Query 041288
Match_columns 804
No_of_seqs 138 out of 219
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:41:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2176 Exocyst complex, subun 100.0 6E-166 1E-170 1401.3 76.0 779 19-804 12-797 (800)
2 PF04091 Sec15: Exocyst comple 100.0 7.8E-77 1.7E-81 644.1 21.7 303 463-769 1-311 (311)
3 PF10191 COG7: Golgi complex c 99.4 8.8E-07 1.9E-11 107.9 62.0 596 53-769 36-765 (766)
4 PF06248 Zw10: Centromere/kine 98.5 0.0041 9E-08 74.4 43.8 510 52-621 11-578 (593)
5 PF10475 DUF2450: Protein of u 98.4 3.3E-05 7.1E-10 84.1 20.7 159 54-213 34-192 (291)
6 PF04437 RINT1_TIP1: RINT-1 / 98.3 0.0014 3.1E-08 76.7 32.2 328 372-738 66-448 (494)
7 PF15469 Sec5: Exocyst complex 98.2 4.4E-05 9.5E-10 77.3 16.7 145 69-213 2-152 (182)
8 PF04048 Sec8_exocyst: Sec8 ex 98.0 0.00016 3.4E-09 70.5 14.2 105 52-156 37-141 (142)
9 PF10392 COG5: Golgi transport 97.9 0.00047 1E-08 66.3 15.4 104 51-154 29-132 (132)
10 PF06148 COG2: COG (conserved 97.6 3.1E-05 6.7E-10 74.5 2.8 111 48-158 23-133 (133)
11 KOG2347 Sec5 subunit of exocys 97.3 0.74 1.6E-05 55.8 34.1 580 52-709 188-878 (934)
12 KOG3691 Exocyst complex subuni 97.1 0.065 1.4E-06 64.3 22.6 143 38-181 30-179 (982)
13 KOG2307 Low density lipoprotei 97.1 0.87 1.9E-05 52.6 43.2 530 46-679 41-617 (705)
14 PF08700 Vps51: Vps51/Vps67; 97.0 0.0057 1.2E-07 54.1 9.6 74 41-114 9-85 (87)
15 PF10474 DUF2451: Protein of u 96.8 0.065 1.4E-06 56.6 17.7 99 611-711 68-171 (234)
16 KOG0412 Golgi transport comple 96.8 1.9 4.1E-05 51.4 48.5 207 549-768 538-768 (773)
17 PF04124 Dor1: Dor1-like famil 96.7 0.13 2.9E-06 57.3 19.6 115 58-175 17-134 (338)
18 PF04100 Vps53_N: Vps53-like, 96.6 0.1 2.3E-06 59.1 18.6 159 52-212 22-184 (383)
19 PF07393 Sec10: Exocyst comple 96.2 5 0.00011 49.4 51.6 161 595-769 527-700 (710)
20 PF06046 Sec6: Exocyst complex 95.4 6.7 0.00015 46.8 27.0 335 390-766 160-527 (566)
21 KOG2176 Exocyst complex, subun 95.3 1.7 3.6E-05 52.5 20.7 283 96-415 82-383 (800)
22 KOG2033 Low density lipoprotei 95.0 11 0.00023 45.1 35.2 137 53-202 22-167 (863)
23 PF01843 DIL: DIL domain; Int 94.5 0.13 2.9E-06 47.2 7.3 101 664-772 3-103 (105)
24 PF12022 DUF3510: Domain of un 91.8 1.2 2.6E-05 42.5 9.4 72 608-679 8-79 (125)
25 KOG2211 Predicted Golgi transp 90.3 49 0.0011 39.8 39.3 144 30-173 50-195 (797)
26 PF06419 COG6: Conserved oligo 84.6 1.1E+02 0.0023 37.4 23.0 265 367-677 158-444 (618)
27 PF14923 CCDC142: Coiled-coil 77.0 37 0.0008 39.3 13.3 84 623-708 261-348 (450)
28 PRK00794 flbT flagellar biosyn 74.3 7.1 0.00015 37.7 5.7 28 146-173 92-119 (132)
29 PRK12791 flbT flagellar biosyn 70.4 6.7 0.00015 37.8 4.6 27 147-173 90-116 (131)
30 PF07378 FlbT: Flagellar prote 68.9 13 0.00027 35.7 6.1 30 144-173 88-117 (126)
31 KOG2346 Uncharacterized conser 65.9 15 0.00032 42.4 6.8 112 60-171 58-169 (636)
32 PF10158 LOH1CR12: Tumour supp 57.8 1.9E+02 0.004 28.0 13.3 99 41-148 3-103 (131)
33 COG0497 RecN ATPase involved i 57.5 4.1E+02 0.0089 31.9 24.4 169 52-222 137-336 (557)
34 PF08651 DASH_Duo1: DASH compl 53.3 1.1E+02 0.0023 26.9 8.6 64 98-171 12-75 (78)
35 TIGR00634 recN DNA repair prot 49.7 5.3E+02 0.012 30.9 22.3 170 52-225 142-343 (563)
36 KOG0994 Extracellular matrix g 46.0 6.6E+02 0.014 32.8 16.3 154 51-205 1580-1751(1758)
37 TIGR00606 rad50 rad50. This fa 44.3 9.3E+02 0.02 32.2 23.6 118 54-177 694-815 (1311)
38 PRK10869 recombination and rep 42.2 6.8E+02 0.015 30.0 22.9 170 52-224 138-337 (553)
39 PF10392 COG5: Golgi transport 42.2 3.2E+02 0.0068 26.2 14.3 104 56-159 27-130 (132)
40 PF08654 DASH_Dad2: DASH compl 39.6 2.4E+02 0.0053 26.1 9.1 65 60-139 2-66 (103)
41 PF01031 Dynamin_M: Dynamin ce 38.8 5.4E+02 0.012 27.9 15.5 47 481-532 185-231 (295)
42 PF04728 LPP: Lipoprotein leuc 38.3 2.3E+02 0.0049 23.4 8.5 50 87-136 3-52 (56)
43 PRK09973 putative outer membra 36.2 2.2E+02 0.0048 25.4 7.9 56 88-170 25-80 (85)
44 PF10540 Membr_traf_MHD: Munc1 35.6 3.7E+02 0.008 26.0 10.2 97 635-735 2-126 (137)
45 PRK09973 putative outer membra 35.4 3.1E+02 0.0066 24.6 8.6 53 88-152 32-84 (85)
46 PF04156 IncA: IncA protein; 34.7 4.9E+02 0.011 26.1 13.4 18 57-74 97-114 (191)
47 COG5443 FlbT Flagellar biosynt 34.4 42 0.00092 32.1 3.3 27 147-173 94-120 (148)
48 PF07072 DUF1342: Protein of u 34.3 94 0.002 32.5 6.2 141 54-225 4-153 (211)
49 PF10473 CENP-F_leu_zip: Leuci 32.4 4.9E+02 0.011 25.5 10.5 69 81-149 4-72 (140)
50 KOG3647 Predicted coiled-coil 31.2 6.6E+02 0.014 27.2 11.7 100 96-203 121-225 (338)
51 TIGR03185 DNA_S_dndD DNA sulfu 27.7 1.1E+03 0.025 28.6 15.1 66 79-144 390-457 (650)
52 PRK10803 tol-pal system protei 27.4 5.7E+02 0.012 27.5 11.1 108 67-177 41-173 (263)
53 KOG1937 Uncharacterized conser 27.2 1.1E+03 0.023 27.7 17.8 31 88-118 404-437 (521)
54 KOG2069 Golgi transport comple 26.9 1.2E+03 0.025 28.1 21.6 107 60-169 43-152 (581)
55 PRK05287 hypothetical protein; 26.9 2.6E+02 0.0056 30.1 8.1 100 52-169 20-123 (250)
56 KOG3691 Exocyst complex subuni 26.7 9.7E+02 0.021 30.3 13.5 131 624-766 817-948 (982)
57 KOG0250 DNA repair protein RAD 25.6 1.6E+03 0.034 29.2 15.8 128 89-219 403-532 (1074)
58 PF07464 ApoLp-III: Apolipopho 25.3 3.4E+02 0.0073 27.0 8.1 101 35-145 23-130 (155)
59 KOG1126 DNA-binding cell divis 24.9 2.4E+02 0.0051 34.2 8.0 75 129-203 534-613 (638)
60 PHA02265 hypothetical protein 24.3 78 0.0017 28.0 2.9 25 289-313 23-47 (103)
61 PF04097 Nic96: Nup93/Nic96; 23.4 1.4E+02 0.0031 36.2 6.1 60 115-174 472-532 (613)
62 KOG3684 Ca2+-activated K+ chan 22.2 5E+02 0.011 30.3 9.5 66 76-145 392-457 (489)
63 PF15469 Sec5: Exocyst complex 22.1 7.6E+02 0.016 24.6 10.3 46 601-646 122-167 (182)
64 PF14276 DUF4363: Domain of un 22.1 4E+02 0.0087 24.8 7.7 63 141-203 22-90 (121)
65 PF00621 RhoGEF: RhoGEF domain 22.1 7E+02 0.015 23.9 11.1 93 53-146 9-106 (180)
66 PF14643 DUF4455: Domain of un 21.9 1.3E+03 0.029 27.0 17.1 51 40-93 310-360 (473)
67 PF07560 DUF1539: Domain of Un 21.7 6.5E+02 0.014 24.2 8.8 45 675-732 72-116 (126)
68 COG0598 CorA Mg2+ and Co2+ tra 21.0 1.1E+03 0.025 25.9 13.8 125 56-180 148-275 (322)
69 PF01544 CorA: CorA-like Mg2+ 20.7 1E+03 0.022 25.1 12.1 96 84-179 148-246 (292)
No 1
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-166 Score=1401.34 Aligned_cols=779 Identities=41% Similarity=0.611 Sum_probs=723.7
Q ss_pred CChhhhhhHHHhhcccCCCCchhHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHH
Q 041288 19 GDSADKLDQLLLSSAIGNGEDLGPFVRKAFASGKPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDS 98 (804)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~d~l~piik~~~~~~~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~ 98 (804)
+|...-..-+.+...+.++|.|||++|.+++.|+++.|+++|+++|+.||.|||+||+.|||||++||+||++||.++.+
T Consensus 12 ~d~~~~~eril~~~estDtd~~gP~lRs~~d~~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~ 91 (800)
T KOG2176|consen 12 LDTAEEHERILLEIESTDTDDWGPTLRSVYDGNQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQK 91 (800)
T ss_pred CcchHHHHHHHHHHhccchhhhhhHHHHHHccCCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 55555666777888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhhHHHHHhhhc
Q 041288 99 LKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFS 178 (804)
Q Consensus 99 L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALktLd~Le~~~L 178 (804)
|++++++.|..||++|++|+.++++|+++|.+++||++|+++++.|+||||+|+||+++|++|+||+||||||.||++||
T Consensus 92 Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~~yL 171 (800)
T KOG2176|consen 92 LKSQVSDTNRRLQESGKELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLESLEKVYL 171 (800)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccc
Q 041288 179 DKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASSARQREED-LRIKQRQAEEQSRLSLR 257 (804)
Q Consensus 179 ~~v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l~~WL~~IR~~s~~IG~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 257 (804)
|.++.|.|+.+|+.+||.+|+.|+++|++++++||++||++|++||+.|++++++.|+||++ ...+++..+.++..++.
T Consensus 172 ~~~~~~~~~~~i~~~Ip~ik~~i~~~~~~~~~e~L~~irk~s~~iGq~ai~~~~~ar~r~~~~~~~~~~~~e~~~~~~l~ 251 (800)
T KOG2176|consen 172 PRVSNFRFLIVIQNRIPFIKEVIKSKSMSDFREWLENIRKKSPKIGQTAIQQAKEARQRWEEEKFNKQIEAEEQSTGSLA 251 (800)
T ss_pred HhcccchhhHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhccchHHHhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999984 44444455555566665
Q ss_pred ccccccccccccccCCCCCC--CCCCCCCCCccccCchhHHHHHHHHHhcCchHHHHHHHHHhhHhhhhccccCCCCcch
Q 041288 258 DCVYALQEEDDDENGLSNGV--ESDSNGGAGLLGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPF 335 (804)
Q Consensus 258 ~~~~~l~~~~~~e~~l~~~~--~~~~~~~~~~~~iDf~Ply~cihI~~~Lg~~e~F~~yY~~~Rr~Q~~l~l~~~~~~~~ 335 (804)
...+.+..+++++.+ +..+ +.+..+ -+.+.|||+|+|||+|||..||.++.|+.||++||+.|+.+++++|.+...
T Consensus 252 ~l~~~~~~e~d~~~~-s~~~~~~~~~~~-~~~~~~d~~plyr~~hi~~~Lg~~~~f~~~y~~nr~~q~~~~~q~~~t~~~ 329 (800)
T KOG2176|consen 252 KLAYGLEFEEDDEHD-SIMIFQDLNELS-GAIDKFDFEPLYRCLHIHSVLGLRERFRAYYQMNRRLQADLVLQPPFTQLD 329 (800)
T ss_pred HHhcccccccccccc-cchhccCccccc-chheeecccHHHHHHHHHHHHhhHHHHHHHHHHhHHHhhhcccCCCcchhh
Confidence 556555555444322 1000 111111 167899999999999999999999999999999999999999999876555
Q ss_pred -HHHHHHHHHHhhhHHHhhHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHhhhC
Q 041288 336 -LESHQTFFAQIAGFFIVEDRILRTGGGLISKIEVENLWDAAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRY 414 (804)
Q Consensus 336 -~~~l~~yl~~I~GFFivE~~vl~tt~~l~s~~~vdelWe~~~~kl~~~l~~~l~~~~~~~~ll~iK~~i~lf~~tl~~y 414 (804)
+++|++|+.+|+||||||+||++|+++++|.++|+++|+++|+|+++.|+.++++|++|+++|++||+|+|++.||++|
T Consensus 330 ~l~~~~ty~~~i~Gffived~il~t~~~~~s~~~ve~lW~~~i~k~v~~L~~~~s~~~t~~~ll~lKd~i~L~~~tl~~y 409 (800)
T KOG2176|consen 330 SLEGYQTYFNQIAGFFIVEDHILRTTGGFLSYNEVEELWDTAISKLVATLSYQSSRCQTPNHLLKLKDLIVLLGATLENY 409 (800)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHhHHHHHHHHHHHc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccCCHHHHhchhccccCCCCCCCC-CCCcccCCCCchH
Q 041288 415 GYPIDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVP-AFPYVAPFSSTVP 493 (804)
Q Consensus 415 gy~v~~L~~~L~~l~d~Y~~lL~~~~~~~f~~il~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~~-~fP~~lPFS~~vP 493 (804)
||+|+||+++|.++||+|+++|+++|++.|++++++|+|+||.|+++++|++++..||+++.+..+ |||+++|||+|||
T Consensus 410 g~~V~~l~~~l~~~rdky~e~LL~~~~~~f~e~l~~D~f~pm~V~~e~~Ye~~v~~fp~~~~e~~~~~Fp~~~pFS~mvP 489 (800)
T KOG2176|consen 410 GFNVEPLYDLLVEIRDKYHEVLLRKWRKIFREALEKDDFMPMVVKKEEEYEKNVLSFPFQNEELEPLPFPKTFPFSPMVP 489 (800)
T ss_pred CCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhcccccccccHHHHhhhhhccccccccccCCCCcccCCCCcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999888777 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--cccHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhHHHHHHHhHHHHHHHHHHHHH
Q 041288 494 DCCRIVRSFIEDSVSFMSYGG--HLEFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFR 571 (804)
Q Consensus 494 ~~c~~ir~fi~~~~~f~~~~~--~~~~d~~v~ks~d~lL~~~v~~~L~~~i~~~~~~l~qi~Qi~iNl~~le~ac~~~e~ 571 (804)
+||+++|+||+.|++|+++++ .+++...+++.++.++.+.++ +...+..+++|++|++||++|+.+||.||++|..
