BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>041295
MNGNVDISSAYNGDEIGIHIENHRGSGRSRDFMDVDLLEEEPCIKCNRRDESLLVCIQSG
CPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKKAMETKKQLACFIDPKSFT
GDKKENCRTDKGKELNTSSLHQERNYGYGGCEGQMDDVQVENLIVEVEGKLENAGDNAKT
ADSCDRFKRALENQSELQDKSYSRENTWD

High Scoring Gene Products

Symbol, full name Information P value
AT1G01150 protein from Arabidopsis thaliana 1.9e-11
TRFL10
AT5G03780
protein from Arabidopsis thaliana 5.5e-09
AT1G14770 protein from Arabidopsis thaliana 5.5e-08
AT1G68030 protein from Arabidopsis thaliana 0.00082

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041295
        (209 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2035372 - symbol:AT1G01150 species:3702 "Arabi...   162  1.9e-11   1
TAIR|locus:2144568 - symbol:TRFL10 "TRF-like 10" species:...   149  5.5e-09   1
TAIR|locus:2006792 - symbol:AT1G14770 species:3702 "Arabi...   143  5.5e-08   1
TAIR|locus:2200201 - symbol:AT1G68030 species:3702 "Arabi...   108  0.00082   1


>TAIR|locus:2035372 [details] [associations]
            symbol:AT1G01150 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] InterPro:IPR001005
            InterPro:IPR009057 SMART:SM00717 EMBL:CP002684 GO:GO:0003677
            GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:3.30.40.10
            InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
            InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR017877
            PROSITE:PS50090 IPI:IPI00545609 RefSeq:NP_171623.1 UniGene:At.51444
            ProteinModelPortal:F4HQJ2 SMR:F4HQJ2 EnsemblPlants:AT1G01150.1
            GeneID:839294 KEGG:ath:AT1G01150 OMA:HENLHQL Uniprot:F4HQJ2
        Length = 345

 Score = 162 (62.1 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 39/145 (26%), Positives = 70/145 (48%)

Query:     3 GNVDISSAYNGDEI-GIHIENHRGSGRSRDFMDVDLLEEEPCIKCNRRDESLLVCIQSGC 61
             G+ D++SA N      + ++     G S  F   + L E  CI C+  D+ ++ C  + C
Sbjct:    46 GDEDVNSAPNIFTYDNVPLKKRHYLGTSDTFRSFEPLNEHACIVCDIADDGVVPCSGNEC 105

Query:    62 PISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKKAMETKKQLACFIDPKSFTG 121
             P++VH  C+   +  +D    YCPY W+K +  R+  LR + +   K L  +   +  +G
Sbjct:   106 PLAVHRKCVE--LDCEDPATFYCPYCWFKEQATRSTALRTRGVAAAKTLVQYGCSELRSG 163

Query:   122 D---KKENCRTDKGKELNTS-SLHQ 142
             D    +EN + + G + +    LH+
Sbjct:   164 DIVMTRENSQLENGSDNSLPMQLHE 188


>TAIR|locus:2144568 [details] [associations]
            symbol:TRFL10 "TRF-like 10" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0009751
            "response to salicylic acid stimulus" evidence=IEP] [GO:0006302
            "double-strand break repair" evidence=RCA] [GO:0010332 "response to
            gamma radiation" evidence=RCA] InterPro:IPR001005
            InterPro:IPR009057 SMART:SM00717 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003682 GO:GO:0009751
            Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017877
            PROSITE:PS50090 InterPro:IPR025999 Pfam:PF13325 EMBL:AB493735
            IPI:IPI00535579 RefSeq:NP_195998.2 UniGene:At.33228
            ProteinModelPortal:C0SVN2 SMR:C0SVN2 PRIDE:C0SVN2
            EnsemblPlants:AT5G03780.1 GeneID:831726 KEGG:ath:AT5G03780
            TAIR:At5g03780 eggNOG:NOG257926 HOGENOM:HOG000200791 OMA:DDEANEN
            PhylomeDB:C0SVN2 ProtClustDB:CLSN2714704 Genevestigator:C0SVN2
            Uniprot:C0SVN2
        Length = 420

 Score = 149 (57.5 bits), Expect = 5.5e-09, P = 5.5e-09
 Identities = 49/183 (26%), Positives = 82/183 (44%)

