BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041280
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CA4|A Chain A, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|B Chain B, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|C Chain C, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|D Chain D, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|E Chain E, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|F Chain F, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1D00|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|G Chain G, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|H Chain H, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D0J|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
Length = 168
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 24/151 (15%)
Query: 12 YVWKIENFSK---------LEAKFYESEVFVAGDQKWK--IRLYPKGQGQRTGSHLSM-F 59
++WKI +F++ + A F S F +K +R+Y G G G+HLS+ F
Sbjct: 21 FIWKISDFARKRQEAVAGRIPAIF--SPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFF 78
Query: 60 LALADSSTVTRDFKICVRYTLRIRDQLQSKH------NDKIARTWIRPSIG---ARGWLQ 110
+ + + + + TL + DQ +H D + ++ RP A G
Sbjct: 79 VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 138
Query: 111 FVELSYLNKASNGLLVHDVCIVEAEVSVLGI 141
F +S + +A N + D ++A V + G+
Sbjct: 139 FCPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 168
>pdb|1CZY|A Chain A, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1CZY|B Chain B, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1CZY|C Chain C, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1D0A|A Chain A, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|B Chain B, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|C Chain C, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|D Chain D, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|E Chain E, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|F Chain F, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D01|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
Length = 168
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 12 YVWKIENFSK---------LEAKFYESEVFVAGDQKWK--IRLYPKGQGQRTGSHLSM-F 59
++WKI +F + + A F S F +K +R+Y G G G+HLS+ F
Sbjct: 21 FIWKISDFPRKRQEAVAGRIPAIF--SPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFF 78
Query: 60 LALADSSTVTRDFKICVRYTLRIRDQLQSKH------NDKIARTWIRPSIG---ARGWLQ 110
+ + + + + TL + DQ +H D + ++ RP A G
Sbjct: 79 VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 138
Query: 111 FVELSYLNKASNGLLVHDVCIVEAEVSVLGI 141
F +S + +A N + D ++A V + G+
Sbjct: 139 FCPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 168
>pdb|1CA9|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
Length = 192
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 24/151 (15%)
Query: 12 YVWKIENFSK---------LEAKFYESEVFVAGDQKWK--IRLYPKGQGQRTGSHLSM-F 59
++WKI +F++ + A F S F +K +R+Y G G G+HLS+ F
Sbjct: 45 FIWKISDFARKRQEAVAGRIPAIF--SPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFF 102
Query: 60 LALADSSTVTRDFKICVRYTLRIRDQLQSKH------NDKIARTWIRPSIG---ARGWLQ 110
+ + + + + TL + DQ +H D + ++ RP A G
Sbjct: 103 VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 162
Query: 111 FVELSYLNKASNGLLVHDVCIVEAEVSVLGI 141
F +S + +A N + D ++A V + G+
Sbjct: 163 FCPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 192
>pdb|1CZZ|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
pdb|1CZZ|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
pdb|1CZZ|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
Length = 187
Score = 32.3 bits (72), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 12 YVWKIENFSK---------LEAKFYESEVFVAGDQKWK--IRLYPKGQGQRTGSHLSM-F 59
++WKI +F + + A F S F +K +R+Y G G G+HLS+ F
