Query 041288
Match_columns 804
No_of_seqs 138 out of 219
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 09:13:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a2f_X Exocyst complex compone 100.0 2.2E-80 7.6E-85 671.6 29.8 317 418-740 2-321 (325)
2 3fhn_A Protein transport prote 98.0 0.029 9.8E-07 66.1 39.2 355 336-754 274-677 (706)
3 3hr0_A COG4; conserved oligome 97.8 0.00078 2.7E-08 70.7 18.9 206 550-766 17-248 (263)
4 2fji_1 Exocyst complex compone 97.3 0.34 1.2E-05 53.6 32.1 181 592-796 182-366 (399)
5 2f6h_X Myosin-2, type V myosin 96.0 0.25 8.7E-06 55.1 18.9 130 634-772 201-331 (419)
6 3swh_A MUNC13-1, protein UNC-1 95.7 1.5 5.1E-05 47.5 22.9 105 632-739 209-328 (341)
7 3mmi_A Myosin-4; globular tail 94.3 0.8 2.7E-05 50.2 15.9 133 631-773 182-315 (386)
8 3n1e_A Vacuolar protein sortin 92.2 2.2 7.4E-05 40.3 13.1 108 593-709 17-126 (141)
9 2b1e_A Exocyst complex compone 52.6 3.1E+02 0.01 31.3 18.1 250 131-435 2-285 (564)
10 2qk2_A LP04448P; mini spindles 32.6 2.9E+02 0.0099 26.8 11.3 75 128-203 112-187 (242)
11 1zva_A E2 glycoprotein; membra 30.4 1.2E+02 0.0041 25.2 6.1 69 58-139 3-74 (77)
12 3trt_A Vimentin; cytoskeleton, 26.0 2.7E+02 0.0091 22.7 8.8 53 60-112 18-74 (77)
13 2xdj_A Uncharacterized protein 24.4 3.2E+02 0.011 23.0 9.1 51 67-117 7-57 (83)
No 1
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-80 Score=671.62 Aligned_cols=317 Identities=22% Similarity=0.376 Sum_probs=282.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccCCHHHHhchhccccCCCCCCC-CCCCcccCCCCchHHHH
Q 041288 418 IDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIV-PAFPYVAPFSSTVPDCC 496 (804)
Q Consensus 418 v~~L~~~L~~l~d~Y~~lL~~~~~~~f~~il~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~-~~fP~~lPFS~~vP~~c 496 (804)
|++|+++|+++||+|+++|+++|+++|++++++|+|+||+|+|++||++++..||+++++.. ++||++||||+|||+||
T Consensus 2 V~~L~~~L~~l~d~Y~elLl~~~~~~f~~il~~D~y~Pm~V~~~eey~~v~~~~~~~~~~~~~~~fP~~lPFS~~vP~~c 81 (325)
T 2a2f_X 2 VNILWELLHNMRDHYNEVLLQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQLENAPFPKKFPFSRMVPEVY 81 (325)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCHHHHHHHHTTSCCCCCCCC----CCCSSSBTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCHHHHHHHHhcCCCCCcccccCCCCcccCccHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999766543 68999999999999999
Q ss_pred HHHHHHHHHHHHHhhc--CCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhHHHHHHHhHHHHHHHHHHHHHHHH
Q 041288 497 RIVRSFIEDSVSFMSY--GGHLEFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAA 574 (804)
Q Consensus 497 ~~ir~fi~~~~~f~~~--~~~~~~d~~v~ks~d~lL~~~v~~~L~~~i~~~~~~l~qi~Qi~iNl~~le~ac~~~e~~~~ 574 (804)
++||+||++||.|+++ ++++++|++|||++|+||+++||++|.++|++++++++|++||+||++|||.||++|+.+++
T Consensus 82 ~~ir~fi~~~~~F~~~~~~~~~eidd~lrks~d~LL~~~v~~~L~~~i~~~~~~l~qi~Qi~iNl~~le~ac~~le~~l~ 161 (325)
T 2a2f_X 82 HQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTRSFSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVC 161 (325)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999995 45789999999999999999999999999999889999999999999999999999999999
Q ss_pred HHcCCCchhhhcccccccHHHHHHHHHHHHHHHHHhHHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHHhhh
Q 041288 575 QLSGIPLRMAERSRRQFPLTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQI 654 (804)
