Query 041298
Match_columns 157
No_of_seqs 108 out of 1081
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 09:23:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041298.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041298hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2joza1 b.60.1.1 (A:2-127) Hyp 34.4 12 0.00089 23.4 2.4 28 78-105 78-105 (126)
2 d1f7la_ d.150.1.2 (A:) Holo-(a 28.0 42 0.0031 20.8 4.5 12 70-81 55-66 (118)
3 d1bvsa3 b.40.4.2 (A:1-63) DNA 23.5 19 0.0014 20.1 1.7 22 84-105 4-25 (63)
4 d1q9ja1 c.43.1.2 (A:1-175) Pol 22.5 73 0.0053 20.1 5.1 34 67-100 35-68 (175)
5 d1zq1c3 d.128.1.5 (C:5-276,C:4 20.1 37 0.0027 25.3 3.3 22 95-116 170-191 (321)
6 d1g2ra_ d.192.1.1 (A:) Hypothe 19.9 30 0.0022 20.9 2.3 22 88-109 22-47 (94)
7 d1s14a_ d.122.1.2 (A:) Topoiso 17.2 57 0.0042 21.8 3.5 41 65-108 8-50 (168)
8 d2vqei1 d.14.1.1 (I:2-128) Rib 16.7 34 0.0025 21.9 2.1 18 67-84 72-89 (127)
9 d1puee_ a.4.5.21 (E:) Transcri 15.6 24 0.0018 21.4 1.0 12 73-84 58-69 (88)
10 d1yo5c1 a.4.5.21 (C:247-334) S 15.1 30 0.0022 20.9 1.4 11 73-83 57-67 (88)
No 1
>d2joza1 b.60.1.1 (A:2-127) Hypothetical protein YxeF {Bacillus subtilis [TaxId: 1423]}
Probab=34.42 E-value=12 Score=23.44 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=23.6
Q ss_pred HhhhcccCceeeeecCCCcEEEEecCCC
Q 041298 78 ALVYYYPFAGRLIEGPNRKLMVDCNGEG 105 (157)
Q Consensus 78 ~L~~yyplAGRL~~~~~g~~~i~cn~~G 105 (157)
-|.+|||+-..|++.++|.+.-.-|++-
T Consensus 78 ylg~~~p~kstlkrg~n~tliw~~~g~~ 105 (126)
T d2joza1 78 YLGPYYPLKSTLKRGENGTLIWEQNGQR 105 (126)
T ss_dssp EESTTCSCEEEEEECSTTCEEEEETTEE
T ss_pred EcCCCcchhhHHhCCCCCcEEEEecCce
Confidence 5789999999999999888877777653
No 2
>d1f7la_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Bacillus subtilis [TaxId: 1423]}
Probab=27.96 E-value=42 Score=20.76 Aligned_cols=12 Identities=42% Similarity=0.338 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhh
Q 041298 70 VIKEAISEALVY 81 (157)
Q Consensus 70 ~Lk~sLs~~L~~ 81 (157)
..|+|+.++|..
T Consensus 55 AaKEA~~Kalg~ 66 (118)
T d1f7la_ 55 AAKEAFSKAFGT 66 (118)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHhccc
Confidence 579999999964
No 3
>d1bvsa3 b.40.4.2 (A:1-63) DNA helicase RuvA subunit, N-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=23.53 E-value=19 Score=20.11 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=17.4
Q ss_pred cCceeeeecCCCcEEEEecCCC
Q 041298 84 PFAGRLIEGPNRKLMVDCNGEG 105 (157)
Q Consensus 84 plAGRL~~~~~g~~~i~cn~~G 105 (157)
-+.|++.....+.+.|+|||=|
T Consensus 4 ~i~G~i~~~~~~~ivi~v~GvG 25 (63)
T d1bvsa3 4 SVRGEVLEVALDHAVIEAAGIG 25 (63)
T ss_dssp EECEEEEEECSSCEEEEETTEE
T ss_pred EEEEEEEEECCCEEEEEECCEE
Confidence 3678998887788999998544
No 4
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.54 E-value=73 Score=20.10 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHhhhcccCceeeeecCCCcEEEE
Q 041298 67 PVKVIKEAISEALVYYYPFAGRLIEGPNRKLMVD 100 (157)
Q Consensus 67 ~~~~Lk~sLs~~L~~yyplAGRL~~~~~g~~~i~ 100 (157)
-.++|++|+..++..++-|-.+++.+++|.+...
