Query         041278
Match_columns 101
No_of_seqs    79 out of 81
Neff          3.1 
Searched_HMMs 46136
Date          Fri Mar 29 05:34:03 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041278hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF13456 RVT_3:  Reverse transc  98.4 4.6E-07   1E-11   55.9   4.7   47   49-95      1-47  (87)
  2 PRK13907 rnhA ribonuclease H;   97.7 4.4E-05 9.4E-10   51.9   3.9   44   45-88     37-80  (128)
  3 cd06222 RnaseH RNase H (RNase   97.1  0.0012 2.7E-08   40.7   4.6   46   45-90     37-82  (130)
  4 COG0328 RnhA Ribonuclease HI [  97.0   0.001 2.2E-08   49.9   3.9   42   45-86     39-80  (154)
  5 PRK07708 hypothetical protein;  96.2  0.0069 1.5E-07   46.8   4.1   43   46-88    115-159 (219)
  6 PRK07238 bifunctional RNase H/  95.5   0.019 4.1E-07   45.8   4.1   43   45-87     41-83  (372)
  7 PF00075 RNase_H:  RNase H;  In  94.8   0.052 1.1E-06   35.9   3.9   39   46-87     37-75  (132)
  8 KOG3752 Ribonuclease H [Replic  94.6   0.043 9.3E-07   46.6   4.0   41   45-85    252-292 (371)
  9 PRK06548 ribonuclease H; Provi  92.3    0.14   3E-06   38.2   2.9   40   47-87     40-79  (161)
 10 PRK00203 rnhA ribonuclease H;   90.0    0.43 9.3E-06   33.8   3.5   40   46-87     40-79  (150)
 11 PRK08719 ribonuclease H; Revie  88.7    0.39 8.4E-06   34.7   2.4   37   46-86     47-83  (147)
 12 PF11204 DUF2985:  Protein of u  86.9       1 2.2E-05   31.1   3.5   69   25-97      3-73  (81)
 13 COG3851 UhpB Signal transducti  37.0      77  0.0017   28.2   5.0   52   20-71    165-226 (497)
 14 PF00626 Gelsolin:  Gelsolin re  27.2      20 0.00044   21.6  -0.0   26   39-64     28-53  (76)
 15 COG4327 Predicted membrane pro  24.3      76  0.0016   23.0   2.4   28    2-31     25-53  (101)
 16 PRK10146 aminoalkylphosphonic   20.3 1.4E+02   0.003   19.3   2.9   28   45-78     92-119 (144)

No 1  
>PF13456 RVT_3:  Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=98.43  E-value=4.6e-07  Score=55.92  Aligned_cols=47  Identities=23%  Similarity=0.188  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhCCCcccccc
Q 041278           49 AFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNKRLLPPWFL   95 (101)
Q Consensus        49 aL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn~slVPW~L   95 (101)
                      ++.+|+.|...|++.|.+.|++++++||||+.++.++++..-.+..+
T Consensus         1 ~~~aE~~al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~   47 (87)
T PF13456_consen    1 PLEAEALALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRSEL   47 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---SCC
T ss_pred             CcHHHHHHHHHHHHHHHHCCCCEEEEEecCccccccccccccccccc
Confidence            46899999999999999999999999999999999998886554443


No 2  
>PRK13907 rnhA ribonuclease H; Provisional
Probab=97.73  E-value=4.4e-05  Score=51.92  Aligned_cols=44  Identities=14%  Similarity=0.242  Sum_probs=41.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhCC
Q 041278           45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNKR   88 (101)
Q Consensus        45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn~   88 (101)
                      +..+...+|+.|.+.|++.|.+.|.+++.+++||++|+..+++.
T Consensus        37 ~~~tn~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~~~~~~   80 (128)
T PRK13907         37 GTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKE   80 (128)
T ss_pred             cccCCcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHhHH
Confidence            56789999999999999999999999999999999999999764


