Query 041297
Match_columns 379
No_of_seqs 79 out of 81
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:45:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 99.9 3.7E-25 8.1E-30 221.6 14.9 248 15-363 77-352 (381)
2 cd04627 CBS_pair_14 The CBS do 98.8 5.6E-08 1.2E-12 79.2 9.5 115 97-229 3-122 (123)
3 cd04642 CBS_pair_29 The CBS do 98.5 4.9E-07 1.1E-11 74.1 8.7 115 97-230 3-126 (126)
4 cd04618 CBS_pair_5 The CBS dom 98.5 6.7E-07 1.5E-11 72.0 8.2 93 17-156 4-98 (98)
5 cd04619 CBS_pair_6 The CBS dom 98.3 4.5E-06 9.8E-11 67.3 10.0 107 97-228 3-112 (114)
6 cd04801 CBS_pair_M50_like This 98.3 4.8E-06 1E-10 66.6 10.1 108 97-228 3-112 (114)
7 cd04630 CBS_pair_17 The CBS do 98.3 7.3E-06 1.6E-10 65.7 9.5 108 97-228 3-112 (114)
8 cd04618 CBS_pair_5 The CBS dom 98.3 6.3E-06 1.4E-10 66.3 8.9 91 97-228 3-96 (98)
9 cd04603 CBS_pair_KefB_assoc Th 98.2 7E-06 1.5E-10 66.1 9.1 106 97-228 3-109 (111)
10 cd04588 CBS_pair_CAP-ED_DUF294 98.2 1E-05 2.2E-10 64.0 9.5 104 97-228 3-108 (110)
11 cd04641 CBS_pair_28 The CBS do 98.2 4.8E-06 1E-10 67.5 7.7 113 183-363 3-115 (120)
12 cd04639 CBS_pair_26 The CBS do 98.2 8.3E-06 1.8E-10 64.6 8.5 107 97-229 3-110 (111)
13 cd04641 CBS_pair_28 The CBS do 98.2 1.1E-05 2.4E-10 65.4 9.3 111 97-228 3-118 (120)
14 cd04607 CBS_pair_NTP_transfera 98.2 1.3E-05 2.9E-10 63.9 9.6 107 98-229 5-112 (113)
15 cd04585 CBS_pair_ACT_assoc2 Th 98.2 4.8E-06 1E-10 66.2 6.9 115 183-363 3-117 (122)
16 cd04617 CBS_pair_4 The CBS dom 98.2 1.7E-05 3.6E-10 64.3 10.1 108 97-228 3-116 (118)
17 cd04643 CBS_pair_30 The CBS do 98.2 6.8E-06 1.5E-10 65.4 7.0 110 97-228 3-114 (116)
18 cd02205 CBS_pair The CBS domai 98.1 2.3E-05 5E-10 60.1 9.2 108 97-228 3-111 (113)
19 cd04590 CBS_pair_CorC_HlyC_ass 98.1 1.8E-05 4E-10 62.6 8.8 105 97-228 3-109 (111)
20 cd04803 CBS_pair_15 The CBS do 98.1 1.8E-05 3.8E-10 63.7 8.5 112 97-228 3-120 (122)
21 cd04615 CBS_pair_2 The CBS dom 98.1 2.4E-05 5.3E-10 62.1 9.1 107 98-228 4-111 (113)
22 cd04642 CBS_pair_29 The CBS do 98.1 2.2E-05 4.9E-10 64.3 8.6 119 183-363 3-121 (126)
23 cd04620 CBS_pair_7 The CBS dom 98.1 4E-05 8.7E-10 61.2 9.6 105 98-228 4-113 (115)
24 cd04605 CBS_pair_MET2_assoc Th 98.0 3.5E-05 7.6E-10 60.9 9.1 104 97-228 4-108 (110)
25 cd04636 CBS_pair_23 The CBS do 98.0 2.2E-05 4.8E-10 64.9 8.3 111 97-228 3-130 (132)
26 cd04600 CBS_pair_HPP_assoc Thi 98.0 2.8E-05 6.1E-10 62.7 8.7 112 97-228 4-122 (124)
27 cd04609 CBS_pair_PALP_assoc2 T 98.0 2.6E-05 5.6E-10 61.1 8.2 107 95-228 1-108 (110)
28 cd04586 CBS_pair_BON_assoc Thi 98.0 1.3E-05 2.8E-10 66.5 6.8 111 97-228 4-133 (135)
29 cd04626 CBS_pair_13 The CBS do 98.0 3.8E-05 8.2E-10 60.9 8.9 106 97-228 3-109 (111)
30 cd04631 CBS_pair_18 The CBS do 98.0 2.3E-05 5.1E-10 63.2 7.8 112 97-228 3-123 (125)
31 cd04611 CBS_pair_PAS_GGDEF_DUF 98.0 5.5E-05 1.2E-09 59.5 9.5 106 97-228 3-109 (111)
32 cd04587 CBS_pair_CAP-ED_DUF294 98.0 4.9E-05 1.1E-09 60.2 9.3 108 97-228 3-111 (113)
33 cd04623 CBS_pair_10 The CBS do 98.0 5.4E-05 1.2E-09 59.5 9.5 107 97-227 3-110 (113)
34 cd04603 CBS_pair_KefB_assoc Th 98.0 2.8E-05 6.1E-10 62.5 7.7 104 183-363 3-106 (111)
35 cd04593 CBS_pair_EriC_assoc_ba 98.0 6.2E-05 1.4E-09 60.2 9.5 106 98-227 4-112 (115)
36 cd04604 CBS_pair_KpsF_GutQ_ass 98.0 4.8E-05 1E-09 60.1 8.7 108 97-228 4-112 (114)
37 cd04624 CBS_pair_11 The CBS do 98.0 7.2E-05 1.6E-09 59.3 9.7 104 98-228 4-110 (112)
38 cd04612 CBS_pair_SpoIVFB_EriC_ 98.0 5.1E-05 1.1E-09 59.7 8.6 108 97-230 3-111 (111)
39 cd04582 CBS_pair_ABC_OpuCA_ass 97.9 7.1E-05 1.5E-09 58.7 9.2 100 98-228 4-104 (106)
40 cd04629 CBS_pair_16 The CBS do 97.9 3.4E-05 7.4E-10 61.2 7.3 109 97-228 3-112 (114)
41 cd04601 CBS_pair_IMPDH This cd 97.9 6.5E-05 1.4E-09 59.0 8.8 101 183-363 4-105 (110)
42 cd04632 CBS_pair_19 The CBS do 97.9 5.6E-05 1.2E-09 61.8 8.6 109 98-228 4-126 (128)
43 cd04589 CBS_pair_CAP-ED_DUF294 97.9 9.7E-05 2.1E-09 58.6 9.6 107 98-230 4-111 (111)
44 cd04585 CBS_pair_ACT_assoc2 Th 97.9 7.1E-05 1.5E-09 59.5 8.7 111 97-228 3-120 (122)
45 cd04596 CBS_pair_DRTGG_assoc T 97.9 4.6E-05 1E-09 60.5 7.5 102 97-228 4-106 (108)
46 cd04614 CBS_pair_1 The CBS dom 97.9 8E-05 1.7E-09 59.3 8.6 89 183-363 3-91 (96)
47 cd04625 CBS_pair_12 The CBS do 97.9 0.00012 2.5E-09 58.1 9.1 107 97-228 3-110 (112)
48 cd04619 CBS_pair_6 The CBS dom 97.9 0.00014 3E-09 58.6 9.7 107 183-363 3-109 (114)
49 cd04621 CBS_pair_8 The CBS dom 97.9 7.7E-05 1.7E-09 63.1 8.5 111 97-228 3-133 (135)
50 cd04633 CBS_pair_20 The CBS do 97.8 7.1E-05 1.5E-09 60.1 7.6 110 97-228 3-119 (121)
51 cd04583 CBS_pair_ABC_OpuCA_ass 97.8 0.00017 3.8E-09 56.5 9.5 102 98-228 5-107 (109)
52 cd04622 CBS_pair_9 The CBS dom 97.8 5.7E-05 1.2E-09 59.8 6.8 106 183-363 3-108 (113)
53 cd04635 CBS_pair_22 The CBS do 97.8 0.00014 3.1E-09 58.4 9.1 115 183-363 3-117 (122)
54 cd04611 CBS_pair_PAS_GGDEF_DUF 97.8 7E-05 1.5E-09 58.9 6.8 104 183-363 3-106 (111)
55 cd04800 CBS_pair_CAP-ED_DUF294 97.8 0.00016 3.6E-09 57.1 8.8 106 97-228 3-109 (111)
56 cd04614 CBS_pair_1 The CBS dom 97.8 9.6E-05 2.1E-09 58.8 7.5 91 97-228 3-94 (96)
57 cd04637 CBS_pair_24 The CBS do 97.8 0.00012 2.7E-09 59.0 8.1 110 97-227 3-119 (122)
58 COG0517 FOG: CBS domain [Gener 97.8 0.00027 5.8E-09 56.1 9.7 104 97-227 9-116 (117)
59 cd04594 CBS_pair_EriC_assoc_ar 97.7 0.00017 3.8E-09 57.1 8.1 97 99-228 5-102 (104)
60 cd04605 CBS_pair_MET2_assoc Th 97.7 0.00023 5.1E-09 56.2 8.8 102 183-363 4-105 (110)
61 cd04595 CBS_pair_DHH_polyA_Pol 97.7 0.00024 5.1E-09 56.3 8.8 104 97-228 4-108 (110)
62 cd04622 CBS_pair_9 The CBS dom 97.7 0.00029 6.3E-09 55.7 9.2 107 97-228 3-111 (113)
63 PRK10892 D-arabinose 5-phospha 97.7 0.00014 3.1E-09 70.5 8.4 106 181-363 213-318 (326)
64 cd04613 CBS_pair_SpoIVFB_EriC_ 97.7 0.00025 5.4E-09 55.8 8.3 105 98-228 4-112 (114)
65 cd04635 CBS_pair_22 The CBS do 97.7 0.00017 3.6E-09 58.0 7.4 111 97-227 3-119 (122)
66 cd04606 CBS_pair_Mg_transporte 97.7 0.00024 5.2E-09 56.5 8.0 99 100-228 2-106 (109)
67 cd04584 CBS_pair_ACT_assoc Thi 97.7 0.00025 5.4E-09 56.8 8.0 110 97-227 3-118 (121)
68 cd04617 CBS_pair_4 The CBS dom 97.6 0.00017 3.7E-09 58.5 7.1 108 183-363 3-113 (118)
69 PRK11543 gutQ D-arabinose 5-ph 97.6 0.00024 5.3E-09 68.6 9.3 107 97-228 209-316 (321)
70 cd04802 CBS_pair_3 The CBS dom 97.6 0.0006 1.3E-08 54.0 9.9 106 97-227 3-109 (112)
71 cd04590 CBS_pair_CorC_HlyC_ass 97.6 0.00019 4.1E-09 56.8 6.8 103 183-363 3-106 (111)
72 cd04627 CBS_pair_14 The CBS do 97.6 0.0004 8.6E-09 56.5 8.9 116 183-364 3-119 (123)
73 cd04803 CBS_pair_15 The CBS do 97.6 0.0002 4.2E-09 57.6 7.0 115 183-363 3-117 (122)
74 cd04636 CBS_pair_23 The CBS do 97.6 0.00015 3.3E-09 59.9 6.3 100 17-156 4-132 (132)
75 cd04599 CBS_pair_GGDEF_assoc2 97.6 0.00031 6.8E-09 54.8 7.7 100 97-228 3-103 (105)
76 cd04801 CBS_pair_M50_like This 97.6 0.00032 6.8E-09 56.1 7.8 107 183-363 3-109 (114)
77 cd04592 CBS_pair_EriC_assoc_eu 97.6 0.00039 8.5E-09 59.6 8.8 100 97-216 3-119 (133)
78 cd04600 CBS_pair_HPP_assoc Thi 97.6 0.00052 1.1E-08 55.3 8.8 118 180-363 2-119 (124)
79 cd04596 CBS_pair_DRTGG_assoc T 97.5 0.00071 1.5E-08 53.7 9.2 100 183-363 4-103 (108)
80 TIGR00393 kpsF KpsF/GutQ famil 97.5 0.00048 1E-08 64.5 9.5 102 97-223 166-268 (268)
81 COG2524 Predicted transcriptio 97.5 0.00017 3.6E-09 70.8 6.5 104 15-158 181-291 (294)
82 PRK10892 D-arabinose 5-phospha 97.5 0.00038 8.3E-09 67.6 9.0 108 96-228 213-321 (326)
83 cd04582 CBS_pair_ABC_OpuCA_ass 97.5 0.00057 1.2E-08 53.6 8.4 99 183-363 3-101 (106)
84 cd04610 CBS_pair_ParBc_assoc T 97.5 0.00055 1.2E-08 53.6 8.3 101 97-228 4-105 (107)
85 cd04631 CBS_pair_18 The CBS do 97.5 0.00039 8.5E-09 56.1 7.3 117 183-363 3-120 (125)
86 cd04623 CBS_pair_10 The CBS do 97.5 0.00033 7.2E-09 55.0 6.7 106 183-363 3-108 (113)
87 PRK11543 gutQ D-arabinose 5-ph 97.5 0.0004 8.7E-09 67.1 8.5 105 183-363 209-313 (321)
88 cd04630 CBS_pair_17 The CBS do 97.5 0.00027 5.9E-09 56.6 6.2 106 183-363 3-109 (114)
89 cd04602 CBS_pair_IMPDH_2 This 97.5 0.00055 1.2E-08 55.0 8.0 106 97-228 4-112 (114)
90 cd04632 CBS_pair_19 The CBS do 97.5 0.00067 1.4E-08 55.4 8.6 119 183-363 3-123 (128)
91 cd04640 CBS_pair_27 The CBS do 97.5 0.00037 8.1E-09 57.2 7.1 110 97-228 3-124 (126)
92 cd04633 CBS_pair_20 The CBS do 97.5 0.00032 7E-09 56.3 6.2 100 16-156 3-121 (121)
93 cd04601 CBS_pair_IMPDH This cd 97.4 0.00095 2.1E-08 52.4 8.4 103 97-228 4-108 (110)
94 cd04598 CBS_pair_GGDEF_assoc T 97.4 0.00054 1.2E-08 54.8 7.1 109 99-227 5-116 (119)
95 cd04612 CBS_pair_SpoIVFB_EriC_ 97.4 0.00052 1.1E-08 54.0 6.7 104 183-363 3-106 (111)
96 cd04615 CBS_pair_2 The CBS dom 97.4 0.00077 1.7E-08 53.5 7.7 106 183-363 3-108 (113)
97 cd04608 CBS_pair_PALP_assoc Th 97.4 0.00051 1.1E-08 57.1 7.0 110 97-228 4-121 (124)
98 cd04589 CBS_pair_CAP-ED_DUF294 97.4 0.0006 1.3E-08 54.0 7.0 100 16-156 3-111 (111)
99 COG3448 CBS-domain-containing 97.4 0.00039 8.4E-09 69.7 7.1 112 97-228 255-368 (382)
100 cd04599 CBS_pair_GGDEF_assoc2 97.4 0.00093 2E-08 52.1 7.9 98 17-155 4-104 (105)
101 cd04639 CBS_pair_26 The CBS do 97.4 0.0012 2.7E-08 52.1 8.6 104 183-363 3-106 (111)
102 cd04593 CBS_pair_EriC_assoc_ba 97.4 0.00037 8E-09 55.8 5.5 106 183-363 3-110 (115)
103 cd04640 CBS_pair_27 The CBS do 97.4 0.00094 2E-08 54.9 7.9 45 183-229 3-47 (126)
104 PRK14869 putative manganese-de 97.3 0.0009 2E-08 69.8 9.5 176 15-229 77-301 (546)
105 cd04610 CBS_pair_ParBc_assoc T 97.3 0.0019 4.1E-08 50.5 9.0 99 183-363 4-102 (107)
106 cd02205 CBS_pair The CBS domai 97.3 0.00077 1.7E-08 51.6 6.6 105 16-156 3-113 (113)
107 cd04604 CBS_pair_KpsF_GutQ_ass 97.3 0.00059 1.3E-08 53.9 6.1 106 183-363 4-109 (114)
108 cd04586 CBS_pair_BON_assoc Thi 97.3 0.0016 3.5E-08 54.0 8.6 126 183-362 4-129 (135)
109 cd04609 CBS_pair_PALP_assoc2 T 97.3 0.00067 1.5E-08 53.0 6.0 101 15-156 2-110 (110)
110 cd04606 CBS_pair_Mg_transporte 97.3 0.0015 3.2E-08 52.0 7.7 41 323-363 63-103 (109)
111 PRK07107 inosine 5-monophospha 97.2 0.00091 2E-08 70.4 8.3 104 184-364 108-214 (502)
112 PRK01862 putative voltage-gate 97.2 0.00081 1.7E-08 70.8 7.9 124 168-369 445-570 (574)
113 cd04626 CBS_pair_13 The CBS do 97.2 0.0017 3.8E-08 51.4 8.0 104 183-363 3-106 (111)
114 cd04583 CBS_pair_ABC_OpuCA_ass 97.2 0.0027 5.8E-08 49.7 9.0 101 183-363 4-104 (109)
115 PRK05567 inosine 5'-monophosph 97.2 0.0012 2.6E-08 68.7 9.0 105 180-364 95-199 (486)
116 PRK15094 magnesium/cobalt effl 97.2 0.00094 2E-08 65.4 7.6 108 15-161 78-192 (292)
117 TIGR03520 GldE gliding motilit 97.2 0.003 6.4E-08 64.5 11.4 142 14-199 201-348 (408)
118 cd04587 CBS_pair_CAP-ED_DUF294 97.2 0.0023 5E-08 50.6 8.2 106 183-363 3-108 (113)
119 PRK07807 inosine 5-monophospha 97.2 0.002 4.2E-08 67.6 9.9 105 178-364 95-199 (479)
120 cd04621 CBS_pair_8 The CBS dom 97.2 0.0016 3.4E-08 55.1 7.5 100 17-156 4-135 (135)
121 cd04584 CBS_pair_ACT_assoc Thi 97.2 0.0025 5.3E-08 51.0 8.1 114 183-363 3-116 (121)
122 cd04637 CBS_pair_24 The CBS do 97.2 0.0035 7.5E-08 50.5 9.0 115 183-363 3-117 (122)
123 PRK01862 putative voltage-gate 97.1 0.0013 2.9E-08 69.2 8.3 116 86-228 449-567 (574)
124 PRK07107 inosine 5-monophospha 97.1 0.0018 3.9E-08 68.2 8.9 110 98-230 108-218 (502)
125 cd04643 CBS_pair_30 The CBS do 97.1 0.0021 4.6E-08 51.0 7.3 109 183-363 3-111 (116)
126 cd04591 CBS_pair_EriC_assoc_eu 97.1 0.0034 7.3E-08 50.6 8.4 100 95-228 2-103 (105)
127 cd04624 CBS_pair_11 The CBS do 97.1 0.0054 1.2E-07 48.5 9.5 104 183-362 3-106 (112)
128 cd04634 CBS_pair_21 The CBS do 97.1 0.0034 7.4E-08 53.1 8.7 110 97-228 3-141 (143)
129 cd04594 CBS_pair_EriC_assoc_ar 97.1 0.0028 6E-08 50.2 7.7 100 15-155 2-103 (104)
130 cd04607 CBS_pair_NTP_transfera 97.1 0.0051 1.1E-07 49.0 9.2 105 183-363 4-108 (113)
131 PRK14869 putative manganese-de 97.1 0.0029 6.4E-08 66.1 10.0 204 154-363 48-297 (546)
132 cd04602 CBS_pair_IMPDH_2 This 97.1 0.0022 4.7E-08 51.5 7.1 103 183-363 4-109 (114)
133 cd04595 CBS_pair_DHH_polyA_Pol 97.1 0.002 4.3E-08 51.0 6.7 102 183-363 4-105 (110)
134 cd04625 CBS_pair_12 The CBS do 97.1 0.0021 4.5E-08 50.9 6.7 98 18-156 5-112 (112)
135 cd04588 CBS_pair_CAP-ED_DUF294 97.0 0.0028 6E-08 50.0 7.3 84 17-125 4-94 (110)
136 TIGR01302 IMP_dehydrog inosine 97.0 0.0024 5.3E-08 65.9 8.7 105 180-364 88-195 (450)
137 PLN02274 inosine-5'-monophosph 97.0 0.0025 5.3E-08 67.2 8.7 113 174-366 103-218 (505)
138 TIGR00400 mgtE Mg2+ transporte 97.0 0.0027 5.9E-08 65.4 8.8 121 162-364 123-246 (449)
139 cd04598 CBS_pair_GGDEF_assoc T 97.0 0.0018 3.9E-08 51.8 5.6 110 183-364 3-115 (119)
140 PF00571 CBS: CBS domain CBS d 97.0 0.0012 2.5E-08 47.7 4.1 49 178-229 5-53 (57)
141 TIGR00393 kpsF KpsF/GutQ famil 96.9 0.0027 5.8E-08 59.5 7.4 103 183-361 166-268 (268)
142 PRK07807 inosine 5-monophospha 96.9 0.0032 6.8E-08 66.1 8.5 103 97-229 99-202 (479)
143 cd04629 CBS_pair_16 The CBS do 96.9 0.003 6.5E-08 50.0 6.5 107 183-363 3-109 (114)
144 cd04620 CBS_pair_7 The CBS dom 96.9 0.0034 7.3E-08 50.0 6.7 99 17-155 4-114 (115)
145 PLN02274 inosine-5'-monophosph 96.9 0.0033 7.2E-08 66.3 8.5 106 97-227 110-217 (505)
146 cd04613 CBS_pair_SpoIVFB_EriC_ 96.8 0.003 6.6E-08 49.7 6.0 106 183-363 3-109 (114)
147 TIGR01303 IMP_DH_rel_1 IMP deh 96.8 0.0065 1.4E-07 63.7 9.7 104 178-364 94-197 (475)
148 cd04638 CBS_pair_25 The CBS do 96.8 0.0097 2.1E-07 46.8 8.6 101 97-228 3-104 (106)
149 TIGR00400 mgtE Mg2+ transporte 96.8 0.0045 9.8E-08 63.8 8.4 103 97-229 141-249 (449)
150 cd04802 CBS_pair_3 The CBS dom 96.8 0.0057 1.2E-07 48.4 6.9 85 17-126 4-98 (112)
151 PF00571 CBS: CBS domain CBS d 96.7 0.0027 6E-08 45.7 4.6 43 322-364 8-50 (57)
152 cd04634 CBS_pair_21 The CBS do 96.7 0.0084 1.8E-07 50.8 7.9 136 183-363 3-138 (143)
153 TIGR01302 IMP_dehydrog inosine 96.7 0.0079 1.7E-07 62.2 9.1 105 97-229 90-198 (450)
154 TIGR01137 cysta_beta cystathio 96.7 0.0071 1.5E-07 61.3 8.6 104 97-227 345-449 (454)
155 PRK05567 inosine 5'-monophosph 96.7 0.019 4E-07 60.0 11.8 107 14-158 95-205 (486)
156 cd04608 CBS_pair_PALP_assoc Th 96.6 0.0026 5.6E-08 52.9 4.1 111 17-157 5-124 (124)
157 PTZ00314 inosine-5'-monophosph 96.5 0.011 2.4E-07 62.2 9.1 109 176-364 101-212 (495)
158 PTZ00314 inosine-5'-monophosph 96.5 0.012 2.5E-07 62.0 9.1 105 97-229 106-215 (495)
159 cd04800 CBS_pair_CAP-ED_DUF294 96.4 0.011 2.4E-07 46.6 6.7 103 183-362 3-105 (111)
160 smart00116 CBS Domain in cysta 96.4 0.0046 1E-07 40.6 3.8 41 323-363 2-42 (49)
161 TIGR01303 IMP_DH_rel_1 IMP deh 96.4 0.012 2.5E-07 61.8 8.6 102 97-229 98-200 (475)
162 cd04592 CBS_pair_EriC_assoc_eu 96.3 0.0098 2.1E-07 51.0 6.0 91 16-127 3-119 (133)
163 COG2524 Predicted transcriptio 96.1 0.0089 1.9E-07 59.0 5.4 121 161-362 163-283 (294)
164 cd04597 CBS_pair_DRTGG_assoc2 96.1 0.0081 1.7E-07 49.5 4.4 70 155-229 39-112 (113)
165 cd04591 CBS_pair_EriC_assoc_eu 96.0 0.02 4.4E-07 46.1 6.1 100 16-156 4-105 (105)
166 TIGR03520 GldE gliding motilit 96.0 0.031 6.7E-07 57.2 8.8 114 86-228 193-307 (408)
167 TIGR01186 proV glycine betaine 95.9 0.029 6.4E-07 56.8 8.4 99 99-227 254-353 (363)
168 PRK10070 glycine betaine trans 95.9 0.027 5.8E-07 57.8 8.1 98 100-227 290-388 (400)
169 PRK15094 magnesium/cobalt effl 95.9 0.026 5.6E-07 55.4 7.5 118 169-365 66-184 (292)
170 cd04638 CBS_pair_25 The CBS do 95.7 0.086 1.9E-06 41.4 8.5 99 183-363 3-101 (106)
171 KOG1764 5'-AMP-activated prote 95.5 0.08 1.7E-06 54.2 9.5 120 12-168 235-369 (381)
172 PRK11573 hypothetical protein; 95.2 0.064 1.4E-06 55.1 8.0 144 12-195 195-345 (413)
173 TIGR01137 cysta_beta cystathio 94.8 0.088 1.9E-06 53.5 7.6 101 15-157 344-453 (454)
174 COG0517 FOG: CBS domain [Gener 94.8 0.12 2.5E-06 40.9 6.7 88 14-126 7-103 (117)
175 COG3448 CBS-domain-containing 94.2 0.2 4.3E-06 50.8 8.3 107 15-160 254-374 (382)
176 COG1253 TlyC Hemolysins and re 94.1 0.23 4.9E-06 51.1 8.7 113 13-162 215-332 (429)
177 COG2905 Predicted signal-trans 94.1 0.13 2.8E-06 55.5 7.0 102 16-158 159-270 (610)
178 TIGR01186 proV glycine betaine 94.1 0.34 7.4E-06 49.2 9.8 107 183-370 252-358 (363)
179 COG3620 Predicted transcriptio 93.5 0.074 1.6E-06 49.6 3.6 69 149-228 49-117 (187)
180 PRK10070 glycine betaine trans 93.3 0.73 1.6E-05 47.4 10.7 101 186-367 290-390 (400)
181 COG2905 Predicted signal-trans 90.1 1.4 3E-05 48.0 8.7 160 97-282 159-335 (610)
182 smart00116 CBS Domain in cysta 89.9 0.41 9E-06 31.0 3.1 44 183-228 2-45 (49)
183 COG3620 Predicted transcriptio 86.6 1.6 3.5E-05 41.0 5.8 105 94-227 72-179 (187)
184 cd04597 CBS_pair_DRTGG_assoc2 83.9 1.6 3.5E-05 35.8 4.1 42 322-363 67-108 (113)
185 PRK11573 hypothetical protein; 79.3 11 0.00023 39.1 8.9 116 86-227 189-306 (413)
186 COG2239 MgtE Mg/Co/Ni transpor 77.1 2.5 5.4E-05 44.7 3.7 49 177-228 201-249 (451)
187 COG2239 MgtE Mg/Co/Ni transpor 76.8 11 0.00024 39.9 8.4 63 163-228 125-190 (451)
188 COG1253 TlyC Hemolysins and re 71.4 29 0.00062 35.9 9.7 106 95-227 216-323 (429)
189 TIGR03415 ABC_choXWV_ATP choli 66.8 4.6 0.0001 41.5 2.8 44 179-227 332-375 (382)
190 COG4175 ProV ABC-type proline/ 63.9 4.1 8.8E-05 42.1 1.8 43 183-228 337-379 (386)
191 COG4109 Predicted transcriptio 53.4 66 0.0014 33.9 8.3 104 17-159 201-307 (432)
192 smart00594 UAS UAS domain. 44.5 73 0.0016 26.9 6.1 80 104-216 14-97 (122)
193 cd02958 UAS UAS family; UAS is 33.2 1.7E+02 0.0038 24.0 6.5 86 104-222 4-94 (114)
194 smart00559 Ku78 Ku70 and Ku80 32.7 62 0.0013 28.4 3.9 72 142-214 16-93 (140)
195 COG4109 Predicted transcriptio 31.6 67 0.0014 33.9 4.5 53 321-373 257-309 (432)
196 COG0424 Maf Nucleotide-binding 28.1 70 0.0015 30.5 3.7 55 192-255 87-145 (193)
197 PRK05066 arginine repressor; P 27.2 28 0.0006 31.9 0.8 45 147-191 23-74 (156)
198 cd06404 PB1_aPKC PB1 domain is 27.0 45 0.00098 28.0 1.9 33 10-42 42-78 (83)
199 PRK04280 arginine repressor; P 26.2 44 0.00096 30.2 1.9 44 147-190 18-67 (148)
200 cd00789 KU_like Ku-core domain 24.0 80 0.0017 31.0 3.4 72 140-214 65-139 (256)
201 PF13673 Acetyltransf_10: Acet 22.8 84 0.0018 24.8 2.8 31 333-363 32-62 (117)
202 COG1438 ArgR Arginine represso 21.9 29 0.00063 31.9 -0.1 46 147-192 20-71 (150)
203 TIGR02772 Ku_bact Ku protein, 20.5 88 0.0019 30.7 2.9 71 141-214 67-140 (258)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.93 E-value=3.7e-25 Score=221.57 Aligned_cols=248 Identities=21% Similarity=0.285 Sum_probs=194.7
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------- 85 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------- 85 (379)
+-+-|+..+.+.+|+++|..+...+.|+|+.+ .++++||++|.|++.++.+
T Consensus 77 ~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~--------------------~~~~~g~~~~~d~i~~~~~~~~~~~~~~ 136 (381)
T KOG1764|consen 77 KLVVFDTKLSVKKAFNALVQNGVRAAPLWDSK--------------------KQQFVGMLTITDFITVLLRYYKSKSSLD 136 (381)
T ss_pred eeEEeeCCCcHHHHHHHHHhhceeeeccccCc--------------------cceeEEEEEHHHHHHHHHHhhccCCcHH
Confidence 45678899999999999999999999999965 3689999999999999985
Q ss_pred ---------------ccccccCC-CCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEe
Q 041297 86 ---------------CFCSFAKD-SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWL 148 (379)
Q Consensus 86 ---------------VS~li~~~-~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~L 148 (379)
+-.+.... ...+.-+.|..+++++...+. .++||+.|++... +.--+.|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~--------------~~v~~il 202 (381)
T KOG1764|consen 137 NIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPET--------------GEVLYIL 202 (381)
T ss_pred HHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccc--------------cceeeeh
Confidence 11122221 123488999999999998888 7999999977211 1334599
Q ss_pred eHHHHHHHHHhhhcccC--CCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccc
Q 041297 149 TQEDLIRYFLNFIGLLN--PTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFS 226 (379)
Q Consensus 149 TQeDVvRFLl~~ig~l~--p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~ 226 (379)
||--|++|+-++.+.|- ++..+|+.+||+..-+++..+..+.|+++|++.|+.. ..+|+||||..|+++|.+|-+|
T Consensus 203 t~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~--~is~lpvV~~~g~~v~~~s~~D 280 (381)
T KOG1764|consen 203 TQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSER--RISALPVVDENGKKVGNYSRFD 280 (381)
T ss_pred hHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhc--CcCcceEEcCCCceecceehhh
Confidence 99999999999999995 8889999999999977799999999999999999986 4599999999998899999999
Q ss_pred cCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCC
Q 041297 227 LNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSAR 306 (379)
Q Consensus 227 L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~ 306 (379)
... +..-.+.+..+.. . +..
T Consensus 281 v~~-----l~~~~~~~~~~~~-------------~-l~~----------------------------------------- 300 (381)
T KOG1764|consen 281 VIH-----LAREGTYNNLDLS-------------C-LSE----------------------------------------- 300 (381)
T ss_pred hhh-----hhhcCccCccchh-------------H-HHH-----------------------------------------
Confidence 876 1111111110000 0 000
Q ss_pred cCCCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 307 SARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 307 ~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
..+.+.-+..+.++|+++|||.+||+|+++|||||+||||++|.++|||+.-
T Consensus 301 -----~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLs 352 (381)
T KOG1764|consen 301 -----ALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLS 352 (381)
T ss_pred -----HhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHH
Confidence 0001112345579999999999999999999999999999999999999863
No 2
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.76 E-value=5.6e-08 Score=79.20 Aligned_cols=115 Identities=23% Similarity=0.370 Sum_probs=86.0
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCC---Cc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPN---QP 171 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~---~S 171 (379)
+..+.+++++-+|++.|. ++.++++|+++. .+-. =++|+.|+++++............ ..
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~---------------Giv~~~dl~~~~~~~~~~~~~~~~~~~~~ 67 (123)
T cd04627 3 FIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVI---------------GILSQRRLVEFLWENARSFPGLDPLYPIP 67 (123)
T ss_pred ceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEE---------------EEEEHHHHHHHHHHhHHhccchhhhhhhh
Confidence 567899999999999999 578899987754 2210 189999999998765432211111 11
Q ss_pred ccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 172 INSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 172 I~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
+....+...+ +..+..++++.+|++.|.+. +.+.+||||.+|+++|-|+..+|+-
T Consensus 68 ~~~~~~~~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~~~~vGiit~~di~~ 122 (123)
T cd04627 68 LRDLTIGTSD-VISINGDQPLIDALHLMHNE--GISSVAVVDNQGNLIGNISVTDVRL 122 (123)
T ss_pred hhhcccCcCC-ceEeCCCCCHHHHHHHHHHc--CCceEEEECCCCcEEEEEeHHHhhc
Confidence 2222244666 99999999999999999885 4588999999999999999998863
No 3
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.53 E-value=4.9e-07 Score=74.13 Aligned_cols=115 Identities=21% Similarity=0.239 Sum_probs=83.9
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCC-----
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQ----- 170 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~----- 170 (379)
+..++|++++-||++.|. +|+..++|+++.-+- .=++|+.|+.+++.+.-.... .+..
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~---------------~Giv~~~dl~~~~~~~~~~~~-~~~~~~~~~ 66 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKL---------------IGNISASDLKGLLLSPDDLLL-YRTITFKEL 66 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEECCCCcE---------------EEEEEHHHhhhhhcCcchhhc-ccchhhhhh
Confidence 457899999999999988 578888887543111 118999999998865322111 1110
Q ss_pred --ccc-ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCC
Q 041297 171 --PIN-SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSC 230 (379)
Q Consensus 171 --SI~-sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~C 230 (379)
.+. ......++ +..++.+++..+|+++|.+. +...+||||.+|+++|-|+..+|-.|
T Consensus 67 ~~~~~~~~~~~~~~-~~~v~~~~~l~~a~~~~~~~--~~~~l~Vvd~~~~~~Giit~~dil~~ 126 (126)
T cd04642 67 SEKFTDSDGVKSRP-LITCTPSSTLKEVITKLVAN--KVHRVWVVDEEGKPIGVITLTDIISI 126 (126)
T ss_pred hhhcccccccccCC-CeEECCCCcHHHHHHHHHHh--CCcEEEEECCCCCEEEEEEHHHHhcC
Confidence 011 22334566 88999999999999999875 44679999999999999999999877
No 4
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.48 E-value=6.7e-07 Score=71.97 Aligned_cols=93 Identities=20% Similarity=0.318 Sum_probs=75.7
Q ss_pred cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecccccccccCCCCc
Q 041297 17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCPCFCSFAKDSGI 96 (379)
Q Consensus 17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~VS~li~~~~gl 96 (379)
+++....|+.+|++.+.+.+...+||++.+ .++++|+|+.-|++-.+.
