Query 041280
Match_columns 145
No_of_seqs 109 out of 1057
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 09:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2foj_A Ubiquitin carboxyl-term 100.0 4.8E-36 1.6E-40 205.4 14.8 137 7-145 16-154 (155)
2 3ivv_A Speckle-type POZ protei 100.0 2.6E-35 8.8E-40 199.8 11.0 134 3-141 4-145 (145)
3 4gjh_A TNF receptor-associated 100.0 1E-33 3.5E-38 198.0 7.6 136 6-141 20-175 (178)
4 1ca9_A TRAF2, protein (TNF rec 100.0 5.2E-33 1.8E-37 196.5 5.5 133 7-140 40-191 (192)
5 1d00_A Tumor necrosis factor r 100.0 2.5E-32 8.7E-37 189.1 7.1 134 6-140 15-167 (168)
6 4ghu_A TNF receptor-associated 100.0 4.2E-32 1.4E-36 192.6 7.1 136 6-143 36-191 (198)
7 1lb6_A TNF receptor-associated 100.0 2.9E-31 9.8E-36 182.6 10.5 133 7-141 2-158 (160)
8 2gkw_A TNF receptor-associated 100.0 2.4E-31 8.1E-36 188.0 6.7 133 7-141 37-189 (192)
9 3hqi_A Speckle-type POZ protei 100.0 2.4E-30 8.2E-35 194.5 10.4 131 6-141 3-141 (312)
10 1flk_A TNF receptor associated 100.0 5.4E-31 1.8E-35 190.6 5.6 134 7-142 73-226 (228)
11 2f1z_A Ubiquitin carboxyl-term 100.0 2.6E-29 8.7E-34 200.6 12.1 135 7-143 28-164 (522)
12 4gwm_A Meprin A subunit beta; 99.7 1.5E-16 5.1E-21 127.9 10.5 129 3-138 399-565 (592)
13 3v0r_A Major allergen ALT A 1; 47.7 4.1 0.00014 26.2 0.1 28 7-34 9-38 (133)
14 2d9r_A Conserved hypothetical 24.7 77 0.0026 19.3 3.2 16 33-48 59-74 (104)
No 1
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=100.00 E-value=4.8e-36 Score=205.43 Aligned_cols=137 Identities=15% Similarity=0.202 Sum_probs=116.5
Q ss_pred CCCCEEEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCC-CCCCeEEEEEEecCCCCCCCCceEEEEEEEEEEcC
Q 041280 7 ASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQ-RTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQ 85 (145)
Q Consensus 7 ~~~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~-~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n~ 85 (145)
+..++++|+|+|||.++ +.++|++|.++|++|+|++||+|+.. +..+|||+||+|... ..+.+|++.|+|+|+|+||
T Consensus 16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~ 93 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY 93 (155)
T ss_dssp CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCS
T ss_pred CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcC
Confidence 45589999999999995 77899999999999999999999765 356899999999644 3456799999999999999
Q ss_pred CCCc-ccceecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEeeccCC
Q 041280 86 LQSK-HNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISKAL 145 (145)
Q Consensus 86 ~~~~-~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~~~~~ 145 (145)
.++. +..+...+.|.....+|||++||++++|++|.+|||+||+|+|+|+|+|.+++|.+
T Consensus 94 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~ 154 (155)
T 2foj_A 94 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA 154 (155)
T ss_dssp SCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred CCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence 8875 44455667888667899999999999999888899999999999999999999864
No 2
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=100.00 E-value=2.6e-35 Score=199.79 Aligned_cols=134 Identities=24% Similarity=0.399 Sum_probs=115.5
Q ss_pred ecccCCCCEEEEEEccccccc---CceEecCcEEEcce---EEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEE
Q 041280 3 KLTSASICKYVWKIENFSKLE---AKFYESEVFVAGDQ---KWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICV 76 (145)
Q Consensus 3 ~~~~~~~~~~~w~I~nfs~~~---~~~~~S~~f~~~g~---~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~ 76 (145)
.|.+...++++|+|+|||.++ ++.++||+|.++|+ +|+|++||+|+..+..+|||+||+|.+. ++|+++|
T Consensus 4 ~m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a 79 (145)
T 3ivv_A 4 GSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRA 79 (145)
T ss_dssp -CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEE
T ss_pred CCCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEE
Confidence 467788899999999999986 57899999999995 9999999999887667899999999865 4699999
Q ss_pred EEEEEEEcCCCCccc--ceecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEee
Q 041280 77 RYTLRIRDQLQSKHN--DKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGI 141 (145)
Q Consensus 77 ~f~~~l~n~~~~~~~--~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~ 141 (145)
+|+|+|+||.+++.. .....+.|. .+.+|||++||++++|+++.++||+||+|+|+|+|+|+++
