Query 041297
Match_columns 379
No_of_seqs 79 out of 81
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 09:21:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t4n_C Nuclear protein SNF4; C 99.9 4.7E-23 1.6E-27 191.0 14.8 251 15-364 41-313 (323)
2 2qrd_G Protein C1556.08C; AMPK 99.8 2.1E-20 7.4E-25 173.9 12.3 250 15-364 33-308 (334)
3 2v8q_E 5'-AMP-activated protei 99.8 1E-19 3.5E-24 169.4 12.5 247 13-363 44-315 (330)
4 2yzq_A Putative uncharacterize 99.8 4.2E-18 1.4E-22 153.8 14.9 257 15-362 10-270 (282)
5 3kh5_A Protein MJ1225; AMPK, A 99.8 9.6E-18 3.3E-22 150.5 14.9 238 15-363 13-273 (280)
6 3ddj_A CBS domain-containing p 99.7 1.2E-17 4.1E-22 152.9 12.7 237 15-370 29-284 (296)
7 3ddj_A CBS domain-containing p 99.3 4.7E-12 1.6E-16 115.8 7.4 171 15-229 102-281 (296)
8 3kh5_A Protein MJ1225; AMPK, A 99.2 1.3E-11 4.5E-16 110.6 7.2 168 15-228 93-276 (280)
9 3t4n_C Nuclear protein SNF4; C 99.1 2.3E-10 7.9E-15 105.8 10.1 174 16-228 124-315 (323)
10 2yzq_A Putative uncharacterize 99.1 1.3E-10 4.6E-15 104.7 8.2 169 16-228 70-274 (282)
11 2v8q_E 5'-AMP-activated protei 99.1 6.9E-10 2.4E-14 103.2 11.3 196 86-363 37-243 (330)
12 4esy_A CBS domain containing m 99.1 8.5E-10 2.9E-14 94.1 10.9 137 170-363 18-154 (170)
13 2nyc_A Nuclear protein SNF4; b 99.0 5.3E-10 1.8E-14 90.8 6.1 129 168-364 6-134 (144)
14 2qrd_G Protein C1556.08C; AMPK 98.9 3.5E-09 1.2E-13 98.3 9.1 171 17-228 120-310 (334)
15 3sl7_A CBS domain-containing p 98.7 1.1E-08 3.8E-13 86.2 6.4 137 181-366 15-151 (180)
16 2uv4_A 5'-AMP-activated protei 98.7 3.1E-09 1.1E-13 88.6 2.1 113 180-363 29-143 (152)
17 3kpb_A Uncharacterized protein 98.7 2E-08 7E-13 79.6 6.5 107 178-364 7-113 (122)
18 3fhm_A Uncharacterized protein 98.7 1.1E-08 3.7E-13 86.6 5.0 133 156-364 10-143 (165)
19 2yzi_A Hypothetical protein PH 98.7 7E-09 2.4E-13 84.3 3.5 117 169-365 6-123 (138)
20 4esy_A CBS domain containing m 98.7 2.1E-08 7.2E-13 85.4 5.7 106 15-160 27-163 (170)
21 4gqw_A CBS domain-containing p 98.6 5.7E-08 2E-12 79.2 7.4 121 181-364 16-136 (152)
22 3lv9_A Putative transporter; C 98.6 1.6E-07 5.4E-12 77.7 9.4 115 86-228 25-140 (148)
23 3nqr_A Magnesium and cobalt ef 98.6 7E-08 2.4E-12 78.1 7.1 103 183-363 15-118 (127)
24 3i8n_A Uncharacterized protein 98.6 4.1E-08 1.4E-12 79.7 5.6 117 169-364 5-122 (130)
25 3kpb_A Uncharacterized protein 98.6 9.6E-08 3.3E-12 75.7 7.2 104 97-228 11-115 (122)
26 2rih_A Conserved protein with 98.6 1.9E-07 6.6E-12 76.4 9.2 109 96-229 14-124 (141)
27 2ef7_A Hypothetical protein ST 98.6 1.6E-07 5.4E-12 75.8 8.3 116 170-365 4-119 (133)
28 3ctu_A CBS domain protein; str 98.6 4.9E-08 1.7E-12 81.2 5.2 121 86-229 17-138 (156)
29 1pvm_A Conserved hypothetical 98.6 5.6E-08 1.9E-12 83.8 5.3 118 170-364 9-126 (184)
30 3lv9_A Putative transporter; C 98.5 1.1E-07 3.8E-12 78.6 6.8 117 168-364 21-138 (148)
31 2ef7_A Hypothetical protein ST 98.5 1.6E-07 5.6E-12 75.7 7.6 106 97-228 14-120 (133)
32 3jtf_A Magnesium and cobalt ef 98.5 4.4E-07 1.5E-11 73.7 10.1 108 15-161 16-128 (129)
33 3lhh_A CBS domain protein; str 98.5 1.7E-07 5.8E-12 80.3 7.9 119 167-365 39-158 (172)
34 3fhm_A Uncharacterized protein 98.5 1.7E-07 5.7E-12 79.3 7.7 119 86-228 26-145 (165)
35 3oi8_A Uncharacterized protein 98.5 2E-07 6.7E-12 78.5 8.1 115 169-363 37-152 (156)
36 2rih_A Conserved protein with 98.5 3E-07 1E-11 75.3 8.6 114 170-363 5-120 (141)
37 2o16_A Acetoin utilization pro 98.5 2.3E-07 7.9E-12 78.2 8.1 112 97-229 15-131 (160)
38 1o50_A CBS domain-containing p 98.5 2.2E-07 7.5E-12 77.7 7.8 125 177-364 21-146 (157)
39 2p9m_A Hypothetical protein MJ 98.5 1.3E-07 4.5E-12 76.5 6.0 117 169-364 7-129 (138)
40 3i8n_A Uncharacterized protein 98.5 1.3E-07 4.6E-12 76.7 6.0 116 86-228 8-124 (130)
41 2p9m_A Hypothetical protein MJ 98.5 1.4E-07 4.9E-12 76.3 6.1 115 86-228 10-131 (138)
42 3oco_A Hemolysin-like protein 98.5 4.2E-07 1.4E-11 75.9 9.0 115 86-228 22-138 (153)
43 2uv4_A 5'-AMP-activated protei 98.5 2.8E-07 9.7E-12 76.7 7.9 110 97-227 31-145 (152)
44 3k6e_A CBS domain protein; str 98.5 7.4E-08 2.5E-12 82.4 4.4 110 97-228 27-137 (156)
45 2o16_A Acetoin utilization pro 98.5 1.3E-07 4.3E-12 79.8 5.6 118 178-364 11-128 (160)
46 3k2v_A Putative D-arabinose 5- 98.5 1.5E-07 5.1E-12 78.1 5.7 136 147-363 7-144 (149)
47 1vr9_A CBS domain protein/ACT 98.5 7E-07 2.4E-11 79.6 10.5 116 165-364 8-123 (213)
48 4gqw_A CBS domain-containing p 98.5 8.8E-08 3E-12 78.1 4.2 123 86-229 7-139 (152)
49 3lqn_A CBS domain protein; csg 98.5 1.9E-07 6.5E-12 77.0 6.2 120 86-228 17-138 (150)
50 3lhh_A CBS domain protein; str 98.5 5.4E-07 1.9E-11 77.2 9.3 115 86-228 44-159 (172)
51 1pbj_A Hypothetical protein; s 98.5 3.5E-07 1.2E-11 72.5 7.5 109 178-364 7-115 (125)
52 2nyc_A Nuclear protein SNF4; b 98.5 2.7E-07 9.1E-12 74.8 6.9 111 97-228 21-136 (144)
53 3fv6_A YQZB protein; CBS domai 98.5 3E-07 1E-11 77.3 7.4 126 169-371 16-144 (159)
54 3jtf_A Magnesium and cobalt ef 98.4 5.6E-07 1.9E-11 73.1 8.4 104 180-364 15-119 (129)
55 3fv6_A YQZB protein; CBS domai 98.4 3.4E-07 1.2E-11 76.9 7.3 116 86-229 19-140 (159)
56 1y5h_A Hypothetical protein RV 98.4 8.8E-08 3E-12 77.3 3.5 116 169-363 7-123 (133)
57 2rc3_A CBS domain; in SITU pro 98.4 1.1E-07 3.6E-12 77.2 3.9 107 180-363 17-123 (135)
58 1o50_A CBS domain-containing p 98.4 4.6E-07 1.6E-11 75.8 7.7 118 86-228 18-148 (157)
59 3nqr_A Magnesium and cobalt ef 98.4 5.4E-07 1.8E-11 72.8 7.9 106 15-159 14-126 (127)
60 2pfi_A Chloride channel protei 98.4 3E-07 1E-11 76.3 6.5 122 86-228 15-142 (164)
61 1pbj_A Hypothetical protein; s 98.4 4.1E-07 1.4E-11 72.2 7.0 106 97-228 11-117 (125)
62 3hf7_A Uncharacterized CBS-dom 98.4 3E-07 1E-11 75.2 6.3 108 97-228 14-122 (130)
63 2emq_A Hypothetical conserved 98.4 3.2E-07 1.1E-11 76.0 6.4 120 86-228 13-134 (157)
64 2pfi_A Chloride channel protei 98.4 4.2E-07 1.4E-11 75.3 6.7 127 169-364 12-140 (164)
65 1pvm_A Conserved hypothetical 98.4 5.3E-07 1.8E-11 77.7 7.5 118 86-229 11-129 (184)
66 4fry_A Putative signal-transdu 98.4 2.8E-07 9.5E-12 76.7 5.5 108 96-229 22-131 (157)
67 3lfr_A Putative metal ION tran 98.4 6E-07 2E-11 73.7 7.3 108 180-365 13-121 (136)
68 2yzi_A Hypothetical protein PH 98.4 7.4E-07 2.5E-11 72.2 7.7 115 86-228 9-124 (138)
69 1yav_A Hypothetical protein BS 98.4 3E-07 1E-11 76.8 5.3 120 86-228 16-137 (159)
70 3k2v_A Putative D-arabinose 5- 98.4 4.9E-07 1.7E-11 75.0 6.4 117 86-228 30-147 (149)
71 2j9l_A Chloride channel protei 98.4 9.5E-07 3.2E-11 74.8 8.1 122 86-228 13-160 (185)
72 3lfr_A Putative metal ION tran 98.4 8E-07 2.7E-11 73.0 7.4 108 15-161 14-129 (136)
73 2rc3_A CBS domain; in SITU pro 98.4 5E-07 1.7E-11 73.1 5.9 107 97-228 19-126 (135)
74 3ocm_A Putative membrane prote 98.3 1.2E-06 4.2E-11 76.0 8.4 114 86-228 38-152 (173)
75 2emq_A Hypothetical conserved 98.3 9.5E-07 3.3E-11 73.1 6.8 129 168-369 9-137 (157)
76 3kxr_A Magnesium transporter, 98.3 1.5E-06 5.1E-11 77.9 8.5 117 167-365 51-168 (205)
77 4fry_A Putative signal-transdu 98.3 3.2E-07 1.1E-11 76.3 3.8 108 180-364 21-128 (157)
78 3k6e_A CBS domain protein; str 98.3 1.1E-06 3.8E-11 75.0 7.1 110 15-164 26-147 (156)
79 3lqn_A CBS domain protein; csg 98.3 2.3E-06 8E-11 70.4 8.6 109 15-164 26-148 (150)
80 1yav_A Hypothetical protein BS 98.3 7.7E-07 2.6E-11 74.4 5.8 124 167-365 11-136 (159)
81 3hf7_A Uncharacterized CBS-dom 98.3 1.6E-06 5.4E-11 70.9 7.1 108 15-161 13-129 (130)
82 3oco_A Hemolysin-like protein 98.3 1.4E-06 4.8E-11 72.7 6.8 108 15-161 31-145 (153)
83 3gby_A Uncharacterized protein 98.3 2.1E-06 7.3E-11 69.2 7.4 106 15-160 14-127 (128)
84 3gby_A Uncharacterized protein 98.2 1.5E-06 5E-11 70.2 6.2 121 169-369 4-124 (128)
85 3sl7_A CBS domain-containing p 98.2 2.5E-06 8.4E-11 71.7 7.9 114 15-167 15-164 (180)
86 3oi8_A Uncharacterized protein 98.2 4.5E-07 1.5E-11 76.3 3.3 114 86-227 40-154 (156)
87 1y5h_A Hypothetical protein RV 98.2 7.7E-07 2.6E-11 71.7 4.4 107 97-228 18-126 (133)
88 2j9l_A Chloride channel protei 98.2 8.8E-07 3E-11 75.0 4.7 130 183-364 25-158 (185)
89 3ctu_A CBS domain protein; str 98.2 1.9E-06 6.5E-11 71.6 6.2 112 15-166 26-149 (156)
90 1vr9_A CBS domain protein/ACT 98.2 6.3E-06 2.2E-10 73.4 9.9 151 14-216 21-174 (213)
91 2oux_A Magnesium transporter; 98.2 2.8E-06 9.7E-11 79.5 7.5 118 166-365 133-253 (286)
92 2yvy_A MGTE, Mg2+ transporter 98.1 2.7E-06 9.4E-11 78.7 6.8 114 169-364 134-250 (278)
93 3ocm_A Putative membrane prote 98.1 5E-06 1.7E-10 72.1 6.5 107 15-161 47-159 (173)
94 3l2b_A Probable manganase-depe 98.1 4.2E-06 1.5E-10 75.1 5.8 47 180-229 194-240 (245)
95 3kxr_A Magnesium transporter, 98.0 9E-06 3.1E-10 72.8 6.5 110 86-228 56-169 (205)
96 3l2b_A Probable manganase-depe 97.9 1.1E-05 3.7E-10 72.4 6.4 56 169-229 6-61 (245)
97 2yvy_A MGTE, Mg2+ transporter 97.8 3.6E-05 1.2E-09 71.2 7.9 110 86-228 137-252 (278)
98 2oux_A Magnesium transporter; 97.8 1.9E-05 6.6E-10 73.9 5.7 102 97-228 147-254 (286)
99 3org_A CMCLC; transporter, tra 97.7 2.3E-05 7.7E-10 81.7 4.7 163 169-364 452-618 (632)
100 2zy9_A Mg2+ transporter MGTE; 97.6 7.8E-05 2.7E-09 75.2 7.5 114 169-364 154-270 (473)
101 1me8_A Inosine-5'-monophosphat 97.6 8.5E-06 2.9E-10 82.9 0.4 107 179-363 104-213 (503)
102 3pc3_A CG1753, isoform A; CBS, 97.6 8.4E-05 2.9E-09 75.5 6.6 114 86-228 386-506 (527)
103 2d4z_A Chloride channel protei 97.5 0.00022 7.5E-09 66.6 8.2 49 178-229 19-69 (250)
104 1zfj_A Inosine monophosphate d 97.5 0.00011 3.6E-09 73.7 5.8 126 148-364 77-204 (491)
105 1vrd_A Inosine-5'-monophosphat 97.5 1.7E-05 5.8E-10 79.8 0.0 127 148-364 82-208 (494)
106 3usb_A Inosine-5'-monophosphat 97.4 0.0002 6.9E-09 73.3 7.4 107 178-364 119-227 (511)
107 2zy9_A Mg2+ transporter MGTE; 97.3 0.00046 1.6E-08 69.6 8.2 104 96-229 164-273 (473)
108 3org_A CMCLC; transporter, tra 97.3 0.00029 1E-08 73.4 6.6 122 86-229 455-621 (632)
109 1zfj_A Inosine monophosphate d 97.2 0.00052 1.8E-08 68.8 7.6 102 97-227 100-205 (491)
110 2d4z_A Chloride channel protei 97.2 0.00089 3E-08 62.5 8.3 49 177-229 194-242 (250)
111 4fxs_A Inosine-5'-monophosphat 97.2 7.8E-05 2.7E-09 76.1 1.2 105 180-363 97-201 (496)
112 4avf_A Inosine-5'-monophosphat 97.1 6.9E-05 2.4E-09 76.3 0.0 104 180-363 96-199 (490)
113 1jcn_A Inosine monophosphate d 97.1 0.00012 4E-09 74.3 1.4 127 148-362 95-224 (514)
114 3pc3_A CG1753, isoform A; CBS, 97.1 0.00076 2.6E-08 68.5 7.2 111 15-161 393-513 (527)
115 3usb_A Inosine-5'-monophosphat 96.9 0.0087 3E-07 61.3 12.9 110 14-159 121-234 (511)
116 1me8_A Inosine-5'-monophosphat 96.9 0.00016 5.6E-09 73.5 0.0 108 97-229 107-217 (503)
117 4fxs_A Inosine-5'-monophosphat 96.8 0.0011 3.8E-08 67.6 5.2 105 97-229 99-205 (496)
118 1vrd_A Inosine-5'-monophosphat 96.6 0.00034 1.2E-08 70.4 0.1 102 97-227 105-209 (494)
119 1jcn_A Inosine monophosphate d 96.4 0.00055 1.9E-08 69.4 -0.1 105 97-228 118-228 (514)
120 3ghd_A A cystathionine beta-sy 96.3 0.00087 3E-08 51.0 0.5 43 183-228 2-44 (70)
121 3fio_A A cystathionine beta-sy 96.0 0.0059 2E-07 44.0 4.0 44 183-229 2-45 (70)
122 2cu0_A Inosine-5'-monophosphat 96.0 0.0012 4.1E-08 66.7 0.0 102 97-230 103-205 (486)
123 3ghd_A A cystathionine beta-sy 95.9 0.0087 3E-07 45.4 4.7 40 322-362 1-40 (70)
124 4avf_A Inosine-5'-monophosphat 95.9 0.0014 4.7E-08 66.8 0.0 103 97-229 98-203 (490)
125 2cu0_A Inosine-5'-monophosphat 95.8 0.0016 5.5E-08 65.7 0.0 101 180-364 101-201 (486)
126 3fio_A A cystathionine beta-sy 95.7 0.012 4.1E-07 42.3 4.7 40 323-363 2-41 (70)
127 4af0_A Inosine-5'-monophosphat 94.8 0.0052 1.8E-07 64.2 0.3 107 175-364 142-251 (556)
128 4af0_A Inosine-5'-monophosphat 87.7 0.1 3.5E-06 54.6 0.0 90 15-126 147-240 (556)
No 1
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.89 E-value=4.7e-23 Score=191.00 Aligned_cols=251 Identities=16% Similarity=0.138 Sum_probs=185.8
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------- 85 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------- 85 (379)
+-++++...|+.+|++.|.+++...+|||+.. .++++|++++-|++.++..
T Consensus 41 ~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~--------------------~~~lvGilt~~Dl~~~l~~~~~~~~~~~ 100 (323)
T 3t4n_C 41 RLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSK--------------------TSRFAGLLTTTDFINVIQYYFSNPDKFE 100 (323)
T ss_dssp EEEEEETTSBHHHHHHHHHHTTCSCEEEEETT--------------------TTEEEEEECHHHHHHHHHHHHHCGGGGG
T ss_pred cEEEEcCCCcHHHHHHHHHHcCCceEEEEeCC--------------------CCeEEEEEEHHHHHHHHHHHHcCcchhH
Confidence 34678889999999999999999999999832 3589999999999987631
Q ss_pred ---------ccccc---cCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHH
Q 041297 86 ---------CFCSF---AKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQED 152 (379)
Q Consensus 86 ---------VS~li---~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeD 152 (379)
+.++. ......+..+.|++++.||++.|. +|+++++|++...+. ....-.-++|+.|
T Consensus 101 ~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~----------~~~~l~Givt~~d 170 (323)
T 3t4n_C 101 LVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEET----------HREIVVSVLTQYR 170 (323)
T ss_dssp GGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTT----------CCEEEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCC----------CccceEEEecHHH
Confidence 22222 111134788999999999999998 699999997753221 0001233999999
Q ss_pred HHHHHHhhhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcH
Q 041297 153 LIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDE 232 (379)
Q Consensus 153 VvRFLl~~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDe 232 (379)
+++|+.+.... ......+|.++++.-..++..|..++++.+|++.|.+. +.+.+||||.+|+++|-||..||...-.
T Consensus 171 i~~~l~~~~~~-~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~--~~~~~pVvd~~~~~~Giit~~dl~~~~~ 247 (323)
T 3t4n_C 171 ILKFVALNCRE-THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQG--RVSSVPIIDENGYLINVYEAYDVLGLIK 247 (323)
T ss_dssp HHHHHHHHCGG-GGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEETTHHHHHHH
T ss_pred HHHHHHhcCCc-hhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHc--CCCEEEEECCCCeEEEEEeHHHHHHHHh
Confidence 99999987765 45667899999876533399999999999999999875 5589999999999999999988854110
Q ss_pred HHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCC
Q 041297 233 TVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGG 312 (379)
Q Consensus 233 t~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~ 312 (379)
.........++.|+| ...
T Consensus 248 ~~~~~~~~~~v~~~m--------------------------------------~~~------------------------ 265 (323)
T 3t4n_C 248 GGIYNDLSLSVGEAL--------------------------------------MRR------------------------ 265 (323)
T ss_dssp TTHHHHTTSBHHHHG--------------------------------------GGS------------------------
T ss_pred hchhhhccCCHHHHH--------------------------------------hhc------------------------
Confidence 000000111111111 000
Q ss_pred CcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 313 YSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 313 ~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
......+++|.+..+|.+++.++..|+++++||+|++|.++|+|+..-
T Consensus 266 ----~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~D 313 (323)
T 3t4n_C 266 ----SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSD 313 (323)
T ss_dssp ----CTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHH
T ss_pred ----cccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHH
Confidence 001135799999999999999999999999999999999999998653
No 2
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.83 E-value=2.1e-20 Score=173.91 Aligned_cols=250 Identities=14% Similarity=0.105 Sum_probs=181.0
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------- 85 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------- 85 (379)
+-+++....|+.+|++.|.+++...+|||+.. .++++|+|++-|++.++..
T Consensus 33 ~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~--------------------~~~~vGiv~~~Dl~~~~~~~~~~~~~~~ 92 (334)
T 2qrd_G 33 RLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE--------------------ANKFAGLLTMADFVNVIKYYYQSSSFPE 92 (334)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTCSCEEEEETT--------------------TTEEEEEECHHHHHHHHHHHHHHCSCGG
T ss_pred CEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCC--------------------CCeEEEEEEHHHHHHHHHHHhhccCCcc
Confidence 34678889999999999999999999999832 2579999999999987631
Q ss_pred ---------cccc---c---cCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEee
Q 041297 86 ---------CFCS---F---AKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLT 149 (379)
Q Consensus 86 ---------VS~l---i---~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LT 149 (379)
++.+ + ...+.-+..+.|++++.||++.|. +|+++++|++...++ ++..-.-++|
T Consensus 93 ~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~----------~~~~~~Givt 162 (334)
T 2qrd_G 93 AIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET----------GSEMIVSVLT 162 (334)
T ss_dssp GGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTT----------TEEEEEEEEE
T ss_pred HHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCc----------CccceEEEee
Confidence 1111 0 011122478999999999999998 799999997653211 0011234999
Q ss_pred HHHHHHHHHhhhcccCCCCCCccccccc-ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 150 QEDLIRYFLNFIGLLNPTPNQPINSHNI-IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 150 QeDVvRFLl~~ig~l~p~p~~SI~sLG~-I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
++|+++|+...+... .....++.+++. ..++ ++.|..+++..+|++.|.+. ....+||||.+|+++|-|+..||.
T Consensus 163 ~~dl~~~~~~~~~~~-~~~~~~v~~l~~~m~~~-~~~v~~~~~~~~~~~~m~~~--~~~~~~Vvd~~~~~~Giit~~dl~ 238 (334)
T 2qrd_G 163 QYRILKFISMNCKET-AMLRVPLNQMTIGTWSN-LATASMETKVYDVIKMLAEK--NISAVPIVNSEGTLLNVYESVDVM 238 (334)
T ss_dssp HHHHHHHHHHHCGGG-GGCCCBGGGSSCSBCSS-CCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEETHHHH
T ss_pred HHHHHHHHHhhccch-hhhhCcHHHhCCcccCC-ceEECCCCcHHHHHHHHHHc--CCcEEEEEcCCCcEEEEEEHHHHH
Confidence 999999998765544 234678899874 4566 99999999999999999876 458999999999999999988774
Q ss_pred CCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcC
Q 041297 229 SCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSA 308 (379)
Q Consensus 229 ~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~ 308 (379)
. +++. +.+ -+...|. .+.|. .. . +
T Consensus 239 ~-------~~~~---~~~---~~~~~~v-------------------~~~m~------~~-------~-~---------- 262 (334)
T 2qrd_G 239 H-------LIQD---GDY---SNLDLSV-------------------GEALL------KR-------P-A---------- 262 (334)
T ss_dssp H-------HHTT---SCG---GGGGSBH-------------------HHHHT------TC-------C-T----------
T ss_pred H-------Hhhc---ccc---ccccCcH-------------------HHHHh------cc-------c-c----------
Confidence 3 1100 000 0000000 00110 00 0 0
Q ss_pred CCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 309 RSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 309 r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
....+++|++..+|.+++.+|..|++++++|+|++|.++|+|+..-
T Consensus 263 ----------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~d 308 (334)
T 2qrd_G 263 ----------NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLAD 308 (334)
T ss_dssp ----------TCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHH
T ss_pred ----------cCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHH
Confidence 0145789999999999999999999999999999999999999743
No 3
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.81 E-value=1e-19 Score=169.42 Aligned_cols=247 Identities=17% Similarity=0.226 Sum_probs=183.2
Q ss_pred cccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-------
Q 041297 13 WCDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP------- 85 (379)
Q Consensus 13 ~~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~------- 85 (379)
-.+-+++....|+.+|++.+.+++...+|||+.+ .++++|+|+.-|++.++..
T Consensus 44 ~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~--------------------~~~~vGivt~~Dll~~l~~~~~~~~~ 103 (330)
T 2v8q_E 44 SSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK--------------------KQSFVGMLTITDFINILHRYYKSALV 103 (330)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT--------------------TTEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCC--------------------CCeEEEEEEHHHHHHHHHHHHhcccc
Confidence 4456788899999999999999999999999843 2479999999999986642
Q ss_pred -ccccc-----------cCC-CCceEEeCCCCchhHHHHHHh-cCccEEEEecC-CcccCCCCCCcccccCCcceEEeeH
Q 041297 86 -CFCSF-----------AKD-SGIVRHLKPSASLLEAVDLLL-GGVQNLVILPA-GIKLQPKPSLKSTFHNDSEYCWLTQ 150 (379)
Q Consensus 86 -VS~li-----------~~~-~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s-~~k~~~~~s~~~~~~~~~~yC~LTQ 150 (379)
..++- +.. ...+..|.|++++.||++.|. +|+++++|++. ..+ -.-++|+
T Consensus 104 ~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~~Givt~ 168 (330)
T 2v8q_E 104 QIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGN---------------TLYILTH 168 (330)
T ss_dssp TCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCC---------------EEEEECH
T ss_pred chhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCc---------------EEEEEcH
Confidence 11110 010 134778999999999999998 69999999864 211 1239999
Q ss_pred HHHHHHHHhhhcc--cCCCCCCccccccccc-CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 151 EDLIRYFLNFIGL--LNPTPNQPINSHNIID-DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 151 eDVvRFLl~~ig~--l~p~p~~SI~sLG~I~-~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
+|+++|+.+..+. +..+...++.++.+.+ ++ +..+..+++..+|++.|.+. ....+||||.+|+++|-|+..||
T Consensus 169 ~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~-~~~v~~~~~l~~~~~~m~~~--~~~~~~Vvd~~~~l~Giit~~dl 245 (330)
T 2v8q_E 169 KRILKFLKLFITEFPKPEFMSKSLEELQIGTYAN-IAMVRTTTPVYVALGIFVQH--RVSALPVVDEKGRVVDIYSKFDV 245 (330)
T ss_dssp HHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSS-CCCEETTCBHHHHHHHHHHH--CCSEEEEECTTSBEEEEEEGGGT
T ss_pred HHHHHHHHHHhhccCchhhhcCCHHHhcccCcCC-ceEECCCCCHHHHHHHHHHc--CCCeEEEECCCCcEEEEEEHHHH
Confidence 9999999876543 2233467788887666 66 99999999999999999876 45899999999999999999998
Q ss_pred CCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCc
Q 041297 228 NSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARS 307 (379)
Q Consensus 228 ~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~ 307 (379)
...-..........++.++ +.. .
T Consensus 246 ~~~~~~~~~~~~~~~v~~~--------------------------------~~~------~------------------- 268 (330)
T 2v8q_E 246 INLAAEKTYNNLDVSVTKA--------------------------------LQH------R------------------- 268 (330)
T ss_dssp GGGGGSSCCCCCSSBHHHH--------------------------------GGG------C-------------------
T ss_pred HHHHhccccccccCcHHHH--------------------------------Hhc------c-------------------
Confidence 6521100000000000000 000 0
Q ss_pred CCCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 308 ARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 308 ~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
..-...+++|.+..+|.+++.++..|++++++|+|++|.++|+|+..
T Consensus 269 ---------~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~ 315 (330)
T 2v8q_E 269 ---------SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLS 315 (330)
T ss_dssp ---------CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHH
T ss_pred ---------ccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHH
Confidence 00124578999999999999999999999999999999999999974
No 4
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.77 E-value=4.2e-18 Score=153.81 Aligned_cols=257 Identities=17% Similarity=0.155 Sum_probs=157.7
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--ccccccC
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--CFCSFAK 92 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--VS~li~~ 92 (379)
+-+++....|+.+|++.+.+++...+||++.+ ++++|+|+.-|++.++.. |.++..+
T Consensus 10 ~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~---------------------~~~~Giv~~~dl~~~~~~~~v~~~m~~ 68 (282)
T 2yzq_A 10 NPVTITLPATRNYALELFKKYKVRSFPVVNKE---------------------GKLVGIISVKRILVNPDEEQLAMLVKR 68 (282)
T ss_dssp SCCCEESSCC------------CCEEEEECTT---------------------CCEEEEEESSCC----------CCCBS
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC---------------------CcEEEEEEHHHHHhhhccCCHHHHcCC
Confidence 44677788999999999999999999999842 469999999999988764 7777653
Q ss_pred CCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHH-HHHhhhcccCCCCCC
Q 041297 93 DSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIR-YFLNFIGLLNPTPNQ 170 (379)
Q Consensus 93 ~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvR-FLl~~ig~l~p~p~~ 170 (379)
.+..+.|++++.||++.|. +|+++++|+++..+- .=++|++|+++ ++.+. ..+ ...
T Consensus 69 ---~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~---------------~Giit~~di~~~~~~~~-~~~---~~~ 126 (282)
T 2yzq_A 69 ---DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKP---------------VGILTVGDIIRRYFAKS-EKY---KGV 126 (282)
T ss_dssp ---CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCE---------------EEEEEHHHHHHHTTTTC-SGG---GGC
T ss_pred ---CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEE---------------EEEEEHHHHHHHHHhcc-CCc---ccC
Confidence 2568999999999999998 699999987653111 12899999999 87653 111 244
Q ss_pred cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhh
Q 041297 171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYM 250 (379)
Q Consensus 171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~v 250 (379)
++.++ .+++ ++.++.+++..+|++.|.+. ....+||||.+|+++|-|+..||....... .++. .. +..+.
T Consensus 127 ~v~~~--m~~~-~~~v~~~~~l~~~~~~~~~~--~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~-~~~~---~~-~~~~~ 196 (282)
T 2yzq_A 127 EIEPY--YQRY-VSIVWEGTPLKAALKALLLS--NSMALPVVDSEGNLVGIVDETDLLRDSEIV-RIMK---ST-ELAAS 196 (282)
T ss_dssp BSTTT--SBSC-CCCEETTSBHHHHHHHHHTC--SSSEEEEECTTSCEEEEEEGGGGGGCGGGC-C--------------
T ss_pred cHHHH--hCCC-CEEECCCCCHHHHHHHHHHc--CCcEEEEEcCCCeEEEEEEHHHHhhhhhhh-hhhc---cc-hhhhh
Confidence 55543 4667 89999999999999999875 457899999999999999999997421100 0000 00 00000
Q ss_pred ccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCC
Q 041297 251 DCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWS 330 (379)
Q Consensus 251 d~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~S 330 (379)
+ + ..++-. .... .. + + .. ... .. ....+.--...+++|+|..
T Consensus 197 ~-----~--~~~~~~----~~~~---~~---------~---~--~~-~~~-----~~----~~~v~~im~~~~~~v~~~~ 238 (282)
T 2yzq_A 197 S-----E--EEWILE----SHPT---LL---------F---E--KF-ELQ-----LP----NKPVAEIMTRDVIVATPHM 238 (282)
T ss_dssp --------------------------------------------------------C----CCBGGGTCBSSCCCBCTTS
T ss_pred h-----h--hhhhcc----cchH---HH---------H---h--Hh-hhh-----hc----cCCHHHhcCCCCceeCCCC
Confidence 0 0 000000 0000 00 0 0 00 000 00 0001111124679999999
Q ss_pred cHHHHHHHHHHcCCcEEEEeeCCCCcccceEe
Q 041297 331 SLMAVIMQALARRDRLRSMAKAENPNFCPVRI 362 (379)
Q Consensus 331 SLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~ 362 (379)
+|.+++..|..|++++++|+|++|.++|+|+.
T Consensus 239 ~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~ 270 (282)
T 2yzq_A 239 TVHEVALKMAKYSIEQLPVIRGEGDLIGLIRD 270 (282)
T ss_dssp BHHHHHHHHHHHTCSEEEEEETTTEEEEEEEH
T ss_pred CHHHHHHHHHHcCcceeEEECCCCCEEEEEeH
Confidence 99999999999999999999999999999995
No 5
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.76 E-value=9.6e-18 Score=150.52 Aligned_cols=238 Identities=16% Similarity=0.168 Sum_probs=174.8
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------- 85 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------- 85 (379)
+-+++....|+.+|++.+.+++...+||++.+ .++++|+++.-||+-++..