No 3  
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication.  RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=97.10  E-value=0.0012  Score=40.71  Aligned_cols=46  Identities=22%  Similarity=0.064  Sum_probs=42.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhCCCc
Q 041278           45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNKRLL   90 (101)
Q Consensus        45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn~sl   90 (101)
                      ...+.+.+|+.|...|++.+.+.+-+++.++|||..++..+++...
T Consensus        37 ~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~~~~   82 (130)
T cd06222          37 GNTTNNRAELLALIEALELALELGGKKVNIYTDSQYVINALTGWYE   82 (130)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHhhcccc
Confidence            4668899999999999999999999999999999999999987643


No 4  
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=96.97  E-value=0.001  Score=49.88  Aligned_cols=42  Identities=21%  Similarity=0.022  Sum_probs=39.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhh
Q 041278           45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCN   86 (101)
Q Consensus        45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFk   86 (101)
                      +.+|.=.+|+.|++.|+|.|.+.|..++.|.|||++|+.++.
T Consensus        39 ~~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i~   80 (154)
T COG0328          39 GRTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGIT   80 (154)
T ss_pred             ecccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHH
Confidence            356777899999999999999999999999999999999987


No 5  
>PRK07708 hypothetical protein; Validated
Probab=96.20  E-value=0.0069  Score=46.78  Aligned_cols=43  Identities=9%  Similarity=0.017  Sum_probs=39.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhCCcc--eeeccchhHHHHHhhCC
Q 041278           46 ELTAFATKLIAIILAIEHASIRDWTM--LWIECDSPLTVHLCNKR   88 (101)
Q Consensus        46 ~anaL~aEL~gam~AiE~A~~~gW~n--LWLEsDS~LVvlAFkn~   88 (101)
                      ..|.-.+|+.|.+.|++.|.+.|.++  +.+++||++|+..++..
T Consensus       115 ~~TNN~AEy~Ali~aL~~A~e~g~~~~~V~I~~DSqlVi~qi~g~  159 (219)
T PRK07708        115 IYDNNEAEYAALYYAMQELEELGVKHEPVTFRGDSQVVLNQLAGE  159 (219)
T ss_pred             cccCcHHHHHHHHHHHHHHHHcCCCcceEEEEeccHHHHHHhCCC
Confidence            46888999999999999999999987  89999999999998654


No 6  
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=95.52  E-value=0.019  Score=45.75  Aligned_cols=43  Identities=21%  Similarity=0.104  Sum_probs=38.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278           45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK   87 (101)
Q Consensus        45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn   87 (101)
                      +.+|.-.+|+.|.+.|++.|.+.|-+++.+++||++|+....+
T Consensus        41 ~~~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS~lvi~~i~~   83 (372)
T PRK07238         41 GRATNNVAEYRGLIAGLEAAAELGATEVEVRMDSKLVVEQMSG   83 (372)
T ss_pred             CCCCchHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhCC
Confidence            4556678999999999999999999999999999999999765


No 7  
>PF00075 RNase_H:  RNase H;  InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids.  The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=94.77  E-value=0.052  Score=35.87  Aligned_cols=39  Identities=28%  Similarity=0.221  Sum_probs=32.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278           46 ELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK   87 (101)
Q Consensus        46 ~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn   87 (101)
                      ..+...+||.|++.|++ +. .. ..+.+-|||+.++.+..+
T Consensus        37 ~~s~~~aEl~Ai~~AL~-~~-~~-~~v~I~tDS~~v~~~l~~   75 (132)
T PF00075_consen   37 GQSNNRAELQAIIEALK-AL-EH-RKVTIYTDSQYVLNALNK   75 (132)
T ss_dssp             SECHHHHHHHHHHHHHH-TH-ST-SEEEEEES-HHHHHHHHT
T ss_pred             ccchhhhheehHHHHHH-Hh-hc-ccccccccHHHHHHHHHH
Confidence            45778999999999999 65 33 999999999999997765


