BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041300
(716 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 158/515 (30%), Positives = 224/515 (43%), Gaps = 77/515 (14%)
Query: 56 ISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGK 115
+SL +G + DF + L LDLS N F+G +P G+ + L ++L SN SG+
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 116 IPAEVGL-LTHLKVLSFQFNELDGSIPPEVCQLS-SIEELFLYSNHLNGS-LPPFLGNLS 172
+P + L + LKVL FNE G +P + LS S+ L L SN+ +G LP N
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 173 NIVR-LYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIP 231
N ++ LY+ NN +G I + N L L LSF N+LSG+IP
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF------------------NYLSGTIP 432
Query: 232 PSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRV 290
S G+ S L L L N G +P + LE I+ N G IP L NCT+L +
Sbjct: 433 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 492
Query: 291 RLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIP 350
L+ N LTG I + +G NL + LS N+F G I + G C L L+++ N G IP
Sbjct: 493 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 351 REIGNMSQLQALDLSLNHIVGE---------IPKEL-GKLNSLTKLILRG---NQLTGRL 397
+ Q+ ++ N I G+ + KE G N L +R N+L+ R
Sbjct: 553 AAMFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 398 PTEIGSLI-------------ELEYLDFSANKFNNSVPEXXXXXXXXXXXXXXXXQFXXX 444
P I S + + +LD S N + +P+
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI----------- 657
Query: 445 XXXXXXXXXXXSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLS 504
L+ HN G IP ++ L+ L L+LS N L G IP + L+
Sbjct: 658 -------------LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 505 IIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG 539
ID+S+N L GP+P F P N LCG
Sbjct: 705 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 156/564 (27%), Positives = 241/564 (42%), Gaps = 66/564 (11%)
Query: 50 AGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDS 109
G + ++++ +SG D S L LD+S N F IP +G+ + L ++ +
Sbjct: 174 CGELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG 229
Query: 110 NQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFL- 168
N+LSG + T LK+L+ N+ G IPP L S++ L L N G +P FL
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLS 287
Query: 169 GNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPL-SVGNLTNLKSLGL 221
G + L ++ N G++ G+ L L LS LP+ ++ + LK L L
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 347
Query: 222 MDNHLSGSIPPSFGN---SMLTWLTLSGNHFTGYLPHNICRG--GLLEAFIVSENHFQGT 276
N SG +P S N S+LT L LS N+F+G + N+C+ L+ + N F G
Sbjct: 348 SFNEFSGELPESLTNLSASLLT-LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 277 IPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLG 336
IP +L NC+ L+ + L+ N L+G I +LG L + L N GEI L
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
TL + N++TG IP + N + L + LS N + GEIPK +G+L +L L L N +G
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 397 LPTEIGSLIELEYLDFSANKFNNSVPEXXXXXXXXXXX---------------------- 434
+P E+G L +LD + N FN ++P
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 435 XXXXXQFXXXXXXXXXXXXXXSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIP 494
+F + + + ++GG + S+ L++S+N LSG IP
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 495 NCFEGM------------------------HGLSIIDISDNQLQGPVPNSTAFRNAPVEA 530
M GL+I+D+S N+L G +P + + E
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 531 LEGNKELCGGVKGMQPCKVFSSHK 554
N L G + M + F K
Sbjct: 707 DLSNNNLSGPIPEMGQFETFPPAK 730
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 161/583 (27%), Positives = 252/583 (43%), Gaps = 130/583 (22%)
Query: 3 EEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLR--- 59
E L+ +K L N LLP W SS +PC + G++C D +VT+I L
Sbjct: 9 REIHQLISFKDVLPDKN--LLPDW-------SSNKNPCTFDGVTCRDD-KVTSIDLSSKP 58
Query: 60 ------------------------NTGLSGTLRDFSFSSFPQLVHLDLSLNGFFG--TIP 93
N+ ++G++ F S+ L LDLS N G T
Sbjct: 59 LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTL 116
Query: 94 SQIGNLTKLSYISLDSNQLS--GKIPAEVGL--------------------------LTH 125
+ +G+ + L ++++ SN L GK+ + L
Sbjct: 117 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 176
Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
LK L+ N++ G + +V + ++E L + SN+ + +P FLG+ S + L I+ N LS
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 233
Query: 186 GSILTNIGNLKFLFELDLS---FL-PLSVGNLTNLKSLGLMDNHLSGSIPP--SFGNSML 239
G I L L++S F+ P+ L +L+ L L +N +G IP S L
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 240 TWLTLSGNHFTGYLP-------------------------HNICRGGLLEAFIVSENHFQ 274
T L LSGNHF G +P + + L+ +S N F
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 275 GTIPESLRNCT-SLIRVRLNGNNLTGNISEALGLYPNLTFIDL--SRNNFYGEISSNWGK 331
G +PESL N + SL+ + L+ NN +G I L P T +L N F G+I
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 332 CPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 391
C +L +L++S N ++G IP +G++S+L+ L L LN + GEIP+EL + +L LIL N
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 392 QLTGRLPTEIGSLIELEYLDFSANKFNNSVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXX 451
LTG +P+ + + L ++ S N+ +P+
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI------------------ 515
Query: 452 XXXXSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIP 494
L S+N F G IP ++ +SL L+L+ N +G IP
Sbjct: 516 ------LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 158/515 (30%), Positives = 224/515 (43%), Gaps = 77/515 (14%)
Query: 56 ISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGK 115
+SL +G + DF + L LDLS N F+G +P G+ + L ++L SN SG+
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 116 IPAEVGL-LTHLKVLSFQFNELDGSIPPEVCQLS-SIEELFLYSNHLNGS-LPPFLGNLS 172
+P + L + LKVL FNE G +P + LS S+ L L SN+ +G LP N
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 173 NIVR-LYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIP 231
N ++ LY+ NN +G I + N L L LSF N+LSG+IP
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF------------------NYLSGTIP 435
Query: 232 PSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRV 290
S G+ S L L L N G +P + LE I+ N G IP L NCT+L +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 291 RLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIP 350
L+ N LTG I + +G NL + LS N+F G I + G C L L+++ N G IP
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 351 REIGNMSQLQALDLSLNHIVGE---------IPKEL-GKLNSLTKLILRG---NQLTGRL 397
+ Q+ ++ N I G+ + KE G N L +R N+L+ R
Sbjct: 556 AAMFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 398 PTEIGSLI-------------ELEYLDFSANKFNNSVPEXXXXXXXXXXXXXXXXQFXXX 444
P I S + + +LD S N + +P+
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI----------- 660
Query: 445 XXXXXXXXXXXSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLS 504
L+ HN G IP ++ L+ L L+LS N L G IP + L+
Sbjct: 661 -------------LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 505 IIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCG 539
ID+S+N L GP+P F P N LCG
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 156/564 (27%), Positives = 241/564 (42%), Gaps = 66/564 (11%)
Query: 50 AGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDS 109
G + ++++ +SG D S L LD+S N F IP +G+ + L ++ +
Sbjct: 177 CGELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG 232
Query: 110 NQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFL- 168
N+LSG + T LK+L+ N+ G IPP L S++ L L N G +P FL
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLS 290
Query: 169 GNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF------LPL-SVGNLTNLKSLGL 221
G + L ++ N G++ G+ L L LS LP+ ++ + LK L L
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 222 MDNHLSGSIPPSFGN---SMLTWLTLSGNHFTGYLPHNICRG--GLLEAFIVSENHFQGT 276
N SG +P S N S+LT L LS N+F+G + N+C+ L+ + N F G
Sbjct: 351 SFNEFSGELPESLTNLSASLLT-LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 277 IPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLG 336
IP +L NC+ L+ + L+ N L+G I +LG L + L N GEI L
