~~~i~~~l~~~~-~~~t~i~itH~~-~~~~~-~d~i~~-l~~G~i~~~g~~~ 582 (1133)
.+|++|++||+..-.+. .++..+...+.... .++.+|++||+. ..+.. .+++.- ++.|.+++.+.++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887765 56777778777654 578899999984 33322 222222 3456665555443
No 340
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.55 E-value=0.0003 Score=81.01 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=32.6
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh----CCCeEEEEecCcch
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV----VGRTTIIIAHRLST 560 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~ 560 (1133)
.+|.++++||+... |......+.+.+.+.. .+.++|+++|+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45789999999876 8777777776665443 36678888998754
No 341
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.54 E-value=3.2e-05 Score=88.19 Aligned_cols=56 Identities=25% Similarity=0.263 Sum_probs=35.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh-hcCCCCCeEEECCcccCCCChhHHhhccccccccccc
Q 041277 1032 STALVGQSGSGKSTIIGLIER-FYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTL 1089 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R-~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~L 1089 (1133)
.+.|+||+|+||||++++|.+ ++.|+.|.|.++|.+...... -+..+++++|++++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHL 94 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceE
Confidence 499999999999999999999 899999999999998765333 37889999999876
No 342
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.54 E-value=1.5e-05 Score=82.36 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=32.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCC-----------CCCeEEECCccc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDP-----------LKGDVKIDDRDI 1068 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp-----------~~G~I~IdG~dI 1068 (1133)
+++|||++|||||||++.|.+...+ ..|+|.+||.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 7899999999999999999998654 478999999765
No 343
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.51 E-value=2.8e-05 Score=97.18 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=54.3
Q ss_pred ccEEEEeEEEECCCC----CCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC-CCCeEEECCcccCCCChh
Q 041277 1000 GNIELQNVHFAYPAR----PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP-LKGDVKIDDRDIRSYHLR 1074 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~----~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp-~~G~I~IdG~dI~~i~l~ 1074 (1133)
+.|++++. ++|-- .+..|++|+||+ ++|+.++|+||+||||||+++++.++.-+ +.| ..+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 45777764 55520 234689999999 99999999999999999999999998532 333 12211
Q ss_pred HHhhccccccccccccc-ccHHHHhccC
Q 041277 1075 SLRRHIALVSQEPTLFA-GTIRENIAYG 1101 (1133)
Q Consensus 1075 ~LR~~isiV~Qdp~LF~-gTIreNI~~g 1101 (1133)
-+..+++++| +|. -++.||+..+
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~ 666 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG 666 (800)
T ss_dssp -SEEEECCCCE---EEEEEC--------
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh
Confidence 1356888887 454 3788998765
No 344
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.49 E-value=1e-05 Score=85.62 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhc---CCCCCeE--------EECCcccCCCC-hhHHhhcccccc------ccccccc
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFY---DPLKGDV--------KIDDRDIRSYH-LRSLRRHIALVS------QEPTLFA 1091 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~y---dp~~G~I--------~IdG~dI~~i~-l~~LR~~isiV~------Qdp~LF~ 1091 (1133)
.-.++|+||+||||||+.+.|.+.+ -.+.|.+ .-.|+|..+.. +..+.+++.+++ |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 3489999999999999999998543 3455665 34577776653 566777777776 6677888
Q ss_pred ccHHHHhc
Q 041277 1092 GTIRENIA 1099 (1133)
Q Consensus 1092 gTIreNI~ 1099 (1133)
..|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 78888873
No 345
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.48 E-value=2.2e-05 Score=81.93 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=45.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC-CCCeE----------EECCcccCCCChhHHhhcccccccccccccccH
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDP-LKGDV----------KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTI 1094 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp-~~G~I----------~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTI 1094 (1133)
+..+|..++|+|+|||||||+++.|.+.++. ..+.+ .+||.|..-++.+.+++.+ .|+.+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHh
Confidence 4578999999999999999999999987742 11111 2478787777877776543 34444444433
No 346
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.47 E-value=5.8e-05 Score=89.17 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=70.4
Q ss_pred EEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccc
Q 041277 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082 (1133)
Q Consensus 1003 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isi 1082 (1133)
+++++...|. ++.+++++++++++| +.|+||+|+|||||++++.+... .|.|.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 4445544453 224789999999999 99999999999999999999875 6899999999987777777888989
Q ss_pred cccccc-cccc-cHHHHh
Q 041277 1083 VSQEPT-LFAG-TIRENI 1098 (1133)
Q Consensus 1083 V~Qdp~-LF~g-TIreNI 1098 (1133)
++|++. .+.+ .+-|||
T Consensus 115 lfq~a~~~~p~il~IDEI 132 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEI 132 (499)
T ss_dssp HTTTSSSSSSCEEEEECG
T ss_pred HHHHHHhcCCCEEEEehH
Confidence 999875 3322 456777
No 347
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.45 E-value=0.00014 Score=82.47 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=26.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999998875
No 348
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.40 E-value=5.1e-05 Score=78.69 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=38.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc-----CCC------CCeEEECCcccC----CC-ChhHHhhcccccccc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY-----DPL------KGDVKIDDRDIR----SY-HLRSLRRHIALVSQE 1086 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y-----dp~------~G~I~IdG~dI~----~i-~l~~LR~~isiV~Qd 1086 (1133)
+++|||++|||||||++.|.+.. .|+ .|+|.+||.++. +. ..+..|+......|+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~ 77 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG 77 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTT
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhc
Confidence 68999999999999999999973 243 578999997652 22 234444444444444
No 349
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.37 E-value=5.3e-05 Score=85.89 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=37.5
Q ss_pred ccccceeEEeeCCCE--EEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 377 IIFKDFCLTIPAGKT--VALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~--~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
.+++.++..++.|+. +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488999999999998 999999999999999999998766544
No 350
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.35 E-value=8.6e-05 Score=84.88 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=37.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhh------------hcCCCCCeEEECCc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIER------------FYDPLKGDVKIDDR 1066 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R------------~ydp~~G~I~IdG~ 1066 (1133)
++++|.++||||++|+|||||++.|.+ ..+|+.|.|.++|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 568899999999999999999999999 67899999999884
No 351
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.34 E-value=2.9e-05 Score=79.11 Aligned_cols=40 Identities=43% Similarity=0.493 Sum_probs=33.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc--EEEECCeec
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAPLGG--EIILDGVSI 427 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G--~i~~~g~~~ 427 (1133)
++|++++|+|++||||||+.++|.+.+.+ .| .+.+|+..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998866 56 666676444
No 352
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.34 E-value=0.0001 Score=93.35 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=47.1
Q ss_pred ccEEEEeEEEECCCC--CCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHH--------hhhcCCCCCe
Q 041277 1000 GNIELQNVHFAYPAR--PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLI--------ERFYDPLKGD 1060 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL--------~R~ydp~~G~ 1060 (1133)
