BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041298
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 9/138 (6%)
Query: 18 LIVPARPTPRELKQLSDIDDQESFRFHIPVIFLYKNNSASSPPVLKEKDPVKVIKEAISE 77
++ PA+ TP S++D FH P ++ Y+ +S+ KV+K+A+S
Sbjct: 15 MVRPAQETPGRNLWNSNVDLVVP-NFHTPSVYFYRPTGSSN------FFDAKVLKDALSR 67
Query: 78 ALVYYYPFAGRLIEGPNRKLMVDCNGEGILFLEAEANFKLEQLGGAIQPPCPYLEQLTYN 137
ALV +YP AGRL + ++ ++CNGEG+LF+EAE++ ++ G P L +L
Sbjct: 68 ALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDF--APTLELRRLIPA 125
Query: 138 VPGSEGILGCPLLLIQVS 155
V S+GI LL++QV+
Sbjct: 126 VDYSQGISSYALLVLQVT 143
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 9/138 (6%)
Query: 18 LIVPARPTPRELKQLSDIDDQESFRFHIPVIFLYKNNSASSPPVLKEKDPVKVIKEAISE 77
++ PA+ TP S++D FH P ++ Y+ +S+ KV+K+A+S
Sbjct: 12 MVRPAQETPGRNLWNSNVDLVVP-NFHTPSVYFYRPTGSSN------FFDAKVLKDALSR 64
Query: 78 ALVYYYPFAGRLIEGPNRKLMVDCNGEGILFLEAEANFKLEQLGGAIQPPCPYLEQLTYN 137
ALV +YP AGRL + ++ ++CNGEG+LF+EAE++ ++ G P L +L
Sbjct: 65 ALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDF--APTLELRRLIPA 122
Query: 138 VPGSEGILGCPLLLIQVS 155
V S+GI LL++QV+
Sbjct: 123 VDYSQGISSYALLVLQVT 140
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 9/138 (6%)
Query: 18 LIVPARPTPRELKQLSDIDDQESFRFHIPVIFLYKNNSASSPPVLKEKDPVKVIKEAISE 77
++ PA+ TP S++D FH P ++ Y+ +S+ KV+K+A+S
Sbjct: 15 MVRPAQETPGRNLWNSNVDLVVP-NFHTPSVYFYRPTGSSN------FFDAKVLKDALSR 67
Query: 78 ALVYYYPFAGRLIEGPNRKLMVDCNGEGILFLEAEANFKLEQLGGAIQPPCPYLEQLTYN 137
ALV +YP AGRL + ++ ++CNGEG+LF+EAE++ ++ G P L +L
Sbjct: 68 ALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDF--APTLELRRLIPA 125
Query: 138 VPGSEGILGCPLLLIQVS 155
V S+GI LL++QV+
Sbjct: 126 VDYSQGISSYALLVLQVT 143
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 68/130 (52%), Gaps = 25/130 (19%)
Query: 1 MAPKFSLVLSVTRQAPELIVPARPTPRELK--QLSDIDDQESFRFHIPVIFLYKNNSASS 58
MAP+ V + ELI+P+ PTP+ LK ++S +D Q HIP I Y N
Sbjct: 1 MAPQMEKV------SEELILPSSPTPQSLKCYKISHLD-QLLLTCHIPFILFYPN----- 48
Query: 59 PPVLKEKDPVKV---IKEAISEALVYYYPFAGRLIEGPNRKLMVDCNGEGILFLEAEANF 115
P+ DP + +K+++S+ L ++YP AGR+ N VDCN G+ F+EA
Sbjct: 49 -PLDSNLDPAQTSQHLKQSLSKVLTHFYPLAGRI----NVNSSVDCNDSGVPFVEARVQA 103
Query: 116 KLEQLGGAIQ 125
+L Q AIQ
Sbjct: 104 QLSQ---AIQ 110
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 71 IKEAISEALVYYYPFAGRLIE--GPNRK-LMVDCNGEGILFLEAEANFKLEQLGGAIQPP 127
IK ++S L ++YPF G+L+ P +K + G+ + AE N L +L G
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRN 124
Query: 128 CPYLEQLTYNVPGSEGILGC---PLLLIQVS 155
C L + S + C PL +QV+
Sbjct: 125 CDKFYDLVPILGESTRLSDCIKIPLFSVQVT 155
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 71 IKEAISEALVYYYPFAGRLIE--GPNRK-LMVDCNGEGILFLEAEANFKLEQLGGAIQPP 127
IK ++S L ++YPF G+L+ P +K + G+ + AE N L +L G
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRN 124
Query: 128 CPYLEQLTYNVPGSEGILGC---PLLLIQVS 155
C L + S + C PL +QV+
Sbjct: 125 CDKFYDLVPILGESTRLSDCIKIPLFSVQVT 155
>pdb|3EZO|A Chain A, Crystal Structure Of Acyl-Carrier-Protein S-
Malonyltransferase From Burkholderia Pseudomallei 1710b
Length = 318
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 49 FLYKNNSASSPPVLKEKDPVKVIKEAISEALVYYYPFAGRLI-EGPNRKLMVDCNGEGIL 107
F++ + S +L V V++E + EA G+LI +GP +L + N + ++
Sbjct: 13 FVFPGQGSQSVGMLNAFADVAVVRETLDEASDALGQDIGKLIADGPADELNLTTNTQPVM 72
Query: 108 FLEAEANFKLEQLGGAIQP 126
A A ++ Q G QP
Sbjct: 73 LTAAYACYRAWQQAGGAQP 91
>pdb|3DFY|A Chain A, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|B Chain B, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|C Chain C, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|D Chain D, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|E Chain E, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|F Chain F, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|G Chain G, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|H Chain H, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|I Chain I, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|J Chain J, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|K Chain K, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|L Chain L, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|M Chain M, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|N Chain N, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|O Chain O, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|P Chain P, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DEQ|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DER|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DES|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