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR 396
TL + N++TG IP + N + L + LS N + GEIPK +G+L +L L L N +G
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 397 LPTEIGSLIELEYLDFSANKFNNSVPEXXXXXXXXXXX---------------------- 434
+P E+G L +LD + N FN ++P
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 435 XXXXXQFXXXXXXXXXXXXXXSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIP 494
+F + + + ++GG + S+ L++S+N LSG IP
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 495 NCFEGM------------------------HGLSIIDISDNQLQGPVPNSTAFRNAPVEA 530
M GL+I+D+S N+L G +P + + E
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 531 LEGNKELCGGVKGMQPCKVFSSHK 554
N L G + M + F K
Sbjct: 710 DLSNNNLSGPIPEMGQFETFPPAK 733
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 161/583 (27%), Positives = 252/583 (43%), Gaps = 130/583 (22%)
Query: 3 EEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLR--- 59
E L+ +K L N LLP W SS +PC + G++C D +VT+I L
Sbjct: 12 REIHQLISFKDVLPDKN--LLPDW-------SSNKNPCTFDGVTCRD-DKVTSIDLSSKP 61
Query: 60 ------------------------NTGLSGTLRDFSFSSFPQLVHLDLSLNGFFG--TIP 93
N+ ++G++ F S+ L LDLS N G T
Sbjct: 62 LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTL 119
Query: 94 SQIGNLTKLSYISLDSNQLS--GKIPAEVGL--------------------------LTH 125
+ +G+ + L ++++ SN L GK+ + L
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
LK L+ N++ G + +V + ++E L + SN+ + +P FLG+ S + L I+ N LS
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236
Query: 186 GSILTNIGNLKFLFELDLS---FL-PLSVGNLTNLKSLGLMDNHLSGSIPP--SFGNSML 239
G I L L++S F+ P+ L +L+ L L +N +G IP S L
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 240 TWLTLSGNHFTGYLP-------------------------HNICRGGLLEAFIVSENHFQ 274
T L LSGNHF G +P + + L+ +S N F
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 275 GTIPESLRNCT-SLIRVRLNGNNLTGNISEALGLYPNLTFIDL--SRNNFYGEISSNWGK 331
G +PESL N + SL+ + L+ NN +G I L P T +L N F G+I
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 332 CPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 391
C +L +L++S N ++G IP +G++S+L+ L L LN + GEIP+EL + +L LIL N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 392 QLTGRLPTEIGSLIELEYLDFSANKFNNSVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXX 451
LTG +P+ + + L ++ S N+ +P+
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI------------------ 518
Query: 452 XXXXSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIP 494
L S+N F G IP ++ +SL L+L+ N +G IP
Sbjct: 519 ------LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 128/291 (43%), Gaps = 24/291 (8%)
Query: 3 EEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCN---DAGRVTNISLR 59
++ ALL+ K L N + L SW +T+ ++ W G+ C+ RV N+ L
Sbjct: 6 QDKQALLQIKKDL--GNPTTLSSWL-PTTDCCNR----TWLGVLCDTDTQTYRVNNLDLS 58
Query: 60 NTGLSGTLR-DFSFSSFPQLVHLDLS-LNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP 117
L S ++ P L L + +N G IP I LT+L Y+ + +SG IP
Sbjct: 59 GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118
Query: 118 AEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNI-VR 176
+ + L L F +N L G++PP + L ++ + N ++G++P G+ S +
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178
Query: 177 LYINNNSLSGSILTNIGNLKFLF--------ELDLSFLPLSVGNLTNLKSLGLMDNHLSG 228
+ I+ N L+G I NL F E D S L G+ N + + L N L+
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL---FGSDKNTQKIHLAKNSLAF 235
Query: 229 SIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPE 279
+ + L L L N G LP + + L + VS N+ G IP+
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 5/221 (2%)
Query: 206 LPLSVGNLTNLKSLGLMD-NHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLL 263
+P S+ NL L L + N+L G IPP+ + L +L ++ + +G +P + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 264 EAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNL-TFIDLSRNNFY 322
S N GT+P S+ + +L+ + +GN ++G I ++ G + L T + +SRN
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 323 GEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNS 382
G+I + L +++S N + G G+ Q + L+ N + ++ K +G +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN 245
Query: 383 LTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPE 423
L L LR N++ G LP + L L L+ S N +P+
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 100/256 (39%), Gaps = 34/256 (13%)
Query: 301 ISEALGLYPNLTFIDLSR-NNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQL 359
I +L P L F+ + NN G I K +L L ++ N++G IP + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 360 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIEL-EYLDFSANKFN 418
LD S N + G +P + L +L + GN+++G +P GS +L + S N+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 419 NSVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXXXXXXSELDASHNLFGGEIPFQICSL-- 476
+P F E DAS LFG + Q L
Sbjct: 188 GKIPP----------------TFANLNLAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAK 230
Query: 477 -------------KSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAF 523
K+L L+L +N + G +P + L +++S N L G +P
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290
Query: 524 RNAPVEALEGNKELCG 539
+ V A NK LCG
Sbjct: 291 QRFDVSAYANNKCLCG 306
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
+++F + +G GG G VY+ L G +VAVK+ + +F TEV+ ++
Sbjct: 29 SDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQ---GGELQFQTEVEMISMAV 85
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
HRN+++ GFC LVY ++ GS+A+ L
Sbjct: 86 HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 119
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
+++F + +G GG G VY+ L G +VAVK+ + +F TEV+ ++
Sbjct: 37 SDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEE---RXQGGELQFQTEVEMISMAV 93
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
HRN+++ GFC LVY ++ GS+A+ L
Sbjct: 94 HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 127
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 608 LNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVK-----KFHSSIPC 662
L F+G + D++ D + + IG G G+V+RAE G VAVK FH+
Sbjct: 21 LYFQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAE--- 76
Query: 663 DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
EFL EV + +RH NIV F G + + +V E+L RGSL +L
Sbjct: 77 ----RVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLL 125
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 608 LNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVK-----KFHSSIPC 662
L F+G + D++ D + + IG G G+V+RAE G VAVK FH+
Sbjct: 21 LYFQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAE--- 76
Query: 663 DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
EFL EV + +RH NIV F G + + +V E+L RGSL +L
Sbjct: 77 ----RVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLL 125
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 608 LNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIA 666
L F+G YD+ E D ++ +G G +G VY + VAVK +
Sbjct: 10 LYFQGSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTM 64
Query: 667 DQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ +EFL E + EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 65 EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 109
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 632 IGNGGHGSVYRAEL----PSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G G G V+ AE P+ + +VAVK +A +K+F E + LT ++H +
Sbjct: 23 LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPT----LAARKDFQREAELLTNLQHEH 78
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IVKFYG C +V+E+++ G L L
Sbjct: 79 IVKFYGVCGDGDPLIMVFEYMKHGDLNKFL 108
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 212 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 266
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 267 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 303
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 209 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 263
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ EI+H N+V+ G C+ +++ EF+ G+L L