T Consensus 490 ~~c~~~k~fi~~~v~fls~~~l~~~e~~~~~~~~~~l~l~rs~v--l~~~~~~~~~~lsq~~QI~~n~~~fe~a~~~f~~ 567 (800)
T KOG2176|consen 490 DVCTQAKKFIYACVKFLSDLVLLETEVLNKIRKDTNLLLTRSLV--LSLTSSLPSLNLSQAMQIAANLDYFEIAADFFLE 567 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHhcccccHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999754 567778888889989988888 4444455778999999999999999999999999
Q ss_pred HHHHHcCCCchhhhcccccccHHHHHHHHHHHHHHHHHhHHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHH
Q 041288 572 HAAQLSGIPLRMAERSRRQFPLTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTA 651 (804)
Q Consensus 572 ~~~~~~g~~~~~~~~~~~~~~f~~~r~~Ae~~I~~lv~~KIdd~le~~~~yDW~~~~~~~~~s~yi~dli~fL~~~f~s~ 651 (804)
++++.+|++.+..+++.++..|..+|+.||..++.++++||||||++ .+|||+.+++|++||+||.||+.||++||.++
T Consensus 568 ~a~~~~~~~~~~~e~~~~s~~l~~sr~~Ae~~l~~~i~~Kid~f~~l-~~~dW~t~e~pq~~~~~i~e~~~yLet~~~s~ 646 (800)
T KOG2176|consen 568 FACHLNGIPNRDAERPSSSTKLLASRKLAETELIELIKLKIDDFLEL-IEYDWTTTEVPQGPSEYINEMLIYLETMFSSA 646 (800)
T ss_pred HHHHccCCccccccccccchhhhhhhhhHHHHHHHHHhhhhHHHHHH-hhccccccccCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888999999999999999999999995 59999999999999999999999999999999
Q ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHhcccCCcccccCHHHHHhHHHHHHHHHHHhhhhCCCCCCCChhhHHHHHHHHHHH
Q 041288 652 QQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQL 731 (804)
Q Consensus 652 ~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~le~fa~~~~~~~~~~~~~~L~~~F~ELrQl 731 (804)
+++||.++++++|+++|+||+++++++|+|+++|+||++||.||++||.|||+||++- |++|. ..+.+..+|.|+|||
T Consensus 647 ~q~LP~~v~~~v~~~~~~his~~iv~llldd~ik~is~~Ai~~fnlDv~~lEsfa~~~-p~~~~-~~~~~~~~fielrQl 724 (800)
T KOG2176|consen 647 LQILPYKVAQLVCLRELDHISTSIVGLLLDDSIKQISMGAITNFNLDVNYLESFAASP-PVPPN-QEGVLAKAFIELRQL 724 (800)
T ss_pred HhhCcHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHccchhHHHHHHhccCC-CCCCc-ccchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999994 77777 678899999999999
Q ss_pred HHhhhcCCcccccchhhhcccCCCCChhhHHHHHHhhcCCCCCcccccCCCCCCCChhhhhHHHHHHHhhhCC
Q 041288 732 VNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKLRDPSDRLFGTFGSRGAKQNPKKKSLDALIKRLRDVS 804 (804)
Q Consensus 732 idLl~s~~~e~y~~~~~R~~kY~~v~~~~~~~lLeK~~~~~~~~f~~~~~~~~~~~~rkk~~~~v~k~l~~~~ 804 (804)
+|||++++|++|++|++|+++|.||+|.+|+++|||+++.++++||.+.++..++.+++|++|+|+||||.++
T Consensus 725 inLL~~~~~e~y~~~~~r~rsY~rl~~~~a~t~lEK~~d~~d~~~~~~~~~~n~~~~k~k~id~~~krlk~~~ 797 (800)
T KOG2176|consen 725 INLLLLSDWETYLNDYGRERSYNRLQPAKAATLLEKFKDSSDGINGLLCSRKNDRSAKKKLIDTVKKRLKEFF 797 (800)
T ss_pred HHHHHhcCHHHhhCchhhhhhhhccCHHHHHHHHHHHhcccccCcchhcccccccchhhhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988888887889999999999999874
No 2
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=100.00 E-value=7.8e-77 Score=644.06 Aligned_cols=303 Identities=37% Similarity=0.580 Sum_probs=205.2
Q ss_pred HHhchhccccCCCC----CCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHhhcC--CcccHHHHHHHHHHHHHHHHHHH
Q 041288 463 EYSMNVLSFQIQTS----DIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYG--GHLEFFDVVKKYLDRLLGEVLDE 536 (804)
Q Consensus 463 ey~~~v~~~~~~~~----~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~~~f~~~~--~~~~~d~~v~ks~d~lL~~~v~~ 536 (804)
||++++..||++++ ...++||++||||+|||+||++||+||++|+.|+++. +++++|++|||++|+||+++||+
T Consensus 1 ey~~v~~~~~~~~~~~~~~~~~~fP~~lPFS~~vp~~c~~ir~fi~~~~~F~~~~~~~~~eid~~v~ks~d~lL~~~l~~ 80 (311)
T PF04091_consen 1 EYDKVLSVCWYKPDEDAELEQEPFPKKLPFSQMVPMCCRQIRSFIEKCYKFSDDLYQSSTEIDDIVRKSLDRLLTRVLNG 80 (311)
T ss_dssp HHHHHHTTS------------------SSSBTHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCcccccccccccCCCCeeCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 79999888888632 2345899999999999999999999999999999964 46899999999999999999999
Q ss_pred HHHHHhhccCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCchhh--hcccccccHHHHHHHHHHHHHHHHHhHHHH
Q 041288 537 ALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMA--ERSRRQFPLTKARDAAEEMLSGLLKNKVDG 614 (804)
Q Consensus 537 ~L~~~i~~~~~~l~qi~Qi~iNl~~le~ac~~~e~~~~~~~g~~~~~~--~~~~~~~~f~~~r~~Ae~~I~~lv~~KIdd 614 (804)
+|.++|+++ ++++|+|||+||++|||.||++|+.++++++|++.... .++.++.+|+++|+.||++|+++|++||||
T Consensus 81 ~L~~~i~~~-~~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~~~~~~~~~~~~l~a~~~f~~~r~~Ae~~I~~lv~~KIDe 159 (311)
T PF04091_consen 81 SLKSKIRSS-LNLSQIVQIVINLEYLEKACKELEEFLSSLRGIPQSAGGHIRLKATKMFKDARKAAEKRIFELVNSKIDE 159 (311)
T ss_dssp HHHHHHT-T-S-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHT----------------S---TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCccchHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 89999999999999999999999999999998765422 356788999999999999999999999999
Q ss_pred HHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhcccCCcccccCHHHHHh
Q 041288 615 FMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMG 694 (804)
Q Consensus 615 ~le~~~~yDW~~~~~~~~~s~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n 694 (804)
||+ +++|||+|++++++||+||.||+.||+++|+|++.+||+++++++||+||+|||++||++|++++||+||++||+|
T Consensus 160 ~le-la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~ 238 (311)
T PF04091_consen 160 FLE-LAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQN 238 (311)
T ss_dssp HHT-T--TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHH
T ss_pred HHh-hcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHH
Confidence 998 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCCCCCCChhhHHHHHHHHHHHHHhhhcCCcccccchhhhcccCCCCChhhHHHHHHhhc
Q 041288 695 IDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKLR 769 (804)
Q Consensus 695 ~~~Dv~~le~fa~~~~~~~~~~~~~~L~~~F~ELrQlidLl~s~~~e~y~~~~~R~~kY~~v~~~~~~~lLeK~~ 769 (804)
|++||+|||+||+++ |++|. +.++|+++|+||||+||||++|||++|+||.+|++||+||+|++|+.|||||+
T Consensus 239 ~~~Dv~~lE~f~~~~-~~~~~-~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 239 FDLDVKYLESFADSL-PVPGN-NIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp HHHHHHHHHHHHTT--SSSS---SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHHhC-cCccc-ccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 999999999999998 77777 68899999999999999999999999999999999999999999999999986
No 3
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=99.38 E-value=8.8e-07 Score=107.92 Aligned_cols=596 Identities=16% Similarity=0.222 Sum_probs=357.2
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 041288 53 PETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISK 132 (804)
Q Consensus 53 ~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~ 132 (804)
...+.-+|+-++.+-...||+.+..--+..=..+.++..||.++..|++++..+.+.+++.-.+=....+.|.+..+|+.
T Consensus 36 ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~ 115 (766)
T PF10191_consen 36 LSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKS 115 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Confidence 44677889999999999999999888888889999999999999999999999999988775555566778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhhHHHHHhh--hcCCCCchHHHHHHHhhchhHHHHHHHHHHHHHH
Q 041288 133 NIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESE--FSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFG 210 (804)
Q Consensus 133 NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALktLd~Le~~--~L~~v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l~ 210 (804)
++..|.++|+..-..-.+...|.+.+..+.|=.+=..|.++++. -|..+|.|.-.+...+ .++..++..+
T Consensus 116 rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~le---~l~nrLEa~v----- 187 (766)
T PF10191_consen 116 RMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQDVPDYEERRQQLE---ALKNRLEALV----- 187 (766)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHH---HHHHHHHHHh-----
Confidence 99999999999999999999999999998887766666666552 2344454433221100 1111111000
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCCCCCCCCCCCCCcccc
Q 041288 211 DWLVEIRVVSRNLGQLAIGQASSARQREEDLRIKQRQAEEQSRLSLRDCVYALQEEDDDENGLSNGVESDSNGGAGLLGF 290 (804)
Q Consensus 211 ~WL~~IR~~s~~IG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~l~~~~~~~~~~~~~~~~i 290 (804)
++.+.. + -..=
T Consensus 188 ---------sp~Lv~----------------------------------a--------------------------l~~~ 198 (766)
T PF10191_consen 188 ---------SPQLVQ----------------------------------A--------------------------LNSR 198 (766)
T ss_pred ---------hHHHHH----------------------------------H--------------------------HHhc
Confidence 000000 0 0001
Q ss_pred CchhHHHHHHHHHhcCchHHHHHHHHHhhHhhhhccc---cCC-CCcchHHHHHHHHHHhhhHHHhhHHHHhhcCCCcch
Q 041288 291 DLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDF---QVS-SMTPFLESHQTFFAQIAGFFIVEDRILRTGGGLISK 366 (804)
Q Consensus 291 Df~Ply~cihI~~~Lg~~e~F~~yY~~~Rr~Q~~l~l---~~~-~~~~~~~~l~~yl~~I~GFFivE~~vl~tt~~l~s~ 366 (804)
|....-.+..||..+|..++|+.||.+.|+.++...- ... ...++.+.|..|+..+++..--|-.-..+.++=-..
T Consensus 199 ~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~~~~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~~ 278 (766)
T PF10191_consen 199 DVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQSDQSQSFAEWLPSFYDELLSLLHQELKWCSQVFPDESP 278 (766)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 2356666778999999999999999999999763321 111 124677889999999999988887765554432222
Q ss_pred hhHHHHHHHHHHHHHH----HHHHhhccCCC---hHHHHHHHHHHHHHHHHhhh----C--CCCchHHHHHHHHHHHHHH
Q 041288 367 IEVENLWDAAVSKMCS----VLEDQFSRMQT---ANHLLLIKDYVSLLGVTLRR----Y--GYPIDALLDVLSKHRDKYH 433 (804)
Q Consensus 367 ~~vdelWe~~~~kl~~----~l~~~l~~~~~---~~~ll~iK~~i~lf~~tl~~----y--gy~v~~L~~~L~~l~d~Y~ 433 (804)
-+-.++-..+..+.| .+...+..+.. ...++.+.+...-|+..++. . ..+...+.+++..+++-|.
T Consensus 279 -~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~~l~~~~~l~~al~~PF~ 357 (766)
T PF10191_consen 279 -VLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSSLPGESNLSKVEELLQALFEPFK 357 (766)
T ss_pred -HHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 445555555555554 44555544433 37788888888888885553 2 2344566677777777776
Q ss_pred HHHHHHHHHHHHHHhhhCCCcccccCCHHHHhchhccccCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHhhcC
Q 041288 434 ELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYG 513 (804)
Q Consensus 434 ~lL~~~~~~~f~~il~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~~~f~~~~ 513 (804)
.... +|. ++++..-...-.++..+..+--+ .+=-.+..+|++......=++.|..|-.+.
T Consensus 358 ~~q~-~Yg-~lE~~~L~~~L~~l~~~~~~~~d------------------~v~~L~~s~~k~f~lae~Av~RC~~fT~G~ 417 (766)
T PF10191_consen 358 PYQQ-RYG-ELERRFLSAQLSALDLESAELSD------------------AVRRLEESIPKLFGLAEEAVDRCIAFTGGY 417 (766)
T ss_pred HHHH-HHH-HHHHHHHHHHHHhcccCCCcHHH------------------HHHHHHHhHHHHHHHHHHHHHHHHHHhCCc
Confidence 6533 221 11111111111122222110000 011235677888888888999999998632
Q ss_pred C----cccHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-----------hhHHHHHHHhHHHHHHHHHHHHHHHH----
Q 041288 514 G----HLEFFDVVKKYLDRLLGEVLDEALLKLINSSVHG-----------VSQAMQVAANMAVLERACDFFFRHAA---- 574 (804)
Q Consensus 514 ~----~~~~d~~v~ks~d~lL~~~v~~~L~~~i~~~~~~-----------l~qi~Qi~iNl~~le~ac~~~e~~~~---- 574 (804)
+ ..-++..+.++++. ++.++ ..|+........+ +.-..|++.-+.-|...|..||..+.
T Consensus 418 ~~~~Ll~Ald~~~~~y~~~-~~~~l-~~lr~~~~~~~~~~~~~~~eDWs~fQ~aL~LL~~~g~l~~rl~~fE~~l~~~l~ 495 (766)
T PF10191_consen 418 GVPGLLKALDSIFSQYLSS-LTATL-RSLRKSCGLDSTATSSASSEDWSLFQNALQLLQTCGELLSRLSQFEQSLRSRLL 495 (766)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHcCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23355666666665 44444 3344443322110 11123444444456666666663221
Q ss_pred ----HHc----------C----------C--Cc---------hhhh------cc-----cc---cccHH-------HHHH
Q 041288 575 ----QLS----------G----------I--PL---------RMAE------RS-----RR---QFPLT-------KARD 598 (804)
Q Consensus 575 ----~~~----------g----------~--~~---------~~~~------~~-----~~---~~~f~-------~~r~ 598 (804)
++. | . +. +..+ .+ .+ ...|. ..-+
T Consensus 496 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~l~~ 575 (766)
T PF10191_consen 496 ELASKLLSSSFSSSSDTGEAASGDTRSSSPNPWKGYNYLAASRLAELPNKAEDLQSLSEQASPSFSLLPEARAAVSRLNQ 575 (766)
T ss_pred HHHHhhcccccCCccccccccccccCcccccchHHHHhhccccHHHHHHHHHHHHHhhhccCCccccchHHHHHHHHHHH
Confidence 110 0 0 00 0000 00 00 01122 2344
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhcc-ccccCC--------C---CCcchhHHHHHHHHHHHHHHHh--------------
Q 041288 599 AAEEMLSGLLKNKVDGFMSLIENVN-WMADEP--------L---QNGNEYVNEVIIYLETLVSTAQ-------------- 652 (804)
Q Consensus 599 ~Ae~~I~~lv~~KIdd~le~~~~yD-W~~~~~--------~---~~~s~yi~dli~fL~~~f~s~~-------------- 652 (804)
.+..-+++.+-+.|..-|..+.... |..... | -.|.+||..+..||-++-..+-
T Consensus 576 ~~~~~v~d~l~~~i~~~L~~vp~~~~W~~~~~~~~~~~~LP~FS~~P~eyIT~IGeyLLtLPq~LEp~~~~~~~al~~Al 655 (766)
T PF10191_consen 576 QAQDLVFDVLFSPIRQQLKSVPSLPSWSSAGVGETSTLDLPSFSLSPQEYITQIGEYLLTLPQQLEPFAESDNSALAFAL 655 (766)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcCcccccCCccccccCCCCccccChHHHHHHHHHHHHhhHHhhhhhhcCcchHHHHHH
Confidence 4566667777777776666544443 877211 1 2589999999999977644321
Q ss_pred --hhCC--H----------HHHHHHHHHHHHHHHHHHHhcccCCcccccCHHHHHhHHHHHHHHHHHhhhhCCCCCCCCh
Q 041288 653 --QILP--A----------QVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDA 718 (804)
Q Consensus 653 --~~LP--~----------~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~le~fa~~~~~~~~~~~~ 718 (804)
.++| . .+....+.......+..+++-+ -.++.+|..|-.++..||.||-+-...+ |....
T Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~va~~~~~~~~~~i--~~i~~l~~~~~~QL~~Di~Yl~nVl~aL----g~~~~ 729 (766)
T PF10191_consen 656 HAGKLPYPPESDEEAEEADDFADEWLGKVARATCALYLEQI--LEIPELSESGAKQLATDIDYLSNVLSAL----GLSPP 729 (766)
T ss_pred HhcCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHHHHHHH--hccccCCHHHHHHHHHHHHHHHHHHHHh----CCCCC
Confidence 1122 1 2233444444444444455544 3678999999999999999999999987 22222
Q ss_pred hhHHHHHHHHHHHHHhhhcCCcccccchhhhcccCCCCChhhHHHHHHhhc
Q 041288 719 NQLKTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKLR 769 (804)
Q Consensus 719 ~~L~~~F~ELrQlidLl~s~~~e~y~~~~~R~~kY~~v~~~~~~~lLeK~~ 769 (804)
+ .|.++..|+.. .+++|..-.. .+ |...+..+-|||
T Consensus 730 ~-------~L~~~~~ll~~-~~~~~~~~~~------~~-~~~~~~~v~~mr 765 (766)
T PF10191_consen 730 P-------NLQQLVTLLKA-PPDQYAQVAK------GL-PRRLVAAVAKMR 765 (766)
T ss_pred H-------HHHHHHHHHcC-CHHHHHHHHh------cC-CHHHHHHHHHHh
Confidence 2 24444444443 5678864332 23 555666666665
No 4
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=98.47 E-value=0.0041 Score=74.44 Aligned_cols=510 Identities=14% Similarity=0.185 Sum_probs=263.2
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHH-HHH-hHHHHHHHHHHHHHHHH
Q 041288 52 KPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSK-LQS-VAGPLLASLDSYVEAQT 129 (804)
Q Consensus 52 ~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~-lq~-s~~~L~~kk~~L~~~r~ 129 (804)
+....+..|...+++-..||-.+-+.+|.+|..++.+...+-.++..|..+|.++-+. +.. ....+....+++...++
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~ 90 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKR 90 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 4456788899999999999999999999999999999999999999999998444332 211 13334344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhhHHHHHhhhcCCCCchHHHHHHHhhchhHHHHHHHHHHHHH
Q 041288 130 ISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEF 209 (804)
Q Consensus 130 v~~NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALktLd~Le~~~L~~v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l 209 (804)
--+.....+++|+.-..+=+....+++.+.+|+|-.|...|++++..- ..++...+.+ -.++..|
T Consensus 91 eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L-~~l~~~~~~~--------------~~i~~~L 155 (593)
T PF06248_consen 91 ELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLL-DDLKSSKFEE--------------LKILKLL 155 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcCcCcccc--------------cHHHHHH
Confidence 555555566666666667777788888999999999999999997732 3332222211 1223333
Q ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccccccccccccccCCCCCCCCCCCCCCCc
Q 041288 210 GDWLVEIRVV-SRNLGQLAIGQASSARQREEDLRIKQRQAEEQSRLSLR-DCVYALQEEDDDENGLSNGVESDSNGGAGL 287 (804)
Q Consensus 210 ~~WL~~IR~~-s~~IG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~e~~l~~~~~~~~~~~~~~ 287 (804)
+..+...|+. .. .....|+....|+..... ...+.. .....+.+.. ..
T Consensus 156 k~e~~~lr~~L~~-----------~L~~~w~~lv~~~~~~~k-~~~~~~~~~~v~l~vs~------------------~~ 205 (593)
T PF06248_consen 156 KDEYSELRENLQY-----------QLSEEWERLVQWDSPSSK-QLSSPESTLKVTLHVSK------------------SE 205 (593)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHhheeecCCCcc-cccccccceEEEEEeec------------------Cc
Confidence 3333333332 11 123345555545321100 000000 0000111110 11
Q ss_pred cccCchhHHHHHHHHHhcCch-HHHHHHHHHh---hHhhh-hc----------------cccCCCCcchHHHHHHHHHHh
Q 041288 288 LGFDLTPLYRAYHIHQTLGLE-DRFKQYYFEN---RKLQL-TS----------------DFQVSSMTPFLESHQTFFAQI 346 (804)
Q Consensus 288 ~~iDf~Ply~cihI~~~Lg~~-e~F~~yY~~~---Rr~Q~-~l----------------~l~~~~~~~~~~~l~~yl~~I 346 (804)
..-++..+..++++-..|+.. +.|...--+. ..... .. .+.+.....-..++.+.|..|
T Consensus 206 ~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii~PlI~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l 285 (593)
T PF06248_consen 206 SQESLQDVLQALEILGILDYKLKKFSKFLLEHIIKPLISHPSSIVSVEESEDGSVEITLSYEPDSSKDKRPSPKEVFSNL 285 (593)
T ss_pred ccchHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCcceEEEEeecccccccCCCHHHHHHHH
Confidence 112267777777655444432 3443222221 11110 00 000000000001233444444
Q ss_pred hhHHHhhH-HHH-h-hcCCCcchhhHHHHHHHHHHHHHH-HHHHhhc-cCCChHHHHHHHHHHHHHHHHhhhCCC---Cc
Q 041288 347 AGFFIVED-RIL-R-TGGGLISKIEVENLWDAAVSKMCS-VLEDQFS-RMQTANHLLLIKDYVSLLGVTLRRYGY---PI 418 (804)
Q Consensus 347 ~GFFivE~-~vl-~-tt~~l~s~~~vdelWe~~~~kl~~-~l~~~l~-~~~~~~~ll~iK~~i~lf~~tl~~ygy---~v 418 (804)
.-+|-.=. ++. . .++.-+...=-+.+|..++..++. .|...+- ..++.+.+..+-+.+.=|..+|...|| +.
T Consensus 286 ~~vf~fL~~~L~~~~~~~~~l~~~~g~~i~~~ls~~lI~~~L~~aiP~~~~~l~~f~~v~~~~~~Fe~~L~~lgf~~~~~ 365 (593)
T PF06248_consen 286 LLVFEFLHQHLLSLPSSDSSLSESFGDHIWPRLSELLISNCLSPAIPTSASELQEFEEVLESVEEFEEALKELGFLSSDN 365 (593)
T ss_pred HHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCc
Confidence 33332211 111 0 011111223357788888777765 3433333 222344577788889999999999999 45
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccCCHHH--Hhchh------ccc------cCCCCCCCCCCCc
Q 041288 419 DALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYE--YSMNV------LSF------QIQTSDIVPAFPY 484 (804)
Q Consensus 419 ~~L~~~L~~l~d~Y~~lL~~~~~~~f~~il~~D~y~Pm~V~~~ee--y~~~v------~~~------~~~~~~~~~~fP~ 484 (804)
++|.+.....=.+|..--..+.-..-++++..|.|.-+.|..... -.... .+. +....+...+.|.