T Consensus 13 ~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~--------------------~~~~~Givt~~di~~~~~~~~~~~~~~~ 72 (280)
T 3kh5_A 13 KIVTVYPTTTIRKALMTMNENKYRRLPVVNAG--------------------NNKVVGIITSMDIVDFMGGGSKYNLIRE 72 (280)
T ss_dssp CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTT--------------------TCBEEEEEEHHHHHHHTTTSGGGHHHHT
T ss_pred CcEEECCCCcHHHHHHHHHhCCCcEeeEEECC--------------------CCeEEEEEEHHHHHHHhcccchhhhhhh
Confidence 67889999999999999999999999999841 2569999999999988742
Q ss_pred -------------ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHH
Q 041297 86 -------------CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQE 151 (379)
Q Consensus 86 -------------VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQe 151 (379)
|+++..+ .+..+.+++++.||++.|. +|+++++|++...+- .=++|++
T Consensus 73 ~~~~~~~~~~~~~v~~im~~---~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~Givt~~ 134 (280)
T 3kh5_A 73 KHERNFLAAINEPVREIMEE---NVITLKENADIDEAIETFLTKNVGGAPIVNDENQL---------------ISLITER 134 (280)
T ss_dssp TSTTCHHHHTTSBGGGTSBC---SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBE---------------EEEEEHH
T ss_pred ccccchhHHhhhhHHHhcCC---CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEE---------------EEEEEHH
Confidence 4444432 3678999999999999998 699999998643211 1299999
Q ss_pred HHHHHHHhhhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCc
Q 041297 152 DLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCD 231 (379)
Q Consensus 152 DVvRFLl~~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CD 231 (379)
|+++++.+.+.. ..++.++ .+++ +..++.+++..+|++.|++. ....+||| .+|+++|-|+..||...-
T Consensus 135 dl~~~~~~~~~~-----~~~v~~~--m~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv-~~~~~~Givt~~dl~~~~ 203 (280)
T 3kh5_A 135 DVIRALLDKIDE-----NEVIDDY--ITRD-VIVATPGERLKDVARTMVRN--GFRRLPVV-SEGRLVGIITSTDFIKLL 203 (280)
T ss_dssp HHHHHHGGGSCT-----TCBSGGG--CBCS-CCCBCTTCBHHHHHHHHHHH--TCSEEEEE-ETTEEEEEEEHHHHHHHH
T ss_pred HHHHHHhhcCCC-----CCCHHHH--hCCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEE-ECCEEEEEEEHHHHHHHH
Confidence 999999775431 2345443 4567 89999999999999999886 45899999 789999999988764310
Q ss_pred HHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCC
Q 041297 232 ETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSG 311 (379)
Q Consensus 232 et~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~ 311 (379)
..+... ..+...... +.. + .+ . ++
T Consensus 204 ----------~~~~~~-----------------~~~~~~~~~---~~~-~------~~------v-~~------------ 227 (280)
T 3kh5_A 204 ----------GSDWAF-----------------NHMQTGNVR---EIT-N------VR------M-EE------------ 227 (280)
T ss_dssp ----------TSHHHH-----------------HHHHSCCTH---HHH-H------CB------H-HH------------
T ss_pred ----------hhhhhh-----------------hhhcccchh---hhh-C------Cc------H-HH------------
Confidence 000000 000000000 000 0 00 0 00
Q ss_pred CCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 312 GYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 312 ~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
--+..+++|.+..+|.+++.++..|++++++|+|++|.++|+|+..
T Consensus 228 ------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~ 273 (280)
T 3kh5_A 228 ------IMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEK 273 (280)
T ss_dssp ------HSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHH
T ss_pred ------HhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHH
Confidence 0124578999999999999999999999999999999999999864
No 6
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.74 E-value=1.2e-17 Score=152.91 Aligned_cols=237 Identities=10% Similarity=0.081 Sum_probs=176.3
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------- 85 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------- 85 (379)
+-+++....|+.+|++.|.+++...+||++ + +++|+++.-||+-++..
T Consensus 29 ~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d--~---------------------~l~GivT~~Di~~~~~~~~~~~~~~~ 85 (296)
T 3ddj_A 29 NPPILSKEDRLGSAFKKINEGGIGRIIVAN--E---------------------KIEGLLTTRDLLSTVESYCKDSCSQG 85 (296)
T ss_dssp SCCEECTTSBHHHHHHHTTGGGCCEEEEES--S---------------------SEEEEEEHHHHHGGGTTCC---CCHH
T ss_pred CCcEECCCccHHHHHHHHHHCCCceEEEEC--C---------------------eEEEEEeHHHHHHHhcccccccccch
Confidence 457788999999999999999999999998 2 48999999999998841
Q ss_pred ---------ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHH
Q 041297 86 ---------CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIR 155 (379)
Q Consensus 86 ---------VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvR 155 (379)
|+++..+ .+..+.|++++.||++.|. +|+++++|+++..+- .-++|+.|+++
T Consensus 86 ~~~~~~~~~v~~im~~---~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l---------------vGivt~~dl~~ 147 (296)
T 3ddj_A 86 DLYHISTTPIIDYMTP---NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKP---------------VGIVTEREFLL 147 (296)
T ss_dssp HHHHHHTSBGGGTSEE---SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCE---------------EEEEEHHHHGG
T ss_pred hhHHHhcccHHHhccC---CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcE---------------EEEEeHHHHHH
Confidence 5555532 2568999999999999999 699999998643211 12999999999
Q ss_pred HHHhhhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHH
Q 041297 156 YFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVA 235 (379)
Q Consensus 156 FLl~~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a 235 (379)
++.+.. ...++.++ .+++ +..+..+++..+|++.|.+. ....+||||.+|+++|-|+..||...-.
T Consensus 148 ~~~~~~------~~~~v~~~--m~~~-~~~v~~~~~l~~~~~~m~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~~~--- 213 (296)
T 3ddj_A 148 LYKDLD------EIFPVKVF--MSTK-VQTIYKEVRLDQAVKLMLRR--GFRRLPVIDDDNKVVGIVTVVNAIKQLA--- 213 (296)
T ss_dssp GGGGSC------CCCBHHHH--SBCS-CCCEETTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHHHH---
T ss_pred hhhccc------ccccHHHh--hcCC-CeEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCEEEEEEEHHHHHHHHH---
Confidence 875432 23455554 3466 89999999999999999886 4589999999999999999887743110
Q ss_pred HHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcc
Q 041297 236 AAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSA 315 (379)
Q Consensus 236 ~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~ 315 (379)
..+..+.. + ... . .+ . .+
T Consensus 214 ~~~~~~~~-------------~--------------------~~~-----~-~~------v-~~---------------- 231 (296)
T 3ddj_A 214 KAVDKLDP-------------D--------------------YFY-----G-KV------V-KD---------------- 231 (296)
T ss_dssp HHHHHTCT-------------H--------------------HHH-----T-CB------H-HH----------------
T ss_pred HHHhhcCh-------------h--------------------hhc-----C-cC------H-HH----------------
Confidence 00100000 0 000 0 00 0 00
Q ss_pred cccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehhhHHHH
Q 041297 316 RVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAKKQQLS 370 (379)
Q Consensus 316 ~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~~~~~~ 370 (379)
--...+++|.+..+|.+++.++..|++++++|+|++|.++|+|+..---+.+.
T Consensus 232 --~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~ 284 (296)
T 3ddj_A 232 --VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALH 284 (296)
T ss_dssp --HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred --HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHH
Confidence 01135789999999999999999999999999999999999999755444443
No 7
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.27 E-value=4.7e-12 Score=115.79 Aligned_cols=171 Identities=14% Similarity=0.136 Sum_probs=135.9
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc------ccc
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP------CFC 88 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~------VS~ 88 (379)
+-+++....|+.+|+..+.+++...+||.+. .++++|+|+.-|++-++.. |++
T Consensus 102 ~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---------------------~~~lvGivt~~dl~~~~~~~~~~~~v~~ 160 (296)
T 3ddj_A 102 NPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---------------------NDKPVGIVTEREFLLLYKDLDEIFPVKV 160 (296)
T ss_dssp SCCCEETTSCHHHHHHHHHHHTCSEEEEECT---------------------TSCEEEEEEHHHHGGGGGGSCCCCBHHH
T ss_pred CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC---------------------CCcEEEEEeHHHHHHhhhcccccccHHH
Confidence 5577888899999999999999999999963 2469999999999987763 666
Q ss_pred cccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCC-
Q 041297 89 SFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNP- 166 (379)
Q Consensus 89 li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p- 166 (379)
+.. ..+..+.|++++.||++.|. +|+++++|++...+- .-++|++|+++++.+.+..+.+
T Consensus 161 ~m~---~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~~~~~~~ 222 (296)
T 3ddj_A 161 FMS---TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKV---------------VGIVTVVNAIKQLAKAVDKLDPD 222 (296)
T ss_dssp HSB---CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCE---------------EEEEEHHHHHHHHHHHHHHTCTH
T ss_pred hhc---CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEE---------------EEEEEHHHHHHHHHHHHhhcChh
Confidence 664 23678999999999999998 699999998743211 1299999999999876654432
Q ss_pred -CCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 167 -TPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 167 -~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
....++.++ .+++ ++.|..+++..+|++.|.+. +...+||||.+|+++|-||..||-.
T Consensus 223 ~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~l~Vvd~~g~~~Giit~~Dil~ 281 (296)
T 3ddj_A 223 YFYGKVVKDV--MVTN-LVTIDELASVNRAAAEMIVK--RIGSLLILNKDNTIRGIITERDLLI 281 (296)
T ss_dssp HHHTCBHHHH--SBCC-CCBCCTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred hhcCcCHHHH--hCCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEECCCCeEEEEEcHHHHHH
Confidence 123344432 4566 89999999999999999876 4589999999999999999888743
No 8
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.22 E-value=1.3e-11 Score=110.58 Aligned_cols=168 Identities=15% Similarity=0.143 Sum_probs=131.0
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-------cc
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-------CF 87 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-------VS 87 (379)
+-+++....|+.+|++.+.+++...+||.+. .++++|+|+.-|++-++.+ |.
T Consensus 93 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---------------------~~~~~Givt~~dl~~~~~~~~~~~~~v~ 151 (280)
T 3kh5_A 93 NVITLKENADIDEAIETFLTKNVGGAPIVND---------------------ENQLISLITERDVIRALLDKIDENEVID 151 (280)
T ss_dssp SCCCEETTCBHHHHHHHHHHTTCSEEEEECT---------------------TCBEEEEEEHHHHHHHHGGGSCTTCBSG
T ss_pred CCEEECCCCCHHHHHHHHHhCCCCEEEEEcC---------------------CCEEEEEEEHHHHHHHHhhcCCCCCCHH
Confidence 5577888899999999999999999999973 2469999999999987763 55
Q ss_pred ccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh--cc
Q 041297 88 CSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI--GL 163 (379)
Q Consensus 88 ~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i--g~ 163 (379)
++.. ..+..+.|++++.||++.|. +|.++++|++++ .-. ++|++|+++++.... ..
T Consensus 152 ~~m~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G-----------------ivt~~dl~~~~~~~~~~~~ 211 (280)
T 3kh5_A 152 DYIT---RDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVG-----------------IITSTDFIKLLGSDWAFNH 211 (280)
T ss_dssp GGCB---CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEE-----------------EEEHHHHHHHHTSHHHHHH
T ss_pred HHhC---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEE-----------------EEEHHHHHHHHhhhhhhhh
Confidence 5543 23678999999999999999 699999998432 122 999999999985421 00
Q ss_pred -----cCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 164 -----LNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 164 -----l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+......++.++ .+++ ++.|..+++..+|++.|.+. +...+||||.+|+++|-||..||-
T Consensus 212 ~~~~~~~~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~l~Vvd~~g~~~Givt~~dil 276 (280)
T 3kh5_A 212 MQTGNVREITNVRMEEI--MKRD-VITAKEGDKLKKIAEIMVTN--DIGALPVVDENLRIKGIITEKDVL 276 (280)
T ss_dssp HHSCCTHHHHHCBHHHH--SBSS-CCCBCTTCBHHHHHHHHHHH--TCCEEEEECTTCBEEEEEEHHHHG
T ss_pred hcccchhhhhCCcHHHH--hcCC-CEEECCCCCHHHHHHHHHHC--CCCEEEEECCCCeEEEEEeHHHHH
Confidence 001123344443 3566 89999999999999999885 558999999999999999988874
No 9
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.11 E-value=2.3e-10 Score=105.83 Aligned_cols=174 Identities=13% Similarity=0.111 Sum_probs=132.6
Q ss_pred ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc----------
Q 041297 16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP---------- 85 (379)
Q Consensus 16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~---------- 85 (379)
-+++....|+.+|++.+.+++...+||-+..+.. .+.+++|+|+.-||+-++..
T Consensus 124 ~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~----------------~~~~l~Givt~~di~~~l~~~~~~~~~~~~ 187 (323)
T 3t4n_C 124 TASIHPSRPLFEACLKMLESRSGRIPLIDQDEET----------------HREIVVSVLTQYRILKFVALNCRETHFLKI 187 (323)
T ss_dssp CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTT----------------CCEEEEEEEEHHHHHHHHHHHCGGGGGCCS
T ss_pred ceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCC----------------CccceEEEecHHHHHHHHHhcCCchhhhhC
Confidence 4677888999999999999999999999854320 12359999999999987652
Q ss_pred -ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcc
Q 041297 86 -CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGL 163 (379)
Q Consensus 86 -VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~ 163 (379)
|+++--.-..-+..+.|++++.||++.|. +|++++.|++...+- .=++|+.|+++++.+....
T Consensus 188 ~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~---------------~Giit~~dl~~~~~~~~~~ 252 (323)
T 3t4n_C 188 PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL---------------INVYEAYDVLGLIKGGIYN 252 (323)
T ss_dssp BGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBE---------------EEEEETTHHHHHHHTTHHH
T ss_pred cHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeE---------------EEEEeHHHHHHHHhhchhh
Confidence 55551101123678999999999999999 699999998643221 1299999999999775421
Q ss_pred cCCCCCCcccccccccC------CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 164 LNPTPNQPINSHNIIDD------AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 164 l~p~p~~SI~sLG~I~~------~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
. ...++.++ .++ + ++.|..+++..+|++.|.+. +...+||||.+|+++|-||..||-
T Consensus 253 ~---~~~~v~~~--m~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~~~l~Giit~~Dil 315 (323)
T 3t4n_C 253 D---LSLSVGEA--LMRRSDDFEG-VYTCTKNDKLSTIMDNIRKA--RVHRFFVVDDVGRLVGVLTLSDIL 315 (323)
T ss_dssp H---TTSBHHHH--GGGSCTTCCC-CEEECTTCBHHHHHHHHHHS--CCCEEEEECTTSBEEEEEEHHHHH
T ss_pred h---ccCCHHHH--HhhccccCCC-CEEECCCCCHHHHHHHHHHh--CCCEEEEECCCCcEEEEEEHHHHH
Confidence 1 13344443 333 6 99999999999999999885 558999999999999999988773
No 10
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.10 E-value=1.3e-10 Score=104.65 Aligned_cols=169 Identities=17% Similarity=0.164 Sum_probs=125.8
Q ss_pred ccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceee-eccc--------c
Q 041297 16 EIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIIT-FLCP--------C 86 (379)
Q Consensus 16 ~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~-~la~--------V 86 (379)
-+++....|+.+|+..+.+++...+||-+.+ ++++|+|+.-||+- ++.+ |
T Consensus 70 ~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~---------------------~~~~Giit~~di~~~~~~~~~~~~~~~v 128 (282)
T 2yzq_A 70 VPVVKENDTLKKAAKLMLEYDYRRVVVVDSK---------------------GKPVGILTVGDIIRRYFAKSEKYKGVEI 128 (282)
T ss_dssp CCEEETTSBHHHHHHHHHHHTCSEEEEECTT---------------------SCEEEEEEHHHHHHHTTTTCSGGGGCBS
T ss_pred CcEECCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------CEEEEEEEHHHHHHHHHhccCCcccCcH
Confidence 4667778999999999999999999998732 46999999999998 7752 5
Q ss_pred cccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHH------HHHHh
Q 041297 87 FCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLI------RYFLN 159 (379)
Q Consensus 87 S~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVv------RFLl~ 159 (379)
+++.. ..++.+++++++.||++.|. +|+++++|++...+- .=++|+.|++ +++..
T Consensus 129 ~~~m~---~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~---------------~Giit~~dl~~~~~~~~~~~~ 190 (282)
T 2yzq_A 129 EPYYQ---RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNL---------------VGIVDETDLLRDSEIVRIMKS 190 (282)
T ss_dssp TTTSB---SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCE---------------EEEEEGGGGGGCGGGCC----
T ss_pred HHHhC---CCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeE---------------EEEEEHHHHhhhhhhhhhhcc
Confidence 55553 33678999999999999999 589999887642211 1178888888 66531
Q ss_pred hh----------------ccc----CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEE
Q 041297 160 FI----------------GLL----NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLV 219 (379)
Q Consensus 160 ~i----------------g~l----~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLI 219 (379)
+. ..+ ......++.++ .+++ +..|..++++.+|++.|.+. +...+||||.+|+++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~~~lv 265 (282)
T 2yzq_A 191 TELAASSEEEWILESHPTLLFEKFELQLPNKPVAEI--MTRD-VIVATPHMTVHEVALKMAKY--SIEQLPVIRGEGDLI 265 (282)
T ss_dssp ----------------------------CCCBGGGT--CBSS-CCCBCTTSBHHHHHHHHHHH--TCSEEEEEETTTEEE
T ss_pred chhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHh--cCCC-CceeCCCCCHHHHHHHHHHc--CcceeEEECCCCCEE
Confidence 00 000 11235566653 4577 99999999999999999876 558999999989999
Q ss_pred eeeCccccC
Q 041297 220 GDISPFSLN 228 (379)
Q Consensus 220 GeISa~~L~ 228 (379)
|-||..||-
T Consensus 266 Giit~~Dil 274 (282)
T 2yzq_A 266 GLIRDFDLL 274 (282)
T ss_dssp EEEEHHHHG
T ss_pred EEEeHHHHH
Confidence 999988874
No 11
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.06 E-value=6.9e-10 Score=103.19 Aligned_cols=196 Identities=11% Similarity=0.094 Sum_probs=134.8
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcc-
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGL- 163 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~- 163 (379)
|+++..+. .-+..|++++++.||++.|. +|.+++.|+++...+ -+-++|..|+++++......
T Consensus 37 v~dim~p~-~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~--------------~vGivt~~Dll~~l~~~~~~~ 101 (330)
T 2v8q_E 37 CYDLIPTS-SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQS--------------FVGMLTITDFINILHRYYKSA 101 (330)
T ss_dssp GGGGSCSE-EEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTE--------------EEEEEEHHHHHHHHHHHHHHH
T ss_pred HhhhccCC-CcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCe--------------EEEEEEHHHHHHHHHHHHhcc
Confidence 78887532 45889999999999999998 699999997653221 13499999999998764321
Q ss_pred ---cCCCCCCccccc-----ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC-CCcEEeeeCccccCCCcHHH
Q 041297 164 ---LNPTPNQPINSH-----NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE-EGRLVGDISPFSLNSCDETV 234 (379)
Q Consensus 164 ---l~p~p~~SI~sL-----G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~-dGkLIGeISa~~L~~CDet~ 234 (379)
+..+...++.++ .+..++ +..|+.+++..+|++.|++. ....+||||. +|+++|-|+..||..
T Consensus 102 ~~~~~~l~~~~~~~~~~~~~~im~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~~Givt~~dl~~----- 173 (330)
T 2v8q_E 102 LVQIYELEEHKIETWREVYLQDSFKP-LVCISPNASLFDAVSSLIRN--KIHRLPVIDPESGNTLYILTHKRILK----- 173 (330)
T ss_dssp TTTCCCGGGCBHHHHHHHHSSSSCCC-CCCBCTTSBHHHHHHHHHHH--TCSCEEEECTTTCCEEEEECHHHHHH-----
T ss_pred ccchhHHhhccHHHHHHHHhhcccCC-ceEeCCCCCHHHHHHHHHHC--CCCeEEEEeCCCCcEEEEEcHHHHHH-----
Confidence 111112222222 123566 99999999999999999875 4578999999 899999998877642
Q ss_pred HHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCc
Q 041297 235 AAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYS 314 (379)
Q Consensus 235 a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S 314 (379)
++. .+... .|.+++ +. .+ - ++. .
T Consensus 174 --~~~--------~~~~~-~~~~~~-------------------~~-------~~------v-~~~-----~-------- 196 (330)
T 2v8q_E 174 --FLK--------LFITE-FPKPEF-------------------MS-------KS------L-EEL-----Q-------- 196 (330)
T ss_dssp --HHH--------HHSCS-SSCCGG-------------------GG-------SB------H-HHH-----T--------
T ss_pred --HHH--------HHhhc-cCchhh-------------------hc-------CC------H-HHh-----c--------
Confidence 000 00000 000000 00 00 0 000 0
Q ss_pred ccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 315 ARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 315 ~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
......++++.+..++.+++..+..|+.+++.|+|++|.++|+|+..
T Consensus 197 --v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~ 243 (330)
T 2v8q_E 197 --IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKF 243 (330)
T ss_dssp --CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGG
T ss_pred --ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHH
Confidence 00114578999999999999999999999999999999999999965
No 12
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.06 E-value=8.5e-10 Score=94.12 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=89.7
Q ss_pred CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhh
Q 041297 170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAY 249 (379)
Q Consensus 170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~ 249 (379)
.+|.++ -+++ +.+|..++++.+|+++|.+. +.+++||||.+|+++|-||-.||...-.. ....+....
T Consensus 18 ~~V~di--M~~~-v~~v~~~~tl~~a~~~m~~~--~~~~~pVvd~~g~lvGiit~~Dll~~~~~-------~~~~~~~~~ 85 (170)
T 4esy_A 18 VPIRDI--LTSP-VVTVREDDTLDAVAKTMLEH--QIGCAPVVDQNGHLVGIITESDFLRGSIP-------FWIYEASEI 85 (170)
T ss_dssp SBGGGG--CCSC-CCCEETTSBHHHHHHHHHHT--TCSEEEEECTTSCEEEEEEGGGGGGGTCC-------TTHHHHHHH
T ss_pred CCHHHh--cCCC-CcEECCcCcHHHHHHHHHHc--CCeEEEEEcCCccEEEEEEHHHHHHHHhh-------ccccchhhh
Confidence 445553 4677 99999999999999999986 56999999999999999999998542100 000000000
Q ss_pred hccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCC
Q 041297 250 MDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPW 329 (379)
Q Consensus 250 vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~ 329 (379)
.+...+...+.+ +.... ... ..+.--+..+++|+|.
T Consensus 86 ~~~~~~~~~~~~----------------~~~~~---~~~-------------------------~v~~im~~~~~tv~~~ 121 (170)
T 4esy_A 86 LSRAIPAPEVEH----------------LFETG---RKL-------------------------TASAVMTQPVVTAAPE 121 (170)
T ss_dssp HTTTSCHHHHHH----------------HHHHH---TTC-------------------------BHHHHCBCCSCCBCTT
T ss_pred hhhccchhhHHh----------------hhccc---ccc-------------------------chhhhcccCcccCCcc
Confidence 111001111100 00000 000 0000112457999999
Q ss_pred CcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 330 SSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 330 SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
.+|.+++..|..|+++|+.|+| +|.++|+|+..
T Consensus 122 ~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~ 154 (170)
T 4esy_A 122 DSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRR 154 (170)
T ss_dssp SBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHH
T ss_pred hhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHH
Confidence 9999999999999999999999 68999999854
No 13
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=98.98 E-value=5.3e-10 Score=90.81 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=91.0
Q ss_pred CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297 168 PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLM 247 (379)
Q Consensus 168 p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~ 247 (379)
..+++.+++++-..++..++.++++.+|++.|.+. ..+.+||||.+|+++|-|+..+|... +.. +.+
T Consensus 6 ~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~-------~~~---~~~- 72 (144)
T 2nyc_A 6 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQG--RVSSVPIIDENGYLINVYEAYDVLGL-------IKG---GIY- 72 (144)
T ss_dssp GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHHHH-------HHT---C---
T ss_pred hhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHc--CcceeeEEcCCCcEEEEEcHHHHHHH-------hcc---ccc-
Confidence 36788898866644499999999999999999876 45899999999999999998887531 100 000
Q ss_pred hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297 248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY 327 (379)
Q Consensus 248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~ 327 (379)
-....|..+ .|. . .+ .....++++.
T Consensus 73 --~~~~~~v~~-------------------~m~-----~-~~----------------------------~~~~~~~~v~ 97 (144)
T 2nyc_A 73 --NDLSLSVGE-------------------ALM-----R-RS----------------------------DDFEGVYTCT 97 (144)
T ss_dssp ----CCSBHHH-------------------HHH-----H-CC----------------------------------CEEC
T ss_pred --ccCCccHHH-------------------HHh-----c-Cc----------------------------cccCCCeEEC
Confidence 000000000 010 0 00 0013478999
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
+..+|.+++..+..++.+++.|+|++|.++|+|+..-
T Consensus 98 ~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~d 134 (144)
T 2nyc_A 98 KNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSD 134 (144)
T ss_dssp TTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred CCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHH
Confidence 9999999999999999999999999999999998754
No 14
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=98.90 E-value=3.5e-09 Score=98.32 Aligned_cols=171 Identities=13% Similarity=0.087 Sum_probs=128.5
Q ss_pred cccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----------
Q 041297 17 IALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP----------- 85 (379)
Q Consensus 17 ~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~----------- 85 (379)
+++....|+.+|+..+.+++...+||-+..+.. ....++|+|+.-||+-++..
T Consensus 120 ~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~----------------~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~ 183 (334)
T 2qrd_G 120 IYVHPMHSLMDACLAMSKSRARRIPLIDVDGET----------------GSEMIVSVLTQYRILKFISMNCKETAMLRVP 183 (334)
T ss_dssp CCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTT----------------TEEEEEEEEEHHHHHHHHHHHCGGGGGCCCB
T ss_pred eeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCc----------------CccceEEEeeHHHHHHHHHhhccchhhhhCc
Confidence 788889999999999999999999998743210 01349999999999987751
Q ss_pred cccc--ccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc
Q 041297 86 CFCS--FAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG 162 (379)
Q Consensus 86 VS~l--i~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig 162 (379)
|+++ +- ...+..+.|++++.||++.|. ++.++++|++...+- .=++|..|+++++.+...
T Consensus 184 v~~l~~~m--~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~---------------~Giit~~dl~~~~~~~~~ 246 (334)
T 2qrd_G 184 LNQMTIGT--WSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTL---------------LNVYESVDVMHLIQDGDY 246 (334)
T ss_dssp GGGSSCSB--CSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBE---------------EEEEETHHHHHHHTTSCG
T ss_pred HHHhCCcc--cCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcE---------------EEEEEHHHHHHHhhcccc
Confidence 5553 11 123677999999999999999 689999988642211 129999999999876431
Q ss_pred ccCCCCCCccccccccc------CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 163 LLNPTPNQPINSHNIID------DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 163 ~l~p~p~~SI~sLG~I~------~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
. ....++.++ .+ ++ +..|+.+++..+|++.|.+. +...+||||.+|+++|-||..||-
T Consensus 247 ~---~~~~~v~~~--m~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~g~l~Giit~~dil 310 (334)
T 2qrd_G 247 S---NLDLSVGEA--LLKRPANFDG-VHTCRATDRLDGIFDAIKHS--RVHRLFVVDENLKLEGILSLADIL 310 (334)
T ss_dssp G---GGGSBHHHH--HTTCCTTCCC-CCEECTTCBHHHHHHHHHHS--CCCEEEEECTTCBEEEEEEHHHHH
T ss_pred c---cccCcHHHH--HhcccccCCC-CEEECCCCcHHHHHHHHHHc--CCCEEEEECCCCeEEEEEeHHHHH
Confidence 0 112333332 23 36 89999999999999999885 458899999999999999987763
No 15
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=98.74 E-value=1.1e-08 Score=86.17 Aligned_cols=137 Identities=16% Similarity=0.164 Sum_probs=85.8
Q ss_pred CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHH
Q 041297 181 AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLV 260 (379)
Q Consensus 181 ~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~ 260 (379)
+ +..|..++++.+|+++|.+. ..+.+||||.+|+++|-|+..+|........ .......+...... .-+.+
T Consensus 15 ~-~~~v~~~~~l~~a~~~m~~~--~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~---~~~~~~~~~~~~~~--~~~~~- 85 (180)
T 3sl7_A 15 N-LHVVKPSTSVDDALELLVEK--KVTGLPVIDDNWTLVGVVSDYDLLALDSISG---RSQNDTNLFPDVDS--TWKTF- 85 (180)
T ss_dssp G-CCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHTCC------------------------CCCSH-
T ss_pred C-ceeeCCCCcHHHHHHHHHHc--CCCeEEEECCCCeEEEEEEHHHHHhhhhhcc---ccCCcccccccccc--hhhhh-
Confidence 5 88999999999999999886 5589999999999999999999976421000 00000001000000 00000
Q ss_pred HHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHH
Q 041297 261 RLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQAL 340 (379)
Q Consensus 261 ~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAl 340 (379)
.....++... . ....+.--+..++++.+..+|..++..+.
T Consensus 86 ------------~~~~~~~~~~-----~-----------------------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~ 125 (180)
T 3sl7_A 86 ------------NELQKLISKT-----Y-----------------------GKVVGDLMTPSPLVVRDSTNLEDAARLLL 125 (180)
T ss_dssp ------------HHHHHHHHTT-----T-----------------------TCBHHHHSEESCCCEETTSBHHHHHHHHT
T ss_pred ------------HHHHHHHhcc-----c-----------------------cccHHHHhCCCceEeCCCCcHHHHHHHHH
Confidence 0000000000 0 00000001244789999999999999999
Q ss_pred HcCCcEEEEeeCCCCcccceEeehhh
Q 041297 341 ARRDRLRSMAKAENPNFCPVRIQAKK 366 (379)
Q Consensus 341 aHRV~~vWVvd~e~~l~~~v~~~~~~ 366 (379)
.|+++++.|+|++|.++|+|+..---
T Consensus 126 ~~~~~~lpVvd~~g~~vGiit~~dil 151 (180)
T 3sl7_A 126 ETKFRRLPVVDADGKLIGILTRGNVV 151 (180)
T ss_dssp TSTTCEEEEECTTCBEEEEEEHHHHH
T ss_pred HcCCCEEEEECCCCeEEEEEEHHHHH
Confidence 99999999999999999999975433
No 16
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=98.72 E-value=3.1e-09 Score=88.65 Aligned_cols=113 Identities=18% Similarity=0.223 Sum_probs=83.4
Q ss_pred CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297 180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL 259 (379)
Q Consensus 180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l 259 (379)
++ +..+..++++.+|++.|++. ..+.+||||.+|+++|-|+..+|... +.. +. .+. .
T Consensus 29 ~~-~~~v~~~~~~~~a~~~m~~~--~~~~~pVvd~~~~~vGivt~~dl~~~-------~~~---~~----~~~---~--- 85 (152)
T 2uv4_A 29 AN-IAMVRTTTPVYVALGIFVQH--RVSALPVVDEKGRVVDIYSKFDVINL-------AAE---KT----YNN---L--- 85 (152)
T ss_dssp SS-CCCEETTCBHHHHHHHHHHH--CCSEEEEECTTSBEEEEEEHHHHHHH-------HHC---SS----CCC---T---
T ss_pred CC-ceEeCCCCcHHHHHHHHHHc--CCceEeEECCCCcEEEEEeHHHHHHH-------hcc---hh----hhh---h---
Confidence 66 99999999999999999886 55899999999999999998887431 000 00 000 0
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccC--CccceeecCCCcHHHHHH
Q 041297 260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVH--RSEAIVCYPWSSLMAVIM 337 (379)
Q Consensus 260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~--~~~~vtC~p~SSLvAVMa 337 (379)
. .+ . .+. +..+. ...+++|.+..+|.+++.
T Consensus 86 -------------~--------------~~------v-~~~--------------m~~~~~~~~~~~~v~~~~~l~~a~~ 117 (152)
T 2uv4_A 86 -------------D--------------VS------V-TKA--------------LQHRSHYFEGVLKCYLHETLETIIN 117 (152)
T ss_dssp -------------T--------------SB------G-GGG--------------GGTCCHHHHTCSEECTTSBHHHHHH
T ss_pred -------------c--------------ch------H-HHH--------------HhhhhcccCCCeEECCCCcHHHHHH
Confidence 0 00 0 000 00000 145789999999999999
Q ss_pred HHHHcCCcEEEEeeCCCCcccceEee
Q 041297 338 QALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 338 QAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
.+..++.+++.|+|++|.++|+|+..
T Consensus 118 ~m~~~~~~~lpVvd~~g~~vGiit~~ 143 (152)
T 2uv4_A 118 RLVEAEVHRLVVVDENDVVKGIVSLS 143 (152)
T ss_dssp HHHHHTCSEEEEECTTSBEEEEEEHH
T ss_pred HHHHcCCeEEEEECCCCeEEEEEEHH
Confidence 99999999999999999999999864
No 17
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=98.71 E-value=2e-08 Score=79.64 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=83.6
Q ss_pred ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297 178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK 257 (379)
Q Consensus 178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe 257 (379)
.+++ +..++.+++..+|++.|.+. ..+.+||+|.+|+++|-|+..+|...- . +..
T Consensus 7 m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~G~vt~~dl~~~~-------~-----------~~~---- 61 (122)
T 3kpb_A 7 LSKP-PITAHSNISIMEAAKILIKH--NINHLPIVDEHGKLVGIITSWDIAKAL-------A-----------QNK---- 61 (122)
T ss_dssp CCSC-CCCEETTSBHHHHHHHHHHH--TCSCEEEECTTSBEEEEECHHHHHHHH-------H-----------TTC----
T ss_pred hCCC-CEEeCCCCcHHHHHHHHHHc--CCCeEEEECCCCCEEEEEEHHHHHHHH-------H-----------hcc----
Confidence 3456 88999999999999999886 558999999999999999887774410 0 000
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297 258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM 337 (379)
Q Consensus 258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa 337 (379)
.. . .+. -...++++.+..+|.+++.
T Consensus 62 -------------------------~~---v---------~~~------------------~~~~~~~v~~~~~l~~~~~ 86 (122)
T 3kpb_A 62 -------------------------KT---I---------EEI------------------MTRNVITAHEDEPVDHVAI 86 (122)
T ss_dssp -------------------------CB---G---------GGT------------------SBSSCCCEETTSBHHHHHH
T ss_pred -------------------------cC---H---------HHH------------------hcCCCeEECCCCCHHHHHH
Confidence 00 0 000 1134689999999999999
Q ss_pred HHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 338 QALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 338 QAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
++..++.+++.|+|++|.++|+|+...