Sbjct: 264 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYL 304
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 10 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 64
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 65 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 101
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 251 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 305
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ EI+H N+V+ G C+ +++ EF+ G+L L
Sbjct: 306 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYL 346
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 6 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 60
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 61 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 97
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 6 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 60
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 61 AAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNL 97
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 10 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 64
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 65 AAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNL 101
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
+ + + E +G G G V +A+ + +V A+K+ S +++K F+ E++ L+ +
Sbjct: 7 DYKEIEVEEVVGRGAFGVVCKAKWRAKDV-AIKQIESE------SERKAFIVELRQLSRV 59
Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
H NIVK YG C + LV E+ E GSL +L
Sbjct: 60 NHPNIVKLYGACLNP--VCLVMEYAEGGSLYNVL 91
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 9 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 63
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 64 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 100
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 10 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 64
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 65 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 101
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 7 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 61
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 62 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 98
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
+ + + E +G G G V +A+ + +V A+K+ S +++K F+ E++ L+ +
Sbjct: 6 DYKEIEVEEVVGRGAFGVVCKAKWRAKDV-AIKQIESE------SERKAFIVELRQLSRV 58
Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
H NIVK YG C + LV E+ E GSL +L
Sbjct: 59 NHPNIVKLYGACLNP--VCLVMEYAEGGSLYNVL 90
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 10 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 64
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 65 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 101
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 5 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 59
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 60 AAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNL 96
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 10 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 64
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 65 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 101
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 5 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 59
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 60 AAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNL 96
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 5 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 59
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 60 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 96
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 5 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 59
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 60 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 96
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 7 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 61
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 62 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 98
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 5 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 59
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 60 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 96
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 5 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 59
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 60 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 96
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTE 674
YD+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 7 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKE 61
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 62 AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 98
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
TN+FD ++ IG+G G VY+ L G VA+K+ P + +EF TE++ L+ R
Sbjct: 38 TNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR---RTP-ESSQGIEEFETEIETLSFCR 93
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
H ++V GFC L+Y+++E G+L
Sbjct: 94 HPHLVSLIGFCDERNEMILIYKYMENGNL 122
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
TN+FD ++ IG+G G VY+ L G VA+K+ P + +EF TE++ L+ R
Sbjct: 38 TNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR---RTP-ESSQGIEEFETEIETLSFCR 93
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
H ++V GFC L+Y+++E G+L
Sbjct: 94 HPHLVSLIGFCDERNEMILIYKYMENGNL 122
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAE----LPSGE--VVAVKKFHSSIPCDQIADQKEFLTEV 675
+ D ++ +G G G V+ AE LP + +VAVK + + +++F E
Sbjct: 39 KRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA----SESARQDFQREA 94
Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ LT ++H++IV+F+G C+ + +V+E++ G L
Sbjct: 95 ELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL 130
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAE----LPSGE--VVAVKKFHSSIPCDQIADQKEFLTEV 675
+ D ++ +G G G V+ AE LP + +VAVK + + +++F E
Sbjct: 16 KRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA----SESARQDFQREA 71
Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ LT ++H++IV+F+G C+ + +V+E++ G L
Sbjct: 72 ELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL 107
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAE----LPSGE--VVAVKKFHSSIPCDQIADQKEFLTEV 675
+ D ++ +G G G V+ AE LP + +VAVK + + +++F E
Sbjct: 10 KRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA----SESARQDFQREA 65
Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ LT ++H++IV+F+G C+ + +V+E++ G L
Sbjct: 66 ELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL 101
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 618 EIVRETNDFDAEYC------IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEF 671
E+ TN+FD +G GG G VY+ + + VAVKK + + +++F
Sbjct: 19 ELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQF 77
Query: 672 LTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
E++ + + +H N+V+ GF S LVY ++ GSL LS
Sbjct: 78 DQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLS 122
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 618 EIVRETNDFDAEYC------IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEF 671
E+ TN+FD +G GG G VY+ + + VAVKK + + +++F
Sbjct: 19 ELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQF 77
Query: 672 LTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
E++ + + +H N+V+ GF S LVY ++ GSL LS
Sbjct: 78 DQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLS 122
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 618 EIVRETNDFDAEYC------IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEF 671
E+ TN+FD +G GG G VY+ + + VAVKK + + +++F
Sbjct: 13 ELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQF 71
Query: 672 LTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