Q Consensus 575 ~~~g~~~~~~~~~~~~~~f~~~r~~Ae~~I~~lv~~KIdd~le~~~~yDW~~~~~~~~~s~yi~dli~fL~~~f~s~~~~ 654 (804)
+.+|.+.+.. +.++..|+++|++||++|+++|++||||||+ +++|||+|++++++||+||.|++.||+++|++ +++
T Consensus 162 ~~~~~~~~~~--l~a~~~f~~~r~~Ae~~I~~~v~~KIDdfl~-la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s-l~~ 237 (325)
T 2a2f_X 162 HMTNTERSVS--QTPSAMFHVARQDAEKQVGLRICSKIDEFFE-LSAYDWLLVEPPGIASAFITDMISYLKSTFDS-FAF 237 (325)
T ss_dssp HHHTCCC---------CCSCCCTTHHHHHHHHHHHHHHHHHHT-TCCTTCC----CCSCCHHHHHHHHHHHHHHHT-TTT
T ss_pred HHhCCCcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCCCCCCCCccHHHHHHHHHHHHHHHH-HHc
Confidence 9999876643 5688899999999999999999999999998 79999999999999999999999999999995 799
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcccCCcccccCHHHHHhHHHHHHHHHHHhhhhCCCCCCCChhhHHHHHHHHHHHHHh
Q 041288 655 LPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNL 734 (804)
Q Consensus 655 LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~le~fa~~~~~~~~~~~~~~L~~~F~ELrQlidL 734 (804)
||+++++++||+||+|||++||++|++++||+||++||+||++||+|||+||+++ |++|+ +.++|+++|+|||||+||
T Consensus 238 LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~~-~v~~l-~~~~L~~~F~eLrQli~L 315 (325)
T 2a2f_X 238 KLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAASE-PVPGL-KEGELSKYFLRNRQLLDL 315 (325)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTTC-SSSSC-CSSTTGGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHhC-CCCCc-ccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 87888 678999999999999999
Q ss_pred hhcCCc
Q 041288 735 LLSNHP 740 (804)
Q Consensus 735 l~s~~~ 740 (804)
|+++..
T Consensus 316 l~~~~~ 321 (325)
T 2a2f_X 316 LILEHH 321 (325)
T ss_dssp HHCC--
T ss_pred HHhhhc
Confidence 999864
No 2
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=98.04 E-value=0.029 Score=66.11 Aligned_cols=355 Identities=14% Similarity=0.181 Sum_probs=197.5
Q ss_pred HHHHHHHHHHhhhHH--HhhHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHhhc---cCCChHHHHHHHHHHHHHHHH
Q 041288 336 LESHQTFFAQIAGFF--IVEDRILRTGGGLISKIEVENLWDAAVSKMCSVLEDQFS---RMQTANHLLLIKDYVSLLGVT 410 (804)
Q Consensus 336 ~~~l~~yl~~I~GFF--ivE~~vl~tt~~l~s~~~vdelWe~~~~kl~~~l~~~l~---~~~~~~~ll~iK~~i~lf~~t 410 (804)
.+.+.+|++.++... +..+ +..|+ +..++ +...+..+.+.+++-+. .+.++..+-.+=.-++.|-..
T Consensus 274 f~Fl~~~lq~~L~~~~~~f~d----~~~~~-~~~~~---~~eFI~~LL~~vreKl~~~l~~~d~~lLsHlI~Ell~FD~~ 345 (706)
T 3fhn_A 274 FQFLNDYLAENLYKCINIFHD----DCNGL-TKPVI---HEQFINYVLQPIRDKVRSTLFQNDLKTLIVLISQILATDKN 345 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHCB----GGGTB-CHHHH---HHHHHHHHSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc----ccccc-chhHH---HHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHHHHHHHH
Confidence 355666666665543 1111 22233 33333 24455555555555444 127889899999999999999
Q ss_pred hh-hCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccCCHHHHhchhccccCCCCCCCCCCCcccCC
Q 041288 411 LR-RYGYPIDALLDV-LSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPF 488 (804)
Q Consensus 411 l~-~ygy~v~~L~~~-L~~l~d~Y~~lL~~~~~~~f~~il~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~~~fP~~lPF 488 (804)
|+ .|||+...|..+ ....|++.-+.=.+-..++|..|+++.+
T Consensus 346 Lr~~~~Y~~~Gl~~li~~~~f~~WL~~Ek~fA~~rf~~Ii~s~d------------------------------------ 389 (706)