T Consensus 366 ~~L~~~~~~i~~~f~~kr~~~iL~~AR~lm~~~~~~~v~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 445 (593)
T PF06248_consen 366 TELSEFVDNIETHFANKRCQDILDKARDLMLRDLHDTVKVGPDSKAELPKLPSPGSSNKAKAKEESMSNENEDSLSPSLF 445 (593)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccccceEecccccccCCCCCCCcccchhhcccchhcccCccccccccc
Confidence 778888888888888887888888889999999999998853300 00000 000 0000000011222
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHhhc---CC---cccHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhHHHHHHHh
Q 041288 485 VAPFSSTVPDCCRIVRSFIEDSVSFMSY---GG---HLEFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAAN 558 (804)
Q Consensus 485 ~lPFS~~vP~~c~~ir~fi~~~~~f~~~---~~---~~~~d~~v~ks~d~lL~~~v~~~L~~~i~~~~~~l~qi~Qi~iN 558 (804)
.||- -++-.+ +..+++-+++-+.. .+ ....+-++|..++. ..-+|=..-.+.+.+ . ..+.|...=|
T Consensus 446 ~~~~-c~IS~s---~~~l~~L~~~~L~ea~~~~~~~a~~l~~~~r~i~~l-y~~~vP~~h~~~l~~--i-p~~aalf~Nd 517 (593)
T PF06248_consen 446 QFPR-CRISKS---AQELVELAHQTLKEACKSSERCAAQLFQTARDIFEL-YRAVVPVYHKKLLES--I-PQQAALFHND 517 (593)
T ss_pred cCCc-ceechh---HHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH-HHHHccHHHHhhccc--c-cHHHHhHhcc
Confidence 2221 122222 23333333333321 11 23355677777763 333333344444432 2 2356666666
Q ss_pred HHHHHHHHHHHHHHHHHHcC-CCchhhhcccccccHH----HHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 041288 559 MAVLERACDFFFRHAAQLSG-IPLRMAERSRRQFPLT----KARDAAEEMLSGLLKNKVDGFMSLIEN 621 (804)
Q Consensus 559 l~~le~ac~~~e~~~~~~~g-~~~~~~~~~~~~~~f~----~~r~~Ae~~I~~lv~~KIdd~le~~~~ 621 (804)
|-|+--++..+.. ....+........+|- .-|+.|++-+-..++...+++++.+.+
T Consensus 518 -------C~ylah~l~~l~~~~~~~~~~~~~~~~~f~d~v~~lr~~g~~~~~~q~~~q~~~l~~~l~~ 578 (593)
T PF06248_consen 518 -------CMYLAHHLLTLGHEYRSKLPSPLKEIATFVDLVPRLRRLGEECFSAQMQRQRSQLLEILDG 578 (593)
T ss_pred -------hHHHHHHHHHhHHHHhhcCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555532222110 0001111111123344 358888888888888888888876544
No 5
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.37 E-value=3.3e-05 Score=84.15 Aligned_cols=159 Identities=14% Similarity=0.174 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041288 54 ETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKN 133 (804)
Q Consensus 54 ~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~N 133 (804)
+...++|..+.+--+..|-+....||..|..++.++..++.+...--..+..+-..|+.+.+.+....-.++..++-++|
T Consensus 34 ~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~ 113 (291)
T PF10475_consen 34 EELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQN 113 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34567888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhhHHHHHhhhcCCCCchHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 041288 134 IDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWL 213 (804)
Q Consensus 134 I~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALktLd~Le~~~L~~v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l~~WL 213 (804)
+.+..+.|+....|.+.-.++++++.+|.|.+||..+++.++. +..+..|.=.+.|...+..+...|.+..-++|.+-.
T Consensus 114 l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~ 192 (291)
T PF10475_consen 114 LKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQL-LEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVC 192 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887 467777766666777777777777766666666543
No 6
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=98.25 E-value=0.0014 Score=76.66 Aligned_cols=328 Identities=14% Similarity=0.177 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHHHhhc-----cCCChHHHHHHHHHHHHHHHHhhh-CCCCc---hHHHHHH--HHHHHHHHHHHHHHH
Q 041288 372 LWDAAVSKMCSVLEDQFS-----RMQTANHLLLIKDYVSLLGVTLRR-YGYPI---DALLDVL--SKHRDKYHELLLSDC 440 (804)
Q Consensus 372 lWe~~~~kl~~~l~~~l~-----~~~~~~~ll~iK~~i~lf~~tl~~-ygy~v---~~L~~~L--~~l~d~Y~~lL~~~~ 440 (804)
.+...+..+.+.+++.+. ...++..+..+-+.++.|-..|+. |+|+. ..-.++| ...+++..++=.+-.
T Consensus 66 ~~~~fi~~ll~~~~~Kl~~~l~~~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~d~~~~~~~vL~~~~~~~~Wl~~E~~~a 145 (494)
T PF04437_consen 66 AREEFIRGLLPPVREKLRSDLPELLDDPSLLSHLIDEILSFDKELRSLYGYPGDWQGSTLDVLCQPDWFDRWLNAEKEFA 145 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTS-HHHHHHHHHHHHHHHHHHHHTS---S------CGGGS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHcCCCCccchhHHHHhcchHHHHHHHHHHHHHH
Confidence 334444445554444443 456788899999999999999965 89998 1234444 377888888878888
Q ss_pred HHHHHHHhhhCCCcccccCCHHHHhchhccccCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHhhc---CCc-c
Q 041288 441 RKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSY---GGH-L 516 (804)
Q Consensus 441 ~~~f~~il~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~~~f~~~---~~~-~ 516 (804)
.++|.+|++.++-=.+..++. .+ ..- .--.|.|-..+.+.+.......+. .++ .
T Consensus 146 ~~r~~~i~~s~~aw~~~~~~~-------------~~---~~~------~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl 203 (494)
T PF04437_consen 146 LERFDEIISSPDAWQIDYDDV-------------EA---DSD------ELKPTKSAERFVKLLESITDRYRPLPSLSHRL 203 (494)
T ss_dssp HHHHH---------------H-------------TT---SSG------GGG-GGHHHHHHHHHHHHHHHHHHHHH---GG
T ss_pred HHHHhhhcccchhhhhhhccc-------------cC---Cch------hhcchHHHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 888999887766443333220 00 000 111355556666666666555431 111 1
Q ss_pred ----cH-HHHHHHHHHHHHHHHHHHHHHHHhh--------ccCcchhHHHHHHHhHHHHHHHHHHHH---HHHH----HH
Q 041288 517 ----EF-FDVVKKYLDRLLGEVLDEALLKLIN--------SSVHGVSQAMQVAANMAVLERACDFFF---RHAA----QL 576 (804)
Q Consensus 517 ----~~-d~~v~ks~d~lL~~~v~~~L~~~i~--------~~~~~l~qi~Qi~iNl~~le~ac~~~e---~~~~----~~ 576 (804)
.+ -.++.++.++|... +..+.. .+..++.+++.++-++.|++.++..+. .|+. +.
T Consensus 204 ~Fl~~iql~lld~~~~~L~~~-----~~~~~~~~s~~~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~ 278 (494)
T PF04437_consen 204 RFLIDIQLPLLDDYHDRLSQS-----LEAFESSTSTLASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKES 278 (494)
T ss_dssp --GHHHHHHHHHHTHHHHHHH-----HHHHHHT----SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHhhcccchhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccch
Confidence 11 14555555555432 222221 122467889999999999998887765 2331 00
Q ss_pred cCC-C--chhhhcccc--c-------ccHHHHHHHHHHHHHHHHHhHHHHHHhhhhhcc---ccccCCC-----CCcchh
Q 041288 577 SGI-P--LRMAERSRR--Q-------FPLTKARDAAEEMLSGLLKNKVDGFMSLIENVN---WMADEPL-----QNGNEY 636 (804)
Q Consensus 577 ~g~-~--~~~~~~~~~--~-------~~f~~~r~~Ae~~I~~lv~~KIdd~le~~~~yD---W~~~~~~-----~~~s~y 636 (804)
... + .....+..+ . ..|+..++.+++.|...+..-+.+-+. +|.. |...+.. ..||..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk--~Y~k~~~W~~~~~~~~~~~~~~S~e 356 (494)
T PF04437_consen 279 ESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASLK--AYFKRSQWSSIESPSDSSPLSPSPE 356 (494)
T ss_dssp -----HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTH--HHHT--GGGT-------------GG
T ss_pred hhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCccCCCCcccccccccCCCCHH
Confidence 000 1 001111111 1 125677888888888888888888876 3444 9766544 689999
Q ss_pred HHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhcccCCcccccCHHHHHhHHHHHHHHHHHhhhhCCCCCCC
Q 041288 637 VNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDG 716 (804)
Q Consensus 637 i~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~le~fa~~~~~~~~~~ 716 (804)
+...+..|...+..+...||+.....++...+.-|.+.|++-++.. .++|.+|..||..|+..|-.....-
T Consensus 357 l~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~~~Il~~--n~Fs~~Ga~Ql~~D~~~L~~~~~~~------- 427 (494)
T PF04437_consen 357 LVPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLWESILMS--NKFSRAGAAQLQFDMRALFSVFSQY------- 427 (494)
T ss_dssp GHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHTTTTT--S-B-HHHHHHHHHHHHHHHTTS--T-------
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhhhc--CeeChhHHHHHHHHHHHHHHHHHhh-------
Confidence 9999999999999999999999999999999999999999944433 3999999999999998875544431
Q ss_pred ChhhHHHHHHHHHHHHHhhhcC
Q 041288 717 DANQLKTALAESRQLVNLLLSN 738 (804)
Q Consensus 717 ~~~~L~~~F~ELrQlidLl~s~ 738 (804)
...-...|..+++.+.||.-+
T Consensus 428 -~~~p~~~f~~l~E~~~LL~L~ 448 (494)
T PF04437_consen 428 -TPRPEAFFKRLREACKLLNLP 448 (494)
T ss_dssp -TSGG-HHHHHHHHHHHHHGGG
T ss_pred -ccCHHHHHHHHHHHHHHcCCC
Confidence 112236788999999988643
No 7
>PF15469 Sec5: Exocyst complex component Sec5
Probab=98.23 E-value=4.4e-05 Score=77.35 Aligned_cols=145 Identities=11% Similarity=0.161 Sum_probs=119.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHH------HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 69 SEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSA------LSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIV 142 (804)
Q Consensus 69 ~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~------l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~~L~ 142 (804)
.++..++..||..||+|.+.|.+|+++...-+.+ +..+...++.+....-..-+.+++.|.-..++..|+..|+
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999877765 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhchhhHHHhhHHHHHhhhcCCCCchHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 041288 143 SCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWL 213 (804)
Q Consensus 143 ~cl~VLel~~k~~e~i~~kkyy~ALktLd~Le~~~L~~v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l~~WL 213 (804)
.|-.+++|-.++.+.|++|.|-.|.+-.....+.+-+........+.|...|..+-..+++.....|.+|-
T Consensus 82 r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~ 152 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP 152 (182)
T ss_pred HHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999887776655332213333344666666666666665555555554
No 8
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=97.98 E-value=0.00016 Score=70.47 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=96.1
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q 041288 52 KPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTIS 131 (804)
Q Consensus 52 ~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~ 131 (804)
+.+.-+..+...-+.-+..++.+++.|||+|..||.....|.....+-++++.++.+.|+++...|..++++|.+-..-.
T Consensus 37 g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s 116 (142)
T PF04048_consen 37 GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRS 116 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 56678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 132 KNIDLALKSIVSCVKLMELCSRANH 156 (804)
Q Consensus 132 ~NI~eai~~L~~cl~VLel~~k~~e 156 (804)
..-.+.++.|..+-.|...=.++..
T Consensus 117 ~~~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 117 QEYKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 9999988888888877776666543
No 9
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=97.88 E-value=0.00047 Score=66.34 Aligned_cols=104 Identities=12% Similarity=0.177 Sum_probs=99.5
Q ss_pred CChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH
Q 041288 51 GKPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTI 130 (804)
Q Consensus 51 ~~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v 130 (804)
.+...-+.+|+.=+++-|++|++.+..||++++..+..+.........++..+..++.+.+.-..++++.-+.+.....+
T Consensus 29 ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~ 108 (132)
T PF10392_consen 29 LDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQ 108 (132)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 131 SKNIDLALKSIVSCVKLMELCSRA 154 (804)
Q Consensus 131 ~~NI~eai~~L~~cl~VLel~~k~ 154 (804)
-+|+.+|.+.|..|.+.|.++.|+
T Consensus 109 L~rl~~t~~LLR~~~r~l~L~~rL 132 (132)
T PF10392_consen 109 LERLHQTSDLLRSVSRFLQLVRRL 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999998874
No 10
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=97.62 E-value=3.1e-05 Score=74.51 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=46.9
Q ss_pred HhcCChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 041288 48 FASGKPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEA 127 (804)
Q Consensus 48 ~~~~~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~ 127 (804)
......+++...|..+.+.-+.++-+++|.+|++|++--..|.++.+...+++..+.++...++++...+....+++-..
T Consensus 23 ~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~ 102 (133)
T PF06148_consen 23 RRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDK 102 (133)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33447788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041288 128 QTISKNIDLALKSIVSCVKLMELCSRANHHL 158 (804)
Q Consensus 128 r~v~~NI~eai~~L~~cl~VLel~~k~~e~i 158 (804)
-..++++.+....++.|+.+-+.+.|+++++
T Consensus 103 l~~~~~l~~~k~~l~~~l~~~~~~~kle~ll 133 (133)
T PF06148_consen 103 LEERKELREEKALLKLLLDISESLEKLEDLL 133 (133)
T ss_dssp HHHHHHHHHHHHT-SSSSHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccC
Confidence 9999999999999999999999999998764
No 11
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.74 Score=55.76 Aligned_cols=580 Identities=13% Similarity=0.149 Sum_probs=299.9
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHH----HHHH-HHHHhHHHHHhHHHHHHHHHHHHH
Q 041288 52 KPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDS----LKSA-LSDSNSKLQSVAGPLLASLDSYVE 126 (804)
Q Consensus 52 ~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~----L~~~-l~~~n~~lq~s~~~L~~kk~~L~~ 126 (804)
+...++..|....+.+...=+.+-+.|...|++|.+.|..+|+.-.+ ..+. ...+-..+..+...--.-=+++++
T Consensus 188 dLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~l~n~i~~~~s~ad~iF~~vl~ 267 (934)
T KOG2347|consen 188 DLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTTKLENCIKNSTSRADLIFEDVLE 267 (934)
T ss_pred HHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 55677777887787777777889999999999999999999976554 1111 222333443333222222344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhhHHHHHhhhcCCCCchHHHHHHHhhchhHHHHHHHHHH
Q 041288 127 AQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDKAPSSTLKRMLEKKTPSIRSYIERKVN 206 (804)
Q Consensus 127 ~r~v~~NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALktLd~Le~~~L~~v~~~~f~~~i~~sIP~lr~~Ik~~~~ 206 (804)
.+.-...+..+..+|+.-.-+..+-+.++.-|+.|.|=-++..-+.=-..+.+ .-||.+|+ ++
T Consensus 268 Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~~~------------t~v~~Fkk-----~l 330 (934)
T KOG2347|consen 268 RKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLFGK------------TEVNLFKK-----VL 330 (934)
T ss_pred cccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhhcc------------cccHHHHH-----HH
Confidence 55555555566777788888889999999999999997776655544444432 22333322 23
Q ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCCCCCCCCCCCC
Q 041288 207 KEFGDWLVEIRVV-SRNLGQLAIGQASSARQREEDLRIKQRQAEEQSRLSLRDCVYALQEEDDDENGLSNGVESDSNGGA 285 (804)
Q Consensus 207 ~~l~~WL~~IR~~-s~~IG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~l~~~~~~~~~~~~ 285 (804)
+++..=+..+|+. .+.+=..-..-. . +.+ +..... |-
T Consensus 331 ~Eve~~m~~~k~~l~~kli~~p~t~~----d-------q~~----------------~ir~L~-~L-------------- 368 (934)
T KOG2347|consen 331 EEVEKRMQSFKETLYRKLIDTPITFE----D-------QSK----------------LIRYLS-EL-------------- 368 (934)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHH----H-------HHH----------------HHHHHH-Hh--------------
Confidence 3333333333322 111110000000 0 000 000000 00
Q ss_pred CccccCchhHHHHHHH--HHhcCchHHHHHHHHH----------hhHhhhhccccCCC---------------------C
Q 041288 286 GLLGFDLTPLYRAYHI--HQTLGLEDRFKQYYFE----------NRKLQLTSDFQVSS---------------------M 332 (804)
Q Consensus 286 ~~~~iDf~Ply~cihI--~~~Lg~~e~F~~yY~~----------~Rr~Q~~l~l~~~~---------------------~ 332 (804)
.---+|+++||-. +..+|..+....-|-+ +++.|-+ .+..+. .
T Consensus 369 ---~~~~dP~wq~I~~q~k~i~~L~~s~~~~~~~~l~~~~~~~~~~q~s~~-g~~~S~t~s~~~~~~~q~~~~~~~~~k~ 444 (934)
T KOG2347|consen 369 ---EPESDPVWQCIGVQNKRILGLLESCWDDHVARLEGLRLSDKWTQPSQN-GVHLSDTASSMENSQNQVINEWKIREKT 444 (934)
T ss_pred ---CcccCchhhhccccchHHHhhhhhcchhHHHHhhcccccccccchhhc-ccccCchHHHHhhhhhhhccchhhhhhc
Confidence 0112377777631 2223333322222211 1111110 101110 0
Q ss_pred cchHHHHHHHHHH---------------hhh-HHHhhHHHHhhcC-CCcchhhHHHHHHHHHHHHHHHHHHhhc------
Q 041288 333 TPFLESHQTFFAQ---------------IAG-FFIVEDRILRTGG-GLISKIEVENLWDAAVSKMCSVLEDQFS------ 389 (804)
Q Consensus 333 ~~~~~~l~~yl~~---------------I~G-FFivE~~vl~tt~-~l~s~~~vdelWe~~~~kl~~~l~~~l~------ 389 (804)
-.+.+....++.- ..| =|..+.++..+.. .-+.++.+-+-|+.+.+-+.-.+...+.
T Consensus 445 ~~r~~fiekL~~l~~s~lP~fWKl~~sy~~G~~~~~~sq~~~s~~~k~~qn~~~~~~~~v~~sLv~~~~~~~~t~s~~~~ 524 (934)
T KOG2347|consen 445 PERVNFIEKLTDLLLSQLPIFWKLAISYFNGDLFSPSSQVQDSDINKMEQNNEVREKREVFHSLVELALMDRFTLSQSDG 524 (934)
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHhcccccCcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence 0011111111111 123 3333332221111 0112233667788776633322221111
Q ss_pred --cCC--ChHH-------HHHHHHHHHHHHHHhhhCCCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc
Q 041288 390 --RMQ--TANH-------LLLIKDYVSLLGVTLRRYGYPID----ALLDVLSKHRDKYHELLLSDCRKQITEALAADKFE 454 (804)
Q Consensus 390 --~~~--~~~~-------ll~iK~~i~lf~~tl~~ygy~v~----~L~~~L~~l~d~Y~~lL~~~~~~~f~~il~~D~y~ 454 (804)
..+ +++. +=.--+++..-|++|....|-.. ++.++.++.+-+---..++........+....+..
T Consensus 525 ~a~~~~~~~dis~~~~~~~~~~i~~vr~~~~sL~ale~~P~~~lq~Iq~li~~~rl~~~~~~~~~~~e~is~l~~re~W~ 604 (934)
T KOG2347|consen 525 KAKSPFGDADISRSLLPWMPLAIKTVRKACQSLEALESLPHDALQPIQKLITEARLQCLSSWMRASTERISTLAKRETWI 604 (934)
T ss_pred cccCCcCCcccccccCccchhHHHHhHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 100 1111 12234678888999999887654 66777777777777778888889998888888887
Q ss_pred ccccC--------CHHHHhchhccccCC-CCCCCCCCCc---ccCCCCchHHHHHHHHHHHHHHHHHhh----cCCcccH
Q 041288 455 QMLMK--------KEYEYSMNVLSFQIQ-TSDIVPAFPY---VAPFSSTVPDCCRIVRSFIEDSVSFMS----YGGHLEF 518 (804)
Q Consensus 455 Pm~V~--------~~eey~~~v~~~~~~-~~~~~~~fP~---~lPFS~~vP~~c~~ir~fi~~~~~f~~----~~~~~~~ 518 (804)
|-.+. ...-|+.++..+ ++ .......||. .||=+.|+-.+|...-+++..+.--++ |......