E++ + + +H N+V+ GF S LVY ++ GSL LS
Sbjct: 72 DQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLS 116
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 632 IGNGGHGSVYRAELPSG-EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G G V+ L + +VAVK ++P D A +FL E + L + H NIV+
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKA---KFLQEARILKQYSHPNIVRLI 178
Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
G C+ Q ++V E ++ G L
Sbjct: 179 GVCTQKQPIYIVMELVQGGDFLTFL 203
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 632 IGNGGHGSVYRAELPSG-EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G G V+ L + +VAVK ++P D A +FL E + L + H NIV+
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKA---KFLQEARILKQYSHPNIVRLI 178
Query: 691 GFCSHAQHSFLVYEFLERGSLAAIL 715
G C+ Q ++V E ++ G L
Sbjct: 179 GVCTQKQPIYIVMELVQGGDFLTFL 203
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 617 DEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEV 675
D+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 4 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEA 58
Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 59 AVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNL 94
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Query: 632 IGNGGHGSVYRAEL----PSGE--VVAVKKFHSSIPCDQIAD--QKEFLTEVQALTEIRH 683
+G G G V+ AE P + +VAVK + +D +K+F E + LT ++H
Sbjct: 21 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA------SDNARKDFHREAELLTNLQH 74
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+IVKFYG C +V+E+++ G L L
Sbjct: 75 EHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFL 106
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 118/291 (40%), Gaps = 24/291 (8%)
Query: 81 LDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSI 140
L+L+ N P+ ++L+ + N +S P +L LKVL+ Q NEL
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 141 PPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFE 200
+++ EL L SN ++ N N+++L +++N LS T +G
Sbjct: 90 DQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS---TKLGT------ 140
Query: 201 LDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRG 260
+ L L K L L L GNS L L LS N + P
Sbjct: 141 -GVQLENLQELLLAKNKILALRSEELEF-----LGNSSLRKLDLSSNPLKEFSPGCFQTI 194
Query: 261 GLLEAFIVSENHFQGTIPESLRNC-----TSLIRVRLNGNNLTGNISEAL-GL-YPNLTF 313
G L A +++ + E L C TS+ + L N L GL + NLT
Sbjct: 195 GKLFALLLNNAQLNPHLTEKL--CWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQ 252
Query: 314 IDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDL 364
+DLS NN + + ++ P L L++ NNI PR +S L+ L L
Sbjct: 253 LDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 470 PFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQL 513
PF+ L++L L+LS+NN++ + + EG+ L I+D N L
Sbjct: 475 PFR--PLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNL 516
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 53 VTNISLRNTGLSGTLRD-FSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ 111
+ N+SL N L T FS + L LDLS N L L Y+SL+ N
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 112 LSGKIPAEVGLLTHLKVLSFQ 132
+ P L++L+ LS +
Sbjct: 284 IQRLSPRSFYGLSNLRYLSLK 304
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
+G G +G V + +G +VA+KKF S D +K + E++ L ++RH N+V
Sbjct: 33 VGEGSYGMVMKCRNKDTGRIVAIKKFLESD--DDKMVKKIAMREIKLLKQLRHENLVNLL 90
Query: 691 GFCSHAQHSFLVYEFLERGSL 711
C + +LV+EF++ L
Sbjct: 91 EVCKKKKRWYLVFEFVDHTIL 111
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 617 DEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEV 675
D+ E D ++ +G G +G VY + VAVK + + +EFL E
Sbjct: 4 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEA 58
Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 59 AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 94
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 613 KLVYDEIVRETND-FDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKE 670
KL D + ++ + FD +G G +GSVY+A +G++VA+K+ +P + +D +E
Sbjct: 17 KLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQ----VPVE--SDLQE 70
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ E+ + + ++VK+YG ++V E+ GS++ I+
Sbjct: 71 IIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDII 115
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 76
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ EFL GSL L
Sbjct: 77 VKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQ 108
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG G +G VY+A+ GE A+KK + I + E+ L E++H NIVK Y
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT--IREISILKELKHSNIVKLYD 67
Query: 692 FCSHAQHSFLVYEFLER 708
+ LV+E L++
Sbjct: 68 VIHTKKRLVLVFEHLDQ 84
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG G +G VY+A+ GE A+KK + I + E+ L E++H NIVK Y
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT--IREISILKELKHSNIVKLYD 67
Query: 692 FCSHAQHSFLVYEFLER 708
+ LV+E L++
Sbjct: 68 VIHTKKRLVLVFEHLDQ 84
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG G +G VY+A+ GE A+KK + I + E+ L E++H NIVK Y
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTT--IREISILKELKHSNIVKLYD 67
Query: 692 FCSHAQHSFLVYEFLER 708
+ LV+E L++
Sbjct: 68 VIHTKKRLVLVFEHLDQ 84
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 617 DEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEV 675
D+ E D ++ +G G G VY + VAVK + + +EFL E
Sbjct: 4 DKWEMERTDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEA 58
Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ EI+H N+V+ G C+ +++ EF+ G+L
Sbjct: 59 AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 94
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 73
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 74 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 91
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 92 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 123
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 91
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 92 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 123
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 17 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 72
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 73 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 104
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 16 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 71
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 72 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 103
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 73
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 74 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 76
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 77 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 108
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 24 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 79
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 80 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 111
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 49 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 104
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 105 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 136
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 76
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 77 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 108
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 23 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 78
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 79 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 110
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 73
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 74 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 22 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 77
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 78 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 109