T 3fhn_A 346 LLNSFHYHGLGLVSLISDEVWEKWINYEVEMANRQFINITKNPE------------------------------------ 389 (706)
T ss_dssp HHHHTCCCSCCGGGGSCHHHHHHHHHHHHHHHHHHHHHTTSSGG------------------------------------
T ss_pred HHHhcCCCCCcchhcccHHHHHHHHHHHHHHHHHHHHHHHhCCc------------------------------------
Confidence 96 499995444333 2477888887777777888998887544
Q ss_pred CCchHHHHHHHHHHHHHHHHHhh------cCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----cchh-HHHHHH
Q 041288 489 SSTVPDCCRIVRSFIEDSVSFMS------YGGHLEFFDVVKKYLDRLLGEVLDEALLKLINSSV-----HGVS-QAMQVA 556 (804)
Q Consensus 489 S~~vP~~c~~ir~fi~~~~~f~~------~~~~~~~d~~v~ks~d~lL~~~v~~~L~~~i~~~~-----~~l~-qi~Qi~ 556 (804)
.+ |.|-..+...++....|++ |.....+- .|....+-.+ +-+....++.+++ .+.+ +..+-+
T Consensus 390 -~l-t~sA~~~~~LLe~It~~l~~~~~~rY~~L~~~~---~Kl~f~Iqiq-L~d~Y~~~L~~~s~lgr~~tke~~~~~g~ 463 (706)
T 3fhn_A 390 -DF-PKSSQNFVKLINKIYDYLEPFYDLDFDLLVRYK---LMTCSLIFMN-LTSSYLDYILTVDSLNETRTKEQELYQTM 463 (706)
T ss_dssp -GG-GGHHHHHHHHHHHHHHHHSHHHHCCCGGGGHHH---HHHHHHHHHH-HHHHHHHHHHTCCCSCSEEEHHHHHHHHH
T ss_pred -cC-CHHHHHHHHHHHHHHHhccccchhhcccccchH---HHHHHHHHHh-hHHHHHHHHhCccccccccchHHHHHHHH
Confidence 11 3455556666666555443 11111110 1111111111 1133333333211 1121 123333
Q ss_pred HhHHHHHHHHHHHHHHHHHHcCCC------chhhhcc--ccccc-------HHHHHHH-HHHHHHHHHHhHHHHHHhhhh
Q 041288 557 ANMAVLERACDFFFRHAAQLSGIP------LRMAERS--RRQFP-------LTKARDA-AEEMLSGLLKNKVDGFMSLIE 620 (804)
Q Consensus 557 iNl~~le~ac~~~e~~~~~~~g~~------~~~~~~~--~~~~~-------f~~~r~~-Ae~~I~~lv~~KIdd~le~~~ 620 (804)
+- |+..|--+. .+...+.-. ..+..+. ..+.. ++..++. +++.|...+..-+.+-+....
T Consensus 464 ~~---L~~L~~V~~-~L~dWsddvfFLeLw~~l~~~t~s~~gSIFDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~ 539 (706)
T 3fhn_A 464 AK---LQHVNFVYR-KIKSLSSNFIFIQLTDIVNSTESKKYNSLFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYF 539 (706)
T ss_dssp HH---HHHHHHHHH-HHHHHTTSHHHHHHHHHHHHHTTCCCSCTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HH---HHHHHHHHH-HHHHhcCCchhHHHHHHHhcccCcccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 333332221 011111000 0000000 01122 4456777 888888888888888876322
Q ss_pred hc-cccccCC--------CCCcchhHHHHHHHHHHHHHHHhhh-CCHHHHHHHHHHHHHHHHHHHHhcccCCcccccCHH
Q 041288 621 NV-NWMADEP--------LQNGNEYVNEVIIYLETLVSTAQQI-LPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNIN 690 (804)
Q Consensus 621 ~y-DW~~~~~--------~~~~s~yi~dli~fL~~~f~s~~~~-LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~ 690 (804)
.. .|..... ...||.-+..++..|...++.+-.. ||......+..+.+.-|.+.|++-++- ..++|.+
T Consensus 540 k~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~--~nkFS~~ 617 (706)
T 3fhn_A 540 KISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILK--LNKFNQN 617 (706)
T ss_dssp HCCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTT--TSCBCHH
T ss_pred CcccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCHH
Confidence 22 4974321 1346889999999999999988888 699999999999999999998875554 4699999
Q ss_pred HHHhHHHHHHHHHHHhhhhCCCCCCCChhhHHHHHHHHHHHHHhh---hcCCcccccch-hhhcccCC
Q 041288 691 AIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLL---LSNHPENFLNP-VIRERSYN 754 (804)
Q Consensus 691 al~n~~~Dv~~le~fa~~~~~~~~~~~~~~L~~~F~ELrQlidLl---~s~~~e~y~~~-~~R~~kY~ 754 (804)
|+.||..|+.+|-.-.+ .|. +. .. ..|..|+..+-|| ...+.++|+.. ++.+..|.