T Consensus 4 ~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~--------------------~~~~~Givt~~Dl~~~~~------------ 51 (98)
T cd04618 4 VVFDTKLPVKKAFNALVENGIRSAPLWDSR--------------------KQQFVGMLTITDFILILR------------ 51 (98)
T ss_pred EEECCCCcHHHHHHHHHHcCCceEEEEeCC--------------------CCEEEEEEEHHHHhhhee------------
Confidence 467788999999999999999999999842 246999999999875332
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 156 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF 156 (379)
+.++.|+++|.||++.|. +|+++++|+++. .+- .=.+|+.|+++|
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~---------------~giit~~d~~~~ 98 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTG---------------LYILTSRRILKF 98 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCc---------------eEEeehhhhhcC
Confidence 678999999999999998 799999998754 221 128899998875
No 5
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.35 E-value=4.5e-06 Score=67.28 Aligned_cols=107 Identities=20% Similarity=0.271 Sum_probs=83.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCC--cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG--IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN 173 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~--~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~ 173 (379)
+-.+.|++++.||++.|. .|.+.++|+++. +.. ++|+.|+.+.+.+.-+ ..+..++.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G-----------------~vt~~dl~~~~~~~~~---~~~~~~v~ 62 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAG-----------------VLTKTDVVRQMGRCGG---PGCTAPVE 62 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEE-----------------EEehHHHHHHHhhcCC---CcccCCHH
Confidence 457899999999999998 577888887542 222 9999999997754111 22344555
Q ss_pred ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
++ .+++ +..+..+++..+|++.|.+. +...+||||.+|+++|-|+..++-
T Consensus 63 ~~--~~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~~~~~Gvi~~~dl~ 112 (114)
T cd04619 63 NV--MTRA-VVSCRPGDLLHDVWQVMKQR--GLKNIPVVDENARPLGVLNARDAL 112 (114)
T ss_pred HH--hcCC-CeeECCCCCHHHHHHHHHHc--CCCeEEEECCCCcEEEEEEhHhhc
Confidence 54 4566 88899999999999999885 458899999999999999988874
No 6
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.34 E-value=4.8e-06 Score=66.58 Aligned_cols=108 Identities=14% Similarity=0.185 Sum_probs=80.7
Q ss_pred eEEeCCCCchhHHHHHHh-cC-ccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GG-VQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS 174 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G-~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s 174 (379)
+..++|++++-+|++.|. ++ ...++|+++.-+- +=++|+.|+++++.+.. ...++.+
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~---------------~G~v~~~dl~~~~~~~~------~~~~v~~ 61 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRY---------------VGIISLADLRAIPTSQW------AQTTVIQ 61 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcE---------------EEEEEHHHHHHHHHhhc------cccchhh
Confidence 457899999999999986 43 7777777542111 12999999999875321 1345665
Q ss_pred cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+--.... +..+..+++..+|++.|++. +...+|||+.+|+++|-++..++-
T Consensus 62 ~~~~~~~-~~~v~~~~~l~~a~~~~~~~--~~~~l~Vv~~~~~~~Gvl~~~di~ 112 (114)
T cd04801 62 VMTPAAK-LVTVLSEESLAEVLKLLEEQ--GLDELAVVEDSGQVIGLITEADLL 112 (114)
T ss_pred hhccccc-ceEECCCCcHHHHHHHHHHC--CCCeeEEEcCCCcEEEEEecccee
Confidence 4322234 67899999999999999986 458899999999999999988874
No 7
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.27 E-value=7.3e-06 Score=65.71 Aligned_cols=108 Identities=18% Similarity=0.262 Sum_probs=82.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS 174 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s 174 (379)
+..++|++++-+|++.|. ++.+.++|+++. .+- +=.+|..|+.+++.... ......++.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---------------~G~v~~~dl~~~~~~~~---~~~~~~~v~~ 64 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDA---------------YGIVTMRDILKKVVAEG---RDPDRVNVYE 64 (114)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcE---------------EEEEehHHHHHHHHhCC---CCCCccCHHH
Confidence 467899999999999998 578888776543 221 12899999999886631 1223345555
Q ss_pred cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+ .+++ +..++.+++..+|++.|.+. +...+||||. |+++|=|+..+|-
T Consensus 65 ~--~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vvd~-~~~~Gvi~~~dl~ 112 (114)
T cd04630 65 I--MTKP-LISVSPDMDIKYCARLMERT--NIRRAPVVEN-NELIGIISLTDIF 112 (114)
T ss_pred H--hcCC-CeeECCCCCHHHHHHHHHHc--CCCEeeEeeC-CEEEEEEEHHHhh
Confidence 5 3566 89999999999999999875 4478999987 9999999988764
No 8
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.25 E-value=6.3e-06 Score=66.31 Aligned_cols=91 Identities=15% Similarity=0.230 Sum_probs=74.6
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceE-EeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYC-WLTQEDLIRYFLNFIGLLNPTPNQPINS 174 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC-~LTQeDVvRFLl~~ig~l~p~p~~SI~s 174 (379)
+..++|++++-||.+.|. ++.+.++|+++.- .+|+ ++|..|+++.+.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~---------------~~~~Givt~~Dl~~~~~---------------- 51 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRK---------------QQFVGMLTITDFILILR---------------- 51 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCCC---------------CEEEEEEEHHHHhhhee----------------
Confidence 578999999999999998 5677888776421 1233 999999988543
Q ss_pred cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccC
Q 041297 175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLN 228 (379)
Q Consensus 175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~ 228 (379)
+..+.+++++.+|++.|.+. +...+||||.+ |+++|=|+-.|+-
T Consensus 52 --------~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~~~~~~giit~~d~~ 96 (98)
T cd04618 52 --------LVSIHPERSLFDAALLLLKN--KIHRLPVIDPSTGTGLYILTSRRIL 96 (98)
T ss_pred --------eEEeCCCCcHHHHHHHHHHC--CCCEeeEEECCCCCceEEeehhhhh
Confidence 67899999999999999885 56899999997 9999999988763
No 9
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.25 E-value=7e-06 Score=66.05 Aligned_cols=106 Identities=21% Similarity=0.217 Sum_probs=80.1
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
...+++++++-+|++.|. ++.++++|+++..+ -+-++|..|+.+...+ .....++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~---------------~~G~v~~~dl~~~~~~------~~~~~~v~~~ 61 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDEENK---------------VLGQVTLSDLLEIGPN------DYETLKVCEV 61 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCC---------------EEEEEEHHHHHhhccc------cccccChhhe
Confidence 356899999999999998 67888888764221 1238999999884221 1123446665
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
...+ +..+..++++.+|++.|.+. +...+||||.+|+++|-|+-.++-
T Consensus 62 --~~~~-~~~v~~~~~l~~al~~m~~~--~~~~lpVvd~~~~~~Giit~~di~ 109 (111)
T cd04603 62 --YIVP-VPIVYCDSKVTDLLRIFRET--EPPVVAVVDKEGKLVGTIYERELL 109 (111)
T ss_pred --eecC-CcEECCCCcHHHHHHHHHHc--CCCeEEEEcCCCeEEEEEEhHHhh
Confidence 3556 78899999999999999885 447899999999999999988763
No 10
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.23 E-value=1e-05 Score=63.99 Aligned_cols=104 Identities=21% Similarity=0.303 Sum_probs=80.5
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS 174 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s 174 (379)
+..+++++++.|+++.|. +++.+++|++++ +.. ++|+.|+++++.+... ..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G-----------------~v~~~~l~~~~~~~~~------~~~v~~ 59 (110)
T cd04588 3 LITLNPNATLREAARLFNTHHIHGAPVVDDGKLVG-----------------IVTLSDIAHAIARGLE------LAKVKD 59 (110)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEE-----------------EEEHHHHHHHHhcccc------ccCHHH
Confidence 456899999999999988 588888887651 122 8999999998754321 133444
Q ss_pred cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+.+.+ +..|..+++..++++.|.+. +...++|++.+|+++|-|+..+|-
T Consensus 60 --~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~G~i~~~dl~ 108 (110)
T cd04588 60 --VMTKD-VITIDEDEQLYDAIRLMNKH--NVGRLIVTDDEGRPVGIITRTDIL 108 (110)
T ss_pred --HhcCC-ceEECCCCCHHHHHHHHHhc--CCCEEEEECCCCCEEEEEEhHHhh
Confidence 24566 89999999999999999764 447899999999999999988774
No 11
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.22 E-value=4.8e-06 Score=67.52 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=79.9
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+++..+|+++|.+. ....+||++.+|+++|-++-.+|...-.. +++ +. +...+.
T Consensus 3 ~~~i~~~~~l~~a~~~~~~~--~~~~~pVv~~~~~~~Giv~~~dl~~~~~~----------~~~----~~--~~~~~~-- 62 (120)
T cd04641 3 IATARPDTPLIDVLDMLVER--RVSALPIVDENGKVVDVYSRFDVINLAKE----------GAY----NN--LDLTVG-- 62 (120)
T ss_pred cEEEcCCCCHHHHHHHHHHc--CCCeeeEECCCCeEEEEEeHHHHHHHHhc----------Ccc----cc--ccCCHH--
Confidence 78899999999999999876 45899999999999999987776541000 000 00 000000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
+.+ . .+........+|.+..+|.++|.++..+
T Consensus 63 --------------~~~----------------------------~------~~~~~~~~~~~v~~~~~l~~~~~~m~~~ 94 (120)
T cd04641 63 --------------EAL----------------------------E------RRSQDFEGVRTCSPDDCLRTIFDLIVKA 94 (120)
T ss_pred --------------HHH----------------------------h------hcccCCCCCeEEcCCCcHHHHHHHHHhc
Confidence 000 0 0000113457999999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+++++=|+|++|.++|+|+.+
T Consensus 95 ~~~~l~Vvd~~~~~~Givt~~ 115 (120)
T cd04641 95 RVHRLVVVDENKRVEGIISLS 115 (120)
T ss_pred CccEEEEECCCCCEEEEEEHH
Confidence 999999999999999999854
No 12
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.20 E-value=8.3e-06 Score=64.56 Aligned_cols=107 Identities=24% Similarity=0.354 Sum_probs=82.6
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
...++|++++-|+++.|. .|..++.|+++..+- +=|+|+.|+.+++.... ...++.++
T Consensus 3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~---------------~G~v~~~~l~~~~~~~~------~~~~v~~~ 61 (111)
T cd04639 3 FETLSPADTLDDAADALLATTQHEFPVVDGDGHL---------------VGLLTRDDLIRALAEGG------PDAPVRGV 61 (111)
T ss_pred ceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcE---------------EEEeeHHHHHHHHHhcC------CCCcHHHH
Confidence 457899999999999998 578888887642111 12999999999887532 22345543
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
...+ +..++.+++..+|+++|.+. +...+||++.+|+++|-++..||..
T Consensus 62 --~~~~-~~~i~~~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 62 --MRRD-FPTVSPSATLDAVLRLMQQG--GAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred --hcCC-CcEECCCCcHHHHHHHHHhc--CCceeeEEcCCCCEEEEEEHHHhhc
Confidence 4566 88999999999999999875 3478999999899999999988753
No 13
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.20 E-value=1.1e-05 Score=65.38 Aligned_cols=111 Identities=19% Similarity=0.201 Sum_probs=80.2
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc-
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS- 174 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s- 174 (379)
+..++|++++-||++.|. .|.++++|+++..+- .=++|..|+++++....-. ....++.+
T Consensus 3 ~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~---------------~Giv~~~dl~~~~~~~~~~---~~~~~~~~~ 64 (120)
T cd04641 3 IATARPDTPLIDVLDMLVERRVSALPIVDENGKV---------------VDVYSRFDVINLAKEGAYN---NLDLTVGEA 64 (120)
T ss_pred cEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeE---------------EEEEeHHHHHHHHhcCccc---cccCCHHHH
Confidence 467899999999999998 688888887642111 1189999999987543210 11112221
Q ss_pred ---cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 175 ---HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 175 ---LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
...-..+ +..+..++++.++++.|.+. +...+||||.+|+++|=||-.++-
T Consensus 65 ~~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~~~~~Givt~~di~ 118 (120)
T cd04641 65 LERRSQDFEG-VRTCSPDDCLRTIFDLIVKA--RVHRLVVVDENKRVEGIISLSDIL 118 (120)
T ss_pred HhhcccCCCC-CeEEcCCCcHHHHHHHHHhc--CccEEEEECCCCCEEEEEEHHHhh
Confidence 1111244 78999999999999999875 558999999999999999988763
No 14
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.20 E-value=1.3e-05 Score=63.94 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=81.4
Q ss_pred EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297 98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN 176 (379)
Q Consensus 98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG 176 (379)
..+++++++-+|++.|. .+.+.++|+++..+- .=++|+.|+.+.+..... +..++.++
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~---------------~G~v~~~dl~~~~~~~~~-----~~~~v~~~- 63 (113)
T cd04607 5 LLVSPDASILDALRKIDKNALRIVLVVDENGRL---------------LGTVTDGDIRRALLKGLS-----LDDPVSEV- 63 (113)
T ss_pred eEECCCCCHHHHHHHHHhcCcCEEEEECCCCCE---------------EEEEEcHHHHHHHhcCCC-----cCCCHHHh-
Confidence 45899999999999998 477777777643211 118999999987765422 12344433
Q ss_pred cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
.++. +..|+.++++.+|++.|... +...+|||+.+|+++|-||..++-+
T Consensus 64 -~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 64 -MNRN-PITAKVGSSREEILALMRER--SIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred -hcCC-CEEEcCCCCHHHHHHHHHHC--CCCEEEEECCCCCEEEEEEhHHhcc
Confidence 5666 88999999999999999875 4578999999999999999888743
No 15
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.19 E-value=4.8e-06 Score=66.21 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=80.0
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+.+..+|++.|.+.. ...+||+|. |+++|-|+..+|..+..... ... ++.+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~--~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~--------------~~~--~~~~~--- 60 (122)
T cd04585 3 PITVTPDTSLMEALKLMKENS--IRRLPVVDR-GKLVGIVTDRDLKLASPSKA--------------TTL--DIWEL--- 60 (122)
T ss_pred CEEeCCCCcHHHHHHHHHhCC--cceeeEecC-CeEEEEEeHHHHHHhhhccc--------------ccc--cchhh---
Confidence 678999999999999997753 368999998 99999999998876421100 000 00000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
.. .+.. . . ...--+...+++.+..+|..++..+..+
T Consensus 61 ----------~~---~~~~------~-----------------~--------~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 96 (122)
T cd04585 61 ----------YY---LLSK------I-----------------K--------VSDIMTRDPITVSPDASVEEAAELMLER 96 (122)
T ss_pred ----------hh---hhcc------c-----------------C--------HHHhccCCCeEeCCCCcHHHHHHHHHHc
Confidence 00 0000 0 0 0000123478999999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++.|+|++|.++|+|+..
T Consensus 97 ~~~~~~Vv~~~~~~~Gvvt~~ 117 (122)
T cd04585 97 KISGLPVVDDQGRLVGIITES 117 (122)
T ss_pred CCCceeEECCCCcEEEEEEHH
Confidence 999999999999999999864
No 16
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.19 E-value=1.7e-05 Score=64.34 Aligned_cols=108 Identities=15% Similarity=0.229 Sum_probs=82.5
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|++++-+|++.|. +|...++|++..-+- .=++|+.|+.+++.+.. .....++.+
T Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~---------------~Givt~~dl~~~~~~~~----~~~~~~~~~- 62 (118)
T cd04617 3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDL---------------VGVVSRKDLLKASIGGA----DLQKVPVGV- 62 (118)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCE---------------EEEEEHHHHHHHHHcCC----CccCCCHHH-
Confidence 467899999999999997 788888887642211 11899999999886432 123444554
Q ss_pred cccc--CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC---CcEEeeeCccccC
Q 041297 176 NIID--DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE---GRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~--~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d---GkLIGeISa~~L~ 228 (379)
+.. ++ +..+..+++..+|+++|.+. +...+||||.+ |+++|=|+-.+|-
T Consensus 63 -~~~~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~lpVvd~~~~~~~l~Gvit~~~l~ 116 (118)
T cd04617 63 -IMTRMPN-ITTTTPEESVLEAAKKLIEH--QVDSLPVVEKVDEGLEVIGRITKTNIT 116 (118)
T ss_pred -HhCCCCC-cEEECCCCcHHHHHHHHHHc--CCCEeeEEeCCCccceEEEEEEhhhee
Confidence 333 35 88999999999999999885 44889999987 7999999988764
No 17
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.16 E-value=6.8e-06 Score=65.36 Aligned_cols=110 Identities=16% Similarity=0.210 Sum_probs=80.6
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcc-cCCCCCCcccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGL-LNPTPNQPINS 174 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~-l~p~p~~SI~s 174 (379)
+.++++++++-++++.|. ++.+.++|++...+- .=++|+.|+++++.+.... +..+...++.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~---------------~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~ 67 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKY---------------VGTISLTDILWKLKGLENLDLERLVDLKVID 67 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeECCCCcE---------------EEEEeHHHHHHHhhccCchhHHHHhCCcHHH
Confidence 567999999999999998 688888887642111 1299999999988653210 00011344554
Q ss_pred cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+ .+++ +..+..+++..+|+++|.+. ..+||++.+|+++|-|+..+|-
T Consensus 68 ~--~~~~-~~~v~~~~~l~~a~~~~~~~----~~~~Vv~~~~~~~Gvit~~dil 114 (116)
T cd04643 68 V--MNTD-VPVIIDDADIEEILHLLIDQ----PFLPVVDDDGIFIGIITRREIL 114 (116)
T ss_pred H--hcCC-CceecCCCCHHHHHHHHhcC----CceeEEeCCCeEEEEEEHHHhh
Confidence 3 4556 88899999999999999652 3599999999999999988763
No 18
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.12 E-value=2.3e-05 Score=60.10 Aligned_cols=108 Identities=22% Similarity=0.300 Sum_probs=80.7
Q ss_pred eEEeCCCCchhHHHHHHhc-CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLLG-GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~~-G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+++++++.++++.|.+ +.++++|++... .-.-++++.|+++++.......... +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------~~~G~v~~~~l~~~~~~~~~~~~~~----~~-- 61 (113)
T cd02205 3 VVTVSPDDTVAEALRLMLEHGISGLPVVDDDG---------------RLVGIVTERDLLRALAEGGLDPLVT----VG-- 61 (113)
T ss_pred ceEecCCCCHHHHHHHHHhcCCceEEEECCCC---------------CEEEEEeHHHHHHHHHhccCCcccc----HH--
Confidence 4568999999999999985 677777766431 1122899999999997643321111 11
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+...+ ...+..+++..+++..|.+. +...++|++.+|+++|-|+..+|.
T Consensus 62 ~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~G~i~~~dl~ 111 (113)
T cd02205 62 DVMTRD-VVTVSPDTSLEEAAELMLEH--GIRRLPVVDDEGRLVGIVTRSDIL 111 (113)
T ss_pred HHhcCC-ceecCCCcCHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEEHHHhh
Confidence 123456 88899999999999999875 447899999999999999988764
No 19
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.12 E-value=1.8e-05 Score=62.58 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=80.0
Q ss_pred eEEeCCCCchhHHHHHHhc-CccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297 97 VRHLKPSASLLEAVDLLLG-GVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS 174 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~~-G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s 174 (379)
+..+.+++++-+|++.|.+ +...++|+++. .+ -+=++|+.|+++++.+... + .++..
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~---------------~~G~v~~~~l~~~~~~~~~---~---~~~~~ 61 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYDGDLDN---------------IIGVVHVKDLLRALAEGEE---D---LDLRD 61 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEECCCCce---------------EEEEEEHHHHHHHHHcCCC---c---CCHHH
Confidence 5679999999999999984 67777776543 11 1229999999998864321 1 23443
Q ss_pred cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+ ..+ +..+..+++..+|++.|.+. +...+||++.+|+++|-|+-.++.
T Consensus 62 ~---~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvit~~di~ 109 (111)
T cd04590 62 L---LRP-PLFVPESTPLDDLLEEMRKE--RSHMAIVVDEYGGTAGLVTLEDIL 109 (111)
T ss_pred H---hcC-CeecCCCCcHHHHHHHHHhc--CCcEEEEEECCCCEEEEeEHHHhh
Confidence 2 345 78899999999999999886 458899999999999999988764
No 20
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.10 E-value=1.8e-05 Score=63.69 Aligned_cols=112 Identities=25% Similarity=0.347 Sum_probs=83.1
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccC-----CCCCC
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLN-----PTPNQ 170 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~-----p~p~~ 170 (379)
+..+.|++++.|+++.|. +|+++++|+++..+ -+=++|..|+.+++........ .....
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~---------------~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04803 3 VVTLSEDDSLADAEELMREHRIRHLPVVNEDGK---------------LVGLLTQRDLLRAALSSLSDNGEESLTKERDV 67 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCcccccEECCCCC---------------EEEEEEHHHHHHHhccccccccccccccccCc
Confidence 456899999999999998 68888888765311 1228999999998865332111 11233
Q ss_pred cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
++.+ +.+.+ +..++.+++..++++.|++. +...+||++.+|+++|=|+..+|-
T Consensus 68 ~v~~--~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvit~~dl~ 120 (122)
T cd04803 68 PVAE--VMKTD-VLTVTPDTPLREAAEIMVEN--KIGCLPVVDDKGTLVGIITRSDFL 120 (122)
T ss_pred CHHH--hhCCC-CeEeCCCCcHHHHHHHHHHc--CCCeEEEEcCCCCEEEEEEHHHhh
Confidence 4443 35667 89999999999999999875 336799999999999999988764
No 21
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.10 E-value=2.4e-05 Score=62.08 Aligned_cols=107 Identities=16% Similarity=0.270 Sum_probs=80.3
Q ss_pred EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297 98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN 176 (379)
Q Consensus 98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG 176 (379)
..+.|++++-||++.|. .+..+++|+++.-+- .=++|+.|+.+.+... +. +...++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~---------------~G~v~~~dl~~~~~~~-~~---~~~~~i~~~- 63 (113)
T cd04615 4 SCVVLNTDIARAVAEMYTSGSRALPVVDDKKRL---------------VGIITRYDVLSYALES-EE---LKDAKVREV- 63 (113)
T ss_pred EEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCE---------------EEEEEHHHHHHhhhhh-hh---hcCCcHHHh-
Confidence 56799999999999998 577777777642111 1199999999976552 11 223445543
Q ss_pred cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
..++ +..++.+++..++++.|.+. +...+|||+.+|+++|-++..+|-
T Consensus 64 -~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vvd~~g~~~Gvvt~~dl~ 111 (113)
T cd04615 64 -MNSP-VITIDANDSIAKARWLMSNN--NISRLPVLDDKGKVGGIVTEDDIL 111 (113)
T ss_pred -ccCC-ceEECCCCcHHHHHHHHHHc--CCCeeeEECCCCeEEEEEEHHHhh
Confidence 4566 89999999999999999764 447899999999999999988763
No 22
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.07 E-value=2.2e-05 Score=64.31 Aligned_cols=119 Identities=21% Similarity=0.291 Sum_probs=80.9
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.++++.+|+..|.+. +..+++|+|.+|+++|-++..||..-... -.......-.+++ .
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~--~~~~i~V~d~~~~~~Giv~~~dl~~~~~~-~~~~~~~~~~~~~---~----------- 65 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKN--NISGLPVVDEKGKLIGNISASDLKGLLLS-PDDLLLYRTITFK---E----------- 65 (126)
T ss_pred eEEECCCccHHHHHHHHHHh--CCCcccEECCCCcEEEEEEHHHhhhhhcC-cchhhcccchhhh---h-----------
Confidence 78899999999999999764 45899999999999999998887551100 0000000000000 0
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
.. ++. .+........+++|.+..+|.+++..+..+
T Consensus 66 ---------------~~------------------~~~------------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~ 100 (126)
T cd04642 66 ---------------LS------------------EKF------------TDSDGVKSRPLITCTPSSTLKEVITKLVAN 100 (126)
T ss_pred ---------------hh------------------hhc------------ccccccccCCCeEECCCCcHHHHHHHHHHh
Confidence 00 000 000001234478999999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.++++|+|++|.++|+|+..
T Consensus 101 ~~~~l~Vvd~~~~~~Giit~~ 121 (126)
T cd04642 101 KVHRVWVVDEEGKPIGVITLT 121 (126)
T ss_pred CCcEEEEECCCCCEEEEEEHH
Confidence 999999999999999999853
No 23
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.05 E-value=4e-05 Score=61.17 Aligned_cols=105 Identities=17% Similarity=0.341 Sum_probs=77.0
Q ss_pred EEeCCCCchhHHHHHHh-cCcc-EEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297 98 RHLKPSASLLEAVDLLL-GGVQ-NLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS 174 (379)
Q Consensus 98 ~~V~P~tsLLdAie~m~-~G~~-rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s 174 (379)
..+.++.++-||++.|. +|.+ .++|.+.+ ... ++|..|+++++.+.. +....++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G-----------------~v~~~dl~~~~~~~~----~~~~~~i~~ 62 (115)
T cd04620 4 LTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLG-----------------IFTERDIVRLTAIGK----DLSDLPIGE 62 (115)
T ss_pred eEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEE-----------------EEeHHHHHHHHhcCC----CccccCHHH
Confidence 35789999999999997 5634 44445531 122 899999999876422 122355665
Q ss_pred cccccCCcEEEEecC--CchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 175 HNIIDDAGILAIHYD--DPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 175 LG~I~~~~v~aV~~~--~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+ ..++ +..+..+ +++.+|++.|.+. +...+|||+.+|+++|-|+..++-
T Consensus 63 ~--~~~~-~~~v~~~~~~~l~~a~~~~~~~--~~~~~pVvd~~~~~~Gvit~~dl~ 113 (115)
T cd04620 63 V--MTQP-VVTLQESEIQDIFTALSLFRQH--QIRHLPVLDDQGQLIGLVTAESIR 113 (115)
T ss_pred h--cCCC-cEEEecccccCHHHHHHHHHHh--CCceEEEEcCCCCEEEEEEhHHhh
Confidence 3 4566 7888877 6888999999885 447899999999999999988763
No 24
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.05 E-value=3.5e-05 Score=60.88 Aligned_cols=104 Identities=18% Similarity=0.306 Sum_probs=79.8
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|+.++-++++.|. +|.++++|+++..+- .=++|+.|+++.+.... ..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~---------------~G~v~~~~l~~~~~~~~--------~~~~~~ 60 (110)
T cd04605 4 VVTISEDASIKEAAKLMIEENINHLPVVDEDGRL---------------VGIVTSWDISKAVARDK--------KSVEDI 60 (110)
T ss_pred CEEECCCCCHHHHHHHHHhCCCceEEEECCCCcE---------------EEEEeHHHHHHHHhhCc--------cCHHHh
Confidence 467899999999999998 588898887542111 11899999998775432 123332
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
..++ +..+..+++..+|++.|.+. +...+|||+.+|+++|-++..+|.
T Consensus 61 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~~~~~~G~v~~~di~ 108 (110)
T cd04605 61 --MTRN-VITATPDEPIDVAARKMERH--NISALPVVDAENRVIGIITSEDIS 108 (110)
T ss_pred --cCCC-CeEECCCCcHHHHHHHHHHh--CCCEEeEECCCCcEEEEEEHHHhh
Confidence 3456 88999999999999999874 347899999999999999988764
No 25
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.05 E-value=2.2e-05 Score=64.86 Aligned_cols=111 Identities=21% Similarity=0.331 Sum_probs=80.5
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCC--------
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPT-------- 167 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~-------- 167 (379)
+..+.|++++.||++.|. +++++++|+++.-+ -+=++|+.|+++++..........
T Consensus 3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~---------------~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 67 (132)
T cd04636 3 VITVKKDDTLRDVVEILLTGKISGVPVVDNEGR---------------VVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFL 67 (132)
T ss_pred CeEeCCCCcHHHHHHHHHHhCCCccceECCCCC---------------EEEEEeHHHHHHHHhccCCccccccccccccc
Confidence 356899999999999997 67788888764211 112899999999987643322111
Q ss_pred --------CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 168 --------PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 168 --------p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
...++.++ .+++ +..|..+++..++++.|.+. ....+||++. |+++|-|+..++-
T Consensus 68 ~~~~~~~~~~~~v~~~--~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~V~~~-~~~iGvit~~dl~ 130 (132)
T cd04636 68 DESKIKKLLGKKVEEI--MTKK-VITVDEDTTIEDVARIMSKK--NIKRLPVVDD-GKLVGIISRGDII 130 (132)
T ss_pred chHHHHHHcCCCHHHh--ccCC-ceEECCCCcHHHHHHHHHHC--CCCeeEEEEC-CEEEEEEEHHHhh
Confidence 01133333 3566 89999999999999999765 3368999998 9999999988763
No 26
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.05 E-value=2.8e-05 Score=62.71 Aligned_cols=112 Identities=27% Similarity=0.335 Sum_probs=81.6
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcc-cC-----CCCC
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGL-LN-----PTPN 169 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~-l~-----p~p~ 169 (379)
+..++|++++-|+++.|. ++..+++|+++..+ -.=++|+.|+++++...... +. ....
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~---------------~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~ 68 (124)
T cd04600 4 VVTVTPDTSLEEAWALLRRHRIKALPVVDGDRR---------------LVGIVTQRDLLRHARPDGRRPLRGRLRGRDKP 68 (124)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCceeeEECCCCC---------------EEEEEEHHHHHhhhcccccchhhhhhhccccc
Confidence 467899999999999998 57788888754211 12289999999877532210 00 0112
Q ss_pred CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.++.++ .+++ +..+..+++..+|++.|.+. +...+||||.+|+++|-|+..|+-
T Consensus 69 ~~i~~~--~~~~-~~~~~~~~~l~~~~~~~~~~--~~~~~~Vv~~~g~~~Gvit~~di~ 122 (124)
T cd04600 69 ETVGDI--MSPP-VVTVRPDTPIAELVPLLADG--GHHHVPVVDEDRRLVGIVTQTDLI 122 (124)
T ss_pred ccHHHh--ccCC-CeeeCCCCcHHHHHHHHHhc--CCCceeEEcCCCCEEEEEEhHHhh
Confidence 234433 3566 89999999999999999875 457899999999999999988873
No 27
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.04 E-value=2.6e-05 Score=61.10 Aligned_cols=107 Identities=20% Similarity=0.312 Sum_probs=80.2
Q ss_pred CceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297 95 GIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN 173 (379)
Q Consensus 95 gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~ 173 (379)
|.+..+++++++-||++.|. ++.++++|+++ .+- .=++|+.|+.|++.+.-..+ ..++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~---------------~G~v~~~dl~~~~~~~~~~~----~~~~~ 60 (110)
T cd04609 1 GDVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRV---------------VGSIDESDLLDALIEGKAKF----SLPVR 60 (110)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCceeeEeeC-Cee---------------EEEEeHHHHHHHHhcccccc----CcCHH
Confidence 34567899999999999999 58888888765 111 11899999999886542211 23344
Q ss_pred ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
++ .+++ +..++.+++..+++++|++ . ..++||+.+|+++|-|+..++-
T Consensus 61 ~~--~~~~-~~~v~~~~~l~~~~~~~~~--~--~~~~vv~~~~~~~Gvvt~~di~ 108 (110)
T cd04609 61 EV--MGEP-LPTVDPDAPIEELSELLDR--G--NVAVVVDEGGKFVGIITRADLL 108 (110)
T ss_pred HH--hcCC-CceeCCCCcHHHHHHHHHh--C--CceeEEecCCeEEEEEeHHHhh
Confidence 32 4566 8899999999999999987 2 3478999999999999988763
No 28
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.04 E-value=1.3e-05 Score=66.47 Aligned_cols=111 Identities=23% Similarity=0.301 Sum_probs=80.8
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-------------
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG------------- 162 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig------------- 162 (379)
+..++|++++-|+++.|. .+.++++|+++.-+- .=++|+.|+++++.....
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~---------------~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~ 68 (135)
T cd04586 4 VVTVSPETSVAEAARLMLDNHISGLPVVDDDGRL---------------VGIVSEGDLLRRAELGTERRRARWLDLLAGA 68 (135)
T ss_pred CEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCE---------------EEEeeHHHHHHHhcccCcchhhhHHHHhcch
Confidence 567899999999999998 578888887653211 118999999887643210
Q ss_pred -----ccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 163 -----LLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 163 -----~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+......++.++ .+++ +..|..+++..+|++.|.+. +...+||+| +|+++|-|+..++-
T Consensus 69 ~~~~~~~~~~~~~~v~~~--~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~l~Vvd-~g~~~Gvit~~di~ 133 (135)
T cd04586 69 EELAAAFVRSHGRKVADV--MTRP-VVTVGEDTPLAEVAELMEEH--RIKRVPVVR-GGRLVGIVSRADLL 133 (135)
T ss_pred HHHHHHHHHhcCCCHHHH--hCCC-ceEeCCCCcHHHHHHHHHHc--CCCccCEec-CCEEEEEEEhHhhh
Confidence 0001123344443 3566 89999999999999999885 447899999 99999999988763
No 29
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.02 E-value=3.8e-05 Score=60.94 Aligned_cols=106 Identities=15% Similarity=0.210 Sum_probs=81.5
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+.++.++-++++.|. +|.++++|+++..+- .=++|+.|+.++...... ...++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~---------------~G~v~~~dl~~~~~~~~~-----~~~~v~~~ 62 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNTNEIIVKDNEEKL---------------KGVVTFTDILDLDLFESF-----LEKKVFNI 62 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCE---------------EEEEehHHhHHHHhhccc-----ccCcHHHH
Confidence 467899999999999998 688888886542111 119999999988764321 23456654
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+++ +..+..+++..+|++.|.+. +...+||++. |+++|-|+..++-
T Consensus 63 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~-~~~~G~it~~di~ 109 (111)
T cd04626 63 --VSQD-VFYVNEEDTIDEALDIMREK--QIGRLPVVDD-NKLIGVVRTKDIL 109 (111)
T ss_pred --hcCC-cEEEcCCCcHHHHHHHHHHc--CCCeeeEeEC-CEEEEEEEhHHhc
Confidence 5677 88999999999999999875 3367999988 9999999988874
No 30
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.02 E-value=2.3e-05 Score=63.24 Aligned_cols=112 Identities=23% Similarity=0.416 Sum_probs=82.0
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccC--------CC
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLN--------PT 167 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~--------p~ 167 (379)
+..+.|+.++-||++.|. .+.+.++|++..-++ -+=++|+.|+.+++.+... +. ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~--------------~~G~v~~~dl~~~~~~~~~-~~~~~~~~~~~~ 67 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGK--------------LVGIITATDILKYLGGGEK-FNKIKTGNGLEA 67 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCE--------------EEEEEEHHHHHHHhhccch-hccccccccchh
Confidence 457899999999999998 577777777643111 1228999999998865321 11 11
Q ss_pred CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 168 PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 168 p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+..++.++ .+++ +..+..+++..++++.|++. ....++|++.+|+++|-|+..++-
T Consensus 68 ~~~~~~~~--~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~V~~~~~~~~Gvit~~di~ 123 (125)
T cd04631 68 INEPVRSI--MTRN-VITITPDDSIKDAAELMLEK--RVGGLPVVDDDGKLVGIVTERDLL 123 (125)
T ss_pred hhcCHHHH--hcCC-ceEeCCCCcHHHHHHHHHHc--CCceEEEEcCCCcEEEEEEHHHhh
Confidence 23345544 3566 99999999999999999875 346799999999999999988763
No 31
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.01 E-value=5.5e-05 Score=59.52 Aligned_cols=106 Identities=20% Similarity=0.300 Sum_probs=81.4
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|+.++-++++.|. ++.+.++|++. ++ -+=++|..|+.+++..... ...++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~--------------~~G~v~~~~l~~~~~~~~~-----~~~~v~~~ 61 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRERRISSIVVVDD--GR--------------PLGIVTERDILRLLASGPD-----LQTPVGEV 61 (111)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CE--------------EEEEEeHHHHHHHHhcCCC-----CCcCHHHh
Confidence 457899999999999998 47778777654 21 1128999999999865331 34455554
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+++ +..++.+++..++++.|.+. +...++|++.+|+++|-|+..+|-
T Consensus 62 --~~~~-~~~~~~~~~l~~~l~~~~~~--~~~~~~Vv~~~~~~~Gvi~~~di~ 109 (111)
T cd04611 62 --MSSP-LLTVPADTSLYDARQLMREH--GIRHLVVVDDDGELLGLLSQTDLL 109 (111)
T ss_pred --cCCC-ceEECCCCCHHHHHHHHHHc--CCeEEEEECCCCcEEEEEEhHHhh
Confidence 3566 88999999999999999764 446799999999999999988874
No 32
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.01 E-value=4.9e-05 Score=60.16 Aligned_cols=108 Identities=21% Similarity=0.315 Sum_probs=80.8
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+.|++++-++++.|. +|.++++|++. .+- .=++|..|+++++... .+.+. ..++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~---------------~G~v~~~dl~~~~~~~--~~~~~-~~~v~~i 63 (113)
T cd04587 3 PATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKL---------------VGIFTSKDIALRVVAQ--GLDPE-STLVERV 63 (113)
T ss_pred CeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEE---------------EEEEEhHHHHHHHHhc--CCCcC-cCCHHHh
Confidence 456899999999999997 58888888764 211 1189999999877652 11221 2456654
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.++. +..+..+++..+|++.|... +...++||+.+|+++|-||..+|-
T Consensus 64 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~l~Vv~~~~~~~Gvvs~~dl~ 111 (113)
T cd04587 64 --MTPN-PVCATSDTPVLEALHLMVQG--KFRHLPVVDKSGQVVGLLDVTKLT 111 (113)
T ss_pred --cCCC-CeEEcCCCCHHHHHHHHHHc--CCCcccEECCCCCEEEEEEHHHhc
Confidence 3566 78899999999999999764 336799999999999999988874
No 33
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.01 E-value=5.4e-05 Score=59.53 Aligned_cols=107 Identities=21% Similarity=0.357 Sum_probs=80.1
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|++++.++++.|. .+.++++|+++.-+ -+=++|..|+++++...-. +....++.++
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~---------------~~Giv~~~~l~~~~~~~~~---~~~~~~~~~~ 64 (113)
T cd04623 3 VITVRPDATVAEAAKLMAEKNIGAVVVVDDGGR---------------LVGIFSERDIVRKVALRGA---SALDTPVSEI 64 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEECCCCC---------------EEEEEehHHHHHHHhhcCC---CccccCHHHh
Confidence 356899999999999998 57889888754211 1128999999998764321 1123455553
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
.+++ +..+..+++..++++.|.+. +...+||++. |+++|-|+..+|
T Consensus 65 --~~~~-~~~v~~~~~~~~~l~~~~~~--~~~~~~Vv~~-~~~~Gvit~~di 110 (113)
T cd04623 65 --MTRN-VITVTPDDTVDEAMALMTER--RFRHLPVVDG-GKLVGIVSIGDV 110 (113)
T ss_pred --cCCC-cEEECCCCcHHHHHHHHHHc--CCCEeEEEeC-CEEEEEEEHHHh
Confidence 3456 88999999999999999875 3367899987 999999998876
No 34
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.99 E-value=2.8e-05 Score=62.53 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=78.8
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
...++.+++..+|++.|.+. ....++|+|.+|+++|-|+..+|...... +..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~--~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-----------------~~~--------- 54 (111)
T cd04603 3 TVSVNCENPLREAIKMINEL--GARAVVVVDEENKVLGQVTLSDLLEIGPN-----------------DYE--------- 54 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHc--CCCEEEEEcCCCCEEEEEEHHHHHhhccc-----------------ccc---------
Confidence 67889999999999999764 44789999999999999998887641100 000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. .+ . ++. -.....++.+..++.+++..|..|
T Consensus 55 -----------------------~-~~------v-~~~------------------~~~~~~~v~~~~~l~~al~~m~~~ 85 (111)
T cd04603 55 -----------------------T-LK------V-CEV------------------YIVPVPIVYCDSKVTDLLRIFRET 85 (111)
T ss_pred -----------------------c-cC------h-hhe------------------eecCCcEECCCCcHHHHHHHHHHc
Confidence 0 00 0 000 113357899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|.+|.+.|+|+.+
T Consensus 86 ~~~~lpVvd~~~~~~Giit~~ 106 (111)
T cd04603 86 EPPVVAVVDKEGKLVGTIYER 106 (111)
T ss_pred CCCeEEEEcCCCeEEEEEEhH
Confidence 999999999999999999854
No 35
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.98 E-value=6.2e-05 Score=60.24 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=79.9
Q ss_pred EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297 98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN 176 (379)
Q Consensus 98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG 176 (379)
..++|++++-++++.|. .++++++|+++.-+- .=++|..|+.+.+.+.. ..+..++.++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~---------------~G~v~~~dl~~~~~~~~----~~~~~~~~~~- 63 (115)
T cd04593 4 PVLSATTPLREAAEQLIESKHGSALVVDRDGGV---------------VGIITLPDLLRALEADE----AGEPSAVDEV- 63 (115)
T ss_pred cEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCE---------------EEEEEHHHHHHHHhccc----ccccccHHHh-
Confidence 46889999999999998 578888887642111 11899999999876521 1122234443
Q ss_pred cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC--CcEEeeeCcccc
Q 041297 177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE--GRLVGDISPFSL 227 (379)
Q Consensus 177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d--GkLIGeISa~~L 227 (379)
...+ +..+..+++..+|+++|.+. +...+||||.+ |+++|=|+..++
T Consensus 64 -~~~~-~~~v~~~~~l~~~l~~~~~~--~~~~~~Vvd~~~~~~~~Gvit~~di 112 (115)
T cd04593 64 -ATPP-LLTVHPDEPLAHALDRMASR--GLRQLPVVDRGNPGQVLGLLTRENV 112 (115)
T ss_pred -ccCC-ceEECCCCCHHHHHHHHHHc--CCceeeEEeCCCCCeEEEEEEhHHh
Confidence 4556 88999999999999999875 44789999987 899999998876
No 36
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.98 E-value=4.8e-05 Score=60.10 Aligned_cols=108 Identities=24% Similarity=0.280 Sum_probs=81.4
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+.|++++-++++.|. .+.++++|+++..+- .=++|+.|+.+++.+... ....++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~---------------~G~v~~~~i~~~~~~~~~----~~~~~v~~~ 64 (114)
T cd04604 4 LPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRL---------------VGIFTDGDLRRALEKGLD----ILTLPVADV 64 (114)
T ss_pred ccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCE---------------EEEechHHHHHHHhccCc----cccCCHHHh
Confidence 456899999999999998 467788887653221 118999999998875432 112344443
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+++ +..+..+++..++++.|.+. +...+|||+.+|+++|-|+..+|-
T Consensus 65 --~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~iG~it~~di~ 112 (114)
T cd04604 65 --MTRN-PKTIDPDALAAEALELMEEN--KITALPVVDDNGRPVGVLHIHDLL 112 (114)
T ss_pred --hccC-CeEECCCCcHHHHHHHHHHc--CCCEEEEECCCCCEEEEEEHHHhh
Confidence 4566 78899999999999999774 447899999999999999988763
No 37
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.98 E-value=7.2e-05 Score=59.27 Aligned_cols=104 Identities=26% Similarity=0.374 Sum_probs=81.0
Q ss_pred EEeCCCCchhHHHHHHh-cCccEEEEecCC--cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297 98 RHLKPSASLLEAVDLLL-GGVQNLVILPAG--IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS 174 (379)
Q Consensus 98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~--~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s 174 (379)
..++|+.++-++++.|. .+.++++|+++. +.. ++|+.|+++++.+... +..++.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G-----------------~v~~~~l~~~~~~~~~-----~~~~v~~ 61 (112)
T cd04624 4 VTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIG-----------------IVTERDIVRAVAAGID-----LDTPVSE 61 (112)
T ss_pred eEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEE-----------------EeeHHHHHHHHhccCC-----CccCHHH
Confidence 46899999999999998 588888887643 122 8999999998876321 2345554
Q ss_pred cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+.+++ +..+..+++..++++.|.+. ....++||+.+|+++|-++..+|-
T Consensus 62 --~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~Vv~~~g~~~Gilt~~dl~ 110 (112)
T cd04624 62 --IMTRD-LVTVDPDEPVAEAAKLMRKN--NIRHHLVVDKGGELVGVISIRDLV 110 (112)
T ss_pred --hccCC-CEEECCCCcHHHHHHHHHHc--CccEEEEEcCCCcEEEEEEHHHhc
Confidence 34667 89999999999999999764 336899999999999999988763
No 38
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.96 E-value=5.1e-05 Score=59.67 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=80.1
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|++++-++++.|. .+..+++|+++ .+ -+=++|..|+.+...+.. ... .++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~--------------~~G~v~~~dl~~~~~~~~--~~~---~~~~~~ 61 (111)
T cd04612 3 VVTVPVDLTVDEVLALMFGERHRGYPVVDD--GR--------------LVGIVTLADIRRVPAEGR--EAT---VLVGDV 61 (111)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcceEeeC--Ce--------------EEEEEEHHHHHHHHhcCc--ccc---cCHHHh
Confidence 356899999999999998 56777777665 22 122899999998765321 111 223322
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSC 230 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~C 230 (379)
..++ +..+..+++..++++.|.+. +...++|++.+|+++|-|+..++-.|
T Consensus 62 --~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~G~it~~di~~~ 111 (111)
T cd04612 62 --MTRD-PVTASPDETLRDALKRMAER--DIGRLPVVDDSGRLVGIVSRSDLLRA 111 (111)
T ss_pred --ccCC-CeEECCCCCHHHHHHHHHhC--CCCeeeEEcCCCCEEEEEEHHHhhhC
Confidence 3456 89999999999999999875 44789999999999999999887654
No 39
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.95 E-value=7.1e-05 Score=58.73 Aligned_cols=100 Identities=19% Similarity=0.298 Sum_probs=75.1
Q ss_pred EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297 98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN 176 (379)
Q Consensus 98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG 176 (379)
..++|+.++-||++.|. ++.+.++|+++.-+- .=++|..|+.+... .++.++
T Consensus 4 ~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~---------------~Giv~~~dl~~~~~-----------~~~~~~- 56 (106)
T cd04582 4 ITVRPDDPLSDALGLMDDSDLRALTVVDADGQP---------------LGFVTRREAARASG-----------GCCGDH- 56 (106)
T ss_pred cEecCCCcHHHHHHHHHhcCCCEEEEECCCCCE---------------EEEEeHHHHHHhcc-----------cchhhh-
Confidence 46889999999999987 567777777532111 12899999987421 124433
Q ss_pred cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.++. +..+..+++..+|++.|.+. +...+|||+.+|+++|-|+..+|-
T Consensus 57 -~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvi~~~~l~ 104 (106)
T cd04582 57 -AEPF-KVTVSVDDDLRIVLSRMFAH--DMSWLPCVDEDGRYVGEVTQRSIA 104 (106)
T ss_pred -cccC-CEEECCCCCHHHHHHHHHHC--CCCeeeEECCCCcEEEEEEHHHhh
Confidence 3555 77799999999999999885 447799999999999999988763
No 40
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.94 E-value=3.4e-05 Score=61.15 Aligned_cols=109 Identities=22% Similarity=0.307 Sum_probs=80.1
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|+.++-||++.|. ++...++|+++..+- .=++|+.|+++.+.+... ...+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~---------------~G~v~~~~l~~~~~~~~~--~~~~~~~v~~~ 65 (114)
T cd04629 3 PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNL---------------VGFLSEQDCLKQLLESSY--HCDGVATVRDI 65 (114)
T ss_pred CeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeE---------------EEEeehHHHHHHhhhhhh--ccCCCccHHHH
Confidence 456899999999999987 577777777542211 128999999998865321 11223344443
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+++ +..+..+++..+|++.|.+. +...+||++. |+++|-|+..+|-
T Consensus 66 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~-~~~~Gvit~~di~ 112 (114)
T cd04629 66 --MTTE-VLTVSPDDSIVDLAQLMLKA--KPKRYPVVDD-GKLVGQISRRDVL 112 (114)
T ss_pred --hccC-ceEECCCCcHHHHHHHHHHh--CCCccCEEEC-CEEEEEEEHHHHh
Confidence 4566 88999999999999999875 3467999997 9999999988763
No 41
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.94 E-value=6.5e-05 Score=58.98 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=76.2
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+++..++++.|.+. ....++|+|.+|+++|-++..+|..... -+.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~V~d~~~~~~G~v~~~~l~~~~~------~~~~v~~~---------------- 59 (110)
T cd04601 4 PITVSPDATVAEALELMAEY--GISGLPVVDDDGKLVGIVTNRDLRFETD------LDKPVSEV---------------- 59 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHc--CCceEEEEcCCCEEEEEEEhhHeeeccc------CCCCHHHh----------------
Confidence 67889999999999999765 3479999999999999999888753100 00000000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecC-CCcHHHHHHHHHH
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYP-WSSLMAVIMQALA 341 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p-~SSLvAVMaQAla 341 (379)
-...+.++.+ ..+|.++|..+..
