Query 041278
Match_columns 101
No_of_seqs 79 out of 81
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 09:01:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 98.0 5.6E-06 1.9E-10 54.7 4.1 43 45-87 42-84 (141)
2 3u3g_D Ribonuclease H, RNAse H 98.0 7.3E-06 2.5E-10 53.6 4.0 44 45-88 41-88 (140)
3 2ehg_A Ribonuclease HI; RNAse 97.6 6.4E-05 2.2E-09 50.9 4.7 43 46-88 45-87 (149)
4 2qkb_A Ribonuclease H1, HS-RNA 97.5 0.0001 3.5E-09 50.7 4.4 43 45-87 46-88 (154)
5 1zbf_A Ribonuclease H-related 96.6 0.0016 5.6E-08 45.9 3.4 43 45-88 47-89 (142)
6 1jl1_A Ribonuclease HI; RNAse 96.3 0.0015 5.2E-08 45.1 1.7 41 45-87 40-80 (155)
7 2e4l_A Ribonuclease HI, RNAse 96.2 0.0025 8.4E-08 44.3 2.4 40 46-87 43-82 (158)
8 3h08_A RNH (ribonuclease H); R 96.0 0.0031 1.1E-07 42.6 2.4 40 46-87 41-80 (146)
9 2kq2_A Ribonuclease H-related 96.0 0.0058 2E-07 42.1 3.6 38 47-85 48-85 (147)
10 1ril_A Ribonuclease H; hydrola 95.9 0.0027 9.3E-08 44.6 1.8 41 45-87 44-84 (166)
11 4htu_A Ribonuclease H, RNAse H 95.5 0.01 3.5E-07 42.2 3.3 41 45-86 41-81 (134)
12 2lsn_A Reverse transcriptase; 94.6 0.027 9.4E-07 40.3 3.4 42 45-87 52-93 (165)
13 3qio_A GAG-POL polyprotein; RN 93.4 0.05 1.7E-06 37.8 2.8 39 45-87 45-83 (150)
14 3p1g_A Xenotropic murine leuke 91.8 0.14 4.7E-06 36.4 3.4 37 46-85 60-96 (165)
15 2zd1_A Reverse transcriptase/r 88.9 0.27 9.2E-06 40.0 3.2 39 45-87 472-510 (557)
16 1mu2_A HIV-2 RT; HIV-2 reverse 86.7 0.47 1.6E-05 38.6 3.3 38 46-87 470-507 (555)
17 2vik_A Villin 14T; actin-bindi 48.1 2.9 9.8E-05 28.9 -0.6 50 39-88 60-113 (126)
18 3cip_G Gelsolin; actin, dictyo 46.9 3 0.0001 28.8 -0.7 30 39-68 63-92 (128)
19 2ff3_A Gelsolin; protein-prote 44.5 3.5 0.00012 29.6 -0.7 49 39-87 82-134 (150)
20 1t44_G Chimera of gelsolin dom 41.1 4.2 0.00015 28.7 -0.7 30 39-68 60-89 (147)
21 1z4e_A Transcriptional regulat 35.9 25 0.00087 21.4 2.4 28 45-78 101-128 (153)
22 2dxq_A AGR_C_4057P, acetyltran 34.8 33 0.0011 21.2 2.9 28 45-78 97-124 (150)
23 3qb8_A A654L protein; GNAT N-a 31.3 59 0.002 20.3 3.7 40 45-90 123-162 (197)
24 3tu5_B Gelsolin, protein cordo 30.1 8.3 0.00028 30.2 -0.7 31 39-69 78-108 (297)
25 2q0y_A GCN5-related N-acetyltr 29.9 51 0.0017 20.3 3.2 28 45-78 103-130 (153)
26 1tiq_A Protease synthase and s 25.4 56 0.0019 20.9 2.8 28 45-78 106-133 (180)
27 1i12_A Glucosamine-phosphate N 23.7 77 0.0026 19.7 3.2 30 45-80 111-140 (160)
28 2bei_A Diamine acetyltransfera 23.0 67 0.0023 20.3 2.8 29 45-79 104-132 (170)
29 1j72_A Macrophage capping prot 22.7 14 0.00048 28.2 -0.6 31 38-68 59-89 (347)
30 1u6m_A Acetyltransferase, GNAT 22.4 48 0.0016 21.5 2.1 29 45-79 128-156 (199)
31 3fg7_A Villin-1; actin binding 20.6 21 0.00072 28.5 0.0 31 38-68 105-135 (398)
32 4fd4_A Arylalkylamine N-acetyl 20.1 1.2E+02 0.0042 19.1 3.6 37 45-87 142-178 (217)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=98.00 E-value=5.6e-06 Score=54.72 Aligned_cols=43 Identities=19% Similarity=0.052 Sum_probs=40.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK 87 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn 87 (101)
+..|...+|+.|++.|+|.|.+.|.+++.++|||++|+..+++
T Consensus 42 ~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i~~ 84 (141)
T 3hst_B 42 GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSG 84 (141)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHTT
T ss_pred CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHHhC
Confidence 4568899999999999999999999999999999999999987
No 2
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=97.95 E-value=7.3e-06 Score=53.59 Aligned_cols=44 Identities=23% Similarity=0.102 Sum_probs=40.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCc----ceeeccchhHHHHHhhCC
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWT----MLWIECDSPLTVHLCNKR 88 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~----nLWLEsDS~LVvlAFkn~ 88 (101)
+..|...+|+.|++.|+|.|.+.|.+ ++.++|||++|+..+++.
