Query 041280
Match_columns 145
No_of_seqs 109 out of 1057
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:35:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03772 MATH_HAUSP Herpesvirus 100.0 6E-32 1.3E-36 182.7 16.7 130 9-140 2-134 (137)
2 cd03775 MATH_Ubp21p Ubiquitin- 100.0 9.3E-32 2E-36 181.1 14.6 124 11-137 2-134 (134)
3 cd03774 MATH_SPOP Speckle-type 100.0 1.6E-31 3.6E-36 180.9 13.9 130 7-141 2-139 (139)
4 cd03773 MATH_TRIM37 Tripartite 100.0 7.1E-30 1.5E-34 171.4 12.6 124 7-137 2-130 (132)
5 cd00270 MATH_TRAF_C Tumor Necr 100.0 6E-29 1.3E-33 170.1 12.2 126 10-137 1-149 (149)
6 cd03780 MATH_TRAF5 Tumor Necro 100.0 1.1E-28 2.4E-33 168.2 13.2 128 10-137 1-148 (148)
7 cd03779 MATH_TRAF1 Tumor Necro 100.0 1.9E-28 4.1E-33 166.5 13.6 128 10-137 1-147 (147)
8 cd03781 MATH_TRAF4 Tumor Necro 100.0 4.5E-28 9.8E-33 166.7 13.3 126 10-137 1-154 (154)
9 cd03776 MATH_TRAF6 Tumor Necro 100.0 1.7E-28 3.7E-33 167.6 10.9 126 10-137 1-147 (147)
10 cd03777 MATH_TRAF3 Tumor Necro 100.0 1.2E-27 2.6E-32 168.4 14.6 130 7-138 36-185 (186)
11 cd00121 MATH MATH (meprin and 100.0 8.7E-27 1.9E-31 153.5 15.5 125 10-137 1-126 (126)
12 cd03778 MATH_TRAF2 Tumor Necro 99.9 1.5E-26 3.3E-31 159.0 13.5 130 6-136 15-163 (164)
13 cd03771 MATH_Meprin Meprin fam 99.9 1.5E-26 3.3E-31 159.9 13.1 126 9-137 1-167 (167)
14 PF00917 MATH: MATH domain; I 99.9 1.7E-25 3.7E-30 146.8 9.2 116 16-138 1-119 (119)
15 cd03782 MATH_Meprin_Beta Mepri 99.9 1.7E-21 3.8E-26 133.1 10.3 126 9-137 1-167 (167)
16 smart00061 MATH meprin and TRA 99.9 1.3E-20 2.7E-25 118.8 11.1 93 12-112 2-95 (95)
17 cd03783 MATH_Meprin_Alpha Mepr 99.9 7E-21 1.5E-25 130.7 10.5 127 9-137 1-167 (167)
18 COG5077 Ubiquitin carboxyl-ter 99.7 2.5E-17 5.5E-22 133.1 6.8 132 6-141 35-173 (1089)
19 KOG1987 Speckle-type POZ prote 98.9 2.5E-08 5.3E-13 75.2 11.7 120 12-142 6-129 (297)
20 KOG1863 Ubiquitin carboxyl-ter 98.7 3.7E-08 8E-13 85.5 5.6 128 12-144 29-157 (1093)
21 KOG0297 TNF receptor-associate 97.7 3.1E-05 6.8E-10 60.8 3.0 80 6-85 276-365 (391)
22 PF08922 DUF1905: Domain of un 30.6 81 0.0017 18.9 3.0 16 33-48 38-53 (80)
23 PF06565 DUF1126: Repeat of un 29.2 29 0.00062 17.3 0.7 10 124-133 5-14 (33)
24 PF12197 lci: Bacillus cereus 26.9 1.1E+02 0.0025 16.4 4.2 32 26-59 10-41 (45)
25 PF08151 FerI: FerI (NUC094) d 25.8 1.5E+02 0.0033 17.5 3.9 32 34-65 13-44 (72)
26 KOG2488 Acetyltransferase (GNA 25.1 26 0.00057 25.1 0.2 24 103-126 73-96 (202)
27 cd02181 GH16_fungal_Lam16A_glu 22.6 1.1E+02 0.0023 23.5 3.0 38 100-137 21-58 (293)
No 1
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=100.00 E-value=6e-32 Score=182.65 Aligned_cols=130 Identities=17% Similarity=0.261 Sum_probs=110.1
Q ss_pred CCEEEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCC--CCCCeEEEEEEecCCCCCCCCceEEEEEEEEEEcCC
Q 041280 9 ICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQ--RTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQL 86 (145)
Q Consensus 9 ~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~--~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n~~ 86 (145)
.++++|+|+|||.+ ++.++|+.|.+||++|+|++||+|... +..+|||+||.|.... ....|++.|+|+|+|+|+.