+.|++++...-+-.. .+..|++|++|++++|+.++|+||+||||||+++.+ .|.|-|.++.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~ 700 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA 700 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc
Confidence 468888753322111 134689999999999999999999999999999999 7777776543
No 353
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.32 E-value=9.3e-05 Score=81.78 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=38.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC-eEEECCcccCCCC
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDPLKG-DVKIDDRDIRSYH 1072 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G-~I~IdG~dI~~i~ 1072 (1133)
++|+.+++||++||||||++..|.+.+.+++| +|.+-+.|.....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~ 148 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIA 148 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccch
Confidence 47999999999999999999999999998788 7887777765433
No 354
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.30 E-value=6.3e-05 Score=90.67 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=43.1
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~ 425 (1133)
.+++++++++ +|+.++|+||+|+|||||+++|++...+..|+|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 3678888888 89999999999999999999999999999999887773
No 355
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.30 E-value=4.6e-05 Score=77.76 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=32.9
Q ss_pred cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC
Q 041277 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059 (1133)
Q Consensus 1024 sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G 1059 (1133)
+|++++|+.++|+||+|+|||||++++.+.+.|.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 467889999999999999999999999999987777
No 356
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.28 E-value=5.2e-05 Score=78.64 Aligned_cols=58 Identities=14% Similarity=0.322 Sum_probs=40.0
Q ss_pred EEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhh----hcC----CCCCeEEECCccc
Q 041277 1008 HFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER----FYD----PLKGDVKIDDRDI 1068 (1133)
Q Consensus 1008 sF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R----~yd----p~~G~I~IdG~dI 1068 (1133)
+|+||+ -..+++++|++.+++ +|++||++|+|||||++.+.+ -|. ++.+.+.+||.++
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 467764 235899999998887 689999999999999999986 233 3457788887543
No 357
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.28 E-value=5.9e-05 Score=95.17 Aligned_cols=64 Identities=11% Similarity=0.189 Sum_probs=45.1
Q ss_pred CccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccc
Q 041277 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEP 1087 (1133)
Q Consensus 1022 ~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp 1087 (1133)
..++.+++|+.+.|+||+|+|||||+++|.+... .+-+.+++-++.+--.....+++..++|.+
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a 566 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESEANVREIFDKA 566 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTTCCTTTSSHHHHHHHHHH
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhhhhcCccHHHHHHHHHHH
Confidence 4566788888899999999999999999998875 356777777765443333344455555543
No 358
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.27 E-value=0.0014 Score=72.35 Aligned_cols=70 Identities=21% Similarity=0.199 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHH----------HHHHHHHHHHHh-----CCCeEEEEecCcchh----
Q 041277 501 SGGQKQRIAIARAIIKAPRILLLDEATSALDSES----------ERVVQEALDKAV-----VGRTTIIIAHRLSTI---- 561 (1133)
Q Consensus 501 SgGqkqri~iARal~~~~~illlDE~ts~lD~~~----------~~~i~~~l~~~~-----~~~t~i~itH~~~~~---- 561 (1133)
++++++|-.+++|...+|.++++||+.+-++... ...+...+.... .+..+|.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 4677888888888888999999999988776432 122333333321 123456678876433
Q ss_pred -hcCCEEEEE
Q 041277 562 -RNADVIAVV 570 (1133)
Q Consensus 562 -~~~d~i~~l 570 (1133)
+.+|+++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 346665444
No 359
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.25 E-value=6.3e-05 Score=90.67 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=50.2
Q ss_pred EEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccc
Q 041277 1004 LQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALV 1083 (1133)
Q Consensus 1004 f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV 1083 (1133)
.++|..+|. +..+++++++++ +|+.+.|+||+|+||||++++|.+...+..|+|.++|.....--....|+.++.+
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 455555552 234678889988 8999999999999999999999999999999999988543222223344566666
Q ss_pred cccc
Q 041277 1084 SQEP 1087 (1133)
Q Consensus 1084 ~Qdp 1087 (1133)
+|..
T Consensus 162 ~~~~ 165 (543)
T 3m6a_A 162 PGRI 165 (543)
T ss_dssp --CH
T ss_pred chHH
Confidence 6543
No 360
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.25 E-value=5.2e-05 Score=85.84 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=46.3
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS 1070 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~ 1070 (1133)
.+++++++++++|.+++|+|++|+||||+++.|.+.+.+.+|++.+-+.|...
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 37899999999999999999999999999999999998888888776666543
No 361
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.24 E-value=5.8e-05 Score=79.22 Aligned_cols=45 Identities=29% Similarity=0.355 Sum_probs=40.1
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC--eEEECCcccC
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG--DVKIDDRDIR 1069 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G--~I~IdG~dI~ 1069 (1133)
+.+++|..+.|+|++||||||+++.|.+.+.|..| .+.+||-+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 45788999999999999999999999999988888 8999976654
No 362
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.23 E-value=2.8e-05 Score=81.00 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=39.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh------hcCCCCCeEEECCc--ccCCCCh--------hHHhhcccccccccccccccHH
Q 041277 1032 STALVGQSGSGKSTIIGLIER------FYDPLKGDVKIDDR--DIRSYHL--------RSLRRHIALVSQEPTLFAGTIR 1095 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R------~ydp~~G~I~IdG~--dI~~i~l--------~~LR~~isiV~Qdp~LF~gTIr 1095 (1133)
.|+|+|++||||||++++|.+ +.+|..|...++.. |-...+. +.+++....+.|+.+++++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 44554444333221 1111110 1123334566788889999888
Q ss_pred HHhcc
Q 041277 1096 ENIAY 1100 (1133)
Q Consensus 1096 eNI~~ 1100 (1133)
+|+.|
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 77654
No 363
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.23 E-value=0.00011 Score=86.39 Aligned_cols=61 Identities=28% Similarity=0.366 Sum_probs=40.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhc------------CCCCCeEEECCcccCCCChhHHhhccccccccccccc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFY------------DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFA 1091 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~y------------dp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~ 1091 (1133)
-++||||++|+|||||++.|.+.. ||.+|.+.+||.++.-++..-+|+..++.+|+...|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 379999999999999999999874 3778999999987766666666777777777666554
No 364
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.23 E-value=0.00036 Score=77.96 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=65.7
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENI 457 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni 457 (1133)
.|+++.--+++|+++.|.|++|+|||||+.-++.-.-.. | ..+.|++=|
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g------------------~~vl~~slE------------ 105 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D------------------DVVNLHSLE------------ 105 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-T------------------CEEEEEESS------------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-C------------------CeEEEEECC------------
Confidence 577777669999999999999999999988887532111 1 123333322
Q ss_pred hcCCCCCCHHHHHHHHH----HhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccC
Q 041277 458 LFGKEDASMEEVIEAAK----ASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529 (1133)
Q Consensus 458 ~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~ 529 (1133)
.+.+++.+-+. ...+.++. .|. ..||++++||++.|...+.++++++.|+|...