T Consensus 41 ~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~i~~~ 88 (140)
T 3u3g_D 41 GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQMQGV 88 (140)
T ss_dssp EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHHHHHTTS
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHHHHhCCC
Confidence 45688899999999999999999999 999999999999999873
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=97.64 E-value=6.4e-05 Score=50.88 Aligned_cols=43 Identities=19% Similarity=0.107 Sum_probs=40.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhCC
Q 041278 46 ELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNKR 88 (101)
Q Consensus 46 ~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn~ 88 (101)
..|...+|+.|++.|+|.|.+.|.+++.++|||++|+...++.
T Consensus 45 ~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi~~i~~~ 87 (149)
T 2ehg_A 45 NSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQMNGE 87 (149)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHHHHHTTS
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHHHHHhCc
Confidence 5678899999999999999999999999999999999998764
No 4
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=97.51 E-value=0.0001 Score=50.69 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=39.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK 87 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn 87 (101)
|..|...+||.|++.|+|.|.+.+-+.+.+.|||++|+.++.+
T Consensus 46 ~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~~i~~ 88 (154)
T 2qkb_A 46 GRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITN 88 (154)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHhhhhh
Confidence 3568899999999999999999999999999999999999875
No 5
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=96.56 E-value=0.0016 Score=45.85 Aligned_cols=43 Identities=14% Similarity=0.027 Sum_probs=38.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhCC
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNKR 88 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn~ 88 (101)
+..|.-.+|+.|++.|+|.|.+.+. .+-+.|||++|+...++.
T Consensus 47 ~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~~~ 89 (142)
T 1zbf_A 47 PIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVKDK 89 (142)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHHcC
Confidence 4568889999999999999999998 999999999999976553
No 6
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=96.26 E-value=0.0015 Score=45.14 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=36.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK 87 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn 87 (101)
+..|...+||.|++.|+|.|.+. ..+.+.|||++|+.++++
T Consensus 40 ~~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 40 TRTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp EEECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHHHH
Confidence 34578899999999999999864 899999999999999876
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=96.17 E-value=0.0025 Score=44.32 Aligned_cols=40 Identities=20% Similarity=0.088 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278 46 ELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK 87 (101)
Q Consensus 46 ~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn 87 (101)
..|...+||.|++.|+|.+.+. ..+.+.|||++|+.++.+
T Consensus 43 ~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~i~~ 82 (158)
T 2e4l_A 43 LTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQGIMT 82 (158)
T ss_dssp EECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHHHHH
Confidence 4577899999999999998654 899999999999998876
No 8
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=96.05 E-value=0.0031 Score=42.56 Aligned_cols=40 Identities=23% Similarity=0.141 Sum_probs=35.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278 46 ELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK 87 (101)
Q Consensus 46 ~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn 87 (101)
..|.-.+||.|++.|+|.|.+ -..+.+.|||++|+.++++
T Consensus 41 ~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~ 80 (146)
T 3h08_A 41 ATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNE 80 (146)
T ss_dssp EECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHHH
Confidence 457778999999999999976 3789999999999999877
No 9
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=95.99 E-value=0.0058 Score=42.07 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHh
Q 041278 47 LTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLC 85 (101)
Q Consensus 47 anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAF 85 (101)
.|...+||.|++.|+|.|.+.|- .+.+.|||+.+..-.