T Consensus 60 --------------------------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~ 83 (110)
T cd04601 60 --------------------------------------------------------MTPENLLTTVEGTSLEEALELLHE 83 (110)
T ss_pred --------------------------------------------------------cccCceEEecCCCCHHHHHHHHHH
Confidence 0122455666 9999999999999
Q ss_pred cCCcEEEEeeCCCCcccceEee
Q 041297 342 RRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 342 HRV~~vWVvd~e~~l~~~v~~~ 363 (379)
++.+++.|+|++|.++|+|+..
T Consensus 84 ~~~~~~~Vv~~~~~~~Gvi~~~ 105 (110)
T cd04601 84 HKIEKLPVVDDEGKLKGLITVK 105 (110)
T ss_pred hCCCeeeEEcCCCCEEEEEEhh
Confidence 9999999999999999999864
No 42
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.93 E-value=5.6e-05 Score=61.78 Aligned_cols=109 Identities=14% Similarity=0.274 Sum_probs=80.3
Q ss_pred EEeCCCCchhHHHHHHh-cCccEEEEecCC--cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc---------ccC
Q 041297 98 RHLKPSASLLEAVDLLL-GGVQNLVILPAG--IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG---------LLN 165 (379)
Q Consensus 98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~--~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig---------~l~ 165 (379)
..+.|++++-||++.|. .+++.++|+++. +.. ++|+.|+.+++..... ...
T Consensus 4 ~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G-----------------~it~~dl~~~~~~~~~~~~~~~~~~~~~ 66 (128)
T cd04632 4 ITVREDDSVGKAINVLREHGISRLPVVDDNGKLTG-----------------IVTRHDIVDFVVRDRDKARTGDRSGEKE 66 (128)
T ss_pred eEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEE-----------------EEEHHHHHHHHhhhhhhcchhhhhhhhh
Confidence 46889999999999998 588888887653 222 8999999998754210 011
Q ss_pred CCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEc--CCCcEEeeeCccccC
Q 041297 166 PTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVD--EEGRLVGDISPFSLN 228 (379)
Q Consensus 166 p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd--~dGkLIGeISa~~L~ 228 (379)
..+..++.+ +.+++ +..+..+++..++++.|.+.- ...++|++ .+|+++|-|+..+|-
T Consensus 67 ~~~~~~~~~--~~~~~-~~~v~~~~~l~~~l~~~~~~~--~~~~~V~~~~~~~~~~Gvit~~di~ 126 (128)
T cd04632 67 RMLDLPVYD--AMSSP-VITASPNDSVRDAVDRMLEND--DSSVVVVTPDDDTKVVGILTKKDVL 126 (128)
T ss_pred hhccCcHHH--HhcCC-CceECCCCcHHHHHHHHHhCC--CCeEeEeccCCCCcEEEEEEhHhhh
Confidence 122344554 35677 999999999999999998753 36788885 468999999998874
No 43
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.92 E-value=9.7e-05 Score=58.59 Aligned_cols=107 Identities=20% Similarity=0.208 Sum_probs=80.0
Q ss_pred EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297 98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN 176 (379)
Q Consensus 98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG 176 (379)
..+.++.++-||++.|. +|.+.++|+++ -+- .=++|.+|+.+++..... .+..++.++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~---------------~G~v~~~~l~~~~~~~~~----~~~~~i~~~- 62 (111)
T cd04589 4 LIVDASTSIRDAARLMREHGADALLVRDG-DPR---------------LGIVTRTDLLDAVLLDGL----PSSTPVGEI- 62 (111)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEecC-CeE---------------EEEEEHHHHHHHHHcCCC----CCCCCHHHH-
Confidence 46789999999999998 57777777665 111 118999999998754211 124456654
Q ss_pred cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCC
Q 041297 177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSC 230 (379)
Q Consensus 177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~C 230 (379)
.+++ +..|..+++..+++++|.+. ....+||++. |+++|-|+..++-.|
T Consensus 63 -~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~-~~~~G~it~~dl~~~ 111 (111)
T cd04589 63 -ATFP-LITVDPDDFLFNALLLMTRH--RIHRVVVREG-GEVVGVLEQTDLLSF 111 (111)
T ss_pred -hCCC-cEEECCCCcHHHHHHHHHHh--CccEEEEeeC-CEEEEEEEhHHhhcC
Confidence 4566 89999999999999999885 3367999985 899999999887654
No 44
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.91 E-value=7.1e-05 Score=59.47 Aligned_cols=111 Identities=23% Similarity=0.280 Sum_probs=79.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCC------CCC
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNP------TPN 169 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p------~p~ 169 (379)
+..++++.++-++++.|. .+.+.+.|+++ .+ -.=++++.|+.+++..-.....+ .-.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~--------------~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (122)
T cd04585 3 PITVTPDTSLMEALKLMKENSIRRLPVVDR--GK--------------LVGIVTDRDLKLASPSKATTLDIWELYYLLSK 66 (122)
T ss_pred CEEeCCCCcHHHHHHHHHhCCcceeeEecC--Ce--------------EEEEEeHHHHHHhhhcccccccchhhhhhhcc
Confidence 356899999999999998 57788888765 22 00178899998876432111111 011
Q ss_pred CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.++.+ +.+++ +..++.+++..+++..|.+. +...+||++.+|+++|-||..+|.
T Consensus 67 ~~~~~--~~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvvt~~di~ 120 (122)
T cd04585 67 IKVSD--IMTRD-PITVSPDASVEEAAELMLER--KISGLPVVDDQGRLVGIITESDLF 120 (122)
T ss_pred cCHHH--hccCC-CeEeCCCCcHHHHHHHHHHc--CCCceeEECCCCcEEEEEEHHHhh
Confidence 22332 23556 89999999999999999875 457899999999999999988774
No 45
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.91 E-value=4.6e-05 Score=60.50 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=78.0
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|++++-+|++.|. .|.+.++|+++.-+- .=|+|+.|+.++. +..++.++
T Consensus 4 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~---------------~G~v~~~~l~~~~----------~~~~v~~~ 58 (108)
T cd04596 4 TGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKV---------------VGIVTSKDVAGKD----------PDTTIEKV 58 (108)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeE---------------EEEecHHHHhccc----------ccccHHHH
Confidence 467899999999999998 466777777542111 1199999997531 24456654
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+.+ +..+..+++..+|++.|.+. +...+|||+.+|+++|-|+..++.
T Consensus 59 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~~~~~~G~it~~di~ 106 (108)
T cd04596 59 --MTKN-PITVNPKTSVASVAHMMIWE--GIEMLPVVDDNKKLLGIISRQDVL 106 (108)
T ss_pred --hcCC-CeEECCCCCHHHHHHHHHHc--CCCeeeEEcCCCCEEEEEEHHHhh
Confidence 4566 88999999999999999875 448899999999999999987763
No 46
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.89 E-value=8e-05 Score=59.29 Aligned_cols=89 Identities=12% Similarity=0.222 Sum_probs=76.2
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..|+.+++..+|++.|.+. ....++|+|++|+++|-++..+|....
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~--~~~~~~V~d~~~~~~Giv~~~dl~~~~------------------------------- 49 (96)
T cd04614 3 VPTVWEETPLPVAVRIMELA--NVKALPVLDDDGKLSGIITERDLIAKS------------------------------- 49 (96)
T ss_pred ccEeCCCCcHHHHHHHHHHc--CCCeEEEECCCCCEEEEEEHHHHhcCC-------------------------------
Confidence 78899999999999999764 457899999999999999877765400
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
...+|.+..+|.++|..+..|
T Consensus 50 -----------------------------------------------------------~~~~v~~~~~l~~a~~~m~~~ 70 (96)
T cd04614 50 -----------------------------------------------------------EVVTATKRTTVSECAQKMKRN 70 (96)
T ss_pred -----------------------------------------------------------CcEEecCCCCHHHHHHHHHHh
Confidence 046888999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|++|.++|+|+.+
T Consensus 71 ~~~~lpVv~~~~~~~Giit~~ 91 (96)
T cd04614 71 RIEQIPIINGNDKLIGLLRDH 91 (96)
T ss_pred CCCeeeEECCCCcEEEEEEHH
Confidence 999999999999999999753
No 47
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.87 E-value=0.00012 Score=58.08 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=78.1
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|++++-++++.|. ++.+.++|.++ .+- .=++|..|+.+++.+... ..+..++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~---------------~G~v~~~dl~~~~~~~~~---~~~~~~v~~~ 63 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVMER-GEL---------------VGLLTFREVLQAMAQHGA---GVLDTTVRAI 63 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEE---------------EEEEEHHHHHHHHHhcCC---chhcCCHHHH
Confidence 467899999999999997 46555555432 111 118999999998865311 1223456654
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+.+ +..++.+++..+|++.|.+. +...+||++ +|+++|=++..+|-
T Consensus 64 --~~~~-~~~v~~~~~l~~a~~~m~~~--~~~~l~Vv~-~~~~~Gvvt~~dl~ 110 (112)
T cd04625 64 --MNPE-PIVASPDDSIDEVRRLMVER--HLRYLPVLD-GGTLLGVISFHDVA 110 (112)
T ss_pred --hCCC-CeEECCCCCHHHHHHHHHHc--CCCeeeEEE-CCEEEEEEEHHHhh
Confidence 4666 88899999999999999875 347799998 69999999988774
No 48
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.87 E-value=0.00014 Score=58.58 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=79.2
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..+..++++.+|++.|.+. ....++|+|.+|+++|-++..+|.... +.. + ..+.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~--~~~~~~Vvd~~g~~~G~vt~~dl~~~~-------~~~---~---~~~~---------- 57 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEP--GIDLVVVCDPHGKLAGVLTKTDVVRQM-------GRC---G---GPGC---------- 57 (114)
T ss_pred eEEECCCCcHHHHHHHHHhc--CCCEEEEECCCCCEEEEEehHHHHHHH-------hhc---C---CCcc----------
Confidence 67788999999999999775 457899999999999999888774310 000 0 0000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. . .. ++. -...+++|.+..+|.+++..+..+
T Consensus 58 -----------------------~-~------~v-~~~------------------~~~~~~~v~~~~~l~~a~~~m~~~ 88 (114)
T cd04619 58 -----------------------T-A------PV-ENV------------------MTRAVVSCRPGDLLHDVWQVMKQR 88 (114)
T ss_pred -----------------------c-C------CH-HHH------------------hcCCCeeECCCCCHHHHHHHHHHc
Confidence 0 0 00 000 123578999999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
..+++=|+|++|.++|+|+..
T Consensus 89 ~~~~lpVvd~~~~~~Gvi~~~ 109 (114)
T cd04619 89 GLKNIPVVDENARPLGVLNAR 109 (114)
T ss_pred CCCeEEEECCCCcEEEEEEhH
Confidence 999999999999999999853
No 49
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.86 E-value=7.7e-05 Score=63.05 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=80.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc-----------
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL----------- 164 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l----------- 164 (379)
+.++.+++++-+|++.|. +|...++|+++..+- .=++|+.|+++++.......
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~---------------~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~ 67 (135)
T cd04621 3 IATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKP---------------VGVITYRDLAFAEFEDNERGLPKKSIKMKRK 67 (135)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCE---------------EEEEeHHHHHHHhhcccccccchhhhhhhhh
Confidence 356899999999999998 577888887653211 11899999999885321110
Q ss_pred -CC-------CCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 165 -NP-------TPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 165 -~p-------~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
++ ....++.++ ..++ +..|..+++..+|++.|.+. +...+||++. |+++|-|+..+|-
T Consensus 68 ~~~~~~~~~~~~~~~v~~~--~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~l~Vv~~-~~~~Gvit~~di~ 133 (135)
T cd04621 68 AGQKRYRYVKEVPLVAEDI--MTEE-IITVSPNDDVVDAAKLMLEA--NISGLPVVDN-DNIVGVITKTDIC 133 (135)
T ss_pred cccccccccccccccHHHh--cCCC-CeEECCCCCHHHHHHHHHHc--CCCEEEEEeC-CEEEEEEEHHHHh
Confidence 00 113355555 3556 88999999999999999775 4467999987 9999999988763
No 50
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.84 E-value=7.1e-05 Score=60.10 Aligned_cols=110 Identities=18% Similarity=0.306 Sum_probs=80.8
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-cc-----CCCCC
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-LL-----NPTPN 169 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-~l-----~p~p~ 169 (379)
+.+++|++++-|+.+.|. ++.++++|+++ .+ -.=++|+.|+.+++..-.. .+ .+...
T Consensus 3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~--------------~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (121)
T cd04633 3 VITVSPDDRVSHARRLMLDHDISRLPVIEG--GK--------------LVGIVTEKDIADALRSFRPLVRDRHQERRIRN 66 (121)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CE--------------EEEEEchHHHHHhhhhhhhcccchhhhhhhhc
Confidence 457899999999999987 58888888764 11 1228999999998764211 11 12223
Q ss_pred CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.++.++ .+.+ ...++.+++..+|++.|.+. +...+||++. |+++|-|+..+|.
T Consensus 67 ~~~~~~--~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~-~~~~Gvi~~~dl~ 119 (121)
T cd04633 67 LPVSDI--MTRP-VITIEPDTSVSDVASLMLEN--NIGGLPVVDD-GKLVGIVTRTDIL 119 (121)
T ss_pred cCHHHH--ccCC-ceEECCCCcHHHHHHHHHHc--CCCcccEEEC-CEEEEEEEHHHhh
Confidence 344432 3456 88999999999999999775 3478999998 9999999998874
No 51
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.83 E-value=0.00017 Score=56.46 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=78.2
Q ss_pred EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297 98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN 176 (379)
Q Consensus 98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG 176 (379)
..++|+.++-++++.|. .|.++++|+++..+- .=++|+.|+.+.+... .++.+
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~---------------~G~v~~~dl~~~~~~~---------~~v~~-- 58 (109)
T cd04583 5 VTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKL---------------LGIVSLESLEQAYKEA---------KSLED-- 58 (109)
T ss_pred EEECCCCCHHHHHHHHHHCCCceEEEEcCCCcE---------------EEEEEHHHHHHHhhcC---------CcHhH--
Confidence 45899999999999998 488888887653111 1289999998875321 23333
Q ss_pred cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+..++ +..+..+++..+|+..|... +...+|||+.+|+++|-|+..+|-
T Consensus 59 ~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~vv~~~g~~~Gvit~~~l~ 107 (109)
T cd04583 59 IMLED-VFTVQPDASLRDVLGLVLKR--GPKYVPVVDEDGKLVGLITRSSLV 107 (109)
T ss_pred hhcCC-ceEECCCCcHHHHHHHHHHc--CCceeeEECCCCeEEEEEehHHhh
Confidence 24566 88999999999999999774 557899999999999999988763
No 52
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.83 E-value=5.7e-05 Score=59.77 Aligned_cols=106 Identities=10% Similarity=0.071 Sum_probs=77.2
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.++++.+|++.|.+. ....++|++. |+++|-++..+|..+.. ....+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~v~~~-~~~~G~i~~~~l~~~~~--------------~~~~~~---------- 55 (113)
T cd04622 3 VVTVSPDDTIREAARLMREH--DVGALPVCEN-DRLVGIVTDRDIVVRAV--------------AEGRDP---------- 55 (113)
T ss_pred CEEECCCCcHHHHHHHHHHc--CCCEEEEeeC-CEEEEEEEhHHHHHHHh--------------hccCCc----------
Confidence 77899999999999999764 3478999998 99999999887742100 000000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
... .. .+. -.....++.+..++..++..+..+
T Consensus 56 -----------------------~~~------~~-~~~------------------~~~~~~~v~~~~~~~~~~~~~~~~ 87 (113)
T cd04622 56 -----------------------DTT------TV-GDV------------------MTRGVVTVTEDDDVDEAARLMREH 87 (113)
T ss_pred -----------------------ccC------CH-HHh------------------ccCCccEECCCCCHHHHHHHHHHc
Confidence 000 00 000 112367889999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++.|+|++|.+.|+|..+
T Consensus 88 ~~~~~~V~~~~~~~~G~it~~ 108 (113)
T cd04622 88 QVRRLPVVDDDGRLVGIVSLG 108 (113)
T ss_pred CCCeeeEECCCCcEEEEEEHH
Confidence 999999999999999999865
No 53
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.83 E-value=0.00014 Score=58.44 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=81.2
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+++..+|++.|.+. +...++|+|.+|+++|-++..+|..+.- +.. +.+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~V~d~~~~~~G~v~~~~l~~~~~-----------------~~~--~~~~~~~- 60 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLES--GFTGLPVVQKAGELIGIITRRDIIRAGS-----------------VRT--SVEDQQR- 60 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHc--CCCcccEECCCCcEEEEEEcHHHHhhcc-----------------ccc--cccchhh-
Confidence 78899999999999999764 4579999999999999999988865310 000 0000000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
.. ... . . .- .+ --...++++.+..+|.+++..+..+
T Consensus 61 ----~~---------~~~-----~-~------~~-~~------------------~~~~~~~~v~~~~~l~~~~~~~~~~ 96 (122)
T cd04635 61 ----TQ---------TKA-----S-P------TV-EK------------------IMSTPVYSVTPDDSIATAVELMLEH 96 (122)
T ss_pred ----hh---------hhc-----c-C------cH-HH------------------HhcCCCeeECCCCCHHHHHHHHHHc
Confidence 00 000 0 0 00 00 0123468999999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|++|.+.|+++.+
T Consensus 97 ~~~~~~Vvd~~g~~~Gvit~~ 117 (122)
T cd04635 97 DIGRLPVVNEKDQLVGIVDRH 117 (122)
T ss_pred CCCeeeEEcCCCcEEEEEEhH
Confidence 999999999999999999853
No 54
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.80 E-value=7e-05 Score=58.91 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=76.6
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+++..+|++.|.+. ....++|++. |+++|-++..+|..+... + .+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~~-~~~~G~v~~~~l~~~~~~-----------~----~~~---------- 54 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRER--RISSIVVVDD-GRPLGIVTERDILRLLAS-----------G----PDL---------- 54 (111)
T ss_pred ceEECCCCcHHHHHHHHHHc--CCCEEEEeeC-CEEEEEEeHHHHHHHHhc-----------C----CCC----------
Confidence 77899999999999999764 3467899987 999999987776542100 0 000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
... . .+ --....+++++..+|.+++..+..+
T Consensus 55 -----------------------~~~-------v-~~------------------~~~~~~~~~~~~~~l~~~l~~~~~~ 85 (111)
T cd04611 55 -----------------------QTP-------V-GE------------------VMSSPLLTVPADTSLYDARQLMREH 85 (111)
T ss_pred -----------------------CcC-------H-HH------------------hcCCCceEECCCCCHHHHHHHHHHc
Confidence 000 0 00 0112468899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++.|+|++|.+.|+|+..
T Consensus 86 ~~~~~~Vv~~~~~~~Gvi~~~ 106 (111)
T cd04611 86 GIRHLVVVDDDGELLGLLSQT 106 (111)
T ss_pred CCeEEEEECCCCcEEEEEEhH
Confidence 999999999999999999853
No 55
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.79 E-value=0.00016 Score=57.13 Aligned_cols=106 Identities=25% Similarity=0.340 Sum_probs=80.0
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++++.++-|+++.|. ++.++++|+++ .+ -.=++|..|+.+++... + + ....++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~--------------~~G~v~~~~l~~~~~~~-~-~--~~~~~i~~~ 62 (111)
T cd04800 3 PVTCSPDTTIREAARLMTEHRVSSLLVVDD--GR--------------LVGIVTDRDLRNRVVAE-G-L--DPDTPVSEV 62 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CE--------------EEEEEEhHHHHHHHhcc-C-C--CccCCHHHH
Confidence 356899999999999998 57888888765 21 01189999999987652 1 1 112345543
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+.+ +..+..+++..++++.|.+. +...+||++. |+++|-|+..|+.
T Consensus 63 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~-~~~~Giit~~di~ 109 (111)
T cd04800 63 --MTAP-PITIPPDATVFEALLLMLER--GIHHLPVVDD-GRLVGVISATDLL 109 (111)
T ss_pred --hCCC-CeEECCCCcHHHHHHHHHHc--CCCeeeEeEC-CEEEEEEEHHHhh
Confidence 3566 88999999999999999885 3478999987 9999999988874
No 56
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.79 E-value=9.6e-05 Score=58.83 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=72.4
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|++++.||++.|. +|+..++|++...+- .=.+|..|+.+.+
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~---------------~Giv~~~dl~~~~------------------ 49 (96)
T cd04614 3 VPTVWEETPLPVAVRIMELANVKALPVLDDDGKL---------------SGIITERDLIAKS------------------ 49 (96)
T ss_pred ccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCE---------------EEEEEHHHHhcCC------------------
Confidence 356899999999999998 678888887642211 1178999998743
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
. +..+.++++..+|+++|.+. ....+||++.+|+++|=|+..++-
T Consensus 50 -----~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVv~~~~~~~Giit~~di~ 94 (96)
T cd04614 50 -----E-VVTATKRTTVSECAQKMKRN--RIEQIPIINGNDKLIGLLRDHDLL 94 (96)
T ss_pred -----C-cEEecCCCCHHHHHHHHHHh--CCCeeeEECCCCcEEEEEEHHHhh
Confidence 1 67889999999999999885 447899999999999999987763
No 57
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.78 E-value=0.00012 Score=58.96 Aligned_cols=110 Identities=20% Similarity=0.316 Sum_probs=80.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCC------CCC
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNP------TPN 169 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p------~p~ 169 (379)
+.++.|++++-+|++.|. .|+++++|++++ +- .=++|+.|+.+.+........+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~---------------~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (122)
T cd04637 3 VVTVEMDDRLEEVREIFEKHKFHHLLVVEDN-EL---------------VGVISDRDYLKAISPFLGTAGETEKDLATLN 66 (122)
T ss_pred ceEeCCCCCHHHHHHHHHhCCCCEEEEEeCC-eE---------------EEEEEHHHHHHHHHHHhccccchHHHHHHHH
Confidence 467899999999999998 588888887651 11 1189999999987643221110 011
Q ss_pred CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
.++.++ .+++ ++.+..+++..++++.|.+. +...++||+.+|+++|=++..++
T Consensus 67 ~~~~~~--~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~vv~~~~~~~Gvit~~dl 119 (122)
T cd04637 67 RRAHQI--MTRD-PITVSPDTPVDEASKLLLEN--SISCLPVVDENGQLIGIITWKDL 119 (122)
T ss_pred hHHHHh--hcCC-CeeeCCCCcHHHHHHHHHHc--CCCeEeEECCCCCEEEEEEHHHh
Confidence 233332 4566 89999999999999999774 44779999999999999987776
No 58
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.77 E-value=0.00027 Score=56.10 Aligned_cols=104 Identities=24% Similarity=0.359 Sum_probs=81.6
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS 174 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s 174 (379)
+..+.|.+++.+|++.|. .++..+.|++.. ... ++|..|+++++........ .
T Consensus 9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~G-----------------iit~~di~~~~~~~~~~~~--------~ 63 (117)
T COG0517 9 VITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVG-----------------IITERDILRALAAGGKRLL--------P 63 (117)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEE-----------------EEEHHHHHHHHhccCCccc--------c
Confidence 678999999999999999 577777776653 343 8999999999987544322 1
Q ss_pred cccccC-CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCC-cEEeeeCcccc
Q 041297 175 HNIIDD-AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEG-RLVGDISPFSL 227 (379)
Q Consensus 175 LG~I~~-~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dG-kLIGeISa~~L 227 (379)
.+.+-. + +..+..+.+..+|++.|.+. .+...+||++.++ +++|-+|..|+
T Consensus 64 v~~v~~~~-~~~~~~~~~~~~~~~~m~~~-~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 64 VKEVMTKP-VVTVDPDTPLEEALELMVER-HKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred HHHhccCC-cEEECCCCCHHHHHHHHHHH-cCcCeEEEEECCCCeEEEEEEHHHc
Confidence 222222 5 89999999999999999873 2458999999996 99999998876
No 59
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.73 E-value=0.00017 Score=57.13 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=74.6
Q ss_pred EeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccccc
Q 041297 99 HLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNI 177 (379)
Q Consensus 99 ~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~ 177 (379)
.+.|+.++-||++.|. +|..+++|++. -+- .=|+|..|+.+.. ..++.+ +
T Consensus 5 ~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~---------------~G~v~~~~l~~~~-----------~~~~~~--~ 55 (104)
T cd04594 5 KVKDYDKVYEAKRIMIENDLLSLPVVDY-NKF---------------LGAVYLKDIENAT-----------YGDVVD--Y 55 (104)
T ss_pred EECCCCCHHHHHHHHHHcCCcEEEEEEC-CEE---------------EEEEEHHHHhhhc-----------ccchhh--h
Confidence 5789999999999998 58888888764 211 1189999998642 123444 3
Q ss_pred ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
..+. ...|+.+++..+|++.|.+. +...+|||| +|+++|-|+..+|-
T Consensus 56 ~~~~-~~~v~~~~~l~~a~~~~~~~--~~~~~~Vv~-~~~~iGvit~~dl~ 102 (104)
T cd04594 56 IVRG-IPYVRLTSTAEEAWEVMMKN--KTRWCPVVD-DGKFKGIVTLDSIL 102 (104)
T ss_pred hhcC-CcEEcCCCCHHHHHHHHHHc--CcceEEEEE-CCEEEEEEEHHHhh
Confidence 4566 78999999999999999875 447799998 69999999988774
No 60
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.73 E-value=0.00023 Score=56.16 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=77.3
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++++++..+|++.|.+. ....++|+|.+|+++|-++..+|...- . +...+ +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~V~d~~~~~~G~v~~~~l~~~~-------~-----------~~~~~---~--- 57 (110)
T cd04605 4 VVTISEDASIKEAAKLMIEE--NINHLPVVDEDGRLVGIVTSWDISKAV-------A-----------RDKKS---V--- 57 (110)
T ss_pred CEEECCCCCHHHHHHHHHhC--CCceEEEECCCCcEEEEEeHHHHHHHH-------h-----------hCccC---H---
Confidence 77899999999999999763 336799999999999999887774200 0 00000 0
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
.+. -...+.+|.+..+|.+++..+..+
T Consensus 58 -----------------------------------~~~------------------~~~~~~~v~~~~~l~~~~~~~~~~ 84 (110)
T cd04605 58 -----------------------------------EDI------------------MTRNVITATPDEPIDVAARKMERH 84 (110)
T ss_pred -----------------------------------HHh------------------cCCCCeEECCCCcHHHHHHHHHHh
Confidence 000 012367889999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++.|+|++|.+.|+|+.+
T Consensus 85 ~~~~~~Vv~~~~~~~G~v~~~ 105 (110)
T cd04605 85 NISALPVVDAENRVIGIITSE 105 (110)
T ss_pred CCCEEeEECCCCcEEEEEEHH
Confidence 999999999999999999864
No 61
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.73 E-value=0.00024 Score=56.28 Aligned_cols=104 Identities=22% Similarity=0.370 Sum_probs=79.7
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++++.++-++++.|. ++..+++|+++ .+ -.=++|+.|+.+.+.... +..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~--------------~~G~v~~~dl~~~~~~~~------~~~~~~~~ 61 (110)
T cd04595 4 VKTVRPEATIEEARELLLRYGHTALPVVEG--GR--------------VVGIISRRDVEKALRHGL------GHAPVKDY 61 (110)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CE--------------EEEEEEHHHHHHHHhccc------ccCcHHHH
Confidence 457899999999999998 57778888775 21 011899999988663211 34455553
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+++ +..+..+++..+|++.|.+. +...+||++ +|+++|=++..++-
T Consensus 62 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~V~~-~~~~~Gvvt~~di~ 108 (110)
T cd04595 62 --MSTD-VVTVPPDTPLSEVQELMVEH--DIGRVPVVE-DGRLVGIVTRTDLL 108 (110)
T ss_pred --hcCC-CEEECCCCcHHHHHHHHHHc--CCCeeEEEe-CCEEEEEEEhHHhh
Confidence 3566 88999999999999999886 447899999 89999999887763
No 62
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.71 E-value=0.00029 Score=55.70 Aligned_cols=107 Identities=22% Similarity=0.316 Sum_probs=78.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHH-HHHHhhhcccCCCCCCcccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLI-RYFLNFIGLLNPTPNQPINS 174 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVv-RFLl~~ig~l~p~p~~SI~s 174 (379)
+..++|++++-||++.|. +|.+.+.|+++ .+ -.=++|+.|++ +.+..... + ...++.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~--------------~~G~i~~~~l~~~~~~~~~~---~-~~~~~~~ 62 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVCEN--DR--------------LVGIVTDRDIVVRAVAEGRD---P-DTTTVGD 62 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CE--------------EEEEEEhHHHHHHHhhccCC---c-ccCCHHH
Confidence 356899999999999998 57778877765 21 01189999987 44433211 1 1223554
Q ss_pred cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+ .+++ +..+..+++.-++++.|... +...++|++.+|+++|-++..++.
T Consensus 63 ~--~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~G~it~~di~ 111 (113)
T cd04622 63 V--MTRG-VVTVTEDDDVDEAARLMREH--QVRRLPVVDDDGRLVGIVSLGDLA 111 (113)
T ss_pred h--ccCC-ccEECCCCCHHHHHHHHHHc--CCCeeeEECCCCcEEEEEEHHHhh
Confidence 3 4566 88999999999999999775 447899999999999999988774
No 63
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.68 E-value=0.00014 Score=70.54 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=77.9
Q ss_pred CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHH
Q 041297 181 AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLV 260 (379)
Q Consensus 181 ~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~ 260 (379)
+ +..|+++++..+|++.|.+. ....++|+|++|+++|-++..||+.. +. ...+. +
T Consensus 213 ~-~~~v~~~~sl~~a~~~~~~~--~~~~~vVvd~~g~lvGivt~~Dl~~~-------~~--------~~~~~---~---- 267 (326)
T PRK10892 213 E-IPHVSKTASLRDALLEITRK--NLGMTVICDDNMKIEGIFTDGDLRRV-------FD--------MGIDL---R---- 267 (326)
T ss_pred C-CeEECCCCCHHHHHHHHHhc--CCCeEEEEcCCCcEEEEEecHHHHHH-------Hh--------cCCCc---c----
Confidence 6 99999999999999999764 34778888999999999998887530 00 00000 0
Q ss_pred HHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHH
Q 041297 261 RLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQAL 340 (379)
Q Consensus 261 ~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAl 340 (379)
. .+ . ++. -+..++++++..+|.+++..|.
T Consensus 268 -------------------------~-~~------v-~~i------------------m~~~~~~v~~~~~l~~a~~~m~ 296 (326)
T PRK10892 268 -------------------------Q-AS------I-ADV------------------MTPGGIRVRPGILAVDALNLMQ 296 (326)
T ss_pred -------------------------c-CC------H-HHh------------------cCCCCEEECCCCCHHHHHHHHH
Confidence 0 00 0 010 1134789999999999999999
Q ss_pred HcCCcEEEEeeCCCCcccceEee
Q 041297 341 ARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 341 aHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
.|+++++=|+| +|.++|+|+.+
T Consensus 297 ~~~~~~lpVv~-~~~lvGiit~~ 318 (326)
T PRK10892 297 SRHITSVLVAD-GDHLLGVLHMH 318 (326)
T ss_pred HCCCcEEEEee-CCEEEEEEEhH
Confidence 99999997776 68899999854
No 64
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.68 E-value=0.00025 Score=55.84 Aligned_cols=105 Identities=15% Similarity=0.199 Sum_probs=80.0
Q ss_pred EEeCCCCchhHHHHHHh-cCccEEEEecCC--cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297 98 RHLKPSASLLEAVDLLL-GGVQNLVILPAG--IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS 174 (379)
Q Consensus 98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~--~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s 174 (379)
..++|++++-++++.|. .+..+++|++.. +.. ++|.+|+.+++.+.- .....++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G-----------------~v~~~~l~~~~~~~~----~~~~~~v~~ 62 (114)
T cd04613 4 VTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVG-----------------IVSLDDIREILFDPS----LYDLVVASD 62 (114)
T ss_pred eeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEE-----------------EEEHHHHHHHHhccc----ccccEEHHH
Confidence 46899999999999998 477787777642 222 899999999875421 111234444
Q ss_pred cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC-CCcEEeeeCccccC
Q 041297 175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE-EGRLVGDISPFSLN 228 (379)
Q Consensus 175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~-dGkLIGeISa~~L~ 228 (379)
+.+++ +..|.++++..++++.|.+. ....++|++. +|+++|=++..+|.
T Consensus 63 --~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~~~Gvvt~~di~ 112 (114)
T cd04613 63 --IMTKP-PVVVYPEDSLEDALKKFEDS--DYEQLPVVDDDPGKLLGILSRSDLL 112 (114)
T ss_pred --hccCC-CcEEcCCCCHHHHHHHHhhC--CccEeeEEeCCCCEEEEEEEhHHhh
Confidence 35666 88999999999999999875 4478999998 89999999887764
No 65
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.68 E-value=0.00017 Score=58.01 Aligned_cols=111 Identities=18% Similarity=0.254 Sum_probs=78.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh--cc---cCCCCCC
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI--GL---LNPTPNQ 170 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i--g~---l~p~p~~ 170 (379)
+..+.|++++.++++.|. ++.++++|++...+ -.-++|+.|+++++.... .. +......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~---------------~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGE---------------LIGIITRRDIIRAGSVRTSVEDQQRTQTKASP 67 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcccEECCCCc---------------EEEEEEcHHHHhhccccccccchhhhhhhccC
Confidence 356899999999999998 57778877754211 122899999988642110 00 0001233
Q ss_pred cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
++.++ ..++ +..++.+++..++++.|.+. +...+|||+.+|+++|=++..+|
T Consensus 68 ~~~~~--~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vvd~~g~~~Gvit~~dl 119 (122)
T cd04635 68 TVEKI--MSTP-VYSVTPDDSIATAVELMLEH--DIGRLPVVNEKDQLVGIVDRHDV 119 (122)
T ss_pred cHHHH--hcCC-CeeECCCCCHHHHHHHHHHc--CCCeeeEEcCCCcEEEEEEhHHh
Confidence 34432 3556 89999999999999999875 44789999999999999988776
No 66
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.66 E-value=0.00024 Score=56.46 Aligned_cols=99 Identities=22% Similarity=0.352 Sum_probs=73.8
Q ss_pred eCCCCchhHHHHHHhc-C-----ccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297 100 LKPSASLLEAVDLLLG-G-----VQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN 173 (379)
Q Consensus 100 V~P~tsLLdAie~m~~-G-----~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~ 173 (379)
++|++++-|+++.|.+ + ...++|+++..+- .=++|.+|+++. + +..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~---------------~G~v~~~~l~~~---------~-~~~~v~ 56 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRL---------------LGVVSLRDLLLA---------D-PDTPVS 56 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCE---------------EEEEEHHHHhcC---------C-CcchHH
Confidence 6799999999999984 5 3456666542111 118999999761 1 234555
Q ss_pred ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
++ .+++ ...+..+++..++++.|... +...++||+.+|+++|-|+..+|-
T Consensus 57 ~~--~~~~-~~~i~~~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvit~~dll 106 (109)
T cd04606 57 DI--MDTD-VISVSADDDQEEVARLFEKY--DLLALPVVDEEGRLVGIITVDDVI 106 (109)
T ss_pred HH--hCCC-CeEEcCCCCHHHHHHHHHHc--CCceeeeECCCCcEEEEEEhHHhh
Confidence 53 4667 89999999999999999775 336799999999999999998874
No 67
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.66 E-value=0.00025 Score=56.76 Aligned_cols=110 Identities=22% Similarity=0.321 Sum_probs=79.4
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc-----CCCCCC
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL-----NPTPNQ 170 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l-----~p~p~~ 170 (379)
+..+++++++-+|++.|. .+..+++|++...+- .=++|+.|+.+++.+..+.. ......