T Consensus 106 ------~s~~~l~~R~~~~~~~i~~~~l~----~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 106 ------MGKKENIKRLIVTAGSINAQKIK----AAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp ------SCHHHHHHHHHHHHTTCCHHHHH----SCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred ------CCHHHHHHHHHHHHcCCCHHHHh----cCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 22233222111 11111111 110 12899999999999999999999999998643
No 365
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.23 E-value=7.6e-05 Score=91.41 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=56.0
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCC-CeEEECCcccCCCChhHHhhccccccccc
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK-GDVKIDDRDIRSYHLRSLRRHIALVSQEP 1087 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~-G~I~IdG~dI~~i~l~~LR~~isiV~Qdp 1087 (1133)
.+++++++.+++|+.+.|+||+|+||||++++|.++..+.. |.+.+++.+.... ...++++||..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~ 113 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQ 113 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecch
Confidence 48899999999999999999999999999999999999887 8899988876544 34577776654
No 366
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.19 E-value=0.002 Score=68.72 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
.++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997665554
No 367
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.17 E-value=0.0002 Score=76.10 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=32.7
Q ss_pred ccCccEEee---CCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 1020 FEGFSIKIE---AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 1020 L~~isl~I~---~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
|.++|++++ +|..++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 455555555 8999999999999999999999999988 7777644
No 368
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.17 E-value=7.1e-05 Score=84.77 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=44.6
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeec
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI 427 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~ 427 (1133)
.+++++++++++|.+++|+|++|+||||+++.|++.+.+..|+|.+-+.|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 378899999999999999999999999999999999988888776655443
No 369
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.17 E-value=0.00011 Score=88.34 Aligned_cols=72 Identities=17% Similarity=0.361 Sum_probs=54.9
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh----------------------c-C---------------CCCCe
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF----------------------Y-D---------------PLKGD 1060 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~----------------------y-d---------------p~~G~ 1060 (1133)
.++++++++.|| ..+|||+||||||||+.+|.-+ + + ..+++
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~ 128 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCE
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcE
Confidence 468899999999 9999999999999999999554 4 2 23578
Q ss_pred EEECCcccCCCChhHHhhc-cccccccccccc
Q 041277 1061 VKIDDRDIRSYHLRSLRRH-IALVSQEPTLFA 1091 (1133)
Q Consensus 1061 I~IdG~dI~~i~l~~LR~~-isiV~Qdp~LF~ 1091 (1133)
++|||.++..-.+.++-.. +.+++|+-.++.
T Consensus 129 ~~ing~~v~~~~l~~~~~~li~i~~q~~~~~l 160 (517)
T 4ad8_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL 160 (517)
T ss_dssp EESSSSBCCHHHHHHHHTTTEEEESGGGGGTT
T ss_pred EEECCEECCHHHHHHHhhhheEEeCCchHHhc
Confidence 9999998865445554443 578899865543
No 370
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.16 E-value=0.00017 Score=76.53 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=31.8
Q ss_pred ccceeEEee---CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEE
Q 041277 379 FKDFCLTIP---AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL 422 (1133)
Q Consensus 379 l~~i~l~i~---~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~ 422 (1133)
|.++|+.++ +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566666665 8999999999999999999999999988 666643
No 371
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.15 E-value=7.3e-05 Score=85.43 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=33.4
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhh--hcCCCCCeEE
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER--FYDPLKGDVK 1062 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R--~ydp~~G~I~ 1062 (1133)
.+|++++++++ .|++||++|||||||++.|.+ |.++.+|.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 47899999999 999999999999999999999 7777777654
No 372
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.13 E-value=0.0021 Score=69.47 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=29.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~ 425 (1133)
.++++++..++| +.|+||+|+||||++++|++.+... -+.+++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~ 79 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence 345555555555 8899999999999999999987432 3555543
No 373
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.12 E-value=0.0002 Score=72.32 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcc
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRD 1067 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~d 1067 (1133)
.|+.++|+|++||||||++++|.+.+.+ +.+|+-+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~d~ 37 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDSDQ 37 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEeccH
Confidence 4788999999999999999999998754 6777533
No 374
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.12 E-value=0.00015 Score=82.21 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=37.1
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS 1070 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~ 1070 (1133)
+++.+|||+|++|||||||++.|.+...+.+|+|.|.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4567899999999999999999999998889999888877654
No 375
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.12 E-value=0.00063 Score=72.52 Aligned_cols=137 Identities=17% Similarity=0.234 Sum_probs=71.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcc-ccHHHHHhcCCCCC
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDA 464 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~~~~ 464 (1133)
+.+|+.++++||+||||||++.+++.......|. ...++++.+.|.... .++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4578999999999999999888765432111111 124677888886543 36777765321100
Q ss_pred CHHHHHHHHHHhchHHHHHhCCCcccccccCCC---CCCChHHHHHHHHHHHHhhCCCEEEEeCccc-CCChHHHHHHHH
Q 041277 465 SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG---VQMSGGQKQRIAIARAIIKAPRILLLDEATS-ALDSESERVVQE 540 (1133)
Q Consensus 465 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g---~~LSgGqkqri~iARal~~~~~illlDE~ts-~lD~~~~~~i~~ 540 (1133)
- ....+. ....+....... .--+.|+-.+.. +.-+++-+++++||+-. ++|........+
T Consensus 137 ~-------~~~~g~-------~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 137 P-------GKSCGY-------SVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp T-------TSSEEE-------EETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred c-------CceEEE-------eechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 0 000000 000000110000 012456665553 34688999999999976 476665533333
Q ss_pred HHHHHhCC-CeEEEE
Q 041277 541 ALDKAVVG-RTTIII 554 (1133)
Q Consensus 541 ~l~~~~~~-~t~i~i 554 (1133)
.+.....+ +++++.
T Consensus 201 ~i~~~~~~~~~il~S 215 (235)
T 3llm_A 201 DVVQAYPEVRIVLMS 215 (235)
T ss_dssp HHHHHCTTSEEEEEE
T ss_pred HHHhhCCCCeEEEEe
Confidence 33333333 344443
No 376
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.11 E-value=6.8e-05 Score=77.92 Aligned_cols=74 Identities=23% Similarity=0.353 Sum_probs=45.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC-CCC-h--hHHhhcccccccccccccccHHHHhccCCCCCC
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR-SYH-L--RSLRRHIALVSQEPTLFAGTIRENIAYGASDEI 1106 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~-~i~-l--~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~ 1106 (1133)
..|+|+|++||||||+.++|.+. |-..||.-++. +.. - +.+++.+ |+.+. +|++ +|..++.. ..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~~~~~~~~~~~~i~~~~----~~~~~-~g~i-~~~~l~~~-~~ 76 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDALAARARENKEEELKRLF----PEAVV-GGRL-DRRALARL-VF 76 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHHHHHHHHHTHHHHHHHC----GGGEE-TTEE-CHHHHHHH-HT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHHHHHhcCChHHHHHHHH----HHHHh-CCCc-CHHHHHHH-Hh
Confidence 57999999999999999999996 77778765441 110 0 2333332 55555 6777 55444321 12
Q ss_pred CHHHHHHHHH
Q 041277 1107 DESEIVEAAK 1116 (1133)
Q Consensus 1107 sdeei~~Al~ 1116 (1133)
++++.++.++
T Consensus 77 ~~~~~~~~l~ 86 (203)
T 1uf9_A 77 SDPERLKALE 86 (203)
T ss_dssp TSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 3445555554
No 377
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.11 E-value=0.00022 Score=82.00 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=26.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
+++..+.|.||+|+|||||++.+.+...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999987654
No 378
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.09 E-value=0.00028 Score=82.88 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=41.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccC------------CCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHHHHH
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYA------------PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENI 457 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eni 457 (1133)