T Consensus 605 ~~s~~~rn~s~t~LP~~fEt~ivss-l~q~~~~~l~~~gEa~~f~~~~~~~~i~el~I~~~~~fl~c~e~L~~h~~~~~~ 683 (934)
T KOG2347|consen 605 PDSILERNRSITYLPLAFETVIVSS-LEQVNSVLLSFEGEAALFEQPDMQAEIEELSISVRLAFLNCFEDLAIHLEQIGA 683 (934)
T ss_pred cchhhhcccchhhhhHHHHHHHhhh-HHhhhhHHhhccccccccCchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Confidence 76331 122333322111 11 0000011221 122258999999988887777653332 2111111
Q ss_pred HHHHHHHHHHHHHHHHH-----H-HHHH-Hhhcc--CcchhH-HHHHHHhHHHHHHHHHHHHHHHHHHcCCCchh-hhcc
Q 041288 519 FDVVKKYLDRLLGEVLD-----E-ALLK-LINSS--VHGVSQ-AMQVAANMAVLERACDFFFRHAAQLSGIPLRM-AERS 587 (804)
Q Consensus 519 d~~v~ks~d~lL~~~v~-----~-~L~~-~i~~~--~~~l~q-i~Qi~iNl~~le~ac~~~e~~~~~~~g~~~~~-~~~~ 587 (804)
| +- .+.++.-+ + ...+ .++++ ..+-.| +.=.+.|++|+. +.+ +..++++.... ....
T Consensus 684 ~-~~-----q~~t~~~~~~~~~~~~qed~~~ns~~~~~~~~qrlLi~LsN~~yc~----~~~--~~~l~n~fk~~~~~~~ 751 (934)
T KOG2347|consen 684 D-LS-----QLTTQIEGQNGFSNAHQEDISINSADSVVDPEQRLLIVLSNIGYCK----DIL--APTLLNIFKYTWLLSR 751 (934)
T ss_pred c-hh-----hcccccccccccccccchhhhcccccccCChhheeEEEeccHHHHH----HHH--HHHHHHHHHHHhhccc
Confidence 1 10 01111100 0 0011 11110 011122 555677877764 222 11122111000 0000
Q ss_pred cccccHHHHHHHHHHHHHH-HHHhHHHHHHhhhhh------ccccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHH
Q 041288 588 RRQFPLTKARDAAEEMLSG-LLKNKVDGFMSLIEN------VNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVL 660 (804)
Q Consensus 588 ~~~~~f~~~r~~Ae~~I~~-lv~~KIdd~le~~~~------yDW~~~~~~~~~s~yi~dli~fL~~~f~s~~~~LP~~v~ 660 (804)
.....+..+-+.-..++++ .+..|.|-+...++. ++|-.--+.++-.+|++|++.=|-.+-+-++.+ -+...
T Consensus 752 k~iE~is~s~s~l~s~l~e~Yi~~k~~~i~~alEp~~~~~~~~W~~~~~~~~irdYa~E~l~~lV~VhaEvf~i-ap~Ll 830 (934)
T KOG2347|consen 752 KNIEDISMSLSGLGSKLFENYIEDKADPIRGALEPYLLDGGIQWGMAPPVKGIRDYAKEALHNLVAVHAEVFAI-APQLL 830 (934)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhccccccccCCCccchHHHHHHHHHHHHHHHHHHHhc-CHHHH
Confidence 1111233333444555554 677788777654444 589888888999999999999998888878764 45677
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcccccCHHHHHhHHHHHHHHHHHhhhh
Q 041288 661 RRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNL 709 (804)
Q Consensus 661 ~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~le~fa~~~ 709 (804)
..++-.....|++.|+.++ ++.|..++.+|.-|+-+|+.|+|+-+..-
T Consensus 831 ~kiL~~~ve~i~d~L~~l~-~~~v~s~S~nG~lQi~vdl~~l~~~l~~Y 878 (934)
T KOG2347|consen 831 DKILGETVEGISDELLRLF-SCDVQSFSANGALQIMVDLEYLEDVLGPY 878 (934)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhhhhccCCCcceeeeeeHHHHHHHHHHh
Confidence 7788889999999998655 56799999999999999999999887754
No 12
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.065 Score=64.33 Aligned_cols=143 Identities=13% Similarity=0.180 Sum_probs=114.0
Q ss_pred CchhHHHHHHHhcCChh---HHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhH
Q 041288 38 EDLGPFVRKAFASGKPE---TLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVA 114 (804)
Q Consensus 38 d~l~piik~~~~~~~~~---~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~ 114 (804)
.-++-+||+..-+.+.+ .=.+.|+.--++-++.+.++-+.|+|+|..+|....+|-++..+=+++|..+-+.|.++-
T Consensus 30 G~lInvi~nL~~Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k 109 (982)
T KOG3691|consen 30 GLLINVIRNLVGSEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACK 109 (982)
T ss_pred chhhhHHHhhccCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677778777665332 334556777778899999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhhH----HHHHhhhcCCC
Q 041288 115 GPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCT----DALESEFSDKA 181 (804)
Q Consensus 115 ~~L~~kk~~L~~~r~v~~NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALktL----d~Le~~~L~~v 181 (804)
+-+-.++++|.+.-.=...=...++.|..--++.++-.|++++|+.++||+|=.+| +.|..- |..|
T Consensus 110 ~ll~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~-L~~V 179 (982)
T KOG3691|consen 110 ELLNTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGP-LDGV 179 (982)
T ss_pred HHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chhh
Confidence 88888888887655444444556888888888899999999999999999996655 445444 5544
No 13
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.87 Score=52.61 Aligned_cols=530 Identities=13% Similarity=0.076 Sum_probs=256.3
Q ss_pred HHHhcCChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHH-------HhhhhhHHHHHHHHHHHhHHHHHhHHHHH
Q 041288 46 KAFASGKPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDL-------RSLLSDVDSLKSALSDSNSKLQSVAGPLL 118 (804)
Q Consensus 46 ~~~~~~~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L-------~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~ 118 (804)
.+-..-+.+.+-+.|.-+.+.-..+.=++-|.-|-|||+=-..| -+|++.-.+|+++|.++-+++.++-+.+-
T Consensus 41 ~~R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr 120 (705)
T KOG2307|consen 41 LARQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALR 120 (705)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33334477888899999999999999999999999999754444 45666667777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHhhHHHHHhhhcCCCCchHHHHHHHhhchhH
Q 041288 119 ASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNN-NFYMALKCTDALESEFSDKAPSSTLKRMLEKKTPSI 197 (804)
Q Consensus 119 ~kk~~L~~~r~v~~NI~eai~~L~~cl~VLel~~k~~e~i~~k-kyy~ALktLd~Le~~~L~~v~~~~f~~~i~~sIP~l 197 (804)
.+.+++-..|....- |..-..|+..++|+.+.+--. .=..++++-. ||+
T Consensus 121 ~q~se~~~~Re~k~~-------lldl~~v~~~ieKL~k~L~s~psk~q~~~a~s-LER---------------------- 170 (705)
T KOG2307|consen 121 QQCSELCSNREKKIE-------LLDLIYVLVAIEKLSKMLLSPPSKEQQDGATS-LER---------------------- 170 (705)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCcccccccccch-HHH----------------------
Confidence 777777666665443 333445666666666655221 1112222221 221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCCCC
Q 041288 198 RSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASSARQREEDLRIKQRQAEEQSRLSLRDCVYALQEEDDDENGLSNGV 277 (804)
Q Consensus 198 r~~Ik~~~~~~l~~WL~~IR~~s~~IG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~l~~~~ 277 (804)
.--||..+.-+....-..-+.+++.+.+..+.+..+. .-++ +.
T Consensus 171 -----------iAlelnqlkf~a~h~k~~l~p~~e~ria~~~~~L~qs-------l~~l--f~----------------- 213 (705)
T KOG2307|consen 171 -----------IALELNQLKFHASHLKGSLFPHSEERIAAEKIILSQS-------LAVL--FA----------------- 213 (705)
T ss_pred -----------HHHHHHHHHHHHHHhhcccCcchhhHHhhHHHHHHHH-------HHHH--HH-----------------
Confidence 1245555555533322225555554444433332221 0011 00
Q ss_pred CCCCCCCCCccccCchhHHHHHHHHHhcCchHHHHHHHHHhhHhhhh-ccccCCCCcchHHHHHHHHHHhhhHHH-hhHH
Q 041288 278 ESDSNGGAGLLGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLT-SDFQVSSMTPFLESHQTFFAQIAGFFI-VEDR 355 (804)
Q Consensus 278 ~~~~~~~~~~~~iDf~Ply~cihI~~~Lg~~e~F~~yY~~~Rr~Q~~-l~l~~~~~~~~~~~l~~yl~~I~GFFi-vE~~ 355 (804)
+.++-|-+-+|+|+.||.+|+..+.=..-++..=..-.- -.+.-....+..+++.....||.-|.- -...
T Consensus 214 --------eglqsa~~~l~nclriYatld~t~~ae~lfr~~vvapyi~evI~eq~~e~sp~gl~~~ykqilefv~~h~c~ 285 (705)
T KOG2307|consen 214 --------EGLQSAAGDLQNCLRIYATLDLTESAESLFRLLVVAPYIAEVINEQHDETSPSGLLKLYKQILEFVKKHRCT 285 (705)
T ss_pred --------HHhhccHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 011226678999999999999875544444432211000 000000001112567778888888866 3333
Q ss_pred HHh--hcCCCcc--hhh--HHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHhhhCCCCchHH-------H
Q 041288 356 ILR--TGGGLIS--KIE--VENLWDAAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDAL-------L 422 (804)
Q Consensus 356 vl~--tt~~l~s--~~~--vdelWe~~~~kl~~~l~~~l~~~~~~~~ll~iK~~i~lf~~tl~~ygy~v~~L-------~ 422 (804)
.++ |+...+. --+ ++.+|..+++.+-..+-..+ ...+|+.+..==..-.=|..-+++--+=-+.+ +
T Consensus 286 llre~tssdk~g~~~fdFlvnS~l~~ilt~iek~mps~f-~Pgnp~~F~ekyk~t~DFl~~le~~~tC~s~~avt~~Rah 364 (705)
T KOG2307|consen 286 LLREMTSSDKRGLPGFDFLVNSLLTFILTFIEKCMPSVF-VPGNPRLFHEKYKLTQDFLDNLESSHTCRSMLAVTKFRAH 364 (705)
T ss_pred HHHHhchhhcCCCchHHHHHHHHHHHHHHHHHHhccccc-CCCCcHHHHHHHHHHHHHHHhccccCcCchHHHHHHHHhh
Confidence 443 3322222 111 67788877776665544444 33345554332222222333333211111111 0
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHhhhC-CCcccccCCHHHHhchhccccCCCCCCCCCCCcccCCCCchHHHH
Q 041288 423 DVLSKHRDK-----YHELLLSDCRKQITEALAAD-KFEQMLMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCC 496 (804)
Q Consensus 423 ~~L~~l~d~-----Y~~lL~~~~~~~f~~il~~D-~y~Pm~V~~~eey~~~v~~~~~~~~~~~~~fP~~lPFS~~vP~~c 496 (804)
....++-++ |-.+-.+++...|...+... .-.|+.=++. -...|.+|
T Consensus 365 ~~~~sF~kkwNl~VYFqlrfqeiag~ldaaLtp~~~~d~l~d~~~---------------------------Est~~l~l 417 (705)
T KOG2307|consen 365 AICVSFMKKWNLPVYFQLRFQEIAGQLDAALTPEMFADPLTDENR---------------------------ESTPQLHL 417 (705)
T ss_pred hHHHHHHHhcCcceeEeeeHHHHHHHHHHhcCchhhccccccccc---------------------------ccCccchh
Confidence 111111111 22233444445555444332 1111111111 11223344
Q ss_pred HHHHHHHHHHHHHhhcCC--cccHHHHHHHHHHHHHHHH--HHHHHHHHhhccCc---chhHHHHHH-HhHHHHHHHHHH
Q 041288 497 RIVRSFIEDSVSFMSYGG--HLEFFDVVKKYLDRLLGEV--LDEALLKLINSSVH---GVSQAMQVA-ANMAVLERACDF 568 (804)
Q Consensus 497 ~~ir~fi~~~~~f~~~~~--~~~~d~~v~ks~d~lL~~~--v~~~L~~~i~~~~~---~l~qi~Qi~-iNl~~le~ac~~ 568 (804)
..-+..++..-.-+.... ..-+|...|=.+-. |.|. +..+|...-.++.. +-.|++=.+ -...-+...|++
T Consensus 418 ~as~a~~ealrrcWsddvylp~~vdKl~rltlQl-llRysrwisaitns~gs~~skp~trtqlvyv~hdd~~llqevl~e 496 (705)
T KOG2307|consen 418 GASRAIIEALRRCWSDDVYLPPIVDKLWRLTLQL-LLRYSRWISAITNSFGSEKSKPATRTQLVYVRHDDGNLLQEVLPE 496 (705)
T ss_pred hHhHHHHHHHHHHccccccchhhHHHHHHHHHHH-HHHHhHHHHHHHhccCCCCCCCcchhheeeeecccchHHHHHhHH
Confidence 444444333333332111 11122222222221 2122 11133332222221 122222222 111223444566
Q ss_pred HHHHHHHHcCCCch-hh---h-c-ccccccHHHHHHHHHHHHHHHHHhHHHH----HHhhhhhccccccCCCCCcchhHH
Q 041288 569 FFRHAAQLSGIPLR-MA---E-R-SRRQFPLTKARDAAEEMLSGLLKNKVDG----FMSLIENVNWMADEPLQNGNEYVN 638 (804)
Q Consensus 569 ~e~~~~~~~g~~~~-~~---~-~-~~~~~~f~~~r~~Ae~~I~~lv~~KIdd----~le~~~~yDW~~~~~~~~~s~yi~ 638 (804)
+..++......-.. .. . . ..++.+|.+.--.-.+.|++++-.+--+ ..+..+-|-||-.++|+.+|.|+.
T Consensus 497 lle~I~~kl~~~~k~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~~~~~lrqv~dvprlyR~TnKevPtthSsYVv 576 (705)
T KOG2307|consen 497 LLESIWGKLHDITKVFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDVCHQELRQVSDVPRLYRWTNKEVPTTHSSYVV 576 (705)
T ss_pred HHHHHHhhccchhhhhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHHHHHHHHHHhccHHHHHhccCCCCCcchHHHH
Confidence 55544332211110 00 0 0 0112223333333344455554444333 334446689999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhcc
Q 041288 639 EVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAV 679 (804)
Q Consensus 639 dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~L 679 (804)
.++.=++..-.-.-.-|-..+.+.+..++..||.++..+.-
T Consensus 577 ~aLrpvkal~eg~k~~L~q~~~eeil~gv~seit~~yye~v 617 (705)
T KOG2307|consen 577 TALRPVKALKEGLKCELEQPHTEEILRGVNSEITNYYYEKV 617 (705)
T ss_pred HHHHHHHHHHHhhhhhhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 99887776555443445666788999999999999988743
No 14
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=96.97 E-value=0.0057 Score=54.13 Aligned_cols=74 Identities=26% Similarity=0.446 Sum_probs=62.0
Q ss_pred hHHHHHHHhcCC---hhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhH
Q 041288 41 GPFVRKAFASGK---PETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVA 114 (804)
Q Consensus 41 ~piik~~~~~~~---~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~ 114 (804)
-+.++..+.+.. ...+...|...++.++.|+..++..||.+||.+.+++..++.++.+|++.+.++...++...
T Consensus 9 ~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 9 DEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555543 34567789999999999999999999999999999999999999999999999998887643
No 15
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=96.83 E-value=0.065 Score=56.62 Aligned_cols=99 Identities=18% Similarity=0.330 Sum_probs=82.3
Q ss_pred HHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHH-----hhhCCHHHHHHHHHHHHHHHHHHHHhcccCCccc
Q 041288 611 KVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTA-----QQILPAQVLRRVLQDVLSHISETIVGAVYGDSVK 685 (804)
Q Consensus 611 KIdd~le~~~~yDW~~~~~~~~~s~yi~dli~fL~~~f~s~-----~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk 685 (804)
.++.+++..+...|.-.+++.++|.|+.+++.-++.....+ ...+|.++...+.-.+...+.+.|++=+ ..||
T Consensus 68 ~~~~i~~~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~--s~vk 145 (234)
T PF10474_consen 68 DLEQILNSIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGY--SRVK 145 (234)
T ss_pred CHHHHHHHHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH--Hhcc
Confidence 34466666778899999999999999999999998864433 2578999888888777777778887777 6799
Q ss_pred ccCHHHHHhHHHHHHHHHHHhhhhCC
Q 041288 686 RFNINAIMGIDVDIRLLESFADNLAP 711 (804)
Q Consensus 686 ~in~~al~n~~~Dv~~le~fa~~~~~ 711 (804)
+-|.+|=+.+.+|++.+...+....+
T Consensus 146 KCs~eGRalM~lD~q~~~~~le~l~~ 171 (234)
T PF10474_consen 146 KCSNEGRALMQLDFQQLQNKLEKLSG 171 (234)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999888887744
No 16
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=1.9 Score=51.41 Aligned_cols=207 Identities=13% Similarity=0.210 Sum_probs=137.6
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHH----HHHcCC-Cchh-hhcc--------cccccHHHHHHHHHHHHHH-----HHH
Q 041288 549 VSQAMQVAANMAVLERACDFFFRHA----AQLSGI-PLRM-AERS--------RRQFPLTKARDAAEEMLSG-----LLK 609 (804)
Q Consensus 549 l~qi~Qi~iNl~~le~ac~~~e~~~----~~~~g~-~~~~-~~~~--------~~~~~f~~~r~~Ae~~I~~-----lv~ 609 (804)
-.+..++++-+.-...+|.|+.... ....|+ |... ..++ ..+..|++.-+.+-+.+|. .|+
T Consensus 538 d~~~~~fl~~LNn~~ls~eyi~~L~~~le~~~~~vf~~~~d~~~l~~~l~~l~~l~~~f~~L~k~g~~~Lf~~~lkpRi~ 617 (773)
T KOG0412|consen 538 DLAKENFLTALNNADLSKEYIHTLKKTLESDCTEVFPQNFDRAKLKSCLSNLEALSLKFKDLLKWGMEQLFSTVLKPRIR 617 (773)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHh
Confidence 3477888887777777788877322 122232 1100 0001 2244588888888777765 445
Q ss_pred hHHHHHHhhhhhcccccc--CCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhcccCCccccc
Q 041288 610 NKVDGFMSLIENVNWMAD--EPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRF 687 (804)
Q Consensus 610 ~KIdd~le~~~~yDW~~~--~~~~~~s~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~i 687 (804)
.-||.|... .|+-+-+ +......+|+..++.=++..+..+-..|-+.....+.--+++.|+..|-..+. -.++
T Consensus 618 ~~id~f~~i--s~~ls~edy~~~ea~d~~Vq~fl~~v~~l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE~~i~---k~~F 692 (773)
T KOG0412|consen 618 PWIDTFVNI--SYNLSEEDYAAYEANDPWVQQFLSSVEQLLAELKNSLTPENYDSLLSLIVDEIATQLEQIIW---KIQF 692 (773)
T ss_pred hhhhhhhhh--hccccHHHHhhhccCChHHHHHHHHHHHHHHhhhcccChhhHHHHHHHHHHHHHHHHHHHHH---HhHH
Confidence 556665541 2322222 22334467888777777777776644465666666666699999999986663 3679
Q ss_pred CHHHHHhHHHHHHHHHHHhhhhCCCCCCCChhhHHHHHHHHHHHHHhhhcCCccc---ccchhhhcccCCCCChhhHHHH
Q 041288 688 NINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPEN---FLNPVIRERSYNALDHRKVVTI 764 (804)
Q Consensus 688 n~~al~n~~~Dv~~le~fa~~~~~~~~~~~~~~L~~~F~ELrQlidLl~s~~~e~---y~~~~~R~~kY~~v~~~~~~~l 764 (804)
|.-|..+++.|+..|-++.... ..-++++-|.-|.|++-||--++..+ |.+|..-+-.+- ++|.....+
T Consensus 693 NrlG~lqLDre~r~lis~lt~~-------t~~~lRdKf~RLtQIatLLnle~~se~le~w~~~~g~~twr-Lt~~EVr~v 764 (773)
T KOG0412|consen 693 NRLGGLQLDRELRALISYLTGV-------TQWNLRDKFARLTQIATLLNLEKDSEILEYWGPNSGPLTWR-LTPAEVRKV 764 (773)
T ss_pred HhhcchHhhHHHHHHHHHhhcc-------cchhHHHHHHHHHHHHHHHcccccchHHHhcCCCCCCceEE-eCHHHHHHH
Confidence 9999999999999887776532 45789999999999999997776544 666764444455 999999999
Q ss_pred HHhh
Q 041288 765 SEKL 768 (804)
Q Consensus 765 LeK~ 768 (804)
|++-
T Consensus 765 l~lr 768 (773)
T KOG0412|consen 765 LALR 768 (773)
T ss_pred HHhh
Confidence 8863
No 17
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=96.66 E-value=0.13 Score=57.25 Aligned_cols=115 Identities=16% Similarity=0.224 Sum_probs=91.1
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHH---HHhHHHHHHHHHHHHHHHHHHHHH
Q 041288 58 QHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKL---QSVAGPLLASLDSYVEAQTISKNI 134 (804)
Q Consensus 58 ~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~l---q~s~~~L~~kk~~L~~~r~v~~NI 134 (804)
+.|.+-+.+-+.+|+.+|..||.-||++-+.+..++.+..++.+++.++..+| .+.......+.+...+.|+....+
T Consensus 17 ~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~~~~~ 96 (338)
T PF04124_consen 17 QSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKKASLL 96 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888999999999999999999999999999999999988888888666 455666666666666665555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhhHHHHHh
Q 041288 135 DLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALES 175 (804)
Q Consensus 135 ~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALktLd~Le~ 175 (804)
.+.....+.+||+=.-+..-|++|.|=.||-...-+.+
T Consensus 97 ---l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~ 134 (338)
T PF04124_consen 97 ---LENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRR 134 (338)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHH
Confidence 45555667788888888899999999999876655544
No 18
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=96.63 E-value=0.1 Score=59.10 Aligned_cols=159 Identities=14% Similarity=0.203 Sum_probs=119.7
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Q 041288 52 KPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTIS 131 (804)
Q Consensus 52 ~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~ 131 (804)
+.+.++..++..+.+-|.||.+.-..+...=.++-..|-.++....+|-.+|.++...-.++-..+.+-.+..-..=..+
T Consensus 22 ~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AK 101 (383)
T PF04100_consen 22 NLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAK 101 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999887766553223344556677788888888888888888888777777777887888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHH---HhhHHHHHhhhcCCCCchH-HHHHHHhhchhHHHHHHHHHHH
Q 041288 132 KNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMA---LKCTDALESEFSDKAPSST-LKRMLEKKTPSIRSYIERKVNK 207 (804)
Q Consensus 132 ~NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~A---LktLd~Le~~~L~~v~~~~-f~~~i~~sIP~lr~~Ik~~~~~ 207 (804)
+|+..+|-+|+.-.-+...+..+..+++.++|=.+ |..+-+|- .|..++..-. ++. +.++|-.++..+++.++.