No 8  
>KOG3752 consensus Ribonuclease H [Replication, recombination and repair]
Probab=94.64  E-value=0.043  Score=46.57  Aligned_cols=41  Identities=24%  Similarity=0.193  Sum_probs=37.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHh
Q 041278           45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLC   85 (101)
Q Consensus        45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAF   85 (101)
                      |..+.+.+||.|++.|+|.|.+++=+++-+-|||..++.+.
T Consensus       252 g~qtNnrAEl~Av~~ALkka~~~~~~kv~I~TDS~~~i~~l  292 (371)
T KOG3752|consen  252 GRQTNNRAELIAAIEALKKARSKNINKVVIRTDSEYFINSL  292 (371)
T ss_pred             CcccccHHHHHHHHHHHHHHHhcCCCcEEEEechHHHHHHH
Confidence            56689999999999999999999999999999999998765


No 9  
>PRK06548 ribonuclease H; Provisional
Probab=92.31  E-value=0.14  Score=38.17  Aligned_cols=40  Identities=18%  Similarity=0.069  Sum_probs=33.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278           47 LTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK   87 (101)
Q Consensus        47 anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn   87 (101)
                      .|.=.+||.|++.|+|.+. .+=..+-+-|||+.|+.++..
T Consensus        40 ~TNnraEl~Aii~aL~~~~-~~~~~v~I~TDS~yvi~~i~~   79 (161)
T PRK06548         40 ATNNIAELTAVRELLIATR-HTDRPILILSDSKYVINSLTK   79 (161)
T ss_pred             CCHHHHHHHHHHHHHHhhh-cCCceEEEEeChHHHHHHHHH
Confidence            5677899999999998654 344579999999999999974


No 10 
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=90.04  E-value=0.43  Score=33.76  Aligned_cols=40  Identities=20%  Similarity=0.045  Sum_probs=33.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278           46 ELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK   87 (101)
Q Consensus        46 ~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn   87 (101)
                      ..|.-.+||.|++.|++.+.+.  ..+.+=|||+.++.++..
T Consensus        40 ~~TN~~aEL~Ai~~AL~~~~~~--~~v~I~tDS~yvi~~i~~   79 (150)
T PRK00203         40 LTTNNRMELMAAIEALEALKEP--CEVTLYTDSQYVRQGITE   79 (150)
T ss_pred             CCcHHHHHHHHHHHHHHHcCCC--CeEEEEECHHHHHHHHHH
Confidence            3456679999999999988654  579999999999998864


No 11 
>PRK08719 ribonuclease H; Reviewed
Probab=88.68  E-value=0.39  Score=34.72  Aligned_cols=37  Identities=32%  Similarity=0.203  Sum_probs=32.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhh
Q 041278           46 ELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCN   86 (101)
Q Consensus        46 ~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFk   86 (101)
                      ..|.-.+||.|++.|+|.+.+.+    -+-|||++|+.+..
T Consensus        47 ~~Tnn~aEl~A~~~aL~~~~~~~----~i~tDS~yvi~~i~   83 (147)
T PRK08719         47 YTDNAELELLALIEALEYARDGD----VIYSDSDYCVRGFN   83 (147)
T ss_pred             CccHHHHHHHHHHHHHHHcCCCC----EEEechHHHHHHHH
Confidence            35888999999999999998764    59999999999983


No 12 
>PF11204 DUF2985:  Protein of unknown function (DUF2985);  InterPro: IPR021369  This eukaryotic family of proteins has no known function. 
Probab=86.86  E-value=1  Score=31.09  Aligned_cols=69  Identities=22%  Similarity=0.250  Sum_probs=43.6

Q ss_pred             hcccccchhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHh--hCCCcccccccc
Q 041278           25 FINAPMHGKYMIVKEIFFWIWELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLC--NKRLLPPWFLTH   97 (101)
Q Consensus        25 ~~~~~~~~~~~i~~~~f~~ig~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAF--kn~slVPW~LRN   97 (101)
                      |+..||.  ++++.-.+.....+.++.=-++|.+.|+-.  .++=++.|+|.||+...-.|  ..-.+.||..|.
T Consensus         3 ~~~tP~g--~~i~iy~~~V~~~Ga~lfllL~g~~~~~~~--~~s~r~~WiEi~sQILnALF~v~g~gl~P~R~~d   73 (81)
T PF11204_consen    3 WVKTPMG--FAITIYGLNVVAWGAMLFLLLCGMLNAMCH--NKSPRDIWIEIDSQILNALFTVMGFGLHPWRFRD   73 (81)
T ss_pred             chhchhh--HHHHHHHHHHHHHHHHHHHHHHccchhccC--CCccceEEEEehhHHHHHHHHHHhhccccHHHHH
Confidence            4555653  233332233334455666566666655433  77788999999999887777  455678998775