.++|+|++|+|||||++.|+|... +.+|.+.++|.++.-++....++..++.+|....|.. +..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999853 6789999999877555544444555555565544432 334444
Q ss_pred h
Q 041277 458 L 458 (1133)
Q Consensus 458 ~ 458 (1133)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 3
No 379
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.07 E-value=0.00016 Score=91.33 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=41.6
Q ss_pred ccEEEEeEEEECC------CCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1000 GNIELQNVHFAYP------ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~------~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+.|++++. ++| ...+..|++|+||++++|+.++|+||+||||||+++.+.++
T Consensus 639 ~~i~i~~~--rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 639 RKIVIKNG--RHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CEEEEEEE--CCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CcEEEEec--cchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 45777763 454 11235699999999999999999999999999999998643
No 380
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.06 E-value=0.00012 Score=76.75 Aligned_cols=43 Identities=35% Similarity=0.294 Sum_probs=37.8
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc--EEEECCee
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG--EIILDGVS 426 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G--~i~~~g~~ 426 (1133)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.++|.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45778999999999999999999999999988888 88887543
No 381
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.06 E-value=0.0012 Score=73.96 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
++..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35679999999999999999999876543
No 382
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.04 E-value=0.00027 Score=78.42 Aligned_cols=141 Identities=18% Similarity=0.155 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEEC-CeecCCCCHHHHhhhceEEecCCCC--ccccHHHHHhcCCCCC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD-GVSIDKLQLKWLRSQMGLVSQEPAL--FATSIKENILFGKEDA 464 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~-g~~~~~~~~~~~r~~i~~v~Q~~~l--~~~ti~eni~~~~~~~ 464 (1133)
++.+++|+|++|+|||||++.|.|.- +.+. +.+-. ..++..+++.++..- |-+|. | .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDTp------G---~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDTP------G---L 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESSS------S---C
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEECc------C---C
Confidence 34489999999999999999999852 2221 11101 112346777776431 22221 1 1
Q ss_pred CHHHHHHHHHHhchHHHHHhCC---Cccccc--ccCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCcccCCChHH-HH
Q 041277 465 SMEEVIEAAKASNAHNFIRQLP---QQYDTQ--VGERGVQMSGGQKQRIAIARAII--KAPRILLLDEATSALDSES-ER 536 (1133)
Q Consensus 465 ~~~~~~~~~~~~~~~~~i~~l~---~g~~t~--~~~~g~~LSgGqkqri~iARal~--~~~~illlDE~ts~lD~~~-~~ 536 (1133)
.. +....... ++..... ...|-. +-+. ..+|+|++ .+++++. ..|.++++ +.+|... +.
T Consensus 67 ~~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~-~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~ 133 (301)
T 1ega_A 67 HM-EEKRAINR----LMNKAASSSIGDVELVIFVVEG-TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKA 133 (301)
T ss_dssp CH-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEET-TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHH
T ss_pred Cc-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeC-CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHH
Confidence 10 00011100 1111111 111211 1111 23898886 5667766 67888888 7888876 55
Q ss_pred HHHHHHHHHhC--C--CeEEEEecCcchh
Q 041277 537 VVQEALDKAVV--G--RTTIIIAHRLSTI 561 (1133)
Q Consensus 537 ~i~~~l~~~~~--~--~t~i~itH~~~~~ 561 (1133)
.+.+.+.++.+ + .++.+.+|+-.-+
T Consensus 134 ~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 134 DLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 66666665543 3 2445556654433
No 383
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.03 E-value=0.00027 Score=81.57 Aligned_cols=64 Identities=19% Similarity=0.132 Sum_probs=52.9
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH 1072 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~ 1072 (1133)
+..++++..|+... ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+..-.
T Consensus 77 ~v~~~L~~~~~~~~-----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~a 140 (425)
T 2ffh_A 77 TVYEALKEALGGEA-----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 140 (425)
T ss_dssp HHHHHHHHHTTSSC-----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHH
T ss_pred HHHHHHHHHhCCCc-----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCch
Confidence 44556677774321 678887 89999999999999999999999999999999999998886643
No 384
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.02 E-value=0.00029 Score=71.01 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG 424 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g 424 (1133)
.|+.++|+||+||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 45554
No 385
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.01 E-value=0.0003 Score=72.32 Aligned_cols=49 Identities=14% Similarity=0.401 Sum_probs=29.7
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhh----hcCC----CCCeEEECCccc
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER----FYDP----LKGDVKIDDRDI 1068 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R----~ydp----~~G~I~IdG~dI 1068 (1133)
+++++|++.++. +|++||++|+|||||++.+.+ -|.| +.+.+.++|..+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 689999998887 899999999999999999987 2333 346777887543
No 386
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.00 E-value=0.0051 Score=69.50 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=28.7
Q ss_pred cccceeEE---eeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 378 IFKDFCLT---IPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 378 ~l~~i~l~---i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.|+.+ +. +++|+++.|.||+|||||||...++...
T Consensus 50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555 33 8899999999999999999998877654
No 387
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.00 E-value=0.001 Score=68.87 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999876543
No 388
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.97 E-value=0.00038 Score=81.50 Aligned_cols=50 Identities=26% Similarity=0.426 Sum_probs=38.8
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G 1059 (1133)
.|+++|+ .+|.+ . . .+++.+|+.++|+||+|||||||+.++.++..|.++
T Consensus 6 ~l~~~~~-~~~~~---~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 6 GLELSNF-KSYRG---V---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEEESC-SSCCS---E---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEEeCE-EEECC---c---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 5788888 57731 1 1 255778999999999999999999999999988653
No 389
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.96 E-value=0.00034 Score=70.58 Aligned_cols=41 Identities=20% Similarity=0.417 Sum_probs=31.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCC------------CCCeEEECCccc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDP------------LKGDVKIDDRDI 1068 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp------------~~G~I~IdG~dI 1068 (1133)
++|.+|+|||++|+|||||++.|.+...+ ..+.+.+||.++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 54 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 54 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEE
Confidence 47899999999999999999999985321 135777887543
No 390
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.96 E-value=0.00023 Score=80.77 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=36.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID 428 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~ 428 (1133)
+++.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 357799999999999999999999999999998888776654
No 391
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.95 E-value=0.00022 Score=74.29 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=26.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
...+|.+++|+|||||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998774
No 392
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.91 E-value=0.00053 Score=77.59 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=31.1
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhh
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
.+++++|++++| .++|+||+||||||++.++..
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 468999999999 999999999999999999986
No 393
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.91 E-value=0.0004 Score=70.85 Aligned_cols=75 Identities=21% Similarity=0.392 Sum_probs=54.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhhc-------------CCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhc
Q 041277 1033 TALVGQSGSGKSTIIGLIERFY-------------DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIA 1099 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~y-------------dp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~ 1099 (1133)
|.|+||||||||||++.|..-+ +|..|+ +||+|-.=++.+...+.+. ++-+|-.+.+..| .
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i~---~g~flE~~~~~g~-~ 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMIK---NNEFIEWAQFSGN-Y 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHH---TTCEEEEEEETTE-E
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHHH---cCCEEEEEEEcCc-e
Confidence 6799999999999998886443 245676 5899999999999887654 7777777777666 3
Q ss_pred cCCCCCCCHHHHHHHHHH
Q 041277 1100 YGASDEIDESEIVEAAKA 1117 (1133)
Q Consensus 1100 ~g~~~~~sdeei~~Al~~ 1117 (1133)
||- +-++|.++++.