T Consensus 2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~ 79 (137)
T cd03772 2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYK 79 (137)
T ss_pred CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCC
Confidence 57899999999998 788999999999999999999999654 2358999999998643 3348999999999999998
Q ss_pred CCc-ccceecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEe
Q 041280 87 QSK-HNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLG 140 (145)
Q Consensus 87 ~~~-~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~ 140 (145)
++. ...+...+.|.....+|||++||+|++|.++.+|||+||+|+|+|+|+|--
T Consensus 80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 543 333344467876678999999999999987778999999999999998854
No 2
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=100.00 E-value=9.3e-32 Score=181.11 Aligned_cols=124 Identities=23% Similarity=0.479 Sum_probs=106.1
Q ss_pred EEEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC----CCCCceEEEEEEEEEEcCC
Q 041280 11 KYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSST----VTRDFKICVRYTLRIRDQL 86 (145)
Q Consensus 11 ~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~----~~~~~~~~~~f~~~l~n~~ 86 (145)
+++|+|+|||.+ ++.+.|+.|.+||++|+|.+||+|... .+|+|+||++.+.+. .+++|+++|+|+|+|+||.
T Consensus 2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~ 78 (134)
T cd03775 2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG 78 (134)
T ss_pred cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence 589999999996 678999999999999999999999765 589999999976543 2578999999999999997
Q ss_pred CCc-ccceecceeecCccccccccceeeccccccC----CCCeeeCCEEEEEEEEE
Q 041280 87 QSK-HNDKIARTWIRPSIGARGWLQFVELSYLNKA----SNGLLVHDVCIVEAEVS 137 (145)
Q Consensus 87 ~~~-~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~----~~~fl~dd~l~i~~~i~ 137 (145)
++. +......+.|+....+|||.+||++++|++| ++|||+||+|+|+|.|+
T Consensus 79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 654 2334456789877789999999999999965 57999999999999874
No 3
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.98 E-value=1.6e-31 Score=180.91 Aligned_cols=130 Identities=25% Similarity=0.411 Sum_probs=109.4
Q ss_pred CCCCEEEEEEccccccc---CceEecCcEEEcc---eEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEEE
Q 041280 7 ASICKYVWKIENFSKLE---AKFYESEVFVAGD---QKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTL 80 (145)
Q Consensus 7 ~~~~~~~w~I~nfs~~~---~~~~~S~~f~~~g---~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~ 80 (145)
+...+|+|+|+|||.+. ++.+.|+.|.+|| ++|+|++||+|..++..+|+|+||++.+.+ .++++|+|+|
T Consensus 2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~ 77 (139)
T cd03774 2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKF 77 (139)
T ss_pred ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEE
Confidence 45679999999999874 6789999999998 499999999998766678999999997642 3679999999
Q ss_pred EEEcCCCCccc--ceecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEee
Q 041280 81 RIRDQLQSKHN--DKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGI 141 (145)
Q Consensus 81 ~l~n~~~~~~~--~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~ 141 (145)
.|+|+++++.. .....+.|+ ...+|||.+||++++|+++.+|||+||+|+|+|+|+|+++
T Consensus 78 ~l~n~~~~~~~~~~~~~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~~ 139 (139)
T cd03774 78 SILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 139 (139)
T ss_pred EEEecCCCeeeeecccCcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEcC
Confidence 99999977532 222346676 4678999999999999877789999999999999999863
No 4
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.97 E-value=7.1e-30 Score=171.36 Aligned_cols=124 Identities=24% Similarity=0.371 Sum_probs=104.0
Q ss_pred CCCCEEEEEEccccccc--CceEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEEEEEEc
Q 041280 7 ASICKYVWKIENFSKLE--AKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRD 84 (145)
Q Consensus 7 ~~~~~~~w~I~nfs~~~--~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n 84 (145)
++..+++|+|+|||.++ ++.++|+.|.+||++|+|.+||+|..++..+|||+||.+.+. ..+.+.++|+|+|+|
T Consensus 2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~~l~lln 77 (132)
T cd03773 2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEYRVEMVH 77 (132)
T ss_pred CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEEEEEEEc
Confidence 45678999999999985 678999999999999999999999887667899999999764 246788899999999
Q ss_pred CCCC-cccceecceeecCccccccccceeeccccccCCCCeeeC--CEEEEEEEEE
Q 041280 85 QLQS-KHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVH--DVCIVEAEVS 137 (145)
Q Consensus 85 ~~~~-~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~d--d~l~i~~~i~ 137 (145)
|.++ ++......+.|.. +.+|||.+||++++|++ +|||+| |+|+|+|.|+
T Consensus 78 q~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 78 QANPTKNIKREFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCCCccceEEeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 9533 3444444567764 57899999999999986 699999 9999999986
No 5
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.96 E-value=6e-29 Score=170.07 Aligned_cols=126 Identities=25% Similarity=0.411 Sum_probs=102.8
Q ss_pred CEEEEEEccccccc-------CceEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCceEEEEEE
Q 041280 10 CKYVWKIENFSKLE-------AKFYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFKICVRYT 79 (145)
Q Consensus 10 ~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~~~~~f~ 79 (145)
++|+|+|+|||.++ ++.++|+.|.+| |++|+|++||+|..++.++|||+||++.+.+. ...+|+++++|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 57999999999984 358999999999 99999999999987666789999999987643 246799999999
Q ss_pred EEEEcCCCC---ccccee-----cceeec-----CccccccccceeeccccccCCCCeeeCCEEEEEEEEE
Q 041280 80 LRIRDQLQS---KHNDKI-----ARTWIR-----PSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVS 137 (145)
Q Consensus 80 ~~l~n~~~~---~~~~~~-----~~~~F~-----~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~ 137 (145)
|+|+||.++ ++.... ..+.|. ..+.+|||.+||++++|++ .|||+||+|+|+|+|.
