BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041283
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana
GN=At5g01610 PE=1 SV=1
Length = 170
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 120/172 (69%), Gaps = 6/172 (3%)
Query: 1 LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLREC 60
KVG++W+ +KA ++ + DL+ S+S ++E K + + +KGK K LP+LL+E
Sbjct: 5 FNKVGSYWLGQKANKQFDSVGNDLN---SVSTSIEGGTKWLVNKIKGKMQKPLPELLKEY 61
Query: 61 NIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVE 120
++P G+FP + T Y+FDE KL V +PS C V +KDSSV+++ T V G L +GKL+ VE
Sbjct: 62 DLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVE 121
Query: 121 GMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
G+K KV++WVKVT ++ + + K++FTAG+K SR +DAYE+ R+ +RV+++
Sbjct: 122 GIKTKVMIWVKVTSISTD---ASKVYFTAGMKKSRSRDAYEVQRNGLRVDKF 170
>sp|A6L313|MEND_BACV8 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM
1447 / NCTC 11154) GN=menD PE=3 SV=1
Length = 557
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 82 KLIVYLPSPCAVSFKDSSVVRYAT------RVKGTLSRGKLSGVEG 121
KLI LP PCA+ +SS VRYA +V+ +RG ++G+EG
Sbjct: 371 KLIRALPEPCALHLANSSTVRYAQLFTVPPQVEICCNRG-VNGIEG 415
>sp|O75509|TNR21_HUMAN Tumor necrosis factor receptor superfamily member 21 OS=Homo
sapiens GN=TNFRSF21 PE=1 SV=1
Length = 655
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 42 FSMLKGKPLKALPDLLRECNIPPGLFPRNITC 73
+ M++ P AL D REC PPG+F N TC
Sbjct: 115 WPMIEKLPCAALTD--RECTCPPGMFQSNATC 144
>sp|Q2NHT0|SYD_METST Aspartate--tRNA ligase OS=Methanosphaera stadtmanae (strain DSM
3091) GN=aspS PE=3 SV=1
Length = 439
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 3 KVGTFWVSKKAKEELSHITQDLSICVSLS--------NTLEEKAKLIFSMLKGKPLKALP 54
++G + +++ + L H+ + LSI +S NTLEE K I S + K L
Sbjct: 215 EIGQIFRAEE-HDTLRHLNEALSIDAEMSFKSQTDAMNTLEELIKRILSDISTNCQKELS 273
Query: 55 DLLRECNIPPGLFP 68
DL E +IP FP
Sbjct: 274 DLDHELDIPTEPFP 287
>sp|Q0TNG8|Y2399_CLOP1 UPF0758 protein CPF_2399 OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=CPF_2399 PE=3 SV=1
Length = 227
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 57 LRECNIPPGLFPRNITCY---DFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSR 113
+R IP G PR + F + L + L + KDS+VV + R+ S
Sbjct: 5 IRINEIPSGERPREKLLFYGAQFLSNEELLAIILRT----GNKDSNVVELSYRI--IHSV 58
Query: 114 GKLSGV------EGMKIKVLVWVKVTGVAV--ESYKSDKLWFTAGVKVSRPKDAYEMLRD 165
G L+G+ E M++K + K T + E YK K+ A VK+S+P D +++ D
Sbjct: 59 GGLNGLFKASAKELMEVKGVKEAKATQILAMCELYKRFKVSELAQVKISKPSDVAKLVLD 118
Query: 166 AIRV 169
+R+
Sbjct: 119 ELRM 122
>sp|Q8XIH5|Y2144_CLOPE UPF0758 protein CPE2144 OS=Clostridium perfringens (strain 13 /
Type A) GN=CPE2144 PE=3 SV=1
Length = 227
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 57 LRECNIPPGLFPRNITCY---DFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSR 113
+R IP G PR + F + L + L + KDS+VV + R+ S
Sbjct: 5 IRINEIPSGERPREKLLFYGAQFLSNEELLAIILRT----GNKDSNVVELSYRI--IHSV 58
Query: 114 GKLSGV------EGMKIKVLVWVKVTGVAV--ESYKSDKLWFTAGVKVSRPKDAYEMLRD 165
G L+G+ E M++K + K T + E YK K+ VK+S+P D +++ D
Sbjct: 59 GGLNGLFKASAKELMEVKGVKEAKATQILAMCELYKRFKVSELTQVKISKPSDVAKLVLD 118
Query: 166 AIRV 169
+R+
Sbjct: 119 ELRM 122
>sp|Q0SR37|Y2111_CLOPS UPF0758 protein CPR_2111 OS=Clostridium perfringens (strain SM101 /
Type A) GN=CPR_2111 PE=3 SV=1
Length = 227
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 96 KDSSVVRYATRVKGTLSRGKLSGV------EGMKIKVLVWVKVTGVAV--ESYKSDKLWF 147
KDS+VV + R+ S G L+G+ E M++K + K T + E YK K+
Sbjct: 43 KDSNVVELSYRI--IHSVGGLNGLFKASAKELMELKGVKEAKATQILAMCELYKRFKVSE 100
Query: 148 TAGVKVSRPKDAYEMLRDAIRV 169
+K+S+P D +++ D +R+
Sbjct: 101 LTQIKISKPSDVAKLVLDELRM 122
>sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=2
Length = 4998
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 60 CNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKD 97
CN PPGLF N +C + +L L +P AV+ D
Sbjct: 2762 CNCPPGLFLHNASCLPRSQCPCQLHGQLYAPGAVAHLD 2799
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,581,777
Number of Sequences: 539616
Number of extensions: 2310774
Number of successful extensions: 5264
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5259
Number of HSP's gapped (non-prelim): 12
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)