Length = 345
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 10 SVTRQAPELIVPARPTPRELKQLSDIDDQESFRFHIPVIFLYKNNSASSPPVLK------ 63
+V ++ ++ V +P RE DI+ + RFH P ++ + V++
Sbjct: 204 AVYQKGIDIAVYEQPVRRE-----DIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEA 258
Query: 64 -EKDPVKVIKEAISEALVYYYPFAGRLIEGPNRKLMVDCNGEGILFLEAEANFKL 117
+ +K++K IS+AL + E KLM+ C GE L + +F L
Sbjct: 259 VDYVNIKLMKSGISDALAIV-----EIAESSGLKLMIGCMGESSLGINQSVHFAL 308
>pdb|1CEC|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 343
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 25 TPRELKQLSDIDDQ---ESFRFHIPVIFLYKNNSASSPPV 61
+P ELK L+DIDD +F F+ P F ++ S +
Sbjct: 178 SPDELKNLADIDDDYIVYNFHFYNPFFFTHQKAHWSESAM 217
>pdb|1CEN|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Complexed With Cellohexaose
pdb|1CEO|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Length = 343
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 25 TPRELKQLSDIDDQ---ESFRFHIPVIFLYKNNSASSPPV 61
+P ELK L+DIDD +F F+ P F ++ S +
Sbjct: 178 SPDELKNLADIDDDYIVYNFHFYNPFFFTHQKAHWSESAM 217
>pdb|4HHU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or280.
pdb|4HHU|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or280
Length = 170
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 2 APKFSLVLSVTRQAPELIVPARPTPREL-KQLSDIDDQESFRFHIPVIFLYKNNSASSPP 60
A KF+ ++ T L++ P ++ K+L+ ++ F+I V + + +
Sbjct: 27 ARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIXGSGSGVXV 86
Query: 61 VLKEKDPVKVIKEAISEALVYYYPFAG 87
++ E D ++ +++A+ E + FAG
Sbjct: 87 IVFEGDDLEALEKALKEXIRQARKFAG 113
>pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNY|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Post-Transfer Editing Substrate Analogue, Val-2aa
Length = 186
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 70 VIKEAISEALVYYYPFAGRLIEGPNRKLMVDCNGEGILFLE 110
++K E + PF G NR ++ D G G+LF E
Sbjct: 140 LLKTVDEEGKLLVEPFKGLYFREANRAILRDLRGRGLLFKE 180
>pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
pdb|1WK8|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
Length = 194
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 84 PFAGRLIEGPNRKLMVDCNGEGILFLE 110
PF G NR ++ D G G+LF E
Sbjct: 159 PFKGLYFREANRAILRDLRGRGLLFKE 185
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 26.2 bits (56), Expect = 8.1, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 70 VIKEAISEALVYYYPFAGRLIEGPNRKLMVDCNGEGILFLE 110
++K E + PF G NR ++ D G G+LF E
Sbjct: 339 LLKTVDEEGKLLVEPFKGLYFREANRAILRDLRGRGLLFKE 379
>pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1UDZ|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
Length = 182
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 70 VIKEAISEALVYYYPFAGRLIEGPNRKLMVDCNGEGILFLE 110
++K E + PF G NR ++ D G G LF E
Sbjct: 140 LLKTVDEEGKLLVEPFKGLYFREANRAILRDLRGRGFLFKE 180
>pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
pdb|1UE0|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
Length = 182
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 70 VIKEAISEALVYYYPFAGRLIEGPNRKLMVDCNGEGILFLE 110
++K E + PF G NR ++ D G G LF E
Sbjct: 140 LLKTVDEEGKLLVEPFKGLYFREANRAILRDLRGRGFLFKE 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,777,929
Number of Sequences: 62578
Number of extensions: 189045
Number of successful extensions: 342
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 22
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)