T Consensus 80 ~f~l~llnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 80 KFKFSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEEEEEECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEEEEEecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 999999999987643 223457786 5789999999999999866689999999999999999864
No 3
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=100.00 E-value=1e-33 Score=197.98 Aligned_cols=136 Identities=21% Similarity=0.303 Sum_probs=113.2
Q ss_pred cCCCCEEEEEEcccccccC-------ceEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCceEE
Q 041280 6 SASICKYVWKIENFSKLEA-------KFYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFKIC 75 (145)
Q Consensus 6 ~~~~~~~~w~I~nfs~~~~-------~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~~~ 75 (145)
.+..+.|+|+|+|||.+++ ..++||+|.+| |++|+|++||+|+..+.++|||+||+|.+.+. ...+|+++
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~ 99 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR 99 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence 5678999999999999863 27999999999 99999999999988766789999999986542 23579999
Q ss_pred EEEEEEEEcCCCCc-cccee-----cceeecC----ccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEee
Q 041280 76 VRYTLRIRDQLQSK-HNDKI-----ARTWIRP----SIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGI 141 (145)
Q Consensus 76 ~~f~~~l~n~~~~~-~~~~~-----~~~~F~~----~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~ 141 (145)
|+|+|+|+||.+++ ++... ..+.|+. .+.+|||.+||++++|++|.+|||+||+|+|+|+|+|.+.
T Consensus 100 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 100 QRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp CEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred EEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence 99999999999764 22221 2356762 3578999999999999998889999999999999987543
No 4
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.97 E-value=5.2e-33 Score=196.50 Aligned_cols=133 Identities=23% Similarity=0.339 Sum_probs=109.8
Q ss_pred CCCCEEEEEEcccccccC-----c--eEecCcEEE--cceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCceEEE
Q 041280 7 ASICKYVWKIENFSKLEA-----K--FYESEVFVA--GDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVT-RDFKICV 76 (145)
Q Consensus 7 ~~~~~~~w~I~nfs~~~~-----~--~~~S~~f~~--~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~-~~~~~~~ 76 (145)
...++|+|+|+|||.+++ + .++||+|.+ ||++|+|++||+|++.+.++|||+||++.+.+..+ .+|++.|
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 578999999999999863 2 589999999 99999999999998766678999999998765433 6899999
Q ss_pred EEEEEEEcCCCCccccee-----cceeec----CccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEe
Q 041280 77 RYTLRIRDQLQSKHNDKI-----ARTWIR----PSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLG 140 (145)
Q Consensus 77 ~f~~~l~n~~~~~~~~~~-----~~~~F~----~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~ 140 (145)
+|+|+|+||.++++.... ....|. ..+.+|||++||++++|++ .+|||+||+|+|+|+|+|.+
T Consensus 120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 999999999987543221 112354 2357899999999999995 37999999999999998753
No 5
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.97 E-value=2.5e-32 Score=189.13 Aligned_cols=134 Identities=23% Similarity=0.330 Sum_probs=109.6
Q ss_pred cCCCCEEEEEEcccccccC-----c--eEecCcEE--EcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCceEE
Q 041280 6 SASICKYVWKIENFSKLEA-----K--FYESEVFV--AGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVT-RDFKIC 75 (145)
Q Consensus 6 ~~~~~~~~w~I~nfs~~~~-----~--~~~S~~f~--~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~-~~~~~~ 75 (145)
....++|+|+|+|||.+++ + .++||+|. +||++|+|++||+|+..+.++|||+||++.+.+..+ .+|+++
T Consensus 15 ~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~ 94 (168)
T 1d00_A 15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFN 94 (168)
T ss_dssp CCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred cccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceE
Confidence 3578999999999999862 3 38999996 789999999999998766678999999998765433 689999
Q ss_pred EEEEEEEEcCCCCcccceec-----ceeecC----ccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEe
Q 041280 76 VRYTLRIRDQLQSKHNDKIA-----RTWIRP----SIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLG 140 (145)
Q Consensus 76 ~~f~~~l~n~~~~~~~~~~~-----~~~F~~----~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~ 140 (145)