T Consensus 618 Ga~Qf~~D~~~L~~v~~--lp~-~~-~~----~~~~~L~E~l~LL~L~~d~~~~~f~~~~y~~~~~~~ 677 (706)
T 3fhn_A 618 GLNQFLHDFKSLSSILS--LPS-HA-TN----YKCMSLHELVKILKLKYDPNNQQFLNPEYIKTGNFT 677 (706)
T ss_dssp HHHHHHHHHHHHHTTSC--CCT-TC-CC----HHHHHHHHHHHHHGGGGCGGGTTTTSHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHhc--CCC-cc-hh----hHHHHHHHHHHHcCCCCCcchhhHHHHHHHccCChH
Confidence 99999999998754444 131 11 11 2344555555555 33344556543 33344454
No 3
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=97.82 E-value=0.00078 Score=70.74 Aligned_cols=206 Identities=13% Similarity=0.163 Sum_probs=144.1
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHH-------cCCCc--h-----hhh---cc-cccccHHHHHHHHHHHHH-HHHHh
Q 041288 550 SQAMQVAANMAVLERACDFFFRHAAQL-------SGIPL--R-----MAE---RS-RRQFPLTKARDAAEEMLS-GLLKN 610 (804)
Q Consensus 550 ~qi~Qi~iNl~~le~ac~~~e~~~~~~-------~g~~~--~-----~~~---~~-~~~~~f~~~r~~Ae~~I~-~lv~~ 610 (804)
..+.+.++-+.-++.|++|+......+ ...+. . +.. .+ ..+..|++.-+.+-+.+| ..+..
T Consensus 17 ~~~~~Flv~LNnld~s~eyi~rL~~~l~~~l~~~Fp~~~d~~~~~~kv~~~l~~l~~~~~k~~~ll~~gi~~Lf~~~ikp 96 (263)
T 3hr0_A 17 EAKMSFLVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNSTAIKP 96 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHhhHhheeccHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345666666667777777776443322 11110 0 000 01 112236677777777887 57777
Q ss_pred HHHHHHhhhhhccccccCC----CCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhcccCCcccc
Q 041288 611 KVDGFMSLIENVNWMADEP----LQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKR 686 (804)
Q Consensus 611 KIdd~le~~~~yDW~~~~~----~~~~s~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~ 686 (804)
||--+++.+.+++..+++. ...-.+++..++.=++..+......|-++..+.+..-++++|+..+-..++. ++
T Consensus 97 rLr~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~---~~ 173 (263)
T 3hr0_A 97 QVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLK---ST 173 (263)
T ss_dssp HHHHHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT---CC
T ss_pred HHHHHHHHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHh---CC
Confidence 7776666554555555421 0011247888888888888887778888888888888999999999988875 78
Q ss_pred cCHHHHHhHHHHHHHHHHHhhhhCCCCCCCChhhHHHHHHHHHHHHHhhhcCCcccccc---hhhhcccCCCCChhhHHH
Q 041288 687 FNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPENFLN---PVIRERSYNALDHRKVVT 763 (804)
Q Consensus 687 in~~al~n~~~Dv~~le~fa~~~~~~~~~~~~~~L~~~F~ELrQlidLl~s~~~e~y~~---~~~R~~kY~~v~~~~~~~ 763 (804)
+|.-|--+|+.||..+-.|+.+. +...+++.|+-|.|++.+|.-++|++-.+ +....-.+ +++|.+...
T Consensus 174 fn~lGal~LdrDvr~li~~~~~~-------~~~~lRekF~RL~QI~~lLnle~~eev~d~~~~~~~~~~W-~Ls~~E~r~ 245 (263)
T 3hr0_A 174 FNRLGGLQFDKELRSLIAYLTTV-------TTWTIRDKFARLSQMATILNLERVTEILDYWGPNSGPLTW-RLTPAEVRQ 245 (263)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHTT-------SCTTHHHHTHHHHHHHHHHTCSSGGGGGGTSGGGGTTCCC-CSCHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHHHhc-------cchhhhHHHHHHHHHHHHHcCCChHHHHHHhcccCCCccc-cCCHHHHHH
Confidence 99999999999999999999764 34669999999999999999999987644 32222345 689999888
Q ss_pred HHH
Q 041288 764 ISE 766 (804)
Q Consensus 764 lLe 766 (804)
++.
T Consensus 246 il~ 248 (263)
T 3hr0_A 246 VLA 248 (263)
T ss_dssp HHT
T ss_pred HHH
Confidence 876
No 4
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.34 Score=53.63 Aligned_cols=181 Identities=9% Similarity=0.098 Sum_probs=136.5
Q ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 041288 592 PLTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHI 671 (804)
Q Consensus 592 ~f~~~r~~Ae~~I~~lv~~KIdd~le~~~~yDW~~~~~~~~~s~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~hi 671 (804)
.|.+..+.|-..+.+.|-..+...+..+---.|... +++..++.=++.-+.-+...|.+...+.++-.+.+++
T Consensus 182 ~f~~l~~~~~~~L~~~if~dl~p~~~~lft~~W~~~-------~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~ 254 (399)
T 2fji_1 182 GFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMG-------SQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGET 254 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHTTTTSGGGTTC-------CHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhcCC-------cHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 477788888888888888888877764334578532 1888888888888887768899999999999999999
Q ss_pred HHHHHhcccCCcccccC---HHHHHhHHHHHHHHHHHhhhhCCCCCCCChhhHHHHHHHHHHHHHhhhcCCcccccchhh
Q 041288 672 SETIVGAVYGDSVKRFN---INAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVI 748 (804)
Q Consensus 672 s~~ll~~Ll~~~vk~in---~~al~n~~~Dv~~le~fa~~~~~~~~~~~~~~L~~~F~ELrQlidLl~s~~~e~y~~~~~ 748 (804)
....+..|.. -.+++ ..|...+..|+..+.+|.....+..+. ...-+...|.-|.++.+ +..+.++.+.+...