T Consensus 3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~---------------~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 67 (121)
T cd04584 3 VVTITPTTTIAEALELMREHKIRHLPVVDEEGRL---------------VGIVTDRDLRDASPSPFTTLSEHELYLLLKM 67 (121)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCcccEECCCCcE---------------EEEEEHHHHHHHhhhhcccchhhhhhhhcCc
Confidence 467899999999999998 466677777653111 11899999998875432211 123344
Q ss_pred cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
++.++ .+++ +..++.+++..++++.|.+. ....+||++. |+++|-++..++
T Consensus 68 ~v~~~--~~~~-~~~i~~~~~l~~~~~~~~~~--~~~~~~V~~~-~~~~Gvv~~~di 118 (121)
T cd04584 68 PVKEI--MTKD-VITVHPLDTVEEAALLMREH--RIGCLPVVED-GRLVGIITETDL 118 (121)
T ss_pred CHHHH--hhCC-CeEECCCCcHHHHHHHHHHc--CCCeEEEeeC-CEEEEEEEHHHh
Confidence 55553 3556 88999999999999999775 3478999987 999999987765
No 68
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.65 E-value=0.00017 Score=58.45 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=78.0
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+++.-+|++.|.+. ....++|+|.+|+++|=++..+|.... .....++
T Consensus 3 ~~~~~~~~~~~~a~~~~~~~--~~~~~~V~d~~~~~~Givt~~dl~~~~------------------~~~~~~~------ 56 (118)
T cd04617 3 PVVVRENTSVYDAIVTLFLE--DVGSLFVVDEDGDLVGVVSRKDLLKAS------------------IGGADLQ------ 56 (118)
T ss_pred CEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCCEEEEEEHHHHHHHH------------------HcCCCcc------
Confidence 67889999999999999753 447999999999999999887765410 0000000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. . .. ++. +.+.....++.+..+|.++|..+..|
T Consensus 57 -----------------------~-~------~~-~~~----------------~~~~~~~~~v~~~~~l~~~~~~~~~~ 89 (118)
T cd04617 57 -----------------------K-V------PV-GVI----------------MTRMPNITTTTPEESVLEAAKKLIEH 89 (118)
T ss_pred -----------------------C-C------CH-HHH----------------hCCCCCcEEECCCCcHHHHHHHHHHc
Confidence 0 0 00 000 01112367999999999999999999
Q ss_pred CCcEEEEeeCC---CCcccceEee
Q 041297 343 RDRLRSMAKAE---NPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e---~~l~~~v~~~ 363 (379)
+++++=|+|++ |.++|+|+-.
T Consensus 90 ~~~~lpVvd~~~~~~~l~Gvit~~ 113 (118)
T cd04617 90 QVDSLPVVEKVDEGLEVIGRITKT 113 (118)
T ss_pred CCCEeeEEeCCCccceEEEEEEhh
Confidence 99999999998 6899999753
No 69
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.65 E-value=0.00024 Score=68.57 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=82.4
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+.|++++-||++.|. .+...++|++...+- .=++|..|+.+.+.... .+..++.+
T Consensus 209 ~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~---------------iG~vt~~dl~~~~~~~~-----~~~~~v~~- 267 (321)
T PRK11543 209 IPQVALTASVMDAMLELSRTGLGLVAVCDAQQQV---------------QGVFTDGDLRRWLVGGG-----ALTTPVNE- 267 (321)
T ss_pred CcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcE---------------EEEecHHHHHHHHhCCC-----CcCCcHHH-
Confidence 667999999999999998 466777777643221 11899999998775421 12344554
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+.+++ +..+..+++..+|++.|.+. +...+||||.+|+++|-|+..|+-
T Consensus 268 -im~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~~~lvGvIt~~di~ 316 (321)
T PRK11543 268 -AMTRG-GTTLQAQSRAIDAKEILMKR--KITAAPVVDENGKLTGAINLQDFY 316 (321)
T ss_pred -hcCCC-CEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHHH
Confidence 44666 88999999999999999886 558999999999999999988873
No 70
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.63 E-value=0.0006 Score=53.99 Aligned_cols=106 Identities=19% Similarity=0.370 Sum_probs=78.2
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+.|++++-|+++.|. ++.+.++|+++. +- +=++|+.|+.+++...- +. ....++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~---------------~G~v~~~dl~~~~~~~~--~~-~~~~~~~~~ 63 (112)
T cd04802 3 VITVDPDTTVYEAANIMTENNIGRLIVVDNE-KP---------------VGIITERDLVKKVVSRN--LK-PREVPVGEV 63 (112)
T ss_pred cEEECCCCCHHHHHHHHHHCCCCEEEEEECC-EE---------------EEEEEHHHHHHHHhhcc--CC-cccCCHHHh
Confidence 346899999999999998 467777776542 11 12999999999886531 00 123345443
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
.+++ +..++.+++..++++.|.+. +...+|||+.+ +++|=|+..++
T Consensus 64 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~~-~~~Gvi~~~di 109 (112)
T cd04802 64 --MSTP-LITIDPNASLNEAAKLMAKH--GIKRLPVVDDD-ELVGIVTTTDI 109 (112)
T ss_pred --cCCC-cEEECCCCCHHHHHHHHHHc--CCCeeEEeeCC-EEEEEEEhhhh
Confidence 4567 99999999999999999875 33679999876 99999998876
No 71
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.62 E-value=0.00019 Score=56.79 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=78.4
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVR 261 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~ 261 (379)
+..++.+++..+|++.|.+. ....++|++.+ |+++|-++..+|..+.. +.. ++
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~--~~~~~~v~~~~~~~~~G~v~~~~l~~~~~------------------~~~--~~---- 56 (111)
T cd04590 3 IVALDADDTLEEILELIAES--GHSRFPVYDGDLDNIIGVVHVKDLLRALA------------------EGE--ED---- 56 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhC--CCceEEEECCCCceEEEEEEHHHHHHHHH------------------cCC--Cc----
Confidence 88999999999999999764 34789999998 99999998888754110 000 00
Q ss_pred HHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHH
Q 041297 262 LVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALA 341 (379)
Q Consensus 262 ~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAla 341 (379)
. . . ++ + . ....++.+..+|.+++..+..
T Consensus 57 ------------------------~-~-------~-~~---------------~--~--~~~~~v~~~~~l~~~~~~~~~ 84 (111)
T cd04590 57 ------------------------L-D-------L-RD---------------L--L--RPPLFVPESTPLDDLLEEMRK 84 (111)
T ss_pred ------------------------C-C-------H-HH---------------H--h--cCCeecCCCCcHHHHHHHHHh
Confidence 0 0 0 00 0 0 125778999999999999999
Q ss_pred cCCcEEEEeeCCCCcccceEee
Q 041297 342 RRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 342 HRV~~vWVvd~e~~l~~~v~~~ 363 (379)
|+.+++=|+|++|.++|+|+..
T Consensus 85 ~~~~~~~Vv~~~~~~~Gvit~~ 106 (111)
T cd04590 85 ERSHMAIVVDEYGGTAGLVTLE 106 (111)
T ss_pred cCCcEEEEEECCCCEEEEeEHH
Confidence 9999999999999999999854
No 72
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.62 E-value=0.0004 Score=56.54 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=79.7
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVR 261 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~ 261 (379)
+..++.+++..+|++.|.+- ....++|+|.+ |+++|-++..||...-... ....+..++.
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~--~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~---~~~~~~~~~~-------------- 63 (123)
T cd04627 3 FIPVPSTASLFQAIEILGSG--GIHRVAVTEEESGEVIGILSQRRLVEFLWEN---ARSFPGLDPL-------------- 63 (123)
T ss_pred ceecCCCCCHHHHHHHHhhC--CcceEEEEeCCCCcEEEEEEHHHHHHHHHHh---HHhccchhhh--------------
Confidence 78899999999999999653 34789999997 9999999988765410000 0000000000
Q ss_pred HHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHH
Q 041297 262 LVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALA 341 (379)
Q Consensus 262 ~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAla 341 (379)
. . ... . ..........++.+..+|.+++..|..
T Consensus 64 --------------~-----~---~~~-----------------~--------~~~~~~~~~~~v~~~~~l~~a~~~m~~ 96 (123)
T cd04627 64 --------------Y-----P---IPL-----------------R--------DLTIGTSDVISINGDQPLIDALHLMHN 96 (123)
T ss_pred --------------h-----h---hhh-----------------h--------hcccCcCCceEeCCCCCHHHHHHHHHH
Confidence 0 0 000 0 000012346799999999999999999
Q ss_pred cCCcEEEEeeCCCCcccceEeeh
Q 041297 342 RRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 342 HRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
|+++++=|+|++|.++|+|+.+.
T Consensus 97 ~~~~~lpVvd~~~~~vGiit~~d 119 (123)
T cd04627 97 EGISSVAVVDNQGNLIGNISVTD 119 (123)
T ss_pred cCCceEEEECCCCcEEEEEeHHH
Confidence 99999999999999999998753
No 73
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.62 E-value=0.0002 Score=57.62 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=79.5
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..+..+++..+|+..|.+. ..+.++|++.+|+++|-++..+|..+... .+.....+ +
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~G~v~~~~l~~~~~~-----------~~~~~~~~------~--- 60 (122)
T cd04803 3 VVTLSEDDSLADAEELMREH--RIRHLPVVNEDGKLVGLLTQRDLLRAALS-----------SLSDNGEE------S--- 60 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHc--CcccccEECCCCCEEEEEEHHHHHHHhcc-----------cccccccc------c---
Confidence 67899999999999999875 33689999999999999998887542100 00000000 0
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
.. . . ... . ...--+...++|.+..++.+++..+..+
T Consensus 61 ----------------~~-----~-~-----~~~---------~--------v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (122)
T cd04803 61 ----------------LT-----K-E-----RDV---------P--------VAEVMKTDVLTVTPDTPLREAAEIMVEN 96 (122)
T ss_pred ----------------cc-----c-c-----cCc---------C--------HHHhhCCCCeEeCCCCcHHHHHHHHHHc
Confidence 00 0 0 000 0 0000123468999999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|++|.++|+++..
T Consensus 97 ~~~~~~Vv~~~~~~~Gvit~~ 117 (122)
T cd04803 97 KIGCLPVVDDKGTLVGIITRS 117 (122)
T ss_pred CCCeEEEEcCCCCEEEEEEHH
Confidence 999999999999999999853
No 74
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.61 E-value=0.00015 Score=59.87 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=75.3
Q ss_pred cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----------
Q 041297 17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP----------- 85 (379)
Q Consensus 17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~----------- 85 (379)
+++....++++|++.+.+.+...+||=+. ..+++|.++.-|++.++.+
T Consensus 4 ~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---------------------~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~ 62 (132)
T cd04636 4 ITVKKDDTLRDVVEILLTGKISGVPVVDN---------------------EGRVVGIVSEGDLIRKIYKGKGLFYVTLLY 62 (132)
T ss_pred eEeCCCCcHHHHHHHHHHhCCCccceECC---------------------CCCEEEEEeHHHHHHHHhccCCcccccccc
Confidence 56778899999999998887777787652 2469999999999876642
Q ss_pred -----------------ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEE
Q 041297 86 -----------------CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCW 147 (379)
Q Consensus 86 -----------------VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~ 147 (379)
++++.. .....++++++|.++++.|. .|.++++|+++ .+-+ =+
T Consensus 63 ~~~~~~~~~~~~~~~~~v~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~i---------------Gv 123 (132)
T cd04636 63 SVIFLDESKIKKLLGKKVEEIMT---KKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLV---------------GI 123 (132)
T ss_pred cccccchHHHHHHcCCCHHHhcc---CCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEE---------------EE
Confidence 112221 23577899999999999998 68888988875 2111 18
Q ss_pred eeHHHHHHH
Q 041297 148 LTQEDLIRY 156 (379)
Q Consensus 148 LTQeDVvRF 156 (379)
+|+.|+++|
T Consensus 124 it~~dl~~~ 132 (132)
T cd04636 124 ISRGDIIRS 132 (132)
T ss_pred EEHHHhhcC
Confidence 999999987
No 75
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.60 E-value=0.00031 Score=54.80 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=76.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
...++|++++-++++.|. +|.+.++|.+++ + -.-++|..|+.++. ...++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~--~--------------~~Giv~~~~l~~~~----------~~~~~~~~ 56 (105)
T cd04599 3 PITIDPLDSVGRAARLMEKHRIGGLPVVEDG--K--------------LVGIITSRDVRRAH----------PNRLVADA 56 (105)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEECC--E--------------EEEEEehHHhhccc----------ccCCHHHH
Confidence 356899999999999998 577888876531 1 12389999998743 12234443
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+++ +..++.+++..+|++.|.+. +...+||++. |+++|=|+..++.
T Consensus 57 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 57 --MTRE-VVTISPEASLLEAKRLMEEK--KIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred --ccCC-CEEECCCCCHHHHHHHHHHc--CCCEeeEEEC-CEEEEEEEHHHhc
Confidence 4667 89999999999999999875 3467999997 9999999988874
No 76
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.59 E-value=0.00032 Score=56.07 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=77.9
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+++..+|++.|.+.- ....++|+|.+|+++|-++..+|...... +. +.
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-----------~~----~~---------- 56 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGS-NQRRFVVVDNEGRYVGIISLADLRAIPTS-----------QW----AQ---------- 56 (114)
T ss_pred cceeCCCCCHHHHHHHHhccC-CceeEEEEcCCCcEEEEEEHHHHHHHHHh-----------hc----cc----------
Confidence 788999999999999886432 24689999999999999998887541100 00 00
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
... .+. +.......+..+..+|..++.++..|
T Consensus 57 -----------------------~~v---------~~~----------------~~~~~~~~~v~~~~~l~~a~~~~~~~ 88 (114)
T cd04801 57 -----------------------TTV---------IQV----------------MTPAAKLVTVLSEESLAEVLKLLEEQ 88 (114)
T ss_pred -----------------------cch---------hhh----------------hcccccceEECCCCcHHHHHHHHHHC
Confidence 000 000 00112346889999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|++|.++|+++..
T Consensus 89 ~~~~l~Vv~~~~~~~Gvl~~~ 109 (114)
T cd04801 89 GLDELAVVEDSGQVIGLITEA 109 (114)
T ss_pred CCCeeEEEcCCCcEEEEEecc
Confidence 999999999999999999864
No 77
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.59 E-value=0.00039 Score=59.60 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=70.5
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCC-CCC-----
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNP-TPN----- 169 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p-~p~----- 169 (379)
+..+.|++++-||++.|. ++.+.++|+++.-+- +=+||..|+++++...- +.. ...
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l---------------~Givt~~Dl~~~~~~~~--~~~~~~~~~~~~ 65 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFL---------------EGILTLGDIQRFLFTNK--TTRVQPEDETKQ 65 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeE---------------EEEEEHHHHHHHHhhcc--ccccccchhhcc
Confidence 457899999999999999 688888887653211 11899999999997521 111 110
Q ss_pred ------Ccccccccc----cCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCC
Q 041297 170 ------QPINSHNII----DDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEG 216 (379)
Q Consensus 170 ------~SI~sLG~I----~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dG 216 (379)
..+..-+++ ..+ +..+..++++.+|+++|.+. +...+|||+.++
T Consensus 66 ~~~~~v~~i~~~~~~~~~~~~~-~~~v~~~~~l~ea~~~m~~~--~~~~lPVvd~~~ 119 (133)
T cd04592 66 TNTCLVSSVCTKGISYGGQECG-LWTCTPDTDLTTAKKLMEAK--GVKQLPVVKRGV 119 (133)
T ss_pred cccccHHHHhhhhhhhcccCCC-CEEECCCCCHHHHHHHHHHc--CCCcCCEecCCc
Confidence 012211222 356 88999999999999999886 558999999743
No 78
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.57 E-value=0.00052 Score=55.32 Aligned_cols=118 Identities=11% Similarity=0.110 Sum_probs=81.8
Q ss_pred CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297 180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL 259 (379)
Q Consensus 180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l 259 (379)
++ +..+..+++..++++.|.+. ....++|++.+|+++|=++..+|..+.....+ ..+..+.+
T Consensus 2 ~~-~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~-------~~~~~~~~-------- 63 (124)
T cd04600 2 RD-VVTVTPDTSLEEAWALLRRH--RIKALPVVDGDRRLVGIVTQRDLLRHARPDGR-------RPLRGRLR-------- 63 (124)
T ss_pred CC-cEEeCCCCCHHHHHHHHHHc--CCceeeEECCCCCEEEEEEHHHHHhhhccccc-------chhhhhhh--------
Confidence 44 78899999999999999764 34689999999999999998888653210000 00000000
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297 260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA 339 (379)
Q Consensus 260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA 339 (379)
.... . . . ...--+..++++.+..+|..++..+
T Consensus 64 ------------------~~~~----~-~-----------------~--------i~~~~~~~~~~~~~~~~l~~~~~~~ 95 (124)
T cd04600 64 ------------------GRDK----P-E-----------------T--------VGDIMSPPVVTVRPDTPIAELVPLL 95 (124)
T ss_pred ------------------cccc----c-c-----------------c--------HHHhccCCCeeeCCCCcHHHHHHHH
Confidence 0000 0 0 0 0000123578999999999999999
Q ss_pred HHcCCcEEEEeeCCCCcccceEee
Q 041297 340 LARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 340 laHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
..++.+++=|+|++|.++|+|+..
T Consensus 96 ~~~~~~~~~Vv~~~g~~~Gvit~~ 119 (124)
T cd04600 96 ADGGHHHVPVVDEDRRLVGIVTQT 119 (124)
T ss_pred HhcCCCceeEEcCCCCEEEEEEhH
Confidence 999999999999999999999753
No 79
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.55 E-value=0.00071 Score=53.68 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=78.4
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+++..+|++.|.+. ....++|+|.+|+++|-++..+|..... + .|..++
T Consensus 4 ~~~~~~~~~~~~a~~~~~~~--~~~~~~V~d~~~~~~G~v~~~~l~~~~~------------------~--~~v~~~--- 58 (108)
T cd04596 4 TGYLTTTDTVKDWHELNKET--GHSRFPVVDEKNKVVGIVTSKDVAGKDP------------------D--TTIEKV--- 58 (108)
T ss_pred cEEeCCCCCHHHHHHHHHHc--CCCceeEECCCCeEEEEecHHHHhcccc------------------c--ccHHHH---
Confidence 78899999999999999775 3468999999999999998877753110 0 000000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
-...+.++.+..+|.+++..+..+
T Consensus 59 --------------------------------------------------------~~~~~~~v~~~~~l~~~~~~~~~~ 82 (108)
T cd04596 59 --------------------------------------------------------MTKNPITVNPKTSVASVAHMMIWE 82 (108)
T ss_pred --------------------------------------------------------hcCCCeEECCCCCHHHHHHHHHHc
Confidence 012367899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|++|.++|+++.+
T Consensus 83 ~~~~~~Vv~~~~~~~G~it~~ 103 (108)
T cd04596 83 GIEMLPVVDDNKKLLGIISRQ 103 (108)
T ss_pred CCCeeeEEcCCCCEEEEEEHH
Confidence 999999999999999999854
No 80
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.54 E-value=0.00048 Score=64.49 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=78.0
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+.|+.++-+|++.|. .+...++|+++..+- .=++|+.|+.+++.+.. -+..++.++
T Consensus 166 ~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~---------------~Givt~~dl~~~~~~~~-----~~~~~v~~i 225 (268)
T TIGR00393 166 LPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQL---------------VGVFTDGDLRRALLGGG-----SLKSEVRDF 225 (268)
T ss_pred CCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCE---------------EEEEEcHHHHHHHhcCC-----cccCcHHHh
Confidence 557889999999999998 577788777643221 12899999999765311 234556654
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDIS 223 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeIS 223 (379)
..++ +..|..+++..+|++.|.+. +...+||||.+|+++|-|.
T Consensus 226 --m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 226 --MTLG-PKTFKLDALLLEALEFLERR--KITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred --CCCC-CeEECCCCcHHHHHHHHHHc--CCcEEEEECCCCeEEEEEC
Confidence 4666 88999999999999999885 4489999999999999763
No 81
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.54 E-value=0.00017 Score=70.82 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=88.4
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc------ccc
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP------CFC 88 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~------VS~ 88 (379)
+-|++.-..||.+|.+.+-++++...||-+ ..++||+++.-||.--+++ ||+
T Consensus 181 ~~i~v~~d~tl~eaak~f~~~~i~GaPVvd----------------------~dk~vGiit~~dI~~aia~g~~~~kV~~ 238 (294)
T COG2524 181 KLITVRPDDTLREAAKLFYEKGIRGAPVVD----------------------DDKIVGIITLSDIAKAIANGNLDAKVSD 238 (294)
T ss_pred CceEecCCccHHHHHHHHHHcCccCCceec----------------------CCceEEEEEHHHHHHHHHcCCccccHHH
Confidence 447788899999999999999999999987 2379999999999988885 999
Q ss_pred cccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHH
Q 041297 89 SFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFL 158 (379)
Q Consensus 89 li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl 158 (379)
+.-+. +.+++.++.+.|||.+|- +|+-||+|+++..|-.+ .+|++||++-|.
T Consensus 239 ~M~k~---vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvG---------------iITrTDIL~~ia 291 (294)
T COG2524 239 YMRKN---VITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVG---------------IITRTDILTRIA 291 (294)
T ss_pred HhccC---CceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEE---------------EEehHHHHHHhh
Confidence 88754 789999999999999998 79999999876544311 899999998664
No 82
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.53 E-value=0.00038 Score=67.61 Aligned_cols=108 Identities=23% Similarity=0.194 Sum_probs=79.6
Q ss_pred ceEEeCCCCchhHHHHHHhc-CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297 96 IVRHLKPSASLLEAVDLLLG-GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINS 174 (379)
Q Consensus 96 ll~~V~P~tsLLdAie~m~~-G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~s 174 (379)
.+..+.|+++|.||++.|.+ |...++|++...+- .=.+|..|+.|.+.... +++..++.+
T Consensus 213 ~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~l---------------vGivt~~Dl~~~~~~~~----~~~~~~v~~ 273 (326)
T PRK10892 213 EIPHVSKTASLRDALLEITRKNLGMTVICDDNMKI---------------EGIFTDGDLRRVFDMGI----DLRQASIAD 273 (326)
T ss_pred CCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcE---------------EEEEecHHHHHHHhcCC----CcccCCHHH
Confidence 35679999999999999984 54444446532211 11899999988654321 334456665
Q ss_pred cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+ .+++ +..|..++++.+|++.|.+. +...+|||+ +|+++|=|+..||-
T Consensus 274 i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVv~-~~~lvGiit~~dil 321 (326)
T PRK10892 274 V--MTPG-GIRVRPGILAVDALNLMQSR--HITSVLVAD-GDHLLGVLHMHDLL 321 (326)
T ss_pred h--cCCC-CEEECCCCCHHHHHHHHHHC--CCcEEEEee-CCEEEEEEEhHHhH
Confidence 3 4667 89999999999999999875 557899997 68999999988874
No 83
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.53 E-value=0.00057 Score=53.58 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=76.5
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+.+..+|+..|++. ....++|++.+|+++|-++..+|..... + +..+++
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~--~~~~~~v~d~~g~~~Giv~~~dl~~~~~-------~-~~~~~~--------------- 57 (106)
T cd04582 3 PITVRPDDPLSDALGLMDDS--DLRALTVVDADGQPLGFVTRREAARASG-------G-CCGDHA--------------- 57 (106)
T ss_pred CcEecCCCcHHHHHHHHHhc--CCCEEEEECCCCCEEEEEeHHHHHHhcc-------c-chhhhc---------------
Confidence 67889999999999998654 3368899999999999999888764210 0 000000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
+....++.+..+|.+++..+..+
T Consensus 58 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
T cd04582 58 ---------------------------------------------------------EPFKVTVSVDDDLRIVLSRMFAH 80 (106)
T ss_pred ---------------------------------------------------------ccCCEEECCCCCHHHHHHHHHHC
Confidence 01246789999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
++.++=|+|++|.++|+++-+
T Consensus 81 ~~~~~~Vv~~~~~~~Gvi~~~ 101 (106)
T cd04582 81 DMSWLPCVDEDGRYVGEVTQR 101 (106)
T ss_pred CCCeeeEECCCCcEEEEEEHH
Confidence 999999999999999999743
No 84
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.53 E-value=0.00055 Score=53.62 Aligned_cols=101 Identities=15% Similarity=0.263 Sum_probs=75.4
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+.+++++-++++.|. .+.++++|++. ++ -.-+++..|+++. . ...++.++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~--------------~~g~v~~~~l~~~--------~--~~~~~~~~ 57 (107)
T cd04610 4 VITVSPDNTVKDVIKLIKETGHDGFPVVDN--GK--------------VVGIVSARDLLGK--------D--PDETVEEI 57 (107)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CE--------------EEEEEEHHHhhcc--------C--ccccHHHh
Confidence 456899999999999998 46677777653 21 1128999998752 1 13345544
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.++. +..+..+++..+|++.|.+. +...+||++.+|+++|-|+..+|-
T Consensus 58 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv~~~g~~~Gvi~~~di~ 105 (107)
T cd04610 58 --MSKD-LVVAVPEMDIMDAARVMFRT--GISKLPVVDENNNLVGIITNTDVI 105 (107)
T ss_pred --CCCC-CeEECCCCCHHHHHHHHHHh--CCCeEeEECCCCeEEEEEEHHHhh
Confidence 3556 78899999999999999875 337899999999999999887763
No 85
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.50 E-value=0.00039 Score=56.08 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=79.0
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVR 261 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~ 261 (379)
+..+..+.+..+|+..|.+. ....++|+|.+ |+++|-|+..+|...-.. - .++ . .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~--~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~-------~--~~~----~------~--- 58 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRN--GFRRLPVVDEGTGKLVGIITATDILKYLGG-------G--EKF----N------K--- 58 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHc--CcccceeEeCCCCEEEEEEEHHHHHHHhhc-------c--chh----c------c---
Confidence 77889999999999999764 34689999997 999999998887541100 0 000 0 0
Q ss_pred HHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHH
Q 041297 262 LVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALA 341 (379)
Q Consensus 262 ~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAla 341 (379)
.+. .++.. . . ..+...--...+.+|.+..+|..++..+..
T Consensus 59 -~~~---~~~~~----~---------~-----------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~ 98 (125)
T cd04631 59 -IKT---GNGLE----A---------I-----------------------NEPVRSIMTRNVITITPDDSIKDAAELMLE 98 (125)
T ss_pred -ccc---cccch----h---------h-----------------------hcCHHHHhcCCceEeCCCCcHHHHHHHHHH
Confidence 000 00000 0 0 000000012347899999999999999999
Q ss_pred cCCcEEEEeeCCCCcccceEee
Q 041297 342 RRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 342 HRV~~vWVvd~e~~l~~~v~~~ 363 (379)
++.+++=|+|++|.++|+|+..
T Consensus 99 ~~~~~~~V~~~~~~~~Gvit~~ 120 (125)
T cd04631 99 KRVGGLPVVDDDGKLVGIVTER 120 (125)
T ss_pred cCCceEEEEcCCCcEEEEEEHH
Confidence 9999999999989999999853
No 86
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.50 E-value=0.00033 Score=55.03 Aligned_cols=106 Identities=21% Similarity=0.189 Sum_probs=76.3
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+.+..++++.|.+. ..+.++|++.+|+++|-++..+|...- ... ..+
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~Giv~~~~l~~~~-------~~~-------~~~----------- 55 (113)
T cd04623 3 VITVRPDATVAEAAKLMAEK--NIGAVVVVDDGGRLVGIFSERDIVRKV-------ALR-------GAS----------- 55 (113)
T ss_pred CEEECCCCcHHHHHHHHHHc--CCCeEEEECCCCCEEEEEehHHHHHHH-------hhc-------CCC-----------
Confidence 77899999999999999764 347899999999999999887774310 000 000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. . +. . .+.--+....++.+..++.+++..+..+
T Consensus 56 -----------------------~-~----------~~-----~--------~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 88 (113)
T cd04623 56 -----------------------A-L----------DT-----P--------VSEIMTRNVITVTPDDTVDEAMALMTER 88 (113)
T ss_pred -----------------------c-c----------cc-----C--------HHHhcCCCcEEECCCCcHHHHHHHHHHc
Confidence 0 0 00 0 0000012357899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++.|+|+ |.++|+|+..
T Consensus 89 ~~~~~~Vv~~-~~~~Gvit~~ 108 (113)
T cd04623 89 RFRHLPVVDG-GKLVGIVSIG 108 (113)
T ss_pred CCCEeEEEeC-CEEEEEEEHH
Confidence 9999999998 8999999864
No 87
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.50 E-value=0.0004 Score=67.07 Aligned_cols=105 Identities=11% Similarity=0.081 Sum_probs=80.1
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..|+.+++..+|++.|.+. ....++|||++|+++|-|+..+|... + .+. .+++..
T Consensus 209 ~~~v~~~~sv~~a~~~~~~~--~~~~~~Vvd~~g~~iG~vt~~dl~~~-------~-----------~~~-~~~~~~--- 264 (321)
T PRK11543 209 IPQVALTASVMDAMLELSRT--GLGLVAVCDAQQQVQGVFTDGDLRRW-------L-----------VGG-GALTTP--- 264 (321)
T ss_pred CcEeCCCCCHHHHHHHHHHc--CCCEEEEEcCCCcEEEEecHHHHHHH-------H-----------hCC-CCcCCc---
Confidence 88999999999999999764 44789999999999999998887530 0 000 000000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. .|. -+..++++.+..+|.+++..+..|
T Consensus 265 ---------------------------------v-~~i------------------m~~~~~~v~~~~~l~~a~~~m~~~ 292 (321)
T PRK11543 265 ---------------------------------V-NEA------------------MTRGGTTLQAQSRAIDAKEILMKR 292 (321)
T ss_pred ---------------------------------H-HHh------------------cCCCCEEECCCCCHHHHHHHHHHc
Confidence 0 000 113468899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
++.++=|||++|.++|+|+.+
T Consensus 293 ~~~~lpVvd~~~~lvGvIt~~ 313 (321)
T PRK11543 293 KITAAPVVDENGKLTGAINLQ 313 (321)
T ss_pred CCCEEEEEcCCCeEEEEEEHH
Confidence 999999999999999999854
No 88
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.49 E-value=0.00027 Score=56.61 Aligned_cols=106 Identities=12% Similarity=0.058 Sum_probs=76.6
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVR 261 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~ 261 (379)
+..++.+++..+|++.|++. ..+.++|++.+ |+++|-++..+|.. ++ +..+..+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~~G~v~~~dl~~-------~~-----------~~~~~~~~---- 58 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEH--GVSSLVVEKRRESDAYGIVTMRDILK-------KV-----------VAEGRDPD---- 58 (114)
T ss_pred cEEECCCCcHHHHHHHHHHc--CCCEEEEEECCCCcEEEEEehHHHHH-------HH-----------HhCCCCCC----
Confidence 78899999999999999764 34789999997 99999998877643 00 00000000
Q ss_pred HHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHH
Q 041297 262 LVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALA 341 (379)
Q Consensus 262 ~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAla 341 (379)
. . .. ++. -.....++.+..+|.++|..+..
T Consensus 59 ------------------------~-~------~v-~~~------------------~~~~~~~v~~~~~l~~~~~~~~~ 88 (114)
T cd04630 59 ------------------------R-V------NV-YEI------------------MTKPLISVSPDMDIKYCARLMER 88 (114)
T ss_pred ------------------------c-c------CH-HHH------------------hcCCCeeECCCCCHHHHHHHHHH
Confidence 0 0 00 000 01246799999999999999999
Q ss_pred cCCcEEEEeeCCCCcccceEee
Q 041297 342 RRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 342 HRV~~vWVvd~e~~l~~~v~~~ 363 (379)
++.+++=|+|+ |.++|+|+.+
T Consensus 89 ~~~~~~~Vvd~-~~~~Gvi~~~ 109 (114)
T cd04630 89 TNIRRAPVVEN-NELIGIISLT 109 (114)
T ss_pred cCCCEeeEeeC-CEEEEEEEHH
Confidence 99999999998 9999999854
No 89
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.49 E-value=0.00055 Score=54.96 Aligned_cols=106 Identities=15% Similarity=0.241 Sum_probs=74.1
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
...+.+++++-+|++.|. ++..+++|++..-.+ +.-.=|+|..|+.. ... ....+.+
T Consensus 4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~------------~~~~G~v~~~dl~~-~~~--------~~~~v~~- 61 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSG------------GKLLGIVTSRDIDF-LTD--------SETPLSE- 61 (114)
T ss_pred CeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcC------------CEEEEEEEhHHhhh-hhc--------cCCCHHH-
Confidence 356789999999999998 577778776642100 00112899999863 211 1223443
Q ss_pred ccccCCcEEEEec--CCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHY--DDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~--~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+..+. +..+.. +++..++++.|++. +...+|||+.+|+++|=|+-.++.
T Consensus 62 -~~~~~-~~~~~~~~~~~l~~~l~~~~~~--~~~~~pVv~~~~~~~Gvit~~di~ 112 (114)
T cd04602 62 -VMTPR-EVLVVAPTGITLEEANEILRES--KKGKLPIVNDDGELVALVTRSDLK 112 (114)
T ss_pred -hcCCC-ceEEECCCCCCHHHHHHHHHhc--CCCceeEECCCCeEEEEEEHHHhh
Confidence 34555 666766 99999999999885 447899999999999999988764
No 90
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.49 E-value=0.00067 Score=55.43 Aligned_cols=119 Identities=17% Similarity=0.226 Sum_probs=75.8
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..+..+++..+|+++|.+. ..+.++|++.+|+++|-|+..+|... +.. . . .
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~~G~it~~dl~~~-------~~~--~-~------~---------- 54 (128)
T cd04632 3 VITVREDDSVGKAINVLREH--GISRLPVVDDNGKLTGIVTRHDIVDF-------VVR--D-R------D---------- 54 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHc--CCCEEEEECCCCcEEEEEEHHHHHHH-------Hhh--h-h------h----------
Confidence 77889999999999999875 45899999999999999987776430 000 0 0 0
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
+...+ +.....+... . . .. .+. -....++|.+..+|.++|..+...
T Consensus 55 -~~~~~--~~~~~~~~~~-----~-~------~~-~~~------------------~~~~~~~v~~~~~l~~~l~~~~~~ 100 (128)
T cd04632 55 -KARTG--DRSGEKERML-----D-L------PV-YDA------------------MSSPVITASPNDSVRDAVDRMLEN 100 (128)
T ss_pred -hcchh--hhhhhhhhhc-----c-C------cH-HHH------------------hcCCCceECCCCcHHHHHHHHHhC
Confidence 00000 0000000000 0 0 00 000 113368899999999999999999
Q ss_pred CCcEEEEee--CCCCcccceEee
Q 041297 343 RDRLRSMAK--AENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd--~e~~l~~~v~~~ 363 (379)
+.+++=|++ ++|.++|+|+..
T Consensus 101 ~~~~~~V~~~~~~~~~~Gvit~~ 123 (128)
T cd04632 101 DDSSVVVVTPDDDTKVVGILTKK 123 (128)
T ss_pred CCCeEeEeccCCCCcEEEEEEhH
Confidence 987776663 468999999853
No 91
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.49 E-value=0.00037 Score=57.23 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=75.1
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH-----HHhhhcccCCCCCC
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY-----FLNFIGLLNPTPNQ 170 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF-----Ll~~ig~l~p~p~~ 170 (379)
...+.+++++-+|++.|. ++.+.++|+++..+- .=++|..|+.+. +... + ...+..
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~---------------~Giv~~~dl~~~~~~~~~~~~-~--~~~~~~ 64 (126)
T cd04640 3 PIVIPADTSIDEALELMIKHGVRLLLVVDSDDNF---------------IGVITAVDLLGEEPIKRIQEG-G--ISRSEL 64 (126)
T ss_pred CeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcE---------------EEEEEHHHHhhChhhHHHHHc-C--CCchhe
Confidence 467899999999999998 677888887643221 118999999863 2221 0 012234
Q ss_pred cccccccccCCc-EEEEe----cCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccC
Q 041297 171 PINSHNIIDDAG-ILAIH----YDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLN 228 (379)
Q Consensus 171 SI~sLG~I~~~~-v~aV~----~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~ 228 (379)
++.++ .+++- +..++ .++++.++++.|.+. +...+||||.+ |+++|-|+-.+|.
T Consensus 65 ~v~~i--m~~~~~~~~~~~~~~~~~~l~~~l~~m~~~--~~~~lpVvd~~~~~~~G~it~~di~ 124 (126)
T cd04640 65 TVADV--MTPKEDLKALDLEELENASVGDVVETLKAS--GRQHALVVDREHHQIRGIISTSDIA 124 (126)
T ss_pred EHHHh--cCchhhhccccHHHhccCcHHHHHHHHHHC--CCceEEEEECCCCEEEEEEeHHHHh
Confidence 45543 34330 23333 578988999999876 44789999998 8999999988774
No 92
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.46 E-value=0.00032 Score=56.28 Aligned_cols=100 Identities=21% Similarity=0.226 Sum_probs=75.8
Q ss_pred ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc----------
Q 041297 16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------- 85 (379)
Q Consensus 16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------- 85 (379)
-+++....|+.++++.+.+++...+||.+. ++++|+++.-|+.-++..