T Consensus 87 ~~~~~~~~~l~Vvd~~g~~~Givt~~d 113 (122)
T 3kpb_A 87 KMSKYNISGVPVVDDYRRVVGIVTSED 113 (122)
T ss_dssp HHHHHTCSEEEEECTTCBEEEEEEHHH
T ss_pred HHHHhCCCeEEEECCCCCEEEEEeHHH
Confidence 999999999999999999999998643
No 18
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=98.70 E-value=1.1e-08 Score=86.64 Aligned_cols=133 Identities=12% Similarity=0.024 Sum_probs=91.4
Q ss_pred HHHhhhcccCCCCCCccccccccc-CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHH
Q 041297 156 YFLNFIGLLNPTPNQPINSHNIID-DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETV 234 (379)
Q Consensus 156 FLl~~ig~l~p~p~~SI~sLG~I~-~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~ 234 (379)
+....-..+..+...+|.++=--. .+ +..|..++++.+|++.|.+. ..+.+||||.+|+++|-|+..+|...
T Consensus 10 ~~~~~~~~~~~l~~~~v~dim~~~~~~-~~~v~~~~~l~~a~~~~~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~---- 82 (165)
T 3fhm_A 10 HSSGRENLYFQGMATFVKDLLDRKGRD-VVTVGPDVSIGEAAGTLHAH--KIGAVVVTDADGVVLGIFTERDLVKA---- 82 (165)
T ss_dssp ------CCCCSSSSCBHHHHHHHHCSC-CCEECTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHH----
T ss_pred cccccchhhHhhhhcCHHHHhccCCCC-CeEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHHHHH----
Confidence 334444555556666666653211 35 89999999999999999876 55899999999999999988776431
Q ss_pred HHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCc
Q 041297 235 AAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYS 314 (379)
Q Consensus 235 a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S 314 (379)
+. . ++.. .. . .+ . .+.
T Consensus 83 ---~~-------------------------~----~~~~-------~~---~-~~------v-~~~-------------- 98 (165)
T 3fhm_A 83 ---VA-------------------------G----QGAA-------SL---Q-QS------V-SVA-------------- 98 (165)
T ss_dssp ---HH-------------------------H----HGGG-------GG---T-SB------G-GGT--------------
T ss_pred ---HH-------------------------h----cCCc-------cc---c-CC------H-HHH--------------
Confidence 00 0 0000 00 0 00 0 000
Q ss_pred ccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 315 ARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 315 ~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
-...+++|.+..+|.+++..+..|+++++.|+|+ |.++|+|+...
T Consensus 99 ----m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~d 143 (165)
T 3fhm_A 99 ----MTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGD 143 (165)
T ss_dssp ----SBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHH
T ss_pred ----hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHH
Confidence 1135789999999999999999999999999999 99999999643
No 19
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=98.69 E-value=7e-09 Score=84.26 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=86.9
Q ss_pred CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC-CCcHHHHHHHHhcchhhhh
Q 041297 169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN-SCDETVAAAIATLLAGDLM 247 (379)
Q Consensus 169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~-~CDet~a~A~atLSAgdf~ 247 (379)
..++.++ .+++ +..++.++++.+|++.|.+. ..+.+||||++|+++|-|+..+|. ..-
T Consensus 6 ~~~v~~i--m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~~~---------------- 64 (138)
T 2yzi_A 6 KAPIKVY--MTKK-LLGVKPSTSVQEASRLMMEF--DVGSLVVINDDGNVVGFFTKSDIIRRVI---------------- 64 (138)
T ss_dssp TSBGGGT--CBCC-CCEECTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHHTT----------------
T ss_pred hhhHHHH--hcCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEeHHHHHHHHH----------------
Confidence 4455553 4467 89999999999999999876 458999999999999999988873 210
Q ss_pred hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297 248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY 327 (379)
Q Consensus 248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~ 327 (379)
..+ . . ...+ . .+. -...++++.
T Consensus 65 ---~~~------------------~-----------~-~~~~------v-~~~------------------m~~~~~~v~ 86 (138)
T 2yzi_A 65 ---VPG------------------L-----------P-YDIP------V-ERI------------------MTRNLITAN 86 (138)
T ss_dssp ---TTC------------------C-----------C-TTSB------G-GGT------------------CBCSCCEEE
T ss_pred ---hcC------------------C-----------c-ccCC------H-HHH------------------hhCCCeEEC
Confidence 000 0 0 0000 0 000 113578999
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297 328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK 365 (379)
Q Consensus 328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~ 365 (379)
+..+|.+++..+..|+++++ |+|++|.++|+|+...-
T Consensus 87 ~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~di 123 (138)
T 2yzi_A 87 VNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDL 123 (138)
T ss_dssp TTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHH
T ss_pred CCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHH
Confidence 99999999999999999999 99999999999996543
No 20
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=98.66 E-value=2.1e-08 Score=85.43 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=84.9
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------- 85 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------- 85 (379)
+-+++....|+.+|++.|.+++...+||.+.+ ++++|+|+.-||+-++..
T Consensus 27 ~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~---------------------g~lvGiit~~Dll~~~~~~~~~~~~~~ 85 (170)
T 4esy_A 27 PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN---------------------GHLVGIITESDFLRGSIPFWIYEASEI 85 (170)
T ss_dssp CCCCEETTSBHHHHHHHHHHTTCSEEEEECTT---------------------SCEEEEEEGGGGGGGTCCTTHHHHHHH
T ss_pred CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC---------------------ccEEEEEEHHHHHHHHhhccccchhhh
Confidence 55788899999999999999999999999732 469999999999865542
Q ss_pred ---------------------ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCc
Q 041297 86 ---------------------CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDS 143 (379)
Q Consensus 86 ---------------------VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~ 143 (379)
|+++.. -.+.+|.|+++|.||+++|. +|+++++|++++ +- .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~v~~im~---~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g-~l---------v---- 148 (170)
T 4esy_A 86 LSRAIPAPEVEHLFETGRKLTASAVMT---QPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDG-VP---------V---- 148 (170)
T ss_dssp HTTTSCHHHHHHHHHHHTTCBHHHHCB---CCSCCBCTTSBHHHHHHHHHHTTCSEEEEEETT-EE---------E----
T ss_pred hhhccchhhHHhhhccccccchhhhcc---cCcccCCcchhHHHHHHHHHHcCCcEEEEEECC-EE---------E----
Confidence 222222 23678999999999999999 799999998742 11 1
Q ss_pred ceEEeeHHHHHHHHHhh
Q 041297 144 EYCWLTQEDLIRYFLNF 160 (379)
Q Consensus 144 ~yC~LTQeDVvRFLl~~ 160 (379)
=++|+.||+|||+..
T Consensus 149 --Givt~~Dil~~l~~~ 163 (170)
T 4esy_A 149 --GIVTRRDLLKLLLLE 163 (170)
T ss_dssp --EEEEHHHHTTTSCCC
T ss_pred --EEEEHHHHHHHHHhc
Confidence 199999999998654
No 21
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=98.64 E-value=5.7e-08 Score=79.20 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=84.4
Q ss_pred CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHH
Q 041297 181 AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLV 260 (379)
Q Consensus 181 ~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~ 260 (379)
+ +..|..++++.+|++.|.+. ..+.+||||.+|+++|-|+..+|...... +. ....+
T Consensus 16 ~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~-----------------~~--~~~~~- 72 (152)
T 4gqw_A 16 D-LHVVKPTTTVDEALELLVEN--RITGFPVIDEDWKLVGLVSDYDLLALDSG-----------------DS--TWKTF- 72 (152)
T ss_dssp T-CCCBCTTSBHHHHHHHHHHT--TCSEEEEECTTCBEEEEEEHHHHTTCC-----------------------CCHHH-
T ss_pred C-CeEECCCCcHHHHHHHHHHc--CCceEEEEeCCCeEEEEEEHHHHHHhhcc-----------------cC--cccch-
Confidence 6 88999999999999999886 55899999999999999999999763210 00 00000
Q ss_pred HHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHH
Q 041297 261 RLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQAL 340 (379)
Q Consensus 261 ~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAl 340 (379)
.. + . ..+... . +. . ...--...++++.+..+|.+++.++.
T Consensus 73 ~~----~-----~---~~~~~~-----~----------~~-----~--------v~~~m~~~~~~v~~~~~l~~a~~~~~ 112 (152)
T 4gqw_A 73 NA----V-----Q---KLLSKT-----N----------GK-----L--------VGDLMTPAPLVVEEKTNLEDAAKILL 112 (152)
T ss_dssp HH----H-----H---TC--------------------CC-----B--------HHHHSEESCCCEESSSBHHHHHHHHH
T ss_pred HH----H-----H---HHHHHh-----c----------cc-----c--------HHHhcCCCceEECCCCcHHHHHHHHH
Confidence 00 0 0 000000 0 00 0 00001134689999999999999999
Q ss_pred HcCCcEEEEeeCCCCcccceEeeh
Q 041297 341 ARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 341 aHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
.|+++++.|+|++|.++|+|+...
T Consensus 113 ~~~~~~l~Vvd~~g~~~Giit~~d 136 (152)
T 4gqw_A 113 ETKYRRLPVVDSDGKLVGIITRGN 136 (152)
T ss_dssp HSSCCEEEEECTTSBEEEEEEHHH
T ss_pred HCCCCEEEEECCCCcEEEEEEHHH
Confidence 999999999999999999998754
No 22
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=98.61 E-value=1.6e-07 Score=77.69 Aligned_cols=115 Identities=16% Similarity=0.047 Sum_probs=90.2
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL 164 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l 164 (379)
|+++.-+. .-+..++|++++-||++.|. +|..+++|++....+ -.=++|..|+++++...-
T Consensus 25 v~diM~~~-~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~--------------lvGivt~~dl~~~~~~~~--- 86 (148)
T 3lv9_A 25 IREIMVPR-TDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDD--------------ILGFVHIRDLYNQKINEN--- 86 (148)
T ss_dssp GGGTSEET-TTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTS--------------EEEEEEHHHHHHHHHHHS---
T ss_pred HHHccccH-HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCc--------------EEEEEEHHHHHHHHhcCC---
Confidence 67776431 23567999999999999999 689999887653111 011999999999987653
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
..++.++= ++ +..|..+++..+|++.|.+. +...+||||.+|+++|-|+..||-
T Consensus 87 ----~~~v~~~m---~~-~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~g~~~Giit~~dil 140 (148)
T 3lv9_A 87 ----KIELEEIL---RD-IIYISENLTIDKALERIRKE--KLQLAIVVDEYGGTSGVVTIEDIL 140 (148)
T ss_dssp ----CCCGGGTC---BC-CEEEETTSBHHHHHHHHHHH--TCSEEEEECTTSSEEEEEEHHHHH
T ss_pred ----CccHHHhc---CC-CeEECCCCCHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEEHHHHH
Confidence 45566543 56 89999999999999999886 458899999999999999988763
No 23
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=98.61 E-value=7e-08 Score=78.07 Aligned_cols=103 Identities=11% Similarity=0.111 Sum_probs=81.2
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHH
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVR 261 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~ 261 (379)
+..+..++++.+|++.|++. ..+.+||||.+ |+++|-|+..||...-. ... +
T Consensus 15 ~~~v~~~~~~~~a~~~m~~~--~~~~~pVvd~~~~~~vGivt~~dl~~~~~------------------~~~-~------ 67 (127)
T 3nqr_A 15 MITLKRNQTLDECLDVIIES--AHSRFPVISEDKDHIEGILMAKDLLPFMR------------------SDA-E------ 67 (127)
T ss_dssp CCCEETTCCHHHHHHHHHHH--CCSEEEEESSSTTCEEEEEEGGGGGGGGS------------------TTC-C------
T ss_pred eEEEcCCCCHHHHHHHHHhC--CCCEEEEEcCCCCcEEEEEEHHHHHHHHh------------------ccC-C------
Confidence 88999999999999999886 45899999998 89999999998865100 000 0
Q ss_pred HHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHH
Q 041297 262 LVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALA 341 (379)
Q Consensus 262 ~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAla 341 (379)
. .+ - .+. + +.++++.+..+|.+++..+..
T Consensus 68 ------------------------~-~~------v-~~~----------------m---~~~~~v~~~~~l~~a~~~m~~ 96 (127)
T 3nqr_A 68 ------------------------A-FS------M-DKV----------------L---RTAVVVPESKRVDRMLKEFRS 96 (127)
T ss_dssp ------------------------C-CC------H-HHH----------------C---BCCCEEETTCBHHHHHHHHHH
T ss_pred ------------------------C-CC------H-HHH----------------c---CCCeEECCCCcHHHHHHHHHh
Confidence 0 00 0 000 1 226889999999999999999
Q ss_pred cCCcEEEEeeCCCCcccceEee
Q 041297 342 RRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 342 HRV~~vWVvd~e~~l~~~v~~~ 363 (379)
|+.+++-|+|++|.++|+|+..
T Consensus 97 ~~~~~lpVvd~~g~~~Giit~~ 118 (127)
T 3nqr_A 97 QRYHMAIVIDEFGGVSGLVTIE 118 (127)
T ss_dssp TTCCEEEEECTTSCEEEEEEHH
T ss_pred cCCeEEEEEeCCCCEEEEEEHH
Confidence 9999999999999999999864
No 24
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=98.61 E-value=4.1e-08 Score=79.73 Aligned_cols=117 Identities=10% Similarity=0.087 Sum_probs=85.9
Q ss_pred CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297 169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLM 247 (379)
Q Consensus 169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~ 247 (379)
..++.++=--+++ +.+++.++++.+|++.|++. ..+.+||||.+ |+++|-|+..||...
T Consensus 5 ~~~v~~iM~~~~~-v~~v~~~~~~~~a~~~m~~~--~~~~~pVvd~~~~~~~Givt~~dl~~~----------------- 64 (130)
T 3i8n_A 5 DVPVTQVMTPRPV-VFRVDATMTINEFLDKHKDT--PFSRPLVYSEQKDNIIGFVHRLELFKM----------------- 64 (130)
T ss_dssp --CCTTTSCCBCC-CCEEETTSBHHHHHHHTTTC--SCSCCEEESSSTTCEEEECCHHHHHHH-----------------
T ss_pred cCCHhhCCCcHHH-EEEEcCCCCHHHHHHHHHhC--CCCEEEEEeCCCCcEEEEEEHHHHHHH-----------------
Confidence 4455555323355 88999999999999999875 55899999997 899999988777441
Q ss_pred hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297 248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY 327 (379)
Q Consensus 248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~ 327 (379)
...+.+ . .+ - .+. + ++++++.
T Consensus 65 --~~~~~~------------------------------~-~~------v-~~~----------------m---~~~~~v~ 85 (130)
T 3i8n_A 65 --QQSGSG------------------------------Q-KQ------L-GAV----------------M---RPIQVVL 85 (130)
T ss_dssp --HHTTTT------------------------------T-SB------H-HHH----------------S---EECCEEE
T ss_pred --HhcCCC------------------------------c-CC------H-HHH----------------h---cCCcCcC
Confidence 000000 0 00 0 000 1 2368999
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
+..+|.+++..+..|+.+++-|+|++|.++|+|+..-
T Consensus 86 ~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~d 122 (130)
T 3i8n_A 86 NNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLED 122 (130)
T ss_dssp TTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHH
T ss_pred CCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHH
Confidence 9999999999999999999999999999999998643
No 25
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=98.59 E-value=9.6e-08 Score=75.73 Aligned_cols=104 Identities=19% Similarity=0.289 Sum_probs=83.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|++++.||++.|. ++.+.++|++...+- .=++|+.|+++++..... ++.++
T Consensus 11 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~G~vt~~dl~~~~~~~~~--------~v~~~ 67 (122)
T 3kpb_A 11 PITAHSNISIMEAAKILIKHNINHLPIVDEHGKL---------------VGIITSWDIAKALAQNKK--------TIEEI 67 (122)
T ss_dssp CCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBE---------------EEEECHHHHHHHHHTTCC--------BGGGT
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCE---------------EEEEEHHHHHHHHHhccc--------CHHHH
Confidence 567899999999999999 689999997642211 119999999999876322 45544
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+++ +..++.+++..+|++.|.+. +...+||||.+|+++|-|+..||-
T Consensus 68 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~l~Vvd~~g~~~Givt~~dl~ 115 (122)
T 3kpb_A 68 --MTRN-VITAHEDEPVDHVAIKMSKY--NISGVPVVDDYRRVVGIVTSEDIS 115 (122)
T ss_dssp --SBSS-CCCEETTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHH
T ss_pred --hcCC-CeEECCCCCHHHHHHHHHHh--CCCeEEEECCCCCEEEEEeHHHHH
Confidence 3466 88999999999999999875 458999999999999999988763
No 26
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=98.59 E-value=1.9e-07 Score=76.38 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=86.4
Q ss_pred ceEEeCCCCchhHHHHHHh-cCccEEEEecCCc-ccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297 96 IVRHLKPSASLLEAVDLLL-GGVQNLVILPAGI-KLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN 173 (379)
Q Consensus 96 ll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~-k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~ 173 (379)
.+..+.|++++.||++.|. ++.++++|++... ++ -.=++|..|+++++..... +..++.
T Consensus 14 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~--------------~~Givt~~dl~~~~~~~~~-----~~~~v~ 74 (141)
T 2rih_A 14 PPVSLPETATIREVATELAKNRVGLAVLTARDNPKR--------------PVAVVSERDILRAVAQRLD-----LDGPAM 74 (141)
T ss_dssp CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEE--------------EEEEEEHHHHHHHHHTTCC-----TTSBSG
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcce--------------eEEEEEHHHHHHHHhcCCC-----CCCCHH
Confidence 3678999999999999999 5899999986532 11 0129999999999876421 245565
Q ss_pred ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
++ .+++ +..|+.+ +..+|++.|.+. +...+||||.+|+++|-|+..||-.
T Consensus 75 ~~--m~~~-~~~v~~~-~l~~a~~~m~~~--~~~~l~Vvd~~g~~~Giit~~dll~ 124 (141)
T 2rih_A 75 PI--ANSP-ITVLDTD-PVHVAAEKMRRH--NIRHVVVVNKNGELVGVLSIRDLCF 124 (141)
T ss_dssp GG--CBCC-CEEETTS-BHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHS
T ss_pred HH--cCCC-CeEEcCC-CHHHHHHHHHHc--CCeEEEEEcCCCcEEEEEEHHHHHH
Confidence 53 3567 9999999 999999999886 4578999999999999999998855
No 27
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=98.58 E-value=1.6e-07 Score=75.77 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=86.0
Q ss_pred CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhh
Q 041297 170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAY 249 (379)
Q Consensus 170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~ 249 (379)
.++.++ .+++ +..+..+++..+|++.|.+. ..+.+||+| +|+++|-|+..+|... ++. .
T Consensus 4 ~~v~~i--m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd-~~~~~Givt~~dl~~~-------~~~--------~ 62 (133)
T 2ef7_A 4 EIVKEY--MKTQ-VISVTKDAKLNDIAKVMTEK--NIGSVIVVD-GNKPVGIITERDIVKA-------IGK--------G 62 (133)
T ss_dssp CBGGGT--SBCS-CCEEETTCBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHHHH-------HHT--------T
T ss_pred ccHHHh--ccCC-CEEECCCCcHHHHHHHHHhc--CCCEEEEEE-CCEEEEEEcHHHHHHH-------Hhc--------C
Confidence 344443 4566 89999999999999999876 458999999 9999999998877431 000 0
Q ss_pred hccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCC
Q 041297 250 MDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPW 329 (379)
Q Consensus 250 vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~ 329 (379)
.+. . .+ . .+. -...+++|.+.
T Consensus 63 ~~~---------------------------------~-~~------v-~~~------------------~~~~~~~v~~~ 83 (133)
T 2ef7_A 63 KSL---------------------------------E-TK------A-EEF------------------MTASLITIRED 83 (133)
T ss_dssp CCT---------------------------------T-CB------G-GGT------------------SEECCCCEETT
T ss_pred CCc---------------------------------c-cC------H-HHH------------------cCCCCEEECCC
Confidence 000 0 00 0 000 11357899999
Q ss_pred CcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297 330 SSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK 365 (379)
Q Consensus 330 SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~ 365 (379)
.+|.+++.++..++.+++.|+|++|.++|+|+..--
T Consensus 84 ~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dl 119 (133)
T 2ef7_A 84 SPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDI 119 (133)
T ss_dssp SBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHH
Confidence 999999999999999999999999999999997543
No 28
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=98.57 E-value=4.9e-08 Score=81.23 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=89.3
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL 164 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l 164 (379)
|.++..+. .-+..+.|++++.||++.|. +|+++++|++...+- .=++|..|+++++...-...
T Consensus 17 v~dim~p~-~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~---------------~Giit~~dl~~~~~~~~~~~ 80 (156)
T 3ctu_A 17 EETFLTPA-KNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQF---------------VGTIGLRDIMAYQMEHDLSQ 80 (156)
T ss_dssp GGGGEEEG-GGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBE---------------EEEEEHHHHHHHHHHHTCCH
T ss_pred HHHHcCcc-cCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEE---------------EEEEcHHHHHHHHHhccccc
Confidence 55555421 23678999999999999999 689999998643211 11999999999998732211
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
..+...++.++ .+++ +..|..+++..+|++.|.+. ..+||||.+|+++|-||..||-.
T Consensus 81 ~~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~~~~~----~~lpVvd~~g~~~Giit~~dil~ 138 (156)
T 3ctu_A 81 EIMADTDIVHM--TKTD-VAVVSPDFTITEVLHKLVDE----SFLPVVDAEGIFQGIITRKSILK 138 (156)
T ss_dssp HHHTTSBGGGG--CBCS-CCCBCSSCCHHHHHHHTTTS----SEEEEECTTSBEEEEEETTHHHH
T ss_pred cccccCcHHHh--ccCC-ceeeCCCCcHHHHHHHHHHc----CeEEEEcCCCeEEEEEEHHHHHH
Confidence 12235566653 4567 88999999999999999764 26999999999999999888744
No 29
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=98.55 E-value=5.6e-08 Score=83.83 Aligned_cols=118 Identities=9% Similarity=0.015 Sum_probs=87.3
Q ss_pred CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhh
Q 041297 170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAY 249 (379)
Q Consensus 170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~ 249 (379)
.++.++ .+++ +..|..+++..+|++.|.+. ..+.+||+|.+|+++|-|+..+|...-.
T Consensus 9 ~~v~~i--m~~~-~~~v~~~~~l~ea~~~~~~~--~~~~~pVvd~~g~~vGivt~~dl~~~~~----------------- 66 (184)
T 1pvm_A 9 MRVEKI--MNSN-FKTVNWNTTVFDAVKIMNEN--HLYGLVVKDDNGNDVGLLSERSIIKRFI----------------- 66 (184)
T ss_dssp CBGGGT--SBTT-CCEEETTCBHHHHHHHHHHH--TCCEEEEECTTSCEEEEEEHHHHHHHTG-----------------
T ss_pred cCHHHh--cCCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEeHHHHHHHHh-----------------
Confidence 455553 4567 99999999999999999886 4589999999999999999888743100
Q ss_pred hccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCC
Q 041297 250 MDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPW 329 (379)
Q Consensus 250 vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~ 329 (379)
..+ ... ...+ . .+ --+..++++.+.
T Consensus 67 -~~~----------------------------~~~-~~~~------v-~~------------------im~~~~~~v~~~ 91 (184)
T 1pvm_A 67 -PRN----------------------------KKP-DEVP------I-RL------------------VMRKPIPKVKSD 91 (184)
T ss_dssp -GGC----------------------------CCG-GGSB------G-GG------------------TSBSSCCEEETT
T ss_pred -hcc----------------------------cCc-ccCC------H-HH------------------HhCCCCcEECCC
Confidence 000 000 0000 0 00 011356899999
Q ss_pred CcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 330 SSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 330 SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
.+|.+++.++..|+++++.|+|++|.++|+|+..-
T Consensus 92 ~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~d 126 (184)
T 1pvm_A 92 YDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTD 126 (184)
T ss_dssp CBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHH
T ss_pred CCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHH
Confidence 99999999999999999999999999999999753
No 30
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=98.55 E-value=1.1e-07 Score=78.64 Aligned_cols=117 Identities=10% Similarity=0.052 Sum_probs=87.9
Q ss_pred CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhh
Q 041297 168 PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDL 246 (379)
Q Consensus 168 p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf 246 (379)
...++.++=--..+ +..++++++..+|++.|++. ..+.+||||.+ |+++|-|+..||...
T Consensus 21 ~~~~v~diM~~~~~-~~~v~~~~~~~~a~~~m~~~--~~~~~pVvd~~~~~lvGivt~~dl~~~---------------- 81 (148)
T 3lv9_A 21 EEKKIREIMVPRTD-MVCIYESDSEEKILAILKEE--GVTRYPVCRKNKDDILGFVHIRDLYNQ---------------- 81 (148)
T ss_dssp GTCBGGGTSEETTT-CCCEETTCCHHHHHHHHHHS--CCSEEEEESSSTTSEEEEEEHHHHHHH----------------
T ss_pred CCCCHHHccccHHH-eEEECCCCCHHHHHHHHHHC--CCCEEEEEcCCCCcEEEEEEHHHHHHH----------------
Confidence 35566654211126 99999999999999999986 55899999998 899999988777430
Q ss_pred hhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceee
Q 041297 247 MAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVC 326 (379)
Q Consensus 247 ~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC 326 (379)
+.. ... ... .+. - ..++++
T Consensus 82 ---~~~----------------------------~~~--~~v---------~~~------------------m-~~~~~v 100 (148)
T 3lv9_A 82 ---KIN----------------------------ENK--IEL---------EEI------------------L-RDIIYI 100 (148)
T ss_dssp ---HHH----------------------------HSC--CCG---------GGT------------------C-BCCEEE
T ss_pred ---Hhc----------------------------CCC--ccH---------HHh------------------c-CCCeEE
Confidence 000 000 000 000 1 347899
Q ss_pred cCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 327 YPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 327 ~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
.+..+|.+++..+..|+.+++-|+|++|.++|+|+..-
T Consensus 101 ~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~d 138 (148)
T 3lv9_A 101 SENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIED 138 (148)
T ss_dssp ETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence 99999999999999999999999999999999998654
No 31
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=98.55 E-value=1.6e-07 Score=75.65 Aligned_cols=106 Identities=18% Similarity=0.273 Sum_probs=84.8
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+.|++++.||++.|. +|.+.++|+++ .+- .=++|..|+++++.+... ...++.++
T Consensus 14 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~---------------~Givt~~dl~~~~~~~~~-----~~~~v~~~ 72 (133)
T 2ef7_A 14 VISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKP---------------VGIITERDIVKAIGKGKS-----LETKAEEF 72 (133)
T ss_dssp CCEEETTCBHHHHHHHHHHHTCSEEEEEET-TEE---------------EEEEEHHHHHHHHHTTCC-----TTCBGGGT
T ss_pred CEEECCCCcHHHHHHHHHhcCCCEEEEEEC-CEE---------------EEEEcHHHHHHHHhcCCC-----cccCHHHH
Confidence 667999999999999998 69999999872 111 129999999999876422 24556654
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+++ +..|+.+++..+|++.|.+. ....+||||.+|+++|-||..||-
T Consensus 73 --~~~~-~~~v~~~~~l~~~~~~~~~~--~~~~l~Vvd~~g~~~Giit~~dll 120 (133)
T 2ef7_A 73 --MTAS-LITIREDSPITGALALMRQF--NIRHLPVVDDKGNLKGIISIRDIT 120 (133)
T ss_dssp --SEEC-CCCEETTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHH
T ss_pred --cCCC-CEEECCCCCHHHHHHHHHHc--CCCEEEEECCCCeEEEEEEHHHHH
Confidence 3456 88999999999999999876 447899999999999999988764
No 32
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=98.54 E-value=4.4e-07 Score=73.74 Aligned_cols=108 Identities=11% Similarity=0.054 Sum_probs=87.4
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc----ccccc
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP----CFCSF 90 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~----VS~li 90 (379)
+-+++....|+.+|++.+.+++...+||-+.+ .++++|+|+.-|++-++.. |+++.
T Consensus 16 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~--------------------~~~~~Givt~~dl~~~~~~~~~~v~~~m 75 (129)
T 3jtf_A 16 RMDLLDISQPLPQLLATIIETAHSRFPVYEDD--------------------RDNIIGILLAKDLLRYMLEPALDIRSLV 75 (129)
T ss_dssp GCCCEETTSCHHHHHHHHHHSCCSEEEEESSS--------------------TTCEEEEEEGGGGGGGGTCTTSCGGGGC
T ss_pred HeEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------------------CCcEEEEEEHHHHHhHhccCCcCHHHHh
Confidence 34677889999999999999999999998732 2479999999999987753 77776
Q ss_pred cCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297 91 AKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI 161 (379)
Q Consensus 91 ~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i 161 (379)
.+ +..+.|+++|.||++.|. ++.++++|+++..+- .=++|++||++.|.+-|
T Consensus 76 ~~----~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~---------------~Giit~~Dil~~l~gei 128 (129)
T 3jtf_A 76 RP----AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGI---------------SGLVTMEDVLEQIVGDI 128 (129)
T ss_dssp BC----CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCE---------------EEEEEHHHHHHHHHHTC
T ss_pred CC----CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCE---------------EEEEEHHHHHHHHhCCC
Confidence 32 568999999999999999 589999998753221 11999999999998754
No 33
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=98.54 E-value=1.7e-07 Score=80.31 Aligned_cols=119 Identities=14% Similarity=0.051 Sum_probs=87.5
Q ss_pred CCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhh
Q 041297 167 TPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGD 245 (379)
Q Consensus 167 ~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgd 245 (379)
+...++.++=--.++ +..|+.++++.+|++.|++. ..+.+||||.+ |+++|-|+..||...
T Consensus 39 l~~~~v~diM~~~~~-~~~v~~~~~v~~a~~~m~~~--~~~~~pVvd~~~~~lvGivt~~dl~~~--------------- 100 (172)
T 3lhh_A 39 LDERTISSLMVPRSD-IVFLDLNLPLDANLRTVMQS--PHSRFPVCRNNVDDMVGIISAKQLLSE--------------- 100 (172)
T ss_dssp ----CTTTTSEEGGG-CCCEETTSCHHHHHHHHHTC--CCSEEEEESSSTTSEEEEEEHHHHHHH---------------
T ss_pred cCCCCHHHhCccHHH-eEEEcCCCCHHHHHHHHHhC--CCCEEEEEeCCCCeEEEEEEHHHHHHH---------------
Confidence 345566665322256 89999999999999999885 55899999998 999999988777440
Q ss_pred hhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCcccee
Q 041297 246 LMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIV 325 (379)
Q Consensus 246 f~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vt 325 (379)
... + .. .+ - .+. . ..+++
T Consensus 101 ----~~~------------------~----------~~----~~------v-~~i-----------------m--~~~~~ 118 (172)
T 3lhh_A 101 ----SIA------------------G----------ER----LE------L-VDL-----------------V--KNCNF 118 (172)
T ss_dssp ----HHT------------------T----------CC----CC------G-GGG-----------------C--BCCEE
T ss_pred ----Hhh------------------c----------Cc----cc------H-HHH-----------------h--cCCeE
Confidence 000 0 00 00 0 010 1 45789
Q ss_pred ecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297 326 CYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK 365 (379)
Q Consensus 326 C~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~ 365 (379)
+.+..+|.+++..+..|+.+++=|+|++|.++|+|+...-
T Consensus 119 v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Di 158 (172)
T 3lhh_A 119 VPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDM 158 (172)
T ss_dssp EETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred eCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHH
Confidence 9999999999999999999999999999999999987543
No 34
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=98.54 E-value=1.7e-07 Score=79.29 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=90.9
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL 164 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l 164 (379)
|+++..+...-+..+.|++++.||++.|. +|.+.++|++...+- .=++|..|+++++.......
T Consensus 26 v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~~~~ 90 (165)
T 3fhm_A 26 VKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVV---------------LGIFTERDLVKAVAGQGAAS 90 (165)
T ss_dssp HHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCE---------------EEEEEHHHHHHHHHHHGGGG
T ss_pred HHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeE---------------EEEEEHHHHHHHHHhcCCcc
Confidence 66666431123678999999999999998 689999998743211 11999999999998764222
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
...++.++ ..++ +..|+.+++..+|++.|.+. +...+||||. |+++|-|+..||-
T Consensus 91 ---~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~-g~~~Giit~~dil 145 (165)
T 3fhm_A 91 ---LQQSVSVA--MTKN-VVRCQHNSTTDQLMEIMTGG--RFRHVPVEEN-GRLAGIISIGDVV 145 (165)
T ss_dssp ---GTSBGGGT--SBSS-CCCBCTTCBHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHH
T ss_pred ---ccCCHHHH--hcCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEEEC-CEEEEEEEHHHHH
Confidence 24555554 3466 88999999999999999876 4589999999 9999999988774
No 35
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=98.53 E-value=2e-07 Score=78.52 Aligned_cols=115 Identities=10% Similarity=0.109 Sum_probs=86.7
Q ss_pred CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCC-cEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297 169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEG-RLVGDISPFSLNSCDETVAAAIATLLAGDLM 247 (379)
Q Consensus 169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dG-kLIGeISa~~L~~CDet~a~A~atLSAgdf~ 247 (379)
..++.++=--.++ +..++.+++..+|++.|++. ..+.+||+|.+| +++|-|+..||....... ....+
T Consensus 37 ~~~v~diM~~~~~-~~~v~~~~~i~~a~~~m~~~--~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~----~~~~v---- 105 (156)
T 3oi8_A 37 DLEVRDAMITRSR-MNVLKENDSIERITAYVIDT--AHSRFPVIGEDKDEVLGILHAKDLLKYMFNP----EQFHL---- 105 (156)
T ss_dssp TCBGGGTCEEGGG-CCCEETTCCHHHHHHHHHHH--CCSEEEEESSSTTCEEEEEEGGGGGGGSSCG----GGCCH----
T ss_pred CCCHhheeeeHHH-eEEECCCCCHHHHHHHHHHC--CCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC----CcccH----
Confidence 4556655211236 89999999999999999885 558999999985 999999998886521000 00000
Q ss_pred hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297 248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY 327 (379)
Q Consensus 248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~ 327 (379)
.+. + ..++++.