T Consensus 48 ~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~~w~ 85 (147)
T 2kq2_A 48 MRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIAFWA 85 (147)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHHHHH
Confidence 47889999999999999999998 999999998777543
No 10
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=95.94 E-value=0.0027 Score=44.64 Aligned_cols=41 Identities=15% Similarity=-0.065 Sum_probs=36.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK 87 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn 87 (101)
+..|...+||.|++.|+|.+.+. ..+.+.|||++|+.++.+
T Consensus 44 ~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~ 84 (166)
T 1ril_A 44 ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTE 84 (166)
T ss_dssp EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhh
Confidence 34578899999999999998776 489999999999999877
No 11
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=95.48 E-value=0.01 Score=42.18 Aligned_cols=41 Identities=15% Similarity=0.015 Sum_probs=35.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhh
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCN 86 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFk 86 (101)
+..|.=.+|+.|++.|+|.+.+.+.+ +-+.|||++|+.-.+
T Consensus 41 ~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~ 81 (134)
T 4htu_A 41 PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVK 81 (134)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHH
Confidence 45677789999999999999998876 899999999998654
No 12
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=94.59 E-value=0.027 Score=40.26 Aligned_cols=42 Identities=21% Similarity=0.081 Sum_probs=35.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK 87 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn 87 (101)
+..+.+.||+.|...|+|.|.+.+ ..+-+-|||++|+.++..
T Consensus 52 nn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS~Yvi~~it~ 93 (165)
T 2lsn_A 52 GNHTAQMAEIAAVEFACKKALKIP-GPVLVITDSFYVAESANK 93 (165)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESCHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeChHHHHhhhhh
Confidence 445778899999999999888776 579999999999999864
No 13
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=93.39 E-value=0.05 Score=37.81 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=34.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK 87 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn 87 (101)
+..|.-.+||.|++.|+|.+ + ..+-+.|||++|+.+..+
T Consensus 45 ~~~Tnn~aEl~A~i~AL~~~---~-~~v~i~tDS~~v~~~i~~ 83 (150)
T 3qio_A 45 TDTTNQKTELQAIYLALQDS---G-LEVNIVTDSQYALGIITQ 83 (150)
T ss_dssp SSCCHHHHHHHHHHHHHHHS---C-SEEEEEESCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhC---C-CcEEEEeCcHHHHHHHHH
Confidence 45677899999999999985 3 889999999999999875
No 14
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=91.79 E-value=0.14 Score=36.43 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHh
Q 041278 46 ELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLC 85 (101)
Q Consensus 46 ~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAF 85 (101)
..|.-.+|+.|++.|+|.+ .-..+-+-|||++|+.++
T Consensus 60 ~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~i 96 (165)
T 3p1g_A 60 GTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATA 96 (165)
T ss_dssp TCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhh
Confidence 4477899999999999999 247899999999999987
No 15
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=88.91 E-value=0.27 Score=40.03 Aligned_cols=39 Identities=26% Similarity=0.185 Sum_probs=34.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK 87 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn 87 (101)
+.+|.-.+|+.|++.|+|.| =+.+-+-|||++|+.+.++
T Consensus 472 ~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~ 510 (557)
T 2zd1_A 472 TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQA 510 (557)
T ss_dssp CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhc
Confidence 34678899999999999999 3789999999999999976
No 16
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=86.68 E-value=0.47 Score=38.59 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278 46 ELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK 87 (101)
Q Consensus 46 ~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn 87 (101)
..|.-.+|+.|++.|+|. +-..+-+-|||++|+.+.++
T Consensus 470 ~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~ 507 (555)
T 1mu2_A 470 QTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVAS 507 (555)
T ss_dssp SCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhc
Confidence 457779999999999998 55899999999999999976
No 17
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=48.14 E-value=2.9 Score=28.88 Aligned_cols=50 Identities=10% Similarity=0.031 Sum_probs=36.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhCCc----ceeeccchhHHHHHhhCC
Q 041278 39 EIFFWIWELTAFATKLIAIILAIEHASIRDWT----MLWIECDSPLTVHLCNKR 88 (101)
Q Consensus 39 ~~f~~ig~anaL~aEL~gam~AiE~A~~~gW~----nLWLEsDS~LVvlAFkn~ 88 (101)
.||+|+|..++--.--.+++.|.|...+.|=. +.=---.|..-+..|+..