T Consensus 3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~----------------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~ 60 (121)
T cd04633 3 VITVSPDDRVSHARRLMLDHDISRLPVIEG----------------------GKLVGIVTEKDIADALRSFRPLVRDRHQ 60 (121)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeeEEEEC----------------------CEEEEEEchHHHHHhhhhhhhcccchhh
Confidence 356778889999999999888889999872 369999999998765441
Q ss_pred --------ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297 86 --------CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 156 (379)
Q Consensus 86 --------VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF 156 (379)
+.++.. -....++|+++|.++++.|. .|.+.++|+++ .+- .=++|+.|+++|
T Consensus 61 ~~~~~~~~~~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~---------------~Gvi~~~dl~~~ 121 (121)
T cd04633 61 ERRIRNLPVSDIMT---RPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKL---------------VGIVTRTDILRY 121 (121)
T ss_pred hhhhhccCHHHHcc---CCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEE---------------EEEEEHHHhhcC
Confidence 222221 23678999999999999998 68888988765 211 128999999876
No 93
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.43 E-value=0.00095 Score=52.35 Aligned_cols=103 Identities=22% Similarity=0.308 Sum_probs=74.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
...+++++++-++++.|. .+.++++|+++..+ -+=++|.+|+.+. .. ...++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~---------------~~G~v~~~~l~~~-------~~--~~~~v~~~ 59 (110)
T cd04601 4 PITVSPDATVAEALELMAEYGISGLPVVDDDGK---------------LVGIVTNRDLRFE-------TD--LDKPVSEV 59 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCE---------------EEEEEEhhHeeec-------cc--CCCCHHHh
Confidence 356899999999999998 57888888765311 1127888888532 11 23455554
Q ss_pred ccccCCcEEEEec-CCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHY-DDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~-~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.++. +..+.. +++..++++.|.+. +...+|||+.+|+++|-|+..++-
T Consensus 60 --~~~~-~~~~~~~~~~l~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvi~~~dil 108 (110)
T cd04601 60 --MTPE-NLLTTVEGTSLEEALELLHEH--KIEKLPVVDDEGKLKGLITVKDIE 108 (110)
T ss_pred --cccC-ceEEecCCCCHHHHHHHHHHh--CCCeeeEEcCCCCEEEEEEhhhhh
Confidence 3444 455566 99999999999886 447899999999999999988763
No 94
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.42 E-value=0.00054 Score=54.83 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=77.7
Q ss_pred EeCCCCchhHHHHHHh-cC-ccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297 99 HLKPSASLLEAVDLLL-GG-VQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN 176 (379)
Q Consensus 99 ~V~P~tsLLdAie~m~-~G-~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG 176 (379)
.+.|++++-+|++.|. ++ .+.++|+++ .+- +=+++..|+.+++....+ ....+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~---------------~G~v~~~~l~~~~~~~~~-~~~~~~~~v~~~- 66 (119)
T cd04598 5 TVSPDTTVNDVLERFERDPDLSALAVVDD-GRP---------------VGLIMREALMELLSTPYG-RALYGKKPVSEV- 66 (119)
T ss_pred ccCCCCcHHHHHHHHHhCCCccEEEEEEC-Cee---------------EEEEEHHHHHHHHhchhh-HHHHcCCcHHHh-
Confidence 5789999999999997 45 778888766 211 128999999987764310 001134456654
Q ss_pred cccCCcEEEEecCCchhcHHHHHHhccccC-ceeEEEcCCCcEEeeeCcccc
Q 041297 177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQ-TSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~-tAVAVVd~dGkLIGeISa~~L 227 (379)
.+++ +..++.+++..+|+..|.+..... ...+||+.+|+++|-|+..++
T Consensus 67 -~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di 116 (119)
T cd04598 67 -MDPD-PLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDL 116 (119)
T ss_pred -cCCC-cEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHH
Confidence 5677 899999999999999997642211 234588899999999998775
No 95
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.41 E-value=0.00052 Score=53.95 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=78.2
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
++.+..+++..+|++.|.+.. .+.+||++. |+++|-++..+|....... +. +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~-~~~~G~v~~~dl~~~~~~~--------------~~------~~~--- 56 (111)
T cd04612 3 VVTVPVDLTVDEVLALMFGER--HRGYPVVDD-GRLVGIVTLADIRRVPAEG--------------RE------ATV--- 56 (111)
T ss_pred CEEeCCCCcHHHHHHHHHHcC--CCcceEeeC-CeEEEEEEHHHHHHHHhcC--------------cc------ccc---
Confidence 778999999999999997653 478999998 9999999988875422100 00 000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. ....-.....++.+..++..++.++..+
T Consensus 57 -------------------------~--------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 85 (111)
T cd04612 57 -------------------------L--------------------------VGDVMTRDPVTASPDETLRDALKRMAER 85 (111)
T ss_pred -------------------------C--------------------------HHHhccCCCeEECCCCCHHHHHHHHHhC
Confidence 0 0000123368899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|.+|.+.|+|+..
T Consensus 86 ~~~~~~V~~~~~~~~G~it~~ 106 (111)
T cd04612 86 DIGRLPVVDDSGRLVGIVSRS 106 (111)
T ss_pred CCCeeeEEcCCCCEEEEEEHH
Confidence 999999999999999999854
No 96
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.41 E-value=0.00077 Score=53.45 Aligned_cols=106 Identities=15% Similarity=0.081 Sum_probs=77.2
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
.+.+..+++..+|++.|.+. +...++|+|.+|+++|-++..+|.....+ +++. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~vvd~~~~~~G~v~~~dl~~~~~~----------~~~~---~----------- 56 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTS--GSRALPVVDDKKRLVGIITRYDVLSYALE----------SEEL---K----------- 56 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHc--CCceEeEEcCCCCEEEEEEHHHHHHhhhh----------hhhh---c-----------
Confidence 46788999999999999765 34789999999999999988777431000 0000 0
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. . .. .+. -...+.++.+..++.+++.++..+
T Consensus 57 -----------------------~-~------~i-~~~------------------~~~~~~~v~~~~~l~~~~~~~~~~ 87 (113)
T cd04615 57 -----------------------D-A------KV-REV------------------MNSPVITIDANDSIAKARWLMSNN 87 (113)
T ss_pred -----------------------C-C------cH-HHh------------------ccCCceEECCCCcHHHHHHHHHHc
Confidence 0 0 00 000 012467889999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|++|.++|+|+.+
T Consensus 88 ~~~~~~Vvd~~g~~~Gvvt~~ 108 (113)
T cd04615 88 NISRLPVLDDKGKVGGIVTED 108 (113)
T ss_pred CCCeeeEECCCCeEEEEEEHH
Confidence 999999999999999999864
No 97
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.41 E-value=0.00051 Score=57.12 Aligned_cols=110 Identities=13% Similarity=0.207 Sum_probs=80.5
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+.|+.++-+|++.|. +++++++|++...+- +=++|..|+++.+.+... -+..+++++
T Consensus 4 ~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~---------------~Gii~~~dl~~~~~~~~~----~~~~~v~~i 64 (124)
T cd04608 4 PVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKI---------------LGMVTLGNLLSSLSSGKV----QPSDPVSKA 64 (124)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCE---------------EEEEEHHHHHHHHHHhcc----CCCCcHHHH
Confidence 467899999999999998 578888887643211 128999999998876322 123455553
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhc-------cccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQS-------HIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a-------~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+++ +..+.++++..++.++|..- -....+++|++.+|+++|=|+..||-
T Consensus 65 --m~~~-~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~ 121 (124)
T cd04608 65 --LYKQ-FKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLL 121 (124)
T ss_pred --hhcc-ceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhh
Confidence 3666 89999999999998865321 11346788899889999999988873
No 98
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.39 E-value=0.0006 Score=54.04 Aligned_cols=100 Identities=14% Similarity=0.131 Sum_probs=75.1
Q ss_pred ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------cc
Q 041297 16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------CF 87 (379)
Q Consensus 16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------VS 87 (379)
-+++....|+++|++.+.+.+...++|-+. .+++|+|+.-|++..+.+ +.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----------------------~~~~G~v~~~~l~~~~~~~~~~~~~~i~ 60 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRDG----------------------DPRLGIVTRTDLLDAVLLDGLPSSTPVG 60 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEecC----------------------CeEEEEEEHHHHHHHHHcCCCCCCCCHH
Confidence 356778889999999998888778888652 358999999998865431 33
Q ss_pred ccccCCCCceEEeCCCCchhHHHHHHhc-CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297 88 CSFAKDSGIVRHLKPSASLLEAVDLLLG-GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 156 (379)
Q Consensus 88 ~li~~~~gll~~V~P~tsLLdAie~m~~-G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF 156 (379)
++.. -.+..+.|++++.|+++.|.+ +.+.++|++.+ + ... ++|+.|+++|
T Consensus 61 ~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--~--------~~G------~it~~dl~~~ 111 (111)
T cd04589 61 EIAT---FPLITVDPDDFLFNALLLMTRHRIHRVVVREGG--E--------VVG------VLEQTDLLSF 111 (111)
T ss_pred HHhC---CCcEEECCCCcHHHHHHHHHHhCccEEEEeeCC--E--------EEE------EEEhHHhhcC
Confidence 3332 236689999999999999994 88888887641 1 111 8999999987
No 99
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.39 E-value=0.00039 Score=69.67 Aligned_cols=112 Identities=23% Similarity=0.305 Sum_probs=83.8
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHh-hhcccCCCCCCcccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN-FIGLLNPTPNQPINS 174 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~-~ig~l~p~p~~SI~s 174 (379)
|.++.+.|++-+|-.++. .+++-|.|++.+.|-++ ..||.|.....-- -..-|...+..++
T Consensus 255 Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~G---------------iVt~~dl~~~a~~~p~qrlr~~~~~~v-- 317 (382)
T COG3448 255 VVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVG---------------IVTQRDLLKHARPSPFQRLRFLRPPTV-- 317 (382)
T ss_pred ceecCCcCChHHHHHHHHHcCcccccccccccceee---------------eeeHHHHhhccCcchHHHhhccCCCcc--
Confidence 789999999999999999 69999999887655422 6788887762211 0111112222222
Q ss_pred cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
=|++++. +..|.+++|+.+.++.+... ...++||+|++||++|=||-+||-
T Consensus 318 k~imt~~-v~tv~pdtpa~~lvp~lad~--g~H~lpvld~~g~lvGIvsQtDli 368 (382)
T COG3448 318 KGIMTTP-VVTVRPDTPAVELVPRLADE--GLHALPVLDAAGKLVGIVSQTDLI 368 (382)
T ss_pred cccccCc-ceeecCCCcHHHHHHHhhcC--CcceeeEEcCCCcEEEEeeHHHHH
Confidence 2567888 99999999999998888664 337999999999999999998873
No 100
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.39 E-value=0.00093 Score=52.13 Aligned_cols=98 Identities=19% Similarity=0.171 Sum_probs=73.9
Q ss_pred cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--ccccccCCC
Q 041297 17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--CFCSFAKDS 94 (379)
Q Consensus 17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--VS~li~~~~ 94 (379)
+.+....++.++++.+++.+...+||.+ + .+++|+|+.-|++.+... +.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~---------------------~~~~Giv~~~~l~~~~~~~~~~~~~~--- 58 (105)
T cd04599 4 ITIDPLDSVGRAARLMEKHRIGGLPVVE-D---------------------GKLVGIITSRDVRRAHPNRLVADAMT--- 58 (105)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEE-C---------------------CEEEEEEehHHhhcccccCCHHHHcc---
Confidence 4566788999999999888888899886 2 368999999998764322 444442
Q ss_pred CceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHH
Q 041297 95 GIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIR 155 (379)
Q Consensus 95 gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvR 155 (379)
.....+++++++-++++.|. +|...++|+++ .+- .=++|+.||++
T Consensus 59 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~---------------~G~it~~~l~~ 104 (105)
T cd04599 59 REVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKL---------------VGIITKGTIAL 104 (105)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEE---------------EEEEEHHHhcc
Confidence 24778999999999999998 79988888765 111 11888888863
No 101
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.38 E-value=0.0012 Score=52.10 Aligned_cols=104 Identities=18% Similarity=0.142 Sum_probs=76.8
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..|..+++..+|++.|.+. ....+||++.+|+++|-++..+|..+- +. . +.
T Consensus 3 ~~~v~~~~~i~e~~~~~~~~--~~~~~~V~~~~~~~~G~v~~~~l~~~~-------~~---~------~~---------- 54 (111)
T cd04639 3 FETLSPADTLDDAADALLAT--TQHEFPVVDGDGHLVGLLTRDDLIRAL-------AE---G------GP---------- 54 (111)
T ss_pred ceEcCCCCcHHHHHHHHHHc--CCCcceEECCCCcEEEEeeHHHHHHHH-------Hh---c------CC----------
Confidence 77899999999999998763 347899999999999999877664310 00 0 00
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. ++. .+. -.....++.+.+++.+++..+..|
T Consensus 55 -------------------~---~~v---------~~~------------------~~~~~~~i~~~~~~~~~~~~~~~~ 85 (111)
T cd04639 55 -------------------D---APV---------RGV------------------MRRDFPTVSPSATLDAVLRLMQQG 85 (111)
T ss_pred -------------------C---CcH---------HHH------------------hcCCCcEECCCCcHHHHHHHHHhc
Confidence 0 000 000 012357899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|++|.++|+++..
T Consensus 86 ~~~~~~Vv~~~~~~~G~it~~ 106 (111)
T cd04639 86 GAPAVPVVDGSGRLVGLVTLE 106 (111)
T ss_pred CCceeeEEcCCCCEEEEEEHH
Confidence 999999999989999999853
No 102
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.36 E-value=0.00037 Score=55.77 Aligned_cols=106 Identities=20% Similarity=0.185 Sum_probs=77.8
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..+..+++..+|++.|++. ....++|+|.+|+++|-++..+|..... ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~V~d~~~~~~G~v~~~dl~~~~~------------------~~---------- 52 (115)
T cd04593 3 PPVLSATTPLREAAEQLIES--KHGSALVVDRDGGVVGIITLPDLLRALE------------------AD---------- 52 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhC--CCcEEEEEcCCCCEEEEEEHHHHHHHHh------------------cc----------
Confidence 66788999999999999764 3478899999999999998777754110 00
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. . .+ .... .+ -......+|.+..+|.++|..+..|
T Consensus 53 -------------------~---~-~~---~~~~-~~------------------~~~~~~~~v~~~~~l~~~l~~~~~~ 87 (115)
T cd04593 53 -------------------E---A-GE---PSAV-DE------------------VATPPLLTVHPDEPLAHALDRMASR 87 (115)
T ss_pred -------------------c---c-cc---cccH-HH------------------hccCCceEECCCCCHHHHHHHHHHc
Confidence 0 0 00 0000 00 0123468899999999999999999
Q ss_pred CCcEEEEeeCC--CCcccceEee
Q 041297 343 RDRLRSMAKAE--NPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e--~~l~~~v~~~ 363 (379)
+.+++=|+|++ |.++|+|+..
T Consensus 88 ~~~~~~Vvd~~~~~~~~Gvit~~ 110 (115)
T cd04593 88 GLRQLPVVDRGNPGQVLGLLTRE 110 (115)
T ss_pred CCceeeEEeCCCCCeEEEEEEhH
Confidence 99999999998 8999999853
No 103
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.35 E-value=0.00094 Score=54.86 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=38.9
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
+..++.+++..+|++.|++. ....++|++.+|+++|-++..+|..
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~--~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 3 PIVIPADTSIDEALELMIKH--GVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CeEECCCCcHHHHHHHHHHc--CCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 67899999999999999764 4478999999999999999888864
No 104
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.34 E-value=0.0009 Score=69.85 Aligned_cols=176 Identities=15% Similarity=0.128 Sum_probs=112.3
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------- 85 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------- 85 (379)
+-+++....|+.+|++.+.+.+...+||-+. .++++|+|+.-||.-++.+
T Consensus 77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---------------------~g~l~Givt~~di~~~~~~~~~~~~~~~ 135 (546)
T PRK14869 77 KPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---------------------EGKLLGLVSLSDLARAYMDILDPEILSK 135 (546)
T ss_pred CCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---------------------CCEEEEEEEHHHHHHHHHhhcchhhhhh
Confidence 4577888999999999999999999999873 2469999999999875542
Q ss_pred ----cccccc--------------------------------CC-CCceEEeCCCCchhHHHHHHhcCccEEEEecC-Cc
Q 041297 86 ----CFCSFA--------------------------------KD-SGIVRHLKPSASLLEAVDLLLGGVQNLVILPA-GI 127 (379)
Q Consensus 86 ----VS~li~--------------------------------~~-~gll~~V~P~tsLLdAie~m~~G~~rllVi~s-~~ 127 (379)
+..|+. +. +|-++.+......+. .++.+|+..++|-.. ..
T Consensus 136 ~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~--~ai~~~~~~lIlt~g~~~ 213 (546)
T PRK14869 136 SPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQL--AAIEAGVRLLIITGGAPV 213 (546)
T ss_pred cCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHH--HHHHcCCCEEEECCCCCC
Confidence 111111 00 122222222222222 123355555555211 10
Q ss_pred -ccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccccccc-CCcEEEEecCCchhcHHHHHHhcccc
Q 041297 128 -KLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNIID-DAGILAIHYDDPAAFAIPLIAQSHIK 205 (379)
Q Consensus 128 -k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~I~-~~~v~aV~~~~~A~~Ai~lm~~a~~~ 205 (379)
+.+ -+......--.+.|+.|..+-...--. +.+|.++ .+ ++ +..++.+++..+|.+.|.+. +
T Consensus 214 ~~~v-----~~la~~~~i~ii~t~~dt~~t~~~l~~------~~~V~~i--M~~~~-~~~~~~~~~~~~~~~~m~~~--~ 277 (546)
T PRK14869 214 SEDV-----LELAKENGVTVISTPYDTFTTARLINQ------SIPVSYI--MTTED-LVTFSKDDYLEDVKEVMLKS--R 277 (546)
T ss_pred CHHH-----HHHHHhCCCeEEEecccHHHHHHHhhc------CCCHHHh--ccCCC-cEEECCCCcHHHHHHHHHhc--C
Confidence 000 011112233447788887766544211 3445554 45 66 99999999999999999876 4
Q ss_pred CceeEEEcCCCcEEeeeCccccCC
Q 041297 206 QTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 206 ~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
...+||||.+|+++|-|+..+|..
T Consensus 278 ~~~~PVvd~~g~lvGiit~~dl~~ 301 (546)
T PRK14869 278 YRSYPVVDEDGKVVGVISRYHLLS 301 (546)
T ss_pred CCceEEEcCCCCEEEEEEHHHhhc
Confidence 488999999999999999999865
No 105
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.33 E-value=0.0019 Score=50.54 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=76.4
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+.+..+|++.|.+. ....++|+|. |+++|-++..+|...... .++.++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~--~~~~~~v~d~-~~~~g~v~~~~l~~~~~~-------~~~~~~---------------- 57 (107)
T cd04610 4 VITVSPDNTVKDVIKLIKET--GHDGFPVVDN-GKVVGIVSARDLLGKDPD-------ETVEEI---------------- 57 (107)
T ss_pred cEEECCCCcHHHHHHHHHHc--CCCeeeEeEC-CEEEEEEEHHHhhccCcc-------ccHHHh----------------
Confidence 78899999999999999764 2367999987 999999998888642100 000000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
-...+.++.+..+|.+++..+..|
T Consensus 58 --------------------------------------------------------~~~~~~~v~~~~~l~~~~~~~~~~ 81 (107)
T cd04610 58 --------------------------------------------------------MSKDLVVAVPEMDIMDAARVMFRT 81 (107)
T ss_pred --------------------------------------------------------CCCCCeEECCCCCHHHHHHHHHHh
Confidence 012257788999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|++|.++|+++..
T Consensus 82 ~~~~~~Vv~~~g~~~Gvi~~~ 102 (107)
T cd04610 82 GISKLPVVDENNNLVGIITNT 102 (107)
T ss_pred CCCeEeEECCCCeEEEEEEHH
Confidence 999999999999999999854
No 106
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.33 E-value=0.00077 Score=51.62 Aligned_cols=105 Identities=21% Similarity=0.208 Sum_probs=77.5
Q ss_pred ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--cccc--cc
Q 041297 16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--CFCS--FA 91 (379)
Q Consensus 16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--VS~l--i~ 91 (379)
-+.+....+++++++.+...+...+||.+.. .+++|.++.-|++.++.. .... +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~ 61 (113)
T cd02205 3 VVTVSPDDTVAEALRLMLEHGISGLPVVDDD---------------------GRLVGIVTERDLLRALAEGGLDPLVTVG 61 (113)
T ss_pred ceEecCCCCHHHHHHHHHhcCCceEEEECCC---------------------CCEEEEEeHHHHHHHHHhccCCccccHH
Confidence 3567788999999999998888899998832 469999999999988874 1110 11
Q ss_pred C-CCCceEEeCCCCchhHHHHHHhc-CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297 92 K-DSGIVRHLKPSASLLEAVDLLLG-GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 156 (379)
Q Consensus 92 ~-~~gll~~V~P~tsLLdAie~m~~-G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF 156 (379)
. .......+.+++++.++++.|.+ +.+.++|++...+-. =++|+.|+++|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---------------G~i~~~dl~~~ 113 (113)
T cd02205 62 DVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLV---------------GIVTRSDILRA 113 (113)
T ss_pred HHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEE---------------EEEEHHHhhcC
Confidence 1 12346778899999999999995 688888876542211 18888888764
No 107
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.32 E-value=0.00059 Score=53.89 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=76.6
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+++..++++.|.+. ..+.++|++.+|+++|-++..++..+-.. ++ +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~d~~~~~~G~v~~~~i~~~~~~-----------~~----~----------- 55 (114)
T cd04604 4 LPLVSPDTSLKDALLEMSRK--GLGMTAVVDEDGRLVGIFTDGDLRRALEK-----------GL----D----------- 55 (114)
T ss_pred ccccCCCCcHHHHHHHHHhc--CccEEEEEcCCCCEEEEechHHHHHHHhc-----------cC----c-----------
Confidence 66788899999999998654 34789999999999999987766541100 00 0
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. ..... .+. -.....++.+..++.+++..+..+
T Consensus 56 -------------------------~---~~~~v-~~~------------------~~~~~~~v~~~~~~~~~~~~~~~~ 88 (114)
T cd04604 56 -------------------------I---LTLPV-ADV------------------MTRNPKTIDPDALAAEALELMEEN 88 (114)
T ss_pred -------------------------c---ccCCH-HHh------------------hccCCeEECCCCcHHHHHHHHHHc
Confidence 0 00000 000 112356899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|.+|.++|+|+.+
T Consensus 89 ~~~~~~Vv~~~~~~iG~it~~ 109 (114)
T cd04604 89 KITALPVVDDNGRPVGVLHIH 109 (114)
T ss_pred CCCEEEEECCCCCEEEEEEHH
Confidence 999999999999999999864
No 108
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.29 E-value=0.0016 Score=53.95 Aligned_cols=126 Identities=16% Similarity=0.145 Sum_probs=78.7
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+++..+|++.|.+. ....++|+|.+|+++|-|+..+|...-. ..+. . +.. ++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~--~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~-----------~~~~---~---~~~---~~ 61 (135)
T cd04586 4 VVTVSPETSVAEAARLMLDN--HISGLPVVDDDGRLVGIVSEGDLLRRAE-----------LGTE---R---RRA---RW 61 (135)
T ss_pred CEEeCCCCCHHHHHHHHHHc--CCCCceEECCCCCEEEEeeHHHHHHHhc-----------ccCc---c---hhh---hH
Confidence 78899999999999999764 3468999999999999999888753100 0000 0 000 00
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
..-+....... ....... . . . ...--...+.++.+++++..++..+..+
T Consensus 62 ~~~~~~~~~~~--~~~~~~~-----~---------------~-~--------v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 110 (135)
T cd04586 62 LDLLAGAEELA--AAFVRSH-----G---------------R-K--------VADVMTRPVVTVGEDTPLAEVAELMEEH 110 (135)
T ss_pred HHHhcchHHHH--HHHHHhc-----C---------------C-C--------HHHHhCCCceEeCCCCcHHHHHHHHHHc
Confidence 00000000000 0000000 0 0 0 0000112468899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEe
Q 041297 343 RDRLRSMAKAENPNFCPVRI 362 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~ 362 (379)
+.+++=|+| +|.++|+++.
T Consensus 111 ~~~~l~Vvd-~g~~~Gvit~ 129 (135)
T cd04586 111 RIKRVPVVR-GGRLVGIVSR 129 (135)
T ss_pred CCCccCEec-CCEEEEEEEh
Confidence 999999999 8999999975
No 109
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.28 E-value=0.00067 Score=53.04 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=73.8
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------c
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------C 86 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------V 86 (379)
+-+++....|+.+|++.+.+.+...+||-+. .+++|+|+.-|+...+.. +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----------------------~~~~G~v~~~dl~~~~~~~~~~~~~~~ 59 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD----------------------GRVVGSIDESDLLDALIEGKAKFSLPV 59 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC----------------------CeeEEEEeHHHHHHHHhccccccCcCH
Confidence 3467788899999999999888878888652 358999999998886542 3
Q ss_pred cccccCCCCceEEeCCCCchhHHHHHHhcCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297 87 FCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 156 (379)
Q Consensus 87 S~li~~~~gll~~V~P~tsLLdAie~m~~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF 156 (379)
.++.. ..+..++++++|.+++++|.+. +.++|++...+- . =++|++||++|
T Consensus 60 ~~~~~---~~~~~v~~~~~l~~~~~~~~~~-~~~~vv~~~~~~---------~------Gvvt~~di~~~ 110 (110)
T cd04609 60 REVMG---EPLPTVDPDAPIEELSELLDRG-NVAVVVDEGGKF---------V------GIITRADLLKY 110 (110)
T ss_pred HHHhc---CCCceeCCCCcHHHHHHHHHhC-CceeEEecCCeE---------E------EEEeHHHhhcC
Confidence 33333 2356799999999999999984 345555432111 1 19999999987
No 110
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.25 E-value=0.0015 Score=51.97 Aligned_cols=41 Identities=7% Similarity=-0.152 Sum_probs=38.1
Q ss_pred ceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 323 AIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 323 ~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.++.+..++.+++..+..++.+++=|+|++|...|+|+.+
T Consensus 63 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~ 103 (109)
T cd04606 63 VISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVD 103 (109)
T ss_pred CeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhH
Confidence 68899999999999999999999999999999999999864
No 111
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.25 E-value=0.00091 Score=70.42 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=79.9
Q ss_pred EEEecCCchhcHHHHHHhccccCceeEEEcC---CCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHH
Q 041297 184 LAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE---EGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLV 260 (379)
Q Consensus 184 ~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~---dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~ 260 (379)
..|++++++.+|++.|.+. ....+||||. +|+|+|-|+..||+.-. + +...|.++
T Consensus 108 ~tV~pd~tl~eAl~~m~~~--~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-------------~-----~~~~~V~d-- 165 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKT--GHSTVAVTEDGTAHGKLLGIVTSRDYRISR-------------M-----SLDTKVKD-- 165 (502)
T ss_pred CEeCCCCcHHHHHHHHHhc--CCCeEEEEeCCCcCCEEEEEEEcHHhhccc-------------c-----CCCCCHHH--
Confidence 4789999999999999875 4589999997 68999999988885300 0 00000000
Q ss_pred HHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHH
Q 041297 261 RLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQAL 340 (379)
Q Consensus 261 ~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAl 340 (379)
.| .....++++++..+|.+++..|.
T Consensus 166 -----------------IM--------------------------------------t~~~~~itv~~d~~l~eAl~lM~ 190 (502)
T PRK07107 166 -----------------FM--------------------------------------TPFEKLVTANEGTTLKEANDIIW 190 (502)
T ss_pred -----------------Hh--------------------------------------CCCCCeEEECCCCcHHHHHHHHH
Confidence 01 11234789999999999999999
Q ss_pred HcCCcEEEEeeCCCCcccceEeeh
Q 041297 341 ARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 341 aHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
.|+++++=|+|++|.++|+|+.+-
T Consensus 191 e~~i~~LPVVD~~g~LvGIIT~~D 214 (502)
T PRK07107 191 DHKLNTLPIVDKNGNLVYLVFRKD 214 (502)
T ss_pred HcCCCEEEEEcCCCeEEEEEEhHH
Confidence 999999999999999999998753
No 112
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.24 E-value=0.00081 Score=70.81 Aligned_cols=124 Identities=12% Similarity=0.090 Sum_probs=88.4
Q ss_pred CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297 168 PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLM 247 (379)
Q Consensus 168 p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~ 247 (379)
...++++ +.+++ +..++.+++..+|++.|++. +...++|+|++|+++|-++..||..- +
T Consensus 445 ~~~~V~d--im~~~-~~~v~~~~tl~ea~~~l~~~--~~~~~~VvD~~g~lvGiVt~~dL~~~-------l--------- 503 (574)
T PRK01862 445 RTTQMRE--LIQPA-QTVVPPTASVADMTRVFLEY--PVKYLYVVDDDGRFRGAVALKDITSD-------L--------- 503 (574)
T ss_pred hhCcHHH--HhcCC-CceeCCCCCHHHHHHHHHhC--CCceEEEEcCCCeEEEEEEHHHHHHH-------h---------
Confidence 3456666 45677 88899999999999999874 45789999999999999988877540 0
Q ss_pred hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297 248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY 327 (379)
Q Consensus 248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~ 327 (379)
.+.. +..+ . . . +|. -...+.+++
T Consensus 504 --~~~~--------------------------~~~~--~-~-------v-~di------------------m~~~~~~v~ 526 (574)
T PRK01862 504 --LDKR--------------------------DTTD--K-T-------A-ADY------------------AHTPFPLLT 526 (574)
T ss_pred --hccc--------------------------cccc--c-h-------H-HHh------------------ccCCCeeEC
Confidence 0000 0000 0 0 0 000 113357899
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEeeCC--CCcccceEeehhhHHH
Q 041297 328 PWSSLMAVIMQALARRDRLRSMAKAE--NPNFCPVRIQAKKQQL 369 (379)
Q Consensus 328 p~SSLvAVMaQAlaHRV~~vWVvd~e--~~l~~~v~~~~~~~~~ 369 (379)
+..+|.+++.++..|+.+++=|+|++ +.++|+|+-+.-.+.+
T Consensus 527 ~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 527 PDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred CCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence 99999999999999999999999987 4799999865544444
No 113
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.24 E-value=0.0017 Score=51.39 Aligned_cols=104 Identities=11% Similarity=0.045 Sum_probs=77.5
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+++..+|++.|.+. ..+.++|++.+|+++|-++..+|..+... ... .+. |
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~v~d~~~~~~G~v~~~dl~~~~~~----------~~~---~~~--~------- 58 (111)
T cd04626 3 FPTIDEDASIREALHEMLKY--NTNEIIVKDNEEKLKGVVTFTDILDLDLF----------ESF---LEK--K------- 58 (111)
T ss_pred ceEECCCccHHHHHHHHHHh--CCCeEEEEcCCCCEEEEEehHHhHHHHhh----------ccc---ccC--c-------
Confidence 77899999999999999764 45789999999999999988877542110 000 000 0
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
- .+. -.....++.+..+|.+++..+..|
T Consensus 59 -------------------------v---------~~~------------------~~~~~~~v~~~~~l~~~~~~~~~~ 86 (111)
T cd04626 59 -------------------------V---------FNI------------------VSQDVFYVNEEDTIDEALDIMREK 86 (111)
T ss_pred -------------------------H---------HHH------------------hcCCcEEEcCCCcHHHHHHHHHHc
Confidence 0 000 113357899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
...++=|+|+ |.++|+|+.+
T Consensus 87 ~~~~~~Vv~~-~~~~G~it~~ 106 (111)
T cd04626 87 QIGRLPVVDD-NKLIGVVRTK 106 (111)
T ss_pred CCCeeeEeEC-CEEEEEEEhH
Confidence 9999999998 8999999864
No 114
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.24 E-value=0.0027 Score=49.71 Aligned_cols=101 Identities=23% Similarity=0.234 Sum_probs=77.6
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..+..+++..+|+..|.+. ....++|+|.+|+++|-++..+|..+. +.+.|.++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~--~~~~~~v~d~~~~~~G~v~~~dl~~~~-------------------~~~~~v~~---- 58 (109)
T cd04583 4 PVTITPDRTLAEAIKLMRDK--KVDSLLVVDKDNKLLGIVSLESLEQAY-------------------KEAKSLED---- 58 (109)
T ss_pred CEEECCCCCHHHHHHHHHHC--CCceEEEEcCCCcEEEEEEHHHHHHHh-------------------hcCCcHhH----
Confidence 67789999999999999764 447899999999999999988875521 00000000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. -.....++.+..++.+++..+..+
T Consensus 59 -------------------------~------------------------------~~~~~~~v~~~~~~~~~~~~~~~~ 83 (109)
T cd04583 59 -------------------------I------------------------------MLEDVFTVQPDASLRDVLGLVLKR 83 (109)
T ss_pred -------------------------h------------------------------hcCCceEECCCCcHHHHHHHHHHc
Confidence 0 012357889999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|++|.++|+|+.+
T Consensus 84 ~~~~~~vv~~~g~~~Gvit~~ 104 (109)
T cd04583 84 GPKYVPVVDEDGKLVGLITRS 104 (109)
T ss_pred CCceeeEECCCCeEEEEEehH
Confidence 999999999999999999754
No 115
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.23 E-value=0.0012 Score=68.74 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=82.9
Q ss_pred CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297 180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL 259 (379)
Q Consensus 180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l 259 (379)
++ +..++.+++..+|+++|++. ..+.+||||.+|+++|-++..||.... +...|.+
T Consensus 95 ~~-~v~i~~~~tv~ea~~~m~~~--~~~~lpVvd~~g~lvGiVt~~DL~~~~-------------------~~~~~V~-- 150 (486)
T PRK05567 95 TD-PVTVTPDTTLAEALALMARY--GISGVPVVDENGKLVGIITNRDVRFET-------------------DLSQPVS-- 150 (486)
T ss_pred CC-CeEeCCCCCHHHHHHHHHHh--CCCEEEEEccCCEEEEEEEHHHhhhcc-------------------cCCCcHH--
Confidence 56 88999999999999999875 458999999999999999988874310 0000000
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297 260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA 339 (379)
Q Consensus 260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA 339 (379)
+. -.+..+++|.+..||.+++..+
T Consensus 151 ---------------------------------------di-----------------m~~~~~v~v~~~~sl~eal~~m 174 (486)
T PRK05567 151 ---------------------------------------EV-----------------MTKERLVTVPEGTTLEEALELL 174 (486)
T ss_pred ---------------------------------------HH-----------------cCCCCCEEECCCCCHHHHHHHH
Confidence 00 0123578999999999999999
Q ss_pred HHcCCcEEEEeeCCCCcccceEeeh
Q 041297 340 LARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 340 laHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
..|+++++-|+|++|.++|+|+...
T Consensus 175 ~~~~~~~lpVVDe~g~lvGiIT~~D 199 (486)
T PRK05567 175 HEHRIEKLPVVDDNGRLKGLITVKD 199 (486)
T ss_pred HHcCCCEEEEEcCCCcEEEEEEhHH
Confidence 9999999999999999999998653
No 116
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.22 E-value=0.00094 Score=65.36 Aligned_cols=108 Identities=13% Similarity=0.048 Sum_probs=84.3
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc------ccc
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP------CFC 88 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~------VS~ 88 (379)
+-.++....|++++++.+.+++...+||.+.+ ..+++|+|..-|++.++.. +.+
T Consensus 78 ~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~--------------------~d~iiGiv~~kDll~~~~~~~~~~~l~~ 137 (292)
T PRK15094 78 QMITLKRNQTLDECLDVIIESAHSRFPVISED--------------------KDHIEGILMAKDLLPFMRSDAEAFSMDK 137 (292)
T ss_pred HEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC--------------------CCcEEEEEEHHHHHhHhhccCCcCCHHH
Confidence 55678889999999999999999999998732 2469999999999876542 334
Q ss_pred cccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297 89 SFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI 161 (379)
Q Consensus 89 li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i 161 (379)
+.. . ...|.++++|.++++.|. ++.|.++|+++...- .. ++|.+||++.|.+-|
T Consensus 138 l~r---~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~v---------iG------iVTleDIle~ivGei 192 (292)
T PRK15094 138 VLR---Q-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGV---------SG------LVTIEDILELIVGEI 192 (292)
T ss_pred HcC---C-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCE---------EE------EeEHHHHHHHHhCCC
Confidence 432 2 237999999999999999 678888888752211 11 999999999999865
No 117
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.21 E-value=0.003 Score=64.54 Aligned_cols=142 Identities=12% Similarity=0.028 Sum_probs=102.3
Q ss_pred ccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc----cccc
Q 041297 14 CDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP----CFCS 89 (379)
Q Consensus 14 ~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~----VS~l 89 (379)
-|=++++...|++++++.+++++.+-+||++-+ ..+++|+|..-|++.++.+ +.++
T Consensus 201 ~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~--------------------~d~ivGiv~~kDll~~~~~~~~~l~~~ 260 (408)
T TIGR03520 201 LDIFALDIETSFSEIIPKIIENGYSRIPVYKET--------------------IDNITGVLYIKDLLPHLNKKNFDWQSL 260 (408)
T ss_pred HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC--------------------CCceEEEEEHHHHHhHhccCCCCHHHH
Confidence 455678888999999999999999999998732 2469999999999877653 3333
Q ss_pred ccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-ccCCC
Q 041297 90 FAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-LLNPT 167 (379)
Q Consensus 90 i~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-~l~p~ 167 (379)
+. ....|.+++++.++++.|. ++.|.++|+++...- .. .+|.|||++.+.+-|. +..+
T Consensus 261 ~~----~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~---------~G------iVT~eDileeivgei~de~d~- 320 (408)
T TIGR03520 261 LR----EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGT---------SG------LVTLEDIIEEIVGDISDEFDD- 320 (408)
T ss_pred cC----CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCE---------EE------EEEHHHHHHHHhCCCCCcCCc-
Confidence 32 2578999999999999999 567888888753211 11 9999999999988654 2221
Q ss_pred CCCcccccccccCCcEEEEecCCchhcHHHHH
Q 041297 168 PNQPINSHNIIDDAGILAIHYDDPAAFAIPLI 199 (379)
Q Consensus 168 p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm 199 (379)
....+.. ++++ .+-|+...+.-+.-+.|
T Consensus 321 ~~~~i~~---~~~~-~~~v~G~~~l~~l~~~l 348 (408)
T TIGR03520 321 EDLIYSK---IDDN-NYVFEGKTSLKDFYKIL 348 (408)
T ss_pred CccceEE---eCCC-eEEEEeccCHHHHHHHh
Confidence 1111222 3345 78888888876655555
No 118
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.19 E-value=0.0023 Score=50.56 Aligned_cols=106 Identities=10% Similarity=0.132 Sum_probs=76.2
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..+..+++..+|++.|.+. ....++|++. |+++|-++..+|.. ...+ .++ + ++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~-~~~~G~v~~~dl~~-------~~~~---~~~----~----~~----- 56 (113)
T cd04587 3 PATVSPTTTVQEAAKLMREK--RVSCVLVMDG-NKLVGIFTSKDIAL-------RVVA---QGL----D----PE----- 56 (113)
T ss_pred CeEeCCCCCHHHHHHHHHHc--CCCeEEEEEC-CEEEEEEEhHHHHH-------HHHh---cCC----C----cC-----
Confidence 77899999999999998654 3468999997 99999998888742 0000 000 0 00
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. . . . .+. -...+.++.+..+|..+|..+..+
T Consensus 57 -------------------~---~-~-------v-~~i------------------~~~~~~~v~~~~~l~~~~~~~~~~ 87 (113)
T cd04587 57 -------------------S---T-L-------V-ERV------------------MTPNPVCATSDTPVLEALHLMVQG 87 (113)
T ss_pred -------------------c---C-C-------H-HHh------------------cCCCCeEEcCCCCHHHHHHHHHHc
Confidence 0 0 0 0 000 112357899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|++|.++|+|+.+
T Consensus 88 ~~~~l~Vv~~~~~~~Gvvs~~ 108 (113)
T cd04587 88 KFRHLPVVDKSGQVVGLLDVT 108 (113)
T ss_pred CCCcccEECCCCCEEEEEEHH
Confidence 999999999999999999864
No 119
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.18 E-value=0.002 Score=67.60 Aligned_cols=105 Identities=19% Similarity=0.223 Sum_probs=83.6
Q ss_pred ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297 178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK 257 (379)
Q Consensus 178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe 257 (379)
+.++ +..+..+++..+|+++|++. ..+.++|||.+|+++|-++..||...+. ..|.+
T Consensus 95 Mi~~-pvtv~~d~tv~eA~~~m~~~--~~s~l~VVD~~gklvGIVT~rDL~~~~~--------------------~~~V~ 151 (479)
T PRK07807 95 VFDT-PVTLSPDDTVGDALALLPKR--AHGAVVVVDEEGRPVGVVTEADCAGVDR--------------------FTQVR 151 (479)
T ss_pred cccC-CeEECCCCCHHHHHHHHHhc--CCceEEEECCCCeEEEEEeHHHHhcCcc--------------------CCCHH
Confidence 4566 78999999999999999875 4589999999999999999888854210 00000
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297 258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM 337 (379)
Q Consensus 258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa 337 (379)
++ -+..+++..+..+|.+++.