T Consensus 102 rNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~-~~F~~yksi~~I~~-L~~~i~~l~~~L~~qI~~ 179 (383)
T PF04100_consen 102 RNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELL-EHFKPYKSIPQIAE-LSKRIDQLQNELKEQIFE 179 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHcccCcHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999766 44444554 4555544332 333 666777777777776666
Q ss_pred HHHHH
Q 041288 208 EFGDW 212 (804)
Q Consensus 208 ~l~~W 212 (804)
||..-
T Consensus 180 df~~~ 184 (383)
T PF04100_consen 180 DFEEL 184 (383)
T ss_pred HHHHH
Confidence 66653
No 19
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=96.18 E-value=5 Score=49.35 Aligned_cols=161 Identities=18% Similarity=0.264 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhh-------hccccccCCC----CCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHH
Q 041288 595 KARDAAEEMLSGLLKNKVDGFMSLIE-------NVNWMADEPL----QNGNEYVNEVIIYLETLVSTAQQILPAQVLRRV 663 (804)
Q Consensus 595 ~~r~~Ae~~I~~lv~~KIdd~le~~~-------~yDW~~~~~~----~~~s~yi~dli~fL~~~f~s~~~~LP~~v~~~~ 663 (804)
+.-+..|..|-.-++.-||-++.-+. .-|..|.+.. ..|+..-..++.||+..+..+-..|..+..+
T Consensus 527 ~~~~~le~~v~~gL~~~i~~l~~~v~~iL~~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~~~nl~-- 604 (710)
T PF07393_consen 527 SFESRLEEKVNAGLNKGIDVLMNWVEFILSEQKKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLDGSNLD-- 604 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHccchhHH--
Confidence 44444455555555555555444221 1367775332 3799999999999999999887777766555
Q ss_pred HHHHHHHHHHHHHhcccCCcccc--cCHHHHHhHHHHHHHHHHHhhhhCCCCCCCChhhHHHHHHHHHHHHHhhhcCCcc
Q 041288 664 LQDVLSHISETIVGAVYGDSVKR--FNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPE 741 (804)
Q Consensus 664 ~~~a~~his~~ll~~Ll~~~vk~--in~~al~n~~~Dv~~le~fa~~~~~~~~~~~~~~L~~~F~ELrQlidLl~s~~~e 741 (804)
.-+..|+.+|...|+ +.+++ ||..|=..+..||.+.-+|+.+. +.+.+...|.-|+++.+||.- +|+
T Consensus 605 --~f~~elg~~l~~~l~-~h~kk~~vs~~Gg~~l~~Dl~~Y~~~~~~~-------~~~~v~~~F~~L~~l~nl~~v-~~~ 673 (710)
T PF07393_consen 605 --VFLQELGERLHRLLL-KHLKKFTVSSTGGLQLIKDLNEYQDFIRSW-------GIPSVDEKFEALKELGNLFIV-DPE 673 (710)
T ss_pred --HHHHHHHHHHHHHHH-HHHHhCccCchhHHHHHHHHHHHHHHHHHc-------CCchHHHHHHHHHHHHhheee-cHH
Confidence 445677888777776 55554 77888888999999999999885 567899999999999999987 443
Q ss_pred cccchhhhcccCCCCChhhHHHHHHhhc
Q 041288 742 NFLNPVIRERSYNALDHRKVVTISEKLR 769 (804)
Q Consensus 742 ~y~~~~~R~~kY~~v~~~~~~~lLeK~~ 769 (804)
. +....++..-++++++.+...+.+-.
T Consensus 674 ~-l~~~~~~~~~~~~~~~~i~~fi~~R~ 700 (710)
T PF07393_consen 674 N-LKELCREGQLGRFSPEEIYEFIQRRS 700 (710)
T ss_pred H-HHHHHhhccccCCCHHHHHHHHHHhh
Confidence 3 33334443447788888888887543
No 20
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=95.37 E-value=6.7 Score=46.76 Aligned_cols=335 Identities=14% Similarity=0.152 Sum_probs=169.0
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhCCCC-chHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccCCHHH
Q 041288 390 RMQTANHLLLIKDYVSLLGVTLRRYGYP-IDAL-----LDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYE 463 (804)
Q Consensus 390 ~~~~~~~ll~iK~~i~lf~~tl~~ygy~-v~~L-----~~~L~~l~d~Y~~lL~~~~~~~f~~il~~D~y~Pm~V~~~ee 463 (804)
..-+++.++.+=+++..+-.+|++-|+. .+.| .+.+..+.+.|...+..+...=+.+++..|.
T Consensus 160 ~~l~~~~ll~ll~W~~~Y~~~m~~~~l~~~~~l~plL~~~~~~~L~~~Yl~~~~~~~~eW~~n~l~~E~----------- 228 (566)
T PF06046_consen 160 PDLEANDLLSLLSWVNTYPSIMGHPDLAIKEQLGPLLPDEKLEELEDDYLSRIQKKMKEWMDNILEQEV----------- 228 (566)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred CCCCHHHHhhheechhhChHhhcCCcccchhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3345677888888888888899998877 4444 3556789999999999999999998886542
Q ss_pred HhchhccccCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041288 464 YSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGHLEFFDVVKKYLDRLLGEVLDEALLKLIN 543 (804)
Q Consensus 464 y~~~v~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~~~f~~~~~~~~~d~~v~ks~d~lL~~~v~~~L~~~i~ 543 (804)
+.....-+++ . -+--..+|+.-..+.+. |++-++-........+-..+...+-.+| +..-..+..++.
T Consensus 229 -~~w~~~~~Pe-~-----~~dg~y~t~~~~difqm----i~qql~va~~~l~~~v~~~v~~~~~~~l-~~~~~~~~~~~~ 296 (566)
T PF06046_consen 229 -KDWSEEKEPE-E-----DEDGYYHTPLPVDIFQM----INQQLDVASESLQGKVLQRVLEELANFL-KSYQDAWQEFKE 296 (566)
T ss_dssp -HHHHC-S--E-E------TTS-EE-HHHHHHHHH----HHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred -HHhcccCCCC-c-----CCCCCeecCcHHHHHHH----HHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 1111111111 0 01112334433333443 3443333321111122222222222222 112222222221
Q ss_pred ccC------------cchhHHHHHHHhHHHHHHHHHHHHHHHHH----HcC-CCchh----hhc-ccccccHHHHHHHHH
Q 041288 544 SSV------------HGVSQAMQVAANMAVLERACDFFFRHAAQ----LSG-IPLRM----AER-SRRQFPLTKARDAAE 601 (804)
Q Consensus 544 ~~~------------~~l~qi~Qi~iNl~~le~ac~~~e~~~~~----~~g-~~~~~----~~~-~~~~~~f~~~r~~Ae 601 (804)
... .+..+.+=-++| -|..+..++.+ ... +.... ... ......|.+..+.|-
T Consensus 297 ~~~~~~~~~~~~~~~~~~~eyliA~~N------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 370 (566)
T PF06046_consen 297 EHFKDRSSVKPKENPPGYLEYLIAVAN------NCLRCRDYVESLEQKFEEKVSQKYMERISSDLEELMDGFDDLAKECC 370 (566)
T ss_dssp HHHHHHHHHHHCC--S-HHHHHHHHHH------HHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHhhhcccccccccchHHHHHHHhc------cHHHHHHHHHHHHHhcccccchHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 100 112222222233 12222222212 111 11000 001 122344778888888
Q ss_pred HHHHHHHHhHHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhcccC
Q 041288 602 EMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYG 681 (804)
Q Consensus 602 ~~I~~lv~~KIdd~le~~~~yDW~~~~~~~~~s~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~ 681 (804)
..|.+.|-.-++..+.-+-.=.|... ..+..++.=++.-+.-+...|.+...+.++..+.+++....+..|+.
T Consensus 371 ~~L~~~if~Dl~p~~~~Lft~~W~~~-------~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~ 443 (566)
T PF06046_consen 371 QYLLEEIFNDLKPHFKKLFTKKWYSG-------EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMK 443 (566)
T ss_dssp HHHHHHHHHCTHHHHCTTTSGGGCTS--------HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhHHHHHHhCcCcCcCc-------chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777654433468765 67888888788777666444999999999999999999999998887
Q ss_pred Ccc----cccCHHHHHhHHHHHHHHHHHhhhhCCCCCCCChhhHHHHHHHHHHHHHhhhcCCcccccchhhh-cccCCCC
Q 041288 682 DSV----KRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIR-ERSYNAL 756 (804)
Q Consensus 682 ~~v----k~in~~al~n~~~Dv~~le~fa~~~~~~~~~~~~~~L~~~F~ELrQlidLl~s~~~e~y~~~~~R-~~kY~~v 756 (804)
..+ +.....|...+..|+..+.+|..... ....+...|.-|..++.++...+++.+.....- -++|+-+
T Consensus 444 kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~------~~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~~~ypD~ 517 (566)
T PF06046_consen 444 KKIKFKNKEERKEAAERIRRDAEQLKSFFSKLG------SKSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLLQKYPDI 517 (566)
T ss_dssp ---------CCCCCHHHHHHHHHHHHHHHHHHT------HHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHCC-TT-
T ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccccchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 654 45688899999999999999999872 356678899999999999988899888544443 3789999
Q ss_pred ChhhHHHHHH
Q 041288 757 DHRKVVTISE 766 (804)
Q Consensus 757 ~~~~~~~lLe 766 (804)
..+.+..||.
T Consensus 518 ~~~~v~alL~ 527 (566)
T PF06046_consen 518 SEEHVEALLA 527 (566)
T ss_dssp -SHHHHHHHC
T ss_pred CHHHHHHHHH
Confidence 9999888885
No 21
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=1.7 Score=52.54 Aligned_cols=283 Identities=12% Similarity=0.006 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch-hhHH---HhhHH
Q 041288 96 VDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNN-FYMA---LKCTD 171 (804)
Q Consensus 96 ~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~~L~~cl~VLel~~k~~e~i~~kk-yy~A---LktLd 171 (804)
-...+++..++..++-+.-+.|.+..++|+....--.+-......+......+.+|-+|-|+...-+ +-++ ..+|.
T Consensus 82 L~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLk 161 (800)
T KOG2176|consen 82 LLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALK 161 (800)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3455677888888888888999999999998888777777777778888888888888888765422 3333 22222
Q ss_pred HHHhhhcCCCCchHHHHHHHhhchhHHH---------HHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHH
Q 041288 172 ALESEFSDKAPSSTLKRMLEKKTPSIRS---------YIERKVNKEFGDWLVEIRVVSRNLGQL--AIGQASSARQREED 240 (804)
Q Consensus 172 ~Le~~~L~~v~~~~f~~~i~~sIP~lr~---------~Ik~~~~~~l~~WL~~IR~~s~~IG~~--a~~~~~~~~~~~~~ 240 (804)
-++. +-+.=-..+|..+- .||+... +.....+|+.+..||+. -+++++..++. +.
T Consensus 162 tle~----------lE~~yL~~~~~~~~~~~i~~~Ip~ik~~i~---~~~~~~~~e~L~~irk~s~~iGq~ai~~~~-~a 227 (800)
T KOG2176|consen 162 TLES----------LEKVYLPRVSNFRFLIVIQNRIPFIKEVIK---SKSMSDFREWLENIRKKSPKIGQTAIQQAK-EA 227 (800)
T ss_pred HHHH----------HHHHHHHhcccchhhHHHhhcchHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HH
Confidence 2221 11122233443322 2333333 23445566666666665 33444444444 44
Q ss_pred HHHHHHHHH-Hhhhccccc--cccccccccccccCCCCCCCCCCCCCCCccccCchhHHHHHHHHHhcCchHHHHHHHHH
Q 041288 241 LRIKQRQAE-EQSRLSLRD--CVYALQEEDDDENGLSNGVESDSNGGAGLLGFDLTPLYRAYHIHQTLGLEDRFKQYYFE 317 (804)
Q Consensus 241 ~~~~~~~~~-~~~~~~~~~--~~~~l~~~~~~e~~l~~~~~~~~~~~~~~~~iDf~Ply~cihI~~~Lg~~e~F~~yY~~ 317 (804)
+..|.+... .......++ ....+......|.| .+ -....++++|.+.|.||....+.-..+.-+++.
T Consensus 228 r~r~~~~~~~~~~~~e~~~~~~l~~l~~~~~~e~d--------~~--~~s~~~~~~~~~~~~~~~~~d~~plyr~~hi~~ 297 (800)
T KOG2176|consen 228 RQRWEEEKFNKQIEAEEQSTGSLAKLAYGLEFEED--------DE--HDSIMIFQDLNELSGAIDKFDFEPLYRCLHIHS 297 (800)
T ss_pred HHHHHHHhhhccchHHHhhhhhHHHHhcccccccc--------cc--cccchhccCcccccchheeecccHHHHHHHHHH
Confidence 444442111 000000000 00001111111111 11 146679999999999999999999888888888
Q ss_pred hhHhhhhccccCCCCcchHHH-HHHHHHHhhhHHHhhHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHhhccCCChHH
Q 041288 318 NRKLQLTSDFQVSSMTPFLES-HQTFFAQIAGFFIVEDRILRTGGGLISKIEVENLWDAAVSKMCSVLEDQFSRMQTANH 396 (804)
Q Consensus 318 ~Rr~Q~~l~l~~~~~~~~~~~-l~~yl~~I~GFFivE~~vl~tt~~l~s~~~vdelWe~~~~kl~~~l~~~l~~~~~~~~ 396 (804)
.+..+.+ |... ...=..|+.|+|.+..+.+.+..++.+...-...|-.+-.++......++.+ ++.
T Consensus 298 ~Lg~~~~----------f~~~y~~nr~~q~~~~~q~~~t~~~~l~~~~ty~~~i~Gffived~il~t~~~~~s~---~~v 364 (800)
T KOG2176|consen 298 VLGLRER----------FRAYYQMNRRLQADLVLQPPFTQLDSLEGYQTYFNQIAGFFIVEDHILRTTGGFLSY---NEV 364 (800)
T ss_pred HHhhHHH----------HHHHHHHhHHHhhhcccCCCcchhhHHHHHHHHHHHHhhHHHHHHHHHHhhhcccch---HHH
Confidence 8777643 3222 2345667999999999999999999999999999999999999998888877 333
Q ss_pred HHHHHHHHHHHHHHhhhCC
Q 041288 397 LLLIKDYVSLLGVTLRRYG 415 (804)
Q Consensus 397 ll~iK~~i~lf~~tl~~yg 415 (804)
=..-+..+.-|+.||+.+-
T Consensus 365 e~lW~~~i~k~v~~L~~~~ 383 (800)
T KOG2176|consen 365 EELWDTAISKLVATLSYQS 383 (800)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3337788888999998764
No 22
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=95.00 E-value=11 Score=45.09 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhH-------HHHHHHHHHHH
Q 041288 53 PETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVA-------GPLLASLDSYV 125 (804)
Q Consensus 53 ~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~-------~~L~~kk~~L~ 125 (804)
-+.+-.+++.-|+.|.+|+.+|-..-|-|.++|.|++..|++-+..|-.+|.......+... -.+.++.....
T Consensus 22 Ir~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~a~svA~tp~raeqnp~~e 101 (863)
T KOG2033|consen 22 IREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLHANSVAKTPGRAEQNPAGE 101 (863)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcchhhcCchhh
Confidence 34566789999999999999999999999999999999999999999999999988877653 22333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhhHHHHHhhhcCC--CCchHHHHHHHhhchhHHHHHH
Q 041288 126 EAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDK--APSSTLKRMLEKKTPSIRSYIE 202 (804)
Q Consensus 126 ~~r~v~~NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALktLd~Le~~~L~~--v~~~~f~~~i~~sIP~lr~~Ik 202 (804)
+.+.+...| --+++.=.++--.+.++.||.|-...=--+|++=+- +... .++.++.|.++.++.
T Consensus 102 ~~Yg~aaqV----------KyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLdss---s~ll~nfP~l~~Qw~ 167 (863)
T KOG2033|consen 102 HLYGTAAQV----------KYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDSS---SMLLKNFPALTNQWV 167 (863)
T ss_pred HHHHHHHHH----------HHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCC---cHHHhhcHHHHHHHH
Confidence 333322222 224455566777788899999866654444443211 1211 267788888877664
No 23
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=94.46 E-value=0.13 Score=47.22 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhcccCCcccccCHHHHHhHHHHHHHHHHHhhhhCCCCCCCChhhHHHHHHHHHHHHHhhhcCCcccc
Q 041288 664 LQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPENF 743 (804)
Q Consensus 664 ~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~le~fa~~~~~~~~~~~~~~L~~~F~ELrQlidLl~s~~~e~y 743 (804)
+...|.+|+..+++-|+. ..+..|..--.++..-+..+|+|+.+. |. .......|..++|.++||.. +-+..
