BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041297
         (379 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q84WQ5|CBSX5_ARATH CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana
           GN=CBSX5 PE=2 SV=2
          Length = 391

 Score =  192 bits (488), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 127/346 (36%), Positives = 197/346 (56%), Gaps = 51/346 (14%)

Query: 28  ALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-- 85
           A+ ALK   ++++++W+ +H             D +++  C C+GK+ M D+I  L    
Sbjct: 33  AIAALKSSEDTFLSVWNCNH-------------DDDNNTECECLGKISMADVICHLSKDH 79

Query: 86  --CFCSF--------AKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSL 135
               C+          K   IV H++PS SL+EA+DL++ G QNL++      +  KP  
Sbjct: 80  DHSLCALNSSVSVLLPKTRSIVLHVQPSCSLIEAIDLIIKGAQNLIV-----PIHTKPYT 134

Query: 136 KSTFHNDS------------EYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDA-G 182
           K   HND+             +CW+TQED+I++ L FI   +P P   ++   +I+    
Sbjct: 135 KKKQHNDNVSVTTTTHSNGQRFCWITQEDIIQFLLGFIAAFSPLPAMSLSDLGVINSTHT 194

Query: 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEG-----RLVGDISPFSLNSCDETVAAA 237
           ++A+ Y   A+  +  ++ +   QTSVA+VD EG      L+G+ISP +L  CDET AAA
Sbjct: 195 VVAVDYHSSASAVVSAVSNALAVQTSVAVVDGEGDDPFTSLIGEISPMTLTCCDETAAAA 254

Query: 238 IATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSD 297
           +ATL AGDLMAY+D   P + LV++V+ RL++K ++GL+ L +    +SS S S+  SS+
Sbjct: 255 VATLSAGDLMAYIDGANPPESLVQIVRNRLEDKGLIGLMSLFD---SLSSYSTSSGYSSE 311

Query: 298 EESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARR 343
           EE+   +    RS   SAR+  +SEAIVC P SSLMAV++QA+A R
Sbjct: 312 EEAPVRTTSYGRSMSSSARMARKSEAIVCNPKSSLMAVMIQAVAHR 357


>sp|Q8GZA4|CBSX6_ARATH CBS domain-containing protein CBSX6 OS=Arabidopsis thaliana
           GN=CBSX6 PE=1 SV=1
          Length = 425

 Score = 44.3 bits (103), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 108/260 (41%), Gaps = 73/260 (28%)

Query: 28  ALLALKRLNESYINIWSSDHSARKRKAAA-ANIDDHEDSAGCSCIGKVCMVDIITFLCPC 86
           A+ A+    E  I +W      RKR   +     ++ +      +G +  +DI+ FL   
Sbjct: 32  AIRAIGESTECGIPVW------RKRTTPSLPGFVENSEMRQQRFVGILNSLDIVAFLAKT 85

Query: 87  FC-------------SFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLV------------ 121
            C               + D+ +++ + P   L++A++++  GV+ L+            
Sbjct: 86  ECLQEEKAMKIPVSEVVSPDNTLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWRGMSK 145

Query: 122 ---ILPAGIKLQP----------------KPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG 162
              IL  G  L+                 +P+   T   D ++C L++ED+IR+ +  +G
Sbjct: 146 RFSILYNGKWLKNSENSSSSSGLSADSTNRPTTSMTSSRD-KFCCLSREDVIRFLIGVLG 204

Query: 163 LLNPTPNQPINSHNIID------DAGILAIHYD-----DPAAFAIPLIAQSHIKQTSVAI 211
            L P P   I++  II+      +A + AI        DP+A A+       ++QT    
Sbjct: 205 ALAPLPLTSISTLGIINQNYNFIEASLPAIEATRRPLCDPSAIAV-------LEQTE--- 254

Query: 212 VDEEGRLVGDISPFSLNSCD 231
            +++ +++G+IS   L  CD
Sbjct: 255 NEQQFKIIGEISASKLWKCD 274


>sp|Q7UA23|MUTS_SYNPX DNA mismatch repair protein MutS OS=Synechococcus sp. (strain
           WH8102) GN=mutS PE=3 SV=1
          Length = 900

 Score = 34.3 bits (77), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 89/230 (38%), Gaps = 47/230 (20%)

Query: 109 AVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTP 168
           A D+ LG   +LV+L       P  S KS        C+L Q  LI+  L  IG   P  
Sbjct: 698 ANDVHLGSGTDLVVLTG-----PNASGKS--------CYLRQIGLIQ-LLAQIGSWVPAA 743

Query: 169 NQPIN-SHNIIDDAGILAIHYDDPAA----FAIPLIAQS----HIKQTSVAIVDEEGRLV 219
              I  +  I    G +    DD AA    F + +   +    H  + S+ ++DE GR  
Sbjct: 744 KARIGIADRIFTRVGAV----DDLAAGQSTFMVEMAETANILHHATELSLVLLDEIGRGT 799

Query: 220 GDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELM 279
                 S       +A A++  LAGDL A         +L  L  +R +  N   L+E  
Sbjct: 800 ATFDGLS-------IAWAVSEHLAGDLRARTVFATHYHELNNLANERANVANFQVLVEET 852

Query: 280 EDDL----EISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIV 325
            DDL     +S G  S S   +         +AR  G    VV R+  ++
Sbjct: 853 GDDLLFLHRVSQGGASRSYGIE---------AARLAGVPTPVVQRARQVL 893


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,818,840
Number of Sequences: 539616
Number of extensions: 5419317
Number of successful extensions: 15695
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 15664
Number of HSP's gapped (non-prelim): 27
length of query: 379
length of database: 191,569,459
effective HSP length: 119
effective length of query: 260
effective length of database: 127,355,155
effective search space: 33112340300
effective search space used: 33112340300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)