Query 041282
Match_columns 144
No_of_seqs 107 out of 190
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 09:06:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 47.7 29 0.00099 20.2 3.8 15 87-101 16-30 (32)
2 2l8s_A Integrin alpha-1; trans 42.3 44 0.0015 21.7 4.4 30 85-114 21-50 (54)
3 1zv1_A Doublesex protein; UBA 32.5 54 0.0019 22.1 3.8 22 110-131 40-61 (65)
4 2l2t_A Receptor tyrosine-prote 32.0 80 0.0027 19.5 4.3 22 80-101 16-37 (44)
5 3qc0_A Sugar isomerase; TIM ba 31.8 65 0.0022 23.7 4.6 33 102-134 105-137 (275)
6 2k6o_A Cathelicidin antimicrob 31.1 61 0.0021 19.7 3.5 27 111-137 6-32 (37)
7 2k1k_A Ephrin type-A receptor 29.6 59 0.002 19.3 3.3 21 77-97 14-34 (38)
8 3s79_A Cytochrome P450 19A1; o 25.6 51 0.0018 26.4 3.2 38 97-134 39-83 (503)
9 1xwj_B Talin, metavinculin; ce 23.6 34 0.0012 18.7 1.3 20 114-133 2-21 (26)
10 4av3_A K(+)-stimulated pyropho 23.4 96 0.0033 29.2 5.0 35 89-124 23-57 (735)
11 2jz1_A Protein doublesex; sex 23.1 1.5E+02 0.0052 20.6 4.8 36 93-132 27-62 (80)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=47.66 E-value=29 Score=20.24 Aligned_cols=15 Identities=13% Similarity=0.696 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHh
Q 041282 87 VAAISVLSWIYRYVT 101 (144)
Q Consensus 87 ltals~lsW~y~y~~ 101 (144)
++.++.-.|++||+.
T Consensus 16 ltflafgfwlfkylq 30 (32)
T 2lx0_A 16 LTFLAFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 455677789999985
No 2
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=42.33 E-value=44 Score=21.68 Aligned_cols=30 Identities=10% Similarity=0.195 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcHHHH
Q 041282 85 FGVAAISVLSWIYRYVTGGHPPGADQLEQA 114 (144)
Q Consensus 85 ~Gltals~lsW~y~y~~g~~p~g~~~ld~A 114 (144)
+=++.+..+.|-..+|+.+.|+..+.+|.-
T Consensus 21 LLL~Lii~~LwK~GFFKR~~~~~~~~~~~~ 50 (54)
T 2l8s_A 21 LLLMLLILALWKIGFFKRPLKKKMEKLEHH 50 (54)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSCCCCC----
T ss_pred HHHHHHHHHHHHcCcccCCCcchhhHHhhh
Confidence 346677888999999999888777777653
No 3
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=32.54 E-value=54 Score=22.10 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 041282 110 QLEQARMKLASKAREMRDRAEQ 131 (144)
Q Consensus 110 ~ld~Ar~ri~d~A~~v~~kake 131 (144)
.+|.|.+||.|.-.-+.++.|.
T Consensus 40 d~eeAsrrI~Eg~~~v~~ysr~ 61 (65)
T 1zv1_A 40 NIEEASRRIEEGQYVVNEYSRQ 61 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999988888887764
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=31.99 E-value=80 Score=19.50 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=14.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHh
Q 041282 80 LASGGFGVAAISVLSWIYRYVT 101 (144)
Q Consensus 80 l~sg~~Gltals~lsW~y~y~~ 101 (144)
+-+|.+++..+..+.|+|-..|
T Consensus 16 VVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 16 VIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHHHHHHHhhhh
Confidence 3456667777887778776444
No 5
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=31.76 E-value=65 Score=23.68 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=26.0
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhch
Q 041282 102 GGHPPGADQLEQARMKLASKAREMRDRAEQFGQ 134 (144)
Q Consensus 102 g~~p~g~~~ld~Ar~ri~d~A~~v~~kake~G~ 134 (144)
|..|.+....+.+..++.+.-+++.++++++|-
T Consensus 105 g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv 137 (275)
T 3qc0_A 105 GGLPGGSKNIDAARRMVVEGIAAVLPHARAAGV 137 (275)
T ss_dssp BCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444544445788889999999999999999984
No 6
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=31.13 E-value=61 Score=19.66 Aligned_cols=27 Identities=11% Similarity=0.297 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhcc
Q 041282 111 LEQARMKLASKAREMRDRAEQFGQQQS 137 (144)
Q Consensus 111 ld~Ar~ri~d~A~~v~~kake~G~q~~ 137 (144)
+..++.+|.++-+.++||.|++=+.-.