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence 999999874 222111 123453 1457899999999999987 4899999999999984
No 6
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.96 E-value=1.1e-28 Score=168.16 Aligned_cols=128 Identities=24% Similarity=0.333 Sum_probs=105.2
Q ss_pred CEEEEEEccccccc-----Cc--eEecCcE--EEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCceEEEEEE
Q 041280 10 CKYVWKIENFSKLE-----AK--FYESEVF--VAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTV-TRDFKICVRYT 79 (145)
Q Consensus 10 ~~~~w~I~nfs~~~-----~~--~~~S~~f--~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~-~~~~~~~~~f~ 79 (145)
+.+.|+|+|||.++ |. .++|++| ..+||+|+|++||||.+.+.++|||+||.+++.+.+ -..|+++++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 57899999999985 44 7999999 899999999999999987778899999999976422 35799999999
Q ss_pred EEEEcCCCCc-cc--c-e--ecceeecCc----cccccccceeeccccccCCCCeeeCCEEEEEEEEE
Q 041280 80 LRIRDQLQSK-HN--D-K--IARTWIRPS----IGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVS 137 (145)
Q Consensus 80 ~~l~n~~~~~-~~--~-~--~~~~~F~~~----~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~ 137 (145)
|.|++|.+.+ ++ . . ...+.|... +.+||+++||++++|++++.+||+||++.|+|.|.
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence 9999998543 21 1 1 113557643 56899999999999987446999999999999873
No 7
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.96 E-value=1.9e-28 Score=166.50 Aligned_cols=128 Identities=21% Similarity=0.287 Sum_probs=103.0
Q ss_pred CEEEEEEccccccc-----C--ceEecCcEEE--cceEEEEEEEeCCCCCCCCCeEEEEEEecCCC-CCCCCceEEEEEE
Q 041280 10 CKYVWKIENFSKLE-----A--KFYESEVFVA--GDQKWKIRLYPKGQGQRTGSHLSMFLALADSS-TVTRDFKICVRYT 79 (145)
Q Consensus 10 ~~~~w~I~nfs~~~-----~--~~~~S~~f~~--~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~-~~~~~~~~~~~f~ 79 (145)
+.+.|+|+||+++. + ..++||+|.. .||+|+|++||||.+.+.++|+|+||.+.+.+ +.-..|+++++++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 57899999999864 2 3699999964 49999999999999877788999999999753 2234799999999
Q ss_pred EEEEcCCCCcccc--eec---ceeec----CccccccccceeeccccccCCCCeeeCCEEEEEEEEE
Q 041280 80 LRIRDQLQSKHND--KIA---RTWIR----PSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVS 137 (145)
Q Consensus 80 ~~l~n~~~~~~~~--~~~---~~~F~----~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~ 137 (145)
|.|++|.+.+... ... .+.|. ..+.+||+++||++++|++...+||+||+++|+|+|.
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 9999998654321 111 25586 3456899999999999987335999999999999983
No 8
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.96 E-value=4.5e-28 Score=166.68 Aligned_cols=126 Identities=21% Similarity=0.322 Sum_probs=102.5
Q ss_pred CEEEEEEccccccc-------CceEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCceEEEEEE
Q 041280 10 CKYVWKIENFSKLE-------AKFYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVT-RDFKICVRYT 79 (145)
Q Consensus 10 ~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~-~~~~~~~~f~ 79 (145)
+.|.|+|+|||.++ ++.+.|+.|.+| ||+|+|++||||..++..+|||+||++.+.+..+ ..|+++++|+
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 57899999999875 257999999999 9999999999998877778999999999864332 4899999999
Q ss_pred EEEEcCCCC--c---ccce-----ecceeecC--------ccccccccceeeccccccCCCCeeeCCEEEEEEEEE
Q 041280 80 LRIRDQLQS--K---HNDK-----IARTWIRP--------SIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVS 137 (145)
Q Consensus 80 ~~l~n~~~~--~---~~~~-----~~~~~F~~--------~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~ 137 (145)
|+|++|.++ . ++.. .....|+. .+.+||+..||++++|+. .+||+||+|+|+|+|.
