Query 041282
Match_columns 144
No_of_seqs 107 out of 190
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 09:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041282.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041282hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 62.3 5.3 0.00039 22.4 3.7 22 32-53 5-26 (34)
2 d1ijwc_ a.4.1.2 (C:) HIN recom 46.0 4.3 0.00031 23.8 1.5 31 102-133 1-32 (47)
3 d2o7ta2 a.121.1.1 (A:79-188) T 30.1 21 0.0015 23.4 3.2 28 107-134 34-61 (110)
4 d1pv7a_ f.38.1.2 (A:) Lactose 28.4 66 0.0048 21.6 5.8 11 111-121 406-416 (417)
5 d1r2ja1 a.29.3.1 (A:213-365) P 25.3 66 0.0048 20.8 5.2 43 82-125 19-63 (153)
6 d1qkra_ a.24.9.1 (A:) Vinculin 23.8 17 0.0012 26.4 1.9 44 91-135 48-91 (181)
7 d1vr4a1 d.230.5.1 (A:1-103) Hy 17.8 22 0.0016 23.1 1.3 38 98-138 41-78 (103)
8 d3dhwa1 f.58.1.1 (A:6-208) D-m 17.6 1.3E+02 0.0098 19.8 6.4 16 42-57 14-29 (203)
9 d1siqa1 a.29.3.1 (A:239-392) G 15.0 1.1E+02 0.008 19.9 4.6 36 90-125 24-61 (154)
10 d1t33a1 a.4.1.9 (A:1-88) Putat 12.7 18 0.0013 22.0 -0.3 11 94-104 46-56 (88)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=62.26 E-value=5.3 Score=22.35 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041282 32 AGGSLLVLSGLTMAGTVIALTI 53 (144)
Q Consensus 32 ~g~~LL~LaGlTL~gtvigL~v 53 (144)
++++-+...|+||.|..||+++
T Consensus 5 iagta~tmig~tl~glaigfvl 26 (34)
T d1q90m_ 5 IAGTALTMVGMTLVGLAIGFVL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHhh
Confidence 4566788889999999998765
No 2
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=46.02 E-value=4.3 Score=23.80 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=23.4
Q ss_pred cCCCC-CCCcHHHHHHHHHHHHHHHHHHHHHhc
Q 041282 102 GGHPP-GADQLEQARMKLASKAREMRDRAEQFG 133 (144)
Q Consensus 102 g~~p~-g~~~ld~Ar~ri~d~A~~v~~kake~G 133 (144)
|+.|. -+||+++||.++.+. .-+.|-|+++|
T Consensus 1 GR~~~lt~~q~~~a~~l~~~G-~s~~~iA~~~g 32 (47)
T d1ijwc_ 1 GRPRAINKHEQEQISRLLEKG-HPRQQLAIIFG 32 (47)
T ss_dssp CCCCSSCHHHHHHHHHHHHTT-CCHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHHHCC-CCHHHHHHHHC
Confidence 34443 357899999999765 67888899888
No 3
>d2o7ta2 a.121.1.1 (A:79-188) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=30.07 E-value=21 Score=23.37 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhch
Q 041282 107 GADQLEQARMKLASKAREMRDRAEQFGQ 134 (144)
Q Consensus 107 g~~~ld~Ar~ri~d~A~~v~~kake~G~ 134 (144)
..+++..+|.|+.+....+-++||+-|.