T Consensus 255 v~~Yl~~l~~--~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~~~~~-~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~ 330 (399)
T 2fji_1 255 IIKFLTALSF--EHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNES-KDTLITQNFTVMEFFMD-LSCEPIDSILDIWQ 330 (399)
T ss_dssp HHHHHHGGGG--CCCCCCGGGHHHHHHHHHHHHHHHHHHHHTTTCTT-HHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHH
T ss_pred HHHHHHHHhc--CCCCCchhHHHHHHHHHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHH
Confidence 9999998875 45677 899999999999999999887321000 00127888999999999 88755477766554
Q ss_pred hc-ccCCCCChhhHHHHHHhhcCCCCCcccccCCCCCCCChhhhhHHHH
Q 041288 749 RE-RSYNALDHRKVVTISEKLRDPSDRLFGTFGSRGAKQNPKKKSLDAL 796 (804)
Q Consensus 749 R~-~kY~~v~~~~~~~lLeK~~~~~~~~f~~~~~~~~~~~~rkk~~~~v 796 (804)
-. +.|+.+.++.+..||. +|.. ++ ++++|.+++.+
T Consensus 331 ~l~~~ypD~~~~~V~aiL~-~R~D-------~~-----~~~~k~ll~~~ 366 (399)
T 2fji_1 331 KYLEVYWDSRIDLLVGILK-CRKD-------VS-----SSERKKIVQQA 366 (399)
T ss_dssp HHHTTCTTCCSHHHHHHHT-TCTT-------CC-----HHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHH-hccC-------CC-----HHHHHHHHHHH
Confidence 44 5799999999999995 2211 11 24788888887
No 5
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.25 Score=55.10 Aligned_cols=130 Identities=8% Similarity=0.117 Sum_probs=100.6
Q ss_pred chhHHHHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHHHHHhcccCCcccccCHHHHHhHHHHHHHHHHHhhhhCCC
Q 041288 634 NEYVNEVIIYLETLVSTAQQ-ILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPL 712 (804)
Q Consensus 634 s~yi~dli~fL~~~f~s~~~-~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~le~fa~~~~~~ 712 (804)
...+.+++.+|..++..+-. .+|+.+...++...|.+|+..+.+-|+... +-.+-.-=.++...|..||+|+.+.
T Consensus 201 ~~~~~~Il~~L~~~~~~L~~~~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~-~~cs~s~G~qIr~nls~Le~W~~~~--- 276 (419)
T 2f6h_X 201 EYTMDDILTFFNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKR-NFLSWKRGLQLNYNVTRLEEWCKTH--- 276 (419)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccC-cccchhhHHHHHhhHHHHHHHHHHc---
Confidence 45789999999988886633 799999999999999999999999776443 4455544578899999999999985
Q ss_pred CCCCChhhHHHHHHHHHHHHHhhhcCCcccccchhhhcccCCCCChhhHHHHHHhhcCCC
Q 041288 713 FTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKLRDPS 772 (804)
Q Consensus 713 ~~~~~~~~L~~~F~ELrQlidLl~s~~~e~y~~~~~R~~kY~~v~~~~~~~lLeK~~~~~ 772 (804)
+.+....+|..++|.+.||....-.. -|-.....-.+.++|..+..||..|+...
T Consensus 277 ----~l~~a~~~L~~l~Qa~~lLq~~k~~~-~d~~~i~~~C~~Ln~~Ql~~il~~Y~~d~ 331 (419)
T 2f6h_X 277 ----GLTDGTECLQHLIQTAKLLQVRKYTI-EDIDILRGICYSLTPAQLQKLISQYQVAD 331 (419)
T ss_dssp ----TCTTHHHHTHHHHHHHHHTTSCCSSH-HHHHHHHHHTTTSCHHHHHHHHHHCCCCT
T ss_pred ----CChhHHHHHHHHHHHHHHHhhCCCch-hhHHHHHHHhhcCCHHHHHHHHHhCCCcc
Confidence 22346778999999999998654321 22222324478899999999999998743
No 6
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=95.68 E-value=1.5 Score=47.50 Aligned_cols=105 Identities=12% Similarity=0.202 Sum_probs=75.8
Q ss_pred CcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhccc-------------CCcccccCHHHHHhHHHH
Q 041288 632 NGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVY-------------GDSVKRFNINAIMGIDVD 698 (804)
Q Consensus 632 ~~s~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his~~ll~~Ll-------------~~~vk~in~~al~n~~~D 698 (804)
.++..|.-|..||+..+..+-.+|-..+...+...-++++-+.+..+++ +..-+..++.-...+..+
T Consensus 209 ~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i~lP~~~~~~~~~~~~~~~r~~~~~~~~~l~~~ 288 (341)
T 3swh_A 209 DADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVREEAKSLTPKQCAVVELA 288 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSSCC----------CTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhhHhhhcccccCCCCHHHHHHHHHH
Confidence 4578999999999999998888999999999999999999999999662 233466888889999999
Q ss_pred HHHHHHHhhhhCCCCCCCChhhHH--HHHHHHHHHHHhhhcCC
Q 041288 699 IRLLESFADNLAPLFTDGDANQLK--TALAESRQLVNLLLSNH 739 (804)
Q Consensus 699 v~~le~fa~~~~~~~~~~~~~~L~--~~F~ELrQlidLl~s~~ 739 (804)
++.|.+|--+. -.|+ +...|. ..+..|++.+.|...+.