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence 999999864 1 1111 11233542 346799999999999997 6899999999999983
No 9
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.96 E-value=1.7e-28 Score=167.59 Aligned_cols=126 Identities=25% Similarity=0.337 Sum_probs=101.4
Q ss_pred CEEEEEEccccccc-----Cc--eEecCcEEE--cceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCceEEEEEE
Q 041280 10 CKYVWKIENFSKLE-----AK--FYESEVFVA--GDQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFKICVRYT 79 (145)
Q Consensus 10 ~~~~w~I~nfs~~~-----~~--~~~S~~f~~--~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~~~~~f~ 79 (145)
++|.|+|+|||.++ ++ .++|+.|.+ +||+|+|++||+|..++..+|||+||++.+.+. ...+|+++++|+
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 57999999999764 34 488999985 799999999999988776789999999987543 345799999999
Q ss_pred EEEEcCCCCc-ccc-----eecceeecC-----ccccccccceeeccccccCCCCeeeCCEEEEEEEEE
Q 041280 80 LRIRDQLQSK-HND-----KIARTWIRP-----SIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVS 137 (145)
Q Consensus 80 ~~l~n~~~~~-~~~-----~~~~~~F~~-----~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~ 137 (145)
|.|++|.++. ++. ......|.. .+.+|||.+||++++|++ .+||+||+|+|+|+|.
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence 9999998643 221 111234652 346899999999999987 5899999999999984
No 10
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.96 E-value=1.2e-27 Score=168.42 Aligned_cols=130 Identities=24% Similarity=0.358 Sum_probs=106.1
Q ss_pred CCCCEEEEEEccccccc-----Cc--eEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCceEEE
Q 041280 7 ASICKYVWKIENFSKLE-----AK--FYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFKICV 76 (145)
Q Consensus 7 ~~~~~~~w~I~nfs~~~-----~~--~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~~~~ 76 (145)
...+.|.|+|+|||.++ |+ .++||+|..+ ||+|+|++||||.+.+.++|+|+||.+++.+. ....|++.+
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~ 115 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 115 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence 34799999999999875 34 7999999999 99999999999998777889999999997642 234799999
Q ss_pred EEEEEEEcCCCCc-cc-----ceecceeec-Cc---cccccccceeeccccccCCCCeeeCCEEEEEEEEEE
Q 041280 77 RYTLRIRDQLQSK-HN-----DKIARTWIR-PS---IGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSV 138 (145)
Q Consensus 77 ~f~~~l~n~~~~~-~~-----~~~~~~~F~-~~---~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v 138 (145)
+|+|.|++|.+.. ++ .......|. .. +.+||+++||++++|+. .+||+||++.|+|.|..
T Consensus 116 ~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 116 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEec
Confidence 9999999997531 11 111224575 23 56899999999999987 68999999999998863
No 11
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.95 E-value=8.7e-27 Score=153.47 Aligned_cols=125 Identities=31% Similarity=0.507 Sum_probs=104.2
Q ss_pred CEEEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEEEEEEcCCCCc
Q 041280 10 CKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSK 89 (145)
Q Consensus 10 ~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n~~~~~ 89 (145)
.+++|+|.+|+...++.++|+.|.++|+.|+|.+||+|... ..+|+|+||+|......+..|++.++|+|+|+++++.+
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGK 79 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCc
Confidence 46899999999966888999999999999999999999765 46799999999876544467999999999999998555
Q ss_pred ccceecceeec-CccccccccceeeccccccCCCCeeeCCEEEEEEEEE
Q 041280 90 HNDKIARTWIR-PSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVS 137 (145)
Q Consensus 90 ~~~~~~~~~F~-~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~ 137 (145)
.........|. ..+.+|||.+||++++|+++ .+++||+|+|+|+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v~ 126 (126)
T cd00121 80 SLSKSFTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEVK 126 (126)
T ss_pred cceEeccCCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEEC
Confidence 54444444453 46789999999999999983 349999999999984
No 12
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.95 E-value=1.5e-26 Score=158.97 Aligned_cols=130 Identities=23% Similarity=0.314 Sum_probs=106.9
Q ss_pred cCCCCEEEEEEccccccc-----C--ceEecCcEE--EcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCceEE
Q 041280 6 SASICKYVWKIENFSKLE-----A--KFYESEVFV--AGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVT-RDFKIC 75 (145)
Q Consensus 6 ~~~~~~~~w~I~nfs~~~-----~--~~~~S~~f~--~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~-~~~~~~ 75 (145)
....+.+.|+|+||+++. + ..++||+|. .+||+|+|++||||++.+.+.|||+|+++++++.++ ..|++.
