Query 041283
Match_columns 172
No_of_seqs 137 out of 347
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 09:08:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ydu_A AT5G01610; DUF538, stru 100.0 1.1E-75 3.9E-80 475.1 7.1 166 1-172 5-170 (170)
2 1uw7_A NSP9; viral protein, re 46.3 29 0.00098 27.1 4.7 34 71-104 83-118 (143)
3 3ee7_A Replicase polyprotein 1 46.2 24 0.00084 26.8 4.2 34 71-104 53-88 (121)
4 2j97_A Replicase polyprotein 1 32.8 89 0.003 23.3 5.4 35 70-104 48-84 (109)
5 2k8q_A Protein SHQ1; beta-sand 24.4 47 0.0016 25.4 2.7 30 62-91 53-82 (134)
6 3hg9_A PILM; structural genomi 23.0 81 0.0028 23.9 3.8 60 58-121 43-103 (131)
7 3onr_A Protein transport prote 22.9 1.1E+02 0.0036 21.1 4.0 31 128-158 37-67 (72)
8 2yiz_A Dodecin; flavoprotein, 21.1 90 0.0031 21.3 3.3 31 127-157 36-66 (69)
9 2ux9_A Dodecin; flavoprotein; 20.3 96 0.0033 21.1 3.3 31 127-157 36-66 (69)
10 2l32_A Small archaeal modifier 20.2 58 0.002 21.8 2.2 16 50-65 20-35 (74)
No 1
>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1
Probab=100.00 E-value=1.1e-75 Score=475.15 Aligned_cols=166 Identities=45% Similarity=0.872 Sum_probs=164.3
Q ss_pred CccccceeeeehhhHHhhhhccccccceeeeeccccceeeeeecccCCCCCCHHHHHHhCCCCCCCCCCCceEEEEeCCC
Q 041283 1 LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNIPPGLFPRNITCYDFDESR 80 (172)
Q Consensus 1 ~~k~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~~~t~~elL~e~gLP~GLLP~~V~~Y~l~~~t 80 (172)
|||||||||+|||++|+|||+|||| |+|+|||+|||||||||||++++++||||++||||+||||++|++|+||++|
T Consensus 5 ~~k~~~~~~~~~a~~~~~~~~~d~~---~~s~~~~~~~~~~~~~~kg~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~t 81 (170)
T 1ydu_A 5 FNKVGSYWLGQKANKQFDSVGNDLN---SVSTSIEGGTKWLVNKIKGKMQKPLPELLKEYDLPIGIFPGDATNYEFDEET 81 (170)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCSSCCTTTTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTT
T ss_pred hhhhhhhhHhHHHHHhhhhhhhhHh---hhhhhhccchhhhhhhhcccccccHHHHHHHcCCCCCcCCCCCeEEEEECCC
Confidence 7999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCceEEEEcCCeEEEEeeEEEEEEccCeeecccccEEEEEEEEEeeEEEEecCCCCeEEEEeeeccccccccc
Q 041283 81 SKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAY 160 (172)
Q Consensus 81 G~f~V~L~~~C~~~f~~~~~v~Y~t~VtG~l~~GkI~~L~GVk~K~LlWv~VteI~vd~p~~~kI~F~~Gi~ksfp~~aF 160 (172)
|+|||+|+++|+|+|+++|+|+|+++|||+|++|+|++|+|||+|+|+|++|++|.| ++++|+|++|++++||++||
T Consensus 82 G~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~LlWv~V~eI~v---~~~kI~F~vGi~ksfp~saF 158 (170)
T 1ydu_A 82 KKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKVMIWVKVTSIST---DASKVYFTAGMKKSRSRDAY 158 (170)
T ss_dssp CSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEESSSEESCCCBEE---CSSSEECTTSSSSCCCHHHH
T ss_pred cEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEEEEEEeeEEEEEE---eCCEEEEEEcCcccccHHHh
Confidence 999999999999999989999999999999999999999999999999999999999 79999999999999999999