T Consensus 289 L~~L~~fFhA~--G~GL-~~~~Leks~~~~~l~~~L~L~~~~T 328 (341)
T 3swh_A 289 LDTIKQYFHAG--GVGL-KKTFLEKSPDLQSLRYALSLYTQAT 328 (341)
T ss_dssp HHHHHHHHHGG--GTSC-CHHHHHTCHHHHHHHHHHHHC----
T ss_pred HHHHHHHhccC--CCCC-CHHHHccChhHHHHHHHHHHhcCCH
Confidence 99999988764 1122 233332 24777999999876654
No 7
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.8 Score=50.18 Aligned_cols=133 Identities=15% Similarity=0.197 Sum_probs=100.9
Q ss_pred CCcchhHHHHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHHHHHhcccCCcccccCHHHHHhHHHHHHHHHHHhhhh
Q 041288 631 QNGNEYVNEVIIYLETLVSTAQQ-ILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNL 709 (804)
Q Consensus 631 ~~~s~yi~dli~fL~~~f~s~~~-~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~le~fa~~~ 709 (804)
..++..+.+++.+|..++..+-. .+|+.+...++...|.+|+..+.+-|+.. .+..+-.-=.++...|..||+|+++
T Consensus 182 ~~~~~s~~~Il~~L~~~~~~L~~~~V~p~li~QlfsQLF~fIna~lFN~LLlR-r~~cs~s~G~qIr~NLs~LEeW~~~- 259 (386)
T 3mmi_A 182 NSGDEKFAKLFTFLNEFDAVLCKFQVVDSMHTKIFNDTLKYLNVMLFNDLITK-CPALNWKYGYEVDRNIERLVSWFEP- 259 (386)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCBCHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHcc-CcccCcchHHHHHhhHHHHHHHHHh-
Confidence 34567899999999998886644 79999999999999999999999977743 3455666667889999999999987
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhhhcCCcccccchhhhcccCCCCChhhHHHHHHhhcCCCC
Q 041288 710 APLFTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKLRDPSD 773 (804)
Q Consensus 710 ~~~~~~~~~~~L~~~F~ELrQlidLl~s~~~e~y~~~~~R~~kY~~v~~~~~~~lLeK~~~~~~ 773 (804)
|.+. -...|..++|.+.||....- ..-|-..-..-.+.++|.....||..|++...
T Consensus 260 ----~l~~---a~~~L~~L~QA~~LLQ~~K~-t~~Di~~i~~~C~~Lsp~QL~kIL~~Y~p~~~ 315 (386)
T 3mmi_A 260 ----RIED---VRPNLIQIIQAVKILQLKIS-NLNEFKLLFDFWYALNPAQIQAILLKYKPANK 315 (386)
T ss_dssp ----TSSC---CGGGGHHHHHHHHHHHCCCC-CHHHHHHHHTTCCSSCHHHHHHHHHTBCCC--
T ss_pred ----ccHH---HHHHHHHHHHHHHHHccCCC-CHHHHHHHHHhcccCCHHHHHHHHHhCcCCCC
Confidence 2212 12478899999999977632 22222222234788999999999999987653
No 8
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=92.23 E-value=2.2 Score=40.27 Aligned_cols=108 Identities=7% Similarity=0.118 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHH
Q 041288 593 LTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHIS 672 (804)
Q Consensus 593 f~~~r~~Ae~~I~~lv~~KIdd~le~~~~yDW~~~~~~~~~s~yi~dli~fL~~~f~s~~~~LP~~v~~~~~~~a~~his 672 (804)
|.+-++.-+.++.+.+..-+.--+. +|... ++.||+|+..++.-+.++-..+.-.||++-...++...+.-.-
T Consensus 17 y~eH~~eI~~KLv~Im~~r~~~~l~-----~Wd~k--~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~Im~~Vf~~fk 89 (141)
T 3n1e_A 17 YHDHIAEISAKLVAIMDSLFDKLLS-----KYEVK--APVPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYK 89 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCC--SSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HhccC--CCCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 4455566666666666666654332 79764 3479999999999999999988889999999999999999999
Q ss_pred HHHHhcccCCcccccCHHHHHh--HHHHHHHHHHHhhhh
Q 041288 673 ETIVGAVYGDSVKRFNINAIMG--IDVDIRLLESFADNL 709 (804)
Q Consensus 673 ~~ll~~Ll~~~vk~in~~al~n--~~~Dv~~le~fa~~~ 709 (804)
+.+-..+. .+.--|.+|-.. +-.||.|..+-...+