Query:    37 LLEEEPCIKCNRRDESLLVCIQSGCPISVHENCL---------SCGVKSDDVGNIYCPYF 87
             LL+ + CI C   DE +  C    C +S H  CL         S    S+DV N +CPY 
Sbjct:    67 LLDLDACIVCEVSDERVSRCCGVDCLLSFHGECLYADLGSTSSSSSSSSEDVSNPFCPYC 126

Query:    88 WYKCELMRTKELRKKAMETKKQLACFIDPKSFTGDKKENCRTDK--GKELNTSSLHQERN 145
             W K   +++K LR+K +E +K +  ++D +  + D+      D+   +E +T  +     
Sbjct:   127 WLKIVALKSKTLREKTVEAEKAVCKYLDKEMKSRDEDITLSGDEIGNQEQSTDIVSDHEL 186

Query:   146 YGY-GGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALENQSELQDKSYSR 204
              G   GC  + D  Q +   V     ++  G + K A   ++F+ A E+    +D+    
Sbjct:   187 QGEKDGCSSKPDADQGK---VGTGKVIDEVGASEKVAT--EKFQDA-EDDETAKDQGTRI 240

Query:   205 ENT 207
              NT
Sbjct:   241 LNT 243


>TAIR|locus:2006792 [details] [associations]
            symbol:AT1G14770 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002684 Gene3D:3.30.40.10
            InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
            InterPro:IPR019786 PROSITE:PS01359 EMBL:AC006917 EMBL:BT008587
            EMBL:AK118871 IPI:IPI00543450 RefSeq:NP_172930.1 RefSeq:NP_973829.1
            UniGene:At.41953 ProteinModelPortal:Q9LQV4 SMR:Q9LQV4
            EnsemblPlants:AT1G14770.1 EnsemblPlants:AT1G14770.2 GeneID:838042
            KEGG:ath:AT1G14770 TAIR:At1g14770 InParanoid:Q9LQV4 OMA:DEYSSRP
            PhylomeDB:Q9LQV4 ProtClustDB:CLSN2682046 ArrayExpress:Q9LQV4
            Genevestigator:Q9LQV4 Uniprot:Q9LQV4
        Length = 429

 Score = 143 (55.4 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 29/75 (38%), Positives = 40/75 (53%)

Query:    40 EEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKEL 99
             E  C KC + + +LL+C +S C   VH+ CL+C V  D+ GN  CP  WY    M   E 
Sbjct:   345 ENVCWKCEK-EGTLLICSRSECAAKVHKECLNCPVNVDEYGNFLCPLCWYDRLAMEYHES 403

Query:   100 RKKAMETKKQLA-CF 113
             +K     K++L  CF
Sbjct:   404 QKLISCAKRRLVKCF 418


>TAIR|locus:2200201 [details] [associations]
            symbol:AT1G68030 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
            evidence=IEA] InterPro:IPR001965 SMART:SM00249 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0008270 EMBL:AC012563
            Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
            SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 IPI:IPI00530051
            PIR:D96703 RefSeq:NP_176970.1 UniGene:At.52429
            ProteinModelPortal:Q9C9W7 SMR:Q9C9W7 EnsemblPlants:AT1G68030.1
            GeneID:843131 KEGG:ath:AT1G68030 TAIR:At1g68030 eggNOG:NOG312375
            HOGENOM:HOG000152231 InParanoid:Q9C9W7 OMA:SSESCEY PhylomeDB:Q9C9W7
            ProtClustDB:CLSN2914489 Genevestigator:Q9C9W7 Uniprot:Q9C9W7
        Length = 314

 Score = 108 (43.1 bits), Expect = 0.00082, P = 0.00082
 Identities = 22/82 (26%), Positives = 34/82 (41%)

Query:    43 CIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKK 102
             C+ C +    LL C   GC + VH+ CL       D G+ YC      C      + + +
Sbjct:   229 CVNC-KESGKLLFCSSDGCEVMVHQKCLDSPPSYHDAGDFYCSLCALTCPSAEYVQFQDE 287

Query:   103 AMETKKQLACFIDPKSFTGDKK 124
               + K++L  F+   S    KK
Sbjct:   288 VAKAKRKLVSFLRLMSEVNKKK 309


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.133   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      209       209   0.00079  112 3  11 23  0.41    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  196 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.67u 0.10s 19.77t   Elapsed:  00:00:01
  Total cpu time:  19.67u 0.10s 19.77t   Elapsed:  00:00:01
  Start:  Fri May 10 06:41:34 2013   End:  Fri May 10 06:41:35 2013

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