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 25 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 80
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 81 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 112
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +GEVVAVKK S ++F E++ L ++H NI
Sbjct: 19 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE----EHLRDFEREIEILKSLQHDNI 74
Query: 687 VKFYGFCSHA--QHSFLVYEFLERGSLAAILS 716
VK+ G C A ++ L+ E+L GSL L
Sbjct: 75 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 106
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 314 IDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEI 373
+DLS + IS+N K L L ++ N++T +P EI N+S L+ LDLS N + +
Sbjct: 229 LDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-L 285
Query: 374 PKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSAN 415
P ELG L N +T LP E G+L L++L N
Sbjct: 286 PAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGN 326
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 77 QLVH-LDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNE 135
QL H LDLS F I + I L+ + L+ N L+ ++PAE+ L++L+VL N
Sbjct: 224 QLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281
Query: 136 LDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSIL 189
L S+P E+ ++ + + N + +LP GNL N+ L + N L L
Sbjct: 282 L-TSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 10/82 (12%)
Query: 154 FLYSNHLNGS----LPPFLGNLSNIVRLYINNNSLSGSILTNIGN---LKFLFELD--LS 204
FL +LNG+ LP + NLSN+ L +++N L+ S+ +G+ LK+ + D ++
Sbjct: 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 205 FLPLSVGNLTNLKSLGLMDNHL 226
LP GNL NL+ LG+ N L
Sbjct: 307 TLPWEFGNLCNLQFLGVEGNPL 328
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 114 GKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSN 173
GK A LL H K+ + +E D ++ + + Y + L +L +LSN
Sbjct: 184 GKDEANQALLQHKKLSQYSIDEDD-----DIENRMVMPKDSKYDDQLWHAL-----DLSN 233
Query: 174 IVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS 233
+ I+ N LT + +L L+ LP + NL+NL+ L L N L+ S+P
Sbjct: 234 LQIFNISANIFKYDFLTRL----YLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE 288
Query: 234 FG 235
G
Sbjct: 289 LG 290
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 617 DEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQ----KEFL 672
D+ E D ++ +G G +G VY V KK+ ++ + + +EFL
Sbjct: 25 DKWEMERTDITMKHKLGGGQYGEVY--------VGVWKKYSLTVAVKTLKEDTMEVEEFL 76
Query: 673 TEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
E + EI+H N+V+ G C+ ++V E++ G+L
Sbjct: 77 KEAAVMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNL 115
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
D++ Y IG G +G + S G+++ K+ + A+++ ++EV L E+
Sbjct: 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE--AEKQMLVSEVNLLREL 62
Query: 682 RHRNIVKFYGFCSHAQHS--FLVYEFLERGSLAAILS 716
+H NIV++Y ++ ++V E+ E G LA++++
Sbjct: 63 KHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVIT 99
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
D++ Y IG G +G + S G+++ K+ + A+++ ++EV L E+
Sbjct: 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE--AEKQMLVSEVNLLREL 62
Query: 682 RHRNIVKFYGFCSHAQHS--FLVYEFLERGSLAAILS 716
+H NIV++Y ++ ++V E+ E G LA++++
Sbjct: 63 KHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVIT 99
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 19/164 (11%)
Query: 67 LRDF-SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
L+D + +S L LDL+ N P + LTKL+ + L +NQ+S P + LT
Sbjct: 228 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 283
Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
L L N+L+ P + L ++ L LY N+++ P + +L+ + RL+ +NN +S
Sbjct: 284 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS 339
Query: 186 G-SILTNIGNLKFLFE-----LDLSFLPLSVGNLTNLKSLGLMD 223
S L N+ N+ +L DL+ PL NLT + LGL D
Sbjct: 340 DVSSLANLTNINWLSAGHNQISDLT--PL--ANLTRITQLGLND 379
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 145/348 (41%), Gaps = 82/348 (23%)
Query: 78 LVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELD 137
L ++ S N P + NLTKL I +++NQ++ P
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-------------------- 102
Query: 138 GSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG----SILTNIG 193
+ L+++ L L++N + P L NL+N+ RL +++N++S S LT++
Sbjct: 103 ------LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQ 154
Query: 194 NLKFLFEL-DLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGY 252
L F ++ DL PL NLT L+ L + N +S S+L LT
Sbjct: 155 QLNFGNQVTDLK--PL--ANLTTLERLDISSNKVSDI-------SVLAKLT--------- 194
Query: 253 LPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLT 312
LE+ I + N P + T+L + LNGN L L NLT
Sbjct: 195 ---------NLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLT 241
Query: 313 FIDLSRNNFYGEISSNWGK---CPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHI 369
+DL+ N SN KL L + N I+ P + ++ L L+L+ N +
Sbjct: 242 DLDLANNQI-----SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 294
Query: 370 VGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKF 417
P + L +LT L L N ++ P + SL +L+ L FS NK
Sbjct: 295 EDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV 338
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 95/215 (44%), Gaps = 24/215 (11%)
Query: 212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLP-HNICRGGLLEAFIVSE 270
NLT L + LM+N+ I P + LT LTL N T P N+ LE +S
Sbjct: 83 NLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS 138
Query: 271 NHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWG 330
N +L TSL ++ GN +T + L L +D+S N +IS
Sbjct: 139 NTISDI--SALSGLTSLQQLNF-GNQVTD--LKPLANLTTLERLDISSNKV-SDISV-LA 191
Query: 331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI--- 387
K L +L + N I+ P +G ++ L L L+ N + K++G L SLT L
Sbjct: 192 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 244
Query: 388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVP 422
L NQ++ P + L +L L AN+ +N P
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISNISP 277
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 13 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 72
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ RG +
Sbjct: 73 PNILRLYGYFHDATRVYLILEYAPRGEV 100
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
D++ Y IG G +G + S G+++ K+ + A+++ ++EV L E+
Sbjct: 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE--AEKQMLVSEVNLLREL 62
Query: 682 RHRNIVKFYGFCSHAQHS--FLVYEFLERGSLAAILS 716
+H NIV++Y ++ ++V E+ E G LA++++
Sbjct: 63 KHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVIT 99
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 19/164 (11%)
Query: 67 LRDF-SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
L+D + +S L LDL+ N P + LTKL+ + L +NQ+S P + LT
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 284
Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
L L N+L+ P + L ++ L LY N+++ P + +L+ + RL+ +NN +S
Sbjct: 285 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVS 340
Query: 186 G-SILTNIGNLKFLFE-----LDLSFLPLSVGNLTNLKSLGLMD 223
S L N+ N+ +L DL+ PL NLT + LGL D
Sbjct: 341 DVSSLANLTNINWLSAGHNQISDLT--PL--ANLTRITQLGLND 380
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 119/268 (44%), Gaps = 39/268 (14%)
Query: 78 LVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP-AEVGLLTHLKVLSFQFNEL 136
L ++ S N P + NLTKL I +++NQ++ P A + LT L + + Q ++
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 137 DG-----------------SIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYI 179
D S + L+S+++L SN + P L NL+ + RL I
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI 180
Query: 180 NNNSLSG-SILTNIGNLKFLFELDLSFLPLS-VGNLTNLKSLGLMDNHLS--GSIPPSFG 235
++N +S S+L + NL+ L + ++ +G LTNL L L N L G++ S
Sbjct: 181 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL-ASLT 239
Query: 236 NSMLTWLTLSGNHFTGYLPHNICRGGL--LEAFIVSENHFQGTIPESLRNCTSLIRVRLN 293
N LT L L+ N + P GL L + N P L T+L + LN