++|+|+|+||.+.++..... .+.|.. .+.+|||++||++++|+++ +|||+||+|+|+|+|+|.+
T Consensus 95 ~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred EEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence 99999999999876442221 234642 4678999999999999984 4999999999999998743
No 6
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.97 E-value=4.2e-32 Score=192.60 Aligned_cols=136 Identities=21% Similarity=0.294 Sum_probs=111.1
Q ss_pred cCCCCEEEEEEcccccccC-------ceEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCceEE
Q 041280 6 SASICKYVWKIENFSKLEA-------KFYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSSTV-TRDFKIC 75 (145)
Q Consensus 6 ~~~~~~~~w~I~nfs~~~~-------~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~-~~~~~~~ 75 (145)
.+..+.++|+|+|||.+++ +.++||+|.+| |++|+|++||+|++.+.++|||+||.+.+++.. ..+|+++
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~ 115 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK 115 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEE
Confidence 4678999999999999863 68999999999 999999999999887667899999999876532 3579999
Q ss_pred EEEEEEEEcCCCCc-cccee-----ccee----ecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEeecc
Q 041280 76 VRYTLRIRDQLQSK-HNDKI-----ARTW----IRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISK 143 (145)
Q Consensus 76 ~~f~~~l~n~~~~~-~~~~~-----~~~~----F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~~~ 143 (145)
|+|+|.|+||.+.+ ++... .... |...+.+|||++||++++|++ +|||+||+|+|+|+|+|+....
T Consensus 116 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~~ 191 (198)
T 4ghu_A 116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 191 (198)
T ss_dssp CCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC-
T ss_pred EEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCCC
Confidence 99999999998753 22211 1112 333567899999999999997 7999999999999999876543
No 7
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.97 E-value=2.9e-31 Score=182.58 Aligned_cols=133 Identities=22% Similarity=0.249 Sum_probs=104.3
Q ss_pred CCCCEEEEEEccccccc-----Cc--eEecCcEEEc--ceEEEEEEEeCCCCCC-CCCeEEEEEEecCCCCC-CCCceEE
Q 041280 7 ASICKYVWKIENFSKLE-----AK--FYESEVFVAG--DQKWKIRLYPKGQGQR-TGSHLSMFLALADSSTV-TRDFKIC 75 (145)
Q Consensus 7 ~~~~~~~w~I~nfs~~~-----~~--~~~S~~f~~~--g~~W~l~~~p~g~~~~-~~~~ls~yL~~~~~~~~-~~~~~~~ 75 (145)
+..++|.|+|+|||.++ ++ .++||+|.+| |++|+|++||+|++.+ .++|||+||.+.+.+.. ..+|+++
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 35689999999999986 33 8999999999 9999999999997754 36899999999876532 3569999
Q ss_pred EEEEEEEEcCCCCcc---ccee-----cceeecC-----ccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEee
Q 041280 76 VRYTLRIRDQLQSKH---NDKI-----ARTWIRP-----SIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGI 141 (145)
Q Consensus 76 ~~f~~~l~n~~~~~~---~~~~-----~~~~F~~-----~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~ 141 (145)
|+|+|+|+||.+... .... ....|.. .+.+|||++||++++|++ +|||+||+|+|+|+|.|+.+
T Consensus 82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC---
T ss_pred eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEeec
Confidence 999999999986521 1111 1123432 134799999999999996 79999999999999999765
No 8
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.97 E-value=2.4e-31 Score=188.01 Aligned_cols=133 Identities=23% Similarity=0.324 Sum_probs=109.4
Q ss_pred CCCCEEEEEEccccccc-----Cc--eEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCceEEE
Q 041280 7 ASICKYVWKIENFSKLE-----AK--FYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSSTV-TRDFKICV 76 (145)
Q Consensus 7 ~~~~~~~w~I~nfs~~~-----~~--~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~-~~~~~~~~ 76 (145)
...++|.|+|+|||.++ ++ .++||+|.+| |++|+|++||+|++.+.++|+|+||.+.+.+.. ..+|++.+
T Consensus 37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 116 (192)
T 2gkw_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (192)
T ss_dssp CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEE
Confidence 37899999999999986 33 5899999999 999999999999876667899999999876543 35799999
Q ss_pred EEEEEEEcCCCCc-cccee-----cceeecC----ccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEee
Q 041280 77 RYTLRIRDQLQSK-HNDKI-----ARTWIRP----SIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGI 141 (145)
Q Consensus 77 ~f~~~l~n~~~~~-~~~~~-----~~~~F~~----~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~ 141 (145)
+|+|+|+||.+.+ ++... ..+.|.. .+.+|||++||++++|++ +|||+||+|+|+|+|.|.+.