T Consensus 78 YGt----~~~~v~~~l~~ 91 (186)
T 1ex7_A 78 YGS----TVASVKQVSKS 91 (186)
T ss_dssp EEE----EHHHHHHHHHH
T ss_pred eee----ecceeeehhhC
Confidence 653 33455555443
No 394
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.87 E-value=0.00018 Score=77.14 Aligned_cols=68 Identities=10% Similarity=0.039 Sum_probs=45.4
Q ss_pred cccCc-cEEeeCCCEEEEEcCCCCCHHHHH-HHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccc
Q 041277 1019 IFEGF-SIKIEAGKSTALVGQSGSGKSTII-GLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEP 1087 (1133)
Q Consensus 1019 vL~~i-sl~I~~Ge~vaIVG~SGSGKSTL~-~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp 1087 (1133)
.|+++ .--+++|+.++|+||+||||||++ +++........+.+++++.+- .-.+....+++++.+|+.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~~~~~~ 80 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGWDVKPY 80 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTCCCHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCCCHHHH
Confidence 45665 567999999999999999999995 555666655555666665432 111222234578888764
No 395
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.84 E-value=0.0003 Score=72.78 Aligned_cols=42 Identities=21% Similarity=0.428 Sum_probs=31.2
Q ss_pred EEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 367 QFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 367 ~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++|++- ..+++++|++.+++ .++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 4566643 35899999998887 588999999999999999986
No 396
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.84 E-value=0.0003 Score=77.64 Aligned_cols=64 Identities=22% Similarity=0.218 Sum_probs=50.8
Q ss_pred EEEEeEEEECCCCCCCccccC-ccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCC
Q 041277 1002 IELQNVHFAYPARPDVMIFEG-FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY 1071 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~-isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i 1071 (1133)
+..+++...|+... ++ ++++.+ |+.++++|++|+||||++..|.+.+.+..|++.+.+.|...-
T Consensus 75 ~~~~~l~~~~~~~~-----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 75 IVYDELSNLFGGDK-----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHHHTTCSC-----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHHHhcccc-----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 33455555664221 45 788876 999999999999999999999999998889999988887653
No 397
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.83 E-value=0.00065 Score=66.78 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=25.6
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
++..+++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666665 899999999999999999973
No 398
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.82 E-value=0.00073 Score=76.12 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=50.2
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeE-EECCcccCCCChhHHhhccccccccccccc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV-KIDDRDIRSYHLRSLRRHIALVSQEPTLFA 1091 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I-~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~ 1091 (1133)
=+++|+.+.|.||+|||||||+..+.+...+..|.+ +||+.+..+ ....+++++.+|+..+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i~~ 120 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLISQ 120 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEEEC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhhhh
Confidence 489999999999999999999999999888777765 787765432 235678899888766543
No 399
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.81 E-value=0.00049 Score=75.47 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=27.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.+++|+.++|+||+|||||||+..+.+...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999998765
No 400
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.77 E-value=0.00012 Score=77.43 Aligned_cols=55 Identities=22% Similarity=0.217 Sum_probs=35.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc---CCCccEEE--------ECCeecCCCC-HHHHhhhceEEe
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFY---APLGGEII--------LDGVSIDKLQ-LKWLRSQMGLVS 443 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~---~~~~G~i~--------~~g~~~~~~~-~~~~r~~i~~v~ 443 (1133)
.-+++|.||+||||||+.+.|...+ ..+.|.++ -.|.++.+.. ...+.+.+.+.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~ 75 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGV 75 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEE
Confidence 4589999999999999999998543 34445442 2344444322 334555666666
No 401
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.75 E-value=0.00014 Score=82.32 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=55.1
Q ss_pred ccccCccEEeeCCCE--EEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC-CChhHHhhccccccccc
Q 041277 1018 MIFEGFSIKIEAGKS--TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS-YHLRSLRRHIALVSQEP 1087 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~--vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~-i~l~~LR~~isiV~Qdp 1087 (1133)
.+++.++..|+.|+. +.++||+|+||||+++++.+...+..+.+.+.+.+..+ .+.+.+|+.+..++|..
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~ 104 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTR 104 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBC
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhc
Confidence 478999999999998 99999999999999999999987777665555544433 35677888776666543
No 402
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.75 E-value=0.0042 Score=68.10 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
++++.-+.|.||+|+||||+++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999999865
No 403
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.74 E-value=0.0029 Score=70.09 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=27.5
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
+.++++..+.|.||+|+||||+++++++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4567899999999999999999999998763
No 404
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.71 E-value=0.00054 Score=77.97 Aligned_cols=37 Identities=27% Similarity=0.531 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC-----------CCCCeEEECCccc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD-----------PLKGDVKIDDRDI 1068 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd-----------p~~G~I~IdG~dI 1068 (1133)
+|+|||++|||||||++.|.+... |..|.|.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 389999999999999999998764 6779999999765
No 405
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.71 E-value=0.0011 Score=68.11 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=20.8
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
++++++++.++. .++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 789999998877 789999999999999999987
No 406
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.69 E-value=0.00035 Score=71.51 Aligned_cols=43 Identities=30% Similarity=0.279 Sum_probs=35.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeE-EECCccc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV-KIDDRDI 1068 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I-~IdG~dI 1068 (1133)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+-++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 446789999999999999999999999988777765 5666544
No 407
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.68 E-value=0.00088 Score=78.95 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=47.6
Q ss_pred CccEEeeCCCEEEEEcCCCCCHHHHHHHHhh--hcCCCCCeEEECCcccCCCChhHHh
Q 041277 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIER--FYDPLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 1022 ~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R--~ydp~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
-+++++.++..+.|+|.|||||||+++.|.. ++.++.|++.+.++|.+...+..+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~ 216 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE 216 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc
Confidence 3678889999999999999999999998876 7777789999989998876666554
No 408
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.67 E-value=0.0011 Score=70.40 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAP 415 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~ 415 (1133)
++..+.|.||+|+||||+++.+......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999886643
No 409
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.67 E-value=0.0022 Score=71.33 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=26.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccCCCccEE
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i 420 (1133)
..+.++||+|+||||+++.|.+...+.+|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999887766643
No 410
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.64 E-value=0.0007 Score=77.23 Aligned_cols=31 Identities=29% Similarity=0.592 Sum_probs=28.6
Q ss_pred ccCccEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1020 FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1020 L~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
++++++++++| .++|+||||||||||+.+|.
