Query 041288
Match_columns 804
No_of_seqs 138 out of 219
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 09:13:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041288.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041288hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efla1 a.238.1.4 (A:1-288) Fo 26.5 2.2E+02 0.016 25.8 17.2 21 56-76 76-96 (288)
2 d1fx0a1 a.69.1.1 (A:373-501) F 18.2 73 0.0053 26.9 5.4 54 440-511 41-94 (129)
3 d1f44a1 a.60.9.1 (A:20-129) Cr 14.0 2.1E+02 0.015 22.7 7.2 57 671-729 4-60 (110)
4 d1dova_ a.24.9.1 (A:) alpha-ca 12.7 4.2E+02 0.031 23.2 10.6 110 36-154 36-146 (181)
5 d1ez3a_ a.47.2.1 (A:) Syntaxin 10.9 3.7E+02 0.027 21.5 11.1 59 60-126 15-73 (124)
6 d1wera_ a.116.1.2 (A:) p120GAP 10.2 4.8E+02 0.035 24.6 9.8 66 596-661 85-155 (324)
7 d1elwa_ a.118.8.1 (A:) Hop {Hu 10.1 3.6E+02 0.026 20.8 9.1 46 132-177 17-67 (117)
8 d1u5la_ d.6.1.1 (A:) Prion pro 10.0 86 0.0062 25.6 3.0 20 66-85 87-106 (107)
9 d2qklb1 a.242.1.1 (B:2-91) mRN 10.0 86 0.0062 25.0 3.0 28 176-203 53-80 (90)
10 d1dkza1 a.8.4.1 (A:507-603) Dn 9.6 3.2E+02 0.023 21.1 6.8 38 190-227 59-96 (97)
No 1
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.51 E-value=2.2e+02 Score=25.75 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhHHHHHHHhh
Q 041288 56 LLQHLRQFSRSKESEIEEVCK 76 (804)
Q Consensus 56 ll~~L~~~i~~ke~eIE~iC~ 76 (804)
++...+..+..+..--+.|..
T Consensus 76 ~~~~~~~~a~~h~~~a~~l~~ 96 (288)
T d2efla1 76 NLNEMNDYAGQHEVISENMAS 96 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444445544444444443
No 2
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=18.24 E-value=73 Score=26.91 Aligned_cols=54 Identities=7% Similarity=0.189 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhCCCcccccCCHHHHhchhccccCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHhh
Q 041288 440 CRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMS 511 (804)
Q Consensus 440 ~~~~f~~il~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~~~f~~ 511 (804)
-.+..++++..+.|.||.|.. .++..|-.. .+.....|+ ..|+.|-..++.|+.
T Consensus 41 rG~rl~ElLKQ~q~~Pl~v~e-----Qv~iLyA~~-~G~LD~ipv------------~~I~~fe~~ll~~l~ 94 (129)
T d1fx0a1 41 RGQRLRELLKQPQSAPLTVEE-----QVMTIYTGT-NGYLDSLEL------------DQVRKYLVELRTYVK 94 (129)
T ss_dssp HHHHHHHHHCCCTTCCCCHHH-----HHHHHHHHH-TTSSSSSCH------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccCCCHHH-----HHHHHHHHH-cCccccCCH------------HHHHHHHHHHHHHHH
Confidence 367789999999999999943 233333332 223334555 378999999888886
No 3
>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
Probab=14.05 E-value=2.1e+02 Score=22.72 Aligned_cols=57 Identities=5% Similarity=0.048 Sum_probs=38.6
Q ss_pred HHHHHHhcccCCcccccCHHHHHhHHHHHHHHHHHhhhhCCCCCCCChhhHHHHHHHHH
Q 041288 671 ISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESR 729 (804)
Q Consensus 671 is~~ll~~Ll~~~vk~in~~al~n~~~Dv~~le~fa~~~~~~~~~~~~~~L~~~F~ELr 729 (804)
+.+.|++.| ..-+.++.+-+.....|+.....|+...-..+-..+...+...+.+|.
T Consensus 4 ~~~~~~~~l--~~~~~~S~nT~~aY~~dl~~f~~w~~~~~~~~l~~~~~~v~~yl~~l~ 60 (110)
T d1f44a1 4 VRKNLMDMF--RDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQ 60 (110)
T ss_dssp THHHHHSCC--SCGGGSCHHHHHHHHHHHHHHHHHHHHTTCCTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHhccCHHHHHHHHHHHHHHHHHHhhhcccccchhhhHHHHHHHHHH
Confidence 456788888 456789999999999999999999887522111112344555444443
No 4
>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.72 E-value=4.2e+02 Score=23.17 Aligned_cols=110 Identities=12% Similarity=0.079 Sum_probs=75.4
Q ss_pred CCCchhHHHHHHHhcCChhHHHHHHHHHH-HhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhH
Q 041288 36 NGEDLGPFVRKAFASGKPETLLQHLRQFS-RSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVA 114 (804)
Q Consensus 36 ~~d~l~piik~~~~~~~~~~ll~~L~~~i-~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~ 114 (804)
+....+.+|+++- .++....... -.=..+|-+|.. +-....+.+..+..|. +..+|...+..+...+-+-+
T Consensus 36 s~~~R~~lv~aaR------~lLs~vt~lLllaD~~~Vr~il~-~~~~v~~~l~~le~v~-s~~el~~~~~~f~~~~~~L~ 107 (181)
T d1dova_ 36 SSVKRGNMVRAAR------ALLSAVTRLLILADMADVYKLLV-QLKVVEDGILKLRNAG-NEQDLGIQYKALKPEVDKLN 107 (181)
T ss_dssp CHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHHHHHHH
T ss_pred ChHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHH
Confidence 3344566666655 3444433322 233456666653 3456777777777776 57778888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041288 115 GPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRA 154 (804)
Q Consensus 115 ~~L~~kk~~L~~~r~v~~NI~eai~~L~~cl~VLel~~k~ 154 (804)
.-...+-++|.+.+ -+..+..|...|+.|.|+|--..|.