Sbjct: 240 N--LTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 291
Query: 294 GNNLTGNISEALGLYPNLTFIDLSRNNF 321
N L +IS L NLT++ L NN
Sbjct: 292 ENQL-EDISPISNLK-NLTYLTLYFNNI 317
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 95/215 (44%), Gaps = 23/215 (10%)
Query: 212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLP-HNICRGGLLEAFIVSE 270
NLT L + LM+N+ I P + LT LTL N T P N+ LE +S
Sbjct: 83 NLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS 138
Query: 271 NHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWG 330
N +L TSL ++ + N +T + L L +D+S N +IS
Sbjct: 139 NTISDI--SALSGLTSLQQLSFSSNQVTD--LKPLANLTTLERLDISSNKV-SDISV-LA 192
Query: 331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI--- 387
K L +L + N I+ P +G ++ L L L+ N + K++G L SLT L
Sbjct: 193 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 245
Query: 388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVP 422
L NQ++ P + L +L L AN+ +N P
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 13 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 72
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ RG +
Sbjct: 73 PNILRLYGYFHDATRVYLILEYAPRGEV 100
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 633 GNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGF 692
G GG G VY+ + + VAVKK + + +++F E++ + +H N+V+ GF
Sbjct: 31 GEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVELLGF 89
Query: 693 CSHAQHSFLVYEFLERGSLAAILS 716
S LVY + GSL LS
Sbjct: 90 SSDGDDLCLVYVYXPNGSLLDRLS 113
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 14 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 71
Query: 691 GFCSHAQHSFLVYEFL 706
+LV+EFL
Sbjct: 72 DVIHTENKLYLVFEFL 87
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 14 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 71
Query: 691 GFCSHAQHSFLVYEFL 706
+LV+EFL
Sbjct: 72 DVIHTENKLYLVFEFL 87
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 11 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 69 DVIHTENKLYLVFEFLHQ 86
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 13 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 70
Query: 691 GFCSHAQHSFLVYEFL 706
+LV+EFL
Sbjct: 71 DVIHTENKLYLVFEFL 86
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 11 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 69 DVIHTENKLYLVFEFLHQ 86
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 14 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 71
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 72 DVIHTENKLYLVFEFLHQ 89
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 15 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 72
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 73 DVIHTENKLYLVFEFLHQ 90
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 12 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 69
Query: 691 GFCSHAQHSFLVYEFL 706
+LV+EFL
Sbjct: 70 DVIHTENKLYLVFEFL 85
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 11 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 69 DVIHTENKLYLVFEFLHQ 86
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 18 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 75
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 76 DVIHTENKLYLVFEFLHQ 93
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 617 DEIVRE-TNDFDAEYC-----IGNGGHGSVYRAELPSG----EVVAVKKFHSSIPCDQIA 666
+E VRE + D Y IG G G V R L + VA+K Q
Sbjct: 3 NEAVREFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQ-- 60
Query: 667 DQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
++EFL+E + + H NI++ G +++ ++ EF+E G+L + L
Sbjct: 61 -RREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFL 108
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 11 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 69 DVIHTENKLYLVFEFLHQ 86
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
+ +F IG G +G VY+A +GEVVA+KK + + + E+ L E
Sbjct: 5 DMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 62
Query: 681 IRHRNIVKFYGFCSHAQHSFLVYEFLER 708
+ H NIVK +LV+EFL +
Sbjct: 63 LNHPNIVKLLDVIHTENKLYLVFEFLHQ 90
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 11 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 69 DVIHTENKLYLVFEFLHQ 86
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 12 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 69
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 70 DVIHTENKLYLVFEFLHQ 87
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 14 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 71
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 72 DVIHTENKLYLVFEFLHQ 89
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 13 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 70
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 71 DVIHTENKLYLVFEFLHQ 88
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 10 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 67
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 68 DVIHTENKLYLVFEFLHQ 85
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 13 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 70
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 71 DVIHTENKLYLVFEFLHQ 88
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 12 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 69
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 70 DVIHTENKLYLVFEFLHQ 87
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 11 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 69 DVIHTENKLYLVFEFLHQ 86
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 14 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 71
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 72 DVIHTENKLYLVFEFLHQ 89
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 10 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 67
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 68 DVIHTENKLYLVFEFLHQ 85
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 13 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 70
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 71 DVIHTENKLYLVFEFLHQ 88
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 10 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 67
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 68 DVIHTENKLYLVFEFLHQ 85
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 11 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 69 DVIHTENKLYLVFEFLHQ 86
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 18 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 75
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 76 DVIHTENKLYLVFEFLHQ 93
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 12 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 69
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 70 DVIHTENKLYLVFEFLHQ 87
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 11 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 69 DVIHTENKLYLVFEFLHQ 86
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 11 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 69 DVIHTENKLYLVFEFLHQ 86
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 10 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 67
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 68 DVIHTENKLYLVFEFLHQ 85
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 629 EYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKE-FLTEVQALTEIRHRNIV 687
E IG GG G VYRA G+ VAVK P + I+ E E + ++H NI+
Sbjct: 12 EEIIGIGGFGKVYRA-FWIGDEVAVKAARHD-PDEDISQTIENVRQEAKLFAMLKHPNII 69
Query: 688 KFYGFCSHAQHSFLVYEFLERGSLAAILS 716
G C + LV EF G L +LS
Sbjct: 70 ALRGVCLKEPNLCLVMEFARGGPLNRVLS 98
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 12 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 69
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 70 DVIHTENKLYLVFEFLHQ 87
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 19/164 (11%)