T Consensus 6 lrk~geKig~~~kkIgQkIKdFf~~l~ 32 (37)
T 2k6o_A 6 FRKSKEKIGKEFKRIVQRIKDFLRNLV 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 567899999999999999999876543
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=29.60 E-value=59 Score=19.29 Aligned_cols=21 Identities=10% Similarity=-0.015 Sum_probs=11.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHH
Q 041282 77 MGFLASGGFGVAAISVLSWIY 97 (144)
Q Consensus 77 ~Gfl~sg~~Gltals~lsW~y 97 (144)
+|...+...|++.+..+.|.+
T Consensus 14 AGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHHHH
Confidence 444445555665556555544
No 8
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=25.57 E-value=51 Score=26.42 Aligned_cols=38 Identities=13% Similarity=0.278 Sum_probs=16.5
Q ss_pred HHHHhcCCCCCCCc-------HHHHHHHHHHHHHHHHHHHHHhch
Q 041282 97 YRYVTGGHPPGADQ-------LEQARMKLASKAREMRDRAEQFGQ 134 (144)
Q Consensus 97 y~y~~g~~p~g~~~-------ld~Ar~ri~d~A~~v~~kake~G~ 134 (144)
++|.+.+.||||.. .+.-+..-.+.-....++.|+||.
T Consensus 39 ~~~~~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~ 83 (503)
T 3s79_A 39 WNYEGTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGE 83 (503)
T ss_dssp ------CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCS
T ss_pred HHHhccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCC
Confidence 34445567888843 232221111112245667888984
No 9
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=23.58 E-value=34 Score=18.66 Aligned_cols=20 Identities=15% Similarity=0.317 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 041282 114 ARMKLASKAREMRDRAEQFG 133 (144)
Q Consensus 114 Ar~ri~d~A~~v~~kake~G 133 (144)
+++.+.|.++.|.||..++-
T Consensus 2 ~q~el~~~~r~v~ekV~~vl 21 (26)
T 1xwj_B 2 TKKELIESARKVSEKVSHVL 21 (26)
T ss_dssp -CCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888887653
No 10
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=23.42 E-value=96 Score=29.16 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Q 041282 89 AISVLSWIYRYVTGGHPPGADQLEQARMKLASKARE 124 (144)
Q Consensus 89 als~lsW~y~y~~g~~p~g~~~ld~Ar~ri~d~A~~ 124 (144)
++..-.|.|+++. ++|+|.|+|.+-.+.|+|.|+-
T Consensus 23 ~l~~a~~~~~~v~-~~~~G~~~M~eIa~~I~eGA~a 57 (735)
T 4av3_A 23 ALGFAAANFAAVV-RKPEGTERMKEISSYIRSGADS 57 (735)
T ss_dssp HHHHHHHHHHHHH-TSCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHH
Confidence 3445566777765 4778998887777777777654
No 11
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=23.12 E-value=1.5e+02 Score=20.60 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 041282 93 LSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAEQF 132 (144)
Q Consensus 93 lsW~y~y~~g~~p~g~~~ld~Ar~ri~d~A~~v~~kake~ 132 (144)
+.|||=-+++.. .| +|.|.+||.|.-..+.++.|..
T Consensus 27 MpLMyVILK~a~---~d-~eeAsrrI~eg~~~vn~~~r~h 62 (80)
T 2jz1_A 27 MPLMYVILKDAD---AN-IEEASRRIEEGQYVVNEYSRQH 62 (80)
T ss_dssp HHHHHHHHHHTT---TC-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccC---CC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 356665555432 33 9999999999888888876643
Done!