BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041288
(804 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2F|X Chain X, Crystal Structure Of Sec15 C-Terminal Domain
Length = 325
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 130/298 (43%), Gaps = 19/298 (6%)
Query: 418 IDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSD 477
++ L ++L RD Y+E+LL E L ++F M+++ EY + F +
Sbjct: 2 VNILWELLHNMRDHYNEVLLQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQ 61
Query: 478 IVPA-FPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGHL-----EFFDVVKKYLDRLLG 531
+ A FP PFS VP+ + F+ + M + L E +V+K + LL
Sbjct: 62 LENAPFPKKFPFSRMVPEVYHQAKEFM---YACMKFAEELTLSPNEVAAMVRKAANLLLT 118
Query: 532 EVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMAERSRRQF 591
L + ++Q +Q+ + LE+A F ++ ERS Q
Sbjct: 119 RSFSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVCHMTN-----TERSVSQT 173
Query: 592 P---LTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLV 648
P AR AE+ + + +K+D F L +W+ EP + ++ ++I YL++
Sbjct: 174 PSAMFHVARQDAEKQVGLRICSKIDEFFEL-SAYDWLLVEPPGIASAFITDMISYLKSTF 232
Query: 649 STAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFA 706
+ LP + + + HI+E I +Y + VK+ + A+ I++D+ E FA
Sbjct: 233 DSFAFKLP-HIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFA 289
>pdb|2AC1|A Chain A, Crystal Structure Of A Cell-Wall Invertase From
Arabidopsis Thaliana
Length = 541
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 123 SYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLS-----------NNNFYMALKCTD 171
S+ + Q I +++++KS + LM L S+ + N+N Y+ L C+D
Sbjct: 391 SWTDPQLICSKMNVSVKSGLGPFGLMVLASKNLEEYTSVYFRIFKARQNSNKYVVLMCSD 450
Query: 172 ALES---EFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAI 228
S E +DK + + S+R+ I+ V + FG + SR +LAI
Sbjct: 451 QSRSSLKEDNDKTTYGAFVDINPHQPLSLRALIDHSVVESFGG-KGRACITSRVYPKLAI 509
Query: 229 GQAS 232
G++S
Sbjct: 510 GKSS 513
>pdb|2OXB|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203q) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 123 SYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLS-----------NNNFYMALKCTD 171
S+ + Q I +++++KS + LM L S+ + N+N Y+ L C+D
Sbjct: 387 SWTDPQLICSKMNVSVKSGLGPFGLMVLASKNLEEYTSVYFRIFKARQNSNKYVVLMCSD 446
Query: 172 ALES---EFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAI 228
S E +DK + + S+R+ I+ V + FG + SR +LAI
Sbjct: 447 QSRSSLKEDNDKTTYGAFVDINPHQPLSLRALIDHSVVESFGG-KGRACITSRVYPKLAI 505
Query: 229 GQAS 232
G++S
Sbjct: 506 GKSS 509
>pdb|2XQR|A Chain A, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|C Chain C, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|E Chain E, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|G Chain G, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|I Chain I, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|K Chain K, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
Length = 537
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 123 SYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLS-----------NNNFYMALKCTD 171
S+ + Q I +++++KS + LM L S+ + N+N Y+ L C+D
Sbjct: 387 SWTDPQLICSKMNVSVKSGLGPFGLMVLASKNLEEYTSVYFRIFKARQNSNKYVVLMCSD 446
Query: 172 ALES---EFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAI 228
S E +DK + + S+R+ I+ V + FG + SR +LAI
Sbjct: 447 QSRSSLKEDNDKTTYGAFVDINPHQPLSLRALIDHSVVESFGG-KGRACITSRVYPKLAI 505
Query: 229 GQAS 232
G++S
Sbjct: 506 GKSS 509
>pdb|2QQV|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 123 SYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLS-----------NNNFYMALKCTD 171
S+ + Q I +++++KS + LM L S+ + N+N Y+ L C+D
Sbjct: 387 SWTDPQLICSKMNVSVKSGLGPFGLMVLASKNLEEYTSVYFRIFKARQNSNKYVVLMCSD 446
Query: 172 ALES---EFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAI 228
S E +DK + + S+R+ I+ V + FG + SR +LAI
Sbjct: 447 QSRSSLKEDNDKTTYGAFVDINPHQPLSLRALIDHSVVESFGG-KGRACITSRVYPKLAI 505
Query: 229 GQAS 232
G++S
Sbjct: 506 GKSS 509
>pdb|2QQU|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D239a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 535
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 123 SYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLS-----------NNNFYMALKCTD 171
S+ + Q I +++++KS + LM L S+ + N+N Y+ L C+D
Sbjct: 387 SWTDPQLICSKMNVSVKSGLGPFGLMVLASKNLEEYTSVYFRIFKARQNSNKYVVLMCSD 446
Query: 172 ALES---EFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAI 228
S E +DK + + S+R+ I+ V + FG + SR +LAI
Sbjct: 447 QSRSSLKEDNDKTTYGAFVDINPHQPLSLRALIDHSVVESFGG-KGRACITSRVYPKLAI 505
Query: 229 GQAS 232
G++S
Sbjct: 506 GKSS 509
>pdb|2QQW|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D23a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 123 SYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLS-----------NNNFYMALKCTD 171
S+ + Q I +++++KS + LM L S+ + N+N Y+ L C+D
Sbjct: 387 SWTDPQLICSKMNVSVKSGLGPFGLMVLASKNLEEYTSVYFRIFKARQNSNKYVVLMCSD 446
Query: 172 ALES---EFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAI 228
S E +DK + + S+R+ I+ V + FG + SR +LAI
Sbjct: 447 QSRSSLKEDNDKTTYGAFVDINPHQPLSLRALIDHSVVESFGG-KGRACITSRVYPKLAI 505
Query: 229 GQAS 232
G++S
Sbjct: 506 GKSS 509
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,336,794
Number of Sequences: 62578
Number of extensions: 839383
Number of successful extensions: 2350
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2348
Number of HSP's gapped (non-prelim): 12
length of query: 804
length of database: 14,973,337
effective HSP length: 107
effective length of query: 697
effective length of database: 8,277,491
effective search space: 5769411227
effective search space used: 5769411227
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)