T Consensus 34 ~~~~~~~~r~~l~~~~~~ll~rA~~aG~ 61 (110)
T d2o7ta2 34 LPDEVSALRRTTEKNTTTLINLAKQHGL 61 (110)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4668999999999999999999999884
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=28.39 E-value=66 Score=21.61 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=7.4
Q ss_pred HHHHHHHHHHH
Q 041282 111 LEQARMKLASK 121 (144)
Q Consensus 111 ld~Ar~ri~d~ 121 (144)
.+..|+|+.|-
T Consensus 406 ~~~~r~~~~e~ 416 (417)
T d1pv7a_ 406 LSLLRRQVNEV 416 (417)
T ss_dssp TTHHHHHHHHH
T ss_pred cchhHhhhccC
Confidence 56677777664
No 5
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}
Probab=25.27 E-value=66 Score=20.79 Aligned_cols=43 Identities=9% Similarity=-0.048 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHHH
Q 041282 82 SGGFGVAAISVLSWIYRYVTGGHPPGA--DQLEQARMKLASKAREM 125 (144)
Q Consensus 82 sg~~Gltals~lsW~y~y~~g~~p~g~--~~ld~Ar~ri~d~A~~v 125 (144)
++++|++ =..+-+..+|.+.+..-|. ...+..+.|++|...++
T Consensus 19 ~~a~G~a-~~al~~a~~ya~~R~~fG~pl~~~q~vq~~la~~~~~~ 63 (153)
T d1r2ja1 19 WGCVGIL-RACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAE 63 (153)
T ss_dssp HHHHHHH-HHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHhhcccCCccccccchhhhhhhhhccch
Confidence 4444444 3558889999988754442 23467778887765543
No 6
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=23.81 E-value=17 Score=26.40 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhchh
Q 041282 91 SVLSWIYRYVTGGHPPGADQLEQARMKLASKAREMRDRAEQFGQQ 135 (144)
Q Consensus 91 s~lsW~y~y~~g~~p~g~~~ld~Ar~ri~d~A~~v~~kake~G~q 135 (144)
+...=||.|.||..|...| +=.+-..+++.+..+.+.+|+...+
T Consensus 48 ~~m~~m~~f~rg~g~~k~d-LI~aAK~iA~a~~~L~~~Ar~iA~~ 91 (181)
T d1qkra_ 48 LLMAEMSRLVRGGSGNKRA-LIQCAKDIAKASDEVTRLAKEVAKQ 91 (181)
T ss_dssp HHHHHHHHHTTSCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3456688899998776654 4444457888888888888887654
No 7
>d1vr4a1 d.230.5.1 (A:1-103) Hypothetical protein BC1012 {Bacillus cereus [TaxId: 1396]}
Probab=17.85 E-value=22 Score=23.09 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=25.9
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhchhccc
Q 041282 98 RYVTGGHPPGADQLEQARMKLASKAREMRDRAEQFGQQQST 138 (144)
Q Consensus 98 ~y~~g~~p~g~~~ld~Ar~ri~d~A~~v~~kake~G~q~~~ 138 (144)
+.+.|+-..-.+.+++||+...+ +++++|++.|-.++=
T Consensus 41 ~~~gG~~~~y~~~l~~aR~eA~~---rl~~~A~~lGAnAVI 78 (103)
T d1vr4a1 41 DVVGGRAGSYESKLKEARDIAMD---EMKELAKQKGANAIV 78 (103)
T ss_dssp SEEETTTTSSSCTTHHHHHHHHH---HHHHHHHHTTCSEEE
T ss_pred hhhCcchHHHHHHHHHHHHHHHH---HHHHHHHhCCCCEEE
Confidence 33455555667779999976544 478888888876653
No 8
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=17.56 E-value=1.3e+02 Score=19.80 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhh
Q 041282 42 LTMAGTVIALTIATPL 57 (144)
Q Consensus 42 lTL~gtvigL~vaTPL 57 (144)
+++.++++++++++|+
T Consensus 14 is~~~~~i~~ilg~~l 29 (203)
T d3dhwa1 14 MTFVSGFFGFVIGLPV 29 (203)
T ss_dssp HHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666666665
No 9
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.00 E-value=1.1e+02 Score=19.90 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCCCCCC--cHHHHHHHHHHHHHHH
Q 041282 90 ISVLSWIYRYVTGGHPPGAD--QLEQARMKLASKAREM 125 (144)
Q Consensus 90 ls~lsW~y~y~~g~~p~g~~--~ld~Ar~ri~d~A~~v 125 (144)
=..+-+..+|.+.++.-|.. +.+..++|++|...++
T Consensus 24 ~~~l~~a~~ya~~R~~fG~pl~~~q~v~~~la~~~~~~ 61 (154)
T d1siqa1 24 EFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 61 (154)
T ss_dssp HHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 35688999999888765543 3567788888876654
No 10
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=12.68 E-value=18 Score=22.04 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=7.6
Q ss_pred HHHHHHHhcCC
Q 041282 94 SWIYRYVTGGH 104 (144)
Q Consensus 94 sW~y~y~~g~~ 104 (144)
.=+|+||..+.
T Consensus 46 ~~~Y~~F~sK~ 56 (88)
T d1t33a1 46 AAITYYFGSKE 56 (88)
T ss_dssp HHHHHHHSSHH
T ss_pred hhhhccCCCHH
Confidence 45799996543
Done!