T Consensus 117 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~~ 189 (192)
T 2gkw_A 117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDL 189 (192)
T ss_dssp CEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTTS
T ss_pred EEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCCC
Confidence 9999999999874 33211 1245653 257899999999999998 59999999999999987543
No 9
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.97 E-value=2.4e-30 Score=194.53 Aligned_cols=131 Identities=24% Similarity=0.412 Sum_probs=108.9
Q ss_pred cCCCCEEEEEEccccccc---CceEecCcEEEcce---EEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEE
Q 041280 6 SASICKYVWKIENFSKLE---AKFYESEVFVAGDQ---KWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYT 79 (145)
Q Consensus 6 ~~~~~~~~w~I~nfs~~~---~~~~~S~~f~~~g~---~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~ 79 (145)
+...++++|+|+|||.++ ++.++||+|.+||+ +|+|.+||+|.+++.++|+|+||.|.++ ++|++.|+|+
T Consensus 3 ~~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~ 78 (312)
T 3hqi_A 3 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFK 78 (312)
T ss_dssp EEEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEE
T ss_pred ceEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEE
Confidence 445689999999999996 78899999999985 9999999999887667899999999865 3699999999
Q ss_pred EEEEcCCCCcccc--eecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEee
Q 041280 80 LRIRDQLQSKHND--KIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGI 141 (145)
Q Consensus 80 ~~l~n~~~~~~~~--~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~ 141 (145)
|+|+|+.+++... ....+.|+ .+.+|||++||+|++|+++.+|||+||+|+|+|+|+|++.
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~ 141 (312)
T 3hqi_A 79 FSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 141 (312)
T ss_dssp EEEECTTSCEEEEEECSSCEEEC-TTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred EEEEeCCCCcccccccCCceeCC-CCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence 9999999876432 23456787 4568999999999999887789999999999999999853
No 10
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.96 E-value=5.4e-31 Score=190.64 Aligned_cols=134 Identities=22% Similarity=0.303 Sum_probs=110.7
Q ss_pred CCCCEEEEEEcccccccC-------ceEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCceEEE
Q 041280 7 ASICKYVWKIENFSKLEA-------KFYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSSTV-TRDFKICV 76 (145)
Q Consensus 7 ~~~~~~~w~I~nfs~~~~-------~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~-~~~~~~~~ 76 (145)
+..++|.|+|+|||.+++ ..++||+|.+| |++|+|++||+|++.+.++|+|+||.+.+++.. ..+|++.+
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a 152 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 152 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence 478999999999999862 27899999999 999999999999877667899999999876543 45799999
Q ss_pred EEEEEEEcCCCCc-ccce-----ecceeec----CccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEeec
Q 041280 77 RYTLRIRDQLQSK-HNDK-----IARTWIR----PSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGIS 142 (145)
Q Consensus 77 ~f~~~l~n~~~~~-~~~~-----~~~~~F~----~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~~ 142 (145)
+|+|+|+||.+.+ ++.. ...+.|. ..+.+|||++||++++|++ +|||+||+|+|+|+|.|.+..