Query: 67 LRDF-SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
L+D + +S L LDL+ N P + LTKL+ + L +NQ+S P + LT
Sbjct: 232 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 287
Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
L L N+L+ P + L ++ L LY N+++ P + +L+ + RL+ NN +S
Sbjct: 288 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS 343
Query: 186 G-SILTNIGNLKFLFE-----LDLSFLPLSVGNLTNLKSLGLMD 223
S L N+ N+ +L DL+ PL NLT + LGL D
Sbjct: 344 DVSSLANLTNINWLSAGHNQISDLT--PL--ANLTRITQLGLND 383
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 145/348 (41%), Gaps = 82/348 (23%)
Query: 78 LVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELD 137
L ++ S N P + NLTKL I +++NQ++ P
Sbjct: 69 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-------------------- 106
Query: 138 GSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG----SILTNIG 193
+ L+++ L L++N + P L NL+N+ RL +++N++S S LT++
Sbjct: 107 ------LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQ 158
Query: 194 NLKFLFEL-DLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGY 252
L F ++ DL PL NLT L+ L + N +S S+L LT
Sbjct: 159 QLSFGNQVTDLK--PL--ANLTTLERLDISSNKVSDI-------SVLAKLT--------- 198
Query: 253 LPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLT 312
LE+ I + N P + T+L + LNGN L L NLT
Sbjct: 199 ---------NLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLT 245
Query: 313 FIDLSRNNFYGEISSNWGK---CPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHI 369
+DL+ N SN KL L + N I+ P + ++ L L+L+ N +
Sbjct: 246 DLDLANNQI-----SNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 298
Query: 370 VGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKF 417
P + L +LT L L N ++ P + SL +L+ L F+ NK
Sbjct: 299 EDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV 342
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 95/215 (44%), Gaps = 24/215 (11%)
Query: 212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLP-HNICRGGLLEAFIVSE 270
NLT L + LM+N+ I P + LT LTL N T P N+ LE +S
Sbjct: 87 NLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS 142
Query: 271 NHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWG 330
N +L TSL ++ GN +T + L L +D+S N +IS
Sbjct: 143 NTISDI--SALSGLTSLQQLSF-GNQVTD--LKPLANLTTLERLDISSNKV-SDISV-LA 195
Query: 331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI--- 387
K L +L + N I+ P +G ++ L L L+ N + K++G L SLT L
Sbjct: 196 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 248
Query: 388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVP 422
L NQ++ P + L +L L AN+ +N P
Sbjct: 249 LANNQISNLAP--LSGLTKLTELKLGANQISNISP 281
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 65/141 (46%), Gaps = 25/141 (17%)
Query: 94 SQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLSSIEE 152
S + LT L+Y+ L NQL LT+LK L N+L S+P V +L+++
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTY 137
Query: 153 LFLYSNHLNGSLPP-FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSV- 210
L+LY N L SLP L+N+ RL ++NN L LP V
Sbjct: 138 LYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQS-------------------LPEGVF 177
Query: 211 GNLTNLKSLGLMDNHLSGSIP 231
LT LK L L DN L S+P
Sbjct: 178 DKLTQLKQLSLNDNQLK-SVP 197
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 66 TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
+L D F L +L L N LT L+ + LD+NQL LT
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ 182
Query: 126 LKVLSFQFNELDGSIPPEVC-QLSSIEELFLYSN 158
LK LS N+L S+P V +L+S+ ++L +N
Sbjct: 183 LKQLSLNDNQL-KSVPDGVFDRLTSLTHIWLLNN 215
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
+D++ + IG+G V A P E VA+K+ + C D E L E+QA+++
Sbjct: 10 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLE-KCQTSMD--ELLKEIQAMSQCH 66
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
H NIV +Y +LV + L GS+ I+
Sbjct: 67 HPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIK 100
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DFD +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 12 EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 72 PNILRLYGYFHDATRVYLILEYAPLGTV 99
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 99 LTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLSSIEELFLYS 157
L L+ + LD NQL P LT L LS +NEL S+P V +L+S++EL LY+
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYN 166
Query: 158 NHLNGSLPPFLGNLSNIVRLYINNNSLS 185
N L L+ + L ++NN L
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 37/89 (41%)
Query: 72 FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF 131
F L L L N P +LTKL+Y+SL N+L LT LK L
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164
Query: 132 QFNELDGSIPPEVCQLSSIEELFLYSNHL 160
N+L +L+ ++ L L +N L
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 33/209 (15%)
Query: 116 IPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLSSIEELFLYSNHLNGSLPPFLGNLSNI 174
IPA+ K L Q N+L S+P + +L+ + L+L N L L N+
Sbjct: 35 IPADT------KKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 175 VRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSV-GNLTNLKSLGLMDNHLSGSIPPS 233
L++ +N L LP+ V L NL L L N L S+PP
Sbjct: 88 ETLWVTDNKLQA-------------------LPIGVFDQLVNLAELRLDRNQLK-SLPPR 127
Query: 234 FGNSM--LTWLTLSGNHFTGYLPHNIC-RGGLLEAFIVSENHFQGTIPESLRNCTSLIRV 290
+S+ LT+L+L N LP + + L+ + N + + T L +
Sbjct: 128 VFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186
Query: 291 RLNGNNLTGNISEALGLYPNLTFIDLSRN 319
+L+ N L A L + L N
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DFD +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 12 EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 72 PNILRLYGYFHDATRVYLILEYAPLGTV 99
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
+D++ + IG+G V A P E VA+K+ + C D E L E+QA+++
Sbjct: 15 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLE-KCQTSMD--ELLKEIQAMSQCH 71
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
H NIV +Y +LV + L GS+ I+
Sbjct: 72 HPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIK 105
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 19/164 (11%)
Query: 67 LRDF-SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
L+D + +S L LDL+ N P + LTKL+ + L +NQ+S P + LT
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 284
Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
L L N+L+ P + L ++ L LY N+++ P + +L+ + RL+ NN +S
Sbjct: 285 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 340
Query: 186 G-SILTNIGNLKFLFE-----LDLSFLPLSVGNLTNLKSLGLMD 223
S L N+ N+ +L DL+ PL NLT + LGL D
Sbjct: 341 DVSSLANLTNINWLSAGHNQISDLT--PL--ANLTRITQLGLND 380
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 119/268 (44%), Gaps = 39/268 (14%)
Query: 78 LVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP-AEVGLLTHLKVLSFQFNEL 136
L ++ S N P + NLTKL I +++NQ++ P A + LT L + + Q ++
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 137 DG-----------------SIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYI 179
D S + L+S+++L SN + P L NL+ + RL I
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI 180
Query: 180 NNNSLSG-SILTNIGNLKFLFELDLSFLPLS-VGNLTNLKSLGLMDNHLS--GSIPPSFG 235
++N +S S+L + NL+ L + ++ +G LTNL L L N L G++ S
Sbjct: 181 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL-ASLT 239
Query: 236 NSMLTWLTLSGNHFTGYLPHNICRGGL--LEAFIVSENHFQGTIPESLRNCTSLIRVRLN 293
N LT L L+ N + P GL L + N P L T+L + LN
Sbjct: 240 N--LTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 291
Query: 294 GNNLTGNISEALGLYPNLTFIDLSRNNF 321
N L +IS L NLT++ L NN
Sbjct: 292 ENQL-EDISPISNL-KNLTYLTLYFNNI 317
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 95/215 (44%), Gaps = 23/215 (10%)
Query: 212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLP-HNICRGGLLEAFIVSE 270
NLT L + LM+N+ I P + LT LTL N T P N+ LE +S
Sbjct: 83 NLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS 138
Query: 271 NHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWG 330
N +L TSL ++ + N +T + L L +D+S N +IS
Sbjct: 139 NTISDI--SALSGLTSLQQLSFSSNQVTD--LKPLANLTTLERLDISSNKV-SDISV-LA 192