T Consensus 152 di-----------------------------------------------------------Mt~~~itV~~d~sL~eAl~ 172 (479)
T PRK07807 152 DV-----------------------------------------------------------MSTDLVTLPAGTDPREAFD 172 (479)
T ss_pred Hh-----------------------------------------------------------ccCCceEECCCCcHHHHHH
Confidence 00 0134688999999999999
Q ss_pred HHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 338 QALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 338 QAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
.+..|+.+++=|+|++|.++|+|+.+-
T Consensus 173 lM~~~~i~~LPVVD~~g~lvGIIT~~D 199 (479)
T PRK07807 173 LLEAARVKLAPVVDADGRLVGVLTRTG 199 (479)
T ss_pred HHHhcCCCEEEEEcCCCeEEEEEEHHH
Confidence 999999999999999999999998653
No 120
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.17 E-value=0.0016 Score=55.06 Aligned_cols=100 Identities=11% Similarity=0.147 Sum_probs=75.5
Q ss_pred cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----------
Q 041297 17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP----------- 85 (379)
Q Consensus 17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~----------- 85 (379)
.++....|+.+|++.+.+++...+||=+- .++++|+|+.-|++.++..
T Consensus 4 ~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---------------------~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~ 62 (135)
T cd04621 4 ATVHPEHSLLHVVDEMEKNGVGRVIVVDD---------------------NGKPVGVITYRDLAFAEFEDNERGLPKKSI 62 (135)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCcceEECC---------------------CCCEEEEEeHHHHHHHhhcccccccchhhh
Confidence 45677889999999999988888888863 2579999999998876531
Q ss_pred --------------------ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcc
Q 041297 86 --------------------CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSE 144 (379)
Q Consensus 86 --------------------VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~ 144 (379)
|+++.. ..+..++|++++.++++.|. ++.++++|++++ +-
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-~~--------------- 123 (135)
T cd04621 63 KMKRKAGQKRYRYVKEVPLVAEDIMT---EEIITVSPNDDVVDAAKLMLEANISGLPVVDND-NI--------------- 123 (135)
T ss_pred hhhhhcccccccccccccccHHHhcC---CCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCC-EE---------------
Confidence 333332 23578999999999999997 678888888752 11
Q ss_pred eEEeeHHHHHHH
Q 041297 145 YCWLTQEDLIRY 156 (379)
Q Consensus 145 yC~LTQeDVvRF 156 (379)
.=++|+.||+++
T Consensus 124 ~Gvit~~di~~~ 135 (135)
T cd04621 124 VGVITKTDICRE 135 (135)
T ss_pred EEEEEHHHHhhC
Confidence 118999998863
No 121
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.15 E-value=0.0025 Score=50.99 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=76.7
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..+..+++..+|++.|.+. ..+.++|+|.+|+++|-++..+|..+... + +.+.
T Consensus 3 ~~~~~~~~~l~~a~~~~~~~--~~~~~~V~d~~~~~~G~v~~~~l~~~~~~-------~-------~~~~---------- 56 (121)
T cd04584 3 VVTITPTTTIAEALELMREH--KIRHLPVVDEEGRLVGIVTDRDLRDASPS-------P-------FTTL---------- 56 (121)
T ss_pred CEEECCCCCHHHHHHHHHHc--CCCcccEECCCCcEEEEEEHHHHHHHhhh-------h-------cccc----------
Confidence 67788999999999999775 34789999999999999998777542110 0 0000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
+...+ ... .. . . ...--...+++-.+..+|..++..+..+
T Consensus 57 --------~~~~~-~~~-~~-----~----------------~---------v~~~~~~~~~~i~~~~~l~~~~~~~~~~ 96 (121)
T cd04584 57 --------SEHEL-YLL-LK-----M----------------P---------VKEIMTKDVITVHPLDTVEEAALLMREH 96 (121)
T ss_pred --------hhhhh-hhh-cC-----c----------------C---------HHHHhhCCCeEECCCCcHHHHHHHHHHc
Confidence 00000 000 00 0 0 0000112356778899999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++.|+|. |.++|+|+..
T Consensus 97 ~~~~~~V~~~-~~~~Gvv~~~ 116 (121)
T cd04584 97 RIGCLPVVED-GRLVGIITET 116 (121)
T ss_pred CCCeEEEeeC-CEEEEEEEHH
Confidence 9999999998 8999999854
No 122
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.15 E-value=0.0035 Score=50.49 Aligned_cols=115 Identities=13% Similarity=0.134 Sum_probs=77.6
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..+..++++.+|++.|.+. ....++|+|. |+++|-++..+|..+-.. +....+. +.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~V~d~-~~~~G~v~~~~l~~~~~~------------~~~~~~~--~~~~~--- 62 (122)
T cd04637 3 VVTVEMDDRLEEVREIFEKH--KFHHLLVVED-NELVGVISDRDYLKAISP------------FLGTAGE--TEKDL--- 62 (122)
T ss_pred ceEeCCCCCHHHHHHHHHhC--CCCEEEEEeC-CeEEEEEEHHHHHHHHHH------------Hhccccc--hHHHH---
Confidence 77899999999999999764 3378999997 999999997777542100 0000000 00000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. ... ... .+ . -...++++.+..++.+++..+..|
T Consensus 63 ----------~----~~~-----~~~---------~~---------------~---~~~~~~~v~~~~~l~~~~~~~~~~ 96 (122)
T cd04637 63 ----------A----TLN-----RRA---------HQ---------------I---MTRDPITVSPDTPVDEASKLLLEN 96 (122)
T ss_pred ----------H----HHH-----hHH---------HH---------------h---hcCCCeeeCCCCcHHHHHHHHHHc
Confidence 0 000 000 00 0 113368899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|++|.++|+++..
T Consensus 97 ~~~~~~vv~~~~~~~Gvit~~ 117 (122)
T cd04637 97 SISCLPVVDENGQLIGIITWK 117 (122)
T ss_pred CCCeEeEECCCCCEEEEEEHH
Confidence 999999999999999999853
No 123
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.15 E-value=0.0013 Score=69.22 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=85.4
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL 164 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l 164 (379)
|+++..+. ...++|++++-|+++.|. ++.+.+.|+++.-+- .=++|.+|+.+.+...-
T Consensus 449 V~dim~~~---~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~l---------------vGiVt~~dL~~~l~~~~--- 507 (574)
T PRK01862 449 MRELIQPA---QTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRF---------------RGAVALKDITSDLLDKR--- 507 (574)
T ss_pred HHHHhcCC---CceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeE---------------EEEEEHHHHHHHhhccc---
Confidence 66765432 456899999999999998 578888887642211 01899999998765421
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC--CcEEeeeCccccC
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE--GRLVGDISPFSLN 228 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d--GkLIGeISa~~L~ 228 (379)
.....++.+ +.+++ +..++.+++..+|++.|.+. +...+||||++ |+++|-|+..|+-
T Consensus 508 -~~~~~~v~d--im~~~-~~~v~~d~~L~~al~~m~~~--~~~~lpVVd~~~~~~liGvIt~~DIl 567 (574)
T PRK01862 508 -DTTDKTAAD--YAHTP-FPLLTPDMPLGDALEHFMAF--QGERLPVVESEASPTLAGVVYKTSLL 567 (574)
T ss_pred -ccccchHHH--hccCC-CeeECCCCCHHHHHHHHHhc--CCCeeeeEeCCCCCeEEEEEEHHHHH
Confidence 112234554 35677 88999999999999999885 44789999987 4899999988874
No 124
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.11 E-value=0.0018 Score=68.20 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=81.7
Q ss_pred EEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccc
Q 041297 98 RHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHN 176 (379)
Q Consensus 98 ~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG 176 (379)
..+.|+++|-||+++|. ++...++|+++...+ ..=.=.+|..|+.+ .. ..+..+|+++=
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~------------gkLvGIVT~~DLr~-~~-------~~~~~~V~dIM 167 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAH------------GKLLGIVTSRDYRI-SR-------MSLDTKVKDFM 167 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcC------------CEEEEEEEcHHhhc-cc-------cCCCCCHHHHh
Confidence 48999999999999999 567777777652111 00011889999843 21 13456677643
Q ss_pred cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCC
Q 041297 177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSC 230 (379)
Q Consensus 177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~C 230 (379)
--+++ +..+++++++.+|+++|.+. +...+||||.+|+|+|=|+..||...
T Consensus 168 t~~~~-~itv~~d~~l~eAl~lM~e~--~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 168 TPFEK-LVTANEGTTLKEANDIIWDH--KLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCCC-eEEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 22246 99999999999999999986 56999999999999999999998554
No 125
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.11 E-value=0.0021 Score=51.00 Aligned_cols=109 Identities=13% Similarity=0.161 Sum_probs=74.9
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+++..+|++.|++. ....++|+|.+|+++|-++..+|..+... . +...+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~V~d~~~~~~Giv~~~dl~~~~~~-------~-------------~~~~~--- 57 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKH--GYSAIPVLDKEGKYVGTISLTDILWKLKG-------L-------------ENLDL--- 57 (116)
T ss_pred cEEECCCCcHHHHHHHHHHC--CCceeeeECCCCcEEEEEeHHHHHHHhhc-------c-------------CchhH---
Confidence 78899999999999999764 34789999999999999988887542210 0 00000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. . +.+ . . . .+ --+..+.++.+..+|.+++..+..+
T Consensus 58 ----------~---~-~~~----~-~-------v-~~------------------~~~~~~~~v~~~~~l~~a~~~~~~~ 92 (116)
T cd04643 58 ----------E---R-LVD----L-K-------V-ID------------------VMNTDVPVIIDDADIEEILHLLIDQ 92 (116)
T ss_pred ----------H---H-HhC----C-c-------H-HH------------------HhcCCCceecCCCCHHHHHHHHhcC
Confidence 0 0 000 0 0 0 00 0112367888999999999999887
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+ .+=|+|++|.+.|+++..
T Consensus 93 ~--~~~Vv~~~~~~~Gvit~~ 111 (116)
T cd04643 93 P--FLPVVDDDGIFIGIITRR 111 (116)
T ss_pred C--ceeEEeCCCeEEEEEEHH
Confidence 6 466899999999999853
No 126
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.10 E-value=0.0034 Score=50.61 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=76.9
Q ss_pred CceEEeCCCCchhHHHHHHhcC-ccEEEEecCCcccCCCCCCcccccCCcceE-EeeHHHHHHHHHhhhcccCCCCCCcc
Q 041297 95 GIVRHLKPSASLLEAVDLLLGG-VQNLVILPAGIKLQPKPSLKSTFHNDSEYC-WLTQEDLIRYFLNFIGLLNPTPNQPI 172 (379)
Q Consensus 95 gll~~V~P~tsLLdAie~m~~G-~~rllVi~s~~k~~~~~s~~~~~~~~~~yC-~LTQeDVvRFLl~~ig~l~p~p~~SI 172 (379)
.++..++|++++-++++.|.+. ..++.|+++..- ..+|+ .+|..|+.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-------------~~~~~G~v~~~dl~~~~~~------------- 55 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEE-------------SPRLVGYILRSQLVVALKN------------- 55 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCCC-------------CCEEEEEEeHHHHHHHHHH-------------
Confidence 3567889999999999999864 667766654210 11222 8999999988765
Q ss_pred cccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 173 NSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 173 ~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+..++ +..++.+++..+++++|++. +...+||+ .+|+++|=++-.+|.
T Consensus 56 ----~m~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~pVv-~~~~~~Gvvt~~dl~ 103 (105)
T cd04591 56 ----YIDPS-PFTVSPRTSLEKVHQLFRKL--GLRHLLVV-DEGRLVGIITRKDLL 103 (105)
T ss_pred ----hccCC-CceECCCCcHHHHHHHHHHc--CCCEEEEE-ECCeEEEEEEhhhhh
Confidence 55566 88999999999999999875 44788998 588999999887763
No 127
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.10 E-value=0.0054 Score=48.50 Aligned_cols=104 Identities=17% Similarity=0.190 Sum_probs=75.5
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+++..+|++.|.+. ....++|++.+|+++|-++..+|.. + +..+..+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~v~d~~~~~~G~v~~~~l~~-------~------------~~~~~~~------ 55 (112)
T cd04624 3 VVTVDPDTSIREAAKLMAEE--NVGSVVVVDPDERPIGIVTERDIVR-------A------------VAAGIDL------ 55 (112)
T ss_pred CeEECCCCcHHHHHHHHHHc--CCCEEEEECCCCCEEEEeeHHHHHH-------H------------HhccCCC------
Confidence 67889999999999999764 3478999999999999997666532 0 0000000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. + . . .+ . -.....+|.+..++..++.++..+
T Consensus 56 -------------------~---~-~-------v-~~---------------~---~~~~~~~v~~~~~~~~~~~~~~~~ 86 (112)
T cd04624 56 -------------------D---T-P-------V-SE---------------I---MTRDLVTVDPDEPVAEAAKLMRKN 86 (112)
T ss_pred -------------------c---c-C-------H-HH---------------h---ccCCCEEECCCCcHHHHHHHHHHc
Confidence 0 0 0 0 00 0 012367899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEe
Q 041297 343 RDRLRSMAKAENPNFCPVRI 362 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~ 362 (379)
+.+.+=|+|++|.+.|+++.
T Consensus 87 ~~~~~~Vv~~~g~~~Gilt~ 106 (112)
T cd04624 87 NIRHHLVVDKGGELVGVISI 106 (112)
T ss_pred CccEEEEEcCCCcEEEEEEH
Confidence 99999999999999999875
No 128
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.08 E-value=0.0034 Score=53.15 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=78.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-------ccCCC-
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-------LLNPT- 167 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-------~l~p~- 167 (379)
+..+.+++++.|+++.|. .+...++|+++ .+ . .=|+|..|+.+++..... .....
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~--------~------~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 66 (143)
T cd04634 3 PITCNADDTISDAARLLRENKISGAPVLDG--GK--------L------VGIVSESDILKLLVTHDPSGNLWLPSPLELI 66 (143)
T ss_pred cEEecCCCCHHHHHHHHHHcCCCcceEeEC--Ce--------E------EEEecHHHHHHHHHhccCccccccCCcceee
Confidence 357899999999999998 57888888764 22 0 118999999998865331 00000
Q ss_pred --------------------CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 168 --------------------PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 168 --------------------p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
+..++.+ +.+++ +..++.+++..+|+..|.+. +...++|++. |+++|=++..+|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~-~~~v~~~~~l~~a~~~~~~~--~~~~~~Vv~~-~~~~Gvvt~~dl 140 (143)
T cd04634 67 ELPLREFINWEETKRALTDAGKMKVRD--IMTKK-VITISPDASIEDAAELMVRH--KIKRLPVVED-GRLVGIVTRGDI 140 (143)
T ss_pred eccchheeehHHHHHHHHHHhcCCHHH--HcCCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEEEC-CEEEEEEEHHHh
Confidence 1222322 23556 88999999999999999875 3367999988 999999988776
Q ss_pred C
Q 041297 228 N 228 (379)
Q Consensus 228 ~ 228 (379)
-
T Consensus 141 ~ 141 (143)
T cd04634 141 I 141 (143)
T ss_pred h
Confidence 3
No 129
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.08 E-value=0.0028 Score=50.20 Aligned_cols=100 Identities=9% Similarity=0.048 Sum_probs=75.5
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-ccccccCC
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-CFCSFAKD 93 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-VS~li~~~ 93 (379)
.++.+....|+++|++.+.+.+...+||-+. ++++|+|+.-|+...... +.++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----------------------~~~~G~v~~~~l~~~~~~~~~~~~~-- 57 (104)
T cd04594 2 KDIKVKDYDKVYEAKRIMIENDLLSLPVVDY----------------------NKFLGAVYLKDIENATYGDVVDYIV-- 57 (104)
T ss_pred CceEECCCCCHHHHHHHHHHcCCcEEEEEEC----------------------CEEEEEEEHHHHhhhcccchhhhhh--
Confidence 3678889999999999999888888888762 368999999998764321 444332
Q ss_pred CCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHH
Q 041297 94 SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIR 155 (379)
Q Consensus 94 ~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvR 155 (379)
.....++++.++.|+++.|. .+...++|+++ .+ -..++|+.|+++
T Consensus 58 -~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~--------------~iGvit~~dl~~ 103 (104)
T cd04594 58 -RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD--GK--------------FKGIVTLDSILD 103 (104)
T ss_pred -cCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC--CE--------------EEEEEEHHHhhc
Confidence 23568999999999999998 67888888752 11 134888888764
No 130
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.08 E-value=0.0051 Score=49.00 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=76.0
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
.+.++.+++..+|++.|.+. ....++|++.+|+++|-++..++... + .... .++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~--~~~~~~v~d~~~~~~G~v~~~dl~~~-------~-----------~~~~-~~~----- 57 (113)
T cd04607 4 QLLVSPDASILDALRKIDKN--ALRIVLVVDENGRLLGTVTDGDIRRA-------L-----------LKGL-SLD----- 57 (113)
T ss_pred ceEECCCCCHHHHHHHHHhc--CcCEEEEECCCCCEEEEEEcHHHHHH-------H-----------hcCC-CcC-----
Confidence 45688999999999999765 44688999999999999987765320 0 0000 000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
+ . . .+. -+....++.+..+|.+++..+..+
T Consensus 58 -----------------------~-~-------v-~~~------------------~~~~~~~v~~~~~l~~~~~~~~~~ 87 (113)
T cd04607 58 -----------------------D-P-------V-SEV------------------MNRNPITAKVGSSREEILALMRER 87 (113)
T ss_pred -----------------------C-C-------H-HHh------------------hcCCCEEEcCCCCHHHHHHHHHHC
Confidence 0 0 0 000 012256899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|++|.++|+|+.+
T Consensus 88 ~~~~~~Vv~~~~~~~Gvit~~ 108 (113)
T cd04607 88 SIRHLPILDEEGRVVGLATLD 108 (113)
T ss_pred CCCEEEEECCCCCEEEEEEhH
Confidence 999999999999999999854
No 131
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.08 E-value=0.0029 Score=66.07 Aligned_cols=204 Identities=16% Similarity=0.154 Sum_probs=112.2
Q ss_pred HHHHHhhhcccCCCCC----CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 154 IRYFLNFIGLLNPTPN----QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 154 vRFLl~~ig~l~p~p~----~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
.+|+++.++.-.|... .++.++ ..++ +..++.+++..+|+++|++. +...+||||.+|+++|-|+..+|..
T Consensus 48 ~e~vl~~~~~~~p~ll~~~~~~V~di--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~l~Givt~~di~~ 122 (546)
T PRK14869 48 TKFVLDYFGVEAPELIEDVKPQVRDL--EIDK-PVTVSPDTSLKEAWNLMDEN--NVKTLPVVDEEGKLLGLVSLSDLAR 122 (546)
T ss_pred HHHHHHHhCCCchhhhhccCCcHHHh--cCCC-CcEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCEEEEEEEHHHHHH
Confidence 4678887776655543 345553 3566 99999999999999999875 4589999999999999999998865
Q ss_pred CcHH----HHHHHHhcchhhhhhhhccCC---Chhh------------HHHHHHHHhhhh-----hh--hhhhhhhhccc
Q 041297 230 CDET----VAAAIATLLAGDLMAYMDCGR---PLKD------------LVRLVKQRLDEK-----NM--VGLLELMEDDL 283 (379)
Q Consensus 230 CDet----~a~A~atLSAgdf~a~vd~~~---ppe~------------l~~~v~~~l~~k-----~l--~~~~~l~~~~~ 283 (379)
.-.. ...+.+.-+..++...+++.- +++. ....+.+++++. |- +..+..++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~ 202 (546)
T PRK14869 123 AYMDILDPEILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGV 202 (546)
T ss_pred HHHhhcchhhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCC
Confidence 3211 112222333344444443310 1110 001112222221 00 00011111111
Q ss_pred c---c-cCCCCCCCC---CCcccccccc----C--CcCCCC--CCcccc-cCCccceeecCCCcHHHHHHHHHHcCCcEE
Q 041297 284 E---I-SSGSCSNSS---SSDEESSTGS----A--RSARSG--GYSARV-VHRSEAIVCYPWSSLMAVIMQALARRDRLR 347 (379)
Q Consensus 284 ~---~-ss~~~ssss---ssDee~~~g~----~--~~~r~~--~~S~~~-~~~~~~vtC~p~SSLvAVMaQAlaHRV~~v 347 (379)
+ + ...+.+ .. -.++...+.- . ...|.. +.+... ..+..++++.+..++.++...+..++.+++
T Consensus 203 ~~lIlt~g~~~~-~~v~~la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 281 (546)
T PRK14869 203 RLLIITGGAPVS-EDVLELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSY 281 (546)
T ss_pred CEEEECCCCCCC-HHHHHHHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCce
Confidence 1 0 000000 00 0000000000 0 000100 111111 122568999999999999999999999999
Q ss_pred EEeeCCCCcccceEee
Q 041297 348 SMAKAENPNFCPVRIQ 363 (379)
Q Consensus 348 WVvd~e~~l~~~v~~~ 363 (379)
=|+|++|.++|+|+..
T Consensus 282 PVvd~~g~lvGiit~~ 297 (546)
T PRK14869 282 PVVDEDGKVVGVISRY 297 (546)
T ss_pred EEEcCCCCEEEEEEHH
Confidence 9999999999999953
No 132
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.07 E-value=0.0022 Score=51.52 Aligned_cols=103 Identities=12% Similarity=0.157 Sum_probs=74.0
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcC---CCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE---EGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL 259 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~---dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l 259 (379)
+..+..+++..+|++.|++. ....++|+|. +|+++|-++..++..... ...|.+++
T Consensus 4 ~~~i~~~~~~~~~~~~~~~~--~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-------------------~~~~v~~~ 62 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKK--GFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-------------------SETPLSEV 62 (114)
T ss_pred CeEcCCCCCHHHHHHHHHHc--CCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-------------------cCCCHHHh
Confidence 67788999999999999764 4468899997 789999998766632100 00000000
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297 260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA 339 (379)
Q Consensus 260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA 339 (379)
+ +.....+.+.+..+|.+++..+
T Consensus 63 -------------------~--------------------------------------~~~~~~~~~~~~~~l~~~l~~~ 85 (114)
T cd04602 63 -------------------M--------------------------------------TPREVLVVAPTGITLEEANEIL 85 (114)
T ss_pred -------------------c--------------------------------------CCCceEEECCCCCCHHHHHHHH
Confidence 0 0111134445599999999999
Q ss_pred HHcCCcEEEEeeCCCCcccceEee
Q 041297 340 LARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 340 laHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
..++.+++=|+|++|.++|+|..+
T Consensus 86 ~~~~~~~~pVv~~~~~~~Gvit~~ 109 (114)
T cd04602 86 RESKKGKLPIVNDDGELVALVTRS 109 (114)
T ss_pred HhcCCCceeEECCCCeEEEEEEHH
Confidence 999999999999999999999854
No 133
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.07 E-value=0.002 Score=51.00 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=75.7
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+.+..+|++.|.+. ....++|+|. |+++|-+...+|..+.+. ++ ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~V~d~-~~~~G~v~~~dl~~~~~~-----------~~----~~---------- 55 (110)
T cd04595 4 VKTVRPEATIEEARELLLRY--GHTALPVVEG-GRVVGIISRRDVEKALRH-----------GL----GH---------- 55 (110)
T ss_pred ceEeCCCCcHHHHHHHHHHc--CCCeeeEeeC-CEEEEEEEHHHHHHHHhc-----------cc----cc----------
Confidence 77889999999999999764 3468999998 999999987776442100 00 00
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. . . .+. -...++++.+..++.+++..+..+
T Consensus 56 -----------------------~-~-------~-~~~------------------~~~~~~~v~~~~~l~~~~~~~~~~ 85 (110)
T cd04595 56 -----------------------A-P-------V-KDY------------------MSTDVVTVPPDTPLSEVQELMVEH 85 (110)
T ss_pred -----------------------C-c-------H-HHH------------------hcCCCEEECCCCcHHHHHHHHHHc
Confidence 0 0 0 000 112467899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
..+++=|+| +|...|+|+.+
T Consensus 86 ~~~~~~V~~-~~~~~Gvvt~~ 105 (110)
T cd04595 86 DIGRVPVVE-DGRLVGIVTRT 105 (110)
T ss_pred CCCeeEEEe-CCEEEEEEEhH
Confidence 999999999 89999999864
No 134
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.05 E-value=0.0021 Score=50.88 Aligned_cols=98 Identities=11% Similarity=0.142 Sum_probs=71.4
Q ss_pred ccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecc---------cccc
Q 041297 18 ALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC---------PCFC 88 (379)
Q Consensus 18 ~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la---------~VS~ 88 (379)
++....|+.+|++.+.+++...++|-+ .++++|+|+--|+.-++. .+++
T Consensus 5 ~v~~~~~~~~~~~~~~~~~~~~~~v~~----------------------~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~ 62 (112)
T cd04625 5 TVAPETLLSEAVATMAEQDLGSLVVME----------------------RGELVGLLTFREVLQAMAQHGAGVLDTTVRA 62 (112)
T ss_pred EECCCCcHHHHHHHHHHcCCCeEEEee----------------------CCEEEEEEEHHHHHHHHHhcCCchhcCCHHH
Confidence 456778999999999877765555543 257999999999875442 1555
Q ss_pred cccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297 89 SFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 156 (379)
Q Consensus 89 li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF 156 (379)
+.. .....+++++++.+|++.|. .+..+++|++++ +- .=++|+.|+++|
T Consensus 63 ~~~---~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~-~~---------------~Gvvt~~dl~~~ 112 (112)
T cd04625 63 IMN---PEPIVASPDDSIDEVRRLMVERHLRYLPVLDGG-TL---------------LGVISFHDVAKA 112 (112)
T ss_pred HhC---CCCeEECCCCCHHHHHHHHHHcCCCeeeEEECC-EE---------------EEEEEHHHhhcC
Confidence 543 23567999999999999998 689999998631 11 118899998874
No 135
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.04 E-value=0.0028 Score=50.00 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=65.6
Q ss_pred cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc------ccccc
Q 041297 17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP------CFCSF 90 (379)
Q Consensus 17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~------VS~li 90 (379)
+.+....|+++|++.+.+++...++|-+. ++++|+|+.-|++-.... ++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----------------------~~~~G~v~~~~l~~~~~~~~~~~~v~~~~ 61 (110)
T cd04588 4 ITLNPNATLREAARLFNTHHIHGAPVVDD----------------------GKLVGIVTLSDIAHAIARGLELAKVKDVM 61 (110)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEeeC----------------------CEEEEEEEHHHHHHHHhccccccCHHHHh
Confidence 34567789999999999888888888772 369999999998865442 44443
Q ss_pred cCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecC
Q 041297 91 AKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPA 125 (379)
Q Consensus 91 ~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s 125 (379)
. .....++|++++.|+++.|. .+.+.++|++.
T Consensus 62 ~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~ 94 (110)
T cd04588 62 T---KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD 94 (110)
T ss_pred c---CCceEECCCCCHHHHHHHHHhcCCCEEEEECC
Confidence 2 34678999999999999998 67888888764
No 136
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.03 E-value=0.0024 Score=65.94 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=82.3
Q ss_pred CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC---CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCCh
Q 041297 180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE---GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPL 256 (379)
Q Consensus 180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d---GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~pp 256 (379)
++ +..++.++++.+|+++|++. ..+.+||+|.+ |+++|-++..||.... +...|.
T Consensus 88 ~~-~vtl~~~~tv~eal~~m~~~--~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-------------------~~~~~V 145 (450)
T TIGR01302 88 SD-PVTISPETTVADVLELMERK--GISGIPVVEDGDMTGKLVGIITKRDIRFVK-------------------DKGKPV 145 (450)
T ss_pred cC-ceEeCCCCCHHHHHHHHHHc--CCCEEEEEeCCCCCCeEEEEEEHHHHhhhh-------------------cCCCCH
Confidence 46 88999999999999999875 55899999998 8999999987774200 000000
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHH
Q 041297 257 KDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVI 336 (379)
Q Consensus 257 e~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVM 336 (379)
++. + ++.+++++.+..+|..++
T Consensus 146 -----------------------------------------~dv----------------m-~~~~~~~V~~~~sl~eal 167 (450)
T TIGR01302 146 -----------------------------------------SEV----------------M-TREEVITVPEGIDLEEAL 167 (450)
T ss_pred -----------------------------------------HHh----------------h-CCCCCEEECCCCcHHHHH
Confidence 000 0 113578999999999999
Q ss_pred HHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 337 MQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 337 aQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
..+..|+.+++-|+|++|.+.|+|..+.
T Consensus 168 ~~m~~~~~~~lpVVDe~G~lvGiVT~~D 195 (450)
T TIGR01302 168 KVLHEHRIEKLPVVDKNGELVGLITMKD 195 (450)
T ss_pred HHHHHcCCCeEEEEcCCCcEEEEEEhHH
Confidence 9999999999999999999999998754
No 137
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.00 E-value=0.0025 Score=67.23 Aligned_cols=113 Identities=9% Similarity=0.021 Sum_probs=85.3
Q ss_pred ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC---CCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhh
Q 041297 174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE---EGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYM 250 (379)
Q Consensus 174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~---dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~v 250 (379)
+.|++ ++ +..+.+++++.+|+++|.+. ....+||||. +|+++|-|+..||..-. ..+..+.|+|
T Consensus 103 ~~gmi-~d-pvtV~pd~tV~dA~~lm~~~--~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------~~~~~V~eIM--- 169 (505)
T PLN02274 103 RVGFV-SD-PVVKSPSSTISSLDELKASR--GFSSVCVTETGTMGSKLLGYVTKRDWDFVN------DRETKLSEVM--- 169 (505)
T ss_pred ccccc-CC-CeeeCCCCcHHHHHHHHHhc--CCceEEEEeCCCcCCeEEEEEEHHHHhhcc------ccCCcHHHHh---
Confidence 34544 56 78899999999999999765 4589999997 48999999998885410 0000000110
Q ss_pred ccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCC
Q 041297 251 DCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWS 330 (379)
Q Consensus 251 d~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~S 330 (379)
+.....++..+..
T Consensus 170 -------------------------------------------------------------------t~~~~lvtv~~~~ 182 (505)
T PLN02274 170 -------------------------------------------------------------------TSDDDLVTAPAGI 182 (505)
T ss_pred -------------------------------------------------------------------ccCCCcEEECCCC
Confidence 1112257899999
Q ss_pred cHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehhh
Q 041297 331 SLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAKK 366 (379)
Q Consensus 331 SLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~~ 366 (379)
+|.+++..+..|+..++=|+|+++.++|+|+.+--.
T Consensus 183 sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIl 218 (505)
T PLN02274 183 DLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVK 218 (505)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHH
Confidence 999999999999999999999999999999976543
No 138
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.00 E-value=0.0027 Score=65.37 Aligned_cols=121 Identities=12% Similarity=0.033 Sum_probs=88.4
Q ss_pred cccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccc---cCceeEEEcCCCcEEeeeCccccCCCcHHHHHHH
Q 041297 162 GLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHI---KQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAI 238 (379)
Q Consensus 162 g~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~---~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~ 238 (379)
..+-..+..++.++ .+++ +..++.++++.+|++.|++... ....++|+|++|+++|-++..+|...+..
T Consensus 123 ~~ll~~~e~tvg~i--Mt~~-~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~~~----- 194 (449)
T TIGR00400 123 NLLLSYSDDSAGRI--MTIE-YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAKPE----- 194 (449)
T ss_pred HHHhCCCcchHHHh--CcCc-eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCCCC-----
Confidence 33334556666665 3577 9999999999999999986322 22468899999999999987666331100
Q ss_pred HhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCccccc
Q 041297 239 ATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVV 318 (379)
Q Consensus 239 atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~ 318 (379)
-+++|+
T Consensus 195 --~~v~~i------------------------------------------------------------------------ 200 (449)
T TIGR00400 195 --EILSSI------------------------------------------------------------------------ 200 (449)
T ss_pred --CcHHHH------------------------------------------------------------------------
Confidence 000000
Q ss_pred CCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 319 HRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 319 ~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
-+..+++.++..++.+++.++..|+...+-|||++|.++|+|+...
T Consensus 201 m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~D 246 (449)
T TIGR00400 201 MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDD 246 (449)
T ss_pred hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHH
Confidence 0123578899999999999999999999999999999999999753
No 139
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.95 E-value=0.0018 Score=51.81 Aligned_cols=110 Identities=16% Similarity=0.112 Sum_probs=74.1
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..+..+++..+|++.|++.- +...++|+|. |+++|-++..+|..+... ..+ .++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~------~~~-~~~---------------- 57 (119)
T cd04598 3 APTVSPDTTVNDVLERFERDP-DLSALAVVDD-GRPVGLIMREALMELLST------PYG-RAL---------------- 57 (119)
T ss_pred cCccCCCCcHHHHHHHHHhCC-CccEEEEEEC-CeeEEEEEHHHHHHHHhc------hhh-HHH----------------
Confidence 667889999999999997631 1468999999 999999987776431100 000 000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. .. + . . .+. -...+.+|.+..++.+++.-+..+
T Consensus 58 ----------------~-~~---~-~-------v-~~~------------------~~~~~~~v~~~~~~~~~~~~~~~~ 90 (119)
T cd04598 58 ----------------Y-GK---K-P-------V-SEV------------------MDPDPLIVEADTPLEEVSRLATGR 90 (119)
T ss_pred ----------------H-cC---C-c-------H-HHh------------------cCCCcEEecCCCCHHHHHHHHHcC
Confidence 0 00 0 0 0 000 113468899999999999999988
Q ss_pred CCcEE---EEeeCCCCcccceEeeh
Q 041297 343 RDRLR---SMAKAENPNFCPVRIQA 364 (379)
Q Consensus 343 RV~~v---WVvd~e~~l~~~v~~~~ 364 (379)
...++ .|+|++|.++|+|+...
T Consensus 91 ~~~~~~~~~vv~~~~~~~Gvvs~~d 115 (119)
T cd04598 91 DSQNLYDGFIVTEEGRYLGIGTVKD 115 (119)
T ss_pred CcccccccEEEeeCCeEEEEEEHHH
Confidence 87555 49999999999998653
No 140
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=96.95 E-value=0.0012 Score=47.69 Aligned_cols=49 Identities=27% Similarity=0.414 Sum_probs=43.1
Q ss_pred ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
.+++ +..++.++++.+|++.|++. ....+||+|.+|+++|-||..+|..
T Consensus 5 m~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~V~d~~~~~~G~is~~dl~~ 53 (57)
T PF00571_consen 5 MTPP-PITVSPDDSLEEALEIMRKN--GISRLPVVDEDGKLVGIISRSDLLK 53 (57)
T ss_dssp SBSS-SEEEETTSBHHHHHHHHHHH--TSSEEEEESTTSBEEEEEEHHHHHH
T ss_pred CcCC-CEEEcCcCcHHHHHHHHHHc--CCcEEEEEecCCEEEEEEEHHHHHh
Confidence 4566 99999999999999999986 4589999999999999999888754
No 141
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.94 E-value=0.0027 Score=59.52 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=77.8
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..+..+++..+|++.|.+. ....++|+|.+|+++|-++..+|... .. .. .+++.
T Consensus 166 ~~~v~~~~~v~~a~~~~~~~--~~~~~~Vvd~~g~~~Givt~~dl~~~-------~~-----------~~-~~~~~---- 220 (268)
T TIGR00393 166 LPLIAPTTSFKDALLEMSEK--RLGSAIVCDENNQLVGVFTDGDLRRA-------LL-----------GG-GSLKS---- 220 (268)
T ss_pred CCcCCCCCcHHHHHHHHhhc--CCcEEEEEeCCCCEEEEEEcHHHHHH-------Hh-----------cC-CcccC----
Confidence 77888999999999999764 45789999999999999998887540 00 00 00000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. . +|. -+...+++.+..+|.+++..+..+
T Consensus 221 -------------------------~-------v-~~i------------------m~~~~~~v~~~~~l~~a~~~m~~~ 249 (268)
T TIGR00393 221 -------------------------E-------V-RDF------------------MTLGPKTFKLDALLLEALEFLERR 249 (268)
T ss_pred -------------------------c-------H-HHh------------------CCCCCeEECCCCcHHHHHHHHHHc
Confidence 0 0 000 112367899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceE
Q 041297 343 RDRLRSMAKAENPNFCPVR 361 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~ 361 (379)
+.+++=|+|++|.++|+|+
T Consensus 250 ~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 250 KITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred CCcEEEEECCCCeEEEEEC
Confidence 9999999999999999985
No 142
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.91 E-value=0.0032 Score=66.07 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=80.7
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
...+.|++++-||++.|. +++..++|+++..+- .=++|..|+. ++ . +..+|.++
T Consensus 99 pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gkl---------------vGIVT~rDL~-~~-------~--~~~~V~di 153 (479)
T PRK07807 99 PVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRP---------------VGVVTEADCA-GV-------D--RFTQVRDV 153 (479)
T ss_pred CeEECCCCCHHHHHHHHHhcCCceEEEECCCCeE---------------EEEEeHHHHh-cC-------c--cCCCHHHh
Confidence 568999999999999998 588888887643221 1189999983 21 1 12446653
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
.+++ +..++++++..+|+++|.+. +...+||||.+|+++|-|+..||-.