T Consensus 90 ~~l~~~~~--~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L 126 (141)
T 3n1e_A 90 LHLKKQLS--HLNVINDGGPQNGLVTADVAFYTGNLQAL 126 (141)
T ss_dssp HHHHHHHH--HTTCCSSSSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHH--HcCCCCCCcccchHHHHHHHHHHHHhccc
Confidence 99888883 444456667765 789999998888876
No 9
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=52.60 E-value=3.1e+02 Score=31.30 Aligned_cols=250 Identities=10% Similarity=0.082 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------hhhHHHhhHHHHHhhh----cCCCCchHHHHHHHhhchhHHH
Q 041288 131 SKNIDLALKSIVSCVKLMELCSRANHHLSNN-------NFYMALKCTDALESEF----SDKAPSSTLKRMLEKKTPSIRS 199 (804)
Q Consensus 131 ~~NI~eai~~L~~cl~VLel~~k~~e~i~~k-------kyy~ALktLd~Le~~~----L~~v~~~~f~~~i~~sIP~lr~ 199 (804)
++||+.++.++...++-.+..++.+.-|++| .|-.||+-|++.-... +.......|.. +...+-.+-+
T Consensus 2 ~~NId~~l~~i~~v~~~~~~~~~~e~iI~~Gp~~~~l~~Yl~al~rl~~al~~~~~~n~~s~e~~~f~g-~l~~~~~L~~ 80 (564)
T 2b1e_A 2 HMNIESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHG-ILTHLEQLIK 80 (564)
T ss_dssp ------CCGGGCCHHHHHHHHHHHHHHHHTCHHHHCHHHHHHHHHHHHHHHHHHHC----CCCSHHHHH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHH-HHHHHHHHHH
Confidence 5799999999999999999999999888876 3778877776643311 11123334555 2222222322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCCCCCC
Q 041288 200 YIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASSARQREEDLRIKQRQAEEQSRLSLRDCVYALQEEDDDENGLSNGVES 279 (804)
Q Consensus 200 ~Ik~~~~~~l~~WL~~IR~~s~~IG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~l~~~~~~ 279 (804)
.=+.....+|...|.. +..+--... +. .+ .++
T Consensus 81 ~g~~~L~~~F~~lL~~----s~p~~p~~~------------------------------------i~--k~------~p~ 112 (564)
T 2b1e_A 81 RSEAQLRVYFISILNS----IKPFDPQIN------------------------------------IT--KK------MPF 112 (564)
T ss_dssp HHHHHHHHHHHHHHTT----SCCCCHHHH------------------------------------HH--HT------CCC
T ss_pred HHHHHHHHHHHHHHHh----CCCCCHHHh------------------------------------hc--cC------CCC
Confidence 2222222233332221 100000000 00 00 000
Q ss_pred CCCCCCCccccCchhHHHHHHHHHhcCchHHHHHHHHHhhHhhhhcccc---CCC-----C--cch---HHHHHHHHHHh
Q 041288 280 DSNGGAGLLGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQ---VSS-----M--TPF---LESHQTFFAQI 346 (804)
Q Consensus 280 ~~~~~~~~~~iDf~Ply~cihI~~~Lg~~e~F~~yY~~~Rr~Q~~l~l~---~~~-----~--~~~---~~~l~~yl~~I 346 (804)
+.+ .....=++.++.+|+ ...|...++.+-|.+.|......-|. +.. . .+. .+.+..|...+
T Consensus 113 p~l--~~~~l~~L~~Ia~~m---~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~ 187 (564)
T 2b1e_A 113 PYY--EDQQLGALSWILDYF---HGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEAL 187 (564)
T ss_dssp CCC--CHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHH
T ss_pred CCC--CHHHHHHHHHHHHHH---HhcCCchHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHH
Confidence 011 012223688888883 34488889999999999886533332 100 0 111 15689999999
Q ss_pred hhHHHhhHHHHhhcCCCcchhhHHHHHHHHHHHHH----HHHHHh---hccC--CChHHHHHHHHHHHHHHHHhhhCCCC
Q 041288 347 AGFFIVEDRILRTGGGLISKIEVENLWDAAVSKMC----SVLEDQ---FSRM--QTANHLLLIKDYVSLLGVTLRRYGYP 417 (804)
Q Consensus 347 ~GFFivE~~vl~tt~~l~s~~~vdelWe~~~~kl~----~~l~~~---l~~~--~~~~~ll~iK~~i~lf~~tl~~ygy~ 417 (804)
.|+|..|..+.....+- +...-+.....++.... ..++.. .+.+ ++.=.++.+=+.+.-+...+++....