T Consensus 35 d~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~~~~ 68 (175)
T d1q9ja1 35 DVDALSDAFDALLETHPVLASHLEQSSDGGWNLV 68 (175)
T ss_dssp CHHHHHHHHHHHHHHCGGGSEEEEECTTSSEEEE
T ss_pred CHHHHHHHHHHHHHhchhheEEEEEeCCeeEEEE
Confidence 3799999999999999999999988776655443
No 5
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]}
Probab=20.10 E-value=37 Score=25.35 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=16.9
Q ss_pred CcEEEEecCCCeEEEEEEeccC
Q 041298 95 RKLMVDCNGEGILFLEAEANFK 116 (157)
Q Consensus 95 g~~~i~cn~~Gv~fveA~~~~~ 116 (157)
+...++.|..|+.++|=.+.-+
T Consensus 170 ~~~lvD~NRaGvPLiEIVTePd 191 (321)
T d1zq1c3 170 KEVIYRLDRLGIPLIEISTTPD 191 (321)
T ss_dssp TEEEEESTTTTCEEEEEECCTT
T ss_pred CceEEeecccCcceEEEecccc
Confidence 3456788999999999987643
No 6
>d1g2ra_ d.192.1.1 (A:) Hypothetical cytosolic protein SP0554 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=19.87 E-value=30 Score=20.93 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=16.3
Q ss_pred eeeecCCCcEEEEec----CCCeEEE
Q 041298 88 RLIEGPNRKLMVDCN----GEGILFL 109 (157)
Q Consensus 88 RL~~~~~g~~~i~cn----~~Gv~fv 109 (157)
|++.+++|.+.+|.+ |.||++.
T Consensus 22 R~v~~~dg~v~~D~~~k~~GRGayl~ 47 (94)
T d1g2ra_ 22 RIVKNKEGQVFIDPTGKANGRGAYIK 47 (94)
T ss_dssp EEEECTTSCEEEETTSCCCSEEEEEE
T ss_pred EEEecCCCcEEEcCCCCCCCCEEEEC
Confidence 677778899999874 5577654
No 7
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=17.17 E-value=57 Score=21.76 Aligned_cols=41 Identities=27% Similarity=0.257 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHHhhhcccCceeeee--cCCCcEEEEecCCCeEE
Q 041298 65 KDPVKVIKEAISEALVYYYPFAGRLIE--GPNRKLMVDCNGEGILF 108 (157)
Q Consensus 65 ~~~~~~Lk~sLs~~L~~yyplAGRL~~--~~~g~~~i~cn~~Gv~f 108 (157)
+.+.+.|=.|.=++|+-| |.++.. .+||.+.|..||.|+++
T Consensus 8 Hlv~EivDNsiDEa~aG~---~~~I~V~l~~D~si~V~D~GRGIPv 50 (168)
T d1s14a_ 8 HLGQEVIDNSVDEALAGH---AKRVDVILHADQSLEVIDDGRGMPV 50 (168)
T ss_dssp HHHHHHHHHHHHHHHTTS---CSEEEEEECTTSCEEEEECSSCCCC
T ss_pred eEEeeeeecHHHHHHcCC---CCEEEEEEeCCCeEEEEEEecccce
Confidence 456677777888888766 667664 36899999999999984
No 8
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]}
Probab=16.73 E-value=34 Score=21.92 Aligned_cols=18 Identities=44% Similarity=0.667 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHhhhccc
Q 041298 67 PVKVIKEAISEALVYYYP 84 (157)
Q Consensus 67 ~~~~Lk~sLs~~L~~yyp 84 (157)
-..+++.++|++|+.|.|
T Consensus 72 Qa~Air~aIaRaL~~~~~ 89 (127)
T d2vqei1 72 QIDAIKLGIARALVQYNP 89 (127)
T ss_dssp HHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHCH
Confidence 578999999999999876
No 9
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.59 E-value=24 Score=21.37 Aligned_cols=12 Identities=33% Similarity=0.373 Sum_probs=10.2
Q ss_pred HHHHHHhhhccc
Q 041298 73 EAISEALVYYYP 84 (157)
Q Consensus 73 ~sLs~~L~~yyp 84 (157)
+.||++|.+||-
T Consensus 58 eklSRaLRyYY~ 69 (88)
T d1puee_ 58 EKMARALRNYGK 69 (88)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 469999999996
No 10
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.14 E-value=30 Score=20.88 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=10.2
Q ss_pred HHHHHHhhhcc
Q 041298 73 EAISEALVYYY 83 (157)
Q Consensus 73 ~sLs~~L~~yy 83 (157)
+.||++|.+||
T Consensus 57 eklSRALRyYY 67 (88)
T d1yo5c1 57 DKLSRSIRQYY 67 (88)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 77999999999
Done!