T Consensus 15 ~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred cccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCcee
Confidence 345799999999999986 2 378999995 359999999999999887778999999999988665 789999
Q ss_pred EEEEEEEEcCCCCccccee-----cceeec----CccccccccceeeccccccCCCCeeeCCEEEEEEEE
Q 041280 76 VRYTLRIRDQLQSKHNDKI-----ARTWIR----PSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEV 136 (145)
Q Consensus 76 ~~f~~~l~n~~~~~~~~~~-----~~~~F~----~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i 136 (145)
.+++|+|++|.+.+++... ....|. ..+.+||++.||++++|.++ .+||+||++.|+|.|
T Consensus 95 ~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V 163 (164)
T cd03778 95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV 163 (164)
T ss_pred eEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence 9999999999876554211 111352 24668999999999999863 599999999999987
No 13
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.95 E-value=1.5e-26 Score=159.92 Aligned_cols=126 Identities=20% Similarity=0.304 Sum_probs=99.9
Q ss_pred CCEEEEEEccccccc-----CceEecCcE-EEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCce-EEEEEEE
Q 041280 9 ICKYVWKIENFSKLE-----AKFYESEVF-VAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFK-ICVRYTL 80 (145)
Q Consensus 9 ~~~~~w~I~nfs~~~-----~~~~~S~~f-~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~-~~~~f~~ 80 (145)
+..|.|+|.|||.++ ++.++||+| +++||+|+|++||+|... .++|||+||++.+.+. ...+|+ +.++++|
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~ 79 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATM 79 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEE
Confidence 468999999999985 458999998 999999999999999887 6789999999987643 356799 5899999
Q ss_pred EEEcCCCC----cccce----ec---c-----eeec----------C-------ccccccccceeeccccccCCCCeeeC
Q 041280 81 RIRDQLQS----KHNDK----IA---R-----TWIR----------P-------SIGARGWLQFVELSYLNKASNGLLVH 127 (145)
Q Consensus 81 ~l~n~~~~----~~~~~----~~---~-----~~F~----------~-------~~~~wG~~~fi~~~~L~~~~~~fl~d 127 (145)
+|++|.++ .++.. .. . ..|+ . ++.+|||+.||++++|.+ .+||+|
T Consensus 80 ~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~ 157 (167)
T cd03771 80 TLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKG 157 (167)
T ss_pred EEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcC
Confidence 99999742 12111 00 0 0021 1 345899999999999998 579999
Q ss_pred CEEEEEEEEE
Q 041280 128 DVCIVEAEVS 137 (145)
Q Consensus 128 d~l~i~~~i~ 137 (145)
|+|.|+++++
T Consensus 158 dtl~i~~~~~ 167 (167)
T cd03771 158 DDLIILLDFE 167 (167)
T ss_pred CEEEEEEEeC
Confidence 9999999873
No 14
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.93 E-value=1.7e-25 Score=146.76 Aligned_cols=116 Identities=28% Similarity=0.542 Sum_probs=95.3
Q ss_pred Eccccccc-Cc-eEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCceEEEEEEEEEEcCCCCcccc
Q 041280 16 IENFSKLE-AK-FYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVT-RDFKICVRYTLRIRDQLQSKHND 92 (145)
Q Consensus 16 I~nfs~~~-~~-~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~-~~~~~~~~f~~~l~n~~~~~~~~ 92 (145)
|+|||++. ++ ...|+.|.++|++|+|.+||+++ .+++++||+|..++... .+|++.++++++++++.++....
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 76 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK 76 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence 78999998 33 34458888999999999999996 47999999999875443 68999999999999998886322
Q ss_pred eecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEE
Q 041280 93 KIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSV 138 (145)
Q Consensus 93 ~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v 138 (145)
....+.|+ ...+|||.+||++++|.++ .|++||+|+|+|+|+|
T Consensus 77 ~~~~~~F~-~~~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 77 RIKSHSFN-NPSSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEECEEEC-TTSEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred eeeeeEEe-eecccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence 22247787 5588999999999999984 3999999999999986
No 15
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.87 E-value=1.7e-21 Score=133.09 Aligned_cols=126 Identities=17% Similarity=0.223 Sum_probs=100.8
Q ss_pred CCEEEEEEccccccc-----CceEecCcE-EEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCceEE-EEEEE
Q 041280 9 ICKYVWKIENFSKLE-----AKFYESEVF-VAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTV-TRDFKIC-VRYTL 80 (145)
Q Consensus 9 ~~~~~w~I~nfs~~~-----~~~~~S~~f-~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~-~~~~~~~-~~f~~ 80 (145)
+..+.|+|+||+++. +..++||+| +..||+.++.+||||.+.+ +.|||+|+++++++.+ -..||+. -+++|
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~ 79 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATM 79 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEE
Confidence 467899999999986 457999999 4589999999999998875 6799999999998743 5689999 89999
Q ss_pred EEEcCCCC----cccce--e-------c-ceee--cC-----------------ccccccccceeeccccccCCCCeeeC
Q 041280 81 RIRDQLQS----KHNDK--I-------A-RTWI--RP-----------------SIGARGWLQFVELSYLNKASNGLLVH 127 (145)
Q Consensus 81 ~l~n~~~~----~~~~~--~-------~-~~~F--~~-----------------~~~~wG~~~fi~~~~L~~~~~~fl~d 127 (145)
.|++|.++ .++.. . . ...| +. ++.++|++.||++++|.. +.||+|
T Consensus 80 ~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikd 157 (167)
T cd03782 80 MLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKG 157 (167)
T ss_pred EEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccC
Confidence 99999752 12211 0 1 1134 21 168899999999999998 789999
Q ss_pred CEEEEEEEEE
Q 041280 128 DVCIVEAEVS 137 (145)
Q Consensus 128 d~l~i~~~i~ 137 (145)
|++.|-++++
T Consensus 158 D~ifi~~~~e 167 (167)
T cd03782 158 DDVIFLLTME 167 (167)
T ss_pred CeEEEEEecC
Confidence 9999988763
No 16
>smart00061 MATH meprin and TRAF homology.