Q ss_pred ccCccceeeccC
Q 041283 161 EMLRDAIRVEQY 172 (172)
Q Consensus 161 e~~~~c~~v~~~ 172 (172)
+.+|+|+.||||
T Consensus 159 e~~~~c~~~~~f 170 (170)
T 1ydu_A 159 GVQRNGLRVDKF 170 (170)
T ss_dssp SSCCCCCCTTCC
T ss_pred cCCcCCcccCCC
Confidence 999999999998
No 2
>1uw7_A NSP9; viral protein, replicase protein, RNA-binding; 2.8A {Sars coronavirus hku-39849} SCOP: b.140.1.1
Probab=46.31 E-value=29 Score=27.09 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=27.2
Q ss_pred ceEEEEeCCCcEEEEEeCCceEEEEcC--CeEEEEe
Q 041283 71 ITCYDFDESRSKLIVYLPSPCAVSFKD--SSVVRYA 104 (172)
Q Consensus 71 V~~Y~l~~~tG~f~V~L~~~C~~~f~~--~~~v~Y~ 104 (172)
...++.|..+|...+.|.-||.|..++ |-.|.|=
T Consensus 83 ~vk~e~d~G~g~v~iELePPckF~v~~~~G~~VkYL 118 (143)
T 1uw7_A 83 WARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYL 118 (143)
T ss_dssp EEEEECTTSSCEEEEEBCCCCEEEECCTTSCEEEEE
T ss_pred EEEEEecCCceEEEEecCCCcEEEEEcCCCCEEEEE
Confidence 446777766779999999999999975 6677774
No 3
>3ee7_A Replicase polyprotein 1A; GXXXG, dimerization, SARS-COV, helix-helix, hydrolase, membr metal-binding, protease, RNA-binding, thiol protease; 2.60A {Sars coronavirus} SCOP: b.140.1.1 PDB: 1qz8_A
Probab=46.25 E-value=24 Score=26.79 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=25.6
Q ss_pred ceEEEEeCCCcEEEEEeCCceEEEEcC--CeEEEEe
Q 041283 71 ITCYDFDESRSKLIVYLPSPCAVSFKD--SSVVRYA 104 (172)
Q Consensus 71 V~~Y~l~~~tG~f~V~L~~~C~~~f~~--~~~v~Y~ 104 (172)
...++.+..||...+.|.-||.|..++ +-.|.|=
T Consensus 53 ~vk~e~d~G~g~v~iELePPckF~v~~~~g~~vkYL 88 (121)
T 3ee7_A 53 WARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYL 88 (121)
T ss_dssp EEEECCC--CEEEEEEBCCCEEEEECCTTSCEEEEE
T ss_pred EEEEEecCCCCeEEEecCCCcEEEEEcCCCCEEEEE
Confidence 346667666699999999999999975 6677774
No 4
>2j97_A Replicase polyprotein 1AB; SSB, zinc, HCOV, membrane, helicase, SARS COV, viral replicase, RNA replication, ATP-binding; 1.75A {Human coronavirus 229E} PDB: 2j98_A 2j98_B
Probab=32.78 E-value=89 Score=23.30 Aligned_cols=35 Identities=14% Similarity=0.422 Sum_probs=25.7
Q ss_pred CceEEEEeCCCcEEEEEeCCceEEEEcC--CeEEEEe
Q 041283 70 NITCYDFDESRSKLIVYLPSPCAVSFKD--SSVVRYA 104 (172)
Q Consensus 70 ~V~~Y~l~~~tG~f~V~L~~~C~~~f~~--~~~v~Y~ 104 (172)
+..=-.+..++|...+.|.-||.|..++ |-+|.|=
T Consensus 48 ~LK~vk~e~d~g~v~iELePPckF~v~~~~G~~vkYL 84 (109)
T 2j97_A 48 GMKYVKWEHDSGVVTVELEPPCRFVIDTPTGPQIKYL 84 (109)
T ss_dssp CEEEEEECCSSSCEEEEBCCCEEEEECCTTSCEEEEE
T ss_pred CceEEEEEccCCEEEEEcCCCcEEEEECCCCCEEEEE
Confidence 3333334455899999999999999975 6677774
No 5
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=24.44 E-value=47 Score=25.40 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=20.4
Q ss_pred CCCCCCCCCceEEEEeCCCcEEEEEeCCce
Q 041283 62 IPPGLFPRNITCYDFDESRSKLIVYLPSPC 91 (172)
Q Consensus 62 LP~GLLP~~V~~Y~l~~~tG~f~V~L~~~C 91 (172)
||.=+.=.+=..-.||.++|.|.|+|++..