T Consensus 60 ~i~~W~G~~ss~de~g~Aa~~aveLd~~lgg~~vq~R~~QG~E~~~Fl~~F~~~ 113 (126)
T 2vik_A 60 NIHYWLGKNSSQDEQGAAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQG 113 (126)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHTTSCSCEEEEETTTSHHHHHHHCSSC
T ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCCccEEEEECCCCCHHHHHHcCCC
Confidence 57899999998888888999999999887642 122234566666677754
No 18
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=46.86 E-value=3 Score=28.81 Aligned_cols=30 Identities=10% Similarity=0.276 Sum_probs=26.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhC
Q 041278 39 EIFFWIWELTAFATKLIAIILAIEHASIRD 68 (101)
Q Consensus 39 ~~f~~ig~anaL~aEL~gam~AiE~A~~~g 68 (101)
.||+|+|..++--.--.++++|.|...+.|
T Consensus 63 ~i~~W~G~~ss~de~g~Aa~~aveLd~~lg 92 (128)
T 3cip_G 63 DLHYWLGNECSQDESGAAAIFTVQLDDYLN 92 (128)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCcchHHHHHHHHHHHHHHcC
Confidence 578999999998888889999999998876
No 19
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=44.48 E-value=3.5 Score=29.55 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=34.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhCCcc----eeeccchhHHHHHhhC
Q 041278 39 EIFFWIWELTAFATKLIAIILAIEHASIRDWTM----LWIECDSPLTVHLCNK 87 (101)
Q Consensus 39 ~~f~~ig~anaL~aEL~gam~AiE~A~~~gW~n----LWLEsDS~LVvlAFkn 87 (101)
.||+|+|..++--.--.+++.|.|...+.|=.- .=---.|..-+..|+.
T Consensus 82 ~IyfW~G~~ss~de~gaAA~~aveLd~~lgg~~vQ~Re~QG~Ep~~Fl~lFkg 134 (150)
T 2ff3_A 82 DLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKS 134 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCCEEEEEETTCCCHHHHHTCTT
T ss_pred EEEEEeCCCCCchhHHHHHHHHHHHHHHcCCCceEEEeECCCCCHHHHHHhcC
Confidence 578999999988888889999999998876321 1122234445555664
No 20
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=41.07 E-value=4.2 Score=28.74 Aligned_cols=30 Identities=10% Similarity=0.276 Sum_probs=26.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhC
Q 041278 39 EIFFWIWELTAFATKLIAIILAIEHASIRD 68 (101)
Q Consensus 39 ~~f~~ig~anaL~aEL~gam~AiE~A~~~g 68 (101)
.||+|+|..++--.--.++++|.|...+.|
T Consensus 60 ~i~~W~G~~ss~de~g~Aa~~aveLd~~lg 89 (147)
T 1t44_G 60 DLHYWLGNECSQDESGAAAIFTVQLDDYLN 89 (147)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCChhHHHHHHHHHHHHHHHcC
Confidence 578999999988888889999999998766
No 21
>1z4e_A Transcriptional regulator; nysgxrc target T2017, GNAT fold, structural genomics, PSI, P structure initiative; 2.00A {Bacillus halodurans} SCOP: d.108.1.1
Probab=35.85 E-value=25 Score=21.39 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=21.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccch
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDS 78 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS 78 (101)
|+++.|.. .+++.|.++|...++|++++
T Consensus 101 GiG~~Ll~------~~~~~a~~~g~~~i~l~v~~ 128 (153)
T 1z4e_A 101 GIGSQLVC------WAIERAKERGCHLIQLTTDK 128 (153)
T ss_dssp SHHHHHHH------HHHHHHHHTTEEEEEEEEET
T ss_pred CHHHHHHH------HHHHHHHHcCCCEEEEEEcc
Confidence 66666654 34567888999999999875
No 22
>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein struc initiative, midwest center for structural genomics, MCSG; 1.80A {Agrobacterium tumefaciens str}
Probab=34.75 E-value=33 Score=21.19 Aligned_cols=28 Identities=14% Similarity=-0.120 Sum_probs=21.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccch
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDS 78 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS 78 (101)
|+++.+.. .+++.|.++|...++|+++.