Probab=99.85 E-value=1.3e-20 Score=118.81 Aligned_cols=93 Identities=22% Similarity=0.361 Sum_probs=78.6
Q ss_pred EEEEEccccccc-CceEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEEEEEEcCCCCcc
Q 041280 12 YVWKIENFSKLE-AKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSKH 90 (145)
Q Consensus 12 ~~w~I~nfs~~~-~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n~~~~~~ 90 (145)
++|.|+||+++. ++.++|++|.++|++|+|.+||+ .+|+|+||.|.+....+.+|++.|+|+++|+++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~ 75 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL 75 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence 579999999985 78899999999999999999999 37999999998765444589999999999999987654
Q ss_pred cceecceeecCcccccccccee
Q 041280 91 NDKIARTWIRPSIGARGWLQFV 112 (145)
Q Consensus 91 ~~~~~~~~F~~~~~~wG~~~fi 112 (145)
.+...+.|.. ..+|||.+||
T Consensus 76 -~~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 76 -SKKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred -eeeeeEEEcC-CCccceeeEC
Confidence 3345677875 7889999885
No 17
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.85 E-value=7e-21 Score=130.67 Aligned_cols=127 Identities=17% Similarity=0.306 Sum_probs=99.1
Q ss_pred CCEEEEEEccccccc-----CceEecCcEEE-cceEEEEEEEeCCCCC-CCCCeEEEEEEecCCCCC-CCCceE-EEEEE
Q 041280 9 ICKYVWKIENFSKLE-----AKFYESEVFVA-GDQKWKIRLYPKGQGQ-RTGSHLSMFLALADSSTV-TRDFKI-CVRYT 79 (145)
Q Consensus 9 ~~~~~w~I~nfs~~~-----~~~~~S~~f~~-~g~~W~l~~~p~g~~~-~~~~~ls~yL~~~~~~~~-~~~~~~-~~~f~ 79 (145)
+..+.|+|.||+++. +..++||+|.. .||+.+|++||+|... +.+.|+|+|+++++++.+ -..|++ .-+++
T Consensus 1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence 357899999999975 45799999965 5999999999999874 556799999999998743 568995 56899
Q ss_pred EEEEcCCCC----cccce-----e--cce------eecC--------------ccccccccceeeccccccCCCCeeeCC
Q 041280 80 LRIRDQLQS----KHNDK-----I--ART------WIRP--------------SIGARGWLQFVELSYLNKASNGLLVHD 128 (145)
Q Consensus 80 ~~l~n~~~~----~~~~~-----~--~~~------~F~~--------------~~~~wG~~~fi~~~~L~~~~~~fl~dd 128 (145)
|.|++|+++ .++.+ . ... .|.. ++.++||+.||++++|.. .+||+||
T Consensus 81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdD 158 (167)
T cd03783 81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKND 158 (167)
T ss_pred EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCC
Confidence 999999752 12210 0 000 1321 356899999999999998 7999999
Q ss_pred EEEEEEEEE
Q 041280 129 VCIVEAEVS 137 (145)
Q Consensus 129 ~l~i~~~i~ 137 (145)
+|.|.++++
T Consensus 159 tlfI~~~~~ 167 (167)
T cd03783 159 DLIIFVDFE 167 (167)
T ss_pred eEEEEEecC
Confidence 999998863
No 18
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.5e-17 Score=133.10 Aligned_cols=132 Identities=21% Similarity=0.393 Sum_probs=109.8
Q ss_pred cCCCCEEEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC--CC-CCceEEEEEEEEE
Q 041280 6 SASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSST--VT-RDFKICVRYTLRI 82 (145)
Q Consensus 6 ~~~~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~--~~-~~~~~~~~f~~~l 82 (145)
+...-++.|+|++++++.+ .++||+|.+||++|+|.++|.|+... -+||||+....+. .+ ..|.|+|+|.|.+
T Consensus 35 e~~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~I 110 (1089)
T COG5077 35 ELLEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDI 110 (1089)
T ss_pred HHhhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeec
Confidence 4455689999999999975 57899999999999999999997654 3999999876431 12 2499999999999
Q ss_pred EcCCCCcc-cceecceeecCccccccccceeeccccccCCC---CeeeCCEEEEEEEEEEEee
Q 041280 83 RDQLQSKH-NDKIARTWIRPSIGARGWLQFVELSYLNKASN---GLLVHDVCIVEAEVSVLGI 141 (145)
Q Consensus 83 ~n~~~~~~-~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~---~fl~dd~l~i~~~i~v~~~ 141 (145)
-|+..+.. ....+.|+|+....+|||.+|+.+..|..|+. .|+.+|++.|.+.|+|+++
T Consensus 111 s~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 111 SNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred CCCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 99887542 24567789998889999999999999988754 4788999999999999876
No 19
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.92 E-value=2.5e-08 Score=75.16 Aligned_cols=120 Identities=29% Similarity=0.506 Sum_probs=95.9