T Consensus 106 --------------------------------------------------~~i----------------m---~~~~~v~ 116 (156)
T 3oi8_A 106 --------------------------------------------------KSI----------------L---RPAVFVP 116 (156)
T ss_dssp --------------------------------------------------HHH----------------C---BCCCEEE
T ss_pred --------------------------------------------------HHH----------------c---CCCEEEC
Confidence 000 0 1268999
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
+..+|.+++..+..|+.+++=|+|++|.++|+|+..
T Consensus 117 ~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~ 152 (156)
T 3oi8_A 117 EGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFE 152 (156)
T ss_dssp TTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHH
Confidence 999999999999999999999999999999999853
No 36
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=98.52 E-value=3e-07 Score=75.26 Aligned_cols=114 Identities=10% Similarity=0.029 Sum_probs=85.3
Q ss_pred CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCC--cEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297 170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEG--RLVGDISPFSLNSCDETVAAAIATLLAGDLM 247 (379)
Q Consensus 170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dG--kLIGeISa~~L~~CDet~a~A~atLSAgdf~ 247 (379)
.++.++ ..++ +..+..+++..+|++.|.+. ..+.+||||.+| +++|-|+..+|... ++
T Consensus 5 ~~v~~i--m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~~~Givt~~dl~~~-------~~-------- 64 (141)
T 2rih_A 5 IRTSEL--LKRP-PVSLPETATIREVATELAKN--RVGLAVLTARDNPKRPVAVVSERDILRA-------VA-------- 64 (141)
T ss_dssp CBGGGG--CCSC-CEEEETTCBHHHHHHHHHHH--TCSEEEEEETTEEEEEEEEEEHHHHHHH-------HH--------
T ss_pred eEHHHH--hcCC-CeEeCCCCcHHHHHHHHHHc--CCCEEEEEcCCCcceeEEEEEHHHHHHH-------Hh--------
Confidence 344443 4567 99999999999999999886 458999999999 99999988776430 00
Q ss_pred hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297 248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY 327 (379)
Q Consensus 248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~ 327 (379)
.. . .. . .+ . .+. -...+++|.
T Consensus 65 ---~~-------------------~--------~~---~-~~------v-~~~------------------m~~~~~~v~ 85 (141)
T 2rih_A 65 ---QR-------------------L--------DL---D-GP------A-MPI------------------ANSPITVLD 85 (141)
T ss_dssp ---TT-------------------C--------CT---T-SB------S-GGG------------------CBCCCEEET
T ss_pred ---cC-------------------C--------CC---C-CC------H-HHH------------------cCCCCeEEc
Confidence 00 0 00 0 00 0 010 113578999
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
+. +|.+++.++..++.+++.|+|++|.++|+|+..
T Consensus 86 ~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~ 120 (141)
T 2rih_A 86 TD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIR 120 (141)
T ss_dssp TS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred CC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHH
Confidence 99 999999999999999999999999999999864
No 37
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=98.52 E-value=2.3e-07 Score=78.22 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=85.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccC----CCCCCc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLN----PTPNQP 171 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~----p~p~~S 171 (379)
+..+.|++++.||++.|. +|+..++|++...+- .=++|..|+++++....+.+. .....+
T Consensus 15 ~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~l---------------vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~ 79 (160)
T 2o16_A 15 PHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKL---------------LGIVSQRDLLAAQESSLQRSAQGDSLAFETP 79 (160)
T ss_dssp CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBE---------------EEEEEHHHHHHHHHHHCC---------CCCB
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcE---------------EEEEeHHHHHHHHHHhhcccccccchhcccC
Confidence 567899999999999998 689999998742211 119999999999987544321 123445
Q ss_pred ccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 172 INSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 172 I~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
+.++ .+++ +..|+.++++.+|++.|.+. ....+||||. |+++|-||..||-.
T Consensus 80 v~~i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~-g~lvGiit~~dil~ 131 (160)
T 2o16_A 80 LFEV--MHTD-VTSVAPQAGLKESAIYMQKH--KIGCLPVVAK-DVLVGIITDSDFVT 131 (160)
T ss_dssp HHHH--SCSC-EEEBCTTSBHHHHHHHHHHT--TCSCEEEEET-TEEEEEECHHHHHH
T ss_pred HHHH--hcCC-CeEECCCCCHHHHHHHHHHh--CCCEEEEEEC-CEEEEEEEHHHHHH
Confidence 5553 4467 99999999999999999885 4478999998 99999999887643
No 38
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.51 E-value=2.2e-07 Score=77.74 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=84.8
Q ss_pred cccCCcEEEEecCCchhcHHHHHHhccccCce-eEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCC
Q 041297 177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTS-VAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRP 255 (379)
Q Consensus 177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tA-VAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~p 255 (379)
+.+++ +..|..+++..+|++.|.+. ..+. +||||.+ +++|-|+..+|...-. ..+ ..|+..
T Consensus 21 im~~~-~~~v~~~~tl~ea~~~m~~~--~~~~~~~Vvd~~-~~vGivt~~dl~~~~~------~~~-----~~~~~~--- 82 (157)
T 1o50_A 21 LISLK-PTVVEEDTPIEEIVDRILED--PVTRTVYVARDN-KLVGMIPVMHLLKVSG------FHF-----FGFIPK--- 82 (157)
T ss_dssp SSCCC-CEEECTTCBHHHHHHHHHHS--TTCCEEEEEETT-EEEEEEEHHHHHHHHH------HHH-----HCCCC----
T ss_pred cccCC-CceECCCCCHHHHHHHHHhC--CCCccEEEEECC-EEEEEEEHHHHHHHHh------hhH-----Hhhhcc---
Confidence 35667 99999999999999999875 4588 9999988 9999999988854110 000 001110
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHH
Q 041297 256 LKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAV 335 (379)
Q Consensus 256 pe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAV 335 (379)
++. +... . .. . .....+.--.. ++++.+..+|.++
T Consensus 83 ~~~--------------------~~~~-----~---------~~------~----~~~~v~~im~~-~~~v~~~~~l~~a 117 (157)
T 1o50_A 83 EEL--------------------IRSS-----M---------KR------L----IAKNASEIMLD-PVYVHMDTPLEEA 117 (157)
T ss_dssp --------------------------C-----C---------CC------C----SSCBHHHHCBC-CCCBCTTSBHHHH
T ss_pred HHH--------------------HHHH-----H---------HH------H----cCCcHHHHcCC-CeEECCCCCHHHH
Confidence 000 0000 0 00 0 00001100123 7899999999999
Q ss_pred HHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 336 IMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 336 MaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
+..+..++.+++.|+|++|.++|+|+...
T Consensus 118 ~~~m~~~~~~~lpVvd~~g~~vGiit~~d 146 (157)
T 1o50_A 118 LKLMIDNNIQEMPVVDEKGEIVGDLNSLE 146 (157)
T ss_dssp HHHHHHHTCSEEEEECTTSCEEEEEEHHH
T ss_pred HHHHHHCCCcEEEEEcCCCEEEEEEEHHH
Confidence 99999999999999999999999999643
No 39
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=98.51 E-value=1.3e-07 Score=76.51 Aligned_cols=117 Identities=9% Similarity=0.114 Sum_probs=85.8
Q ss_pred CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc-CCCcHHHHHHHHhcchhhhh
Q 041297 169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL-NSCDETVAAAIATLLAGDLM 247 (379)
Q Consensus 169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L-~~CDet~a~A~atLSAgdf~ 247 (379)
..++.+ +.+++ +..++.+++..+|+++|++. ..+.+||||.+|+++|-|+..+| ...
T Consensus 7 ~~~v~~--im~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~~----------------- 64 (138)
T 2p9m_A 7 NIKVKD--VMTKN-VITAKRHEGVVEAFEKMLKY--KISSLPVIDDENKVIGIVTTTDIGYNL----------------- 64 (138)
T ss_dssp TCBGGG--TSBCS-CCCEETTSBHHHHHHHHHHH--TCCEEEEECTTCBEEEEEEHHHHHHHH-----------------
T ss_pred cCCHHH--hhcCC-ceEECCCCcHHHHHHHHHHC--CCcEEEEECCCCeEEEEEEHHHHHHHH-----------------
Confidence 344554 34567 89999999999999999876 45899999999999999988776 320
Q ss_pred hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297 248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY 327 (379)
Q Consensus 248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~ 327 (379)
+..+ . . ...+ . .+. -...+++|.
T Consensus 65 --~~~~----------------------------~-~-~~~~------v-~~~------------------m~~~~~~v~ 87 (138)
T 2p9m_A 65 --IRDK----------------------------Y-T-LETT------I-GDV------------------MTKDVITIH 87 (138)
T ss_dssp --TTTC----------------------------C-C-SSCB------H-HHH------------------SCSSCCCEE
T ss_pred --Hhhc----------------------------c-c-CCcC------H-HHH------------------hCCCcEEEC
Confidence 0000 0 0 0000 0 000 113468999
Q ss_pred CCCcHHHHHHHHHHcC-----CcEEEEeeCCCCcccceEeeh
Q 041297 328 PWSSLMAVIMQALARR-----DRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 328 p~SSLvAVMaQAlaHR-----V~~vWVvd~e~~l~~~v~~~~ 364 (379)
+..+|.+++.++..|+ ++++.|+|++|.++|+|+..-
T Consensus 88 ~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~d 129 (138)
T 2p9m_A 88 EDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGD 129 (138)
T ss_dssp TTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHH
T ss_pred CCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHH
Confidence 9999999999999999 999999999999999999754
No 40
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=98.50 E-value=1.3e-07 Score=76.68 Aligned_cols=116 Identities=9% Similarity=0.062 Sum_probs=88.4
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL 164 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l 164 (379)
|+++.-+. ..+..+.|++++-||++.|. +|..+++|++....+ -.=++|..|+++++.+..
T Consensus 8 v~~iM~~~-~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~--------------~~Givt~~dl~~~~~~~~--- 69 (130)
T 3i8n_A 8 VTQVMTPR-PVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDN--------------IIGFVHRLELFKMQQSGS--- 69 (130)
T ss_dssp CTTTSCCB-CCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTC--------------EEEECCHHHHHHHHHTTT---
T ss_pred HhhCCCcH-HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCc--------------EEEEEEHHHHHHHHhcCC---
Confidence 44444321 33668999999999999999 588899887643111 011999999999987642
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+..++.++= ++ +..|..+++..+|++.|.+. +...+||||.+|+++|-|+..||-
T Consensus 70 ---~~~~v~~~m---~~-~~~v~~~~~l~~~~~~m~~~--~~~~~~Vvd~~g~~vGivt~~dil 124 (130)
T 3i8n_A 70 ---GQKQLGAVM---RP-IQVVLNNTALPKVFDQMMTH--RLQLALVVDEYGTVLGLVTLEDIF 124 (130)
T ss_dssp ---TTSBHHHHS---EE-CCEEETTSCHHHHHHHHHHH--TCCEEEEECTTSCEEEEEEHHHHH
T ss_pred ---CcCCHHHHh---cC-CcCcCCCCcHHHHHHHHHHc--CCeEEEEEcCCCCEEEEEEHHHHH
Confidence 255666653 45 78999999999999999885 558899999999999999988763
No 41
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=98.50 E-value=1.4e-07 Score=76.27 Aligned_cols=115 Identities=22% Similarity=0.222 Sum_probs=87.2
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHH-HHHHHhhhcc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDL-IRYFLNFIGL 163 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDV-vRFLl~~ig~ 163 (379)
|+++.-+ .+..+.|++++-||++.|. +|.+.++|+++..+- .=++|..|+ ++++...
T Consensus 10 v~~im~~---~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~--- 68 (138)
T 2p9m_A 10 VKDVMTK---NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKV---------------IGIVTTTDIGYNLIRDK--- 68 (138)
T ss_dssp GGGTSBC---SCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBE---------------EEEEEHHHHHHHHTTTC---
T ss_pred HHHhhcC---CceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeE---------------EEEEEHHHHHHHHHhhc---
Confidence 5666542 3567899999999999998 689999988643211 119999999 8887642
Q ss_pred cCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhcccc-----CceeEEEcCCCcEEeeeCccccC
Q 041297 164 LNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIK-----QTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 164 l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~-----~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.....++.++ .+++ +..++.+++..+|++.|.+. + ...+||||++|+++|-|+..||-
T Consensus 69 --~~~~~~v~~~--m~~~-~~~v~~~~~l~~~~~~~~~~--~~~~~~~~~l~Vvd~~g~~~Giit~~dll 131 (138)
T 2p9m_A 69 --YTLETTIGDV--MTKD-VITIHEDASILEAIKKMDIS--GKKEEIINQLPVVDKNNKLVGIISDGDII 131 (138)
T ss_dssp --CCSSCBHHHH--SCSS-CCCEETTSBHHHHHHHHTCC-------CCCEEEEECTTSBEEEEEEHHHHH
T ss_pred --ccCCcCHHHH--hCCC-cEEECCCCCHHHHHHHHHhc--CCccccccEEEEECCCCeEEEEEEHHHHH
Confidence 1234555554 4466 89999999999999999875 3 47899999999999999988763
No 42
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=98.50 E-value=4.2e-07 Score=75.91 Aligned_cols=115 Identities=10% Similarity=0.059 Sum_probs=88.5
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEe-cCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVIL-PAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGL 163 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi-~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~ 163 (379)
|+++.-+. .-+..+.|++++-||++.|. +|.++++|+ +....+ . .=++|..|+++++...-
T Consensus 22 v~~iM~~~-~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~--------l------vGivt~~dl~~~~~~~~-- 84 (153)
T 3oco_A 22 ASDVMVDR-TSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDK--------I------IGYAYNYDIVRQARIDD-- 84 (153)
T ss_dssp HHHHSEEG-GGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEE--------E------EEEEEHHHHHHHHHHHT--
T ss_pred eeeEecch-hheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCc--------E------EEEEEHHHHHhHHhcCC--
Confidence 55554321 23567999999999999999 689999998 432111 0 11999999999987652
Q ss_pred cCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 164 LNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 164 l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
..++.++= ++ +..|..+++..+|++.|.+. +...+||||.+|+++|-|+..||-
T Consensus 85 -----~~~v~~~m---~~-~~~v~~~~~l~~~~~~m~~~--~~~~lpVvd~~g~~vGivt~~dil 138 (153)
T 3oco_A 85 -----KAKISTIM---RD-IVSVPENMKVPDVMEEMSAH--RVPMAIVIDEYGGTSGIITDKDVY 138 (153)
T ss_dssp -----TSBGGGTC---BC-CEEEETTSBHHHHHHHHHHT--TCSCEEEECTTSCEEEEECHHHHH
T ss_pred -----CCcHHHHh---CC-CeEECCCCCHHHHHHHHHHc--CCcEEEEEeCCCCEEEEeeHHHHH
Confidence 45666653 56 89999999999999999886 448899999999999999988774
No 43
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=98.49 E-value=2.8e-07 Score=76.68 Aligned_cols=110 Identities=11% Similarity=0.129 Sum_probs=84.2
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+.|++++.||++.|. +|...++|++...+- .=++|..|+++++..... .....++.++
T Consensus 31 ~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~---------------vGivt~~dl~~~~~~~~~---~~~~~~v~~~ 92 (152)
T 2uv4_A 31 IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRV---------------VDIYSKFDVINLAAEKTY---NNLDVSVTKA 92 (152)
T ss_dssp CCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBE---------------EEEEEHHHHHHHHHCSSC---CCTTSBGGGG
T ss_pred ceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcE---------------EEEEeHHHHHHHhcchhh---hhhcchHHHH
Confidence 567899999999999998 588899888743211 119999999999875321 1223455554
Q ss_pred ccc----cCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 176 NII----DDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 176 G~I----~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
=-. .++ +..|..+++..+|++.|.+. +...+||||.+|+++|-|+..||
T Consensus 93 m~~~~~~~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~~vGiit~~di 145 (152)
T 2uv4_A 93 LQHRSHYFEG-VLKCYLHETLETIINRLVEA--EVHRLVVVDENDVVKGIVSLSDI 145 (152)
T ss_dssp GGTCCHHHHT-CSEECTTSBHHHHHHHHHHH--TCSEEEEECTTSBEEEEEEHHHH
T ss_pred HhhhhcccCC-CeEECCCCcHHHHHHHHHHc--CCeEEEEECCCCeEEEEEEHHHH
Confidence 211 156 88999999999999999876 45889999999999999998876
No 44
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=98.49 E-value=7.4e-08 Score=82.39 Aligned_cols=110 Identities=14% Similarity=0.091 Sum_probs=85.7
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..|+|++++-||+++|. +|..++.|+++..+-. . ++|..|+++++...-.........+|.++
T Consensus 27 v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lv---------G------iit~~Di~~~~~~~~~~~~~~~~~~v~~i 91 (156)
T 3k6e_A 27 LAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFV---------G------TIGLRDIMAYQMEHDLSQEIMADTDIVHM 91 (156)
T ss_dssp SCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEE---------E------EEEHHHHHHHHHHHTCCHHHHTTSBGGGT
T ss_pred eEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEE---------E------EEEecchhhhhhhcccccccccccCHHHh
Confidence 678999999999999999 7999999986532211 1 89999999999875433333344555543
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+++ +..|..+++..+|+++|.+. .-+||||.+|+++|=|+..|+-
T Consensus 92 --m~~~-~~~v~~~~~l~~~~~~m~~~----~~lpVVd~~g~l~GiiT~~Dil 137 (156)
T 3k6e_A 92 --TKTD-VAVVSPDFTITEVLHKLVDE----SFLPVVDAEGIFQGIITRKSIL 137 (156)
T ss_dssp --CBCS-CCCBCTTCCHHHHHHHTTTS----SEEEEECTTSBEEEEEEHHHHH
T ss_pred --hcCC-ceecccccHHHHHHHHHHHc----CCeEEEecCCEEEEEEEHHHHH
Confidence 4567 89999999999999999652 3499999999999999988873
No 45
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=98.48 E-value=1.3e-07 Score=79.85 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=83.5
Q ss_pred ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297 178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK 257 (379)
Q Consensus 178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe 257 (379)
.+++ +..|..+++..+|+++|.+. ..+.+||||.+|+++|-|+..+|...... . +..+..
T Consensus 11 m~~~-~~~v~~~~tl~~a~~~m~~~--~~~~~pVvd~~~~lvGivt~~dl~~~~~~------~-----~~~~~~------ 70 (160)
T 2o16_A 11 MTRH-PHTLLRTHTLNDAKHLMEAL--DIRHVPIVDANKKLLGIVSQRDLLAAQES------S-----LQRSAQ------ 70 (160)
T ss_dssp SEES-CCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHHHHHHH------H-----CC----------
T ss_pred hcCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEeHHHHHHHHHH------h-----hccccc------
Confidence 4566 88999999999999999876 45899999999999999998887541100 0 000000
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297 258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM 337 (379)
Q Consensus 258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa 337 (379)
+ .. . . .+. . .+.--...+++|.+..+|..++.
T Consensus 71 -------------~---------~~---~-~---------~~~-----~--------v~~im~~~~~~v~~~~~l~~a~~ 102 (160)
T 2o16_A 71 -------------G---------DS---L-A---------FET-----P--------LFEVMHTDVTSVAPQAGLKESAI 102 (160)
T ss_dssp ----------------------------------------CCC-----B--------HHHHSCSCEEEBCTTSBHHHHHH
T ss_pred -------------c---------cc---h-h---------ccc-----C--------HHHHhcCCCeEECCCCCHHHHHH
Confidence 0 00 0 0 000 0 00001135789999999999999
Q ss_pred HHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 338 QALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 338 QAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
.+..++++++.|+|+ |.++|+|+...
T Consensus 103 ~m~~~~~~~lpVvd~-g~lvGiit~~d 128 (160)
T 2o16_A 103 YMQKHKIGCLPVVAK-DVLVGIITDSD 128 (160)
T ss_dssp HHHHTTCSCEEEEET-TEEEEEECHHH
T ss_pred HHHHhCCCEEEEEEC-CEEEEEEEHHH
Confidence 999999999999999 99999999754
No 46
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=98.47 E-value=1.5e-07 Score=78.10 Aligned_cols=136 Identities=16% Similarity=0.114 Sum_probs=88.7
Q ss_pred EeeHHHHHHHHHhhhcccCCCCCCcccccccccC--CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCc
Q 041297 147 WLTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDD--AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISP 224 (379)
Q Consensus 147 ~LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~I~~--~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa 224 (379)
.++.+|..+|--+ +.++....+++.++= ++ + +..|..++++.+|++.|.+. ..+.+||||.+|+++|-|+.
T Consensus 7 ~f~~~~~~~~~~~--~~l~~~l~~~v~dim--~~~~~-~~~v~~~~~~~~a~~~m~~~--~~~~~~Vvd~~~~~~Givt~ 79 (149)
T 3k2v_A 7 GFTAEDFALSHPG--GALGRKLLLRVNDIM--HTGDE-IPHVGLQATLRDALLEITRK--NLGMTAICDDDMNIIGIFTD 79 (149)
T ss_dssp ---------------CHHHHHTTSBGGGTS--BCGGG-SCEECTTCBHHHHHHHHHHH--TSSEEEEECTTCBEEEEEEH
T ss_pred CCCHHHhhhcCCC--chhchhcccCHHHHh--cCCCC-CeEECCCCcHHHHHHHHHhC--CCcEEEEECCCCcEEEEecH
Confidence 4455665555432 222333346777753 44 6 89999999999999999886 55899999999999999988
Q ss_pred cccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCcccccccc
Q 041297 225 FSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGS 304 (379)
Q Consensus 225 ~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~ 304 (379)
.+|.. .+..+ ..+. .... ++.
T Consensus 80 ~dl~~-------------------~~~~~--------------------------------~~~~---~~~v-~~~---- 100 (149)
T 3k2v_A 80 GDLRR-------------------VFDTG--------------------------------VDMR---DASI-ADV---- 100 (149)
T ss_dssp HHHHH-------------------HHCSS--------------------------------SCCT---TCBH-HHH----
T ss_pred HHHHH-------------------HHhcC--------------------------------CCcc---cCcH-HHH----
Confidence 77743 01100 0000 0000 000
Q ss_pred CCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 305 ARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 305 ~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
-...+++|++..+|.+++..+..|+++++.|+|++ .++|+|+..
T Consensus 101 --------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~ 144 (149)
T 3k2v_A 101 --------------MTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMH 144 (149)
T ss_dssp --------------SEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHH
T ss_pred --------------cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHH
Confidence 11346899999999999999999999999999987 999999853
No 47
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.47 E-value=7e-07 Score=79.65 Aligned_cols=116 Identities=9% Similarity=0.054 Sum_probs=87.9
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchh
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAG 244 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAg 244 (379)
+|.+..++.+ +..++ +..|..+++..+|+++|.+. ..+.+||+|.+|+++|-|+..||..... ...+.
T Consensus 8 ~~~~~~~~~~--~~~~~-~~~v~~~~tv~ea~~~m~~~--~~~~~pVvd~~~~l~Givt~~dl~~~~~-------~~~v~ 75 (213)
T 1vr9_A 8 HHHHHMKVKK--WVTQD-FPMVEESATVRECLHRMRQY--QTNECIVKDREGHFRGVVNKEDLLDLDL-------DSSVF 75 (213)
T ss_dssp -----CBGGG--GCBSC-SCEEETTCBHHHHHHHHHHT--TSSEEEEECTTSBEEEEEEGGGGTTSCT-------TSBSG
T ss_pred ccccccCHHH--hhcCC-CeEECCCCcHHHHHHHHHHC--CCCEEEEEcCCCEEEEEEEHHHHHhhcC-------CCcHH
Confidence 3444444433 34566 89999999999999999886 5589999999999999999999975221 00000
Q ss_pred hhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccce
Q 041297 245 DLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAI 324 (379)
Q Consensus 245 df~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~v 324 (379)
|+ -...++
T Consensus 76 ~i------------------------------------------------------------------------m~~~~~ 83 (213)
T 1vr9_A 76 NK------------------------------------------------------------------------VSLPDF 83 (213)
T ss_dssp GG------------------------------------------------------------------------CBCTTC
T ss_pred HH------------------------------------------------------------------------ccCCCE
Confidence 00 012478
Q ss_pred eecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 325 VCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 325 tC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
++.+..+|.+++..+..|+++++-|+|++|.++|+|+..-
T Consensus 84 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~D 123 (213)
T 1vr9_A 84 FVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHD 123 (213)
T ss_dssp CEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHH
T ss_pred EECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHH
Confidence 9999999999999999999999999999999999998753
No 48
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=98.47 E-value=8.8e-08 Score=78.07 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=86.2
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhh----
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNF---- 160 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~---- 160 (379)
|+++..+. ..+..++|++++.||++.|. +|...++|++...+- .=++|..|+++++...
T Consensus 7 v~~im~~~-~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~G~vt~~dl~~~~~~~~~~~ 70 (152)
T 4gqw_A 7 VGEFMTKK-EDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKL---------------VGLVSDYDLLALDSGDSTWK 70 (152)
T ss_dssp GGGTSEES-TTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBE---------------EEEEEHHHHTTCC----CCH
T ss_pred hhhccCCC-CCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeE---------------EEEEEHHHHHHhhcccCccc
Confidence 44454321 23677999999999999998 688899887653211 1289999998764321
Q ss_pred -----hcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 161 -----IGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 161 -----ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
-..+......++.++ .+++ +..|+.+++..+|++.|.+. +...+||||.+|+++|-|+..||-.
T Consensus 71 ~~~~~~~~~~~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~~~~~--~~~~l~Vvd~~g~~~Giit~~dil~ 139 (152)
T 4gqw_A 71 TFNAVQKLLSKTNGKLVGDL--MTPA-PLVVEEKTNLEDAAKILLET--KYRRLPVVDSDGKLVGIITRGNVVR 139 (152)
T ss_dssp HHHHHHTC-----CCBHHHH--SEES-CCCEESSSBHHHHHHHHHHS--SCCEEEEECTTSBEEEEEEHHHHHH
T ss_pred chHHHHHHHHHhccccHHHh--cCCC-ceEECCCCcHHHHHHHHHHC--CCCEEEEECCCCcEEEEEEHHHHHH
Confidence 112222334556554 4566 88899999999999999875 4478999999999999999887743
No 49
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=98.47 E-value=1.9e-07 Score=76.98 Aligned_cols=120 Identities=15% Similarity=0.189 Sum_probs=87.7
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-c
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-L 163 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-~ 163 (379)
|+++..+. ..+..+.|++++-||++.|. +|..+++|++...+- .=++|..|+++++.+..+ .
T Consensus 17 v~~im~~~-~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~---------------~Givt~~dl~~~~~~~~~~~ 80 (150)
T 3lqn_A 17 VKDLMISS-EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKL---------------HGLISTAMILDGILGLERIE 80 (150)
T ss_dssp HHHHSEEG-GGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBE---------------EEEEEHHHHHHHTBCSSSBC
T ss_pred hhhcccCC-CceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCE---------------EEEEEHHHHHHHHHhhcccc
Confidence 55555321 23667999999999999998 689999998643211 119999999999864321 1
Q ss_pred cCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 164 LNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 164 l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+......++.++ .+++ +..|..+++..+|++.|.+. .. +||||.+|+++|-|+..||-
T Consensus 81 ~~~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~~~~~---~~-l~Vvd~~g~~~Giit~~dil 138 (150)
T 3lqn_A 81 FERLEEMKVEQV--MKQD-IPVLKLEDSFAKALEMTIDH---PF-ICAVNEDGYFEGILTRRAIL 138 (150)
T ss_dssp GGGGGGCBGGGT--CBSS-CCEEETTCBHHHHHHHHHHC---SE-EEEECTTCBEEEEEEHHHHH
T ss_pred hhHHhcCCHHHH--hcCC-CceeCCCCCHHHHHHHHHhC---CE-EEEECCCCcEEEEEEHHHHH
Confidence 112234556553 4567 89999999999999999764 23 99999999999999988764
No 50
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=98.47 E-value=5.4e-07 Score=77.16 Aligned_cols=115 Identities=9% Similarity=0.005 Sum_probs=90.1
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL 164 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l 164 (379)
|+++.-+. .-+..+.|++++-||++.|. +|..+++|++....+ -.=++|..|+++++...
T Consensus 44 v~diM~~~-~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~--------------lvGivt~~dl~~~~~~~---- 104 (172)
T 3lhh_A 44 ISSLMVPR-SDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDD--------------MVGIISAKQLLSESIAG---- 104 (172)
T ss_dssp TTTTSEEG-GGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTS--------------EEEEEEHHHHHHHHHTT----
T ss_pred HHHhCccH-HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCe--------------EEEEEEHHHHHHHHhhc----
Confidence 66666421 23678999999999999999 589999997653111 01189999999998764
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
...++.++= ++ +..|+.+++..+|++.|.+. +...+||||.+|+++|=|+..||-
T Consensus 105 ---~~~~v~~im---~~-~~~v~~~~~l~~a~~~m~~~--~~~~~pVvd~~g~lvGiit~~Dil 159 (172)
T 3lhh_A 105 ---ERLELVDLV---KN-CNFVPNSLSGMELLEHFRTT--GSQMVFVVDEYGDLKGLVTLQDMM 159 (172)
T ss_dssp ---CCCCGGGGC---BC-CEEEETTCCHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHH
T ss_pred ---CcccHHHHh---cC-CeEeCCCCCHHHHHHHHHHc--CCeEEEEEeCCCCEEEEeeHHHHH
Confidence 145666653 66 89999999999999999886 458899999999999999988874
No 51
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=98.47 E-value=3.5e-07 Score=72.53 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=81.3
Q ss_pred ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChh
Q 041297 178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLK 257 (379)
Q Consensus 178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe 257 (379)
.+++ +..++.+++..+|++.|.+. ..+.+||+| +|+++|-|+..+|... +.. + .+.
T Consensus 7 m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd-~~~~~G~it~~dl~~~-------~~~---~-----~~~----- 62 (125)
T 1pbj_A 7 MVTD-VDTIDITASLEDVLRNYVEN--AKGSSVVVK-EGVRVGIVTTWDVLEA-------IAE---G-----DDL----- 62 (125)
T ss_dssp CBCS-CCEEETTCBHHHHHHHHHHH--CCCEEEEEE-TTEEEEEEEHHHHHHH-------HHH---T-----CCT-----
T ss_pred cCCC-ceEECCCCcHHHHHHHHHHc--CCCEEEEEe-CCeeEEEEeHHHHHHH-------Hhc---C-----Ccc-----
Confidence 3456 89999999999999999875 458999999 9999999988877430 000 0 000
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHH
Q 041297 258 DLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIM 337 (379)
Q Consensus 258 ~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMa 337 (379)
...+ - .+. -...++++.+..+|.+++.
T Consensus 63 ----------------------------~~~~------v-~~~------------------m~~~~~~v~~~~~l~~~~~ 89 (125)
T 1pbj_A 63 ----------------------------AEVK------V-WEV------------------MERDLVTISPRATIKEAAE 89 (125)
T ss_dssp ----------------------------TTSB------H-HHH------------------CBCGGGEECTTSCHHHHHH
T ss_pred ----------------------------cccC------H-HHH------------------cCCCCeEECCCCCHHHHHH
Confidence 0000 0 000 1134789999999999999
Q ss_pred HHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 338 QALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 338 QAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
.+..|+.+++.|+|+ |.++|+|+..-
T Consensus 90 ~~~~~~~~~l~Vvd~-~~~~Gvit~~d 115 (125)
T 1pbj_A 90 KMVKNVVWRLLVEED-DEIIGVISATD 115 (125)
T ss_dssp HHHHHTCSEEEEEET-TEEEEEEEHHH
T ss_pred HHHhcCCcEEEEEEC-CEEEEEEEHHH
Confidence 999999999999999 99999998643
No 52
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=98.47 E-value=2.7e-07 Score=74.77 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=82.1
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+.|++++.||++.|. +|..+++|++...+- .=++|..|+++++..... .....++.++
T Consensus 21 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~~---~~~~~~v~~~ 82 (144)
T 2nyc_A 21 MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL---------------INVYEAYDVLGLIKGGIY---NDLSLSVGEA 82 (144)
T ss_dssp CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBE---------------EEEEEHHHHHHHHHTC-------CCSBHHHH
T ss_pred ceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcE---------------EEEEcHHHHHHHhccccc---ccCCccHHHH
Confidence 567999999999999998 689999888743211 119999999999876321 1224455553
Q ss_pred cccc----CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIID----DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~----~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
=.-+ .+ +..|+.++++.+|++.|.+. +...+||||.+|+++|-|+..||-
T Consensus 83 m~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~g~~~Giit~~dil 136 (144)
T 2nyc_A 83 LMRRSDDFEG-VYTCTKNDKLSTIMDNIRKA--RVHRFFVVDDVGRLVGVLTLSDIL 136 (144)
T ss_dssp HHHCC-------CEECTTSBHHHHHHHHHHH--TCSEEEEECTTSBEEEEEEHHHHH
T ss_pred HhcCccccCC-CeEECCCCcHHHHHHHHHHC--CCCEEEEECCCCCEEEEEEHHHHH
Confidence 1111 15 89999999999999999876 458999999999999999988763
No 53
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=98.46 E-value=3e-07 Score=77.27 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=89.3
Q ss_pred CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhh
Q 041297 169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMA 248 (379)
Q Consensus 169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a 248 (379)
..++.++= ++. + .|..++++.+|++.|.+. ..+.+||||.+|+++|-|+..+|... +
T Consensus 16 ~~~v~~im--~~~-~-~v~~~~~~~~a~~~m~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~-------~---------- 72 (159)
T 3fv6_A 16 KLQVKDFQ--SIP-V-VIHENVSVYDAICTMFLE--DVGTLFVVDRDAVLVGVLSRKDLLRA-------S---------- 72 (159)
T ss_dssp TCBGGGSC--BCC-C-EEETTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHH-------H----------
T ss_pred hCCHHHHc--CCC-E-EECCCCcHHHHHHHHHHC--CCCEEEEEcCCCcEEEEEeHHHHHHH-------h----------
Confidence 44566653 344 5 899999999999999885 55899999999999999987766430 0
Q ss_pred hhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecC
Q 041297 249 YMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYP 328 (379)
Q Consensus 249 ~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p 328 (379)
+.. ... ...+ . .+. +.....++++.+
T Consensus 73 -~~~-----------------------------~~~-~~~~------v-~~~----------------m~~~~~~~~v~~ 98 (159)
T 3fv6_A 73 -IGQ-----------------------------QEL-TSVP------V-HII----------------MTRMPNITVCRR 98 (159)
T ss_dssp -TSC-----------------------------SCT-TTCB------G-GGT----------------SEETTSCCCBCT
T ss_pred -hcc-----------------------------Ccc-cCcC------H-HHH----------------HcCCCCcEEECC
Confidence 000 000 0000 0 000 112235789999
Q ss_pred CCcHHHHHHHHHHcCCcEEEEeeCCC---CcccceEeehhhHHHHH
Q 041297 329 WSSLMAVIMQALARRDRLRSMAKAEN---PNFCPVRIQAKKQQLSR 371 (379)
Q Consensus 329 ~SSLvAVMaQAlaHRV~~vWVvd~e~---~l~~~v~~~~~~~~~~~ 371 (379)
..+|.+++..+..|+++++.|+|++| .++|+|+...--+.+.+
T Consensus 99 ~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~ 144 (159)
T 3fv6_A 99 EDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS 144 (159)
T ss_dssp TSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence 99999999999999999999999999 99999997654444433
No 54
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=98.45 E-value=5.6e-07 Score=73.09 Aligned_cols=104 Identities=11% Similarity=0.109 Sum_probs=81.7
Q ss_pred CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhh
Q 041297 180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKD 258 (379)
Q Consensus 180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~ 258 (379)
++ +..+..++++.+|++.|++. ..+.+||+|.+ |+++|-|+..||..... +..
