BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041295
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6QR11|NELL2_BOVIN Protein kinase C-binding protein NELL2 OS=Bos taurus GN=NELL2 PE=2
SV=1
Length = 816
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 135 LNTSSLHQERNYGYGGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALENQ 194
L TS +RN +G +G M DVQ L+V +G + D +T +C+ F ++
Sbjct: 185 LGTSFWLGQRNNAHGYFKGIMQDVQ---LLVMPQGFIAQCPDLNRTCPTCNDFHGLVQKI 241
Query: 195 SELQD 199
ELQD
Sbjct: 242 MELQD 246
>sp|Q99435|NELL2_HUMAN Protein kinase C-binding protein NELL2 OS=Homo sapiens GN=NELL2
PE=1 SV=1
Length = 816
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 135 LNTSSLHQERNYGYGGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALENQ 194
L T+ +RN +G +G M DVQ L+V +G + D +T +C+ F ++
Sbjct: 185 LGTTFWLGQRNNAHGYFKGIMQDVQ---LLVMPQGFIAQCPDLNRTCPTCNDFHGLVQKI 241
Query: 195 SELQD 199
ELQD
Sbjct: 242 MELQD 246
>sp|Q5R3Z7|NELL2_PONAB Protein kinase C-binding protein NELL2 OS=Pongo abelii GN=NELL2
PE=2 SV=2
Length = 816
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 135 LNTSSLHQERNYGYGGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALENQ 194
L T+ +RN +G +G M DVQ L+V +G + D +T +C+ F ++
Sbjct: 185 LGTTFWLGQRNNAHGYFKGIMQDVQ---LLVMPQGFIAQCPDLNRTCPTCNDFHGLVQKI 241
Query: 195 SELQD 199
ELQD
Sbjct: 242 MELQD 246
>sp|Q62918|NELL2_RAT Protein kinase C-binding protein NELL2 OS=Rattus norvegicus
GN=Nell2 PE=2 SV=1
Length = 816
Score = 33.9 bits (76), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 135 LNTSSLHQERNYGYGGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALENQ 194
L T+ +RN +G +G M DVQ L+V +G + D +T +C+ F ++
Sbjct: 185 LGTTFWLGQRNNAHGYFKGIMQDVQ---LLVMPQGFIAQCPDLNRTCPTCNDFHGLVQKI 241
Query: 195 SELQD 199
ELQD
Sbjct: 242 MELQD 246
>sp|Q9HR31|TOP6B_HALSA Type 2 DNA topoisomerase 6 subunit B OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=top6B PE=3
SV=1
Length = 804
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 154 QMDDVQVENLIVEVEGKLENAGDNAK-TADSCDRFK-RALENQSELQDKSY---SRENTW 208
Q DD V L + K E+ GD + T D+ D + RA EN +E D + +REN
Sbjct: 404 QKDDATVRGLAERIAAKFESGGDTDRVTRDTLDEYVFRAAENTAEYADATIGETARENVA 463
Query: 209 D 209
D
Sbjct: 464 D 464
>sp|B0R4D3|TOP6B_HALS3 Type 2 DNA topoisomerase 6 subunit B OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=top6B PE=3 SV=1
Length = 804
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 154 QMDDVQVENLIVEVEGKLENAGDNAK-TADSCDRFK-RALENQSELQDKSY---SRENTW 208
Q DD V L + K E+ GD + T D+ D + RA EN +E D + +REN
Sbjct: 404 QKDDATVRGLAERIAAKFESGGDTDRVTRDTLDEYVFRAAENTAEYADATIGETARENVA 463
Query: 209 D 209
D
Sbjct: 464 D 464
>sp|Q90827|NEL_CHICK Protein NEL OS=Gallus gallus GN=NEL PE=2 SV=1
Length = 816
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 135 LNTSSLHQERNYGYGGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALENQ 194
+ T+ +RN +G +G M DVQ L+V +G + D +T +C+ F ++
Sbjct: 185 VGTTFWLGQRNNAHGYFKGIMQDVQ---LLVMPQGFISQCPDLNRTCPTCNDFHGLVQKI 241
Query: 195 SELQD 199
ELQD
Sbjct: 242 MELQD 246
>sp|Q56313|RUVB_THEMA Holliday junction ATP-dependent DNA helicase RuvB OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=ruvB PE=1 SV=1
Length = 334
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 33 MDVDLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCE 92
M+V +++E + +R+ ++ I G P+ ++ S GV++D + +Y PY
Sbjct: 247 MEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGF 306
Query: 93 LMRT 96
L RT
Sbjct: 307 LART 310
>sp|Q61220|NELL2_MOUSE Protein kinase C-binding protein NELL2 OS=Mus musculus GN=Nell2
PE=2 SV=2
Length = 816
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 135 LNTSSLHQERNYGYGGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALENQ 194
L T+ +RN +G +G M DV V +V +G + D +T +C+ F ++
Sbjct: 185 LGTTFWLGQRNNAHGYFKGIMQDVHV---LVMPQGFIAQCPDLNRTCPTCNDFHGLVQKI 241
Query: 195 SELQD 199
ELQD
Sbjct: 242 MELQD 246
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid
PE=1 SV=1
Length = 1838
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 22 NHRGSGRSR----DFMDVDLLEEEPCIKCNRRD--ESLLVCIQSGCPISVHENCLSCGVK 75
N RG+ + + + VD L + C CNR D ES+L+C GC S H CL +
Sbjct: 426 NTRGASQKKGGEPPALIVDPLMKYICHICNRGDVEESMLLC--DGCDDSYHTFCLLPPLT 483
Query: 76 SDDVGNIYCP 85
S G CP
Sbjct: 484 SIPKGEWLCP 493
>sp|O88491|NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20
specific OS=Mus musculus GN=Nsd1 PE=1 SV=1
Length = 2588
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 27 GRSRDFMDVDLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPY 86
G+ R +V E+ C C + L+ C + GCP H +CL+ + G CP
Sbjct: 2003 GKRRSQGEVTKEREDECFSCGDAGQ-LVSCKKPGCPKVYHADCLN--LTKRPAGKWECP- 2058
Query: 87 FWYKCEL 93
W++C++
Sbjct: 2059 -WHQCDV 2064
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1
Length = 410
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 113 FIDPKSFTGDKKENCRTD-KGKELNTSSLHQERNYGYGGCEGQMDDVQVENLIVEVEGKL 171
+ P +FTG K + G L T+ L Q +++G ++ ++V+NL++ +GKL
Sbjct: 84 LVGPLNFTGPCKGDVTIQVNGNLLATTDLSQYKDHG-----NWIEILRVDNLVITGKGKL 138
Query: 172 ENAGDNAKTADSC 184
+ G + +SC
Sbjct: 139 DGQGPAVWSKNSC 151
>sp|A7STV9|SLX1_NEMVE Structure-specific endonuclease subunit SLX1 homolog
OS=Nematostella vectensis GN=v1g174298 PE=3 SV=1
Length = 270
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 39 EEEPCIKC---NRRDESLLVCIQSGCPISVHENCLS 71
+E CIKC + DE L+ C +SGC ++ H CL+
Sbjct: 175 HKEKCIKCLDVIKIDEKLIRCPKSGCTMTAHMFCLA 210
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,571,387
Number of Sequences: 539616
Number of extensions: 3497611
Number of successful extensions: 5908
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 5895
Number of HSP's gapped (non-prelim): 38
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)