BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041283
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis
           Thaliana Protein Containing Duf538 Domain
          Length = 170

 Score =  156 bits (394), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 119/172 (69%), Gaps = 6/172 (3%)

Query: 1   LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLREC 60
             KVG++W+ +KA ++   +  DL+   S+S ++E   K + + +KGK  K LP+LL+E 
Sbjct: 5   FNKVGSYWLGQKANKQFDSVGNDLN---SVSTSIEGGTKWLVNKIKGKMQKPLPELLKEY 61

Query: 61  NIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVE 120
           ++P G+FP + T Y+FDE   KL V +PS C V +KDSSV+++ T V G L +GKL+ VE
Sbjct: 62  DLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVE 121

Query: 121 GMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
           G+K KV++WVKVT ++ +   + K++FTAG+K SR +DAY + R+ +RV+++
Sbjct: 122 GIKTKVMIWVKVTSISTD---ASKVYFTAGMKKSRSRDAYGVQRNGLRVDKF 170


>pdb|3QO4|A Chain A, The Crystal Structure Of Death Receptor 6
          Length = 181

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 44  MLKGKPLKALPDLLRECNIPPGLFPRNITC 73
           M++  P  AL D  REC  PPG+F  N TC
Sbjct: 80  MIEKLPCAALTD--RECTCPPGMFQSNATC 107


>pdb|3U3P|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
           Death Receptor 6 (Dr6)
 pdb|3U3Q|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
           Death Receptor 6 (Dr6)
 pdb|3U3S|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
           Death Receptor 6 (Dr6)
 pdb|3U3T|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
           Death Receptor 6 (Dr6)
 pdb|3U3V|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
           Death Receptor 6 (Dr6)
          Length = 313

 Score = 32.3 bits (72), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 44  MLKGKPLKALPDLLRECNIPPGLFPRNITC 73
           M++  P  AL D  REC  PPG+F  N TC
Sbjct: 76  MIEKLPCAALTD--RECTCPPGMFQSNATC 103


>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
 pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
 pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
 pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
 pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
 pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
          Length = 346

 Score = 27.7 bits (60), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 20/83 (24%)

Query: 8   WVSKKAKEELSHITQDLSICVSL------------SNTLEEKAKLIFSMLKGKPLKALPD 55
           W S+KAK  L   T D  +   L            S+T EE ++L+        L+   D
Sbjct: 224 WSSEKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTYEEDSELL--------LQIRND 275

Query: 56  LLRECNIPPGLFPRNITCYDFDE 78
           +L    I P L P +   Y F E
Sbjct: 276 VLDSLGISPDLLPEDFVRYCFSE 298


>pdb|3UL4|A Chain A, Crystal Structure Of Coh-olpa(cthe_3080)-doc918(cthe_0918)
           Complex: A Novel Type I Cohesin-dockerin Complex From
           Clostridium Thermocellum Attc 27405
          Length = 157

 Score = 27.3 bits (59), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 27/37 (72%)

Query: 119 VEGMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSR 155
           VE  +I  +++++ TG+ +E+ ++D ++FT  ++VS+
Sbjct: 74  VEKDEIIAVLYLEETGLGIEAIRTDGVFFTIVMEVSK 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,812,877
Number of Sequences: 62578
Number of extensions: 177318
Number of successful extensions: 359
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 5
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)