T Consensus 188 ~~l~~~E~~L~~~vf~~-~~~~~~~~f~~i~~~~l~~~~~~l~~~~~~~k~~~~~~~f~~l~~~~~l~~~~~~~~~~~~~ 266 (564)
T 2b1e_A 188 LGFIANEKSLVDDLYSQ-YTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESINDVKKSLRGKELQ 266 (564)
T ss_dssp HHHHHHHHHHHHHHSCT-TCTTHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCTHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcchhHHHHHHHHHHHHHHHcccccc
Confidence 99999999997544432 11222333333333222 122211 1111 11112445555555555666654444
Q ss_pred c-hHHHHHHHHHHHHHHHH
Q 041288 418 I-DALLDVLSKHRDKYHEL 435 (804)
Q Consensus 418 v-~~L~~~L~~l~d~Y~~l 435 (804)
. .++.+++..+.+.=..+
T Consensus 267 ~~~~~~~~l~~L~~~~~~~ 285 (564)
T 2b1e_A 267 NYNLLQDCTQEVRQVTQSL 285 (564)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3 56666666666554433
No 10
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=32.58 E-value=2.9e+02 Score=26.84 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhhHHHHHhhhcCCC-CchHHHHHHHhhchhHHHHHHH
Q 041288 128 QTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDKA-PSSTLKRMLEKKTPSIRSYIER 203 (804)
Q Consensus 128 r~v~~NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALktLd~Le~~~L~~v-~~~~f~~~i~~sIP~lr~~Ik~ 203 (804)
..|+....+|+.++-.|..+=.++..+...++.++..--..++.-|.... ... +...+...+..-+|.+...+.|
T Consensus 112 ~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l-~~~~~~~~~~~~l~~l~p~l~~~l~D 187 (242)
T 2qk2_A 112 PNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARAL-TRTQPTALNKKLLKLLTTSLVKTLNE 187 (242)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH-TTCCGGGCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HHcCCCCccHHHHHHHHHHHHHHhcC
Confidence 46778888888888777777777888888888776654445555544322 222 1222344556666666665543
No 11
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=30.42 E-value=1.2e+02 Score=25.16 Aligned_cols=69 Identities=10% Similarity=0.197 Sum_probs=44.2
Q ss_pred HHHHHHHHhhHHHHHHHh---hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 041288 58 QHLRQFSRSKESEIEEVC---KAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNI 134 (804)
Q Consensus 58 ~~L~~~i~~ke~eIE~iC---~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI 134 (804)
.+.+..|..+-.-+..+- +.|++.+-+|+.++..-.. +++..+|..+-. +-.+.-..|.+.+.|
T Consensus 3 ~kiQdVVN~q~~aL~~L~~qL~~NFgAISSsi~dIy~rLd------GRlaaLnafv~~-------~~~ev~~~r~lA~~i 69 (77)
T 1zva_A 3 GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDISGGRG------GDISGINASVVN-------IQKEIDRLNEVAKNL 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC------CCCTTHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc------chHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 345555555555555443 4678888888888877654 667766665544 455566777777777
Q ss_pred HHHHH
Q 041288 135 DLALK 139 (804)
Q Consensus 135 ~eai~ 139 (804)
+|...
T Consensus 70 NEcV~ 74 (77)
T 1zva_A 70 NESLI 74 (77)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76654
No 12
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.00 E-value=2.7e+02 Score=22.65 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=32.7
Q ss_pred HHHHHHhhHHHHHHHhhhhhhHHHHHHH----HHHhhhhhHHHHHHHHHHHhHHHHH
Q 041288 60 LRQFSRSKESEIEEVCKAHYQDFILAVD----DLRSLLSDVDSLKSALSDSNSKLQS 112 (804)
Q Consensus 60 L~~~i~~ke~eIE~iC~~~yq~Fi~sv~----~L~~Vr~~~~~L~~~l~~~n~~lq~ 112 (804)
-+..+...-.|.|......+++.-..+. ++...+....+|+..|..+...|+.
T Consensus 18 YE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 18 YESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666677777777777777655443 3555556666666666666555553
No 13
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.40 E-value=3.2e+02 Score=23.04 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=37.3
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHH
Q 041288 67 KESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPL 117 (804)
Q Consensus 67 ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L 117 (804)
+-..+|++-..+-+.-++-..+|..++.+...|++++...+-.|+.....-
T Consensus 7 rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 7 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334566666666777788888888888888888888888877777665544
Done!