T Consensus 3 f~qlf~~i~~~~fN~ll~-~~~~~~~~~g~qi~~nls~l~~W~~~~----~l--~~~~~~~l~~l~Qa~~lL~~-~k~~~ 74 (105)
T PF01843_consen 3 FSQLFHYINASLFNSLLL-RRKYCSWSKGVQIRYNLSELEDWARSH----GL--EEAAEEHLQPLSQAANLLQL-RKSTL 74 (105)
T ss_dssp HHHHHHHHHHHHHHHHHC-HSS-B-HHHHHHHHHHHHHHHHCCCCT----TS--TTH-HHHCHHHHHHHHHCCC---SSH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCccccccHHHHHHHHHHHHHHHHhc----cc--chhHHHHHHHHHHHHHHHHh-cCcch
Confidence 345678899999997774 334588888899999999999999885 33 12268999999999999998 44444
Q ss_pred cchhhhcccCCCCChhhHHHHHHhhcCCC
Q 041288 744 LNPVIRERSYNALDHRKVVTISEKLRDPS 772 (804)
Q Consensus 744 ~~~~~R~~kY~~v~~~~~~~lLeK~~~~~ 772 (804)
-|-..+..-+++++|.....||++|++.+
T Consensus 75 ~d~~~~~~~c~~Ln~~Qi~~iL~~Y~~~~ 103 (105)
T PF01843_consen 75 QDWDSLRETCPSLNPAQIRKILSNYQPDD 103 (105)
T ss_dssp HHHHHHCCCTTTS-HHHHHHHHCCB---T
T ss_pred hHHHHHHHHcccCCHHHHHHHHHhCCCcC
Confidence 56677777899999999999999998764
No 24
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=91.77 E-value=1.2 Score=42.54 Aligned_cols=72 Identities=13% Similarity=0.207 Sum_probs=59.7
Q ss_pred HHhHHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhcc
Q 041288 608 LKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAV 679 (804)
Q Consensus 608 v~~KIdd~le~~~~yDW~~~~~~~~~s~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~L 679 (804)
+...+...-+..+-|-||-.++|++||.|+..++.-|..........+|.+....++..+++++++++....
T Consensus 8 c~~~L~~v~~Ip~~YR~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~~~ 79 (125)
T PF12022_consen 8 CVEPLKQVRSIPRQYRMTNKPVPTKPSPYVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYEIA 79 (125)
T ss_pred HHHHHHHHhhhHHHhhccCCCCCCCccHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445679999999999999999999999999888776789999999999999999999998654
No 25
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.27 E-value=49 Score=39.81 Aligned_cols=144 Identities=12% Similarity=0.046 Sum_probs=95.2
Q ss_pred hhcccCCCCchhHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHH
Q 041288 30 LSSAIGNGEDLGPFVRKAFASGKPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSK 109 (804)
Q Consensus 30 ~~~~~~~~d~l~piik~~~~~~~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~ 109 (804)
++++....++..----+..++|....-++.|.+-+++.++|++.--...|.+...-..++..--..-..|...+.++.+.
T Consensus 50 ls~fln~~fSv~~~tSas~~s~~ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~ 129 (797)
T KOG2211|consen 50 LSSFLNTLFSVQMMTSASKESNRIATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSE 129 (797)
T ss_pred ccccccchhhhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44444445555556667888999999999999999999999998777777776655555444333333333333333333
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--hhhHHHhhHHHH
Q 041288 110 LQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNN--NFYMALKCTDAL 173 (804)
Q Consensus 110 lq~s~~~L~~kk~~L~~~r~v~~NI~eai~~L~~cl~VLel~~k~~e~i~~k--kyy~ALktLd~L 173 (804)
+...-..+.+-.+.....--+-.|...|.+.|....+.|+|..|+..+..-. .--.|.+++-+|
T Consensus 130 i~riknd~~epyk~i~~kt~vl~rLhva~~lLrrsgr~l~LskkL~~l~~~~~~d~traaq~lneL 195 (797)
T KOG2211|consen 130 IKRIKNDNKEPYKIIWLKTMVLTRLHVAENLLRRSGRALELSKKLASLNSSMVVDATRAAQTLNEL 195 (797)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHHH
Confidence 3333333333333333344566788899999999999999999999776433 466677777666
No 26
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=84.57 E-value=1.1e+02 Score=37.38 Aligned_cols=265 Identities=14% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccC--CChHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 367 IEVENLWDAAVSKMCSVLEDQFSRM--QTANHLLLIKDYVSLLGVTLRRYGYPIDALLDVLSKHRDKYHELLLSDCRKQI 444 (804)
Q Consensus 367 ~~vdelWe~~~~kl~~~l~~~l~~~--~~~~~ll~iK~~i~lf~~tl~~ygy~v~~L~~~L~~l~d~Y~~lL~~~~~~~f 444 (804)
..+...=+.+..|+...+...+... ++++. ...|-.+|....=...-+..+|..+-.-=...|..+|-..+
T Consensus 158 ~~~~~~~e~a~erl~~w~q~e~~~l~~~~~~~-------~~~l~~al~~L~~rp~lf~~~l~~~~~~R~~~l~~~F~~aL 230 (618)
T PF06419_consen 158 EQMSKYLERAYERLYRWVQRECRSLNLDNPEV-------SPLLRRALRYLRERPVLFNYCLDEFAEARSKALLRRFLDAL 230 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCccc-------chHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhCCC-cccccC--CHHHHhc-hhccccCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHhh----cCCcc
Q 041288 445 TEALAADKF-EQMLMK--KEYEYSM-NVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMS----YGGHL 516 (804)
Q Consensus 445 ~~il~~D~y-~Pm~V~--~~eey~~-~v~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~~~f~~----~~~~~ 516 (804)
..--..-.. .||.+. |+--|=. ...|-+---+.+ |.|+...+++-+ .+...
T Consensus 231 t~g~~~~~~~rPIel~AhDP~RYvGDmLAwvHq~~a~E---------------------~E~l~~Lf~~~~~~~~~~~~~ 289 (618)
T PF06419_consen 231 TRGGPGGSPSRPIELHAHDPLRYVGDMLAWVHQAIASE---------------------REFLESLFKFDEDEIAEGSSS 289 (618)
T ss_pred cCCCCCCCCCCchhhhccChHHHHHHHHHHHHHHhhhH---------------------HHHHHHHhccccccccccccc
Q ss_pred cHH------HHHHHHHHHHHHHHHHHHHHHHhhccCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCchhhhccccc
Q 041288 517 EFF------DVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMAERSRRQ 590 (804)
Q Consensus 517 ~~d------~~v~ks~d~lL~~~v~~~L~~~i~~~~~~l~qi~Qi~iNl~~le~ac~~~e~~~~~~~g~~~~~~~~~~~~ 590 (804)
.++ +.+.+.+|+.+ ..||..++.+|.+--.+-+-.+-+.-=..-|. +|..-..++.|....+.
T Consensus 290 ~~~~~~~~~~~~~~lld~i~-~~l~rplk~RvEQvi~se~~~i~~yki~~LL~----fY~~~~~k~i~~~s~L~------ 358 (618)
T PF06419_consen 290 GFDSNPWSEELINELLDRIL-EGLCRPLKIRVEQVISSEEDPITLYKIANLLS----FYQMTFSKLIGEDSSLI------ 358 (618)
T ss_pred ccccccchHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcCCCccHHHHHHHHHH----HHHHHHHHHcCCCchHH------
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHhhhhhccccccCCCC--CcchhHHHHHHHHHHHHHH--HhhhCCHHHHH--HHH
Q 041288 591 FPLTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQ--NGNEYVNEVIIYLETLVST--AQQILPAQVLR--RVL 664 (804)
Q Consensus 591 ~~f~~~r~~Ae~~I~~lv~~KIdd~le~~~~yDW~~~~~~~--~~s~yi~dli~fL~~~f~s--~~~~LP~~v~~--~~~ 664 (804)
.++++.++.|.++++..++.+++.+... .+..|+. .|.+++.|.+.-|.-+|++ . +..|.+..+ .-+
T Consensus 359 ~tl~~L~~~a~~~f~~~l~~~~~~l~~~------~~~~~~~DL~PP~~l~d~l~~L~~il~~~~~-s~~~~~~~~~~~~~ 431 (618)
T PF06419_consen 359 ETLKELQDLAQKKFFSSLRDHVAKLLRS------APEPPPADLSPPEWLIDFLSLLREILDVYDS-SLSPDDDRENDNDF 431 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh------CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhc-ccCCccchhhhhHH
Q ss_pred HHHHHHHHHHHHh
Q 041288 665 QDVLSHISETIVG 677 (804)
Q Consensus 665 ~~a~~his~~ll~ 677 (804)
...++.+-+-++.
T Consensus 432 ~~Il~~~idpll~ 444 (618)
T PF06419_consen 432 KPILDEPIDPLLQ 444 (618)
T ss_pred HHHHHHHhHHHHH
No 27
>PF14923 CCDC142: Coiled-coil protein 142
Probab=76.98 E-value=37 Score=39.35 Aligned_cols=84 Identities=17% Similarity=0.299 Sum_probs=69.6
Q ss_pred cccccC---CCCCcchhHHHHHHHH-HHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhcccCCcccccCHHHHHhHHHH
Q 041288 623 NWMADE---PLQNGNEYVNEVIIYL-ETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVD 698 (804)
Q Consensus 623 DW~~~~---~~~~~s~yi~dli~fL-~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~D 698 (804)
=|.... .|..||+|+...+.-+ .-++..+ .+||++..-.+..-++.-+.++-|+.++-.. -+||..|..|+..|
T Consensus 261 ~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~-q~L~~~aq~~~l~~~l~a~~eAWLdhIl~~k-IKFS~~GAlQL~~D 338 (450)
T PF14923_consen 261 YWRRSLSPELPSAPSEYVEYVVETVLEPVLQGV-QGLPPEAQIPALSQALTAMLEAWLDHILMHK-IKFSLQGALQLRQD 338 (450)
T ss_pred hhcccCCCCCCCCccHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHcc-ceeeHHHHHHHHHH
Confidence 376654 3569999999887765 3445544 7899999999999999999999999888554 56999999999999
Q ss_pred HHHHHHHhhh
Q 041288 699 IRLLESFADN 708 (804)
Q Consensus 699 v~~le~fa~~ 708 (804)
..+..+++.+
T Consensus 339 F~~Vr~wl~~ 348 (450)
T PF14923_consen 339 FGYVRDWLES 348 (450)
T ss_pred HHHHHHHHHh
Confidence 9999999998
No 28
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=74.34 E-value=7.1 Score=37.68 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhhchhhHHHhhHHHH
Q 041288 146 KLMELCSRANHHLSNNNFYMALKCTDAL 173 (804)
Q Consensus 146 ~VLel~~k~~e~i~~kkyy~ALktLd~L 173 (804)
.+.+....+.+++..|+||+|||.+-.|
T Consensus 92 ~~~~~l~~i~~~V~~g~~y~ALk~lR~L 119 (132)
T PRK00794 92 DILAGLKAIDELVEAGRYYEALKALRGL 119 (132)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHh
Confidence 3458888899999999999999998766
No 29
>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=70.39 E-value=6.7 Score=37.77 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhchhhHHHhhHHHH
Q 041288 147 LMELCSRANHHLSNNNFYMALKCTDAL 173 (804)
Q Consensus 147 VLel~~k~~e~i~~kkyy~ALktLd~L 173 (804)
+.+....+.++|..|+||.|||.+-.|
T Consensus 90 ~~~~l~~~~~~v~~g~~Y~ALK~~R~L 116 (131)
T PRK12791 90 AWPIIEAINNHILNGDLYKALKELRKL 116 (131)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 566777788899999999999998776
No 30
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=68.85 E-value=13 Score=35.69 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhhchhhHHHhhHHHH
Q 041288 144 CVKLMELCSRANHHLSNNNFYMALKCTDAL 173 (804)
Q Consensus 144 cl~VLel~~k~~e~i~~kkyy~ALktLd~L 173 (804)
.-.+.+....+.+++..|+||.|||.+-.|
T Consensus 88 ~p~~~~~l~~~~~~v~~g~~y~ALk~~R~L 117 (126)
T PF07378_consen 88 DPDAREGLDEANELVEAGRYYKALKALRKL 117 (126)
T ss_pred CHHHHHHHHHHHHHHHCCcHHHHHHHHHHh
Confidence 445778888999999999999999998766
No 31
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.91 E-value=15 Score=42.40 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=80.6
Q ss_pred HHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 60 LRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALK 139 (804)
Q Consensus 60 L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~ 139 (804)
+-+-|+.-|.+.+.+--.||..|+.+.|++.+|+++--.+-++.-++.+.+......-..-.-.|.+.|..-.....+-.
T Consensus 58 MV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~ms~i~~~s~~l~g~L~ekre~I~kLg~~~~ 137 (636)
T KOG2346|consen 58 MVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEVMSSIQSKSDGLAGSLFEKRELIKKLGQRPP 137 (636)
T ss_pred HHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHHHHHHhhhhccccchhHHhHHHHHHhcCCcc
Confidence 44557888999999999999999999999999999988888876666655543221111111223333444444455556
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhHHHhhHH
Q 041288 140 SIVSCVKLMELCSRANHHLSNNNFYMALKCTD 171 (804)
Q Consensus 140 ~L~~cl~VLel~~k~~e~i~~kkyy~ALktLd 171 (804)
.+++..-+.++-.++..-++.+.|=.|+|---
T Consensus 138 llrkvqfifdLP~rLrkc~~~~aYG~avR~~~ 169 (636)
T KOG2346|consen 138 LLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSS 169 (636)
T ss_pred chhhhHHHhhhHHHHHHhccccccchhhcccc
Confidence 67788888999999999999999999988643
No 32
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=57.75 E-value=1.9e+02 Score=28.02 Aligned_cols=99 Identities=9% Similarity=0.257 Sum_probs=74.0
Q ss_pred hHHHHHHHhcC--ChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHH
Q 041288 41 GPFVRKAFASG--KPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLL 118 (804)
Q Consensus 41 ~piik~~~~~~--~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~ 118 (804)
-||+|.++... +....+++|+. ..+-++|...-+-|..|.+. |-.+=..|.+.+.+.+..+-.....+.
T Consensus 3 lPilr~~l~~~~~rd~~~leklds------~~~l~Lc~R~Q~HL~~cA~~---Va~~Q~~L~~riKevd~~~~~l~~~~~ 73 (131)
T PF10158_consen 3 LPILRGSLNLPDSRDPEVLEKLDS------RPVLRLCSRYQEHLNQCAEA---VAFDQNALAKRIKEVDQEIAKLLQQMV 73 (131)
T ss_pred cccchhhcCCCCCCChHHHHccCh------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888887654 33345555554 46788998876666666654 445667788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 119 ASLDSYVEAQTISKNIDLALKSIVSCVKLM 148 (804)
Q Consensus 119 ~kk~~L~~~r~v~~NI~eai~~L~~cl~VL 148 (804)
++++.+-+.-..-..|++-...|+.|--.|
T Consensus 74 erqk~~~k~ae~L~kv~els~~L~~~~~lL 103 (131)
T PF10158_consen 74 ERQKRFAKFAEQLEKVNELSQQLSRCQSLL 103 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888887644
No 33
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=57.50 E-value=4.1e+02 Score=31.91 Aligned_cols=169 Identities=17% Similarity=0.209 Sum_probs=122.5
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHh---------HHHHHHHHH
Q 041288 52 KPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSV---------AGPLLASLD 122 (804)
Q Consensus 52 ~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s---------~~~L~~kk~ 122 (804)
+++.-+.-|+.|....+... +=-..-|+.+-..-++|...++...+...++.-+..++++- =.+|...++
T Consensus 137 ~~~~~r~lLD~f~~~~~~~~-~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~ 215 (557)
T COG0497 137 KPELQRQLLDAFAGLEELAQ-EAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERK 215 (557)
T ss_pred ChHHHHHHHHHhcCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44556677999988777666 22345677888888889999999988888888888888876 468999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh-----hchhhHHHhhHHH-------HH---hhhcCCCC--
Q 041288 123 SYVEAQTISKNIDLALKSIVS---CVKLMELCSRANHHLS-----NNNFYMALKCTDA-------LE---SEFSDKAP-- 182 (804)
Q Consensus 123 ~L~~~r~v~~NI~eai~~L~~---cl~VLel~~k~~e~i~-----~kkyy~ALktLd~-------Le---~~~L~~v~-- 182 (804)
.|.+.-++...+..|.++|.. -..+++...++.+.+. .++|=++...|++ .- +.|+..++
T Consensus 216 rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~D 295 (557)
T COG0497 216 RLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFD 295 (557)
T ss_pred HHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999973 3567777777777775 4455555544442 11 13455543
Q ss_pred chHHHHHHHhhchhHHHHHHHH--HHHHHHHHHHHHHHhhHH
Q 041288 183 SSTLKRMLEKKTPSIRSYIERK--VNKEFGDWLVEIRVVSRN 222 (804)
Q Consensus 183 ~~~f~~~i~~sIP~lr~~Ik~~--~~~~l~~WL~~IR~~s~~ 222 (804)
..++.+ +..++-.++...++- ...++-.|...+.+--..
T Consensus 296 p~~L~~-ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~ 336 (557)
T COG0497 296 PNRLEE-VEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQ 336 (557)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 356666 888888888888876 356777887766665433
No 34
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=53.32 E-value=1.1e+02 Score=26.90 Aligned_cols=64 Identities=6% Similarity=0.118 Sum_probs=48.5
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhhHH
Q 041288 98 SLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTD 171 (804)
Q Consensus 98 ~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALktLd 171 (804)
++..-|..++..|+.++.. ..++++.+..|...|..-.++|..+...+++|-...|.++-.-..
T Consensus 12 ~IN~~ie~~~~~L~~a~~~----------~~~v~~~~~~t~~LLd~w~~IlSQte~~~~Ll~dp~W~g~~~d~~ 75 (78)
T PF08651_consen 12 KINPVIEGLIETLRSAKSN----------MNRVQETVESTNTLLDKWIRILSQTEHTQRLLLDPEWQGASDDIA 75 (78)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCcchhhh
Confidence 3444445555555555433 378899999999999999999999999999999999988755433
No 35
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=49.70 E-value=5.3e+02 Score=30.91 Aligned_cols=170 Identities=16% Similarity=0.197 Sum_probs=110.3
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHh---------HHHHHHHHH
Q 041288 52 KPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSV---------AGPLLASLD 122 (804)
Q Consensus 52 ~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s---------~~~L~~kk~ 122 (804)
+++.-++-|+.|+.- .+..+-....|+++-..-.+|...+....++..++..+..++++- =.+|-...+
T Consensus 142 ~~~~~~~lLD~~~~~--~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~ 219 (563)
T TIGR00634 142 RPDEQRQLLDTFAGA--NEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQ 219 (563)
T ss_pred CHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHH
Confidence 344555667777763 245555556699999999999999999999998888888777665 456888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHhhhchhhHHH-----------hhHHHHHh---hhcCCCC-
Q 041288 123 SYVEAQTISKNIDLALKSIVSC----V-KLMELCSRANHHLSNNNFYMAL-----------KCTDALES---EFSDKAP- 182 (804)
Q Consensus 123 ~L~~~r~v~~NI~eai~~L~~c----l-~VLel~~k~~e~i~~kkyy~AL-----------ktLd~Le~---~~L~~v~- 182 (804)
.|.+..++..++..+...|..- - .+++....+...+..- |-+++ -.|+++.. .|+..+.