T Consensus 15 ~~-~~~v~~~~~~~~a~~~m~~~--~~~~~pVvd~~~~~~~Givt~~dl~~~~~------------------~~~----- 68 (129)
T 3jtf_A 15 SR-MDLLDISQPLPQLLATIIET--AHSRFPVYEDDRDNIIGILLAKDLLRYML------------------EPA----- 68 (129)
T ss_dssp GG-CCCEETTSCHHHHHHHHHHS--CCSEEEEESSSTTCEEEEEEGGGGGGGGT------------------CTT-----
T ss_pred HH-eEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCCcEEEEEEHHHHHhHhc------------------cCC-----
Confidence 45 88999999999999999985 55899999996 89999999988865100 000
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHH
Q 041297 259 LVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQ 338 (379)
Q Consensus 259 l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQ 338 (379)
. . - ++. + ..++++.+..+|.+++..
T Consensus 69 ---------------------------~-~-------v-~~~----------------m---~~~~~v~~~~~l~~~~~~ 93 (129)
T 3jtf_A 69 ---------------------------L-D-------I-RSL----------------V---RPAVFIPEVKRLNVLLRE 93 (129)
T ss_dssp ---------------------------S-C-------G-GGG----------------C---BCCCEEETTCBHHHHHHH
T ss_pred ---------------------------c-C-------H-HHH----------------h---CCCeEeCCCCcHHHHHHH
Confidence 0 0 0 000 1 127899999999999999
Q ss_pred HHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 339 ALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 339 AlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
+..|+.+++-|+|++|.++|+|+..-
T Consensus 94 m~~~~~~~~pVvd~~g~~~Giit~~D 119 (129)
T 3jtf_A 94 FRASRNHLAIVIDEHGGISGLVTMED 119 (129)
T ss_dssp HHTSSCCEEEEECC-CCEEEEEEHHH
T ss_pred HHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence 99999999999999999999998654
No 55
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=98.45 E-value=3.4e-07 Score=76.95 Aligned_cols=116 Identities=12% Similarity=0.190 Sum_probs=90.0
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL 164 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l 164 (379)
|+++..+ ++ .+.|++++.||++.|. +|..+++|++...+- .=++|..|++++++..
T Consensus 19 v~~im~~---~~-~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~---- 75 (159)
T 3fv6_A 19 VKDFQSI---PV-VIHENVSVYDAICTMFLEDVGTLFVVDRDAVL---------------VGVLSRKDLLRASIGQ---- 75 (159)
T ss_dssp GGGSCBC---CC-EEETTSBHHHHHHHHHHHTCSEEEEECTTSCE---------------EEEEEHHHHHHHHTSC----
T ss_pred HHHHcCC---CE-EECCCCcHHHHHHHHHHCCCCEEEEEcCCCcE---------------EEEEeHHHHHHHhhcc----
Confidence 6666652 34 8999999999999999 689999998743211 1299999999988543
Q ss_pred CCCCCCcccccccccC--CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCC---cEEeeeCccccCC
Q 041297 165 NPTPNQPINSHNIIDD--AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEG---RLVGDISPFSLNS 229 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~--~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dG---kLIGeISa~~L~~ 229 (379)
......++.++ .++ + +..|..+++..+|++.|.+. +...+||||.+| +++|-|+..||-.
T Consensus 76 ~~~~~~~v~~~--m~~~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~~~~~vGiit~~dil~ 140 (159)
T 3fv6_A 76 QELTSVPVHII--MTRMPN-ITVCRREDYVMDIAKHLIEK--QIDALPVIKDTDKGFEVIGRVTKTNMTK 140 (159)
T ss_dssp SCTTTCBGGGT--SEETTS-CCCBCTTSBHHHHHHHHHHH--TCSEEEEEEECSSSEEEEEEEEHHHHHH
T ss_pred CcccCcCHHHH--HcCCCC-cEEECCCCCHHHHHHHHHHc--CCcEEEEEeCCCcceeEEEEEEHHHHHH
Confidence 12345566664 444 6 89999999999999999876 558999999998 9999998877643
No 56
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=98.45 E-value=8.8e-08 Score=77.26 Aligned_cols=116 Identities=9% Similarity=0.069 Sum_probs=84.4
Q ss_pred CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC-CCcHHHHHHHHhcchhhhh
Q 041297 169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN-SCDETVAAAIATLLAGDLM 247 (379)
Q Consensus 169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~-~CDet~a~A~atLSAgdf~ 247 (379)
..++.++ ..++ +..++.+++..+|+++|.+. ..+.+||+|.+|+++|-|+..+|. ..-
T Consensus 7 ~~~v~~i--m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~~~---------------- 65 (133)
T 1y5h_A 7 MTTARDI--MNAG-VTCVGEHETLTAAAQYMREH--DIGALPICGDDDRLHGMLTDRDIVIKGL---------------- 65 (133)
T ss_dssp -CCHHHH--SEET-CCCEETTSBHHHHHHHHHHH--TCSEEEEECGGGBEEEEEEHHHHHHTTG----------------
T ss_pred hcCHHHH--hcCC-ceEeCCCCCHHHHHHHHHHh--CCCeEEEECCCCeEEEEEeHHHHHHHHH----------------
Confidence 3444443 3456 88999999999999999875 458999999999999999988875 211
Q ss_pred hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297 248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY 327 (379)
Q Consensus 248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~ 327 (379)
..+..+ ...+ . .+. -...+++|.
T Consensus 66 ---~~~~~~-----------------------------~~~~------v-~~~------------------m~~~~~~v~ 88 (133)
T 1y5h_A 66 ---AAGLDP-----------------------------NTAT------A-GEL------------------ARDSIYYVD 88 (133)
T ss_dssp ---GGTCCT-----------------------------TTSB------H-HHH------------------HTTCCCCEE
T ss_pred ---hcCCCc-----------------------------cccC------H-HHH------------------hcCCCEEEC
Confidence 000000 0000 0 000 112468999
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
+..+|.+++.++..++.+++.|+|+ |.++|+|+..
T Consensus 89 ~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~ 123 (133)
T 1y5h_A 89 ANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEA 123 (133)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHH
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHH
Confidence 9999999999999999999999998 8999999864
No 57
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=98.44 E-value=1.1e-07 Score=77.17 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=79.9
Q ss_pred CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297 180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL 259 (379)
Q Consensus 180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l 259 (379)
++ +..++.+++..+|++.|.+. ..+.+||+| +|+++|-|+..+|... ....
T Consensus 17 ~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd-~~~~~Givt~~dl~~~------------------~~~~------- 67 (135)
T 2rc3_A 17 HT-VVAIGPDDSVFNAMQKMAAD--NIGALLVMK-DEKLVGILTERDFSRK------------------SYLL------- 67 (135)
T ss_dssp CC-CCEECTTSBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHHHH------------------GGGS-------
T ss_pred CC-cEEECCCCcHHHHHHHHHhc--CCCEEEEEE-CCEEEEEEehHHHHHH------------------HHHc-------
Confidence 56 89999999999999999876 458999999 9999999988877420 0000
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297 260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA 339 (379)
Q Consensus 260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA 339 (379)
|.. .. . .+ . .+. -...++++.+..+|.+++.++
T Consensus 68 -----------~~~-------~~---~-~~------v-~~~------------------m~~~~~~v~~~~~l~~~~~~m 100 (135)
T 2rc3_A 68 -----------DKP-------VK---D-TQ------V-KEI------------------MTRQVAYVDLNNTNEDCMALI 100 (135)
T ss_dssp -----------SSC-------GG---G-SB------G-GGT------------------SBCSCCCBCTTCBHHHHHHHH
T ss_pred -----------CCC-------cc---c-CC------H-HHh------------------ccCCCeEECCCCcHHHHHHHH
Confidence 000 00 0 00 0 000 113478999999999999999
Q ss_pred HHcCCcEEEEeeCCCCcccceEee
Q 041297 340 LARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 340 laHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
..|+.+++.|+| +|.++|+|+..
T Consensus 101 ~~~~~~~lpVvd-~g~~~Giit~~ 123 (135)
T 2rc3_A 101 TEMRVRHLPVLD-DGKVIGLLSIG 123 (135)
T ss_dssp HHHTCSEEEEEE-TTEEEEEEEHH
T ss_pred HHhCCCEEEEEe-CCEEEEEEEHH
Confidence 999999999999 89999999864
No 58
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.43 E-value=4.6e-07 Score=75.78 Aligned_cols=118 Identities=18% Similarity=0.241 Sum_probs=87.1
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccE-EEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh--
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQN-LVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI-- 161 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~r-llVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i-- 161 (379)
|+++.-+ -+..+.|++++.||++.|. ++.++ ++|++.. +-. =++|..|+++++...+
T Consensus 18 v~~im~~---~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~v---------------Givt~~dl~~~~~~~~~~ 78 (157)
T 1o50_A 18 VCKLISL---KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLV---------------GMIPVMHLLKVSGFHFFG 78 (157)
T ss_dssp HTTSSCC---CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEE---------------EEEEHHHHHHHHHHHHHC
T ss_pred HhhcccC---CCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEE---------------EEEEHHHHHHHHhhhHHh
Confidence 4455432 3678999999999999998 68888 8888764 321 2999999999876421
Q ss_pred -----ccc----CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 162 -----GLL----NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 162 -----g~l----~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
..| ......++.++ . .. +..|+.+++..+|++.|.+. ....+||||.+|+++|-||..||-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~v~~i--m-~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~~vGiit~~dll 148 (157)
T 1o50_A 79 FIPKEELIRSSMKRLIAKNASEI--M-LD-PVYVHMDTPLEEALKLMIDN--NIQEMPVVDEKGEIVGDLNSLEIL 148 (157)
T ss_dssp CCC-------CCCCCSSCBHHHH--C-BC-CCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHH
T ss_pred hhccHHHHHHHHHHHcCCcHHHH--c-CC-CeEECCCCCHHHHHHHHHHC--CCcEEEEEcCCCEEEEEEEHHHHH
Confidence 111 12234445443 2 23 78899999999999999886 458899999999999999988763
No 59
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=98.43 E-value=5.4e-07 Score=72.83 Aligned_cols=106 Identities=12% Similarity=0.053 Sum_probs=84.1
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc------ccc
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP------CFC 88 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~------VS~ 88 (379)
+-+++....|+.+|++.+.+++...+||.+.+ .++++|+|+.-|++-++.+ |++
T Consensus 14 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~--------------------~~~~vGivt~~dl~~~~~~~~~~~~v~~ 73 (127)
T 3nqr_A 14 QMITLKRNQTLDECLDVIIESAHSRFPVISED--------------------KDHIEGILMAKDLLPFMRSDAEAFSMDK 73 (127)
T ss_dssp GCCCEETTCCHHHHHHHHHHHCCSEEEEESSS--------------------TTCEEEEEEGGGGGGGGSTTCCCCCHHH
T ss_pred HeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC--------------------CCcEEEEEEHHHHHHHHhccCCCCCHHH
Confidence 34678889999999999999999999999732 1479999999999987752 777
Q ss_pred cccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHh
Q 041297 89 SFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN 159 (379)
Q Consensus 89 li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~ 159 (379)
+..+ ...+.|+++|.||++.|. +++++++|+++..+- .=++|++||+++|.+
T Consensus 74 ~m~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~---------------~Giit~~dll~~l~g 126 (127)
T 3nqr_A 74 VLRT----AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGV---------------SGLVTIEDILELIVG 126 (127)
T ss_dssp HCBC----CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCE---------------EEEEEHHHHHHHC--
T ss_pred HcCC----CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCE---------------EEEEEHHHHHHHHhC
Confidence 7632 357999999999999999 699999998643221 119999999999864
No 60
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=98.43 E-value=3e-07 Score=76.28 Aligned_cols=122 Identities=14% Similarity=0.121 Sum_probs=85.3
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGL 163 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~ 163 (379)
|+++..+ .+..+.|++++.||++.|. +|.+.++|+++. -.+ -.=++|..|+++++......
T Consensus 15 v~dim~~---~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~--------------~~Givt~~dl~~~~~~~~~~ 77 (164)
T 2pfi_A 15 VEHFMNH---SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQI--------------LVGIVQRAQLVQALQAEPPS 77 (164)
T ss_dssp HHHHCBC---CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCB--------------EEEEEEHHHHHHHHHC----
T ss_pred HHHHcCC---CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCE--------------EEEEEEHHHHHHHHHhhccc
Confidence 5555543 3566899999999999999 589999998751 111 11299999999998764333
Q ss_pred cCCCCCCccccccc----ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 164 LNPTPNQPINSHNI----IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 164 l~p~p~~SI~sLG~----I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
..+....++.++-. +++. +..|+.+++..+|++.|.+. +...+|||| +|+++|-|+..||-
T Consensus 78 ~~~~~~~~v~~~m~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~--~~~~lpVvd-~g~l~Giit~~dil 142 (164)
T 2pfi_A 78 RAPGHQQCLQDILARGCPTEPV-TLTLFSETTLHQAQNLFKLL--NLQSLFVTS-RGRAVGCVSWVEMK 142 (164)
T ss_dssp ---CCCCBHHHHHHTTCCCBCC-CCCEETTCBHHHHHHHHHHT--TCSEEEEEE-TTEEEEEEEHHHHH
T ss_pred cCCcccchhhhhhcccccccCC-ceEECCCCcHHHHHHHHHHh--CCCEEEEEE-CCEEEEEEEHHHHH
Confidence 22333344444321 1122 67899999999999999875 458999999 89999999988774
No 61
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=98.43 E-value=4.1e-07 Score=72.17 Aligned_cols=106 Identities=11% Similarity=0.075 Sum_probs=83.6
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+.|++++-||++.|. +|.+.++|++ ..+- .=++|..|+++++.+... ....++.++
T Consensus 11 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~---------------~G~it~~dl~~~~~~~~~----~~~~~v~~~ 70 (125)
T 1pbj_A 11 VDTIDITASLEDVLRNYVENAKGSSVVVK-EGVR---------------VGIVTTWDVLEAIAEGDD----LAEVKVWEV 70 (125)
T ss_dssp CCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEE---------------EEEEEHHHHHHHHHHTCC----TTTSBHHHH
T ss_pred ceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCee---------------EEEEeHHHHHHHHhcCCc----ccccCHHHH
Confidence 567899999999999999 5888988887 2111 129999999999876432 234455553
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+++ +..++.+++..+|++.|.+. +...+||+|. |+++|-||..||-
T Consensus 71 --m~~~-~~~v~~~~~l~~~~~~~~~~--~~~~l~Vvd~-~~~~Gvit~~dl~ 117 (125)
T 1pbj_A 71 --MERD-LVTISPRATIKEAAEKMVKN--VVWRLLVEED-DEIIGVISATDIL 117 (125)
T ss_dssp --CBCG-GGEECTTSCHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHH
T ss_pred --cCCC-CeEECCCCCHHHHHHHHHhc--CCcEEEEEEC-CEEEEEEEHHHHH
Confidence 3456 89999999999999999886 4589999998 9999999988763
No 62
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=98.43 E-value=3e-07 Score=75.16 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=83.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|++++-||++.|. +|..+++|++....+ . .=++|..|+++++.+.- +....++.++
T Consensus 14 ~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~--------l------vGivt~~dl~~~~~~~~----~~~~~~v~~~ 75 (130)
T 3hf7_A 14 IVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDD--------A------ISMLRVREAYRLMTEKK----EFTKEIMLRA 75 (130)
T ss_dssp CCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGG--------E------EEEEEHHHHHHHHTSSS----CCCHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCc--------E------EEEEEHHHHHHHHhccC----ccchhhHHHh
Confidence 678999999999999999 688999997542111 0 11899999999986532 1223345554
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
. ++ +..|..+++..+|++.|.+. +...+||||.+|+++|=|+..||-
T Consensus 76 --m-~~-~~~v~~~~~l~~~~~~m~~~--~~~~~~Vvd~~g~lvGiit~~Dil 122 (130)
T 3hf7_A 76 --A-DE-IYFVPEGTPLSTQLVKFQRN--KKKVGLVVDEYGDIQGLVTVEDIL 122 (130)
T ss_dssp --S-BC-CCEEETTCBHHHHHHHHHHH--CCCEEEEECTTSCEEEEEEHHHHH
T ss_pred --c-cC-CeEeCCCCcHHHHHHHHHhc--CCeEEEEEcCCCCEEEEeeHHHHH
Confidence 2 56 78999999999999999885 447899999999999999988763
No 63
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=98.42 E-value=3.2e-07 Score=76.00 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=86.7
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-c
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-L 163 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-~ 163 (379)
|+++..+. ..+..+.|++++.||++.|. +|+++++|++...+- .=++|..|+++++...-. .
T Consensus 13 v~~im~~~-~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~---------------~Givt~~dl~~~~~~~~~~~ 76 (157)
T 2emq_A 13 VKPFLIPA-DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKL---------------HGLISMTMMMDAILGLERIE 76 (157)
T ss_dssp STTTCEEG-GGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCE---------------EEEEEHHHHHHHSBCSSSBC
T ss_pred HHhhccCC-ccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCE---------------EEEeeHHHHHHHHhcccccc
Confidence 45554321 13567999999999999999 689999998742211 129999999998764210 0
Q ss_pred cCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 164 LNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 164 l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+......++.++ .+++ +..|+.+++..+|++.|.+. + . +||||.+|+++|-||..||-
T Consensus 77 ~~~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~m~~~--~-~-l~Vvd~~g~~~Giit~~dil 134 (157)
T 2emq_A 77 FERLETMKVEEV--MNRN-IPRLRLDDSLMKAVGLIVNH--P-F-VCVENDDGYFAGIFTRREVL 134 (157)
T ss_dssp GGGGGTCBGGGT--CBCC-CCEEETTSBHHHHHHHHHHS--S-E-EEEECSSSSEEEEEEHHHHH
T ss_pred hHHhcCCcHHHH--hCCC-CceecCCCcHHHHHHHHhhC--C-E-EEEEcCCCeEEEEEEHHHHH
Confidence 011234555553 4567 89999999999999999875 2 2 99999999999999887764
No 64
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=98.40 E-value=4.2e-07 Score=75.35 Aligned_cols=127 Identities=9% Similarity=0.054 Sum_probs=85.7
Q ss_pred CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC--CCcEEeeeCccccCCCcHHHHHHHHhcchhhh
Q 041297 169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE--EGRLVGDISPFSLNSCDETVAAAIATLLAGDL 246 (379)
Q Consensus 169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~--dGkLIGeISa~~L~~CDet~a~A~atLSAgdf 246 (379)
..++.++ .+++ +..++.+++..+|+++|.+. ..+.+||||. +|+++|-|+..+|.... .. + .
T Consensus 12 ~~~v~di--m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~pVvd~~~~~~~~Givt~~dl~~~~-------~~---~-~ 75 (164)
T 2pfi_A 12 HVRVEHF--MNHS-ITTLAKDTPLEEVVKVVTST--DVTEYPLVESTESQILVGIVQRAQLVQAL-------QA---E-P 75 (164)
T ss_dssp SCBHHHH--CBCC-CCCEETTCBHHHHHHHHHTC--CCSEEEEESCTTTCBEEEEEEHHHHHHHH-------HC------
T ss_pred CCCHHHH--cCCC-CeEECCCCcHHHHHHHHHhC--CCCceeEEecCCCCEEEEEEEHHHHHHHH-------Hh---h-c
Confidence 4455543 4566 88999999999999999875 4589999997 78999999988874311 00 0 0
Q ss_pred hhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceee
Q 041297 247 MAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVC 326 (379)
Q Consensus 247 ~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC 326 (379)
-.+... .+ ....+.|... . .....+++|
T Consensus 76 ~~~~~~---~~---------------~~v~~~m~~~-----~-----------------------------~~~~~~~~v 103 (164)
T 2pfi_A 76 PSRAPG---HQ---------------QCLQDILARG-----C-----------------------------PTEPVTLTL 103 (164)
T ss_dssp -----C---CC---------------CBHHHHHHTT-----C-----------------------------CCBCCCCCE
T ss_pred cccCCc---cc---------------chhhhhhccc-----c-----------------------------cccCCceEE
Confidence 000000 00 0000011000 0 011126899
Q ss_pred cCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 327 YPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 327 ~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
.+..+|.+++..+..|+++++.|+| +|.++|+|+..-
T Consensus 104 ~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~d 140 (164)
T 2pfi_A 104 FSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVE 140 (164)
T ss_dssp ETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHH
T ss_pred CCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHH
Confidence 9999999999999999999999999 899999999654
No 65
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=98.40 E-value=5.3e-07 Score=77.67 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=89.8
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL 164 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l 164 (379)
|+++..+ .+..+.|+++|.||++.|. ++.++++|++...+- .=++|..|+++++...-..
T Consensus 11 v~~im~~---~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~---------------vGivt~~dl~~~~~~~~~~- 71 (184)
T 1pvm_A 11 VEKIMNS---NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGND---------------VGLLSERSIIKRFIPRNKK- 71 (184)
T ss_dssp GGGTSBT---TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCE---------------EEEEEHHHHHHHTGGGCCC-
T ss_pred HHHhcCC---CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcE---------------EEEEeHHHHHHHHhhcccC-
Confidence 5555542 3667999999999999999 699999998642111 1299999999988753111
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
....++.++ .+++ +..|..+++..+|++.|.+. +...+||||.+|+++|-||..||-.
T Consensus 72 --~~~~~v~~i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~~~Givt~~dll~ 129 (184)
T 1pvm_A 72 --PDEVPIRLV--MRKP-IPKVKSDYDVKDVAAYLSEN--GLERCAVVDDPGRVVGIVTLTDLSR 129 (184)
T ss_dssp --GGGSBGGGT--SBSS-CCEEETTCBHHHHHHHHHHH--TCSEEEEECTTCCEEEEEEHHHHTT
T ss_pred --cccCCHHHH--hCCC-CcEECCCCCHHHHHHHHHHc--CCcEEEEEcCCCeEEEEEEHHHHHH
Confidence 123445543 3466 89999999999999999886 4588999999999999999999865
No 66
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=98.40 E-value=2.8e-07 Score=76.72 Aligned_cols=108 Identities=15% Similarity=0.253 Sum_probs=85.0
Q ss_pred ceEEeCCCCchhHHHHHHh-cCccEEEEecCC-cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297 96 IVRHLKPSASLLEAVDLLL-GGVQNLVILPAG-IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN 173 (379)
Q Consensus 96 ll~~V~P~tsLLdAie~m~-~G~~rllVi~s~-~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~ 173 (379)
-+..+.|++++.||++.|. ++.+.++|.+++ ... ++|..|+++++...-. .....++.
T Consensus 22 ~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~G-----------------ivt~~dl~~~~~~~~~---~~~~~~v~ 81 (157)
T 4fry_A 22 TIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAG-----------------IVTERDYARKVVLQER---SSKATRVE 81 (157)
T ss_dssp CCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEE-----------------EEEHHHHHHHSGGGTC---CSSSCBHH
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEE-----------------EEEHHHHHHHHHhccC---CccccCHH
Confidence 4778999999999999998 688888885421 122 9999999999876432 22355566
Q ss_pred ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
++ .+++ +..|+.+++..+|++.|.+. +...+|||| +|+++|-|+..||-.
T Consensus 82 ~~--m~~~-~~~v~~~~~l~~~~~~m~~~--~~~~lpVvd-~g~~~Giit~~dil~ 131 (157)
T 4fry_A 82 EI--MTAK-VRYVEPSQSTDECMALMTEH--RMRHLPVLD-GGKLIGLISIGDLVK 131 (157)
T ss_dssp HH--SBSS-CCCBCTTSBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHHH
T ss_pred HH--cCCC-CcEECCCCcHHHHHHHHHHc--CCCEEEEEE-CCEEEEEEEHHHHHH
Confidence 53 4566 88999999999999999886 458999999 899999998877643
No 67
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=98.39 E-value=6e-07 Score=73.74 Aligned_cols=108 Identities=11% Similarity=0.110 Sum_probs=83.6
Q ss_pred CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC-CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhh
Q 041297 180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE-GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKD 258 (379)
Q Consensus 180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d-GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~ 258 (379)
++ +..++.++++.+|+++|++. ..+.+||++.+ |+++|-|+..||...-. ...
T Consensus 13 ~~-~~~v~~~~~v~~a~~~m~~~--~~~~~pVvd~~~~~~vGivt~~dl~~~~~------------------~~~----- 66 (136)
T 3lfr_A 13 SQ-MISIKATQTPREFLPAVIDA--AHSRYPVIGESHDDVLGVLLAKDLLPLIL------------------KAD----- 66 (136)
T ss_dssp GG-CCCEETTCCHHHHHHHHHHH--CCSEEEEESSSTTCEEEEEEGGGGGGGGG------------------SSS-----
T ss_pred HH-EEEEcCCCCHHHHHHHHHhC--CCCEEEEEcCCCCcEEEEEEHHHHHHHHH------------------hcc-----
Confidence 45 88999999999999999986 55899999998 89999999988865110 000
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHH
Q 041297 259 LVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQ 338 (379)
Q Consensus 259 l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQ 338 (379)
.. . .+ - .+. + ++++++.+..+|.+++..
T Consensus 67 ----------------------~~---~-~~------v-~~~----------------m---~~~~~v~~~~~l~~~~~~ 94 (136)
T 3lfr_A 67 ----------------------GD---S-DD------V-KKL----------------L---RPATFVPESKRLNVLLRE 94 (136)
T ss_dssp ----------------------GG---G-CC------G-GGT----------------C---BCCCEEETTCBHHHHHHH
T ss_pred ----------------------CC---C-cC------H-HHH----------------c---CCCeEECCCCcHHHHHHH
Confidence 00 0 00 0 000 1 127899999999999999
Q ss_pred HHHcCCcEEEEeeCCCCcccceEeehh
Q 041297 339 ALARRDRLRSMAKAENPNFCPVRIQAK 365 (379)
Q Consensus 339 AlaHRV~~vWVvd~e~~l~~~v~~~~~ 365 (379)
+..|+.+++=|+|++|.++|+|+..--
T Consensus 95 m~~~~~~~~~Vvd~~g~lvGiit~~Di 121 (136)
T 3lfr_A 95 FRANHNHMAIVIDEYGGVAGLVTIEDV 121 (136)
T ss_dssp HHHHTCCEEEEECTTSCEEEEEEHHHH
T ss_pred HHhcCCeEEEEEeCCCCEEEEEEHHHH
Confidence 999999999999999999999987543
No 68
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=98.39 E-value=7.4e-07 Score=72.21 Aligned_cols=115 Identities=21% Similarity=0.318 Sum_probs=85.5
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL 164 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l 164 (379)
|+++..+ .+..+.|++++-||++.|. +|...++|++...+- .=++|..|+++.++..-
T Consensus 9 v~~im~~---~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~--- 67 (138)
T 2yzi_A 9 IKVYMTK---KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNV---------------VGFFTKSDIIRRVIVPG--- 67 (138)
T ss_dssp GGGTCBC---CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCE---------------EEEEEHHHHHHHTTTTC---
T ss_pred HHHHhcC---CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcE---------------EEEEeHHHHHHHHHhcC---
Confidence 4454432 3567999999999999998 689999998742211 11999999986543321
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.....++.++ .+++ +..++.+++..+|++.|.+. +...+ |||.+|+++|-|+..||-
T Consensus 68 -~~~~~~v~~~--m~~~-~~~v~~~~~l~~~~~~m~~~--~~~~l-Vvd~~g~~~Giit~~dil 124 (138)
T 2yzi_A 68 -LPYDIPVERI--MTRN-LITANVNTPLGEVLRKMAEH--RIKHI-LIEEEGKIVGIFTLSDLL 124 (138)
T ss_dssp -CCTTSBGGGT--CBCS-CCEEETTSBHHHHHHHHHHH--TCSEE-EEEETTEEEEEEEHHHHH
T ss_pred -CcccCCHHHH--hhCC-CeEECCCCcHHHHHHHHHhc--CCCEE-EECCCCCEEEEEEHHHHH
Confidence 1235566654 4567 89999999999999999876 44778 999999999999988764
No 69
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=98.38 E-value=3e-07 Score=76.84 Aligned_cols=120 Identities=13% Similarity=0.152 Sum_probs=87.2
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-c
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG-L 163 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig-~ 163 (379)
|+++..+. .-+..+.|++++.||++.|. +|...++|++...+- .=++|..|+++++.+.-. .
T Consensus 16 v~~im~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~l---------------vGivt~~dl~~~~~~~~~~~ 79 (159)
T 1yav_A 16 VGQFMIEA-DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRL---------------HGLIGTNMIMNSIFGLERIE 79 (159)
T ss_dssp HHHHSEEG-GGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBE---------------EEEEEHHHHHHHHBCSSSBC
T ss_pred HHHHhCCc-cceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCE---------------EEEeEHHHHHHHhhhhcccc
Confidence 55555421 13567899999999999998 699999998753221 129999999999865311 1
Q ss_pred cCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 164 LNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 164 l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+......++.++ .+++ +..|..+++..+|++.|.+. .- +||||.+|+++|-|+..||-
T Consensus 80 ~~~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~m~~~---~~-lpVvd~~g~~vGiit~~dil 137 (159)
T 1yav_A 80 FEKLDQITVEEV--MLTD-IPRLHINDPIMKGFGMVINN---GF-VCVENDEQVFEGIFTRRVVL 137 (159)
T ss_dssp GGGTTTSBHHHH--SBCS-CCEEETTSBHHHHHHHTTTC---SE-EEEECTTCBEEEEEEHHHHH
T ss_pred hhhhccCCHHHh--cCCC-CceEcCCCCHHHHHHHHHhC---CE-EEEEeCCCeEEEEEEHHHHH
Confidence 111334556553 4567 89999999999999999764 22 99999999999999887764
No 70
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=98.37 E-value=4.9e-07 Score=74.98 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=90.1
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL 164 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l 164 (379)
|+++..+. ..+..+.|++++.||++.|. +|...++|++...+- .=++|..|+++++....
T Consensus 30 v~dim~~~-~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~--- 90 (149)
T 3k2v_A 30 VNDIMHTG-DEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNI---------------IGIFTDGDLRRVFDTGV--- 90 (149)
T ss_dssp GGGTSBCG-GGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBE---------------EEEEEHHHHHHHHCSSS---
T ss_pred HHHHhcCC-CCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcE---------------EEEecHHHHHHHHhcCC---
Confidence 67776531 13678999999999999999 689999998743221 11999999999886532
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.....++.++ .+++ +..|+.+++..+|++.|.+. +...+||||.+ +++|-|+..||-
T Consensus 91 -~~~~~~v~~~--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~-~~~Giit~~dil 147 (149)
T 3k2v_A 91 -DMRDASIADV--MTRG-GIRIRPGTLAVDALNLMQSR--HITCVLVADGD-HLLGVVHMHDLL 147 (149)
T ss_dssp -CCTTCBHHHH--SEES-CCEECTTCBHHHHHHHHHHH--TCSEEEEEETT-EEEEEEEHHHHT
T ss_pred -CcccCcHHHH--cCCC-CeEECCCCCHHHHHHHHHHc--CCCEEEEecCC-EEEEEEEHHHhh
Confidence 2345566654 4566 88999999999999999886 45889999977 999999988864
No 71
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=98.37 E-value=9.5e-07 Score=74.81 Aligned_cols=122 Identities=11% Similarity=0.165 Sum_probs=88.7
Q ss_pred ccccccCC-CCceEEe--CCCCchhHHHHHHh-cCccEEEEec--CCcccCCCCCCcccccCCcceEEeeHHHHHHHHHh
Q 041297 86 CFCSFAKD-SGIVRHL--KPSASLLEAVDLLL-GGVQNLVILP--AGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN 159 (379)
Q Consensus 86 VS~li~~~-~gll~~V--~P~tsLLdAie~m~-~G~~rllVi~--s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~ 159 (379)
|+++.-+. +..+..| .|++++.||++.|. +|.++++|++ ...+- .=++|..|+++++..