Sbjct: 40 FIWKISDFPRKRQEAVAGRIPAIF--SPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFF 97
Query: 60 LALADSSTVTRDFKICVRYTLRIRDQLQSKH------NDKIARTWIRPSIG---ARGWLQ 110
+ + + + + TL + DQ +H D + ++ RP A G
Sbjct: 98 VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 157
Query: 111 FVELSYLNKASNGLLVHDVCIVEAEVSVLGI 141
F +S + +A N + D ++A V + G+
Sbjct: 158 FCPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 187
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 12 YVWKIENFSKLEAKFYE---SEVFVAGDQ---KWKIRLYPKG--QGQRTGSHLSMFLALA 63
Y+W I NFS + E S F +G KW +R+ PKG + + L + L
Sbjct: 13 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC 72
Query: 64 DSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNG 123
S V FK + L + + + A +++ G+ +F+ +L +NG
Sbjct: 73 PKSEVRAKFKFSI---LNAKGEETKAMESQRAYRFVQGK--DWGFKKFIRRGFLLDEANG 127
Query: 124 LLVHDVCIVEAEVSVL 139
LL D + EVSV+
Sbjct: 128 LLPDDKLTLFCEVSVV 143
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 12 YVWKIENFSKLEAKFYE---SEVFVAGDQ---KWKIRLYPKG--QGQRTGSHLSMFLALA 63
Y+W I NFS + E S F +G KW +R+ PKG + + L + L
Sbjct: 14 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC 73
Query: 64 DSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNG 123
S V FK + L + + + A +++ G+ +F+ +L +NG
Sbjct: 74 PKSEVRAKFKFSI---LNAKGEETKAMESQRAYRFVQGK--DWGFKKFIRRDFLLDEANG 128
Query: 124 LLVHDVCIVEAEVSVL 139
LL D + EVSV+
Sbjct: 129 LLPDDKLTLFCEVSVV 144
>pdb|1QSC|A Chain A, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
pdb|1QSC|B Chain B, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
pdb|1QSC|C Chain C, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
Length = 191
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 26/152 (17%)
Query: 12 YVWKIENFSK---------LEAKFYESEVFVAGDQKWK--IRLYPKGQGQRTGSHLSMFL 60
++WKI +F++ + A F S F +K +R+Y G G G+HLS+F
Sbjct: 44 FIWKISDFARKRQEAVAGRIPAIF--SPAFYTSRYGYKXCLRIYLNGDGTGRGTHLSLFF 101
Query: 61 AL--ADSSTVTRDFKICVRYTLRIRDQLQSKH------NDKIARTWIRPSIG---ARGWL 109
+ + + R + + TL + DQ +H D + ++ RP A G
Sbjct: 102 VVXKGPNDALLR-WPFNQKVTLXLLDQNNREHVIDAFRPDVTSSSFQRPVNDXNIASGCP 160
Query: 110 QFVELSYLNKASNGLLVHDVCIVEAEVSVLGI 141
F +S +A N + D ++A V + G+
Sbjct: 161 LFCPVSKX-EAKNSYVRDDAIFIKAIVDLTGL 191
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 12 YVWKIENFSKLEAKFYE---SEVFVAGDQ---KWKIRLYPKG--QGQRTGSHLSMFLALA 63
Y+W I NFS + E S F +G KW +R+ PKG + + L + L
Sbjct: 13 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC 72
Query: 64 DSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNG 123
S V FK + L + + + A +++ G+ +F+ +L +NG
Sbjct: 73 PKSEVRAKFKFSI---LNAKGEETKAMESQRAYRFVQGK--DWGFKKFIRRDFLLDEANG 127
Query: 124 LLVHDVCIVEAEVSVL 139
LL D + EVSV+
Sbjct: 128 LLPDDKLTLFCEVSVV 143
>pdb|1F3V|B Chain B, Crystal Structure Of The Complex Between The N-Terminal
Domain Of Tradd And The Traf Domain Of Traf2
Length = 171
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 26/152 (17%)
Query: 12 YVWKIENFSK---------LEAKFYESEVFVAGDQKWK--IRLYPKGQGQRTGSHLSMFL 60
++WKI +F + + A F S F +K +R+Y G G G+HLS+F
Sbjct: 24 FIWKISDFPRKRQEAVAGRIPAIF--SPAFYTSRYGYKXCLRIYLNGDGTGRGTHLSLFF 81
Query: 61 AL--ADSSTVTRDFKICVRYTLRIRDQLQSKH------NDKIARTWIRPSIG---ARGWL 109
+ + + R + + TL + DQ +H D + ++ RP A G
Sbjct: 82 VVXKGPNDALLR-WPFNQKVTLXLLDQNNREHVIDAFRPDVTSSSFQRPVNDXNIASGCP 140
Query: 110 QFVELSYLNKASNGLLVHDVCIVEAEVSVLGI 141
F +S +A N + D ++A V + G+
Sbjct: 141 LFCPVSKX-EAKNSYVRDDAIFIKAIVDLTGL 171
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 25/142 (17%)
Query: 12 YVWKIENFSKLEAKFYE---SEVFVAGDQ---KWKIRLYPKGQGQRTGSHLSMFLALADS 65
Y+W I NFS + E S F +G KW +R+ PKG + + D
Sbjct: 9 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES----------KDY 58
Query: 66 STVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGAR--------GWLQFVELSYL 117