Q ss_pred EEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEEEEEEcCCCCcc-
Q 041280 12 YVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSKH- 90 (145)
Q Consensus 12 ~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n~~~~~~- 90 (145)
+.|.+.+++... ..++|..|..+|..|++.+||.|+ +++.|+.+.... +|.+.+.+++.++|+...+.
T Consensus 6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~ 74 (297)
T KOG1987|consen 6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYL 74 (297)
T ss_pred cceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC----CcceeEEEEEEEccCCCccee
Confidence 339999998886 667899999999999999999984 789999988642 79999999999999988754
Q ss_pred cce-ecceeecCc--cccccccceeeccccccCCCCeeeCCEEEEEEEEEEEeec
Q 041280 91 NDK-IARTWIRPS--IGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGIS 142 (145)
Q Consensus 91 ~~~-~~~~~F~~~--~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~~ 142 (145)
... .....|... ...||+..+++...+.++..||++++.+++-....|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~ 129 (297)
T KOG1987|consen 75 STVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAM 129 (297)
T ss_pred eeeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeee
Confidence 322 233334332 5789999999999999988999999888887777666543
No 20
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.7e-08 Score=85.55 Aligned_cols=128 Identities=19% Similarity=0.185 Sum_probs=102.7
Q ss_pred EEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEEEEEEcCCCCc-c
Q 041280 12 YVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSK-H 90 (145)
Q Consensus 12 ~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n~~~~~-~ 90 (145)
.+|...+..++.. ...||.|..++.+|++.+.|+++. ...+++|+.+...... ..|.+.+.+.+.+.|..++. .
T Consensus 29 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~~~ 103 (1093)
T KOG1863|consen 29 TTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNLPD 103 (1093)
T ss_pred ccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCC-cceEecchhhhccccCCCCchh
Confidence 3355544444433 667999999999999999999973 3679999999976654 45999999999999933332 2
Q ss_pred cceecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEeeccC
Q 041280 91 NDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISKA 144 (145)
Q Consensus 91 ~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~~~~ 144 (145)
......|.|.....+||+..|+.++++..|..+|+.+|++.++++|++...++.
T Consensus 104 ~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 157 (1093)
T KOG1863|consen 104 PEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL 157 (1093)
T ss_pred hhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence 345567889888899999999999999999999999999999999999776653
No 21
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.68 E-value=3.1e-05 Score=60.77 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=68.2
Q ss_pred cCCCCEEEEEEccccccc-------CceEecCcEE--EcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCceEE
Q 041280 6 SASICKYVWKIENFSKLE-------AKFYESEVFV--AGDQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFKIC 75 (145)
Q Consensus 6 ~~~~~~~~w~I~nfs~~~-------~~~~~S~~f~--~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~~~ 75 (145)
....+.+.|+|.++...+ +..++|+.|. ..||+.+..+|-||++.+.+-++|+|+.+...+. ....|+++
T Consensus 276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~ 355 (391)
T KOG0297|consen 276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFR 355 (391)
T ss_pred hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCC
Confidence 345789999999995543 4578899995 5799999999999998888889999999998764 35789999
Q ss_pred EEEEEEEEcC
Q 041280 76 VRYTLRIRDQ 85 (145)
Q Consensus 76 ~~f~~~l~n~ 85 (145)
-+.++.+++|
T Consensus 356 ~~v~~~l~dq 365 (391)
T KOG0297|consen 356 QKVTLMLLDQ 365 (391)
T ss_pred CceEEEEecc
Confidence 9999999999
No 22
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=30.64 E-value=81 Score=18.90 Aligned_cols=16 Identities=25% Similarity=0.806 Sum_probs=14.0
Q ss_pred EEcceEEEEEEEeCCC
Q 041280 33 VAGDQKWKIRLYPKGQ 48 (145)
Q Consensus 33 ~~~g~~W~l~~~p~g~ 48 (145)
.++|++|+-.+.|.|.