T Consensus 154 --Mt~~-~itV~~d~sL~eAl~lM~~~--~i~~LPVVD~~g~lvGIIT~~DIl~ 202 (479)
T PRK07807 154 --MSTD-LVTLPAGTDPREAFDLLEAA--RVKLAPVVDADGRLVGVLTRTGALR 202 (479)
T ss_pred --ccCC-ceEECCCCcHHHHHHHHHhc--CCCEEEEEcCCCeEEEEEEHHHHHH
Confidence 5677 99999999999999999886 5589999999999999999998854
No 143
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.91 E-value=0.003 Score=49.97 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=76.3
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..+..+++..+|++.|.+- ....++|++.+|+++|-++..+|...- +. .++ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~~~G~v~~~~l~~~~-------~~---~~~---~~~---------- 57 (114)
T cd04629 3 PVTFTPDMSVTEAVEKLLKS--KISGGPVVDDNGNLVGFLSEQDCLKQL-------LE---SSY---HCD---------- 57 (114)
T ss_pred CeEeCCCCCHHHHHHHHHhc--CCCCccEECCCCeEEEEeehHHHHHHh-------hh---hhh---ccC----------
Confidence 67889999999999999653 346899999999999999888775410 00 000 000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. ... . .+. -...+.++.+..+|.+++..+..+
T Consensus 58 ------------------~----~~~-------v-~~~------------------~~~~~~~v~~~~~l~~~~~~~~~~ 89 (114)
T cd04629 58 ------------------G----VAT-------V-RDI------------------MTTEVLTVSPDDSIVDLAQLMLKA 89 (114)
T ss_pred ------------------C----Ccc-------H-HHH------------------hccCceEECCCCcHHHHHHHHHHh
Confidence 0 000 0 000 012367899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|+ |.++|+|+.+
T Consensus 90 ~~~~~~Vv~~-~~~~Gvit~~ 109 (114)
T cd04629 90 KPKRYPVVDD-GKLVGQISRR 109 (114)
T ss_pred CCCccCEEEC-CEEEEEEEHH
Confidence 9999989998 8999999854
No 144
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.89 E-value=0.0034 Score=50.05 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=70.0
Q ss_pred cccCccccHHHHHHHHHhcC-CceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------cc
Q 041297 17 IALGQFIHRCHALLALKRLN-ESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------CF 87 (379)
Q Consensus 17 ~~~~~~~tv~dAl~aL~~s~-~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------VS 87 (379)
+++....|+.+|++.+.+++ ...++|=+ ..+++|+|+.-|++-++.. +.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----------------------~~~~~G~v~~~dl~~~~~~~~~~~~~~i~ 61 (115)
T cd04620 4 LTVTPDTPVADAIALMSQQGDSSCVLVVE----------------------KGRLLGIFTERDIVRLTAIGKDLSDLPIG 61 (115)
T ss_pred eEeCCCCcHHHHHHHHHhcCCCceEEEcC----------------------CCcEEEEEeHHHHHHHHhcCCCccccCHH
Confidence 45677889999999998777 55666654 2369999999998864431 33
Q ss_pred ccccCCCCceEEeCCC--CchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHH
Q 041297 88 CSFAKDSGIVRHLKPS--ASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIR 155 (379)
Q Consensus 88 ~li~~~~gll~~V~P~--tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvR 155 (379)
++..+ .+..+.|+ +++.+|++.|. .+.+.++|++...+- .=++|++|++|
T Consensus 62 ~~~~~---~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~---------------~Gvit~~dl~~ 114 (115)
T cd04620 62 EVMTQ---PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQL---------------IGLVTAESIRQ 114 (115)
T ss_pred HhcCC---CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCE---------------EEEEEhHHhhc
Confidence 43322 24567776 78999999999 578889887643211 11899999986
No 145
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.89 E-value=0.0033 Score=66.26 Aligned_cols=106 Identities=17% Similarity=0.221 Sum_probs=79.6
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceE-EeeHHHHHHHHHhhhcccCCCCCCcccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYC-WLTQEDLIRYFLNFIGLLNPTPNQPINS 174 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC-~LTQeDVvRFLl~~ig~l~p~p~~SI~s 174 (379)
...+.|+++|-||+++|. .+...++|+++.-.+ .++. ++|..|+. |.. .+..+|++
T Consensus 110 pvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~-------------GklvGIVT~~DL~-~v~--------~~~~~V~e 167 (505)
T PLN02274 110 PVVKSPSSTISSLDELKASRGFSSVCVTETGTMG-------------SKLLGYVTKRDWD-FVN--------DRETKLSE 167 (505)
T ss_pred CeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcC-------------CeEEEEEEHHHHh-hcc--------ccCCcHHH
Confidence 578999999999999998 578888887642100 1111 89999984 432 23556666
Q ss_pred cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
+=--+++ +..++.+++..+|+++|.+. +...+||||.+|+|+|=|+..||
T Consensus 168 IMt~~~~-lvtv~~~~sL~eAl~~m~~~--~~~~LPVVD~~g~LvGvITr~DI 217 (505)
T PLN02274 168 VMTSDDD-LVTAPAGIDLEEAEAVLKDS--KKGKLPLVNEDGELVDLVTRTDV 217 (505)
T ss_pred HhccCCC-cEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHH
Confidence 4322344 78999999999999999986 55899999999999999987776
No 146
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=96.85 E-value=0.003 Score=49.65 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=77.0
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+++..+|++.|++. ....++|++.+|+++|-|+..+|..+-. ... ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~G~v~~~~l~~~~~------------------~~~-~~~----- 56 (114)
T cd04613 3 VVTIPEDTPLNELLDVIAHS--PENNFPVVDDDGRLVGIVSLDDIREILF------------------DPS-LYD----- 56 (114)
T ss_pred ceeeCCCCcHHHHHHHHHhC--CCcceeEECCCCCEEEEEEHHHHHHHHh------------------ccc-ccc-----
Confidence 77899999999999999775 3378999999999999998777653100 000 000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. . . . .+. -+..+.++.+..++..++.++..+
T Consensus 57 -------------------~---~-~-------v-~~~------------------~~~~~~~v~~~~~~~~~~~~~~~~ 87 (114)
T cd04613 57 -------------------L---V-V-------A-SDI------------------MTKPPVVVYPEDSLEDALKKFEDS 87 (114)
T ss_pred -------------------c---E-E-------H-HHh------------------ccCCCcEEcCCCCHHHHHHHHhhC
Confidence 0 0 0 0 000 112367888999999999999999
Q ss_pred CCcEEEEeeC-CCCcccceEee
Q 041297 343 RDRLRSMAKA-ENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~-e~~l~~~v~~~ 363 (379)
+.+++=|+|. +|.++|+|...
T Consensus 88 ~~~~~~Vv~~~~~~~~Gvvt~~ 109 (114)
T cd04613 88 DYEQLPVVDDDPGKLLGILSRS 109 (114)
T ss_pred CccEeeEEeCCCCEEEEEEEhH
Confidence 9999999998 89999999754
No 147
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.80 E-value=0.0065 Score=63.70 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=80.0
Q ss_pred ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297 178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK 257 (379)
Q Consensus 178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe 257 (379)
+.++ ...+..+++..+|+++|++. ....++|+| +|+++|-++-.||...+. ..|.+
T Consensus 94 m~~~-pvtv~p~~tI~eA~~lm~~~--~~~~~vVvD-~gklvGIVT~rDL~~~~~--------------------~~~V~ 149 (475)
T TIGR01303 94 VLDT-PITLAPHDTVSDAMALIHKR--AHGAAVVIL-EDRPVGLVTDSDLLGVDR--------------------FTQVR 149 (475)
T ss_pred cccC-CeEECCCCCHHHHHHHHHhc--CCeEEEEEE-CCEEEEEEEHHHhhcCCC--------------------CCCHH
Confidence 4456 78899999999999999875 336677776 589999999988854220 00000
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297 258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM 337 (379)
Q Consensus 258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa 337 (379)
++ -+..++++.+..+|.+++.
T Consensus 150 dI-----------------------------------------------------------Mt~~litv~~~~sL~eAl~ 170 (475)
T TIGR01303 150 DI-----------------------------------------------------------MSTDLVTAPADTEPRKAFD 170 (475)
T ss_pred HH-----------------------------------------------------------ccCCceEeCCCCcHHHHHH
Confidence 00 0134689999999999999
Q ss_pred HHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 338 QALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 338 QAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
.|..|+++++-|||++|.++|+|+.+-
T Consensus 171 lM~~~~i~~LPVVD~~g~LvGIIT~~D 197 (475)
T TIGR01303 171 LLEHAPRDVAPLVDADGTLAGILTRTG 197 (475)
T ss_pred HHHHcCCCEEEEEcCCCeEEEEEEHHH
Confidence 999999999999999999999998654
No 148
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.80 E-value=0.0097 Score=46.84 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=72.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|+.++-++++.|. ++..+++|++..-+ -+=++|+.|+++.. ...++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---------------~~g~v~~~~l~~~~----------~~~~~~~~ 57 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGE---------------LVGIITRKDLLRNP----------EEEQLALL 57 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCc---------------EEEEEEHHHHHhcc----------ccchHHHH
Confidence 456889999999999997 46667777654311 12288999987521 11223332
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
..++ +..|+.+++..+++..|++. +...+||++ +|+++|-|+..++-
T Consensus 58 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vvd-~~~~~G~it~~d~~ 104 (106)
T cd04638 58 --MTRD-PPTVSPDDDVKEAAKLMVEN--NIRRVPVVD-DGKLVGIVTVADIV 104 (106)
T ss_pred --hcCC-CceECCCCCHHHHHHHHHHc--CCCEEEEEE-CCEEEEEEEHHHhh
Confidence 3556 88899999999999999875 336799998 58999999987763
No 149
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=96.79 E-value=0.0045 Score=63.75 Aligned_cols=103 Identities=24% Similarity=0.296 Sum_probs=77.7
Q ss_pred eEEeCCCCchhHHHHHHhc------CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCC
Q 041297 97 VRHLKPSASLLEAVDLLLG------GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQ 170 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~~------G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~ 170 (379)
+..+++++++-||++.|.+ +...+.|+++.-+- .=.+|..|+++ + -+..
T Consensus 141 ~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l---------------~GvV~l~dLl~---------a-~~~~ 195 (449)
T TIGR00400 141 YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHL---------------KGVLSIRDLIL---------A-KPEE 195 (449)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeE---------------EEEEEHHHHhc---------C-CCCC
Confidence 6789999999999999973 34455555432111 11788888864 1 1344
Q ss_pred cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
++.+ +.+++ ++.++.+++..+|++.|++. +..++||||.+|+++|-|+..|+-.
T Consensus 196 ~v~~--im~~~-~~~v~~~~~~~eal~~m~~~--~~~~lpVVD~~g~lvGiIt~~Dil~ 249 (449)
T TIGR00400 196 ILSS--IMRSS-VFSIVGVNDQEEVARLIQKY--DFLAVPVVDNEGRLVGIVTVDDIID 249 (449)
T ss_pred cHHH--HhCCC-CeeECCCCCHHHHHHHHHHc--CCCEEeEEcCCCeEEEEEEHHHHHH
Confidence 5555 35677 99999999999999999985 5689999999999999999998854
No 150
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.75 E-value=0.0057 Score=48.38 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=65.0
Q ss_pred cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------cc
Q 041297 17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------CF 87 (379)
Q Consensus 17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------VS 87 (379)
..+....|+.+|++.+.+.+...+||.+. .+++|+|+.-|++-++.. +.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----------------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~ 61 (112)
T cd04802 4 ITVDPDTTVYEAANIMTENNIGRLIVVDN----------------------EKPVGIITERDLVKKVVSRNLKPREVPVG 61 (112)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEEC----------------------CEEEEEEEHHHHHHHHhhccCCcccCCHH
Confidence 34667789999999999888889999872 269999999998864421 33
Q ss_pred ccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCC
Q 041297 88 CSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAG 126 (379)
Q Consensus 88 ~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~ 126 (379)
++.. -.+..+.|++++.|+++.|. .+.+.++|++..
T Consensus 62 ~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~ 98 (112)
T cd04802 62 EVMS---TPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD 98 (112)
T ss_pred HhcC---CCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC
Confidence 4432 23667899999999999999 678888887643
No 151
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=96.74 E-value=0.0027 Score=45.75 Aligned_cols=43 Identities=9% Similarity=-0.047 Sum_probs=40.4
Q ss_pred cceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 322 EAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 322 ~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
+++++++..|+.+++..+..++.++++|+|++|.++|+++..-
T Consensus 8 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~d 50 (57)
T PF00571_consen 8 PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSD 50 (57)
T ss_dssp SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHH
T ss_pred CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHH
Confidence 6789999999999999999999999999999999999998643
No 152
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.67 E-value=0.0084 Score=50.76 Aligned_cols=136 Identities=15% Similarity=0.102 Sum_probs=78.3
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+.+++++++..++++.|++. ...++||++. |+++|-++..+|.. ++......+ .+... .....+..-
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~--~~~~~~Vvd~-~~~~G~v~~~dl~~-------~~~~~~~~~--~~~~~-~~~~~~~~~ 69 (143)
T cd04634 3 PITCNADDTISDAARLLREN--KISGAPVLDG-GKLVGIVSESDILK-------LLVTHDPSG--NLWLP-SPLELIELP 69 (143)
T ss_pred cEEecCCCCHHHHHHHHHHc--CCCcceEeEC-CeEEEEecHHHHHH-------HHHhccCcc--ccccC-Ccceeeecc
Confidence 78999999999999999875 4479999998 99999998887643 111100000 00000 000000000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
+++-++.+......+... . . ....--...+.++.+..++..++..+..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~-----~-~-------------------------~v~~~~~~~~~~v~~~~~l~~a~~~~~~~ 118 (143)
T cd04634 70 LREFINWEETKRALTDAG-----K-M-------------------------KVRDIMTKKVITISPDASIEDAAELMVRH 118 (143)
T ss_pred chheeehHHHHHHHHHHh-----c-C-------------------------CHHHHcCCCCeEECCCCcHHHHHHHHHHc
Confidence 000000000000000000 0 0 00000123468999999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|. |..+|+|+..
T Consensus 119 ~~~~~~Vv~~-~~~~Gvvt~~ 138 (143)
T cd04634 119 KIKRLPVVED-GRLVGIVTRG 138 (143)
T ss_pred CCCEEEEEEC-CEEEEEEEHH
Confidence 9999999998 8899999854
No 153
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.67 E-value=0.0079 Score=62.22 Aligned_cols=105 Identities=14% Similarity=0.296 Sum_probs=81.2
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCc--ccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGI--KLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN 173 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~--k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~ 173 (379)
+..++|+.++-||++.|. .|..+++|+++.. .+ -.=++|..|+.+ ... +..++.
T Consensus 90 ~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~--------------lvGIVt~rDL~~-~~~--------~~~~V~ 146 (450)
T TIGR01302 90 PVTISPETTVADVLELMERKGISGIPVVEDGDMTGK--------------LVGIITKRDIRF-VKD--------KGKPVS 146 (450)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCe--------------EEEEEEHHHHhh-hhc--------CCCCHH
Confidence 578999999999999999 6899999977532 11 011899999963 211 234455
Q ss_pred cccccc-CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 174 SHNIID-DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 174 sLG~I~-~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
++ .+ ++ +..++.+++..+|++.|++. +...+||||.+|+++|-|+..||-.
T Consensus 147 dv--m~~~~-~~~V~~~~sl~eal~~m~~~--~~~~lpVVDe~G~lvGiVT~~DIl~ 198 (450)
T TIGR01302 147 EV--MTREE-VITVPEGIDLEEALKVLHEH--RIEKLPVVDKNGELVGLITMKDIVK 198 (450)
T ss_pred Hh--hCCCC-CEEECCCCcHHHHHHHHHHc--CCCeEEEEcCCCcEEEEEEhHHhhh
Confidence 43 34 36 89999999999999999886 4588999999999999999988854
No 154
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.66 E-value=0.0071 Score=61.35 Aligned_cols=104 Identities=18% Similarity=0.319 Sum_probs=77.5
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+.|++++-|+++.|. ++...++|++..-+- .=++|..|+.+.+...-. .+..++.++
T Consensus 345 ~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~~----~~~~~v~~i 405 (454)
T TIGR01137 345 PVTVHPTETVGDAIEILREYGFDQLPVVTEAGKV---------------LGSVTLRELLSALFAGKA----NPDDAVSKV 405 (454)
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeE---------------EEEEEHHHHHHHHhccCC----CcCCCHHHh
Confidence 678999999999999998 577888887642111 118999999997765211 123355553
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
.+++ +..|+.+++..++++.|.+. ..+||+.+|+++|=|+..+|
T Consensus 406 --m~~~-~~~v~~~~~l~~a~~~~~~~-----~~~vV~~~g~liGvvt~~dl 449 (454)
T TIGR01137 406 --MSKK-FIQIGEGEKLSDLSKFLEKN-----SSAIVTEEGKPIGVVTKIDL 449 (454)
T ss_pred --cCCC-CeEECCcCcHHHHHHHHHHC-----CeeEEEECCEEEEEEEHHHH
Confidence 5677 88999999999999999762 24667778999999998876
No 155
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.66 E-value=0.019 Score=60.01 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=83.1
Q ss_pred ccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecc---cccccc
Q 041297 14 CDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC---PCFCSF 90 (379)
Q Consensus 14 ~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la---~VS~li 90 (379)
-|-+++....|+++|++.+.+++...+||-+. ..+++|+|+.-|+..... .|.++.
T Consensus 95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~---------------------~g~lvGiVt~~DL~~~~~~~~~V~dim 153 (486)
T PRK05567 95 TDPVTVTPDTTLAEALALMARYGISGVPVVDE---------------------NGKLVGIITNRDVRFETDLSQPVSEVM 153 (486)
T ss_pred CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc---------------------CCEEEEEEEHHHhhhcccCCCcHHHHc
Confidence 46678888999999999999999999999872 257999999999853221 155555
Q ss_pred cCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHH
Q 041297 91 AKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFL 158 (379)
Q Consensus 91 ~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl 158 (379)
.+ ..+..+.+++++.|+++.|. ++++.++|++...+-. =++|.+||++++.
T Consensus 154 ~~--~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lv---------------GiIT~~DLl~~~~ 205 (486)
T PRK05567 154 TK--ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLK---------------GLITVKDIEKAEE 205 (486)
T ss_pred CC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEE---------------EEEEhHHhhhhhh
Confidence 31 35778999999999999999 6899988877543221 1899999999973
No 156
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.59 E-value=0.0026 Score=52.90 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=74.3
Q ss_pred cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------ccc
Q 041297 17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------CFC 88 (379)
Q Consensus 17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------VS~ 88 (379)
+++....|+.+|++.+++.+...+||=+. .++++|+|+.-|++-.+.. |++
T Consensus 5 ~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---------------------~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~ 63 (124)
T cd04608 5 VTVLPTVTCAEAIEILKEKGFDQLPVVDE---------------------SGKILGMVTLGNLLSSLSSGKVQPSDPVSK 63 (124)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcC---------------------CCCEEEEEEHHHHHHHHHHhccCCCCcHHH
Confidence 45677889999999999988888888763 2469999999998853321 677
Q ss_pred cccCCCCceEEeCCCCchhHHHHHHhcCccEEEE-ecCCcccCCCCCCcccccCCcceEEeeHHHHHHHH
Q 041297 89 SFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVI-LPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYF 157 (379)
Q Consensus 89 li~~~~gll~~V~P~tsLLdAie~m~~G~~rllV-i~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFL 157 (379)
+..+ .+..++|++++.++.+.|.. -+-+.+ .+....+.+ ...+++.-.=++|+.|+++||
T Consensus 64 im~~---~~~~v~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~-----v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 64 ALYK---QFKRVNKNDTLGKLSRILET-DAFLLVFFEQISSAAI-----GKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred Hhhc---cceecCCCCCHHHHHhhccc-CCceEEEecccccccc-----ccccccceEEEEehhHhhhhC
Confidence 6653 36689999999999997764 222222 222111100 011122333399999999985
No 157
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.50 E-value=0.011 Score=62.15 Aligned_cols=109 Identities=13% Similarity=0.116 Sum_probs=83.3
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC---CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhcc
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE---GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDC 252 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d---GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~ 252 (379)
|++ ++ ...++.++++.+|+++|++. ..+.+||+|.+ |+++|-++..||...+.. ...+.|+|
T Consensus 101 g~i-~d-pvtv~pd~tv~eA~~lm~~~--~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~------~~~V~diM----- 165 (495)
T PTZ00314 101 GFI-MD-PYVLSPNHTVADVLEIKEKK--GFSSILITVDGKVGGKLLGIVTSRDIDFVKDK------STPVSEVM----- 165 (495)
T ss_pred ccc-cC-CeecCCCCCHHHHHHHHHHc--CCcEEEEEeCCccCCeEEEEEEHHHHhhcccC------CCCHHHhh-----
Confidence 444 44 67899999999999999875 55899999984 899999998887642210 00000110
Q ss_pred CCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcH
Q 041297 253 GRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSL 332 (379)
Q Consensus 253 ~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSL 332 (379)
......++.++..+|
T Consensus 166 -----------------------------------------------------------------t~~~~lvtv~~~~sl 180 (495)
T PTZ00314 166 -----------------------------------------------------------------TPREKLVVGNTPISL 180 (495)
T ss_pred -----------------------------------------------------------------CCcCCceEeCCCCCH
Confidence 111246888999999
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 333 MAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 333 vAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
.+++..+..|+.+++=|+|+++.++|+|+...
T Consensus 181 ~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~D 212 (495)
T PTZ00314 181 EEANEVLRESRKGKLPIVNDNGELVALVSRSD 212 (495)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCcEEEEEEehH
Confidence 99999999999999999999999999998764
No 158
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.49 E-value=0.012 Score=62.04 Aligned_cols=105 Identities=16% Similarity=0.277 Sum_probs=80.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceE-EeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYC-WLTQEDLIRYFLNFIGLLNPTPNQPIN 173 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC-~LTQeDVvRFLl~~ig~l~p~p~~SI~ 173 (379)
...+.|++++-||+++|. .+..+++|+++. ..+ ++. ++|..|+. |... ...+|.
T Consensus 106 pvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g--------------kLvGIVt~~DL~-~~~~--------~~~~V~ 162 (495)
T PTZ00314 106 PYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG--------------KLLGIVTSRDID-FVKD--------KSTPVS 162 (495)
T ss_pred CeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC--------------eEEEEEEHHHHh-hccc--------CCCCHH
Confidence 468999999999999998 588888887652 111 111 89999985 3321 234455
Q ss_pred ccccccC--CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 174 SHNIIDD--AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 174 sLG~I~~--~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
++ ..+ + +..++++++..+|++.|.+. +...+||||.+|+++|=|+..||..
T Consensus 163 di--Mt~~~~-lvtv~~~~sl~eAl~lm~e~--~i~~LPVVd~~g~liGIIT~~DIl~ 215 (495)
T PTZ00314 163 EV--MTPREK-LVVGNTPISLEEANEVLRES--RKGKLPIVNDNGELVALVSRSDLKK 215 (495)
T ss_pred Hh--hCCcCC-ceEeCCCCCHHHHHHHHHHc--CCCeEEEEcCCCcEEEEEEehHhhh
Confidence 43 344 6 89999999999999999885 5589999999999999999988853
No 159
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.44 E-value=0.011 Score=46.61 Aligned_cols=103 Identities=19% Similarity=0.236 Sum_probs=74.3
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..++.+.+..+|++.|.+. ....++|++. |+++|-++..+|.. .+...++ +.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~--~~~~i~V~~~-~~~~G~v~~~~l~~----------~~~~~~~----~~---------- 55 (111)
T cd04800 3 PVTCSPDTTIREAARLMTEH--RVSSLLVVDD-GRLVGIVTDRDLRN----------RVVAEGL----DP---------- 55 (111)
T ss_pred CEEECCCCcHHHHHHHHHHc--CCCeEEEEEC-CEEEEEEEhHHHHH----------HHhccCC----Cc----------
Confidence 78899999999999999763 3478999998 99999998877642 0000000 00
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. . .. .+. -...++++.+..+|..+|..+..+
T Consensus 56 -----------------------~-~------~i-~~~------------------~~~~~~~v~~~~~l~~~~~~~~~~ 86 (111)
T cd04800 56 -----------------------D-T------PV-SEV------------------MTAPPITIPPDATVFEALLLMLER 86 (111)
T ss_pred -----------------------c-C------CH-HHH------------------hCCCCeEECCCCcHHHHHHHHHHc
Confidence 0 0 00 000 113467899999999999999999
Q ss_pred CCcEEEEeeCCCCcccceEe
Q 041297 343 RDRLRSMAKAENPNFCPVRI 362 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~ 362 (379)
+.+++=|+|+ |.++|+++.
T Consensus 87 ~~~~~~Vv~~-~~~~Giit~ 105 (111)
T cd04800 87 GIHHLPVVDD-GRLVGVISA 105 (111)
T ss_pred CCCeeeEeEC-CEEEEEEEH
Confidence 9999999987 889999874
No 160
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.43 E-value=0.0046 Score=40.59 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=37.9
Q ss_pred ceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 323 AIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 323 ~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
++++.+..++.+++.++..++.++++|+|+++..+|++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~ 42 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRR 42 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHH
Confidence 57889999999999999999999999999999999999864
No 161
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.42 E-value=0.012 Score=61.85 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=77.1
Q ss_pred eEEeCCCCchhHHHHHHhc-CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLLG-GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~~-G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
...+.|++++-||++.|.+ +...++|++++ +- .=++|+.|+. +. + ...+|+++
T Consensus 98 pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~g-kl---------------vGIVT~rDL~-~~--------~-~~~~V~dI 151 (475)
T TIGR01303 98 PITLAPHDTVSDAMALIHKRAHGAAVVILED-RP---------------VGLVTDSDLL-GV--------D-RFTQVRDI 151 (475)
T ss_pred CeEECCCCCHHHHHHHHHhcCCeEEEEEECC-EE---------------EEEEEHHHhh-cC--------C-CCCCHHHH
Confidence 4579999999999999984 56555556532 11 1189999972 21 1 12446654
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
.+++ +..++.+++..+|+++|.+. +...+||||.+|+++|-|+..||..
T Consensus 152 --Mt~~-litv~~~~sL~eAl~lM~~~--~i~~LPVVD~~g~LvGIIT~~DLl~ 200 (475)
T TIGR01303 152 --MSTD-LVTAPADTEPRKAFDLLEHA--PRDVAPLVDADGTLAGILTRTGALR 200 (475)
T ss_pred --ccCC-ceEeCCCCcHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHHHH
Confidence 4567 99999999999999999986 4478999999999999999888753
No 162
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=96.28 E-value=0.0098 Score=50.99 Aligned_cols=91 Identities=21% Similarity=0.176 Sum_probs=70.0
Q ss_pred ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-------c--
Q 041297 16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-------C-- 86 (379)
Q Consensus 16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-------V-- 86 (379)
-+++....|+.+|++.+..++...+||-+. .++++|+|+.-|++-++.. +
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---------------------~g~l~Givt~~Dl~~~~~~~~~~~~~~~~ 61 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDS---------------------DDFLEGILTLGDIQRFLFTNKTTRVQPED 61 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEECC---------------------CCeEEEEEEHHHHHHHHhhccccccccch
Confidence 356778899999999999999888999873 2469999999998876653 1
Q ss_pred ----------cccccC------CCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCc
Q 041297 87 ----------FCSFAK------DSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGI 127 (379)
Q Consensus 87 ----------S~li~~------~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~ 127 (379)
+++..+ -...+..+.|+++|.||++.|. ++++++.|+++..
T Consensus 62 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 62 ETKQTNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred hhcccccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 112211 0123778999999999999999 6999999987643
No 163
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=96.12 E-value=0.0089 Score=59.04 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=93.7
Q ss_pred hcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHh
Q 041297 161 IGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIAT 240 (379)
Q Consensus 161 ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~at 240 (379)
+...-.+|..++.++ +.++ .+++..+++.-+|.+++.+- ...+.||||.| |+||=|+.+|... |+|.
T Consensus 163 i~~m~siPk~~V~~~--~s~~-~i~v~~d~tl~eaak~f~~~--~i~GaPVvd~d-k~vGiit~~dI~~-------aia~ 229 (294)
T COG2524 163 ISKMVSIPKEKVKNL--MSKK-LITVRPDDTLREAAKLFYEK--GIRGAPVVDDD-KIVGIITLSDIAK-------AIAN 229 (294)
T ss_pred EeeeeecCcchhhhh--ccCC-ceEecCCccHHHHHHHHHHc--CccCCceecCC-ceEEEEEHHHHHH-------HHHc
Confidence 566677889998887 4677 99999999999999988664 45899999988 9999998776533 2221
Q ss_pred cchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCC
Q 041297 241 LLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHR 320 (379)
Q Consensus 241 LSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~ 320 (379)
|++-++|+. . =+
T Consensus 230 ---g~~~~kV~~-------------------------~----------------------------------------M~ 241 (294)
T COG2524 230 ---GNLDAKVSD-------------------------Y----------------------------------------MR 241 (294)
T ss_pred ---CCccccHHH-------------------------H----------------------------------------hc
Confidence 222222221 0 12
Q ss_pred ccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEe
Q 041297 321 SEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRI 362 (379)
Q Consensus 321 ~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~ 362 (379)
+.++|-+-.-.+.++|.-|..|.|+|+-|||++|..+|++.=
T Consensus 242 k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITr 283 (294)
T COG2524 242 KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITR 283 (294)
T ss_pred cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEeh
Confidence 347888888899999999999999999999999999999864
No 164
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.10 E-value=0.0081 Score=49.48 Aligned_cols=70 Identities=23% Similarity=0.436 Sum_probs=55.7
Q ss_pred HHHHhhhcccCCCCC----CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 155 RYFLNFIGLLNPTPN----QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 155 RFLl~~ig~l~p~p~----~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
+|+++.+|.=.|-.. .++.++ ..++ +..+..+++..+|++.|.+. ....+||||.+|+++|-|+..+|.+
T Consensus 39 ~~vl~~~~~~~p~ll~~v~~~v~di--m~~~-~~~v~~~~~l~~a~~~~~~~--~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 39 RYVLEYLGIEPPILLADVHPRVRDV--INRK-PVTARPNDPLREALNLMHEH--NIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred HHHHHHcCCCCchhhcchhhhHHHh--cCCC-CCEECCcCcHHHHHHHHHHc--CCCEEEEECCCCeEEEEEEHHHhhc
Confidence 899998887555332 345553 3456 88899999999999999875 4578999999999999999988864
No 165
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=95.97 E-value=0.02 Score=46.05 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=73.4
Q ss_pred ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecccccccccCCCC
Q 041297 16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCPCFCSFAKDSG 95 (379)
Q Consensus 16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~VS~li~~~~g 95 (379)
-..+....+++++.+.+.+.+...+||=+... -.++++|+|+.-|+..+... +.. .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~------------------~~~~~~G~v~~~dl~~~~~~---~m~---~ 59 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE------------------ESPRLVGYILRSQLVVALKN---YID---P 59 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEcCCC------------------CCCEEEEEEeHHHHHHHHHH---hcc---C
Confidence 34567788999999999888777788866210 02579999999998765543 222 2
Q ss_pred ceEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297 96 IVRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 156 (379)
Q Consensus 96 ll~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF 156 (379)
....+++++++.++++.|. +|.+.++|++++ .. -++|+.|+++|
T Consensus 60 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~-----------------Gvvt~~dl~~~ 105 (105)
T cd04591 60 SPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLV-----------------GIITRKDLLKA 105 (105)
T ss_pred CCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEE-----------------EEEEhhhhhcC
Confidence 3567899999999999998 789888887432 12 28888888775
No 166
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=95.96 E-value=0.031 Score=57.19 Aligned_cols=114 Identities=13% Similarity=0.045 Sum_probs=84.2
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL 164 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l 164 (379)
|.++.-+- .-+..+++++++-|+++.|. +|..|+.|.+....+. .. +++..|+++++.+
T Consensus 193 v~diMtpr-~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~i--------vG------iv~~kDll~~~~~----- 252 (408)
T TIGR03520 193 TKQVMRPR-LDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNI--------TG------VLYIKDLLPHLNK----- 252 (408)
T ss_pred eeeeCCch-HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCce--------EE------EEEHHHHHhHhcc-----
Confidence 56665321 34889999999999999999 7999999977554441 11 8899999987642
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
. ... +.-+-++ ++.|+.++++.++++.|++. +..-..|||..|.++|=++..|+-
T Consensus 253 ~---~~~---l~~~~~~-~~~Vpe~~~l~~ll~~m~~~--~~~~aiVvDE~G~~~GiVT~eDil 307 (408)
T TIGR03520 253 K---NFD---WQSLLRE-PYFVPENKKLDDLLRDFQEK--KNHLAIVVDEYGGTSGLVTLEDII 307 (408)
T ss_pred C---CCC---HHHHcCC-CeEeCCCCcHHHHHHHHHhc--CceEEEEEcCCCCEEEEEEHHHHH
Confidence 1 112 2223456 78999999999999999985 446667788889888888888773
No 167
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=95.94 E-value=0.029 Score=56.77 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=71.3
Q ss_pred EeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccccc
Q 041297 99 HLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNI 177 (379)
Q Consensus 99 ~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~ 177 (379)
...++.+.-++++.|. ++...++|++..-+ -.-|++.+++.+|+... + ++.+ .
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~g~~~~~~~~~~~~~~-~--------~~~~--~ 307 (363)
T TIGR01186 254 TKTADKGPRSALQLMRDERVDSLYVVDRQNK---------------LVGVVDVESIKQARKKA-Q--------GLQD--V 307 (363)
T ss_pred eecCCCCHHHHHHHHHhcCCceEEEEcCCCC---------------EEEEEeHHHHHHHhhcC-C--------chhh--h
Confidence 3456667788888887 57777777653221 12299999999988642 2 1222 1
Q ss_pred ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
+.++ +..|+.+++..+++++|... ...+||||++|+++|.|+..+|
T Consensus 308 ~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~g~i~~~~~ 353 (363)
T TIGR01186 308 LIDD-IYTVDAGTLLRETVRKVLKA---GIKVPVVDEDQRLVGIVTRGSL 353 (363)
T ss_pred hccC-CceECCCCcHHHHHHHHHhC---CCCEEEECCCCcEEEEEEHHHH
Confidence 3455 77899999999999999764 3349999999999999987765
No 168
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.92 E-value=0.027 Score=57.82 Aligned_cols=98 Identities=23% Similarity=0.248 Sum_probs=71.5
Q ss_pred eCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcccccccc
Q 041297 100 LKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSHNII 178 (379)
Q Consensus 100 V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~I 178 (379)
..++...-+|++.|. .|...++|++...+- .-|+|.+|+.++..+. .++.+ ++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~g~~~~~~~~~~~~~~---------~~~~~--~~ 343 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKF---------------VGAVSIDSLKTALTQQ---------QGLDA--AL 343 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcE---------------EEEEeHHHHHhhhhcC---------Cchhh--hh
Confidence 345567778888887 678888886543221 1299999998887531 12222 24
Q ss_pred cCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 179 DDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 179 ~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
.++ +..|..+++..++++++.. ....+||||++|+++|.|+..+|
T Consensus 344 ~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~g~~~~~~~ 388 (400)
T PRK10070 344 IDA-PLAVDAQTPLSELLSHVGQ---APCAVPVVDEDQQYVGIISKGML 388 (400)
T ss_pred ccC-CceeCCCCCHHHHHHHHHh---CCCcEEEECCCCcEEEEEEHHHH
Confidence 566 7889999999999998866 34569999999999999987766
No 169
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=95.88 E-value=0.026 Score=55.40 Aligned_cols=118 Identities=11% Similarity=0.139 Sum_probs=83.8
Q ss_pred CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297 169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLM 247 (379)
Q Consensus 169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~ 247 (379)
.+++.++=-=..+ +.+++.+++..++++.+++. ..+-+||++.+ ++++|=++..||...
T Consensus 66 ~~~V~diMtpr~~-i~~l~~~~sl~e~~~~i~~~--~~sr~PV~~~~~d~iiGiv~~kDll~~----------------- 125 (292)
T PRK15094 66 DQRVRDIMIPRSQ-MITLKRNQTLDECLDVIIES--AHSRFPVISEDKDHIEGILMAKDLLPF----------------- 125 (292)
T ss_pred CCEEeEEccchHH-EEEEeCCCCHHHHHHHHHhc--CCcEEEEecCCCCcEEEEEEHHHHHhH-----------------
Confidence 4444443222236 99999999999999999876 44889999987 699999988777420
Q ss_pred hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297 248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY 327 (379)
Q Consensus 248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~ 327 (379)
...+.++..+ ++. . +.+++-.
T Consensus 126 --~~~~~~~~~l--------------------------------------~~l-----------------~--r~~~~V~ 146 (292)
T PRK15094 126 --MRSDAEAFSM--------------------------------------DKV-----------------L--RQAVVVP 146 (292)
T ss_pred --hhccCCcCCH--------------------------------------HHH-----------------c--CCCcCcC
Confidence 0000000000 000 0 1245677
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297 328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK 365 (379)
Q Consensus 328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~ 365 (379)
+..+|..++.++..++.|.+=|+|+.|...|+|..+--
T Consensus 147 e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDI 184 (292)
T PRK15094 147 ESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDI 184 (292)
T ss_pred CCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHH
Confidence 78899999999999999999999999999999987643
No 170
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.69 E-value=0.086 Score=41.42 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=73.4
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
+..+..+.+..+|+..|.+. ..+.++|++.+|+++|-++..+|..... +. + +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~g~v~~~~l~~~~~------------------~~--~---~--- 54 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEY--KVSGVPVVKKSGELVGIITRKDLLRNPE------------------EE--Q---L--- 54 (106)
T ss_pred cEEECCCCCHHHHHHHHHHc--CCCeEEEEcCCCcEEEEEEHHHHHhccc------------------cc--h---H---
Confidence 77888899999999999764 3367999999999999998777643100 00 0 0
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
+.. -...+++..+..+|.+++..+..+
T Consensus 55 -----------------------~~~------------------------------~~~~~~~v~~~~~l~~~~~~~~~~ 81 (106)
T cd04638 55 -----------------------ALL------------------------------MTRDPPTVSPDDDVKEAAKLMVEN 81 (106)
T ss_pred -----------------------HHH------------------------------hcCCCceECCCCCHHHHHHHHHHc
Confidence 000 012356778889999999999999
Q ss_pred CCcEEEEeeCCCCcccceEee
Q 041297 343 RDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~ 363 (379)
+.+++=|+|. |.++|+++..
T Consensus 82 ~~~~~~Vvd~-~~~~G~it~~ 101 (106)
T cd04638 82 NIRRVPVVDD-GKLVGIVTVA 101 (106)
T ss_pred CCCEEEEEEC-CEEEEEEEHH
Confidence 9999999995 7889999853
No 171
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=95.48 E-value=0.08 Score=54.21 Aligned_cols=120 Identities=17% Similarity=0.209 Sum_probs=92.4
Q ss_pred ccccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc------
Q 041297 12 HWCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP------ 85 (379)
Q Consensus 12 ~~~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~------ 85 (379)
.|-+-+.+++..++.+|+..+...++.++||=..++. -+|+.+..|+. |+++
T Consensus 235 ~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~---------------------~v~~~s~~Dv~-~l~~~~~~~~ 292 (381)
T KOG1764|consen 235 TWSNIASISEDTPVIEALKIMSERRISALPVVDENGK---------------------KVGNYSRFDVI-HLAREGTYNN 292 (381)
T ss_pred hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCc---------------------eecceehhhhh-hhhhcCccCc
Confidence 5777788999999999999999999999999885542 38999999975 4442
Q ss_pred -----ccccccCC---CCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHH
Q 041297 86 -----CFCSFAKD---SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 156 (379)
Q Consensus 86 -----VS~li~~~---~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRF 156 (379)
++....+- -+-+.+..|+.||-+.|+.|. ..+||+.|+++..+- +=.+|=.||+.|
T Consensus 293 ~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l---------------~GvvSLsDil~~ 357 (381)
T KOG1764|consen 293 LDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVL---------------VGVISLSDILSY 357 (381)
T ss_pred cchhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcE---------------EEEeeHHHHHHH
Confidence 44444332 223999999999999999999 799999998873221 118899999999
Q ss_pred HHhhhcccCCCC
Q 041297 157 FLNFIGLLNPTP 168 (379)
Q Consensus 157 Ll~~ig~l~p~p 168 (379)
+.-+-....|-+
T Consensus 358 l~~~p~~~~~~~ 369 (381)
T KOG1764|consen 358 LVLTPSGGTPDA 369 (381)
T ss_pred HHhCccCCCCCC
Confidence 988754444433
No 172
>PRK11573 hypothetical protein; Provisional
Probab=95.24 E-value=0.064 Score=55.14 Aligned_cols=144 Identities=8% Similarity=0.015 Sum_probs=98.1
Q ss_pred ccccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----c
Q 041297 12 HWCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-----C 86 (379)
Q Consensus 12 ~~~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-----V 86 (379)
++.|=.+++...|++++++.+++++-+-+||+..+ ..+++|+|..=|++.++.+ .