T Consensus 220 ~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~-~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~ 298 (563)
T TIGR00634 220 RLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASV-IDGSLRELAEQVGNALTEVEEATRELQNYLDELEF 298 (563)
T ss_pred HHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHh-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999888542 1 2555555555555442 33232 22332222 2334432
Q ss_pred -chHHHHHHHhhchhHHHHHHHH--HHHHHHHHHHHHHHhhHHHHH
Q 041288 183 -SSTLKRMLEKKTPSIRSYIERK--VNKEFGDWLVEIRVVSRNLGQ 225 (804)
Q Consensus 183 -~~~f~~~i~~sIP~lr~~Ik~~--~~~~l~~WL~~IR~~s~~IG~ 225 (804)
..++.. |..++-.++...++. ...++.+|+..+++....+..
T Consensus 299 dp~~L~e-le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~ 343 (563)
T TIGR00634 299 DPERLNE-IEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDD 343 (563)
T ss_pred CHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhC
Confidence 334555 777777666655554 455666777666666554433
No 36
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=45.99 E-value=6.6e+02 Score=32.78 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHhhHHHHHHHhhhhh---hHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 041288 51 GKPETLLQHLRQFSRSKESEIEEVCKAHY---QDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEA 127 (804)
Q Consensus 51 ~~~~~ll~~L~~~i~~ke~eIE~iC~~~y---q~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~ 127 (804)
+...+-|+.-+.-++.-...|+++=+.-+ .--.++-.++..+-.-..+||.+..+...+-..+.+..-+.+.+-.++
T Consensus 1580 ~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a 1659 (1758)
T KOG0994|consen 1580 GEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSA 1659 (1758)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhch--hhHH---HhhHHHHHhhhcCC---CCchH--HHHHHHh
Q 041288 128 QTISKNIDLALKSIVSCVK-----LMELCSRANHHLSNNN--FYMA---LKCTDALESEFSDK---APSST--LKRMLEK 192 (804)
Q Consensus 128 r~v~~NI~eai~~L~~cl~-----VLel~~k~~e~i~~kk--yy~A---LktLd~Le~~~L~~---v~~~~--f~~~i~~ 192 (804)
+...+++.+..++...-+. ....=.|++.+-.+.+ ++.| |+-|++||..|+.+ +..+. ++. +.+
T Consensus 1660 ~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~-Le~ 1738 (1758)
T KOG0994|consen 1660 EQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAG-LEK 1738 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-HHH
Q ss_pred hchhHHHHHHHHH
Q 041288 193 KTPSIRSYIERKV 205 (804)
Q Consensus 193 sIP~lr~~Ik~~~ 205 (804)
.+-.+...|++.+
T Consensus 1739 r~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1739 RVESVLDHINERV 1751 (1758)
T ss_pred HHHHHHHHHhhhh
No 37
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.25 E-value=9.3e+02 Score=32.18 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHh---hHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHH-HHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q 041288 54 ETLLQHLRQFSRS---KESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLK-SALSDSNSKLQSVAGPLLASLDSYVEAQT 129 (804)
Q Consensus 54 ~~ll~~L~~~i~~---ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~-~~l~~~n~~lq~s~~~L~~kk~~L~~~r~ 129 (804)
+.|+..|+..++. +..++++... ......+.+..+...-....++. .++..+...+++...++....++|-+...
T Consensus 694 ~~f~~~L~~~~~~~p~~~~~~~~~~~-~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~ 772 (1311)
T TIGR00606 694 QEFISDLQSKLRLAPDKLKSTESELK-KKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQET 772 (1311)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999988887 4666666655 55666666666655556666665 67888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhhHHHHHhhh
Q 041288 130 ISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEF 177 (804)
Q Consensus 130 v~~NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALktLd~Le~~~ 177 (804)
....+.+-++.+..+++-+..+.++...+..-+ +.|++|+...
T Consensus 773 ~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~-----~qie~l~~~l 815 (1311)
T TIGR00606 773 LLGTIMPEEESAKVCLTDVTIMERFQMELKDVE-----RKIAQQAAKL 815 (1311)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 888888888888888887777777777665433 5666665544
No 38
>PRK10869 recombination and repair protein; Provisional
Probab=42.20 E-value=6.8e+02 Score=30.03 Aligned_cols=170 Identities=14% Similarity=0.148 Sum_probs=105.2
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHh---------HHHHHHHHH
Q 041288 52 KPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSV---------AGPLLASLD 122 (804)
Q Consensus 52 ~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s---------~~~L~~kk~ 122 (804)
+++.-+.-|+.|+.. .+.-+=....|+.+-....+|..++....+...++.-+..++.+- =.+|-...+
T Consensus 138 ~~~~~~~lLD~~~~~--~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~ 215 (553)
T PRK10869 138 KPEHQKTLLDAYANE--TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYK 215 (553)
T ss_pred CHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 445556667777765 345555567889999999999999998888888887777777665 467888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHhhh-chhhHH-----------HhhHHHHHh---hhcCC--CCc
Q 041288 123 SYVEAQTISKNIDLALKSIVS-C-VKLMELCSRANHHLSN-NNFYMA-----------LKCTDALES---EFSDK--APS 183 (804)
Q Consensus 123 ~L~~~r~v~~NI~eai~~L~~-c-l~VLel~~k~~e~i~~-kkyy~A-----------LktLd~Le~---~~L~~--v~~ 183 (804)
.|.+..++...+..+.+.|.. . -.+++..+.+...+.+ .+|-+. .-.|+++.. .|+.. +..
T Consensus 216 ~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp 295 (553)
T PRK10869 216 RLANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDP 295 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Confidence 999999999999988888843 1 1234333333333211 122222 222222222 23333 334
Q ss_pred hHHHHHHHhhchhHHHHHHHH--HHHHHHHHHHHHHHhhHHHH
Q 041288 184 STLKRMLEKKTPSIRSYIERK--VNKEFGDWLVEIRVVSRNLG 224 (804)
Q Consensus 184 ~~f~~~i~~sIP~lr~~Ik~~--~~~~l~~WL~~IR~~s~~IG 224 (804)
.++.+ |++++-.++.--++- ...++-+|...+++....+.
T Consensus 296 ~~l~~-ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 296 NRLAE-LEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLD 337 (553)
T ss_pred HHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 44544 777777776665554 34566666666666554443
No 39
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=42.20 E-value=3.2e+02 Score=26.15 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041288 56 LLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNID 135 (804)
Q Consensus 56 ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~ 135 (804)
=-..+.+-+++-...|+.+-..=++.....-+.|+.==.+..++.+-+..++.+++.--..+-.=+.+.++=...-.+..
T Consensus 27 ~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~ 106 (132)
T PF10392_consen 27 SELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLT 106 (132)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34457788888889999999888888899999999988888999888888888877777777666888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 041288 136 LALKSIVSCVKLMELCSRANHHLS 159 (804)
Q Consensus 136 eai~~L~~cl~VLel~~k~~e~i~ 159 (804)
.+.+-|+.+..+|.-+.++-.+++
T Consensus 107 ~~L~rl~~t~~LLR~~~r~l~L~~ 130 (132)
T PF10392_consen 107 SQLERLHQTSDLLRSVSRFLQLVR 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888877765
No 40
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=39.57 E-value=2.4e+02 Score=26.06 Aligned_cols=65 Identities=23% Similarity=0.197 Sum_probs=45.9
Q ss_pred HHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 60 LRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALK 139 (804)
Q Consensus 60 L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~ 139 (804)
|...|.+|.+|.|.+| .+|.-+..|..++.++...+..-...--.-..-+-+...|-+-|+-|.-
T Consensus 2 l~~ri~eKk~ELe~L~---------------~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~r~Is~AS~ 66 (103)
T PF08654_consen 2 LQARIAEKKAELEALK---------------QLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVFRAISMASL 66 (103)
T ss_pred HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHHHHHHh
Confidence 6778899999988765 5788888999998888888776644444445555566666655555543
No 41
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=38.83 E-value=5.4e+02 Score=27.88 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=34.8
Q ss_pred CCCcccCCCCchHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHH
Q 041288 481 AFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGHLEFFDVVKKYLDRLLGE 532 (804)
Q Consensus 481 ~fP~~lPFS~~vP~~c~~ir~fi~~~~~f~~~~~~~~~d~~v~ks~d~lL~~ 532 (804)
..|--.|++.+.-.+...|+.+-.-+..+++ .+.+.+.+.++.++..
T Consensus 185 elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~-----~V~~~l~~i~~~~~~~ 231 (295)
T PF01031_consen 185 ELPGFVPESAFESLIRKQIEKLEEPALQCVE-----EVHEELQRIVEQVLEK 231 (295)
T ss_dssp SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHH-----HHHHHHHHHHHHHHCH
T ss_pred ccccchhHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHhhcch
Confidence 5777789999988888888888888888886 6666666666655544
No 42
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=38.28 E-value=2.3e+02 Score=23.39 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=38.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 87 DDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDL 136 (804)
Q Consensus 87 ~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~e 136 (804)
..+..+..+...|+.++.++.++++....++...++|--.+..--.||..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~ 52 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 45667788888999999999999999888888888877666655555543
No 43
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=36.22 E-value=2.2e+02 Score=25.44 Aligned_cols=56 Identities=20% Similarity=0.450 Sum_probs=33.2
Q ss_pred HHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Q 041288 88 DLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMAL 167 (804)
Q Consensus 88 ~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~AL 167 (804)
++.++.++...|+.++.++.+.++.........++ =.+|.++.|-+..||-.|
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~---------------------------EA~RAN~RiDN~~~~~~~ 77 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKS---------------------------EANRANTRLDAQDYFDCL 77 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHhhhhHHHHHHH
Confidence 45555666666666666666666665555444443 345666666666666666
Q ss_pred hhH
Q 041288 168 KCT 170 (804)
Q Consensus 168 ktL 170 (804)
|-|
T Consensus 78 ~~~ 80 (85)
T PRK09973 78 RCL 80 (85)
T ss_pred HHH
Confidence 655
No 44
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=35.58 E-value=3.7e+02 Score=25.95 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhcc-cC------------------------CcccccCH
Q 041288 635 EYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAV-YG------------------------DSVKRFNI 689 (804)
Q Consensus 635 ~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~L-l~------------------------~~vk~in~ 689 (804)
+.|.-|..||+..++.+-.+|...+...+....++++-..+-+++ +- ..-+..++
T Consensus 2 ~ai~PL~dyLd~nL~~L~~~L~~~~f~~vl~~lW~~vl~~l~~llvlP~ls~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 81 (137)
T PF10540_consen 2 DAIEPLMDYLDSNLSILASNLEKENFKRVLKELWKVVLETLEELLVLPPLSDKPMLGLLQSAVSSLSSHGIGGSQRPLTP 81 (137)
T ss_dssp HHHHHHHHHHCHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHTTS-G------------GG-TTS-------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHhhcccccCCCCCH
Confidence 457789999999999998999999999999999999999999988 31 12234445
Q ss_pred HHHHhHHHHHHHHHHHhhhhCCCCCCC-ChhhH--HHHHHHHHHHHHhh
Q 041288 690 NAIMGIDVDIRLLESFADNLAPLFTDG-DANQL--KTALAESRQLVNLL 735 (804)
Q Consensus 690 ~al~n~~~Dv~~le~fa~~~~~~~~~~-~~~~L--~~~F~ELrQlidLl 735 (804)
.-...+..=++.|.+|--+. |.| +-..| ...+-+|+..+.+-
T Consensus 82 ~q~~~l~~~L~~L~~FFhA~----G~Gl~~~~L~ks~~yq~L~~~l~ly 126 (137)
T PF10540_consen 82 KQCDRLFKWLDTLKDFFHAE----GNGLPLEFLEKSPEYQSLRYILSLY 126 (137)
T ss_dssp TCHHHHHHHHHHHHHHHHCC----CTS--HHHHHC-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCC----CCCCCHHHHccCHHHHHHHHHHHHh
Confidence 55566666666666665542 321 12333 33444565555543
No 45
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=35.37 E-value=3.1e+02 Score=24.60 Aligned_cols=53 Identities=8% Similarity=0.246 Sum_probs=31.9
Q ss_pred HHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 88 DLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCS 152 (804)
Q Consensus 88 ~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~~L~~cl~VLel~~ 152 (804)
+...+.....++.+.+.......+.+-.+-...-+.| .||+ -=.||+-|.+|.
T Consensus 32 ~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri-------DN~~-----~~~~~~~~~~~~ 84 (85)
T PRK09973 32 NVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL-------DAQD-----YFDCLRCLRMYA 84 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHH-----HHHHHHHHHHhc
Confidence 4455667777777777777777777766655443322 2332 235777666653
No 46
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=34.69 E-value=4.9e+02 Score=26.15 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 041288 57 LQHLRQFSRSKESEIEEV 74 (804)
Q Consensus 57 l~~L~~~i~~ke~eIE~i 74 (804)
+..++.++.+.+.+++.+
T Consensus 97 l~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 97 LDQLQERIQELESELEKL 114 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555544444
No 47
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=34.44 E-value=42 Score=32.07 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhhchhhHHHhhHHHH
Q 041288 147 LMELCSRANHHLSNNNFYMALKCTDAL 173 (804)
Q Consensus 147 VLel~~k~~e~i~~kkyy~ALktLd~L 173 (804)
||.-+.++..++.+++||.|||++--|
T Consensus 94 il~~lk~Id~lV~~~~~feALkaiR~l 120 (148)
T COG5443 94 ILAALKRIDGLVMAGRAFEALKAIRGL 120 (148)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence 666777888999999999999988655
No 48
>PF07072 DUF1342: Protein of unknown function (DUF1342); InterPro: IPR009777 This family consists of several hypothetical bacterial proteins of around 250 residues in length. Members of this family are often known as YacF after the Escherichia coli protein P36680 from SWISSPROT. The function of this family is unknown.; PDB: 2OEZ_A.
Probab=34.26 E-value=94 Score=32.48 Aligned_cols=141 Identities=18% Similarity=0.244 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH---
Q 041288 54 ETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTI--- 130 (804)
Q Consensus 54 ~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v--- 130 (804)
+.+.++++.++...+ ...|.-|..+.=+++.|-+.++ +|.+|... |-..+..|...+..
T Consensus 4 E~Lf~ql~~~~~~~~-------~~~~~~al~~Lfellev~~R~D-lK~eLlKE----------LeRq~~~L~~~~~~p~v 65 (211)
T PF07072_consen 4 EYLFQQLNHFLAQDS-------PWDHHAALRALFELLEVLERAD-LKSELLKE----------LERQRQKLNQWRDNPGV 65 (211)
T ss_dssp HHHHHHHHHHTT--S-------TTHHHHHHHHHHHHHHHHCCS--HHHHHHHH----------HHHHHHHHHCTTT-TTS
T ss_pred HHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHHHhhhhHH-HHHHHHHH----------HHHHHHHHHHHhcCCCC
Confidence 345555555554333 2567889999999999988776 88875432 22223333322222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhchhhHHHhhHHHHHhhhcCC----CCchHHHHHHHhhchhHHHHHHHH
Q 041288 131 -SKNIDLALKSIVSCVKLMELCS-RANHHLSNNNFYMALKCTDALESEFSDK----APSSTLKRMLEKKTPSIRSYIERK 204 (804)
Q Consensus 131 -~~NI~eai~~L~~cl~VLel~~-k~~e~i~~kkyy~ALktLd~Le~~~L~~----v~~~~f~~~i~~sIP~lr~~Ik~~ 204 (804)
...+++.+..|..+...|.-++ |+...+++.+|..++|. +...|. .....+--+++..-..=
T Consensus 66 d~~~l~~~l~~l~~~~~~L~~~~gr~gq~Lrene~L~siRQ-----R~~iPGG~C~FDLP~yh~Wl~qp~~~R------- 133 (211)
T PF07072_consen 66 DQEALDALLQELDQALQALQQAPGRIGQHLRENEFLMSIRQ-----RFSIPGGTCSFDLPSYHYWLHQPPEQR------- 133 (211)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH---STTHHHHC-HHHHHHHH-----HHCSS----GCC-HHHHHHHTS-HHHH-------
T ss_pred CHHHHHHHHHHHHHHHHHHHhCcchhhhhhhHhHHHHHHHH-----HccCCCCcCCCCcHHHHHHHCCCHHHH-------
Confidence 3456777888888999888888 99999999999999995 444454 12223334444332211
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q 041288 205 VNKEFGDWLVEIRVVSRNLGQ 225 (804)
Q Consensus 205 ~~~~l~~WL~~IR~~s~~IG~ 225 (804)
..+++.|+..+.-....|.-
T Consensus 134 -~~~l~~W~~~l~pl~~ai~l 153 (211)
T PF07072_consen 134 -QQDLQQWLEPLAPLRDAITL 153 (211)
T ss_dssp -HHHHHHHHHTTHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 24667898766555444433
No 49
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=32.38 E-value=4.9e+02 Score=25.48 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 81 DFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLME 149 (804)
Q Consensus 81 ~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~~L~~cl~VLe 149 (804)
.|.+--++|-.++..++.|++.|.++...|+.+......-..+.=+++++...+.+=++.+..-+.-|+
T Consensus 4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~ 72 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLE 72 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778899999999999999999999999999888877777777777777777777776666655544
No 50
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=31.22 E-value=6.6e+02 Score=27.22 Aligned_cols=100 Identities=14% Similarity=0.216 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhc--hhhHHHhhHHH
Q 041288 96 VDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVK-LMELCSRANHHLSNN--NFYMALKCTDA 172 (804)
Q Consensus 96 ~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~~L~~cl~-VLel~~k~~e~i~~k--kyy~ALktLd~ 172 (804)
+..++.++-.+-.....-+.++-.+|.+|-..|+- .++|++.-| -.+=|.+|.+-+++- .||--+++|+-
T Consensus 121 ~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkR-------le~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~y 193 (338)
T KOG3647|consen 121 LQSSRAQLNNVASDEAALGSKIERRKAELERTRKR-------LEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDY 193 (338)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33444444444444445566666677777666543 456666555 467788999988764 79999999999
Q ss_pred HHhhhcC--CCCchHHHHHHHhhchhHHHHHHH
Q 041288 173 LESEFSD--KAPSSTLKRMLEKKTPSIRSYIER 203 (804)
Q Consensus 173 Le~~~L~--~v~~~~f~~~i~~sIP~lr~~Ik~ 203 (804)
|++.|-. +..+-+|-. ..+++|.+.+..++
T Consensus 194 L~~qldd~~rse~~rqee-aensm~~i~ekl~e 225 (338)
T KOG3647|consen 194 LKSQLDDRTRSEPIRQEE-AENSMPFIPEKLIE 225 (338)
T ss_pred HHHHHHHHhhhhHHHHHH-HHhcchhhHHHhhh
Confidence 9887643 233334444 66777776665554
No 51
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.65 E-value=1.1e+03 Score=28.63 Aligned_cols=66 Identities=9% Similarity=0.146 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHH--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 79 YQDFILAVDDLRSLLSDVDSLKSALSDS--NSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSC 144 (804)
Q Consensus 79 yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~--n~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~~L~~c 144 (804)
...+...++++..+.....++..+|... +..++.--..+-.-.+++-+++.-...+.+-++.++..