T Consensus 13 v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~l---------------vGiit~~dl~~~~~~ 77 (185)
T 2j9l_A 13 AMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRL---------------VGFVLRRDLIISIEN 77 (185)
T ss_dssp HHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBE---------------EEEEEHHHHHHHHHH
T ss_pred HHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeE---------------EEEEEHHHHHHHHHh
Confidence 55665432 1225567 99999999999999 6899998883 32111 128999999999876
Q ss_pred hhcc-----------c---------CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEE
Q 041297 160 FIGL-----------L---------NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLV 219 (379)
Q Consensus 160 ~ig~-----------l---------~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLI 219 (379)
.-.. | ......++.++ .+++ +..|+.+++..+|++.|.+. +...+|||| +|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~l~Vvd-~g~~v 151 (185)
T 2j9l_A 78 ARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNI--LDLS-PFTVTDLTPMEIVVDIFRKL--GLRQCLVTH-NGRLL 151 (185)
T ss_dssp HHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGG--EESS-CCEEETTSBHHHHHHHHHHH--TCSEEEEEE-TTEEE
T ss_pred hcccCCCccccceeecccCCcccccccccCccHHHh--hCcC-CeEeCCCCCHHHHHHHHHhC--CCcEEEEEE-CCEEE
Confidence 4211 0 11234455543 5567 99999999999999999875 458899999 99999
Q ss_pred eeeCccccC
Q 041297 220 GDISPFSLN 228 (379)
Q Consensus 220 GeISa~~L~ 228 (379)
|-|+..||-
T Consensus 152 Giit~~dll 160 (185)
T 2j9l_A 152 GIITKKDVL 160 (185)
T ss_dssp EEEEHHHHH
T ss_pred EEEEHHHHH
Confidence 999887764
No 72
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=98.36 E-value=8e-07 Score=72.98 Aligned_cols=108 Identities=11% Similarity=0.043 Sum_probs=84.7
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-------cc
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-------CF 87 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-------VS 87 (379)
+-+++....|+.+|++.+.+++...+||-+.+ .++++|+|+.-|++-++.+ |+
T Consensus 14 ~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~--------------------~~~~vGivt~~dl~~~~~~~~~~~~~v~ 73 (136)
T 3lfr_A 14 QMISIKATQTPREFLPAVIDAAHSRYPVIGES--------------------HDDVLGVLLAKDLLPLILKADGDSDDVK 73 (136)
T ss_dssp GCCCEETTCCHHHHHHHHHHHCCSEEEEESSS--------------------TTCEEEEEEGGGGGGGGGSSSGGGCCGG
T ss_pred HEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC--------------------CCcEEEEEEHHHHHHHHHhccCCCcCHH
Confidence 34677889999999999999999999998732 1479999999999987762 67
Q ss_pred ccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297 88 CSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI 161 (379)
Q Consensus 88 ~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i 161 (379)
++.. . +..+.|+++|.||++.|. +|+++++|++...+-. =++|+.||++.|.+-+
T Consensus 74 ~~m~---~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lv---------------Giit~~Dil~~l~~~~ 129 (136)
T 3lfr_A 74 KLLR---P-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVA---------------GLVTIEDVLEQIVGDI 129 (136)
T ss_dssp GTCB---C-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEE---------------EEEEHHHHHTTC----
T ss_pred HHcC---C-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEE---------------EEEEHHHHHHHHhCCC
Confidence 7663 2 678999999999999999 6999999986432211 1999999999988754
No 73
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=98.35 E-value=5e-07 Score=73.15 Aligned_cols=107 Identities=18% Similarity=0.316 Sum_probs=82.3
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..+.|++++.||++.|. +|...++|+++ .+- .=++|..|+++++...-. .....++.++
T Consensus 19 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~---------------~Givt~~dl~~~~~~~~~---~~~~~~v~~~ 79 (135)
T 2rc3_A 19 VVAIGPDDSVFNAMQKMAADNIGALLVMKD-EKL---------------VGILTERDFSRKSYLLDK---PVKDTQVKEI 79 (135)
T ss_dssp CCEECTTSBHHHHHHHHHHHTCSEEEEEET-TEE---------------EEEEEHHHHHHHGGGSSS---CGGGSBGGGT
T ss_pred cEEECCCCcHHHHHHHHHhcCCCEEEEEEC-CEE---------------EEEEehHHHHHHHHHcCC---CcccCCHHHh
Confidence 567999999999999998 68889988862 111 129999999986654311 1234455553
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.+++ +..|+.+++..+|++.|.+. ....+|||| +|+++|-|+..||-
T Consensus 80 --m~~~-~~~v~~~~~l~~~~~~m~~~--~~~~lpVvd-~g~~~Giit~~dll 126 (135)
T 2rc3_A 80 --MTRQ-VAYVDLNNTNEDCMALITEM--RVRHLPVLD-DGKVIGLLSIGDLV 126 (135)
T ss_dssp --SBCS-CCCBCTTCBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHH
T ss_pred --ccCC-CeEECCCCcHHHHHHHHHHh--CCCEEEEEe-CCEEEEEEEHHHHH
Confidence 4466 88999999999999999876 448899999 89999999988764
No 74
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=98.34 E-value=1.2e-06 Score=76.00 Aligned_cols=114 Identities=11% Similarity=0.029 Sum_probs=87.9
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL 164 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l 164 (379)
|+++.-+. .-+..|+|++++-||++.|. +|..+++|++....+ -.=++|..|+++++...
T Consensus 38 v~diM~~~-~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~--------------lvGivt~~Dl~~~~~~~---- 98 (173)
T 3ocm_A 38 IRSIMTPR-TDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDE--------------VVGIGRAKDLVADLITE---- 98 (173)
T ss_dssp STTTSEEG-GGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTS--------------EEEEEEHHHHHHHHHHH----
T ss_pred HHHhCCcH-HHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCC--------------EEEEEEHHHHHHHHhcC----
Confidence 66666321 23677999999999999999 689999997643111 01199999999998764
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
...++. +.++ +..|..++++.+|++.|.+. +...+||||.+|+++|=|+..|+-
T Consensus 99 ---~~~~v~----~~~~-~~~v~~~~~l~~al~~m~~~--~~~~~~Vvde~g~lvGiIT~~Dil 152 (173)
T 3ocm_A 99 ---GRVRRN----RLRD-PIIVHESIGILRLMDTLKRS--RGQLVLVADEFGAIEGLVTPIDVF 152 (173)
T ss_dssp ---SSCCGG----GSBC-CCEECGGGCHHHHHHHHHHS--TTCCEEEECTTCCEEEEECHHHHH
T ss_pred ---CcchhH----hcCC-CeEECCCCcHHHHHHHHHHc--CCeEEEEEeCCCCEEEEEeHHHHH
Confidence 133444 4566 88999999999999999885 447899999999999999988764
No 75
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=98.31 E-value=9.5e-07 Score=73.09 Aligned_cols=129 Identities=11% Similarity=0.041 Sum_probs=87.4
Q ss_pred CCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhh
Q 041297 168 PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLM 247 (379)
Q Consensus 168 p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~ 247 (379)
...++.++-.-.++ +..|+.+++..+|++.|.+. ..+.+||||.+|+++|-|+..+|...
T Consensus 9 ~~~~v~~im~~~~~-~~~v~~~~~~~~a~~~m~~~--~~~~~pVvd~~~~~~Givt~~dl~~~----------------- 68 (157)
T 2emq_A 9 MQMTVKPFLIPADK-VAHVQPGNYLDHALLVLTKT--GYSAIPVLDTSYKLHGLISMTMMMDA----------------- 68 (157)
T ss_dssp -CCBSTTTCEEGGG-SCCBCTTSBHHHHHHHHHHS--SSSEEEEECTTCCEEEEEEHHHHHHH-----------------
T ss_pred hhCcHHhhccCCcc-ceEECCCCcHHHHHHHHHHC--CceEEEEEcCCCCEEEEeeHHHHHHH-----------------
Confidence 34556654321126 88999999999999999886 45899999999999999988777431
Q ss_pred hhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeec
Q 041297 248 AYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCY 327 (379)
Q Consensus 248 a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~ 327 (379)
+..+.. +. .. .. ... . .+.--...++++.
T Consensus 69 --~~~~~~-----------~~---~~----~~------~~~-----------------~--------v~~~m~~~~~~v~ 97 (157)
T 2emq_A 69 --ILGLER-----------IE---FE----RL------ETM-----------------K--------VEEVMNRNIPRLR 97 (157)
T ss_dssp --SBCSSS-----------BC---GG----GG------GTC-----------------B--------GGGTCBCCCCEEE
T ss_pred --Hhcccc-----------cc---hH----Hh------cCC-----------------c--------HHHHhCCCCceec
Confidence 000000 00 00 00 000 0 0000123578999
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehhhHHH
Q 041297 328 PWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAKKQQL 369 (379)
Q Consensus 328 p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~~~~~ 369 (379)
+..+|.+++..+..|++ +.|+|++|.++|+|+...--..+
T Consensus 98 ~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~ 137 (157)
T 2emq_A 98 LDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQL 137 (157)
T ss_dssp TTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHH
T ss_pred CCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHH
Confidence 99999999999999998 99999999999999975433333
No 76
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=98.31 E-value=1.5e-06 Score=77.86 Aligned_cols=117 Identities=13% Similarity=0.131 Sum_probs=89.7
Q ss_pred CCCCcccccccccCCcEEEEecCCchhcHHHHHHhccc-cCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhh
Q 041297 167 TPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHI-KQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGD 245 (379)
Q Consensus 167 ~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~-~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgd 245 (379)
.+..|+.++ .+++ +.+|+.+.++-+|++.|++... ....++|||.+|+++|-|+..+|...+. ...+.|
T Consensus 51 ~~~~~v~~i--M~~~-~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~~-------~~~v~~ 120 (205)
T 3kxr_A 51 YSENEIGRY--TDHQ-MLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHEP-------HEPLIS 120 (205)
T ss_dssp SCTTCGGGG--CBCC-CCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSCT-------TSBGGG
T ss_pred CCcchHHhh--ccCc-eEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCCC-------cchHHH
Confidence 345556543 4677 9999999999999999998211 4578999999999999999888754210 000000
Q ss_pred hhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCcccee
Q 041297 246 LMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIV 325 (379)
Q Consensus 246 f~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vt 325 (379)
+ =...+++
T Consensus 121 i------------------------------------------------------------------------m~~~~~~ 128 (205)
T 3kxr_A 121 L------------------------------------------------------------------------LSEDSRA 128 (205)
T ss_dssp G------------------------------------------------------------------------CCSSCCC
T ss_pred H------------------------------------------------------------------------hcCCCeE
Confidence 0 1134689
Q ss_pred ecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297 326 CYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK 365 (379)
Q Consensus 326 C~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~ 365 (379)
+++..++.+++..+..|+.+++=|||++|.++|+|++.--
T Consensus 129 v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Di 168 (205)
T 3kxr_A 129 LTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAA 168 (205)
T ss_dssp EETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHH
T ss_pred ECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 9999999999999999999999999999999999997643
No 77
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=98.31 E-value=3.2e-07 Score=76.32 Aligned_cols=108 Identities=15% Similarity=0.095 Sum_probs=79.4
Q ss_pred CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297 180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL 259 (379)
Q Consensus 180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l 259 (379)
++ +..|..++++.+|+++|.+. ..+.+||+| +|+++|-|+..+|... +..
T Consensus 21 ~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~V~~-~~~~~Givt~~dl~~~-------------------~~~------- 70 (157)
T 4fry_A 21 RT-IYTVTKNDFVYDAIKLMAEK--GIGALLVVD-GDDIAGIVTERDYARK-------------------VVL------- 70 (157)
T ss_dssp CC-CCEEETTSBHHHHHHHHHHH--TCSEEEEES-SSSEEEEEEHHHHHHH-------------------SGG-------
T ss_pred CC-CeEECCCCcHHHHHHHHHHc--CCCEEEEee-CCEEEEEEEHHHHHHH-------------------HHh-------
Confidence 55 89999999999999999876 458899965 8999999988777431 000
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297 260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA 339 (379)
Q Consensus 260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA 339 (379)
++.. .. . . .. .+. -..+++++.+..+|.+++..+
T Consensus 71 ----------~~~~-------~~---~-~------~v-~~~------------------m~~~~~~v~~~~~l~~~~~~m 104 (157)
T 4fry_A 71 ----------QERS-------SK---A-T------RV-EEI------------------MTAKVRYVEPSQSTDECMALM 104 (157)
T ss_dssp ----------GTCC-------SS---S-C------BH-HHH------------------SBSSCCCBCTTSBHHHHHHHH
T ss_pred ----------ccCC-------cc---c-c------CH-HHH------------------cCCCCcEECCCCcHHHHHHHH
Confidence 0000 00 0 0 00 000 113478999999999999999
Q ss_pred HHcCCcEEEEeeCCCCcccceEeeh
Q 041297 340 LARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 340 laHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
..|+++++.|+| +|.++|+|+...
T Consensus 105 ~~~~~~~lpVvd-~g~~~Giit~~d 128 (157)
T 4fry_A 105 TEHRMRHLPVLD-GGKLIGLISIGD 128 (157)
T ss_dssp HHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred HHcCCCEEEEEE-CCEEEEEEEHHH
Confidence 999999999999 899999998654
No 78
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=98.30 E-value=1.1e-06 Score=75.03 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=83.7
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------- 85 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------- 85 (379)
|=+++....|+++|+..|.+++.+.+||.+. .++++|+|+.-||+-++..
T Consensus 26 ~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~---------------------~~~lvGiit~~Di~~~~~~~~~~~~~~~ 84 (156)
T 3k6e_A 26 NLAVLIDTHNADHATLLLSQMTYTRVPVVTD---------------------EKQFVGTIGLRDIMAYQMEHDLSQEIMA 84 (156)
T ss_dssp SSCCEETTSBHHHHHHHHTTSSSSEEEEECC----------------------CBEEEEEEHHHHHHHHHHHTCCHHHHT
T ss_pred HeEEECCcCCHHHHHHHHHHcCCcEEEEEcC---------------------CCcEEEEEEecchhhhhhhccccccccc
Confidence 4456788899999999999999999999973 2469999999999877653
Q ss_pred ---ccccccCCCCceEEeCCCCchhHHHHHHhcCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc
Q 041297 86 ---CFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG 162 (379)
Q Consensus 86 ---VS~li~~~~gll~~V~P~tsLLdAie~m~~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig 162 (379)
|+++.. -.+..+.|++++.+|++.|.+. +.++|++...+-. . ++|++||++.+.+-+.
T Consensus 85 ~~~v~~im~---~~~~~v~~~~~l~~~~~~m~~~-~~lpVVd~~g~l~---------G------iiT~~Dil~~~~~~~~ 145 (156)
T 3k6e_A 85 DTDIVHMTK---TDVAVVSPDFTITEVLHKLVDE-SFLPVVDAEGIFQ---------G------IITRKSILKAVNALLH 145 (156)
T ss_dssp TSBGGGTCB---CSCCCBCTTCCHHHHHHHTTTS-SEEEEECTTSBEE---------E------EEEHHHHHHHHHHHSC
T ss_pred ccCHHHhhc---CCceecccccHHHHHHHHHHHc-CCeEEEecCCEEE---------E------EEEHHHHHHHHHHHhc
Confidence 455543 2367899999999999999963 3366675432211 1 9999999999987665
Q ss_pred cc
Q 041297 163 LL 164 (379)
Q Consensus 163 ~l 164 (379)
.+
T Consensus 146 ~~ 147 (156)
T 3k6e_A 146 DF 147 (156)
T ss_dssp C-
T ss_pred cc
Confidence 54
No 79
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=98.29 E-value=2.3e-06 Score=70.39 Aligned_cols=109 Identities=14% Similarity=0.050 Sum_probs=84.2
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------- 85 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------- 85 (379)
+-+++....|+.+|++.+.+++...+||.+.+ ++++|+|+.-||+-++..
T Consensus 26 ~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~---------------------~~~~Givt~~dl~~~~~~~~~~~~~~~ 84 (150)
T 3lqn_A 26 KVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM---------------------YKLHGLISTAMILDGILGLERIEFERL 84 (150)
T ss_dssp GSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT---------------------CBEEEEEEHHHHHHHTBCSSSBCGGGG
T ss_pred ceEEECCCCcHHHHHHHHHHcCCcEEEEECCC---------------------CCEEEEEEHHHHHHHHHhhcccchhHH
Confidence 45678889999999999999999999999732 469999999999877641
Q ss_pred ----ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhh
Q 041297 86 ----CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNF 160 (379)
Q Consensus 86 ----VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ 160 (379)
|+++..+ .+..+.|+++|.||++.|. +++ ++|++...+- .=++|+.||+++|.+.
T Consensus 85 ~~~~v~~~m~~---~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~---------------~Giit~~dil~~l~~~ 144 (150)
T 3lqn_A 85 EEMKVEQVMKQ---DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYF---------------EGILTRRAILKLLNKK 144 (150)
T ss_dssp GGCBGGGTCBS---SCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBE---------------EEEEEHHHHHHHHHHH
T ss_pred hcCCHHHHhcC---CCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcE---------------EEEEEHHHHHHHHHHH
Confidence 6666542 3678999999999999999 454 6667632211 1199999999999987
Q ss_pred hccc
Q 041297 161 IGLL 164 (379)
Q Consensus 161 ig~l 164 (379)
+..+
T Consensus 145 ~~~~ 148 (150)
T 3lqn_A 145 VRQH 148 (150)
T ss_dssp C---
T ss_pred hHhh
Confidence 7654
No 80
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=98.29 E-value=7.7e-07 Score=74.39 Aligned_cols=124 Identities=10% Similarity=0.047 Sum_probs=86.8
Q ss_pred CCCCcccccccccC--CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchh
Q 041297 167 TPNQPINSHNIIDD--AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAG 244 (379)
Q Consensus 167 ~p~~SI~sLG~I~~--~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAg 244 (379)
+...++.++ ..+ + +..|..++++.+|++.|.+. ..+.+||||.+|+++|-|+..+|... +.. -.
T Consensus 11 l~~~~v~~i--m~~~~~-~~~v~~~~~l~~a~~~m~~~--~~~~~pVvd~~~~lvGivt~~dl~~~-------~~~--~~ 76 (159)
T 1yav_A 11 LLEATVGQF--MIEADK-VAHVQVGNNLEHALLVLTKT--GYTAIPVLDPSYRLHGLIGTNMIMNS-------IFG--LE 76 (159)
T ss_dssp CTTCBHHHH--SEEGGG-SCCEETTCBHHHHHHHHHHH--CCSEEEEECTTCBEEEEEEHHHHHHH-------HBC--SS
T ss_pred HhHhhHHHH--hCCccc-eEEECCCCcHHHHHHHHHhC--CCcEEEEECCCCCEEEEeEHHHHHHH-------hhh--hc
Confidence 445666664 334 6 89999999999999999885 45899999999999999988877430 000 00
Q ss_pred hhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccce
Q 041297 245 DLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAI 324 (379)
Q Consensus 245 df~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~v 324 (379)
+| +. . . . . ....+.--...++
T Consensus 77 ~~----~~---------------------------~-----~-~---------~-------------~~~v~~~m~~~~~ 97 (159)
T 1yav_A 77 RI----EF---------------------------E-----K-L---------D-------------QITVEEVMLTDIP 97 (159)
T ss_dssp SB----CG---------------------------G-----G-T---------T-------------TSBHHHHSBCSCC
T ss_pred cc----ch---------------------------h-----h-h---------c-------------cCCHHHhcCCCCc
Confidence 00 00 0 0 0 0 0000000112578
Q ss_pred eecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297 325 VCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK 365 (379)
Q Consensus 325 tC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~ 365 (379)
++.+..+|.+++..+..+++ +.|+|++|.++|+|+...-
T Consensus 98 ~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~di 136 (159)
T 1yav_A 98 RLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVV 136 (159)
T ss_dssp EEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHH
T ss_pred eEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHH
Confidence 99999999999999999987 9999999999999997543
No 81
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=98.27 E-value=1.6e-06 Score=70.87 Aligned_cols=108 Identities=6% Similarity=0.010 Sum_probs=84.9
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------c
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------C 86 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------V 86 (379)
+-+++....|+.+|++.+.+++...+||-+-+ .++++|+|+.-|++-++.+ |
T Consensus 13 ~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~--------------------~~~lvGivt~~dl~~~~~~~~~~~~~~v 72 (130)
T 3hf7_A 13 EIVGIDINDDWKSIVRQLTHSPHGRIVLYRDS--------------------LDDAISMLRVREAYRLMTEKKEFTKEIM 72 (130)
T ss_dssp GCCEEETTSCHHHHHHHHHTCSSSEEEEESSS--------------------GGGEEEEEEHHHHHHHHTSSSCCCHHHH
T ss_pred HEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC--------------------CCcEEEEEEHHHHHHHHhccCccchhhH
Confidence 44678889999999999999999999998621 2479999999999877653 5
Q ss_pred cccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297 87 FCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI 161 (379)
Q Consensus 87 S~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i 161 (379)
.++.. .+..+.|++++.||++.|. +|+++++|++...+- .=++|++||++.|.+.|
T Consensus 73 ~~~m~----~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~l---------------vGiit~~Dil~~l~g~i 129 (130)
T 3hf7_A 73 LRAAD----EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDI---------------QGLVTVEDILEEIVGDF 129 (130)
T ss_dssp HHHSB----CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCE---------------EEEEEHHHHHHHHHC--
T ss_pred HHhcc----CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCE---------------EEEeeHHHHHHHHhCCC
Confidence 55552 2467999999999999999 689999998643221 11999999999998754
No 82
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=98.26 E-value=1.4e-06 Score=72.69 Aligned_cols=108 Identities=11% Similarity=0.016 Sum_probs=86.8
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeee-cCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----ccc
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIW-SSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-----CFC 88 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw-~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-----VS~ 88 (379)
+-+++....|+.+|++.+.+++...+||- +.+ .++++|+|+.-|++-++.. |++
T Consensus 31 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~--------------------~~~lvGivt~~dl~~~~~~~~~~~v~~ 90 (153)
T 3oco_A 31 SMSVVDVDETIADALLLYLEEQYSRFPVTADND--------------------KDKIIGYAYNYDIVRQARIDDKAKIST 90 (153)
T ss_dssp GCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE--------------------EEEEEEEEEHHHHHHHHHHHTTSBGGG
T ss_pred heEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC--------------------CCcEEEEEEHHHHHhHHhcCCCCcHHH
Confidence 45678889999999999999999999998 421 2479999999999987653 777
Q ss_pred cccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297 89 SFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI 161 (379)
Q Consensus 89 li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i 161 (379)
+. + .+..+.|+++|.+|++.|. +++++++|++...+- .=++|+.||+++|.+-+
T Consensus 91 ~m-~---~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~---------------vGivt~~dil~~l~~~~ 145 (153)
T 3oco_A 91 IM-R---DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGT---------------SGIITDKDVYEELFGNL 145 (153)
T ss_dssp TC-B---CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCE---------------EEEECHHHHHHHHHC--
T ss_pred Hh-C---CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCE---------------EEEeeHHHHHHHHhccC
Confidence 77 3 3578999999999999999 699999998753221 11999999999998754
No 83
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=98.25 E-value=2.1e-06 Score=69.17 Aligned_cols=106 Identities=8% Similarity=0.030 Sum_probs=84.5
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-------cc
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-------CF 87 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-------VS 87 (379)
+-.++....|+.+|++.+.+++...+||.+. ++++|+|+.-|++-.+.+ |+
T Consensus 14 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~Givt~~dl~~~~~~~~~~~~~v~ 71 (128)
T 3gby_A 14 DYPVFTLGGSTADAARRLAASGCACAPVLDG----------------------ERYLGMVHLSRLLEGRKGWPTVKEKLG 71 (128)
T ss_dssp CSCCEETTSBHHHHHHHHHHHTCSEEEEEET----------------------TEEEEEEEHHHHHTTCSSSCCTTCBCC
T ss_pred CcceECCCCCHHHHHHHHHHCCCcEEEEEEC----------------------CEEEEEEEHHHHHHHHhhCCcccCcHH
Confidence 3467778999999999999999999999982 369999999999876653 55
Q ss_pred ccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhh
Q 041297 88 CSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNF 160 (379)
Q Consensus 88 ~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ 160 (379)
++..+ .+..+.|+++|.||++.|. ++.++++|+++..+- .=++|+.|++++|...
T Consensus 72 ~~m~~---~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~---------------~Giit~~dll~~l~~~ 127 (128)
T 3gby_A 72 EELLE---TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRY---------------EGVVSRKRILGFLAER 127 (128)
T ss_dssp GGGCB---CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBE---------------EEEEEHHHHHHHHHTT
T ss_pred HHccC---CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCE---------------EEEEEHHHHHHHHHhh
Confidence 55542 3567999999999999998 689999998642221 1199999999998754
No 84
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=98.24 E-value=1.5e-06 Score=70.17 Aligned_cols=121 Identities=12% Similarity=0.021 Sum_probs=89.4
Q ss_pred CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhh
Q 041297 169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMA 248 (379)
Q Consensus 169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a 248 (379)
+.+++++ .+++ +..++.+++..+|++.|++. +...+||||. |+++|-|+..+|....
T Consensus 4 s~~v~~~--m~~~-~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~-~~~~Givt~~dl~~~~----------------- 60 (128)
T 3gby_A 4 SVTFSYL--AETD-YPVFTLGGSTADAARRLAAS--GCACAPVLDG-ERYLGMVHLSRLLEGR----------------- 60 (128)
T ss_dssp TCBGGGG--CBCC-SCCEETTSBHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHHTTC-----------------
T ss_pred ceEHHHh--hcCC-cceECCCCCHHHHHHHHHHC--CCcEEEEEEC-CEEEEEEEHHHHHHHH-----------------
Confidence 3444443 5677 88999999999999999886 5589999999 9999999988876411
Q ss_pred hhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecC
Q 041297 249 YMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYP 328 (379)
Q Consensus 249 ~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p 328 (379)
..+ . . ...+ - ++. -...++++++
T Consensus 61 --~~~----------------------------~-~-~~~~------v-~~~------------------m~~~~~~v~~ 83 (128)
T 3gby_A 61 --KGW----------------------------P-T-VKEK------L-GEE------------------LLETVRSYRP 83 (128)
T ss_dssp --SSS----------------------------C-C-TTCB------C-CGG------------------GCBCCCCBCT
T ss_pred --hhC----------------------------C-c-ccCc------H-HHH------------------ccCCCcEECC
Confidence 000 0 0 0000 0 000 1234688999
Q ss_pred CCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehhhHHH
Q 041297 329 WSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAKKQQL 369 (379)
Q Consensus 329 ~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~~~~~ 369 (379)
..+|.+++..+..|+.+++-|+|++|.++|+|+.+.--+.+
T Consensus 84 ~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l 124 (128)
T 3gby_A 84 GEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL 124 (128)
T ss_dssp TSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHH
Confidence 99999999999999999999999999999999976544443
No 85
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=98.24 E-value=2.5e-06 Score=71.75 Aligned_cols=114 Identities=18% Similarity=0.112 Sum_probs=86.7
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecc----------
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC---------- 84 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la---------- 84 (379)
+-+++....|+.+|++.+.+++...+||-+. .++++|+|+.-||+-++.
T Consensus 15 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---------------------~~~~~Givt~~dl~~~~~~~~~~~~~~~ 73 (180)
T 3sl7_A 15 NLHVVKPSTSVDDALELLVEKKVTGLPVIDD---------------------NWTLVGVVSDYDLLALDSISGRSQNDTN 73 (180)
T ss_dssp GCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---------------------TCBEEEEEEHHHHTCC------------
T ss_pred CceeeCCCCcHHHHHHHHHHcCCCeEEEECC---------------------CCeEEEEEEHHHHHhhhhhccccCCccc
Confidence 4567888999999999999999999999873 246999999999985431
Q ss_pred -------------------------cccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCccc
Q 041297 85 -------------------------PCFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKST 138 (379)
Q Consensus 85 -------------------------~VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~ 138 (379)
.|+++..+ .+..+.|+++|.+|++.|. .|+++++|++...+-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~--------- 141 (180)
T 3sl7_A 74 LFPDVDSTWKTFNELQKLISKTYGKVVGDLMTP---SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKL--------- 141 (180)
T ss_dssp -------CCCSHHHHHHHHHTTTTCBHHHHSEE---SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBE---------
T ss_pred ccccccchhhhhHHHHHHHhccccccHHHHhCC---CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeE---------
Confidence 14444432 2467999999999999999 599999998743221
Q ss_pred ccCCcceEEeeHHHHHHHHHhhhcccCCC
Q 041297 139 FHNDSEYCWLTQEDLIRYFLNFIGLLNPT 167 (379)
Q Consensus 139 ~~~~~~yC~LTQeDVvRFLl~~ig~l~p~ 167 (379)
.-++|+.||++++.+....+..-
T Consensus 142 ------vGiit~~dil~~~~~~~~~~~~~ 164 (180)
T 3sl7_A 142 ------IGILTRGNVVRAALQIKRNADSI 164 (180)
T ss_dssp ------EEEEEHHHHHHHHHHHHHTC---
T ss_pred ------EEEEEHHHHHHHHHHHhhhhhhh
Confidence 12999999999999877655544
No 86
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=98.24 E-value=4.5e-07 Score=76.35 Aligned_cols=114 Identities=11% Similarity=0.125 Sum_probs=87.0
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhccc
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLL 164 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l 164 (379)
|+++.-+. .-+..+.|++++-||++.|. +|..+++|++....+ -.=++|..|+++++.+.
T Consensus 40 v~diM~~~-~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~--------------lvGivt~~dl~~~~~~~---- 100 (156)
T 3oi8_A 40 VRDAMITR-SRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDE--------------VLGILHAKDLLKYMFNP---- 100 (156)
T ss_dssp GGGTCEEG-GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTC--------------EEEEEEGGGGGGGSSCG----
T ss_pred HhheeeeH-HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCc--------------EEEEEEHHHHHHHHHcC----
Confidence 66666421 23678999999999999999 589999997653211 01189999999876543
Q ss_pred CCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 165 NPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 165 ~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
+..++.++= ++ ++.|+.+++..+|++.|.+. +...+||||.+|+++|-|+..||
T Consensus 101 ---~~~~v~~im---~~-~~~v~~~~~l~~a~~~m~~~--~~~~~~Vvd~~g~~~Givt~~Di 154 (156)
T 3oi8_A 101 ---EQFHLKSIL---RP-AVFVPEGKSLTALLKEFREQ--RNHMAIVIDEYGGTSGLVTFEDI 154 (156)
T ss_dssp ---GGCCHHHHC---BC-CCEEETTSBHHHHHHHHHHT--TCCEEEEECTTSSEEEEEEHHHH
T ss_pred ---CcccHHHHc---CC-CEEECCCCCHHHHHHHHHhc--CCeEEEEECCCCCEEEEEEHHHh
Confidence 344555542 45 78999999999999999886 45889999999999999998776
No 87
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=98.23 E-value=7.7e-07 Score=71.70 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=81.5
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHH-HHHhhhcccCCCCCCcccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIR-YFLNFIGLLNPTPNQPINS 174 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvR-FLl~~ig~l~p~p~~SI~s 174 (379)
+..+.|++++.||++.|. +|.+.++|++...+- .=++|..|+++ ++.... .....++.+
T Consensus 18 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---------------~Givt~~dl~~~~~~~~~----~~~~~~v~~ 78 (133)
T 1y5h_A 18 VTCVGEHETLTAAAQYMREHDIGALPICGDDDRL---------------HGMLTDRDIVIKGLAAGL----DPNTATAGE 78 (133)
T ss_dssp CCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBE---------------EEEEEHHHHHHTTGGGTC----CTTTSBHHH
T ss_pred ceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeE---------------EEEEeHHHHHHHHHhcCC----CccccCHHH
Confidence 456899999999999998 589999988542111 12899999995 554321 122445555
Q ss_pred cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+ .+++ +..++.+++..+|++.|.+. ....+||||. |+++|-||..||-
T Consensus 79 ~--m~~~-~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~-g~~~Giit~~dil 126 (133)
T 1y5h_A 79 L--ARDS-IYYVDANASIQEMLNVMEEH--QVRRVPVISE-HRLVGIVTEADIA 126 (133)
T ss_dssp H--HTTC-CCCEETTCCHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHH
T ss_pred H--hcCC-CEEECCCCCHHHHHHHHHHc--CCCEEEEEEC-CEEEEEEEHHHHH
Confidence 3 4466 89999999999999999886 4578999998 9999999988763
No 88
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=98.22 E-value=8.8e-07 Score=75.02 Aligned_cols=130 Identities=10% Similarity=0.007 Sum_probs=81.0
Q ss_pred EEEE--ecCCchhcHHHHHHhccccCceeEEE--cCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhh
Q 041297 183 ILAI--HYDDPAAFAIPLIAQSHIKQTSVAIV--DEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKD 258 (379)
Q Consensus 183 v~aV--~~~~~A~~Ai~lm~~a~~~~tAVAVV--d~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~ 258 (379)
+..| ..++++.+|+++|.+. ..+.+||| |.+|+++|-|+..+|...- .. +. .. ..
T Consensus 25 ~~~v~~~~~~~~~~a~~~~~~~--~~~~~pVv~~d~~~~lvGiit~~dl~~~~-------~~---~~----~~----~~- 83 (185)
T 2j9l_A 25 LLTVLTQDSMTVEDVETIISET--TYSGFPVVVSRESQRLVGFVLRRDLIISI-------EN---AR----KK----QD- 83 (185)
T ss_dssp CCCCEESSCEEHHHHHHHHHHC--CCSEEEEESCTTTCBEEEEEEHHHHHHHH-------HH---HH----TS----CS-
T ss_pred eEEEecCCCccHHHHHHHHHhc--CCCceeEEEECCCCeEEEEEEHHHHHHHH-------Hh---hc----cc----CC-
Confidence 5667 9999999999999886 45899999 7889999999988875411 00 00 00 00
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHH
Q 041297 259 LVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQ 338 (379)
Q Consensus 259 l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQ 338 (379)
+ ++.+. . .-+ ... . .+. ..........+.--...++++.+..+|.+++.+
T Consensus 84 ------------~------~~~~~-~-~~~---~~~-~-~~~-----~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~ 133 (185)
T 2j9l_A 84 ------------G------VVSTS-I-IYF---TEH-S-PPL-----PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDI 133 (185)
T ss_dssp ------------C------CCTTC-E-EEC---SSS-C-CCC-----CTTCCCCEECGGGEESSCCEEETTSBHHHHHHH
T ss_pred ------------C------ccccc-e-eec---ccC-C-ccc-----ccccccCccHHHhhCcCCeEeCCCCCHHHHHHH
Confidence 0 00000 0 000 000 0 000 000000000111112357899999999999999
Q ss_pred HHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 339 ALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 339 AlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
+..|+.+++.|+| +|.++|+|+..-
T Consensus 134 m~~~~~~~l~Vvd-~g~~vGiit~~d 158 (185)
T 2j9l_A 134 FRKLGLRQCLVTH-NGRLLGIITKKD 158 (185)
T ss_dssp HHHHTCSEEEEEE-TTEEEEEEEHHH
T ss_pred HHhCCCcEEEEEE-CCEEEEEEEHHH
Confidence 9999999999999 899999999754
No 89
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=98.20 E-value=1.9e-06 Score=71.57 Aligned_cols=112 Identities=13% Similarity=0.169 Sum_probs=86.3
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc---------
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--------- 85 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--------- 85 (379)
+-+++....|+.+|+..+.+++...+||.+.+ ++++|+|+.-||+-++..