T Consensus 195 Pr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~--------------------~D~IiGiv~~kDll~~~~~~~~~~~ 254 (413)
T PRK11573 195 PRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS--------------------LDDAISMLRVREAYRLMTEKKEFTK 254 (413)
T ss_pred ccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC--------------------CCceEEEEEHHHHHHHhhccCcCCH
Confidence 45577788899999999999999999999998732 2469999999999876542 1
Q ss_pred cccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-cc
Q 041297 87 FCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-LL 164 (379)
Q Consensus 87 S~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-~l 164 (379)
.++..-. -....|..++++.+.++.|. ++.|=++|+++...- .. .+|.|||+.-+.|-|. ++
T Consensus 255 ~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~---------~G------iVTleDilEeivGei~de~ 318 (413)
T PRK11573 255 ENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDI---------QG------LVTVEDILEEIVGDFTTSM 318 (413)
T ss_pred HHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCe---------EE------EeeHHHHHHHHhCCCCccc
Confidence 1221111 23577999999999999999 566777778763321 11 9999999999998763 33
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcH
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFA 195 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~A 195 (379)
.+-....+.. +..+ .+-|+...+.-+.
T Consensus 319 d~~~~~~i~~---~~~~-~~~v~G~~~l~d~ 345 (413)
T PRK11573 319 SPTLAEEVTP---QNDG-SVIIDGTANVREI 345 (413)
T ss_pred CcccccceEE---ecCC-EEEEEeeeEHHHH
Confidence 2211111211 1233 5666666665443
No 173
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=94.83 E-value=0.088 Score=53.51 Aligned_cols=101 Identities=11% Similarity=0.150 Sum_probs=70.2
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------c
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------C 86 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------V 86 (379)
+-+++....|+.+|++.+.+++...+||-+. ..+++|+|+.-|+...+.+ |
T Consensus 344 ~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---------------------~~~~~Givt~~dl~~~~~~~~~~~~~~v 402 (454)
T TIGR01137 344 APVTVHPTETVGDAIEILREYGFDQLPVVTE---------------------AGKVLGSVTLRELLSALFAGKANPDDAV 402 (454)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---------------------CCeEEEEEEHHHHHHHHhccCCCcCCCH
Confidence 3456666777888887777777667777542 3579999999998864431 5
Q ss_pred cccccCCCCceEEeCCCCchhHHHHHHhcCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHH
Q 041297 87 FCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYF 157 (379)
Q Consensus 87 S~li~~~~gll~~V~P~tsLLdAie~m~~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFL 157 (379)
.++.. ..+..|+|++++.|+++.|.+. +.++|.+++ ..- ++|+.||+++|
T Consensus 403 ~~im~---~~~~~v~~~~~l~~a~~~~~~~-~~~vV~~~g~liG-----------------vvt~~dll~~l 453 (454)
T TIGR01137 403 SKVMS---KKFIQIGEGEKLSDLSKFLEKN-SSAIVTEEGKPIG-----------------VVTKIDLLSFL 453 (454)
T ss_pred HHhcC---CCCeEECCcCcHHHHHHHHHHC-CeeEEEECCEEEE-----------------EEEHHHHHHhh
Confidence 55543 2356799999999999999863 334444421 122 99999999986
No 174
>COG0517 FOG: CBS domain [General function prediction only]
Probab=94.82 E-value=0.12 Score=40.92 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=71.5
Q ss_pred ccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-------c
Q 041297 14 CDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-------C 86 (379)
Q Consensus 14 ~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-------V 86 (379)
.+-+++....|+.+|+..+.+.+...+||=+- .+++|+++.-||+.++.. +
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----------------------~~l~Giit~~di~~~~~~~~~~~~~v 64 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD----------------------GKLVGIITERDILRALAAGGKRLLPV 64 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----------------------CEEEEEEEHHHHHHHHhccCCccccH
Confidence 34567788899999999999999888888662 279999999999998873 2
Q ss_pred cccccCCCCceEEeCCCCchhHHHHHHhc--CccEEEEecCC
Q 041297 87 FCSFAKDSGIVRHLKPSASLLEAVDLLLG--GVQNLVILPAG 126 (379)
Q Consensus 87 S~li~~~~gll~~V~P~tsLLdAie~m~~--G~~rllVi~s~ 126 (379)
..+.. ..+..+.|++++.++++.|.+ ++.++.|++..
T Consensus 65 ~~v~~---~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~ 103 (117)
T COG0517 65 KEVMT---KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDD 103 (117)
T ss_pred HHhcc---CCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC
Confidence 33333 257899999999999999997 79999997654
No 175
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=94.20 E-value=0.2 Score=50.82 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=84.5
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------- 85 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------- 85 (379)
|-++.....|+.||.+-|.+.+.-++||-+- ..+.+|+|+--|.+-+--.
T Consensus 254 dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~---------------------~~rl~GiVt~~dl~~~a~~~p~qrlr~~ 312 (382)
T COG3448 254 DVVTVSTDTSIDHARKLLQEHRIKALPVLDE---------------------HRRLVGIVTQRDLLKHARPSPFQRLRFL 312 (382)
T ss_pred cceecCCcCChHHHHHHHHHcCccccccccc---------------------ccceeeeeeHHHHhhccCcchHHHhhcc
Confidence 5677788899999999999999999999872 3579999999998874431
Q ss_pred ----ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhh
Q 041297 86 ----CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNF 160 (379)
Q Consensus 86 ----VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ 160 (379)
|-.+.. ..+.++.|.|+..|.+-++. .|-|.+.|++...|-.+ .+||.|++--|...
T Consensus 313 ~~~~vk~imt---~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvG---------------IvsQtDliaal~r~ 374 (382)
T COG3448 313 RPPTVKGIMT---TPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVG---------------IVSQTDLIAALYRN 374 (382)
T ss_pred CCCccccccc---CcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEE---------------EeeHHHHHHHHHHH
Confidence 333332 45899999999999999999 57777777887655422 89999999877653
No 176
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=94.07 E-value=0.23 Score=51.11 Aligned_cols=113 Identities=15% Similarity=0.051 Sum_probs=89.2
Q ss_pred cccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccccc-cccc
Q 041297 13 WCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCPCF-CSFA 91 (379)
Q Consensus 13 ~~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~VS-~li~ 91 (379)
+-|=++++...|++++...+++++-+-+||.+ .. ...+||+|..=|++.++.+-- ....
T Consensus 215 R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~-------------------~D~iiGiv~~Kdll~~~~~~~~~~~~ 274 (429)
T COG1253 215 RTDIVALDLTDTVEELIELILESGHSRIPVYD-GD-------------------LDNIIGIVHVKDLLRALLDGQSDLDL 274 (429)
T ss_pred cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CC-------------------CCcEEEEEEHHHHHHHHhcCccccch
Confidence 55667788899999999999999999999999 32 347999999999999888421 1222
Q ss_pred C-CCCceEEeCCCCchhHHHHHHh-cCccEEEEecCC--cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc
Q 041297 92 K-DSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAG--IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG 162 (379)
Q Consensus 92 ~-~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~--~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig 162 (379)
+ .-.....|.+.+++.++++.|. +..|=++|+++- ... ++|.|||+.-+.|-|.
T Consensus 275 ~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~G-----------------lVTleDIiEeIvGei~ 332 (429)
T COG1253 275 RVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEG-----------------LVTLEDIIEEIVGEIP 332 (429)
T ss_pred hhcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEE-----------------EeEHHHHHHHHhCCCc
Confidence 1 1115788999999999999999 578878888864 233 9999999999988554
No 177
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=94.07 E-value=0.13 Score=55.50 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=78.8
Q ss_pred ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------cc
Q 041297 16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------CF 87 (379)
Q Consensus 16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------VS 87 (379)
-+++.-.+|+.||...+++.++.++-+-..++ .-.|+|+-=|..-.+-. ||
T Consensus 159 ~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~---------------------~~~GIvT~~dl~~~v~~~g~~~~~~V~ 217 (610)
T COG2905 159 AVTVSPQASIQDAARKMKDEGVSSLVVLDDSG---------------------PLLGIVTRKDLRSRVIADGRSKTQKVS 217 (610)
T ss_pred CcccCccCcHHHHHHHHHhcCCCeEEEEcCCC---------------------CccceeehHHHHHHHHhcCCCcccchh
Confidence 35666778999999999999988666666433 35689988887765442 77
Q ss_pred ccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecC-CcccCCCCCCcccccCCcceEEeeHHHHHHHHH
Q 041297 88 CSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPA-GIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFL 158 (379)
Q Consensus 88 ~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s-~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl 158 (379)
.+.- +++++|++++=+.|||=+|+ +++|||+|.+. +.-. +||-.||+|-+-
T Consensus 218 evmT---~p~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~G-----------------ilt~~dIl~l~s 270 (610)
T COG2905 218 EVMT---SPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLG-----------------ILTLTDILRLFS 270 (610)
T ss_pred hhhc---cCceeecCcchHHHHHHHHHHhCCceeeeecCCeeeE-----------------EeeHHHHHHhhC
Confidence 7665 67999999999999999999 89999999554 3333 777788877664
No 178
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.06 E-value=0.34 Score=49.17 Aligned_cols=107 Identities=13% Similarity=0.090 Sum_probs=75.2
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRL 262 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~ 262 (379)
......+.++.++++.|... ......|+|.++++.|.++..++.. |...+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~-------------------~~~~~~~------- 303 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDE--RVDSLYVVDRQNKLVGVVDVESIKQ-------------------ARKKAQG------- 303 (363)
T ss_pred ceeecCCCCHHHHHHHHHhc--CCceEEEEcCCCCEEEEEeHHHHHH-------------------HhhcCCc-------
Confidence 34556677888999999765 4478899999999999998766543 1111000
Q ss_pred HHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHc
Q 041297 263 VKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALAR 342 (379)
Q Consensus 263 v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaH 342 (379)
. ++. -.....+-.+..+|.+++..++.|
T Consensus 304 -------------------------~---------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 331 (363)
T TIGR01186 304 -------------------------L---------QDV------------------LIDDIYTVDAGTLLRETVRKVLKA 331 (363)
T ss_pred -------------------------h---------hhh------------------hccCCceECCCCcHHHHHHHHHhC
Confidence 0 000 001123457889999999999999
Q ss_pred CCcEEEEeeCCCCcccceEeehhhHHHH
Q 041297 343 RDRLRSMAKAENPNFCPVRIQAKKQQLS 370 (379)
Q Consensus 343 RV~~vWVvd~e~~l~~~v~~~~~~~~~~ 370 (379)
... +-|+|++|.++|+|.-+.--+.|.
T Consensus 332 ~~~-~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 332 GIK-VPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred CCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 999 999999999999998765544443
No 179
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=93.53 E-value=0.074 Score=49.61 Aligned_cols=69 Identities=14% Similarity=0.316 Sum_probs=54.2
Q ss_pred eHHHHHHHHHhhhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 149 TQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 149 TQeDVvRFLl~~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
|---|+|+|.+|-+ .-|.-=.+-+.+ |+++.+++..++|+++|+.. .-+-+||++. ||+||.|+-.++.
T Consensus 49 t~k~Il~aL~e~e~-------~~ita~~iM~sp-vv~v~pdDsi~~vv~lM~~~--g~SQlPVi~~-~k~VGsItE~~iv 117 (187)
T COG3620 49 TVKRILEALEEAEK-------TRITAKTIMHSP-VVSVSPDDSISDVVNLMRDK--GISQLPVIEE-DKVVGSITENDIV 117 (187)
T ss_pred HHHHHHHHHHHhhc-------ceEeHhhhccCC-eeEECchhhHHHHHHHHHHc--CCccCceeeC-CeeeeeecHHHHH
Confidence 45568888888766 222223346778 99999999999999999986 4488999998 9999999866653
No 180
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=93.26 E-value=0.73 Score=47.44 Aligned_cols=101 Identities=9% Similarity=0.035 Sum_probs=70.8
Q ss_pred EecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHH
Q 041297 186 IHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQ 265 (379)
Q Consensus 186 V~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~ 265 (379)
...+.+.-+|++.|... ....+.|||.+|+++|.++..+|.. +.+.+.+.++
T Consensus 290 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~-------------------~~~~~~~~~~------- 341 (400)
T PRK10070 290 KTPGFGPRSALKLLQDE--DREYGYVIERGNKFVGAVSIDSLKT-------------------ALTQQQGLDA------- 341 (400)
T ss_pred cCCCCCHHHHHHHHHhc--CCceEEEEcCCCcEEEEEeHHHHHh-------------------hhhcCCchhh-------
Confidence 34666788899999775 4578999999999999998777643 0010000000
Q ss_pred HhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCc
Q 041297 266 RLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDR 345 (379)
Q Consensus 266 ~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~ 345 (379)
. -..+..+-.+..+|.+++..++.+...
T Consensus 342 ------------~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (400)
T PRK10070 342 ------------A----------------------------------------LIDAPLAVDAQTPLSELLSHVGQAPCA 369 (400)
T ss_pred ------------h----------------------------------------hccCCceeCCCCCHHHHHHHHHhCCCc
Confidence 0 001124566788999999999997766
Q ss_pred EEEEeeCCCCcccceEeehhhH
Q 041297 346 LRSMAKAENPNFCPVRIQAKKQ 367 (379)
Q Consensus 346 ~vWVvd~e~~l~~~v~~~~~~~ 367 (379)
+.|||++|.++|+|+...--+
T Consensus 370 -~~v~~~~~~~~g~~~~~~~~~ 390 (400)
T PRK10070 370 -VPVVDEDQQYVGIISKGMLLR 390 (400)
T ss_pred -EEEECCCCcEEEEEEHHHHHH
Confidence 999999999999998654333
No 181
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=90.05 E-value=1.4 Score=47.96 Aligned_cols=160 Identities=18% Similarity=0.287 Sum_probs=98.2
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
..+|+|.+|+-||-..|. .|+--++|++...+. .+ ++|+.|+.++.+-..- |. ..+|++
T Consensus 159 ~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~----------~G-----IvT~~dl~~~v~~~g~---~~-~~~V~e- 218 (610)
T COG2905 159 AVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPL----------LG-----IVTRKDLRSRVIADGR---SK-TQKVSE- 218 (610)
T ss_pred CcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCc----------cc-----eeehHHHHHHHHhcCC---Cc-ccchhh-
Confidence 578999999999988888 799966667743322 01 9999999999876322 00 122222
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCC---c----------HHHHHHHH---
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSC---D----------ETVAAAIA--- 239 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~C---D----------et~a~A~a--- 239 (379)
+-..+ +++|++++.+-+|+=+|.+- ...=+||.+ ||+++|=++.+|+-.- + .+....++
T Consensus 219 -vmT~p-~~svd~~~~~feAml~m~r~--~I~hl~V~e-~gq~~Gilt~~dIl~l~s~~~~vl~~~i~~a~sI~el~~~~ 293 (610)
T COG2905 219 -VMTSP-VISVDRGDFLFEAMLMMLRN--RIKHLPVTE-DGQPLGILTLTDILRLFSQNSIVLVKRIARASSIEELANTA 293 (610)
T ss_pred -hhccC-ceeecCcchHHHHHHHHHHh--CCceeeeec-CCeeeEEeeHHHHHHhhCCCceeehHHhhhhhhHHHHHHHH
Confidence 23445 99999999999998888653 456777664 7889998888775211 1 01111111
Q ss_pred hcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhcc
Q 041297 240 TLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDD 282 (379)
Q Consensus 240 tLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~ 282 (379)
.+=.--+...++.|-+++.+.+++-+ +.++-.+..+++...+
T Consensus 294 e~~~~~~s~L~~~gv~~~~i~~lit~-i~d~lv~r~leL~~~~ 335 (610)
T COG2905 294 ELLDDSLSTLVSRGVRTEFISELITE-INDQLVQRALELVEPE 335 (610)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHHHHHHHHHhhhh
Confidence 11111233345666688888777542 3333334444555444
No 182
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=89.86 E-value=0.41 Score=31.03 Aligned_cols=44 Identities=27% Similarity=0.433 Sum_probs=36.2
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+..+..+++..+++..|++. ....++|++++|+++|=++..+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~g~i~~~~l~ 45 (49)
T smart00116 2 VVTVSPDTTLEEALELLREH--GIRRLPVVDEEGRLVGIVTRRDII 45 (49)
T ss_pred ceEecCCCcHHHHHHHHHHh--CCCcccEECCCCeEEEEEEHHHHH
Confidence 46678899999999999765 447899999999999999876663
No 183
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=86.62 E-value=1.6 Score=40.97 Aligned_cols=105 Identities=23% Similarity=0.389 Sum_probs=75.2
Q ss_pred CCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcc
Q 041297 94 SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPI 172 (379)
Q Consensus 94 ~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI 172 (379)
...+.++.|.-|+.+++++|- +|+--+.|+++. |-++ =+|.-||+|-+++.- .+|
T Consensus 72 ~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~-k~VG---------------sItE~~iv~~~le~~--------e~i 127 (187)
T COG3620 72 HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEED-KVVG---------------SITENDIVRALLEGM--------ESI 127 (187)
T ss_pred cCCeeEECchhhHHHHHHHHHHcCCccCceeeCC-eeee---------------eecHHHHHHHHhccc--------cch
Confidence 367899999999999999999 799999998762 1111 367789999998753 344
Q ss_pred ccccccc--CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 173 NSHNIID--DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 173 ~sLG~I~--~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
.+|-.-. .+.+-.|..+.+. ..+.+.+....||=|+ .+|++||=|.-+|.
T Consensus 128 ~~~~vr~vM~e~fP~Vs~~~~l----~vI~~LL~~~~AVlV~-e~G~~vGIITk~DI 179 (187)
T COG3620 128 RSLRVREVMGEPFPTVSPDESL----NVISQLLEEHPAVLVV-ENGKVVGIITKADI 179 (187)
T ss_pred hhhhHHHHhcCCCCcCCCCCCH----HHHHHHHhhCCeEEEE-eCCceEEEEeHHHH
Confidence 4444322 3315556666664 4556656677899998 89999999876554
No 184
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=83.86 E-value=1.6 Score=35.78 Aligned_cols=42 Identities=7% Similarity=0.059 Sum_probs=38.3
Q ss_pred cceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 322 EAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 322 ~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
++.+..+..+|.+++..+..++...+=|+|++|.++|+|+..
T Consensus 67 ~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~ 108 (113)
T cd04597 67 KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLL 108 (113)
T ss_pred CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHH
Confidence 467889999999999999999999999999999999999865
No 185
>PRK11573 hypothetical protein; Provisional
Probab=79.26 E-value=11 Score=39.14 Aligned_cols=116 Identities=11% Similarity=0.072 Sum_probs=77.0
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL 164 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l 164 (379)
|.++.-+ ..-+..++-++++-|+++.+. .|--|+.|.+....++- =++.--|++.++.+. ..
T Consensus 189 v~eiMtP-r~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~Ii--------------Giv~~kDll~~~~~~-~~- 251 (413)
T PRK11573 189 VDDIMVP-RNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAI--------------SMLRVREAYRLMTEK-KE- 251 (413)
T ss_pred hhhcCCc-cceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceE--------------EEEEHHHHHHHhhcc-Cc-
Confidence 5555532 246888999999999999998 69999999765554411 166777888765431 11
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeE-EEcCCCcEEeeeCcccc
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVA-IVDEEGRLVGDISPFSL 227 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVA-VVd~dGkLIGeISa~~L 227 (379)
.++.++.-+-++ .+.|+.++++.++++.|++. ..-.| |||..|..+|=++..|+
T Consensus 252 -----~~~~~l~~~~r~-~~~Vpe~~~l~~lL~~~~~~---~~~~AiVvDEyG~~~GiVTleDi 306 (413)
T PRK11573 252 -----FTKENMLRAADE-IYFVPEGTPLSTQLVKFQRN---KKKVGLVVDEYGDIQGLVTVEDI 306 (413)
T ss_pred -----CCHHHHHhhccC-CeEeCCCCcHHHHHHHHHhc---CCeEEEEEecCCCeEEEeeHHHH
Confidence 123333323345 78999999999999999884 44556 56776755555544443
No 186
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=77.09 E-value=2.5 Score=44.68 Aligned_cols=49 Identities=24% Similarity=0.401 Sum_probs=42.9
Q ss_pred cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+.+++ +..|+++++-.++-+++++- +..++||||.+|+|||.|.-.|.-
T Consensus 201 im~~~-~~~V~~~~dqeevA~~~~~y--dl~a~PVVd~~~~LiG~itiDDii 249 (451)
T COG2239 201 LMEDD-VVSVLADDDQEEVARLFEKY--DLLAVPVVDEDNRLIGIITIDDII 249 (451)
T ss_pred Hhccc-ceeecccCCHHHHHHHHHHh--CCeecceECCCCceeeeeeHHHHH
Confidence 35666 99999999999999999996 669999999999999999876653
No 187
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=76.81 E-value=11 Score=39.90 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=48.6
Q ss_pred ccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccc---cCceeEEEcCCCcEEeeeCccccC
Q 041297 163 LLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHI---KQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 163 ~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~---~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+-+.|-.|... +.+++ ++++..+.++-+|+..+|+--. ....+=|||.++||+|-+|..+|-
T Consensus 125 ~~l~y~e~taG~--~Mt~e-~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll 190 (451)
T COG2239 125 QLLSYPEDTAGR--IMTTE-FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLL 190 (451)
T ss_pred HhcCCChhhhhc--cceee-eEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHh
Confidence 333444444443 47788 9999999999999999986443 235799999999999999988874
No 188
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=71.40 E-value=29 Score=35.93 Aligned_cols=106 Identities=17% Similarity=0.179 Sum_probs=74.2
Q ss_pred CceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297 95 GIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN 173 (379)
Q Consensus 95 gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~ 173 (379)
.-+..++-+.++-++++.+. .|-.|+.|.+....+.- . ++.-.|+++.+...-. .+.....+.
T Consensus 216 ~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~ii--------G------iv~~Kdll~~~~~~~~--~~~~~~~~~ 279 (429)
T COG1253 216 TDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNII--------G------IVHVKDLLRALLDGQS--DLDLRVLVR 279 (429)
T ss_pred ccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEE--------E------EEEHHHHHHHHhcCcc--ccchhhccc
Confidence 44677888999999999996 79899999774444411 1 6677788888776432 222222222
Q ss_pred ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEE-EcCCCcEEeeeCcccc
Q 041297 174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAI-VDEEGRLVGDISPFSL 227 (379)
Q Consensus 174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAV-Vd~dGkLIGeISa~~L 227 (379)
+ .+.|+..+++.++++-||+. .+-.|| ||+-|...|=++..|+
T Consensus 280 -------~-~~~Vpet~~~~~lL~~~r~~---~~hmAiVvDEyG~~~GlVTleDI 323 (429)
T COG1253 280 -------P-PLFVPETLSLSDLLEEFREE---RTHMAIVVDEYGGVEGLVTLEDI 323 (429)
T ss_pred -------C-CeEecCCCcHHHHHHHHHHh---CCeEEEEEEcCCCeEEEeEHHHH
Confidence 5 89999999999999999984 344555 4667877777766665
No 189
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=66.78 E-value=4.6 Score=41.48 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=36.1
Q ss_pred cCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 179 DDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 179 ~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
.++ +..|+.++|..++++.+.. ....+||||. |+++|.|+..+|
T Consensus 332 ~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~-~~~~g~~~~~~~ 375 (382)
T TIGR03415 332 EAA-PTVINPDTLMRDVLAARHR---TGGAILLVEN-GRIVGVIGDDNI 375 (382)
T ss_pred ccc-CcccCCCCcHHHHHHHHhc---CCCCeEEeeC-CeEEEEEeHHHH
Confidence 345 7889999999999887765 4467999996 999999987765
No 190
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=63.87 E-value=4.1 Score=42.14 Aligned_cols=43 Identities=40% Similarity=0.504 Sum_probs=34.9
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+.+|..+++..+-+..+++ .+..+||||.+|+++|-|+...+-
T Consensus 337 ~~~v~~d~~~~~~~~~~~~---~~~p~aVvde~~r~vG~i~~~~vl 379 (386)
T COG4175 337 VLTVDADTPLSEILARIRQ---APCPVAVVDEDGRYVGIISRGELL 379 (386)
T ss_pred ccccCccchHHHHHHHHhc---CCCceeEEcCCCcEEEEecHHHHH
Confidence 6778888888777777765 567999999999999999876653
No 191
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=53.42 E-value=66 Score=33.92 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=79.0
Q ss_pred cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--ccccccCCC
Q 041297 17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--CFCSFAKDS 94 (379)
Q Consensus 17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--VS~li~~~~ 94 (379)
-.+-..-|++|=.+..++.+.+-.||-+- ....+|+|+|-|++-.--. +-.+.-+.
T Consensus 201 ~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---------------------~~kvvGvVt~rDv~~~~~~t~ieKVMtkn- 258 (432)
T COG4109 201 SYLRETDTVEDWLDLVEKTGHSRFPVVNR---------------------SMKVVGVVTMRDVLDKKPSTTIEKVMTKN- 258 (432)
T ss_pred eeccccccHHHHHHHHHHcCCCccceecc---------------------cceEEEEEEehhhhcCCCCccHHHHhccC-
Confidence 34555678899999999999999999872 3579999999999876552 33333322
Q ss_pred CceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHh
Q 041297 95 GIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN 159 (379)
Q Consensus 95 gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~ 159 (379)
-.+|.|.||+--+--+|. +|+.-+.|+++..+-. =++|+.|++.=|-.
T Consensus 259 --p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~ll---------------GiitR~dvlk~lq~ 307 (432)
T COG4109 259 --PITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLL---------------GIITRQDVLKSLQM 307 (432)
T ss_pred --CeeecccchHHHHHHHHHhccceeeeEEcCCceEE---------------EEEEHHHHHHHHHH
Confidence 357899999999999998 9999999988765431 18999999876654
No 192
>smart00594 UAS UAS domain.
Probab=44.54 E-value=73 Score=26.95 Aligned_cols=80 Identities=16% Similarity=0.060 Sum_probs=50.9
Q ss_pred CchhHHHHHHhcCccEEEE-ecCCcccCCCCCCcccccCCcceE--EeeHHHHHHHHHhhhcccCCCCCCcccccccccC
Q 041297 104 ASLLEAVDLLLGGVQNLVI-LPAGIKLQPKPSLKSTFHNDSEYC--WLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDD 180 (379)
Q Consensus 104 tsLLdAie~m~~G~~rllV-i~s~~k~~~~~s~~~~~~~~~~yC--~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~I~~ 180 (379)
.|+-+|++..++--+.++| +++.+-. .+..|| .|+..+|++||-+
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~-----------~c~~~~r~vl~~~~V~~~i~~--------------------- 61 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSP-----------DSQVFNRDVLCNEAVKSLIRE--------------------- 61 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCc-----------hHHHHHHHHccCHHHHHHHHc---------------------
Confidence 4788999999977778888 8886511 111122 6788889988753
Q ss_pred CcEEEEecCCchhcHHHHHHhccccC-ceeEEEcCCC
Q 041297 181 AGILAIHYDDPAAFAIPLIAQSHIKQ-TSVAIVDEEG 216 (379)
Q Consensus 181 ~~v~aV~~~~~A~~Ai~lm~~a~~~~-tAVAVVd~dG 216 (379)
+ ++.+..+..-.++.+++.+--.+. -.+++++++|
T Consensus 62 ~-fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 62 N-FIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred C-EEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCC
Confidence 3 555544444455666665532211 3588999976
No 193
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=33.17 E-value=1.7e+02 Score=23.95 Aligned_cols=86 Identities=12% Similarity=0.160 Sum_probs=50.6
Q ss_pred CchhHHHHHHhcCccEEEE-ecCCcccCCCCCCcccccCCcceE--EeeHHHHHHHHHhhhcccCCCCCCcccccccccC
Q 041297 104 ASLLEAVDLLLGGVQNLVI-LPAGIKLQPKPSLKSTFHNDSEYC--WLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDD 180 (379)
Q Consensus 104 tsLLdAie~m~~G~~rllV-i~s~~k~~~~~s~~~~~~~~~~yC--~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~I~~ 180 (379)
.++-+|++.-++-=+-++| +++.+-. .+..+| .|+.++|.+||-++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~-----------~c~~~~~~vl~~~~v~~~l~~~-------------------- 52 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEF-----------DSQVLNRDLWSNESVKEFIREN-------------------- 52 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcc-----------hHHHHHHHHcCCHHHHHHHHhC--------------------
Confidence 4667888888876666777 8876521 011222 67889999988743
Q ss_pred CcEEEEecCCchhcHHHHHHhccccC-ceeEEEcC-CCcEEeee
Q 041297 181 AGILAIHYDDPAAFAIPLIAQSHIKQ-TSVAIVDE-EGRLVGDI 222 (379)
Q Consensus 181 ~~v~aV~~~~~A~~Ai~lm~~a~~~~-tAVAVVd~-dGkLIGeI 222 (379)
++.+..+..-.++.++.+.--... -.+.++++ +|+++..+
T Consensus 53 --~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 53 --FIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred --EEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEE
Confidence 334433333234555555432211 25788899 89776543
No 194
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=32.68 E-value=62 Score=28.44 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=51.7
Q ss_pred CcceEEeeHHHHHHHHHh---hhcccCCCCCCcccccccccCCcEEEEecCCc---hhcHHHHHHhccccCceeEEEcC
Q 041297 142 DSEYCWLTQEDLIRYFLN---FIGLLNPTPNQPINSHNIIDDAGILAIHYDDP---AAFAIPLIAQSHIKQTSVAIVDE 214 (379)
Q Consensus 142 ~~~yC~LTQeDVvRFLl~---~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~---A~~Ai~lm~~a~~~~tAVAVVd~ 214 (379)
+.+|-.+|.||+-..=.. +|..++.++..+|...-.+.+. +|-++.+.. +..|+.++.+++....-|||+.-
T Consensus 16 G~~~V~~~~ee~~~~k~~~~~~l~ilgF~~~~~i~~~~~~~~s-~~i~P~~~~~~~s~~a~~aL~~am~~~~~~aiar~ 93 (140)
T smart00559 16 GGRYVPLSDEELEQLKYKSEPGLELLGFKPLSSLPPYYFLRPS-YFLVPDDKSVIGSTKAFSALVEALLETDKIAIARY 93 (140)
T ss_pred CCEEeccCHHHHHHhhccCCCeEEEEeecChHHCCHhHccCCc-EEEeeCCcccchhHHHHHHHHHHHHhcCCEEEEEE
Confidence 378889999887654322 6777888887777776666655 444443321 66789999999999999999854
No 195
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=31.60 E-value=67 Score=33.90 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=45.4
Q ss_pred ccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehhhHHHHHHH
Q 041297 321 SEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAKKQQLSRAV 373 (379)
Q Consensus 321 ~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~~~~~~~~~ 373 (379)
+-|+|-.+.+|++.|=..|+--...-+=|||++..|+|+|+=|---+.|...-
T Consensus 257 knp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q 309 (432)
T COG4109 257 KNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQ 309 (432)
T ss_pred cCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhc
Confidence 44899999999999999999999999999999999999999776555554443
No 196
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=28.09 E-value=70 Score=30.52 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=42.3
Q ss_pred hhcHHHHHHhccccC----ceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCC
Q 041297 192 AAFAIPLIAQSHIKQ----TSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRP 255 (379)
Q Consensus 192 A~~Ai~lm~~a~~~~----tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~p 255 (379)
.-+|.+.+++..-+. |||+++++++++.-+++.++.+- .+||..+.-.|++++.|
T Consensus 87 ~~eA~~~L~~lSG~~h~v~T~v~li~~~~~~~~~~~~t~V~F---------~~ls~~~I~~Yv~sgep 145 (193)
T COG0424 87 EEEAREMLRKLSGRTHQVYTGVALIDPGKRVQSEVEVTKVRF---------RTLSDEEIEAYVASGEP 145 (193)
T ss_pred HHHHHHHHHHhcCCeEEEEEEEEEEECCCeEEEEEEEEEEEE---------ccCCHHHHHHHHHcCCc
Confidence 347788777654332 79999999988888888888876 67888999999988654
No 197
>PRK05066 arginine repressor; Provisional
Probab=27.22 E-value=28 Score=31.86 Aligned_cols=45 Identities=2% Similarity=0.078 Sum_probs=34.4
Q ss_pred EeeHHHHHHHHHhh-hc-ccCCCCCCcccccccccC-----CcEEEEecCCc
Q 041297 147 WLTQEDLIRYFLNF-IG-LLNPTPNQPINSHNIIDD-----AGILAIHYDDP 191 (379)
Q Consensus 147 ~LTQeDVvRFLl~~-ig-~l~p~p~~SI~sLG~I~~-----~~v~aV~~~~~ 191 (379)
.=||||++++|.+. +. .=.++.++-|.+||++.- ..+|.+..+.+
T Consensus 23 I~tQeeL~~~L~~~Gi~~vTQATiSRDikeL~lvKv~~~~G~~~Y~l~~~~~ 74 (156)
T PRK05066 23 FGSQGEIVTALQEQGFDNINQSKVSRMLTKFGAVRTRNAKMEMVYCLPAELG 74 (156)
T ss_pred CCCHHHHHHHHHHCCCCeecHHHHHHHHHHcCCEEeeCCCCCEEEEeCCCCc
Confidence 56999999999986 44 456888999999999852 22677776554
No 198
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=26.99 E-value=45 Score=27.99 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=29.3
Q ss_pred Ccccccc----cccCccccHHHHHHHHHhcCCceeee
Q 041297 10 PMHWCDE----IALGQFIHRCHALLALKRLNESYINI 42 (379)
Q Consensus 10 ~~~~~~~----~~~~~~~tv~dAl~aL~~s~~~av~V 42 (379)
-|+|-|| ++|.+-+-+++|++...-|++..+.+
T Consensus 42 t~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~i 78 (83)
T cd06404 42 TLKWIDEEGDPCTISSQMELEEAFRLYELNKDSELNI 78 (83)
T ss_pred EEEEECCCCCceeecCHHHHHHHHHHHHhcCcccEEE
Confidence 4899988 99999999999999999999877655
No 199
>PRK04280 arginine repressor; Provisional
Probab=26.19 E-value=44 Score=30.22 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=34.4
Q ss_pred EeeHHHHHHHHHhh-hcccCCCCCCcccccccccC-----CcEEEEecCC
Q 041297 147 WLTQEDLIRYFLNF-IGLLNPTPNQPINSHNIIDD-----AGILAIHYDD 190 (379)
Q Consensus 147 ~LTQeDVvRFLl~~-ig~l~p~p~~SI~sLG~I~~-----~~v~aV~~~~ 190 (379)
.=||||+++.|... +..=.++.++-|.+||++.. ..+|+++.+.
T Consensus 18 I~tQeeL~~~L~~~Gi~vTQATiSRDikeL~lvKv~~~~G~~~Y~lp~~~ 67 (148)
T PRK04280 18 IETQDELVDRLREEGFNVTQATVSRDIKELHLVKVPLPDGRYKYSLPADQ 67 (148)
T ss_pred CCCHHHHHHHHHHcCCCeehHHHHHHHHHcCCEEeecCCCcEEEeecccc
Confidence 55999999999885 66667888999999999852 2267776554
No 200
>cd00789 KU_like Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.
Probab=24.03 E-value=80 Score=30.96 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=47.5
Q ss_pred cCCcceEEeeHHHHHHHHHh---hhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC
Q 041297 140 HNDSEYCWLTQEDLIRYFLN---FIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE 214 (379)
Q Consensus 140 ~~~~~yC~LTQeDVvRFLl~---~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~ 214 (379)
.+..+|--+|.||+-..=.. +|..++.++...|.-.-+ .+. | .+.++..+..|+.++++++....-|||+.-
T Consensus 65 yg~~~~V~~~~eel~~~~~~~~~~i~IlgFv~~~~I~~~y~-~~s-y-yl~P~~~~~kaf~~L~~Al~~~~kvaIar~ 139 (256)
T cd00789 65 YEKGEYVILTDEELEALPPESTRTIEIVDFVPLDEIDPIYF-DKP-Y-YLAPDKGGEKAYALLREALRDTGKVAIAKV 139 (256)
T ss_pred eCCCCEEEcCHHHHHhhccCCCCeEEEEeEeCHHHCCHhHc-CCC-E-EEecCCCcchHHHHHHHHHHHcCCEEEEEE
Confidence 34589999999996542221 445555555555544322 233 4 455666888999999999998888888753
No 201
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=22.77 E-value=84 Score=24.78 Aligned_cols=31 Identities=6% Similarity=-0.085 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 333 MAVIMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 333 vAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
.+.+.+.+...-+.+||.+.+|..+|.+.+.
T Consensus 32 ~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 32 PEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp HHHHHHHHCTCCCEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEEc
Confidence 4567888888779999999999999999987
No 202
>COG1438 ArgR Arginine repressor [Transcription]
Probab=21.94 E-value=29 Score=31.89 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=35.4
Q ss_pred EeeHHHHHHHHHhh-hcccCCCCCCccccccccc-----CCcEEEEecCCch
Q 041297 147 WLTQEDLIRYFLNF-IGLLNPTPNQPINSHNIID-----DAGILAIHYDDPA 192 (379)
Q Consensus 147 ~LTQeDVvRFLl~~-ig~l~p~p~~SI~sLG~I~-----~~~v~aV~~~~~A 192 (379)
.-|||++++.|.++ +..=.++.++-+.+||++. ..-+|.++.+...
T Consensus 20 i~TQ~Elv~~L~~~Gi~vTQaTvSRDlkelglvKv~~~~g~~~Y~l~~~~~~ 71 (150)
T COG1438 20 ISTQEELVELLQEEGIEVTQATVSRDLKELGLVKVRNEKGTYVYSLPAELGV 71 (150)
T ss_pred CCCHHHHHHHHHHcCCeEehHHHHHHHHHcCCEEecCCCCcEEEEeCCccCC
Confidence 66999999999996 5555688899999999986 2224777665544
No 203
>TIGR02772 Ku_bact Ku protein, prokaryotic. Members of this protein family are Ku proteins of non-homologous end joining (NHEJ) DNA repair in bacteria and in at least one member of the archaea (Archaeoglobus fulgidus). Most members are encoded by a gene adjacent to the gene for the DNA ligase that completes the repair. The NHEJ system is broadly but rather sparsely distributed, being present in about one fifth of the first 250 completed prokarytotic genomes. A few species (e.g. Archaeoglobus fulgidus and Bradyrhizobium japonicum) have multiple copies that appear to represent recent paralogous family expansion.
Probab=20.46 E-value=88 Score=30.70 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=51.1
Q ss_pred CCcceEEeeHHHHHHHHHh---hhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC
Q 041297 141 NDSEYCWLTQEDLIRYFLN---FIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE 214 (379)
Q Consensus 141 ~~~~yC~LTQeDVvRFLl~---~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~ 214 (379)
+..+|-.||.||+-..-.. +|..++.++...|.-.- .++. + .+.++..+..|+.++++++....-|||+.-
T Consensus 67 g~g~~V~~~~eel~~~~~~~~~~i~I~gFv~~~~i~~~y-~~~s-y-yl~P~~~~~~a~~~L~~Al~~~~kvaIar~ 140 (258)
T TIGR02772 67 DKGKYVIIEDEDIESLPPESTKTIEIEAFVDADEIDPIY-FDTP-Y-YLAPDKGGEKAYALLREALEDTGKVGIAKV 140 (258)
T ss_pred CCCCEEEcCHHHHHhhcccCCCeEEEEEEeCHHHCChhe-eCCC-E-EEccCCCchHHHHHHHHHHHHcCCEEEEEE
Confidence 4568999999998765432 56666666666666553 3444 4 444567888999999999998888888753
Done!