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 457 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEA 457 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666543 23333333333333344444433333333333333333
No 52
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.38 E-value=5.7e+02 Score=27.50 Aligned_cols=108 Identities=14% Similarity=0.078 Sum_probs=69.3
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHH-------
Q 041288 67 KESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNI--DLA------- 137 (804)
Q Consensus 67 ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI--~ea------- 137 (804)
+-..+|++.+.+-+...+=..+|..++.+..+|+++|.+.+-+|+..-+.-..--.+|=+ | . +.+ .++
T Consensus 41 r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~-r-~-~~~~~~~~~~~~~~~ 117 (263)
T PRK10803 41 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS-L-S-SGGAAAQSTSGDQSG 117 (263)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-H-H-hccccCCcccccccc
Confidence 335788888888888888889999999999999999998888887764433222222211 1 0 111 000
Q ss_pred -----H--------H--HHHHHHHHHHHHHHHHHH-hhhchhhHHHhhHHHHHhhh
Q 041288 138 -----L--------K--SIVSCVKLMELCSRANHH-LSNNNFYMALKCTDALESEF 177 (804)
Q Consensus 138 -----i--------~--~L~~cl~VLel~~k~~e~-i~~kkyy~ALktLd~Le~~~ 177 (804)
. . .-..-..--..|..+..+ +++|+|-.|+..++.+-+.|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y 173 (263)
T PRK10803 118 AAASATPAADAGTANAGAPVQSGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY 173 (263)
T ss_pred CCCccccccCcccccccCCCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 0 0 000000124567787887 56789999999999887777
No 53
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.18 E-value=1.1e+03 Score=27.69 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=25.5
Q ss_pred HHHhhhhhHHHHHHHHHHHhHHHHHh---HHHHH
Q 041288 88 DLRSLLSDVDSLKSALSDSNSKLQSV---AGPLL 118 (804)
Q Consensus 88 ~L~~Vr~~~~~L~~~l~~~n~~lq~s---~~~L~ 118 (804)
.+.+|.+++.+|+.++-.+...|+.+ +.+|+
T Consensus 404 DI~Kil~etreLqkq~ns~se~L~Rsfavtdell 437 (521)
T KOG1937|consen 404 DIVKILEETRELQKQENSESEALNRSFAVTDELL 437 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45678899999999999999999987 55554
No 54
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.90 E-value=1.2e+03 Score=28.15 Aligned_cols=107 Identities=11% Similarity=0.166 Sum_probs=83.8
Q ss_pred HHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHh---HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 60 LRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSN---SKLQSVAGPLLASLDSYVEAQTISKNIDL 136 (804)
Q Consensus 60 L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n---~~lq~s~~~L~~kk~~L~~~r~v~~NI~e 136 (804)
|.+=+..-++++.++...||-.|++..+-...+.+....-+....++. -+++....+.+..+.++.+.|+..+-+..
T Consensus 43 La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L~s~~~~f~~~~~~i~e~~~~~~~~l~ 122 (581)
T KOG2069|consen 43 LAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPELTSPCKRFQDFAEEISEHRRLNSLTLD 122 (581)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHhhhHHHHHHHHHHHhhHhHHHHHHHHh
Confidence 677788889999999999999999988888888877777666644443 35667788889999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhh
Q 041288 137 ALKSIVSCVKLMELCSRANHHLSNNNFYMALKC 169 (804)
Q Consensus 137 ai~~L~~cl~VLel~~k~~e~i~~kkyy~ALkt 169 (804)
-...+..-+.+.+++. ..|+.++|=.|+..
T Consensus 123 ~~~~l~ellelp~lM~---~cir~~~~~ealel 152 (581)
T KOG2069|consen 123 KHPQLLELLELPQLMD---RCIRNGYYDEALEL 152 (581)
T ss_pred hcchhHHHHhHHHHHH---HHHHhhhhhhHHHH
Confidence 7777766666666666 55778888777643
No 55
>PRK05287 hypothetical protein; Provisional
Probab=26.86 E-value=2.6e+02 Score=30.10 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=72.1
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH-
Q 041288 52 KPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTI- 130 (804)
Q Consensus 52 ~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v- 130 (804)
+.+.+.++++.++...+. ..|.-|..++=+|+.|-+.+ +||++|.. +|-..+..|...+..
T Consensus 20 RLE~Lf~ql~~~~~~~~~-------~~h~~~~~~Lfelldv~~R~-DlKsdLlK----------eLerq~~~L~~~~~~p 81 (250)
T PRK05287 20 RLEFLFQQLTFNLAQDDP-------ADHHVAFRTLFELLDVLERG-DLKSDLLK----------ELERQRQKLQKWRGNP 81 (250)
T ss_pred HHHHHHHHHHHHhcCCcH-------HHHHHHHHHHHHHHHHhhhH-HHHHHHHH----------HHHHHHHHHHHHhcCC
Confidence 345566666666554443 23456888888888887765 57776542 344445555555544
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhh
Q 041288 131 ---SKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKC 169 (804)
Q Consensus 131 ---~~NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALkt 169 (804)
...+++.++-+..|...|.-+.|.++.+++.++..|+|.
T Consensus 82 ~vd~~~l~~~l~~l~~~~~~L~~~~r~Gq~Lrede~L~siRQ 123 (250)
T PRK05287 82 GVDQEALEALLQELEQASAALNAAPRIGQSLREDRFLSSIRQ 123 (250)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHH
Confidence 467888899999999999999999999999999999995
No 56
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.68 E-value=9.7e+02 Score=30.34 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=94.2
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhcccCCcccccCHHHHHhHHHHHHHHH
Q 041288 624 WMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLE 703 (804)
Q Consensus 624 W~~~~~~~~~s~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~le 703 (804)
|.... ..+|+.-|.-|..=|.+|=..+-..||+. +..-+|..+.|++++++= =...-++++|.+|+..+-..|..+.
T Consensus 817 ~~~~~-s~e~D~~V~aL~k~l~~~e~klk~~L~e~-k~~yIFeGL~hL~s~~LI-~~a~~i~~ln~~~ikkMcRNv~~lQ 893 (982)
T KOG3691|consen 817 VNRDV-SGEPDPSVVALNKDLSTTEEKLKACLNEW-KRRYIFEGLGHLVSSILI-SGAQYIERLNEGGIKKMCRNVSALQ 893 (982)
T ss_pred ecccc-cCCCCHHHHHHHHHHHHHHHHHHhhcCHH-HHHHHHhhHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55555 67899999999988887766665677754 555667899999999863 2235579999999999999999999
Q ss_pred HHhhhhCCCCCCCChhhHHHHHHHHHHHHHhhhcCCcccccchhhh-cccCCCCChhhHHHHHH
Q 041288 704 SFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIR-ERSYNALDHRKVVTISE 766 (804)
Q Consensus 704 ~fa~~~~~~~~~~~~~~L~~~F~ELrQlidLl~s~~~e~y~~~~~R-~~kY~~v~~~~~~~lLe 766 (804)
+-...+-. .+ +..|.--|+.-+|+. +.+++.++-..- ..+|.......+..+.-
T Consensus 894 Q~Lsnit~------~r--evdld~ar~fy~ll~-nt~deile~v~d~~~qfse~e~~qllrls~ 948 (982)
T KOG3691|consen 894 QILSNITE------SR--EVDLDKARRFYELLQ-NTADEILEHVIDARKQFSEPELKQLLRLSY 948 (982)
T ss_pred HHHHhccc------cc--ccccHHHHHHHHHHh-cCHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 98887621 11 345667788888887 667776554332 35677666666666554
No 57
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=25.59 E-value=1.6e+03 Score=29.22 Aligned_cols=128 Identities=15% Similarity=0.153 Sum_probs=73.5
Q ss_pred HHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHh
Q 041288 89 LRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALK 168 (804)
Q Consensus 89 L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALk 168 (804)
+-.+.....++.+++.++...++..-+++-...+++-.-+.-...+..+|+-.+.-|+.|.-.+ -+..-+=|.+.++|
T Consensus 403 ~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k-~dkvs~FG~~m~~l- 480 (1074)
T KOG0250|consen 403 LEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTK-TDKVSAFGPNMPQL- 480 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhhcchhhHHH-
Confidence 3344555555555666666666666555555555554444444444445555555555554332 22333334555552
Q ss_pred hHHHHHhhhcC--CCCchHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHh
Q 041288 169 CTDALESEFSD--KAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVV 219 (804)
Q Consensus 169 tLd~Le~~~L~--~v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l~~WL~~IR~~ 219 (804)
|..+++.|-. ..|--.+++.|--.=|.....|+.+...-||.|++.=.+-
T Consensus 481 -L~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D 532 (1074)
T KOG0250|consen 481 -LRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKD 532 (1074)
T ss_pred -HHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhh
Confidence 4455555543 3333456776777778999999999999999998654433
No 58
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=25.34 E-value=3.4e+02 Score=27.03 Aligned_cols=101 Identities=19% Similarity=0.243 Sum_probs=47.6
Q ss_pred CCCCchhHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHH-------HhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 041288 35 GNGEDLGPFVRKAFASGKPETLLQHLRQFSRSKESEIEE-------VCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSN 107 (804)
Q Consensus 35 ~~~d~l~piik~~~~~~~~~~ll~~L~~~i~~ke~eIE~-------iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n 107 (804)
-+.+-+.++||.--++ |...|+.+...-+.+|-+ +-..--...-..+++|. ..--++..+...+.
T Consensus 23 ~~~~Ev~~aik~~sd~-----~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~---k~~Pev~~qa~~l~ 94 (155)
T PF07464_consen 23 QNQQEVVKAIKEQSDS-----VAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLR---KANPEVEKQANELQ 94 (155)
T ss_dssp --SS-SSHHHHHHHHH-----HHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGG---G-SHHHHHT-SSSH
T ss_pred CcHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH---hcChHHHHHHHHHH
Confidence 5577788888876543 556666655555555544 33333333333333333 23334444555555
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 108 SKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCV 145 (804)
Q Consensus 108 ~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~~L~~cl 145 (804)
..||++...|+..-+.+. +.+..|+.++-+.|..-+
T Consensus 95 e~lQ~~vq~l~~E~qk~~--k~v~~~~~~~~e~l~~~~ 130 (155)
T PF07464_consen 95 EKLQSAVQSLVQESQKLA--KEVSENSEGANEKLQPAI 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHS---SS-GGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHH
Confidence 556666555554444433 344555554444444443
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.90 E-value=2.4e+02 Score=34.16 Aligned_cols=75 Identities=16% Similarity=0.084 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhchhhHHHhhHHHHHhhhcCCCCchHHHHHHHhhchhHHHHHHH
Q 041288 129 TISKNIDLALKSIVSCVK-----LMELCSRANHHLSNNNFYMALKCTDALESEFSDKAPSSTLKRMLEKKTPSIRSYIER 203 (804)
Q Consensus 129 ~v~~NI~eai~~L~~cl~-----VLel~~k~~e~i~~kkyy~ALktLd~Le~~~L~~v~~~~f~~~i~~sIP~lr~~Ik~ 203 (804)
.-.+..++|+..++..+- +|-.++|.+-+..-++|-.||+.||+|+..-.++-.-|.+-..|++.+-.....++.
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 334567888888887765 789999999999999999999999999988877777776666688777666666554
No 60
>PHA02265 hypothetical protein
Probab=24.27 E-value=78 Score=27.97 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=19.9
Q ss_pred ccCchhHHHHHHHHHhcCchHHHHH
Q 041288 289 GFDLTPLYRAYHIHQTLGLEDRFKQ 313 (804)
Q Consensus 289 ~iDf~Ply~cihI~~~Lg~~e~F~~ 313 (804)
.||.+.=|.++|||..|+...++.+
T Consensus 23 ~v~~tsk~~a~~i~~~l~kfk~ls~ 47 (103)
T PHA02265 23 EVDITSKSTAIAINQILDKFKTLTE 47 (103)
T ss_pred ccccccchhHHHHHHHHHHHHHHHH
Confidence 4889999999999998876555544
No 61
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=23.40 E-value=1.4e+02 Score=36.23 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhhHHHHH
Q 041288 115 GPLLASLDSYVEAQTISKNI-DLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALE 174 (804)
Q Consensus 115 ~~L~~kk~~L~~~r~v~~NI-~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALktLd~Le 174 (804)
..++...+.+.+..+-...+ ..+......+..+|--...+.++..+|+|-.||..+++|.
T Consensus 472 ~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 472 ERLIELAKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp TSHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 44444455555444443333 2234445556777777888999999999999999999884
No 62
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=22.19 E-value=5e+02 Score=30.32 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=39.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 76 KAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCV 145 (804)
Q Consensus 76 ~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~~L~~cl 145 (804)
..|+-.|..||.++++||-+--+|.++ .....++.+.-..+ -+-+.+-+..+.-+.+=|++|..-+
T Consensus 392 R~hQRkfL~AI~~fR~Vk~~qRkl~e~-~nsl~d~aK~~~~m---yd~~~~l~~~q~~le~qI~~Le~kl 457 (489)
T KOG3684|consen 392 RKHQRKFLQAIHQFRSVKWEQRKLSEQ-ANSLVDLAKTQNDM---YDLLQELHSRQEELEKQIDTLESKL 457 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999998888877 22222332222222 2233333444445555555544433
No 63
>PF15469 Sec5: Exocyst complex component Sec5
Probab=22.14 E-value=7.6e+02 Score=24.62 Aligned_cols=46 Identities=11% Similarity=0.029 Sum_probs=28.7
Q ss_pred HHHHHHHHHhHHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHH
Q 041288 601 EEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLET 646 (804)
Q Consensus 601 e~~I~~lv~~KIdd~le~~~~yDW~~~~~~~~~s~yi~dli~fL~~ 646 (804)
...+|..|-..|+..++.+..-=|.-=..++.+.....+++.+|-.
T Consensus 122 ~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~ 167 (182)
T PF15469_consen 122 QVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLLE 167 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 4457777777777777654443465444444556667777776654
No 64
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=22.13 E-value=4e+02 Score=24.79 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHhhHHHHHhhhcCC---CC---chHHHHHHHhhchhHHHHHHH
Q 041288 141 IVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDK---AP---SSTLKRMLEKKTPSIRSYIER 203 (804)
Q Consensus 141 L~~cl~VLel~~k~~e~i~~kkyy~ALktLd~Le~~~L~~---v~---~~~f~~~i~~sIP~lr~~Ik~ 203 (804)
...|-.+.+....+.+.|+.+++=.|-+.+++|++.+=.. ++ ...=-..|..++-.++..|+.
T Consensus 22 ~~~~~~i~~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~ 90 (121)
T PF14276_consen 22 NNSTDSIEEQLEQIEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEA 90 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHC
Confidence 3568889999999999999999999999999999976322 11 112222377777777777765
No 65
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=22.11 E-value=7e+02 Score=23.85 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHhhHHHHHH----HhhhhhhHHHHHHHHHHhhhhhHH-HHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 041288 53 PETLLQHLRQFSRSKESEIEE----VCKAHYQDFILAVDDLRSLLSDVD-SLKSALSDSNSKLQSVAGPLLASLDSYVEA 127 (804)
Q Consensus 53 ~~~ll~~L~~~i~~ke~eIE~----iC~~~yq~Fi~sv~~L~~Vr~~~~-~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~ 127 (804)
+..|++.|+..++..-.-+.+ +-.......-..+++|..+++.-. .|+..+ ......+..|.-++...+-+--+
T Consensus 9 E~~y~~~L~~l~~~~~~~l~~~~~~l~~~~~~~lf~~i~~l~~~h~~ll~~L~~~~-~~~~~~~~i~~if~~~~~~~~~Y 87 (180)
T PF00621_consen 9 ERSYVEDLEILVEVFLKPLRKRSPLLSEDEIKSLFGNIEELIEIHQQLLESLEERM-KEWSNIQSIGDIFLKFEPFLKVY 87 (180)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHTTSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH-HTTSSGGGHHHHHHHHTTGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHhcchhhhhhHHHHHHHHHHHHH-Hhhhccchhhhhhhhccccccce
Confidence 456788888888777777766 344445556677788887776543 333333 33344455566666633334457
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041288 128 QTISKNIDLALKSIVSCVK 146 (804)
Q Consensus 128 r~v~~NI~eai~~L~~cl~ 146 (804)
..-..|...+...++.+..
T Consensus 88 ~~Y~~~~~~~~~~~~~~~~ 106 (180)
T PF00621_consen 88 ISYCSNYPDALSLLEELRK 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eccchheechhhhhhHHHh
Confidence 7777777777777766553
No 66
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=21.92 E-value=1.3e+03 Score=26.98 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=34.3
Q ss_pred hhHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhh
Q 041288 40 LGPFVRKAFASGKPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLL 93 (804)
Q Consensus 40 l~piik~~~~~~~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr 93 (804)
+.|++..... +...+++.++.+.++...+.+..|..=+. |...+-++...+
T Consensus 310 ~~plv~~~q~--~~e~~le~l~~~~E~~a~~~~~~~~~L~~-f~~~~~~lwd~h 360 (473)
T PF14643_consen 310 FLPLVGELQS--EFEEELEKLDKSFEELAKQTEAQSEDLFK-FFQEAAQLWDEH 360 (473)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5666665553 45578888888888888888888876554 444444554444
No 67
>PF07560 DUF1539: Domain of Unknown Function (DUF1539); InterPro: IPR011436 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR013044 from INTERPRO.
Probab=21.66 E-value=6.5e+02 Score=24.25 Aligned_cols=45 Identities=13% Similarity=0.290 Sum_probs=28.5
Q ss_pred HHhcccCCcccccCHHHHHhHHHHHHHHHHHhhhhCCCCCCCChhhHHHHHHHHHHHH
Q 041288 675 IVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLV 732 (804)
Q Consensus 675 ll~~Ll~~~vk~in~~al~n~~~Dv~~le~fa~~~~~~~~~~~~~~L~~~F~ELrQli 732 (804)
+..+|-+|.|..--.-++ +.|+.+++++|.| .=++..|-||.++-
T Consensus 72 l~~aL~dp~Is~erK~~~------l~yIaSya~~c~p-------TW~evi~rel~~iy 116 (126)
T PF07560_consen 72 LIKALQDPTISKERKREA------LNYIASYADACPP-------TWVEVIFRELNAIY 116 (126)
T ss_pred HHHHhcCCCCChHHHHHH------HHHHHHHhccCch-------hHHHHHHHHHHHHH
Confidence 444555777766554444 5688899999844 34556677766543
No 68
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=20.98 E-value=1.1e+03 Score=25.85 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhhHHH-HHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHH--HHHHHHHHHHHHHHH
Q 041288 56 LLQHLRQFSRSKESEIEEVCKAHYQDFI-LAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPL--LASLDSYVEAQTISK 132 (804)
Q Consensus 56 ll~~L~~~i~~ke~eIE~iC~~~yq~Fi-~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L--~~kk~~L~~~r~v~~ 132 (804)
..+.+-.++++-+.+++++-..-+.+-. .-+.+|..+|.....++..+...+.-++.-.+.- .-.++.-...|.+..
T Consensus 148 i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~ 227 (322)
T COG0598 148 IVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLD 227 (322)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 3444555556667777776644444322 5888999999999999999888887777765554 345666677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhhHHHHHhhhcCC
Q 041288 133 NIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDK 180 (804)
Q Consensus 133 NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALktLd~Le~~~L~~ 180 (804)
.+..+++.+....+.+.-..-+..-+-.-+-=.-+|.|--.--+.+|+
T Consensus 228 ~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPp 275 (322)
T COG0598 228 HLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPP 275 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888887776655544444444444555555555556555
No 69
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=20.68 E-value=1e+03 Score=25.09 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=49.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041288 84 LAVDDLRSLLSDVDSLKSALSDSNSKLQSVAG---PLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSN 160 (804)
Q Consensus 84 ~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~---~L~~kk~~L~~~r~v~~NI~eai~~L~~cl~VLel~~k~~e~i~~ 160 (804)
....++..+|.....++..+.....-++.... ......+.....+.+...+....+.+..+...++...........
T Consensus 148 ~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 227 (292)
T PF01544_consen 148 ELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLS 227 (292)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677776666666555543322 111122223335556666666666666666655555544444444
Q ss_pred chhhHHHhhHHHHHhhhcC
Q 041288 161 NNFYMALKCTDALESEFSD 179 (804)
Q Consensus 161 kkyy~ALktLd~Le~~~L~ 179 (804)
-+-=..+|.|--+--+.+|
T Consensus 228 ~~~n~~m~~LT~~t~iflP 246 (292)
T PF01544_consen 228 NRQNRVMKVLTIVTAIFLP 246 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4433445555555444444
Done!