T Consensus 14 ~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 57889999999 78899999999999999987
No 411
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.63 E-value=0.00041 Score=76.58 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=42.7
Q ss_pred cc-eeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC
Q 041277 380 KD-FCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK 429 (1133)
Q Consensus 380 ~~-i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~ 429 (1133)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45 778776 99999999999999999999999999888999887776643
No 412
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.61 E-value=0.00092 Score=68.27 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=26.7
Q ss_pred CccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1022 ~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999876
No 413
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.0007 Score=76.83 Aligned_cols=43 Identities=12% Similarity=0.308 Sum_probs=32.7
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcch
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLST 560 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 560 (1133)
+++++++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6778888888888888776555566777776653
No 414
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.59 E-value=0.00087 Score=72.33 Aligned_cols=43 Identities=33% Similarity=0.391 Sum_probs=36.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS 1070 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~ 1070 (1133)
..+++..+.|+|++||||||+++.|.+.+. .|.+.+||-+++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 456778999999999999999999999875 3678899977754
No 415
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.58 E-value=0.0013 Score=66.12 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
++|..++|+|++|+|||||++.+.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 416
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.57 E-value=0.00086 Score=72.50 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=41.8
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccc
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQE 1086 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qd 1086 (1133)
.++++++..++| +.|+||+|+||||+++++.+..... -+.+++.++.+.......+++..++|+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEMFVGVGASRVRDMFEQ 99 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTTSCCCCCHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHHHhhhhhHHHHHHHHHH
Confidence 345555555655 8999999999999999999988643 588998887665433333344444443
No 417
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.55 E-value=0.00051 Score=86.61 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=53.9
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccc
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPT 1088 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~ 1088 (1133)
|.+++|+.+.|+||+|||||||+++|.+.+.+. -+.++|.++.........+++..++|++.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a~ 294 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEAE 294 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHHSSSSTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHhhhhhhhhHHHHHHHHHHHHH
Confidence 468899999999999999999999999988653 48899998887777788888999999874
No 418
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.52 E-value=0.00092 Score=75.89 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=41.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHH
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEI 1111 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei 1111 (1133)
++||||++|+|||||+++|.+.. + ++.+++.. |+..|+.+. .++++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE---ecChHHH
Confidence 58999999999999999999984 3 23333322 666676543 2456678
Q ss_pred HHHHHHcchHH
Q 041277 1112 VEAAKAANAHD 1122 (1133)
Q Consensus 1112 ~~Al~~a~l~d 1122 (1133)
..+++.++.++
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88887777654
No 419
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.50 E-value=0.00026 Score=80.62 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=36.0
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCe
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~ 1060 (1133)
..|.|.|+|++..|.. ..++++++|+| +|||++|+|||||++.|++.-.+..|.
T Consensus 14 ~~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 14 TPGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred CCceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3578999999988852 34789999977 999999999999999998765444443
No 420
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.44 E-value=0.0012 Score=68.48 Aligned_cols=36 Identities=31% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR 1069 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~ 1069 (1133)
...|+|+|++||||||+++.|.+.+ |...+|+-++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~~ 53 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDALH 53 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcCc
Confidence 4689999999999999999999877 56677766553
No 421
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.44 E-value=0.0013 Score=75.04 Aligned_cols=41 Identities=24% Similarity=0.423 Sum_probs=34.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhh-----------cCCCCCeEEECCc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERF-----------YDPLKGDVKIDDR 1066 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~-----------ydp~~G~I~IdG~ 1066 (1133)
.+..|.++||||++|+|||||++.|.+- .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678899999999999999999999998 6788898888764
No 422
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.41 E-value=0.0014 Score=66.77 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=26.7
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 381 ~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
No 423
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.40 E-value=0.0011 Score=67.63 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=31.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i 420 (1133)
..++|.+++|+|++||||||+.+.|.+.+.+..|.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345789999999999999999999999988777765
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.39 E-value=0.0017 Score=63.68 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=26.0
Q ss_pred cCccEEeeCCCEEEEEcCCCCCHHHHHHHHh-hhcC
Q 041277 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIE-RFYD 1055 (1133)
Q Consensus 1021 ~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~-R~yd 1055 (1133)
++.+++..+| ..+|+||+|||||||+.+|. -+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4445555555 78999999999999999886 4444
No 425
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.39 E-value=0.002 Score=68.26 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=32.1
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 561 (1133)
.+|.++++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999866 77777777777776544456778888876543
No 426
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.36 E-value=0.0017 Score=65.53 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCC---CCeEEECCccc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPL---KGDVKIDDRDI 1068 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~---~G~I~IdG~dI 1068 (1133)
..++|+|+|||||||+++.|.+...+. -|.|..++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 578999999999999999999876543 37788877553
No 427
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.25 E-value=0.011 Score=57.43 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCC
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAP 415 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~ 415 (1133)
+.+.-+.|.||+|+|||++.+.|......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 35567899999999999999999876544
No 428
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.24 E-value=0.0017 Score=67.59 Aligned_cols=30 Identities=37% Similarity=0.515 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR 1066 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~ 1066 (1133)
.+||+|++||||||+.+.|.++ |...+|+-
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchH
Confidence 5899999999999999999983 66666653
No 429
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.22 E-value=0.0026 Score=63.38 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
-+|+|||++|+|||||++.|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999874
No 430
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.21 E-value=0.0023 Score=64.45 Aligned_cols=38 Identities=24% Similarity=0.172 Sum_probs=29.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCC---ccEEEECCee
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVS 426 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~---~G~i~~~g~~ 426 (1133)
-..++|+|+||||||||++.|.+.+.+. -|.|..++++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999886543 2566665543
No 431
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.19 E-value=0.00041 Score=78.99 Aligned_cols=58 Identities=29% Similarity=0.195 Sum_probs=36.1
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG 424 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g 424 (1133)
.+.+.++|++..|.. +.++++++|+| +|+|++|+|||||++.|.+...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 456888888888853 34789999977 99999999999999999887655555544333
No 432
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.17 E-value=0.0016 Score=70.13 Aligned_cols=42 Identities=31% Similarity=0.482 Sum_probs=34.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID 428 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~ 428 (1133)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+++..++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 456778999999999999999999999875 356778875553
No 433
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.13 E-value=0.007 Score=71.24 Aligned_cols=57 Identities=9% Similarity=0.142 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCc-ccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEA-TSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~-ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 561 (1133)
+.|++....++..+.+++++|+... +.++... ...+.+.+++ .++.+|++.+..+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 3588888889999999998777644 3444444 3445555543 478899998887654
No 434
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.12 E-value=0.0017 Score=67.20 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~ 425 (1133)
..+++|+|++||||||+.+.|.+.+ |...+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 5689999999999999999999876 45555543
No 435
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.11 E-value=0.0027 Score=72.35 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=33.4
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhc-----------cCCCccEEEECCe
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRF-----------YAPLGGEIILDGV 425 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~-----------~~~~~G~i~~~g~ 425 (1133)
.+..|..++|||++|+|||||++.|.|. .+|+.|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6777888877653
No 436
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.09 E-value=0.0022 Score=65.28 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhh-----------cCCCCCeEEECCcc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERF-----------YDPLKGDVKIDDRD 1067 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~-----------ydp~~G~I~IdG~d 1067 (1133)
-+|++||++|+|||||++.|.+- .++..|.+.++|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 37999999999999999999873 23345667776643
No 437
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.09 E-value=0.00048 Score=71.38 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
No 438
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.08 E-value=0.0033 Score=65.24 Aligned_cols=30 Identities=27% Similarity=0.515 Sum_probs=24.9
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHH
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQ 410 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~ 410 (1133)
++.++++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 4456666665 99999999999999999986
No 439
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.99 E-value=0.0053 Score=61.08 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 440