T Consensus 26 ~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~---------------------~~~~Giit~~dl~~~~~~~~~~~~~~~ 84 (156)
T 3ctu_A 26 NLAVLIDTHNADHATLLLSQMTYTRVPVVTDE---------------------KQFVGTIGLRDIMAYQMEHDLSQEIMA 84 (156)
T ss_dssp GCCCEETTSBHHHHHHHHTTCSSSEEEEECC----------------------CBEEEEEEHHHHHHHHHHHTCCHHHHT
T ss_pred CceEECCCCCHHHHHHHHHHCCCceEeEECCC---------------------CEEEEEEcHHHHHHHHHhccccccccc
Confidence 44678889999999999999999999999732 469999999999987641
Q ss_pred ---ccccccCCCCceEEeCCCCchhHHHHHHhcCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc
Q 041297 86 ---CFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG 162 (379)
Q Consensus 86 ---VS~li~~~~gll~~V~P~tsLLdAie~m~~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig 162 (379)
|+++..+ .+..+.|++++.||++.|.+. ++++|++...+- .=++|+.||++++.+.+.
T Consensus 85 ~~~v~~~m~~---~~~~v~~~~~l~~a~~~~~~~-~~lpVvd~~g~~---------------~Giit~~dil~~l~~~~~ 145 (156)
T 3ctu_A 85 DTDIVHMTKT---DVAVVSPDFTITEVLHKLVDE-SFLPVVDAEGIF---------------QGIITRKSILKAVNALLH 145 (156)
T ss_dssp TSBGGGGCBC---SCCCBCSSCCHHHHHHHTTTS-SEEEEECTTSBE---------------EEEEETTHHHHHHHHHSC
T ss_pred cCcHHHhccC---CceeeCCCCcHHHHHHHHHHc-CeEEEEcCCCeE---------------EEEEEHHHHHHHHHHHHH
Confidence 6666643 356799999999999999964 367777642221 119999999999999887
Q ss_pred ccCC
Q 041297 163 LLNP 166 (379)
Q Consensus 163 ~l~p 166 (379)
.+..
T Consensus 146 ~~~~ 149 (156)
T 3ctu_A 146 DFSK 149 (156)
T ss_dssp C---
T ss_pred hhch
Confidence 6653
No 90
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.20 E-value=6.3e-06 Score=73.45 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=87.7
Q ss_pred ccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--cccccc
Q 041297 14 CDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP--CFCSFA 91 (379)
Q Consensus 14 ~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~--VS~li~ 91 (379)
-+-+++....|+.+|++.+.+++...+||-+. .++++|+|+.-|+..++.. |+++..
T Consensus 21 ~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---------------------~~~l~Givt~~dl~~~~~~~~v~~im~ 79 (213)
T 1vr9_A 21 QDFPMVEESATVRECLHRMRQYQTNECIVKDR---------------------EGHFRGVVNKEDLLDLDLDSSVFNKVS 79 (213)
T ss_dssp SCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---------------------TSBEEEEEEGGGGTTSCTTSBSGGGCB
T ss_pred CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC---------------------CCEEEEEEEHHHHHhhcCCCcHHHHcc
Confidence 45577888999999999999999999999863 2469999999999876653 777764
Q ss_pred CCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCC
Q 041297 92 KDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQ 170 (379)
Q Consensus 92 ~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~ 170 (379)
+ .+..+.|++++.||++.|. +|+++++|++...+- .-++|+.|+++++....+. .-+..
T Consensus 80 ~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l---------------vGiit~~Dil~~~~~~~~~--~~~~~ 139 (213)
T 1vr9_A 80 L---PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRL---------------KGAVSLHDFLEALIEALAM--DVPGI 139 (213)
T ss_dssp C---TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBE---------------EEEEEHHHHHHHHHHSCC--------
T ss_pred C---CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEE---------------EEEEEHHHHHHHHHHHhcC--CCCcE
Confidence 3 3578999999999999999 699999998753211 1299999999988753321 00000
Q ss_pred cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCC
Q 041297 171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEG 216 (379)
Q Consensus 171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dG 216 (379)
.|-. .......+..+|.++|.+. ....++|++.+|
T Consensus 140 ---~l~~------~~~~~~~~l~~~~~~l~~~--~~~~l~V~~~~~ 174 (213)
T 1vr9_A 140 ---RFSV------LLEDKPGELRKVVDALALS--NINILSVITTRS 174 (213)
T ss_dssp ----------------------------------------------
T ss_pred ---EEEE------EeCCCCccHHHHHHHHHHC--CCcEEEEEEEec
Confidence 1111 1112233467778888775 336677776655
No 91
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=98.18 E-value=2.8e-06 Score=79.54 Aligned_cols=118 Identities=15% Similarity=0.087 Sum_probs=91.7
Q ss_pred CCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccc---cCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcc
Q 041297 166 PTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHI---KQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLL 242 (379)
Q Consensus 166 p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~---~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLS 242 (379)
..+..++.++ .+++ +.+|..++++.+|++.|++.-. ..+.+||||.+|+++|-|+..+|...+. ...
T Consensus 133 ~~~~~~v~~i--M~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~~-------~~~ 202 (286)
T 2oux_A 133 HYEDETAGAI--MTTE-FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDD-------DTL 202 (286)
T ss_dssp TSCTTBHHHH--CBSC-CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSCT-------TSB
T ss_pred cCChHHHHHh--CCCC-ceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCCC-------CCc
Confidence 4566677654 5677 9999999999999999987522 3467999999999999999998865310 000
Q ss_pred hhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCcc
Q 041297 243 AGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSE 322 (379)
Q Consensus 243 Agdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~ 322 (379)
+.++ -...
T Consensus 203 v~~i------------------------------------------------------------------------m~~~ 210 (286)
T 2oux_A 203 IADI------------------------------------------------------------------------LNER 210 (286)
T ss_dssp HHHH------------------------------------------------------------------------SBSC
T ss_pred HHHH------------------------------------------------------------------------cCCC
Confidence 1111 0123
Q ss_pred ceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeehh
Q 041297 323 AIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQAK 365 (379)
Q Consensus 323 ~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~~ 365 (379)
++++++..++..|+..+..|+.+++-|||++|.++|+|++.--
T Consensus 211 ~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Di 253 (286)
T 2oux_A 211 VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDI 253 (286)
T ss_dssp CCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHH
T ss_pred CeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHH
Confidence 6889999999999999999999999999999999999997543
No 92
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=98.15 E-value=2.7e-06 Score=78.74 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=87.6
Q ss_pred CCcccccccccCCcEEEEecCCchhcHHHHHHhccc---cCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhh
Q 041297 169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHI---KQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGD 245 (379)
Q Consensus 169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~---~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgd 245 (379)
..++.+ +.+++ +.+|..++++.+|++.|++... +...+||||.+|+++|-|+..+|...
T Consensus 134 ~~~v~~--iM~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~--------------- 195 (278)
T 2yvy_A 134 EDEAGG--LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--------------- 195 (278)
T ss_dssp TTBGGG--TCBSC-CCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS---------------
T ss_pred cchHHh--hcCCC-ceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC---------------
Confidence 444543 45677 9999999999999999987532 45899999999999999987776421
Q ss_pred hhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCcccee
Q 041297 246 LMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIV 325 (379)
Q Consensus 246 f~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vt 325 (379)
+.. ... .+. -...+++
T Consensus 196 -----~~~--------------------------------~~v---------~~i------------------m~~~~~~ 211 (278)
T 2yvy_A 196 -----DPR--------------------------------TRV---------AEI------------------MNPKVVY 211 (278)
T ss_dssp -----CTT--------------------------------CBS---------TTT------------------SBSSCCC
T ss_pred -----CCC--------------------------------CcH---------HHH------------------hCCCCeE
Confidence 000 000 000 1134789
Q ss_pred ecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 326 CYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 326 C~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
+++..++..++..+..|+.+++-|||++|.++|+|++.-
T Consensus 212 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~D 250 (278)
T 2yvy_A 212 VRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDD 250 (278)
T ss_dssp EETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred EeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHH
Confidence 999999999999999999999999999999999999753
No 93
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=98.07 E-value=5e-06 Score=72.10 Aligned_cols=107 Identities=12% Similarity=-0.005 Sum_probs=85.7
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc-----cccc
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-----CFCS 89 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-----VS~l 89 (379)
+-+++....|+.+|+..+.+++...+||.+.+ ..+++|+|+.-|++.++.+ |+ +
T Consensus 47 ~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~--------------------~~~lvGivt~~Dl~~~~~~~~~~~v~-~ 105 (173)
T 3ocm_A 47 DVSWVNIDDDAATIRQQLTAAPHSFFPVCRGS--------------------LDEVVGIGRAKDLVADLITEGRVRRN-R 105 (173)
T ss_dssp GCCCEETTSCHHHHHHHHHHSSCSEEEEESSS--------------------TTSEEEEEEHHHHHHHHHHHSSCCGG-G
T ss_pred HeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCC--------------------CCCEEEEEEHHHHHHHHhcCCcchhH-h
Confidence 45678889999999999999999999998632 2479999999999987642 65 3
Q ss_pred ccCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297 90 FAKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI 161 (379)
Q Consensus 90 i~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i 161 (379)
.. .+..|.|+++|.+|++.|. ++++.++|++...+-. =++|++||++.|.+-+
T Consensus 106 ~~----~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lv---------------GiIT~~Dil~~l~~~i 159 (173)
T 3ocm_A 106 LR----DPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIE---------------GLVTPIDVFEAIAGEF 159 (173)
T ss_dssp SB----CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEE---------------EEECHHHHHHHHHCCC
T ss_pred cC----CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEE---------------EEEeHHHHHHHHhCcC
Confidence 32 2468999999999999999 6899999986432211 1999999999998754
No 94
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=98.05 E-value=4.2e-06 Score=75.12 Aligned_cols=47 Identities=26% Similarity=0.459 Sum_probs=39.8
Q ss_pred CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
++ +..+..++++.+|++.|.+. +.+.+||||.+|+++|=|+..||-.
T Consensus 194 ~~-~~~~~~~~~~~~~~~~m~~~--~~~~~pVvd~~~~~~Giit~~dll~ 240 (245)
T 3l2b_A 194 DN-LVAVSTDDLVEDVKVTMSET--RYSNYPVIDENNKVVGSIARFHLIS 240 (245)
T ss_dssp TT-CCCEETTSBHHHHHHHHHHH--CCSEEEEECTTCBEEEEEECC----
T ss_pred Cc-cEEECCCCcHHHHHHHHHhc--CCceEEEEcCCCeEEEEEEHHHhhc
Confidence 55 99999999999999999986 5599999999999999999999854
No 95
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=97.98 E-value=9e-06 Score=72.76 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=84.6
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHhc----CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhh
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLLG----GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFI 161 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~~----G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~i 161 (379)
|+++.-. -+..+.|++++-||++.|.+ +++.++|++...+-. =++|..|+++.
T Consensus 56 v~~iM~~---~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lv---------------Givt~~dll~~----- 112 (205)
T 3kxr_A 56 IGRYTDH---QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYL---------------GTVRRYDIFKH----- 112 (205)
T ss_dssp GGGGCBC---CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEE---------------EEEEHHHHTTS-----
T ss_pred HHhhccC---ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEE---------------EEEEHHHHHhC-----
Confidence 5555532 25689999999999999996 788888876532211 18888888642
Q ss_pred cccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 162 GLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 162 g~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
-+..+|.++ .+++ +..|+.+++..+|++.|++. +...+||||.+|+++|=|+..|+-
T Consensus 113 -----~~~~~v~~i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVVD~~g~lvGiIT~~Dil 169 (205)
T 3kxr_A 113 -----EPHEPLISL--LSED-SRALTANTTLLDAAEAIEHS--REIELPVIDDAGELIGRVTLRAAT 169 (205)
T ss_dssp -----CTTSBGGGG--CCSS-CCCEETTSCHHHHHHHHHTS--SCSEEEEECTTSBEEEEEEHHHHH
T ss_pred -----CCcchHHHH--hcCC-CeEECCCCCHHHHHHHHHhc--CCCEEEEEcCCCeEEEEEEHHHHH
Confidence 245666664 5677 99999999999999999886 558999999999999999877763
No 96
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=97.94 E-value=1.1e-05 Score=72.43 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=46.8
Q ss_pred CCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
..+++++ .+++ +..|..+++..+|+++|++. ....+||||.+|+++|=|+..||..
T Consensus 6 ~~~v~~i--m~~~-~~~v~~~~~~~~a~~~m~~~--~~~~lpVvd~~~~l~Giit~~di~~ 61 (245)
T 3l2b_A 6 KLKVEDL--EMDK-IAPLAPEVSLKMAWNIMRDK--NLKSIPVADGNNHLLGMLSTSNITA 61 (245)
T ss_dssp CCBGGGS--CCBC-CCCBCTTCBHHHHHHHHHHT--TCSEEEEECTTCBEEEEEEHHHHHH
T ss_pred cCcHHHh--cCCC-CcEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCEEEEEEEHHHHHH
Confidence 3455555 3466 88999999999999999885 5589999999999999999999864
No 97
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=97.83 E-value=3.6e-05 Score=71.20 Aligned_cols=110 Identities=19% Similarity=0.218 Sum_probs=85.5
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHhc------CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHh
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLLG------GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN 159 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~~------G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~ 159 (379)
|+++.-. -+..|.|++++-+|++.|.+ ++.++.|++...+- .=++|..|+++.
T Consensus 137 v~~iM~~---~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~l---------------vGivt~~dll~~--- 195 (278)
T 2yvy_A 137 AGGLMTP---EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRL---------------KGVLSLRDLIVA--- 195 (278)
T ss_dssp GGGTCBS---CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBE---------------EEEEEHHHHHHS---
T ss_pred HHhhcCC---CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCE---------------EEEEEHHHHhcC---
Confidence 5555532 36779999999999999996 68889887653211 118999999864
Q ss_pred hhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 160 FIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 160 ~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
-+..+|.++ .+++ +..|+.+++..+|++.|++. +...+||||.+|+++|-|+..|+-
T Consensus 196 -------~~~~~v~~i--m~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~lvGivT~~Dil 252 (278)
T 2yvy_A 196 -------DPRTRVAEI--MNPK-VVYVRTDTDQEEVARLMADY--DFTVLPVVDEEGRLVGIVTVDDVL 252 (278)
T ss_dssp -------CTTCBSTTT--SBSS-CCCEETTSBHHHHHHHHHHH--TCSEEEEECTTSBEEEEEEHHHHH
T ss_pred -------CCCCcHHHH--hCCC-CeEEeCCCCHHHHHHHHHhc--CCCEEEEEeCCCeEEEEEEHHHHH
Confidence 135566654 4577 99999999999999999886 458999999999999999887764
No 98
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=97.81 E-value=1.9e-05 Score=73.89 Aligned_cols=102 Identities=14% Similarity=0.192 Sum_probs=82.0
Q ss_pred eEEeCCCCchhHHHHHHhc------CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCC
Q 041297 97 VRHLKPSASLLEAVDLLLG------GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQ 170 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~~------G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~ 170 (379)
+..|.|++++-+|++.|.+ |+.++.|++...+- .=++|..|+++. .+..
T Consensus 147 ~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~l---------------vGivt~~dll~~----------~~~~ 201 (286)
T 2oux_A 147 FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHL---------------VGVISLRDLIVN----------DDDT 201 (286)
T ss_dssp CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBE---------------EEEEEHHHHTTS----------CTTS
T ss_pred ceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeE---------------EEEEEHHHHHcC----------CCCC
Confidence 6789999999999999985 78889998653221 118999998874 2455
Q ss_pred cccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 171 PINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 171 SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+|.++ .+++ +..|+.+++..+|++.|++. +...+||||.+|+++|-|+..|+-
T Consensus 202 ~v~~i--m~~~-~~~v~~~~~l~ea~~~m~~~--~~~~lpVVd~~g~lvGiIT~~Dil 254 (286)
T 2oux_A 202 LIADI--LNER-VISVHVGDDQEDVAQTIRDY--DFLAVPVTDYDDHLLGIVTVDDII 254 (286)
T ss_dssp BHHHH--SBSC-CCCEETTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHH
T ss_pred cHHHH--cCCC-CeeecCCCCHHHHHHHHHHc--CCcEEEEEcCCCeEEEEEEHHHHH
Confidence 66653 4577 99999999999999999886 458999999999999999887764
No 99
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=97.69 E-value=2.3e-05 Score=81.74 Aligned_cols=163 Identities=14% Similarity=0.136 Sum_probs=88.3
Q ss_pred CCccccccccc--CCcEEEEecCCchhcHHHHHH-hccccCceeEEEcCCCcEEeeeCccccCCCcHHH-HHHHHhcchh
Q 041297 169 NQPINSHNIID--DAGILAIHYDDPAAFAIPLIA-QSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETV-AAAIATLLAG 244 (379)
Q Consensus 169 ~~SI~sLG~I~--~~~v~aV~~~~~A~~Ai~lm~-~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~-a~A~atLSAg 244 (379)
..+++++ .+ ++ +..++.+++..++++.|+ +. +.+.+||||++|+++|-|+-.||..--... ...-..++..
T Consensus 452 ~~~V~di--M~p~~~-v~~v~~~~t~~e~~~~~~~~~--~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~ 526 (632)
T 3org_A 452 EMTAREI--MHPIEG-EPHLFPDSEPQHIKGILEKFP--NRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGH 526 (632)
T ss_dssp TSBHHHH--CBCTTT-SCCBCSSSCHHHHHHHHHHST--TCCEECBBCTTCBBCCEESHHHHTTTTTTC-----------
T ss_pred cCcHHHH--hhcCCC-ceEecCCCcHHHHHHHHHhcC--CcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccc
Confidence 4455554 34 56 889999999999999998 65 568999999999999999999997632110 0000001111
Q ss_pred hhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccce
Q 041297 245 DLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAI 324 (379)
Q Consensus 245 df~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~v 324 (379)
+.....+ .+++. +.++. ..+ ... ... ...+.|... ..+. .......-=+++++
T Consensus 527 ~~~~~~~----~~~l~---------~~~~~---~~~-~~~-~~~-----~~~~~e~~~--~~~~--~~~~v~~iMt~~pi 579 (632)
T 3org_A 527 RTLVLLD----AADLS---------ENIEG---LVD-ETP-SGE-----HSSKGKRTA--TVLE--PTSSLVVPCDVSPI 579 (632)
T ss_dssp -----------------------------------------------------------------------CCSCCCCCC
T ss_pred cceeccC----HHHHH---------hhccc---CCC-CCc-ccc-----hhhhcccce--Eeec--cccccchhhcCCCc
Confidence 1111111 01110 01110 000 000 000 000000000 0000 00001111235589
Q ss_pred eecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 325 VCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 325 tC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
|+.+..++.+++.+|..|+.|++=|| ++|.++|+|+.+.
T Consensus 580 tV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~D 618 (632)
T 3org_A 580 VVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVERED 618 (632)
T ss_dssp EEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGG
T ss_pred eecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhh
Confidence 99999999999999999999999999 7899999998753
No 100
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=97.63 E-value=7.8e-05 Score=75.24 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=87.2
Q ss_pred CCcccccccccCCcEEEEecCCchhcHHHHHHhccc---cCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhh
Q 041297 169 NQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHI---KQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGD 245 (379)
Q Consensus 169 ~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~---~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgd 245 (379)
..++.+ +.+++ +.+++.++++-+|++.|++.-. +.+.+||||.+|+++|-++..||...
T Consensus 154 ~~~v~~--iM~~~-~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~--------------- 215 (473)
T 2zy9_A 154 EDEAGG--LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA--------------- 215 (473)
T ss_dssp TTBSTT--TCBSC-EEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS---------------
T ss_pred CCCHHH--hCCCC-ceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC---------------
Confidence 444443 35577 9999999999999999987521 34789999999999999987766421
Q ss_pred hhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCcccee
Q 041297 246 LMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIV 325 (379)
Q Consensus 246 f~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vt 325 (379)
+...| - .+. -.+++++
T Consensus 216 -----~~~~~--------------------------------v---------~di------------------m~~~~~~ 231 (473)
T 2zy9_A 216 -----DPRTR--------------------------------V---------AEI------------------MNPKVVY 231 (473)
T ss_dssp -----CTTSB--------------------------------G---------GGT------------------SBSSCCC
T ss_pred -----CCCCc--------------------------------H---------HHH------------------hCCCCeE
Confidence 00000 0 000 1134789
Q ss_pred ecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 326 CYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 326 C~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
+++..++.+++..+..|+.+++-|||++|.++|+|.+.-
T Consensus 232 v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~D 270 (473)
T 2zy9_A 232 VRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDD 270 (473)
T ss_dssp EESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred EeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHh
Confidence 999999999999999999999999999999999999754
No 101
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=97.63 E-value=8.5e-06 Score=82.93 Aligned_cols=107 Identities=10% Similarity=0.021 Sum_probs=0.0
Q ss_pred cCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC---CcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCC
Q 041297 179 DDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE---GRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRP 255 (379)
Q Consensus 179 ~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d---GkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~p 255 (379)
.++ +..|+.++++.+|+++|++. ..+.+||||.+ |+++|-|+..||..- . -+...|
T Consensus 104 ~~~-~~~v~~~~tv~eal~~m~~~--~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-----~-------------~~~~~~ 162 (503)
T 1me8_A 104 VVS-DSNVKPDQTFADVLAISQRT--THNTVAVTDDGTPHGVLLGLVTQRDYPID-----L-------------TQTETK 162 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccC-CeEECCCCcHHHHHHHHHHc--CceEEEEEECCCcCCeEEEEEEHHHHHhh-----h-------------ccccCc
Confidence 456 89999999999999999886 45899999998 899999999998741 0 000000
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHH
Q 041297 256 LKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAV 335 (379)
Q Consensus 256 pe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAV 335 (379)
- .+. +.+..+++++.+..||.++
T Consensus 163 --------------------------------V---------~di----------------M~~~~~~~tv~~~~sl~ea 185 (503)
T 1me8_A 163 --------------------------------V---------SDM----------------MTPFSKLVTAHQDTKLSEA 185 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------H---------HHH----------------hCCCCCCEEEcCCCcHHHH
Confidence 0 000 1122347999999999999
Q ss_pred HHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 336 IMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 336 MaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
+..+..|+++++-|||++|.++|+|+..
T Consensus 186 ~~~m~~~~i~~lpVVDe~g~lvGiIT~~ 213 (503)
T 1me8_A 186 NKIIWEKKLNALPIIDDDQHLRYIVFRK 213 (503)
T ss_dssp ----------------------------
T ss_pred HHHHHHcCCCEEEEEcCCCeEEEEEEec
Confidence 9999999999999999999999999875
No 102
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=97.56 E-value=8.4e-05 Score=75.46 Aligned_cols=114 Identities=14% Similarity=0.118 Sum_probs=86.3
Q ss_pred ccccccCCCCceEEeCCC-CchhHHHHHHh-cCccEEEEec-CCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc
Q 041297 86 CFCSFAKDSGIVRHLKPS-ASLLEAVDLLL-GGVQNLVILP-AGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG 162 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~-tsLLdAie~m~-~G~~rllVi~-s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig 162 (379)
|+++.- .-+.+|+|+ +++.||+++|. +++.+++|++ +..+- .=++|..||++++....
T Consensus 386 V~diM~---~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~l---------------vGiVt~~Dll~~l~~~~- 446 (527)
T 3pc3_A 386 IAELEL---PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSV---------------LGVVGQETLITQIVSMN- 446 (527)
T ss_dssp GGGGCC---CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCE---------------EEEEEHHHHHHHHHHHC-
T ss_pred HHHhCc---CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEE---------------EEEEEHHHHHHHHHhcc-
Confidence 445443 236679999 99999999999 6999999987 32211 11999999999998742
Q ss_pred ccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC----CcEEeeeCccccC
Q 041297 163 LLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE----GRLVGDISPFSLN 228 (379)
Q Consensus 163 ~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d----GkLIGeISa~~L~ 228 (379)
..+..+|.++ .+++ +..|+.+++..+|+++|.+. .-+||||.+ |+++|=|+..||-
T Consensus 447 ---~~~~~~V~~i--m~~~-~~~v~~~~~l~~a~~~m~~~----~~~pVVd~~~~~~g~lvGIVT~~Dll 506 (527)
T 3pc3_A 447 ---RQQSDPAIKA--LNKR-VIRLNESEILGKLARVLEVD----PSVLILGKNPAGKVELKALATKLDVT 506 (527)
T ss_dssp ---CCTTSBGGGG--EETT-CCEEETTSBHHHHHHHHTTC----SEEEEEEECSSSCEEEEEEEEHHHHH
T ss_pred ---CcCCCcHHHH--hcCC-CeEECCCCcHHHHHHHHhhC----CEEEEEeCCcccCCeEEEEEEHHHHH
Confidence 1235566654 5677 99999999999999999653 347999985 8999999877763
No 103
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=97.51 E-value=0.00022 Score=66.61 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=43.0
Q ss_pred ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCC--CcEEeeeCccccCC
Q 041297 178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEE--GRLVGDISPFSLNS 229 (379)
Q Consensus 178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~d--GkLIGeISa~~L~~ 229 (379)
-.++ +..|..++++.+|.++|.+. +.+++||||.+ |+|||-|+-.||..
T Consensus 19 Mt~~-vvtv~~~~tv~~~~~lm~~~--~~~~~PVVd~~~~~~LvGiIt~~dl~~ 69 (250)
T 2d4z_A 19 MVRD-VTSIASTSTYGDLLHVLRQT--KLKFFPFVDTPDTNTLLGSIDRTEVEG 69 (250)
T ss_dssp SBSS-CCCEETTCBHHHHHHHHHHC--CCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred cCCC-CeEECCCCCHHHHHHHHHhc--CCCEEEEEecCCCCeEEEEEEHHHHHH
Confidence 4577 99999999999999999886 56999999984 69999999999864
No 104
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=97.47 E-value=0.00011 Score=73.74 Aligned_cols=126 Identities=11% Similarity=0.035 Sum_probs=92.5
Q ss_pred eeHHHHHHHHHhhhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEc--CCCcEEeeeCcc
Q 041297 148 LTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVD--EEGRLVGDISPF 225 (379)
Q Consensus 148 LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd--~dGkLIGeISa~ 225 (379)
+|.++.-+++..-.. + .+ +..++ ++.++.+++..+|+++|++. ..+.+||+| .+|+++|-|+..
T Consensus 77 ~~~e~~~~~i~~v~~-~--------~~--im~~~-~~~v~~~~tv~ea~~~m~~~--~~~~~pVvd~~~~~~lvGivt~~ 142 (491)
T 1zfj_A 77 MSITEQAEEVRKVKR-S--------EN--GVIID-PFFLTPEHKVSEAEELMQRY--RISGVPIVETLANRKLVGIITNR 142 (491)
T ss_dssp SCHHHHHHHHHHHHH-H--------TT--TTSSS-CCCBCSSSBHHHHHHHHHHT--TCSEEEEESCTTTCBEEEEEEHH
T ss_pred CCHHHHHHHHHHHhh-H--------Hh--cCcCC-CeEECCCCcHHHHHHHHHHc--CCCEEEEEEeCCCCEEEEEEEHH
Confidence 466666666544222 1 11 34456 88899999999999999886 568999999 789999999988
Q ss_pred ccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccC
Q 041297 226 SLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSA 305 (379)
Q Consensus 226 ~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~ 305 (379)
||... .+.. ... .+.
T Consensus 143 Dl~~~-------------------~~~~--------------------------------~~v---------~~i----- 157 (491)
T 1zfj_A 143 DMRFI-------------------SDYN--------------------------------API---------SEH----- 157 (491)
T ss_dssp HHHHC-------------------SCSS--------------------------------SBT---------TTS-----
T ss_pred HHhhh-------------------ccCC--------------------------------CcH---------HHH-----
Confidence 87431 0100 000 000
Q ss_pred CcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 306 RSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 306 ~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
+ .+..++++.+..+|.+++..+..|+.+++.|||++|.++|+|+..-
T Consensus 158 -----------m-~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~D 204 (491)
T 1zfj_A 158 -----------M-TSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKD 204 (491)
T ss_dssp -----------C-CCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHH
T ss_pred -----------c-CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHH
Confidence 1 1125789999999999999999999999999999999999998643
No 105
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=97.46 E-value=1.7e-05 Score=79.80 Aligned_cols=127 Identities=22% Similarity=0.165 Sum_probs=7.9
Q ss_pred eeHHHHHHHHHhhhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 148 LTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 148 LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
+|.||..+|+..-.. +.+ +..++ +..|..+++..+|+++|++. ..+.+||||.+|+++|-|+..||
T Consensus 82 ~~~e~~~~~v~~v~~---------~~~--iM~~~-~~~v~~~~tv~ea~~~m~~~--~~~~~pVvd~~~~lvGivt~~Dl 147 (494)
T 1vrd_A 82 LTPDEQARQVSIVKK---------TEN--GIIYD-PITVTPDMTVKEAIDLMAEY--KIGGLPVVDEEGRLVGLLTNRDV 147 (494)
T ss_dssp SCHHHHHHHHHHHHT---------C-------------------------------------------------------
T ss_pred CChHHHHHHHHhhhh---------Hhh--cCccC-CeEECCCCCHHHHHHHHHHc--CceEEEEEcCCCEEEEEEEHHHH
Confidence 566676666543221 122 24456 89999999999999999875 45899999999999999999998
Q ss_pred CCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCc
Q 041297 228 NSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARS 307 (379)
Q Consensus 228 ~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~ 307 (379)
.... +.. ... .+.
T Consensus 148 ~~~~-------------------~~~--------------------------------~~v---------~~i------- 160 (494)
T 1vrd_A 148 RFEK-------------------NLS--------------------------------KKI---------KDL------- 160 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hhhc-------------------CCC--------------------------------CcH---------HHH-------
Confidence 7410 000 000 000
Q ss_pred CCCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 308 ARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 308 ~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
+.++..++++.+..+|.+++..+..|+.+++-|||++|.++|+|+...
T Consensus 161 ---------m~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~D 208 (494)
T 1vrd_A 161 ---------MTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKD 208 (494)
T ss_dssp ---------------------------------------------------------
T ss_pred ---------hCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHH
Confidence 011235789999999999999999999999999999999999998653
No 106
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=97.43 E-value=0.0002 Score=73.33 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=84.5
Q ss_pred ccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC--CCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCC
Q 041297 178 IDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE--EGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRP 255 (379)
Q Consensus 178 I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~--dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~p 255 (379)
+.++ ++.+..+++..+|+++|++. ..+.+||+|. +|+|+|-|+..||.... +...|
T Consensus 119 m~~d-~v~l~~~~tv~ea~~~m~~~--~~s~~pVvd~g~~~~lvGiVt~rDl~~~~-------------------~~~~~ 176 (511)
T 3usb_A 119 VISD-PFFLTPEHQVYDAEHLMGKY--RISGVPVVNNLDERKLVGIITNRDMRFIQ-------------------DYSIK 176 (511)
T ss_dssp SSSS-CCCBCTTSBHHHHHHHHHHH--CCSEEEEESCTTTCBEEEEEEHHHHTTCC-------------------CSSSB
T ss_pred cccC-CEEECCCCCHHHHHHHHHHc--CCcEEEEEecCCCCEEEEEEEehHhhhhc-------------------cCCCc
Confidence 3456 78899999999999999986 5599999998 89999999988886410 00000
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHH
Q 041297 256 LKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAV 335 (379)
Q Consensus 256 pe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAV 335 (379)
..+ . + .+.++++..+..+|.++
T Consensus 177 V~~-------------------v--------------------------------------M-~~~~~vtv~~~~~l~ea 198 (511)
T 3usb_A 177 ISD-------------------V--------------------------------------M-TKEQLITAPVGTTLSEA 198 (511)
T ss_dssp HHH-------------------H--------------------------------------C-CCCCCCCEETTCCHHHH
T ss_pred HHH-------------------h--------------------------------------c-ccCCCEEECCCCCHHHH
Confidence 000 0 0 11357899999999999
Q ss_pred HHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 336 IMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 336 MaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
+..+..|+.+++=|||++|.++|+|...-
T Consensus 199 l~~m~~~~i~~lpVVDe~g~l~GiIT~~D 227 (511)
T 3usb_A 199 EKILQKYKIEKLPLVDNNGVLQGLITIKD 227 (511)
T ss_dssp HHHHHHHTCSEEEEECTTSBEEEEEEHHH
T ss_pred HHHHHHcCCCEEEEEeCCCCEeeeccHHH
Confidence 99999999999999999999999998753
No 107
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=97.31 E-value=0.00046 Score=69.64 Aligned_cols=104 Identities=20% Similarity=0.256 Sum_probs=83.9
Q ss_pred ceEEeCCCCchhHHHHHHhc------CccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCC
Q 041297 96 IVRHLKPSASLLEAVDLLLG------GVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPN 169 (379)
Q Consensus 96 ll~~V~P~tsLLdAie~m~~------G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~ 169 (379)
-+..+.|++++-||++.|.+ +..++.|++...+- .=++|..|+++. -+.
T Consensus 164 ~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~l---------------vGiVt~~Dll~~----------~~~ 218 (473)
T 2zy9_A 164 EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRL---------------KGVLSLRDLIVA----------DPR 218 (473)
T ss_dssp CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBE---------------EEEEEHHHHHHS----------CTT
T ss_pred CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcE---------------EEEEEHHHHhcC----------CCC
Confidence 37889999999999999996 46788887653211 118999999863 145
Q ss_pred CcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 170 QPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 170 ~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
.+|.++ .+++ +..|+.+++..+|++.|++. +...+||||.+|+++|-|+..|+-.
T Consensus 219 ~~v~di--m~~~-~~~v~~~~~l~ea~~~m~~~--~~~~lpVVDe~g~lvGiIT~~Dil~ 273 (473)
T 2zy9_A 219 TRVAEI--MNPK-VVYVRTDTDQEEVARLMADY--DFTVLPVVDEEGRLVGIVTVDDVLD 273 (473)
T ss_dssp SBGGGT--SBSS-CCCEESSSBHHHHHHHHHHH--TCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred CcHHHH--hCCC-CeEEeCCCcHHHHHHHHHhc--CCcEEEEEcCCCEEEEEEehHhhHH
Confidence 667664 4577 99999999999999999986 5589999999999999999988854
No 108
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=97.27 E-value=0.00029 Score=73.39 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=80.4
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHh--cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhc-
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLL--GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIG- 162 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~--~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig- 162 (379)
|.++..+. .-+..++|++++-|+++.|. ++.+++.|+++..+-.+ .+|+.|+++.+.....