T Consensus 97 GiG~~Ll~------~~~~~a~~~g~~~i~l~v~~ 124 (150)
T 2dxq_A 97 GYGRTVVR------HAIETAFGANCYKVMLLTGR 124 (150)
T ss_dssp SHHHHHHH------HHHHHHHHTTCSEEEEEECC
T ss_pred CHHHHHHH------HHHHHHHHCCCCEEEEEeCC
Confidence 66666664 34678888999999999865
No 23
>3qb8_A A654L protein; GNAT N-acetyltransferase, acetyltransferase, COA, spermine, spermidine, transferase; HET: COA; 1.50A {Paramecium bursaria chlorella virus 1}
Probab=31.30 E-value=59 Score=20.25 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=29.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhCCCc
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNKRLL 90 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn~sl 90 (101)
|+++.+..+ +++.|.++|...+.+++|..-+...+++.-.
T Consensus 123 Gig~~Ll~~------~~~~a~~~g~~~i~l~~~n~~a~~~y~k~GF 162 (197)
T 3qb8_A 123 GLATKLLKK------TIEESSSHGFKYIYGDCTNIISQNMFEKHGF 162 (197)
T ss_dssp SHHHHHHHH------HHHHHHHTTCCEEEEEECSHHHHHHHHHTTC
T ss_pred CHHHHHHHH------HHHHHHHcCCCEEEEEcCCHHHHHHHHHCCC
Confidence 566666543 5677888999999999988877777665433
No 24
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=30.13 E-value=8.3 Score=30.18 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=26.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhCC
Q 041278 39 EIFFWIWELTAFATKLIAIILAIEHASIRDW 69 (101)
Q Consensus 39 ~~f~~ig~anaL~aEL~gam~AiE~A~~~gW 69 (101)
.||||+|..++--.--.+++.|.|.....|=
T Consensus 78 ~i~~W~G~~ss~de~g~aa~~av~Ld~~lgg 108 (297)
T 3tu5_B 78 DLHYWLGNECSQDESGAAAIFTVQLDDYLNG 108 (297)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEEeCCCCChhHHHHHHHHHHHHHHHcCC
Confidence 5789999999998889999999999877553
No 25
>2q0y_A GCN5-related N-acetyltransferase; YP_295895.1, acetyltransferase (GNAT) family, structural genomics, joint center for ST genomics; HET: MSE; 1.80A {Ralstonia eutropha JMP134}
Probab=29.88 E-value=51 Score=20.30 Aligned_cols=28 Identities=11% Similarity=-0.029 Sum_probs=21.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccch
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDS 78 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS 78 (101)
|++++|..+ +++.|.++|...++|+++.
T Consensus 103 GiG~~Ll~~------~~~~a~~~g~~~i~L~~~~ 130 (153)
T 2q0y_A 103 GIGQALMNR------AEAEFAERGIAFAVLHATE 130 (153)
T ss_dssp SHHHHHHHH------HHHHHHHTTCCCEEECCCT
T ss_pred CHHHHHHHH------HHHHHHHCCCCEEEEEeCH
Confidence 666777654 4678889999999999864
No 26
>1tiq_A Protease synthase and sporulation negative regulatory protein PAI 1; alpha-beta protein, structural genomics, PSI; HET: COA; 1.90A {Bacillus subtilis} SCOP: d.108.1.1
Probab=25.40 E-value=56 Score=20.85 Aligned_cols=28 Identities=21% Similarity=0.098 Sum_probs=20.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccch
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDS 78 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS 78 (101)
|+++.|.. .+++.|.+.|...++|++.+
T Consensus 106 GiG~~Ll~------~~~~~a~~~g~~~i~L~v~~ 133 (180)
T 1tiq_A 106 GLGKHLLN------KAIEIALERNKKNIWLGVWE 133 (180)
T ss_dssp SHHHHHHH------HHHHHHHHTTCSEEEEEEET
T ss_pred CHHHHHHH------HHHHHHHHCCCCEEEEEehh
Confidence 66666654 34667888999999999844
No 27
>1i12_A Glucosamine-phosphate N-acetyltransferase; GNAT, alpha/beta; HET: ACO; 1.30A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 1i1d_A* 1i21_A
Probab=23.73 E-value=77 Score=19.75 Aligned_cols=30 Identities=7% Similarity=-0.029 Sum_probs=22.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhH
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPL 80 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~L 80 (101)
|+++.+..+ +++.|.+.|...++|+++..-
T Consensus 111 Gig~~ll~~------~~~~a~~~g~~~i~l~~~~~n 140 (160)
T 1i12_A 111 GLGKLLIDQ------LVTIGFDYGCYKIILDCDEKN 140 (160)
T ss_dssp SHHHHHHHH------HHHHHHHTTCSEEEEEECGGG
T ss_pred CHHHHHHHH------HHHHHHHcCCcEEEEEcChhh
Confidence 566665543 467888899999999998765
No 28
>2bei_A Diamine acetyltransferase 2; SSAT2, BC011751, AAH11751, thialysine N-acetyltransferase, structural genomics, protein structure initiative, PSI; HET: ACO; 1.84A {Homo sapiens} SCOP: d.108.1.1 PDB: 2q4v_A*
Probab=22.97 E-value=67 Score=20.34 Aligned_cols=29 Identities=10% Similarity=-0.136 Sum_probs=21.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchh
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSP 79 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~ 79 (101)
|+++.|..+ +++.|.++|...++|++.+.