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.96 E-value=0.045 Score=63.17 Aligned_cols=29 Identities=34% Similarity=0.556 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
++.+++++|++|+||||++..|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 45689999999999999999999887654
No 441
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.93 E-value=0.0053 Score=68.71 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=25.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
-+++|+++.|.||+|||||||+.-++.-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999888753
No 442
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.92 E-value=0.043 Score=58.94 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+..-+.|.||+|+||||+++.++..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34458899999999999999999865
No 443
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.92 E-value=0.012 Score=68.93 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=31.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
-|+.+.--+++|+++.|.|++|+|||||+.-++....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4666665689999999999999999999988876543
No 444
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.88 E-value=0.015 Score=66.29 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=30.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~ 425 (1133)
.+|..+.|.||+|+||||+++.+..........+.+++.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 456789999999999999999999988654445555443
No 445
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.86 E-value=0.0016 Score=72.57 Aligned_cols=37 Identities=32% Similarity=0.411 Sum_probs=33.6
Q ss_pred ccccCccEEeeCCCE--EEEEcCCCCCHHHHHHHHhhhc
Q 041277 1018 MIFEGFSIKIEAGKS--TALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~--vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.+++++++.+++|+. ++|+|++||||||+.++|.+..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 378899999999999 9999999999999999998854
No 446
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.85 E-value=0.0045 Score=62.84 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 447
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.85 E-value=0.0038 Score=68.61 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=35.0
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhh----hcCCCCCeEEECC
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER----FYDPLKGDVKIDD 1065 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R----~ydp~~G~I~IdG 1065 (1133)
++++..+.+ .|..++|+|+||+||||++..|.+ |..-+...|...|
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 578877777 889999999999999999998887 4433434444433
No 448
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.83 E-value=0.0018 Score=72.31 Aligned_cols=38 Identities=32% Similarity=0.343 Sum_probs=34.3
Q ss_pred ccccceeEEeeCCCE--EEEEcCCCCcHHHHHHHHHhccC
Q 041277 377 IIFKDFCLTIPAGKT--VALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~--~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
.+++++++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 378889999999999 99999999999999999998653
No 449
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.81 E-value=0.0039 Score=63.34 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+|+|||++|+|||||++.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 450
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.81 E-value=0.031 Score=63.36 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
++..-+.|.||+|+||||+++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999765
No 451
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.77 E-value=0.0047 Score=63.91 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 041277 1032 STALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+|+|+|++||||||+++.|.++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999983
No 452
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.75 E-value=0.005 Score=62.60 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.+|..++|+|++||||||+.+.|.+-+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
No 453
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.74 E-value=0.006 Score=61.99 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh-hh----cCCCCC----eEEECCcc
Q 041277 1032 STALVGQSGSGKSTIIGLIE-RF----YDPLKG----DVKIDDRD 1067 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~-R~----ydp~~G----~I~IdG~d 1067 (1133)
+|+|||++|+|||||++.+. +- |.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 78999999999999996554 43 667777 78888844
No 454
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.73 E-value=0.005 Score=70.97 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=45.3
Q ss_pred EEEECCCCCCCccccCccEEe---eCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1007 VHFAYPARPDVMIFEGFSIKI---EAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1007 VsF~Y~~~~~~~vL~~isl~I---~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
+.+.+... +.||+-|. +.. ..+..++|+|+|||||||+++.|...+.+..+.|.+- |.. -+...+.+.++
T Consensus 11 ~~~G~~~~-g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~--D~~-~~~~~~~~~~g 83 (392)
T 4ag6_A 11 IVLGKDRD-GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII--DPE-REYKEMCRKLG 83 (392)
T ss_dssp EEEEECTT-SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--ESS-CCSHHHHHHTT
T ss_pred cEEEEeCC-CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE--eCC-cCHHHHHHHcC
Confidence 34555322 34555555 222 2577889999999999999999988777777888773 322 23444554444
No 455
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.64 E-value=0.0072 Score=67.64 Aligned_cols=69 Identities=23% Similarity=0.319 Sum_probs=46.4
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhc-CC------CCCeEEECCcccCCCChhHHh---hcccccccccccccccHH
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFY-DP------LKGDVKIDDRDIRSYHLRSLR---RHIALVSQEPTLFAGTIR 1095 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y-dp------~~G~I~IdG~dI~~i~l~~LR---~~isiV~Qdp~LF~gTIr 1095 (1133)
-+++|+.+.|.||+||||||++..+..-. .| ..+.++||..+. ++.+.++ +++++-+++ +.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~~~-------~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDIDN-------VM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCHHH-------HH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCHHH-------Hh
Confidence 58999999999999999999997777543 34 345678876652 2344443 345554432 45
Q ss_pred HHhccCCC
Q 041277 1096 ENIAYGAS 1103 (1133)
Q Consensus 1096 eNI~~g~~ 1103 (1133)
+|+.+.++
T Consensus 174 ~~l~~~~~ 181 (324)
T 2z43_A 174 NNIYYIRA 181 (324)
T ss_dssp HTEEEEEC
T ss_pred ccEEEEeC
Confidence 78776543
No 456
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.64 E-value=0.0061 Score=61.46 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
|..|.|+|+|||||||+.+.|..-..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987553
No 457
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.61 E-value=0.0053 Score=63.54 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
.++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 458
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.59 E-value=0.0087 Score=67.43 Aligned_cols=36 Identities=31% Similarity=0.508 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhh-----------hcCCCCCeEEECC
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIER-----------FYDPLKGDVKIDD 1065 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R-----------~ydp~~G~I~IdG 1065 (1133)
|-+++|||++|+|||||++.|.+ -.+|+.|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 3478888888776
No 459
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.58 E-value=0.002 Score=67.35 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPL 1057 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~ 1057 (1133)
.|+|+|++||||||+++.|.+.+++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988754
No 460
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.54 E-value=0.018 Score=63.18 Aligned_cols=28 Identities=25% Similarity=0.282 Sum_probs=24.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
-+++|..+.|.||+|+|||||...++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999998753
No 461
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.52 E-value=0.055 Score=61.23 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
-+++|+++.|.||+|+|||||+.-++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 46899999999999999999997776543
No 462
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.50 E-value=0.0078 Score=60.65 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
.|..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 463
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.48 E-value=0.0054 Score=62.34 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 464
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.47 E-value=0.0062 Score=61.84 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCC
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAP 415 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~ 415 (1133)
.++|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999986544
No 465
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.47 E-value=0.0066 Score=60.69 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.|+|+|++||||||+++.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987654
No 466
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.46 E-value=0.0072 Score=61.38 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
++..|.|+|++||||||+.+.|.+-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 467
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.42 E-value=0.11 Score=57.69 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+..-+.|.||+|+|||+|++.+++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999875
No 468
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.42 E-value=0.1 Score=57.54 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
++..+.|.||+|+||||+++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578899999999999999998765
No 469
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.41 E-value=0.0088 Score=68.42 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
..+..+.|.||+|+||||+++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999998764
No 470
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.38 E-value=0.005 Score=68.16 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
++.+|||||++|+|||||++.|.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999975
No 471
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.38 E-value=0.011 Score=66.56 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=41.7
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC-eEEECCcccCCCChhHHhhcccccccccccc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG-DVKIDDRDIRSYHLRSLRRHIALVSQEPTLF 1090 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G-~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF 1090 (1133)
-+++|+.+.|.||+|||||||+..+..-.....| -++||...- .+. ...+++++.+|+..++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~--~~~-~~a~~lG~~~~~l~i~ 119 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA--LDP-EYAKKLGVDTDSLLVS 119 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH-HHHHHTTCCGGGCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--cCH-HHHHHcCCCHHHeEEe
Confidence 5889999999999999999997766654433344 456665431 222 2355677777665544
No 472
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.37 E-value=0.0068 Score=60.51 Aligned_cols=36 Identities=25% Similarity=0.177 Sum_probs=27.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCCC---CeEEECCc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPLK---GDVKIDDR 1066 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~~---G~I~IdG~ 1066 (1133)
..++|+|++||||||++..|.+.+.... |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4689999999999999999988765432 45665543
No 473
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.34 E-value=0.0077 Score=69.41 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEEC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD 423 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~ 423 (1133)
.+..++|+|||||||||+++.++..+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 577899999999999999999999887888887763
No 474
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.32 E-value=0.032 Score=57.85 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=29.1
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLS 559 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 559 (1133)
.++.++++||.- .+++.....+.+.+.....+..+|+++++..