T Consensus 455 V~diM~p~-~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvG---------------iVt~~DL~~~l~~~~~~ 518 (632)
T 3org_A 455 AREIMHPI-EGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLG---------------AISRKEIVDRLQHVLED 518 (632)
T ss_dssp HHHHCBCT-TTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCC---------------EESHHHHTTTTTTC---
T ss_pred HHHHhhcC-CCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEE---------------EEEHHHHHHHHHHHhhh
Confidence 66766421 23567899999999999999 47888888775221111 4555555544432211
Q ss_pred ------------------------ccCC-C-----------------CCCcccccccccCCcEEEEecCCchhcHHHHHH
Q 041297 163 ------------------------LLNP-T-----------------PNQPINSHNIIDDAGILAIHYDDPAAFAIPLIA 200 (379)
Q Consensus 163 ------------------------~l~p-~-----------------p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~ 200 (379)
.+.+ . +..++.+ +.+++ +..|+.++++.+|+++|+
T Consensus 519 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~--iMt~~-pitV~~~~~l~ea~~~M~ 595 (632)
T 3org_A 519 VPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVV--PCDVS-PIVVTSYSLVRQLHFLFV 595 (632)
T ss_dssp ----------------------------------------------------CC--SCCCC-CCEEETTCBHHHHHHHHH
T ss_pred cccccccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccch--hhcCC-CceecCCCcHHHHHHHHH
Confidence 0000 0 0001222 35566 889999999999999999
Q ss_pred hccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 201 QSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 201 ~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
+. +.+.+||| ++|+++|=|+-.||-.
T Consensus 596 ~~--~i~~lpVv-e~G~lvGIVT~~Dll~ 621 (632)
T 3org_A 596 ML--MPSMIYVT-ERGKLVGIVEREDVAY 621 (632)
T ss_dssp HT--CCSEEEEE-ETTEEEEEEEGGGTEE
T ss_pred hc--CCCEEEEE-ECCEEEEEEehhhHHH
Confidence 86 55889999 8899999999999944
No 109
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=97.23 E-value=0.00052 Score=68.75 Aligned_cols=102 Identities=23% Similarity=0.292 Sum_probs=80.7
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEec--CCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILP--AGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN 173 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~--s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~ 173 (379)
+..++|++++-|+++.|. .+..++.|++ +.-+- .=++|..|++++. -+..+|.
T Consensus 100 ~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~l---------------vGivt~~Dl~~~~---------~~~~~v~ 155 (491)
T 1zfj_A 100 PFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKL---------------VGIITNRDMRFIS---------DYNAPIS 155 (491)
T ss_dssp CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBE---------------EEEEEHHHHHHCS---------CSSSBTT
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEE---------------EEEEEHHHHhhhc---------cCCCcHH
Confidence 566899999999999999 6888998876 32111 1289999998641 1455666
Q ss_pred ccccccC-CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 174 SHNIIDD-AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 174 sLG~I~~-~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
++ .++ + +..|+.+++..++++.|.+. +...+||||.+|+++|-|+..||
T Consensus 156 ~i--m~~~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVVd~~g~lvGivt~~Di 205 (491)
T 1zfj_A 156 EH--MTSEH-LVTAAVGTDLETAERILHEH--RIEKLPLVDNSGRLSGLITIKDI 205 (491)
T ss_dssp TS--CCCSC-CCCEETTCCHHHHHHHHHHT--TCSEEEEECTTSBEEEEEEHHHH
T ss_pred HH--cCCCC-CEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEEHHHH
Confidence 64 445 6 88999999999999999886 55899999999999999998776
No 110
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=97.19 E-value=0.00089 Score=62.50 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=43.5
Q ss_pred cccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 177 IIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 177 ~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
++++. .+.|..+++...+..+|++. ...-++|++ +|||||=|+-.||.+
T Consensus 194 ~md~s-P~tv~~~tsL~~v~~LF~~l--glr~l~V~~-~GrLVGIVTrkDl~k 242 (250)
T 2d4z_A 194 RIDQS-PFQLVEGTSLQKTHTLFSLL--GLDRAYVTS-MGKLVGVVALAEIQA 242 (250)
T ss_dssp CEECC-SCCBCTTCBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHHH
T ss_pred cccCC-CeEECCCCcHHHHHHHHHHh--CCeEEEEEE-CCEEEEEEEHHHHHH
Confidence 57888 99999999999999999986 558999996 799999999888865
No 111
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=97.19 E-value=7.8e-05 Score=76.07 Aligned_cols=105 Identities=12% Similarity=0.029 Sum_probs=76.5
Q ss_pred CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297 180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL 259 (379)
Q Consensus 180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l 259 (379)
++ ++.++.++++.+|+++|++. ..+.+||||.+|+|+|-|+..||..-. +.
T Consensus 97 ~d-~v~v~~~~tv~ea~~~m~~~--~~s~~PVvd~~~~lvGiVt~rDL~~~~-------------------~~------- 147 (496)
T 4fxs_A 97 TH-PVTVRPEQTIADVMELTHYH--GFAGFPVVTENNELVGIITGRDVRFVT-------------------DL------- 147 (496)
T ss_dssp BC-CCCBCSSSBHHHHHHHHTSS--CCCEEEEECSSSBEEEEEEHHHHTTCC-------------------CT-------
T ss_pred cC-ceEECCCCCHHHHHHHHHHc--CCcEEEEEccCCEEEEEEEHHHHhhcc-------------------cC-------
Confidence 56 78899999999999999885 558999999999999999998886200 00
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297 260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA 339 (379)
Q Consensus 260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA 339 (379)
. .+ - .|. +..+.++++..+..+|.+++..+
T Consensus 148 --------------------------~-~~------v-~di----------------M~p~~~~vtv~~~~~l~ea~~~m 177 (496)
T 4fxs_A 148 --------------------------T-KS------V-AAV----------------MTPKERLATVKEGATGAEVQEKM 177 (496)
T ss_dssp --------------------------T-SB------G-GGT----------------SEEGGGCCEEECC----CGGGTC
T ss_pred --------------------------C-Cc------H-HHH----------------hcCCCCCEEECCCCCHHHHHHHH
Confidence 0 00 0 000 11134578999999999999999
Q ss_pred HHcCCcEEEEeeCCCCcccceEee
Q 041297 340 LARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 340 laHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
..||.+++=|||++|.++|+|.+.
T Consensus 178 ~~~~i~~lpVVDe~G~l~GiIT~~ 201 (496)
T 4fxs_A 178 HKARVEKILVVNDEFQLKGMITAK 201 (496)
T ss_dssp C---CCCEEEECTTSBCCEEECCC
T ss_pred HHcCCCEEEEEcCCCCEEEeehHh
Confidence 999999999999999999999875
No 112
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=97.12 E-value=6.9e-05 Score=76.26 Aligned_cols=104 Identities=10% Similarity=0.075 Sum_probs=0.0
Q ss_pred CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297 180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL 259 (379)
Q Consensus 180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l 259 (379)
++ +..++.+++..+|+++|++. ..+.+|||| +|+|+|-|+..||+... +..
T Consensus 96 ~~-~v~v~~~~tv~ea~~~m~~~--~~s~~pVvd-~g~lvGIVt~rDl~~~~-------------------~~~------ 146 (490)
T 4avf_A 96 RD-PVTVTPSTKIIELLQMAREY--GFSGFPVVE-QGELVGIVTGRDLRVKP-------------------NAG------ 146 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cC-ceEeCCCCcHHHHHHHHHHh--CCCEEEEEE-CCEEEEEEEhHHhhhcc-------------------ccC------
Confidence 55 78999999999999999885 458999999 89999999999996210 000
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297 260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA 339 (379)
Q Consensus 260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA 339 (379)
.+ - .|. +..+..+++..+..+|.+++..+
T Consensus 147 ----------------------------~~------V-~~v----------------Mtp~~~~vtv~~~~~l~ea~~~m 175 (490)
T 4avf_A 147 ----------------------------DT------V-AAI----------------MTPKDKLVTAREGTPLEEMKAKL 175 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------Cc------H-HHH----------------hccCCCCEEECCCCcHHHHHHHH
Confidence 00 0 000 01123578999999999999999
Q ss_pred HHcCCcEEEEeeCCCCcccceEee
Q 041297 340 LARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 340 laHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
..|+.+++=|||++|.++|+|.+.
T Consensus 176 ~~~~i~~lpVVDe~g~lvGiIT~~ 199 (490)
T 4avf_A 176 YENRIEKMLVVDENFYLRGLVTFR 199 (490)
T ss_dssp ------------------------
T ss_pred HHcCCCEEEEEcCCCcEEEEEehH
Confidence 999999999999999999999875
No 113
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=97.09 E-value=0.00012 Score=74.25 Aligned_cols=127 Identities=10% Similarity=0.014 Sum_probs=69.1
Q ss_pred eeHHHHHHHHHhhhcccCCCCCCcccccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC---CCcEEeeeCc
Q 041297 148 LTQEDLIRYFLNFIGLLNPTPNQPINSHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE---EGRLVGDISP 224 (379)
Q Consensus 148 LTQeDVvRFLl~~ig~l~p~p~~SI~sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~---dGkLIGeISa 224 (379)
.|.|++.+|+..- +++.+ +..++ +..+..+++..+|+++|.+. ..+.+||||. +|+++|-|+.
T Consensus 95 ~t~e~~~~~v~~v---------~~~~~--im~~~-~~~v~~~~tv~ea~~~m~~~--~~~~~pVvd~~~~~~~lvGiVt~ 160 (514)
T 1jcn_A 95 CTPEFQANEVRKV---------KNFEQ--GFITD-PVVLSPSHTVGDVLEAKMRH--GFSGIPITETGTMGSKLVGIVTS 160 (514)
T ss_dssp SCHHHHHHHHHHH---------HTCCT--TSCSS-CCCCCC-------------------CEESCC--------CCEECT
T ss_pred CCHHHHHHHHHhh---------hhhhh--ccccC-CEEECCCCCHHHHHHHHHhc--CCCEEEEEeCCCcCCEEEEEEEH
Confidence 3889998888532 12332 23355 77899999999999999875 4589999998 5899999999
Q ss_pred cccCCCcHHHHHHHHhcchhhhhhhhccCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCcccccccc
Q 041297 225 FSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGS 304 (379)
Q Consensus 225 ~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~ 304 (379)
.||..... .+.. .+. ++.
T Consensus 161 ~Dl~~~~~-----------------~~~~--------------------------------~~v---------~~v---- 178 (514)
T 1jcn_A 161 RDIDFLAE-----------------KDHT--------------------------------TLL---------SEV---- 178 (514)
T ss_dssp TTTC----------------------------------------------------------------------------
T ss_pred HHHHhhhh-----------------ccCC--------------------------------CCH---------HHH----
Confidence 99875210 0000 000 000
Q ss_pred CCcCCCCCCcccccCCccceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEe
Q 041297 305 ARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRI 362 (379)
Q Consensus 305 ~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~ 362 (379)
+.....+++.++..+|.+++..+..|+.+++-|||++|.++|+|+.
T Consensus 179 ------------m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~ 224 (514)
T 1jcn_A 179 ------------MTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIAR 224 (514)
T ss_dssp --------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----C
T ss_pred ------------hCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEH
Confidence 0112357899999999999999999999999999999999999984
No 114
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=97.09 E-value=0.00076 Score=68.47 Aligned_cols=111 Identities=17% Similarity=0.109 Sum_probs=82.7
Q ss_pred cccccCcc-ccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeeccc--------
Q 041297 15 DEIALGQF-IHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLCP-------- 85 (379)
Q Consensus 15 ~~~~~~~~-~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la~-------- 85 (379)
+-+++... .|+.+|++.+.+++...+||-+.+ ..+++|+|+.-||+-++..
T Consensus 393 ~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~--------------------~g~lvGiVt~~Dll~~l~~~~~~~~~~ 452 (527)
T 3pc3_A 393 APPVILKSDATVGEAIALMKKHRVDQLPVVDQD--------------------DGSVLGVVGQETLITQIVSMNRQQSDP 452 (527)
T ss_dssp CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT--------------------TCCEEEEEEHHHHHHHHHHHCCCTTSB
T ss_pred CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC--------------------CCEEEEEEEHHHHHHHHHhccCcCCCc
Confidence 45667778 999999999999999999998721 2469999999999866542
Q ss_pred ccccccCCCCceEEeCCCCchhHHHHHHhcCccEEEEecCCcccCCCCCCcccccCCcce-EEeeHHHHHHHHHhhh
Q 041297 86 CFCSFAKDSGIVRHLKPSASLLEAVDLLLGGVQNLVILPAGIKLQPKPSLKSTFHNDSEY-CWLTQEDLIRYFLNFI 161 (379)
Q Consensus 86 VS~li~~~~gll~~V~P~tsLLdAie~m~~G~~rllVi~s~~k~~~~~s~~~~~~~~~~y-C~LTQeDVvRFLl~~i 161 (379)
|+++..+ .+..|+|+++|.|++++|.+.- -++|+++.-+. ..++ =++|++||++||.+..
T Consensus 453 V~~im~~---~~~~v~~~~~l~~a~~~m~~~~-~~pVVd~~~~~------------~g~lvGIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 453 AIKALNK---RVIRLNESEILGKLARVLEVDP-SVLILGKNPAG------------KVELKALATKLDVTTFIAAGK 513 (527)
T ss_dssp GGGGEET---TCCEEETTSBHHHHHHHHTTCS-EEEEEEECSSS------------CEEEEEEEEHHHHHHHHHTCC
T ss_pred HHHHhcC---CCeEECCCCcHHHHHHHHhhCC-EEEEEeCCccc------------CCeEEEEEEHHHHHHHHHhcc
Confidence 6666643 3678999999999999997432 24556542100 0112 2999999999998865
No 115
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=96.88 E-value=0.0087 Score=61.26 Aligned_cols=110 Identities=14% Similarity=0.023 Sum_probs=86.5
Q ss_pred ccccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecc---cccccc
Q 041297 14 CDEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC---PCFCSF 90 (379)
Q Consensus 14 ~~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la---~VS~li 90 (379)
-|-+++....|+++|++.+.+++...+||.+.. . ..+++|+|+.-|+.-.-- .|+++.
T Consensus 121 ~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~------------------~~~lvGiVt~rDl~~~~~~~~~V~~vM 181 (511)
T 3usb_A 121 SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-D------------------ERKLVGIITNRDMRFIQDYSIKISDVM 181 (511)
T ss_dssp SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-T------------------TCBEEEEEEHHHHTTCCCSSSBHHHHC
T ss_pred cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-C------------------CCEEEEEEEehHhhhhccCCCcHHHhc
Confidence 366789999999999999999999999998731 0 247999999999863111 177776
Q ss_pred cCCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHh
Q 041297 91 AKDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN 159 (379)
Q Consensus 91 ~~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~ 159 (379)
-+ ..+..+.+++++.|+++.|. .+++.++|++...+- .=.+|.+||++.+..
T Consensus 182 ~~--~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l---------------~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 182 TK--EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVL---------------QGLITIKDIEKVIEF 234 (511)
T ss_dssp CC--CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBE---------------EEEEEHHHHHHHHHC
T ss_pred cc--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCE---------------eeeccHHHHHHhhhc
Confidence 53 24678999999999999999 699999998753321 118999999999865
No 116
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=96.86 E-value=0.00016 Score=73.50 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCC--cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG--IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPIN 173 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~--~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~ 173 (379)
+..|+|++++-||+++|. +|..++.|+++. ..+ .. =++|..|+.+. ......+|.
T Consensus 107 ~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~--------lv------GiVt~~Dl~~~--------~~~~~~~V~ 164 (503)
T 1me8_A 107 DSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGV--------LL------GLVTQRDYPID--------LTQTETKVS 164 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCe--------EE------EEEEHHHHHhh--------hccccCcHH
Confidence 567999999999999999 688888887653 111 00 17888888753 112355666
Q ss_pred ccccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 174 SHNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 174 sLG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
++=--+++ +..|+.+++..+|+++|++. +...+||||.+|+++|=|+..||..
T Consensus 165 diM~~~~~-~~tv~~~~sl~ea~~~m~~~--~i~~lpVVDe~g~lvGiIT~~Dil~ 217 (503)
T 1me8_A 165 DMMTPFSK-LVTAHQDTKLSEANKIIWEK--KLNALPIIDDDQHLRYIVFRKDYDR 217 (503)
T ss_dssp --------------------------------------------------------
T ss_pred HHhCCCCC-CEEEcCCCcHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEecHHHH
Confidence 65322234 88999999999999999886 5589999999999999999988853
No 117
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=96.76 E-value=0.0011 Score=67.60 Aligned_cols=105 Identities=11% Similarity=0.221 Sum_probs=72.7
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|++++-|++++|. .+..++.|+++.-+- .=.+|..|+. |..-...+|.++
T Consensus 99 ~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~l---------------vGiVt~rDL~---------~~~~~~~~v~di 154 (496)
T 4fxs_A 99 PVTVRPEQTIADVMELTHYHGFAGFPVVTENNEL---------------VGIITGRDVR---------FVTDLTKSVAAV 154 (496)
T ss_dssp CCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBE---------------EEEEEHHHHT---------TCCCTTSBGGGT
T ss_pred ceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEE---------------EEEEEHHHHh---------hcccCCCcHHHH
Confidence 457899999999999999 588888887753211 1189999985 223345566664
Q ss_pred cccc-CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 176 NIID-DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 176 G~I~-~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
.+ ++++..++.+++..+|+++|++. +...+||||.+|+|+|-|+..|+-.
T Consensus 155 --M~p~~~~vtv~~~~~l~ea~~~m~~~--~i~~lpVVDe~G~l~GiIT~~DIl~ 205 (496)
T 4fxs_A 155 --MTPKERLATVKEGATGAEVQEKMHKA--RVEKILVVNDEFQLKGMITAKDFHK 205 (496)
T ss_dssp --SEEGGGCCEEECC----CGGGTCC-----CCCEEEECTTSBCCEEECCC----
T ss_pred --hcCCCCCEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCCEEEeehHhHHHH
Confidence 34 22388999999999999999886 5588999999999999999998843
No 118
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=96.60 E-value=0.00034 Score=70.36 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=0.6
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..|.|++++-||++.|. ++...+.|++...+-.+ ++|..|+.+. . -...++.++
T Consensus 105 ~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvG---------------ivt~~Dl~~~-~--------~~~~~v~~i 160 (494)
T 1vrd_A 105 PITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVG---------------LLTNRDVRFE-K--------NLSKKIKDL 160 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEE---------------EEEHHHHHhh-c--------CCCCcHHHH
Confidence 677999999999999999 57778888764322111 7888888751 1 124455543
Q ss_pred ccccC--CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCcccc
Q 041297 176 NIIDD--AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSL 227 (379)
Q Consensus 176 G~I~~--~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L 227 (379)
.++ + +..|+.+++..+|++.|.+. +...+||||.+|+++|-|+..||
T Consensus 161 --m~~~~~-~~~v~~~~~l~ea~~~m~~~--~~~~lpVVd~~g~lvGiIt~~Dl 209 (494)
T 1vrd_A 161 --MTPREK-LIVAPPDISLEKAKEILHQH--RIEKLPLVSKDNKLVGLITIKDI 209 (494)
T ss_dssp -----------------------------------------------------C
T ss_pred --hCCCCC-CeEECCCCCHHHHHHHHHHc--CCcEEEEEcCCCeEEEEEEHHHH
Confidence 344 6 89999999999999999886 45889999999999999997766
No 119
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=96.37 E-value=0.00055 Score=69.39 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=52.6
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCC---cccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCcc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAG---IKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPI 172 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~---~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI 172 (379)
...+.|++++-||+++|. .+.+.++|+++. .+-.+ ++|..|+.+.. . .....++
T Consensus 118 ~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvG---------------iVt~~Dl~~~~-~------~~~~~~v 175 (514)
T 1jcn_A 118 PVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVG---------------IVTSRDIDFLA-E------KDHTTLL 175 (514)
T ss_dssp CCCCCC-----------------CEESCC--------CC---------------EECTTTTC------------------
T ss_pred CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEE---------------EEEHHHHHhhh-h------ccCCCCH
Confidence 457899999999999999 588888887652 11111 78888876421 1 0123445
Q ss_pred cccccccC--CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 173 NSHNIIDD--AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 173 ~sLG~I~~--~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
.++ .++ + +..|+.+++..+|+++|.+. ....+||||.+|+++|-|+-.||-
T Consensus 176 ~~v--m~~~~~-~~tv~~~~~l~ea~~~m~~~--~~~~lpVVd~~g~lvGiIt~~Dll 228 (514)
T 1jcn_A 176 SEV--MTPRIE-LVVAPAGVTLKEANEILQRS--KKGKLPIVNDCDELVAIIARTDLK 228 (514)
T ss_dssp -------CCBC-CCCEETTCCSTTTTTHHHHH--TCSCCCEESSSSCCC----CCCCS
T ss_pred HHH--hCCCCC-CeEECCCCCHHHHHHHHHHc--CCCcccEECCCCeEEEEEEHHHHH
Confidence 543 344 6 89999999999999999886 447899999999999999977763
No 120
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=96.26 E-value=0.00087 Score=50.99 Aligned_cols=43 Identities=9% Similarity=0.264 Sum_probs=38.5
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccC
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLN 228 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~ 228 (379)
+..|.+++++.+|+++|++. +..++||+| +|+++|=|+-.||.
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~--~i~~~~V~d-~~~lvGIvT~~Di~ 44 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRN--KAGSAVVME-GDEILGVVTERDIL 44 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHT--TCSEEEEEE-TTEEEEEEEHHHHH
T ss_pred CEEECCCCcHHHHHHHHHHc--CCCEEEEEE-CCEEEEEEEHHHHH
Confidence 67899999999999999886 568999998 68999999999984
No 121
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=96.03 E-value=0.0059 Score=43.98 Aligned_cols=44 Identities=9% Similarity=0.262 Sum_probs=39.1
Q ss_pred EEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 183 ILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 183 v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
+..++.+++..+|++.|++. +.+.+||+|. |+++|-|+..||..
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~--~~~~~pV~d~-~~l~Givt~~dl~~ 45 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRN--KAGSAVVMEG-DEILGVVTERDILD 45 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHT--TCSEEEEEET-TEEEEEEEHHHHHH
T ss_pred CeEECCCCcHHHHHHHHHHc--CCCEEEEEEC-CEEEEEEEHHHHHH
Confidence 67899999999999999885 5589999997 99999999888754
No 122
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=95.96 E-value=0.0012 Score=66.66 Aligned_cols=102 Identities=18% Similarity=0.287 Sum_probs=0.0
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|++++-|+++.|. .|..++.|++. .+. . =++|..|+++ + +..++.++
T Consensus 103 ~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~l--------v------Givt~~Dl~~---~--------~~~~v~~i 155 (486)
T 2cu0_A 103 VITIAPDETVDFALFLMEKHGIDGLPVVED--EKV--------V------GIITKKDIAA---R--------EGKLVKEL 155 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEE--------E------EEEEHHHhcc---C--------CCCCHHHH
Confidence 567889999999999999 57778887765 220 0 1788888764 1 34556554
Q ss_pred ccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCC
Q 041297 176 NIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSC 230 (379)
Q Consensus 176 G~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~C 230 (379)
.+++ +..|+.+++..+|++.|++. +...+||||.+|+++|-|+..||...
T Consensus 156 --m~~~-~~~v~~~~~l~eal~~m~~~--~~~~lpVVde~g~lvGiiT~~Dil~~ 205 (486)
T 2cu0_A 156 --MTKE-VITVPESIEVEEALKIMIEN--RIDRLPVVDERGKLVGLITMSDLVAR 205 (486)
T ss_dssp -------------------------------------------------------
T ss_pred --ccCC-CeEECCcCcHHHHHHHHHHc--CCCEEEEEecCCeEEEEEEHHHHHHh
Confidence 4556 88999999999999999875 45789999999999999999998654
No 123
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=95.91 E-value=0.0087 Score=45.37 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=36.8
Q ss_pred cceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEe
Q 041297 322 EAIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRI 362 (379)
Q Consensus 322 ~~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~ 362 (379)
+++++.|..|+.++...|..|+++++=|+| +|.++|+|+-
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~ 40 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTE 40 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEH
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEH
Confidence 378999999999999999999999999998 5789999984
No 124
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=95.87 E-value=0.0014 Score=66.77 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred eEEeCCCCchhHHHHHHh-cCccEEEEecCCcccCCCCCCcccccCCcceEEeeHHHHHHHHHhhhcccCCCCCCccccc
Q 041297 97 VRHLKPSASLLEAVDLLL-GGVQNLVILPAGIKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNFIGLLNPTPNQPINSH 175 (379)
Q Consensus 97 l~~V~P~tsLLdAie~m~-~G~~rllVi~s~~k~~~~~s~~~~~~~~~~yC~LTQeDVvRFLl~~ig~l~p~p~~SI~sL 175 (379)
+..++|++++-||+++|. +|..++.|+++ -+-.+ ++|..|+ +|.. -...+|.++
T Consensus 98 ~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~-g~lvG---------------IVt~rDl-~~~~--------~~~~~V~~v 152 (490)
T 4avf_A 98 PVTVTPSTKIIELLQMAREYGFSGFPVVEQ-GELVG---------------IVTGRDL-RVKP--------NAGDTVAAI 152 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEeCCCCcHHHHHHHHHHhCCCEEEEEEC-CEEEE---------------EEEhHHh-hhcc--------ccCCcHHHH
Confidence 468899999999999999 58888888772 11111 7788887 3322 123445543
Q ss_pred cccc-C-CcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCC
Q 041297 176 NIID-D-AGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNS 229 (379)
Q Consensus 176 G~I~-~-~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~ 229 (379)
.+ + + +..|+.+++..+|+++|++. +...+||||.+|+++|-|+..|+..
T Consensus 153 --Mtp~~~-~vtv~~~~~l~ea~~~m~~~--~i~~lpVVDe~g~lvGiIT~~Dil~ 203 (490)
T 4avf_A 153 --MTPKDK-LVTAREGTPLEEMKAKLYEN--RIEKMLVVDENFYLRGLVTFRDIEK 203 (490)
T ss_dssp --------------------------------------------------------
T ss_pred --hccCCC-CEEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEehHHhhh
Confidence 33 2 5 89999999999999999986 5588999999999999999998854
No 125
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=95.77 E-value=0.0016 Score=65.71 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCcEEEEecCCchhcHHHHHHhccccCceeEEEcCCCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhccCCChhhH
Q 041297 180 DAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDEEGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMDCGRPLKDL 259 (379)
Q Consensus 180 ~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd~~~ppe~l 259 (379)
.+ ++.++.+++..+++++|++. ..+.+||+|. |+++|-|+..||.. +. ...+.
T Consensus 101 ~~-~~~v~~~~tv~ea~~~~~~~--~~~~~pVvd~-~~lvGivt~~Dl~~-~~-------~~~v~--------------- 153 (486)
T 2cu0_A 101 ED-VITIAPDETVDFALFLMEKH--GIDGLPVVED-EKVVGIITKKDIAA-RE-------GKLVK--------------- 153 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cC-ceEECCCCCHHHHHHHHHHc--CCcEEEEEEC-CEEEEEEEHHHhcc-CC-------CCCHH---------------
Confidence 56 89999999999999999876 4589999998 99999999998863 10 00000
Q ss_pred HHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCcHHHHHHHH
Q 041297 260 VRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSSLMAVIMQA 339 (379)
Q Consensus 260 ~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SSLvAVMaQA 339 (379)
+. -+.++++..+..+|.+++..+
T Consensus 154 ---------------------------------------~i------------------m~~~~~~v~~~~~l~eal~~m 176 (486)
T 2cu0_A 154 ---------------------------------------EL------------------MTKEVITVPESIEVEEALKIM 176 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------HH------------------ccCCCeEECCcCcHHHHHHHH
Confidence 00 012467889999999999999
Q ss_pred HHcCCcEEEEeeCCCCcccceEeeh
Q 041297 340 LARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 340 laHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
..|+.+++-|||++|.++|+|+.+-
T Consensus 177 ~~~~~~~lpVVde~g~lvGiiT~~D 201 (486)
T 2cu0_A 177 IENRIDRLPVVDERGKLVGLITMSD 201 (486)
T ss_dssp -------------------------
T ss_pred HHcCCCEEEEEecCCeEEEEEEHHH
Confidence 9999999999999999999998753
No 126
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=95.75 E-value=0.012 Score=42.30 Aligned_cols=40 Identities=15% Similarity=0.065 Sum_probs=37.6
Q ss_pred ceeecCCCcHHHHHHHHHHcCCcEEEEeeCCCCcccceEee
Q 041297 323 AIVCYPWSSLMAVIMQALARRDRLRSMAKAENPNFCPVRIQ 363 (379)
Q Consensus 323 ~vtC~p~SSLvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~ 363 (379)
++++++..|+.+++..+..|+.+++-|+|+ |.++|+|+..
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt~~ 41 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTER 41 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHH
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHH
Confidence 688999999999999999999999999998 9999999864
No 127
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=94.84 E-value=0.0052 Score=64.24 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=0.4
Q ss_pred cccccCCcEEEEecCCchhcHHHHHHhccccCceeEEEcC---CCcEEeeeCccccCCCcHHHHHHHHhcchhhhhhhhc
Q 041297 175 HNIIDDAGILAIHYDDPAAFAIPLIAQSHIKQTSVAIVDE---EGRLVGDISPFSLNSCDETVAAAIATLLAGDLMAYMD 251 (379)
Q Consensus 175 LG~I~~~~v~aV~~~~~A~~Ai~lm~~a~~~~tAVAVVd~---dGkLIGeISa~~L~~CDet~a~A~atLSAgdf~a~vd 251 (379)
-|+|... +.+.++.++.+|+++|++- ..+++||||. +|||+|=++-.|++.-|.. ..+.|+|
T Consensus 142 ~g~i~dP--vtl~P~~Tv~da~~l~~~~--~isgvpVvd~g~~~~kLvGIvT~RD~rf~d~~-------~~V~evM---- 206 (556)
T 4af0_A 142 NGFITDP--LCLGPDATVGDVLEIKAKF--GFCGVPITETGEPDSKLLGIVTGRDVQFQDAE-------TPIKSVM---- 206 (556)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cCccCCC--eEcCCCCCHHHHHHHHHHh--CCCccccccccCcCCEEEEEEecccccccccc-------eEhhhhc----
Confidence 4666544 7899999999999999886 4599999997 7899999999998763211 0011111
Q ss_pred cCCChhhHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCCCccccccccCCcCCCCCCcccccCCccceeecCCCc
Q 041297 252 CGRPLKDLVRLVKQRLDEKNMVGLLELMEDDLEISSGSCSNSSSSDEESSTGSARSARSGGYSARVVHRSEAIVCYPWSS 331 (379)
Q Consensus 252 ~~~ppe~l~~~v~~~l~~k~l~~~~~l~~~~~~~ss~~~ssssssDee~~~g~~~~~r~~~~S~~~~~~~~~vtC~p~SS 331 (379)
+.+++|-....+
T Consensus 207 --------------------------------------------------------------------T~~lvt~~~~~~ 218 (556)
T 4af0_A 207 --------------------------------------------------------------------TTEVVTGSSPIT 218 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------ccceEEecCCCC
Confidence 124677777788
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCcccceEeeh
Q 041297 332 LMAVIMQALARRDRLRSMAKAENPNFCPVRIQA 364 (379)
Q Consensus 332 LvAVMaQAlaHRV~~vWVvd~e~~l~~~v~~~~ 364 (379)
|.++..-+-.||...+=|||++|.|+|+|.++-
T Consensus 219 leeA~~iL~~~kieklpVVd~~g~LvGlIT~kD 251 (556)
T 4af0_A 219 LEKANSLLRETKKGKLPIVDSNGHLVSLVARSD 251 (556)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHccccceeEEccCCcEEEEEEech
Confidence 889999999999999999999999999998753
No 128
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=87.70 E-value=0.1 Score=54.61 Aligned_cols=90 Identities=19% Similarity=0.124 Sum_probs=0.0
Q ss_pred cccccCccccHHHHHHHHHhcCCceeeeecCCCchhhhhhhcccccccccCCCCeeeEeeeccceeeecc---ccccccc
Q 041297 15 DEIALGQFIHRCHALLALKRLNESYINIWSSDHSARKRKAAAANIDDHEDSAGCSCIGKVCMVDIITFLC---PCFCSFA 91 (379)
Q Consensus 15 ~~~~~~~~~tv~dAl~aL~~s~~~av~Vw~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~V~mlDIv~~la---~VS~li~ 91 (379)
|-|++.-..||+||++.+.+.+.+.+||-.- +. ...+.+|+|+.-|+- |-- +|+++.-
T Consensus 147 dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~-g~-----------------~~~kLvGIvT~RD~r-f~d~~~~V~evMT 207 (556)
T 4af0_A 147 DPLCLGPDATVGDVLEIKAKFGFCGVPITET-GE-----------------PDSKLLGIVTGRDVQ-FQDAETPIKSVMT 207 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEcCCCCCHHHHHHHHHHhCCCccccccc-cC-----------------cCCEEEEEEeccccc-ccccceEhhhhcc
Confidence 6789999999999999999999999999762 11 146799999999964 321 1777765
Q ss_pred CCCCceEEeCCCCchhHHHHHHh-cCccEEEEecCC
Q 041297 92 KDSGIVRHLKPSASLLEAVDLLL-GGVQNLVILPAG 126 (379)
Q Consensus 92 ~~~gll~~V~P~tsLLdAie~m~-~G~~rllVi~s~ 126 (379)
+ -|.++..++++-||.++|. ..+..|+|++..
T Consensus 208 ~---~lvt~~~~~~leeA~~iL~~~kieklpVVd~~ 240 (556)
T 4af0_A 208 T---EVVTGSSPITLEKANSLLRETKKGKLPIVDSN 240 (556)
T ss_dssp ------------------------------------
T ss_pred c---ceEEecCCCCHHHHHHHHHHccccceeEEccC
Confidence 3 2889999999999999999 588888887754
Done!