T Consensus 38 tI~g~~~~~sl~p~g~ 53 (80)
T PF08922_consen 38 TIDGHPWRTSLFPMGN 53 (80)
T ss_dssp EETTEEEEEEEEESST
T ss_pred EECCEEEEEEEEECCC
Confidence 5889999999999764
No 23
>PF06565 DUF1126: Repeat of unknown function (DUF1126); InterPro: IPR010554 This group contains several eukaryote specific repeats of around 35 residues in length. The function of this family is unknown.; PDB: 2Z14_A 2Z13_A.
Probab=29.24 E-value=29 Score=17.25 Aligned_cols=10 Identities=20% Similarity=0.185 Sum_probs=7.7
Q ss_pred eeeCCEEEEE
Q 041280 124 LLVHDVCIVE 133 (145)
Q Consensus 124 fl~dd~l~i~ 133 (145)
||.||++.|.
T Consensus 5 ~L~DdTi~I~ 14 (33)
T PF06565_consen 5 YLADDTISIF 14 (33)
T ss_dssp ETTTTEEEEE
T ss_pred EccCCCEEEE
Confidence 6788988774
No 24
>PF12197 lci: Bacillus cereus group antimicrobial protein; InterPro: IPR020976 This entry represents antimicrobial peptides from bacteria of approximately 40 amino acids in length.; PDB: 2B9K_A.
Probab=26.86 E-value=1.1e+02 Score=16.40 Aligned_cols=32 Identities=9% Similarity=0.179 Sum_probs=17.9
Q ss_pred eEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEE
Q 041280 26 FYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMF 59 (145)
Q Consensus 26 ~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~y 59 (145)
.+....|...|.+|.+.=.-... ..+.+++.|
T Consensus 10 GvFAN~F~~~GitWYfKg~~~~~--~~g~~vg~Y 41 (45)
T PF12197_consen 10 GVFANSFSDDGITWYFKGKHTKN--SDGTWVGYY 41 (45)
T ss_dssp -----EEEETTEEEEEEEEEE-T--TTSSEEEEE
T ss_pred CceEEEEEcCCcEEEEeeeEEec--CCccEEEEE
Confidence 35677888899999998652211 224577776
No 25
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=25.75 E-value=1.5e+02 Score=17.52 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=23.3
Q ss_pred EcceEEEEEEEeCCCCCCCCCeEEEEEEecCC
Q 041280 34 AGDQKWKIRLYPKGQGQRTGSHLSMFLALADS 65 (145)
Q Consensus 34 ~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~ 65 (145)
..=.+|-+..-|+....+-+|||=+-+.....
T Consensus 13 ~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 13 QFYRKWALLTDPDDTSAGVKGYLKVDISVLGP 44 (72)
T ss_pred eeEeceEEecCCCCCccCCceEEEEEEEEEcC
Confidence 34478888888887766667787777777654
No 26
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=25.06 E-value=26 Score=25.07 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=20.3
Q ss_pred cccccccceeeccccccCCCCeee
Q 041280 103 IGARGWLQFVELSYLNKASNGLLV 126 (145)
Q Consensus 103 ~~~wG~~~fi~~~~L~~~~~~fl~ 126 (145)
...|||....++.+|.+....||.
T Consensus 73 qs~~Gw~~~~K~~El~~~~~~Yi~ 96 (202)
T KOG2488|consen 73 QSSWGWDDNSKAKELRNRKLRYIC 96 (202)
T ss_pred hcccccCchhHHHHHhhccceEEE
Confidence 466999999999999987777874
No 27
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=22.61 E-value=1.1e+02 Score=23.52 Aligned_cols=38 Identities=8% Similarity=0.126 Sum_probs=26.4
Q ss_pred cCccccccccceeeccccccCCCCeeeCCEEEEEEEEE
Q 041280 100 RPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVS 137 (145)
Q Consensus 100 ~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~ 137 (145)
+..++..|+.++++.++-.+...-++.++.|+|+++=+
T Consensus 21 ~~~DPT~G~V~Yv~~~~A~~~gL~~v~~g~l~i~vd~t 58 (293)
T cd02181 21 TGDDPTHGFVNYVDQSTATSLGLAYVNSGNVYLGVDST 58 (293)
T ss_pred CCCCCCCeeEEEEcHHHHhhCCCeEeeCCeEEEEEece
Confidence 34567788888888887766433455678888887654
Done!