++ C + +R + + S N K T S A G+ +F+ +L
Sbjct: 59 LSLYLLLVSCPKSEVRAKFKF-SILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFL 117
Query: 118 NKASNGLLVHDVCIVEAEVSVL 139
+NGLL D + EVSV+
Sbjct: 118 LDEANGLLPDDKLTLFCEVSVV 139
>pdb|4GHU|A Chain A, Crystal Structure Of Traf3CARDIF
Length = 198
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 13 VWKIENFS--KLEAKFYE-----SEVFVAGDQKWKI--RLYPKGQGQRTGSHLSMFLAL 62
+WKI ++ K EA + S+ F G +K+ R+Y G G G+HLS+F +
Sbjct: 43 IWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVI 101
>pdb|1KZZ|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1L0A|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1ZMS|A Chain A, Lmp1 Protein Binds To Traf3 As A Structural Cd40
pdb|2GKW|A Chain A, Key Contacts Promote Recongnito Of Baff-R By Traf3
Length = 192
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 13 VWKIENFS--KLEAKFYE-----SEVFVAGDQKWKI--RLYPKGQGQRTGSHLSMFLAL 62
+WKI ++ K EA + S+ F G +K+ R+Y G G G+HLS+F +
Sbjct: 43 IWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVI 101
>pdb|1RF3|A Chain A, Structurally Distinct Recognition Motifs In Lymphotoxin-B
Receptor And Cd40 For Traf-Mediated Signaling
Length = 200
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 13 VWKIENFS--KLEAKFYE-----SEVFVAGDQKWKI--RLYPKGQGQRTGSHLSMFLAL 62
+WKI ++ K EA + S+ F G +K+ R+Y G G G+HLS+F +
Sbjct: 43 IWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVI 101
>pdb|1FLK|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLK|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
Length = 228
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 13 VWKIENFS--KLEAKFYE-----SEVFVAGDQKWKI--RLYPKGQGQRTGSHLSMFLAL 62
+WKI ++ K EA + S+ F G +K+ R+Y G G G+HLS+F +
Sbjct: 79 IWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVI 137
>pdb|3D2O|A Chain A, Crystal Structure Of Manganese-Metallated Gtp
Cyclohydrolase Type Ib
pdb|3D2O|B Chain B, Crystal Structure Of Manganese-Metallated Gtp
Cyclohydrolase Type Ib
Length = 257
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 49 GQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIA------RTWIRPS 102
++ G+H+S F+AL + T DF R T + L S+ KI+ R P
Sbjct: 53 AEQKGTHMSRFVALMEQHTEVLDFAQLHRLTAEMVALLDSRAG-KISVSFPFFRKKTAPV 111
Query: 103 IGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISKAL 145
G R L + ++S + +G H + ++ S+ SK +
Sbjct: 112 SGIRSLLDY-DVSLTGEMKDGAYGHSMKVMIPVTSLCPCSKEI 153
>pdb|4GJH|A Chain A, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|B Chain B, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|C Chain C, Crystal Structure Of The Traf Domain Of Traf5
Length = 178
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 42 RLYPKGQGQRTGSHLSM-FLALADSSTVTRDFKICVRYTLRIRDQLQSKHN-------DK 93
R Y G G G+HLS+ F+ + + R TL + DQ K++ D
Sbjct: 65 RAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADP 124
Query: 94 IARTWIRPSIG---ARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSV 138
+ ++ RP A G +FV S L + N + D ++ V +
Sbjct: 125 NSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL 172
>pdb|3LQM|A Chain A, Structure Of The Il-10r2 Common Chain
pdb|3LQM|B Chain B, Structure Of The Il-10r2 Common Chain
Length = 201
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 38 KWKIRLYPKGQGQRTGSHLS--MFLALADSSTVTR-DFKICVRY---TLRIRDQLQSKHN 91
+W+ + KGQ T +LS +F +T+T DF +Y TLR+R + +H+
Sbjct: 20 QWESPAFAKGQLTFTAQYLSYRIFQDKCMQTTLTECDFSSLSKYGDHTLRVRAEFADEHS 79
Query: 92 DKIART 97
D + T
Sbjct: 80 DWVQIT 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,022,652
Number of Sequences: 62578
Number of extensions: 139317
Number of successful extensions: 349
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 19
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)