No 13 
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=37.03  E-value=77  Score=28.25  Aligned_cols=52  Identities=25%  Similarity=0.305  Sum_probs=39.4

Q ss_pred             Hhhhhhccccc--chhhHHHHHHHHHHhhhh--hHHHHH------HHHHHHHHHHHHhCCcc
Q 041278           20 MLSMSFINAPM--HGKYMIVKEIFFWIWELT--AFATKL------IAIILAIEHASIRDWTM   71 (101)
Q Consensus        20 ~~~~~~~~~~~--~~~~~i~~~~f~~ig~an--aL~aEL------~gam~AiE~A~~~gW~n   71 (101)
                      -|+-|+|+.|.  .+|..+.-.+||.||+..  .+-.|+      +-++=-|-.|...||.-
T Consensus       165 pL~~s~ihhpi~lr~k~lvw~~L~fiigll~ql~L~de~~rf~l~~l~lP~I~lA~~yGWQG  226 (497)
T COG3851         165 PLGPSLIHHPINLRGKHLVWYLLLFIIGLLLQLGLPDELSRFTLFCLALPIIALAWHYGWQG  226 (497)
T ss_pred             cCChhhcCCCcccccchHHHHHHHHHHHHHHHhcChHhhhhHhHHHHHHHHHHHHHHhcchH
Confidence            47889999999  999999999999998774  444554      33444456688888864


No 14 
>PF00626 Gelsolin:  Gelsolin repeat;  InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=27.19  E-value=20  Score=21.56  Aligned_cols=26  Identities=35%  Similarity=0.431  Sum_probs=22.9

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHH
Q 041278           39 EIFFWIWELTAFATKLIAIILAIEHA   64 (101)
Q Consensus        39 ~~f~~ig~anaL~aEL~gam~AiE~A   64 (101)
                      .||.|+|..+.......|...|-++-
T Consensus        28 ~i~vW~G~~~~~~e~~~a~~~a~~~~   53 (76)
T PF00626_consen   28 EIFVWVGKKSSPEEKAFAAQLAQELL   53 (76)
T ss_dssp             EEEEEEHTTSHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeccCCHHHHHHHHHHHHHhh
Confidence            57889999999999999998888887


No 15 
>COG4327 Predicted membrane protein [Function unknown]
Probab=24.35  E-value=76  Score=22.98  Aligned_cols=28  Identities=43%  Similarity=0.721  Sum_probs=23.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhh-hhhcccccc
Q 041278            2 VLVWFLVMLYVMHIVLKRMLS-MSFINAPMH   31 (101)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   31 (101)
                      .+|||||-.-|  |.+-|-|| |.|..-|.+
T Consensus        25 L~vwflVSfvv--i~fa~alst~rifg~pf~   53 (101)
T COG4327          25 LGVWFLVSFVV--ILFARALSTMRIFGWPFG   53 (101)
T ss_pred             HHHHHHHHHHH--HHHHHhhcccEEeccchh
Confidence            47999998877  88889999 888887754


No 16 
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=20.32  E-value=1.4e+02  Score=19.31  Aligned_cols=28  Identities=14%  Similarity=-0.067  Sum_probs=21.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccch
Q 041278           45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDS   78 (101)
Q Consensus        45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS   78 (101)
                      |+++.+..      .+++.|.++|-..++|++..
T Consensus        92 GiG~~Ll~------~~~~~a~~~~~~~i~l~~~~  119 (144)
T PRK10146         92 NVGSKLLA------WAEEEARQAGAEMTELSTNV  119 (144)
T ss_pred             CHHHHHHH------HHHHHHHHcCCcEEEEecCC
Confidence            56666654      45677889999999999874


Done!