T Consensus 104 GiG~~Ll~~------~~~~a~~~g~~~i~L~v~~~ 132 (170)
T 2bei_A 104 GIGSKIIKK------VAEVALDKGCSQFRLAVLDW 132 (170)
T ss_dssp SHHHHHHHH------HHHHHHHTTCCEEEEEEETT
T ss_pred CHHHHHHHH------HHHHHHHCCCCEEEEEEecc
Confidence 666666653 46788899999999997653
No 29
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=22.66 E-value=14 Score=28.21 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhC
Q 041278 38 KEIFFWIWELTAFATKLIAIILAIEHASIRD 68 (101)
Q Consensus 38 ~~~f~~ig~anaL~aEL~gam~AiE~A~~~g 68 (101)
-.||+|+|..++--.--.+++.+.|.....|
T Consensus 59 ~~i~~W~G~~ss~de~~~aa~~t~~ld~~lg 89 (347)
T 1j72_A 59 SHLHLWIGQQSSRDEQGACAVLAVQLDDYLG 89 (347)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 3578999999888877788899999988765
No 30
>1u6m_A Acetyltransferase, GNAT family; structural genomics, PSI, protein structure initiative; 2.40A {Enterococcus faecalis} SCOP: d.108.1.1
Probab=22.38 E-value=48 Score=21.48 Aligned_cols=29 Identities=14% Similarity=-0.106 Sum_probs=22.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchh
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSP 79 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~ 79 (101)
|++++|..+ +++.|.++|...++|++++.
T Consensus 128 GiG~~Ll~~------~~~~a~~~g~~~i~L~v~~~ 156 (199)
T 1u6m_A 128 GIGSKLLDA------LPEVAKASGKQALGLNVDFD 156 (199)
T ss_dssp SHHHHHHHT------HHHHHHTTTCSEEEEEEETT
T ss_pred CHHHHHHHH------HHHHHHHcCCCEEEEEEecC
Confidence 777777764 46778899999999988654
No 31
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=20.57 E-value=21 Score=28.49 Aligned_cols=31 Identities=6% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhC
Q 041278 38 KEIFFWIWELTAFATKLIAIILAIEHASIRD 68 (101)
Q Consensus 38 ~~~f~~ig~anaL~aEL~gam~AiE~A~~~g 68 (101)
-.||+|+|..++--.--.+++.+.|.....|
T Consensus 105 ~~i~~W~G~~ss~de~g~aa~~av~Ld~~lg 135 (398)
T 3fg7_A 105 YLLYVWQGSQASQDEITASAYQAVILDQKYN 135 (398)
T ss_dssp -------------------------------
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4689999998887766677888888876544
No 32
>4fd4_A Arylalkylamine N-acetyltransferase like 5B; GNAT; 1.95A {Aedes aegypti}
Probab=20.13 E-value=1.2e+02 Score=19.10 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=27.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCCcceeeccchhHHHHHhhC
Q 041278 45 WELTAFATKLIAIILAIEHASIRDWTMLWIECDSPLTVHLCNK 87 (101)
Q Consensus 45 g~anaL~aEL~gam~AiE~A~~~gW~nLWLEsDS~LVvlAFkn 87 (101)
|+++.|..+ +++.|.+.|...+.+++++.-+...+++
T Consensus 142 Gig~~Ll~~------~~~~a~~~g~~~i~~~~~n~~a~~~Y~k 178 (217)
T 4fd4_A 142 SLGQRLLQF------QMDLSKKLGFKAISGDFTSVFSVKLAEK 178 (217)
T ss_dssp CHHHHHHHH------HHHHHHHHTCSEEEEEECSHHHHHHHHH
T ss_pred CHHHHHHHH------HHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 677777654 4567888999999999887666555544
Done!