BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041297
         (379 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1O50|A Chain A, Crystal Structure Of A Cbs Domain-Containing Protein
           (Tm0935) From Thermotoga Maritima At 1.87 A Resolution
          Length = 157

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 186 IHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227
           +H D P   A+ L+  ++I++  V  VDE+G +VGD++   +
Sbjct: 108 VHMDTPLEEALKLMIDNNIQEMPV--VDEKGEIVGDLNSLEI 147


>pdb|1ZNC|A Chain A, Human Carbonic Anhydrase Iv
 pdb|1ZNC|B Chain B, Human Carbonic Anhydrase Iv
 pdb|3F7B|A Chain A, Crystal Structure Of Soluble Domain Of Ca4 In Complex With
           S Molecule.
 pdb|3F7B|B Chain B, Crystal Structure Of Soluble Domain Of Ca4 In Complex With
           S Molecule.
 pdb|3F7U|A Chain A, Crystal Structure Of Soluble Domain Of Ca4 In Complex With
           S Molecule.
 pdb|3F7U|B Chain B, Crystal Structure Of Soluble Domain Of Ca4 In Complex With
           S Molecule.
 pdb|3F7U|C Chain C, Crystal Structure Of Soluble Domain Of Ca4 In Complex With
           S Molecule.
 pdb|3F7U|D Chain D, Crystal Structure Of Soluble Domain Of Ca4 In Complex With
           S Molecule.
 pdb|3FW3|A Chain A, Crystal Structure Of Soluble Domain Of Ca4 In Complex With
           D
 pdb|3FW3|B Chain B, Crystal Structure Of Soluble Domain Of Ca4 In Complex With
           D
          Length = 266

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 14/87 (16%)

Query: 92  KDSGIVRHLKPS----------ASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHN 141
           K+ G  R++K +          A L+EA   +  G Q LV   + I   PKP + +T   
Sbjct: 127 KEKGTSRNVKEAQDPEDEIAVLAFLVEAGTQVNEGFQPLVEALSNI---PKPEMSTTMAE 183

Query: 142 DSEYCWLTQEDLIRYFLNFIG-LLNPT 167
            S    L +E+ +R++  ++G L  PT
Sbjct: 184 SSLLDLLPKEEKLRHYFRYLGSLTTPT 210


>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
           With The Nucleosome Core Particle
 pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
           With The Nucleosome Core Particle
          Length = 423

 Score = 28.1 bits (61), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 98  RHLKPSASLLEAVDLLLGGVQNLVILPAG 126
           + L P A + +AVD+  GG+ NLV+  +G
Sbjct: 66  KRLSPVAGIPDAVDISAGGMHNLVLTKSG 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,537,441
Number of Sequences: 62578
Number of extensions: 356064
Number of successful extensions: 983
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 4
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)