T Consensus 153 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~ 226 (228)
T 1flk_A 153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 226 (228)
T ss_dssp CEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTSC
T ss_pred EEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEccccc
Confidence 9999999999775 3321 1123464 2357899999999999997 799999999999999886543
No 11
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.96 E-value=2.6e-29 Score=200.56 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=112.6
Q ss_pred CCCCEEEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCCC-CCCeEEEEEEecCCCCCCCCceEEEEEEEEEEcC
Q 041280 7 ASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQR-TGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQ 85 (145)
Q Consensus 7 ~~~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~-~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n~ 85 (145)
...++++|+|+|||.+++ .++|++|.+||++|+|.+||+|+..+ ..+|||+||.+... ..+.+|.+.|+|+|+|+|+
T Consensus 28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~ 105 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY 105 (522)
T ss_dssp CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT
T ss_pred cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC
Confidence 456899999999999976 78999999999999999999997543 56899999999876 4567899999999999999
Q ss_pred CCCc-ccceecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEeecc
Q 041280 86 LQSK-HNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISK 143 (145)
Q Consensus 86 ~~~~-~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~~~ 143 (145)
.+++ +..+...+.|...+.+|||.+||++++|.++.+|||+||+++|+|+|+|...+|
T Consensus 106 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g 164 (522)
T 2f1z_A 106 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG 164 (522)
T ss_dssp TCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBS
T ss_pred CCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccccc
Confidence 8765 344566788887778999999999999987778999999999999999976554
No 12
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.68 E-value=1.5e-16 Score=127.85 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=101.6
Q ss_pred ecccCCCCEEEEEEccccccc---CceEecCcEE-EcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCceE-EE
Q 041280 3 KLTSASICKYVWKIENFSKLE---AKFYESEVFV-AGDQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFKI-CV 76 (145)
Q Consensus 3 ~~~~~~~~~~~w~I~nfs~~~---~~~~~S~~f~-~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~~-~~ 76 (145)
++++..+..+.|+|+||+++. +..++||+|. ..||+++|.++|++ ..|+|+|+++.+++. .-..||+ .-
T Consensus 399 s~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~ 473 (592)
T 4gwm_A 399 NLSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQ 473 (592)
T ss_dssp EEESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSE
T ss_pred EEeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCC
Confidence 467788999999999999986 5689999995 67999999999976 469999999998764 3568999 56
Q ss_pred EEEEEEEcCCCCcc----ccee--------c---------------ceeec-----CccccccccceeeccccccCCCCe
Q 041280 77 RYTLRIRDQLQSKH----NDKI--------A---------------RTWIR-----PSIGARGWLQFVELSYLNKASNGL 124 (145)
Q Consensus 77 ~f~~~l~n~~~~~~----~~~~--------~---------------~~~F~-----~~~~~wG~~~fi~~~~L~~~~~~f 124 (145)
++++.|++|.++.. ..+. . ...|. .++.+|||+.||+++.|.. ..|
T Consensus 474 q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~f 551 (592)
T 4gwm_A 474 QATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDF 551 (592)
T ss_dssp EEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTS
T ss_pred EEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCc
Confidence 89999999986531 1110 0 00121 1346799999999999997 689
Q ss_pred eeCCEEEEEEEEEE
Q 041280 125 LVHDVCIVEAEVSV 138 (145)
Q Consensus 125 l~dd~l~i~~~i~v 138 (145)
|+||+++|.++|+=
T Consensus 552 iK~d~~~i~~~~eD 565 (592)
T 4gwm_A 552 IKGDDVYILLTVED 565 (592)
T ss_dssp SBTTBEEEEEEEEE
T ss_pred ccCCeEEEEEEEEe
Confidence 99999999999854
No 13
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=47.69 E-value=4.1 Score=26.24 Aligned_cols=28 Identities=32% Similarity=0.585 Sum_probs=20.3
Q ss_pred CCCCEEEEEEccccccc--CceEecCcEEE
Q 041280 7 ASICKYVWKIENFSKLE--AKFYESEVFVA 34 (145)
Q Consensus 7 ~~~~~~~w~I~nfs~~~--~~~~~S~~f~~ 34 (145)
+..+-+.|+|.+|+..+ +..+.|-.|.+
T Consensus 9 ~~~gd~vwkIs~F~~RKpeGty~nsvsFnI 38 (133)
T 3v0r_A 9 TTEGDYVWKISEFYGRKPEGTYYNSLGFNI 38 (133)
T ss_dssp CCCCTTEEEEEEEEEEETTSSSCSEEEEEE
T ss_pred ccCCceEEEeeeeeeEcCCCCceeeEEEEE
Confidence 34577899999999887 55566666643
No 14
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=24.70 E-value=77 Score=19.31 Aligned_cols=16 Identities=6% Similarity=-0.041 Sum_probs=14.3
Q ss_pred EEcceEEEEEEEeCCC
Q 041280 33 VAGDQKWKIRLYPKGQ 48 (145)
Q Consensus 33 ~~~g~~W~l~~~p~g~ 48 (145)
+++|+.|+-.+.|.|+
T Consensus 59 tI~g~~~~tsL~p~g~ 74 (104)
T 2d9r_A 59 TFDGYPYTGYIVRMGL 74 (104)
T ss_dssp EETTEEEEEEEEESST
T ss_pred EECCEEEEEEEEECCC
Confidence 6789999999999983
Done!