T Consensus 53 LP~~V~e~~~~kA~YD~d~~~~~VtLpK~~ 82 (134)
T 2k8q_A 53 FPHELIDDERSTAQYDSKDECINVKVAKLN 82 (134)
T ss_dssp CSSCEECCSSCEEEEETTTTEEEEEEEESS
T ss_pred CCCeeecCCCcceeEeccCCEEEEEEeCCC
Confidence 444333222256788888999999998764
No 6
>3hg9_A PILM; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, P protein, unknown function; 2.40A {Pseudomonas aeruginosa}
Probab=23.02 E-value=81 Score=23.89 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=40.0
Q ss_pred HhCCCCCCCCC-CCceEEEEeCCCcEEEEEeCCceEEEEcCCeEEEEeeEEEEEEccCeeecccc
Q 041283 58 RECNIPPGLFP-RNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEG 121 (172)
Q Consensus 58 ~e~gLP~GLLP-~~V~~Y~l~~~tG~f~V~L~~~C~~~f~~~~~v~Y~t~VtG~l~~GkI~~L~G 121 (172)
.+.|||.+..| .+++.|- +.|.++|++..++.--+..=....=++ .-|..+.|+|-...|
T Consensus 43 a~L~lP~wy~~~~~i~~~I---~~Gr~yV~~~~~~pgL~aaL~~~t~~S-l~G~~~~G~Lv~p~g 103 (131)
T 3hg9_A 43 SALGLPAWFRKPVRLQGYI---AAGTSYAFIASPPAGLAAAVDTGTESD-LVGVRRNGQLVTRRL 103 (131)
T ss_dssp TTTTCCSSCCCCTTEEEEE---SSSCEEEEESSCCTTHHHHHHHHCCCE-EEEEESSSSEEETTT
T ss_pred HHcCCCcccCCCCCeeEEE---ECCEEEEEecCCCchHHHHHHHhcCcc-eeEEeeCCEEECCCC
Confidence 45689999988 8999985 358999999554431111000112234 779999999998887
No 7
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=22.93 E-value=1.1e+02 Score=21.10 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=23.0
Q ss_pred EEEEeeEEEEecCCCCeEEEEeeeccccccc
Q 041283 128 VWVKVTGVAVESYKSDKLWFTAGVKVSRPKD 158 (172)
Q Consensus 128 lWv~VteI~vd~p~~~kI~F~~Gi~ksfp~~ 158 (172)
-|+-|++++....++.-.+|++.+.-+|-.+
T Consensus 37 ~~~eV~e~~~~v~dgkv~~yqv~lKV~F~le 67 (72)
T 3onr_A 37 RVARVIEQDMAVDSAGKITYRIKLEVSFKMR 67 (72)
T ss_dssp CEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred eEEEEEEEEEEEeCCcEEEEEEEEEEEEEEc
Confidence 5777777777766777789998887766554
No 8
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=21.07 E-value=90 Score=21.28 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=22.1
Q ss_pred EEEEEeeEEEEecCCCCeEEEEeeecccccc
Q 041283 127 LVWVKVTGVAVESYKSDKLWFTAGVKVSRPK 157 (172)
Q Consensus 127 LlWv~VteI~vd~p~~~kI~F~~Gi~ksfp~ 157 (172)
+-|+-|++++....++.-.+|++.+.-+|-.
T Consensus 36 i~~~eV~e~~~~v~dgkv~~yqv~lkv~F~l 66 (69)
T 2yiz_A 36 LDWFEVQSIRGHLVDGAVAHFQVTMKVGFRL 66 (69)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CeEEEEEEEEEEEeCCcEEEEEEEEEEEEEE
Confidence 3577788887766566667898888766644
No 9
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=20.30 E-value=96 Score=21.15 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=22.0
Q ss_pred EEEEEeeEEEEecCCCCeEEEEeeecccccc
Q 041283 127 LVWVKVTGVAVESYKSDKLWFTAGVKVSRPK 157 (172)
Q Consensus 127 LlWv~VteI~vd~p~~~kI~F~~Gi~ksfp~ 157 (172)
+-|+-|++++....++.-.+|++.+.-+|-.
T Consensus 36 i~~~eV~e~~~~v~dgkv~~yqv~lkV~F~l 66 (69)
T 2ux9_A 36 LDWFEVKEIRGTIGEAGVKEYQVVLEVGFAL 66 (69)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CeEEEEEEEEEEEeCCcEEEEEEEEEEEEEE
Confidence 3577788877766566667898888766643
No 10
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=20.23 E-value=58 Score=21.79 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.7
Q ss_pred CCCHHHHHHhCCCCCC
Q 041283 50 LKALPDLLRECNIPPG 65 (172)
Q Consensus 50 ~~t~~elL~e~gLP~G 65 (172)
..|+.|||+++|+|.-
T Consensus 20 g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 20 DGTYADLVRAVDLSPH 35 (74)
T ss_dssp TCSHHHHHHTTCCCSS
T ss_pred CCcHHHHHHHcCCCcc
Confidence 4589999999999964
Done!