T Consensus 108 ~~~~~Rq~dL~d~~-~R~~l~~ar~~Lk~~~p~L~ts~k~ 146 (181)
T d1dova_ 108 IMAAKRQQELKDVG-NRDQMAAARGILQKNVPILYTASQA 146 (181)
T ss_dssp HHHHHHHHHCSSHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHH-HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 77777777776654 5788999999999999999888876
No 5
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.87 E-value=3.7e+02 Score=21.47 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=35.3
Q ss_pred HHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 041288 60 LRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVE 126 (804)
Q Consensus 60 L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~L~~~l~~~n~~lq~s~~~L~~kk~~L~~ 126 (804)
+..-+..-+..+++|..-| ..++.++... .+++.++.++..+++..++.+..+.+.|-.
T Consensus 15 Ir~~I~~i~~~v~~i~~~~-~~~l~~~~~~-------~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~ 73 (124)
T d1ez3a_ 15 IRGFIDKIAENVEEVKRKH-SAILASPNPD-------EKTKEELEELMSDIKKTANKVRSKLKSIEQ 73 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHCSSCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHcCCCcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777777666 3444433222 345666666666777777777666666643
No 6
>d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.22 E-value=4.8e+02 Score=24.56 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhccccccCCCC--CcchhHHHHHHHHHHHHHHH---hhhCCHHHHH
Q 041288 596 ARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQ--NGNEYVNEVIIYLETLVSTA---QQILPAQVLR 661 (804)
Q Consensus 596 ~r~~Ae~~I~~lv~~KIdd~le~~~~yDW~~~~~~~--~~s~yi~dli~fL~~~f~s~---~~~LP~~v~~ 661 (804)
.|..+..-+-+.+..-|+++++.-.++++.|..... +...-+..+..+++.+++++ ...+|+.++.
T Consensus 85 ~r~~g~~yL~~~L~~~i~~i~~~~~~~Evdp~~i~~~~~~~~n~~~L~~~~~~~~~~I~~s~~~~P~~lr~ 155 (324)
T d1wera_ 85 MKATATQFVHHALKDSILKIMESKQSCELSPSKLEKNEDVNTNLTHLLNILSELVEKIFMASEILPPTLRY 155 (324)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHCCCCCCCCGGGTCSSCCHHHHHHHHHHHHHHHHHHHHTTGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccCcCcccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHH
Confidence 345567777777777788877644445555554332 33445566666555544433 2678998875
No 7
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.09 E-value=3.6e+02 Score=20.75 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhchhhHHHhhHHHHHhhh
Q 041288 132 KNIDLALKSIVSCVK-----LMELCSRANHHLSNNNFYMALKCTDALESEF 177 (804)
Q Consensus 132 ~NI~eai~~L~~cl~-----VLel~~k~~e~i~~kkyy~ALktLd~Le~~~ 177 (804)
.+.++|++..+.|+. .--..++..-+.+.|+|-.|++.++.--...
T Consensus 17 g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 67 (117)
T d1elwa_ 17 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 67 (117)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc
Confidence 466677777777776 3445666677777888888888887775544
No 8
>d1u5la_ d.6.1.1 (A:) Prion protein domain {Red-eared slider turtle (Trachemys scripta) [TaxId: 34903]}
Probab=9.98 E-value=86 Score=25.63 Aligned_cols=20 Identities=35% Similarity=0.669 Sum_probs=16.3
Q ss_pred hhHHHHHHHhhhhhhHHHHH
Q 041288 66 SKESEIEEVCKAHYQDFILA 85 (804)
Q Consensus 66 ~ke~eIE~iC~~~yq~Fi~s 85 (804)
=.++=||+||...|++|-.+
T Consensus 87 Im~rvI~EMC~tqY~~~~la 106 (107)
T d1u5la_ 87 VMKQVIQEMCMQQYQQYQLA 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34567999999999999754
No 9
>d2qklb1 a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-terminal domain {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=9.96 E-value=86 Score=25.02 Aligned_cols=28 Identities=7% Similarity=0.009 Sum_probs=24.4
Q ss_pred hhcCCCCchHHHHHHHhhchhHHHHHHH
Q 041288 176 EFSDKAPSSTLKRMLEKKTPSIRSYIER 203 (804)
Q Consensus 176 ~~L~~v~~~~f~~~i~~sIP~lr~~Ik~ 203 (804)
..||.++...|++.|-+..|.++..+..
T Consensus 53 p~Lp~~~~~~Fa~~if~~cp~L~~~~~~ 80 (90)
T d2qklb1 53 DQLPSLGLRVFSAKLFAHCPLLWKWSKV 80 (90)
T ss_dssp TTSCCCCHHHHHHHHHHHCTHHHHHHTC
T ss_pred CCCCCCcHHHHHHHHHHHCHHHHhhhhh
Confidence 4678888889999999999999988764
No 10
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=9.64 E-value=3.2e+02 Score=21.09 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=22.4
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 041288 190 LEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLA 227 (804)
Q Consensus 190 i~~sIP~lr~~Ik~~~~~~l~~WL~~IR~~s~~IG~~a 227 (804)
|...|-.++..+...-...++.....+.+.+..||+.|
T Consensus 59 i~~~i~~l~~~l~~~d~~~i~~~~~~L~~~~~~l~e~a 96 (97)
T d1dkza1 59 IESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIA 96 (97)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555554445556666666667777776654
Done!