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 368899999964 4677766677777766444555666666553
No 475
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.31 E-value=0.0068 Score=61.34 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhh----cCCCCC----eEEECCcc
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERF----YDPLKG----DVKIDDRD 1067 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~----ydp~~G----~I~IdG~d 1067 (1133)
.=+|++||++|+|||||++.|.+- |.|+.| .+.+++..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~ 61 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEE
Confidence 347999999999999999999865 466777 66666643
No 476
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.30 E-value=0.0082 Score=60.00 Aligned_cols=23 Identities=35% Similarity=0.223 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 477
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.27 E-value=0.0094 Score=61.74 Aligned_cols=30 Identities=30% Similarity=0.576 Sum_probs=23.5
Q ss_pred cCccEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1021 ~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
++.++...+| ..+|+||+|||||||+.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3445555554 88999999999999998874
No 478
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.27 E-value=0.0036 Score=65.28 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
+++|+|++||||||+++.|.+.+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~ 30 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRS 30 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 68999999999999999999988654333
No 479
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.20 E-value=0.0098 Score=60.59 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
+|..+.|+|++||||||+.+.|..-+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999988543
No 480
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.18 E-value=0.0094 Score=60.61 Aligned_cols=44 Identities=32% Similarity=0.560 Sum_probs=30.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhccC-------------CCccEEEECCeecCCCCHHHHhh
Q 041277 392 VALVGGSGSGKSTVIALLQRFYA-------------PLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
+.|+||||||||||++.|...++ |-.|++ ||+|..-++.++..+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~ 60 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKS 60 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHH
Confidence 78999999999999999876542 334543 566655555554443
No 481
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.18 E-value=0.006 Score=70.43 Aligned_cols=42 Identities=31% Similarity=0.360 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS 1070 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~ 1070 (1133)
++..+++||++||||||++..|.+.+.+..++|.+-+.|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 578999999999999999999999999989999887777643
No 482
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.17 E-value=0.017 Score=58.55 Aligned_cols=34 Identities=41% Similarity=0.671 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh-c----cCCCcc----EEEECC
Q 041277 391 TVALVGGSGSGKSTVIALLQR-F----YAPLGG----EIILDG 424 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~-~----~~~~~G----~i~~~g 424 (1133)
.++|+|++|+|||||++.+.+ . +.|+.| .+.++|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDG 64 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECC
Confidence 689999999999999976654 3 556655 444444
No 483
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.17 E-value=0.072 Score=71.02 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=31.2
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE-EECC
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI-ILDG 424 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i-~~~g 424 (1133)
+++|+.+.|.||+|+|||||+..++.......|.+ ++++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 89999999999999999999999987665444443 3344
No 484
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.16 E-value=0.013 Score=64.30 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCccc
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI 1068 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI 1068 (1133)
.|..+.|+|+|||||||+++.|..-++ .|.+.|++-++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEechHh
Confidence 356789999999999999999987553 46788886333
No 485
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.15 E-value=0.011 Score=60.87 Aligned_cols=26 Identities=27% Similarity=0.167 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+|..|+|+|++||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
No 486
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.14 E-value=0.011 Score=62.93 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.4
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhh
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
-++|..++|+|++||||||+.+.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999999987
No 487
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.13 E-value=0.012 Score=64.61 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG 424 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g 424 (1133)
+|..+.|+|||||||||+.+.|...++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987653 36677765
No 488
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.11 E-value=0.012 Score=62.72 Aligned_cols=28 Identities=32% Similarity=0.273 Sum_probs=23.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKG 1059 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G 1059 (1133)
+|+|||++|+|||||++.|.+-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999986554443
No 489
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.10 E-value=0.019 Score=60.06 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCc-----------chhhcCCEEEEEe
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL-----------STIRNADVIAVVQ 571 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~-----------~~~~~~d~i~~l~ 571 (1133)
+++++++||+-- ++.+.-+.+ ..+.+ .+.++|++-|+. +.+..||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665432222 22323 389999999932 2344699998875
No 490
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.05 E-value=0.013 Score=61.43 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhh
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
+-.|+|+|++||||||+++.|.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 491
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.00 E-value=0.046 Score=60.06 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
...+.+.||+|+|||+|.+.|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888999999999999999876
No 492
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.99 E-value=0.01 Score=66.86 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=45.8
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhc-CC------CCCeEEECCcccCCCChhHHhh---cccccccccccccccHH
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFY-DP------LKGDVKIDDRDIRSYHLRSLRR---HIALVSQEPTLFAGTIR 1095 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y-dp------~~G~I~IdG~dI~~i~l~~LR~---~isiV~Qdp~LF~gTIr 1095 (1133)
-+++|+.+.|+||+||||||++..+..-. .| ..+.++||..+. .+.+.+++ ++++-++ .+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~--~~~~~l~~~~~~~g~~~~-------~~l 188 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT--FRPDRLRDIADRFNVDHD-------AVL 188 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHcCCCHH-------HHH
Confidence 58999999999999999999998877642 22 345678887652 34444433 3443322 245
Q ss_pred HHhccCCC
Q 041277 1096 ENIAYGAS 1103 (1133)
Q Consensus 1096 eNI~~g~~ 1103 (1133)
+|+.+.++
T Consensus 189 ~~l~~~~~ 196 (343)
T 1v5w_A 189 DNVLYARA 196 (343)
T ss_dssp HTEEEEEC
T ss_pred hceeEeec
Confidence 77766543
No 493
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.99 E-value=0.0086 Score=60.58 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.++..|.|+|++||||||+++.|..-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998655
No 494
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.99 E-value=0.035 Score=64.79 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=28.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
-|+.+.--+++|+++.|.|++|+|||||+.-++.-
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 35555435899999999999999999998777653
No 495
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.99 E-value=0.012 Score=62.55 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.5
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
-++|.+++|+|++||||||+.+.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999999999754
No 496
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.96 E-value=0.011 Score=59.00 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 041277 1032 STALVGQSGSGKSTIIGLI 1050 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL 1050 (1133)
.++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 497
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.96 E-value=0.01 Score=61.07 Aligned_cols=32 Identities=44% Similarity=0.566 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~ 425 (1133)
..+++|+|++||||||+.+.|... |-..+|..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 357999999999999999999985 66666543
No 498
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.96 E-value=0.011 Score=60.37 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+++..|.|+|++||||||+.+.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998755
No 499
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.96 E-value=0.012 Score=60.36 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.++..|+|+|++||||||+.+.|.+-+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998755
No 500
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.94 E-value=0.0059 Score=62.74 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=25.8
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
-+.+++..|+|+|++||||||+.+.|.+.+
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345667899999999999999999998765
Done!