Query: 331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI--- 387
K L +L + N I+ P +G ++ L L L+ N + K++G L SLT L
Sbjct: 193 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 245
Query: 388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVP 422
L NQ++ P + L +L L AN+ +N P
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 19/164 (11%)
Query: 67 LRDF-SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
L+D + +S L LDL+ N P + LTKL+ + L +NQ+S P + LT
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 288
Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
L L N+L+ P + L ++ L LY N+++ P + +L+ + RL+ NN +S
Sbjct: 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344
Query: 186 G-SILTNIGNLKFLFE-----LDLSFLPLSVGNLTNLKSLGLMD 223
S L N+ N+ +L DL+ PL NLT + LGL D
Sbjct: 345 DVSSLANLTNINWLSAGHNQISDLT--PL--ANLTRITQLGLND 384
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 119/271 (43%), Gaps = 46/271 (16%)
Query: 78 LVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP-AEVGLLTHLKVLSFQFNEL 136
L ++ S N P + NLTKL I +++NQ++ P A + LT L + + Q ++
Sbjct: 70 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 127
Query: 137 DGSIPPEVCQLSSIEELFLYSNHLNG--------------------SLPPFLGNLSNIVR 176
D + L+++ L L SN ++ L P L NL+ + R
Sbjct: 128 D-----PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLER 181
Query: 177 LYINNNSLSG-SILTNIGNLKFLFELDLSFLPLS-VGNLTNLKSLGLMDNHLS--GSIPP 232
L I++N +S S+L + NL+ L + ++ +G LTNL L L N L G++
Sbjct: 182 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL-A 240
Query: 233 SFGNSMLTWLTLSGNHFTGYLPHNICRGGL--LEAFIVSENHFQGTIPESLRNCTSLIRV 290
S N LT L L+ N + P GL L + N P L T+L +
Sbjct: 241 SLTN--LTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292
Query: 291 RLNGNNLTGNISEALGLYPNLTFIDLSRNNF 321
LN N L +IS L NLT++ L NN
Sbjct: 293 ELNENQL-EDISPISNLK-NLTYLTLYFNNI 321
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 95/215 (44%), Gaps = 24/215 (11%)
Query: 212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLP-HNICRGGLLEAFIVSE 270
NLT L + LM+N+ I P + LT LTL N T P N+ LE +S
Sbjct: 88 NLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS 143
Query: 271 NHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWG 330
N +L TSL ++ GN +T + L L +D+S N +IS
Sbjct: 144 NTISDI--SALSGLTSLQQLSF-GNQVTD--LKPLANLTTLERLDISSNKV-SDISV-LA 196
Query: 331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI--- 387
K L +L + N I+ P +G ++ L L L+ N + K++G L SLT L
Sbjct: 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 249
Query: 388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVP 422
L NQ++ P + L +L L AN+ +N P
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP 282
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 608 LNFEGKLVYDEIVRETNDFDAEYCIG---NGGHGSVYRAELPSGEVVAVKKFHSSIPCDQ 664
L F+ Y+ + R+ N D IG +G G VY+A+ V+A K + ++
Sbjct: 18 LYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE 77
Query: 665 IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ D ++ E+ L H NIVK + + +++ EF G++ A++
Sbjct: 78 LED---YMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVM 125
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 19/164 (11%)
Query: 67 LRDF-SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
L+D + +S L LDL+ N P + LTKL+ + L +NQ+S P + LT
Sbjct: 228 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 283
Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
L L N+L+ P + L ++ L LY N+++ P + +L+ + RL+ NN +S
Sbjct: 284 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 339
Query: 186 G-SILTNIGNLKFLFE-----LDLSFLPLSVGNLTNLKSLGLMD 223
S L N+ N+ +L DL+ PL NLT + LGL D
Sbjct: 340 DVSSLANLTNINWLSAGHNQISDLT--PL--ANLTRITQLGLND 379
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 119/271 (43%), Gaps = 46/271 (16%)
Query: 78 LVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP-AEVGLLTHLKVLSFQFNEL 136
L ++ S N P + NLTKL I +++NQ++ P A + LT L + + Q ++
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 137 DGSIPPEVCQLSSIEELFLYSNHLNG--------------------SLPPFLGNLSNIVR 176
D + L+++ L L SN ++ L P L NL+ + R
Sbjct: 123 D-----PLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP-LANLTTLER 176
Query: 177 LYINNNSLSG-SILTNIGNLKFLFELDLSFLPLS-VGNLTNLKSLGLMDNHLS--GSIPP 232
L I++N +S S+L + NL+ L + ++ +G LTNL L L N L G++
Sbjct: 177 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL-A 235
Query: 233 SFGNSMLTWLTLSGNHFTGYLPHNICRGGL--LEAFIVSENHFQGTIPESLRNCTSLIRV 290
S N LT L L+ N + P GL L + N P L T+L +
Sbjct: 236 SLTN--LTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNISP--LAGLTALTNL 287
Query: 291 RLNGNNLTGNISEALGLYPNLTFIDLSRNNF 321
LN N L +IS L NLT++ L NN
Sbjct: 288 ELNENQL-EDISPISNL-KNLTYLTLYFNNI 316
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 95/215 (44%), Gaps = 24/215 (11%)
Query: 212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLP-HNICRGGLLEAFIVSE 270
NLT L + LM+N+ I P + LT LTL N T P N+ LE +S
Sbjct: 83 NLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE---LSS 138
Query: 271 NHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWG 330
N +L TSL ++ GN +T + L L +D+S N +IS
Sbjct: 139 NTISDI--SALSGLTSLQQLNF-GNQVTD--LKPLANLTTLERLDISSNKV-SDISV-LA 191
Query: 331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI--- 387
K L +L + N I+ P +G ++ L L L+ N + K++G L SLT L
Sbjct: 192 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLD 244
Query: 388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVP 422
L NQ++ P + L +L L AN+ +N P
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISNISP 277
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 19/164 (11%)
Query: 67 LRDF-SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
L+D + +S L LDL+ N P + LTKL+ + L +NQ+S P + LT
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 284
Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
L L N+L+ P + L ++ L LY N+++ P + +L+ + RL+ NN +S
Sbjct: 285 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 340
Query: 186 G-SILTNIGNLKFLFE-----LDLSFLPLSVGNLTNLKSLGLMD 223
S L N+ N+ +L DL+ PL NLT + LGL D
Sbjct: 341 DVSSLANLTNINWLSAGHNQISDLT--PL--ANLTRITQLGLND 380
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 119/268 (44%), Gaps = 39/268 (14%)
Query: 78 LVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP-AEVGLLTHLKVLSFQFNEL 136
L ++ S N P + NLTKL I +++NQ++ P A + LT L + + Q ++
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 137 DG-----------------SIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYI 179
D S + L+S+++L SN + P L NL+ + RL I
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDI 180
Query: 180 NNNSLSG-SILTNIGNLKFLFELDLSFLPLS-VGNLTNLKSLGLMDNHLS--GSIPPSFG 235
++N +S S+L + NL+ L + ++ +G LTNL L L N L G++ S
Sbjct: 181 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL-ASLT 239
Query: 236 NSMLTWLTLSGNHFTGYLPHNICRGGL--LEAFIVSENHFQGTIPESLRNCTSLIRVRLN 293
N LT L L+ N + P GL L + N P L T+L + LN
Sbjct: 240 N--LTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 291
Query: 294 GNNLTGNISEALGLYPNLTFIDLSRNNF 321
N L +IS L NLT++ L NN
Sbjct: 292 ENQL-EDISPISNL-KNLTYLTLYFNNI 317
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 115/307 (37%), Gaps = 89/307 (28%)
Query: 212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSEN 271
NLT L + LM+N+ I P + LT LTL N T P
Sbjct: 83 NLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDP----------------- 124
Query: 272 HFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGK 331
L+N T+L R+ L+ N + +IS GL
Sbjct: 125 ---------LKNLTNLNRLELSSNTI-SDISALSGLT----------------------- 151
Query: 332 CPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGN 391
L LN S N +T P + N++ L+ LD+S N V +I L KL +L LI N
Sbjct: 152 --SLQQLNFSSNQVTDLKP--LANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNN 205
Query: 392 QLTGRLPTEIGSLIELEYLDFSANKFNNSVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXX 451
Q++ P +G L L+ L + N+ +
Sbjct: 206 QISDITP--LGILTNLDELSLNGNQLKD--------------------------IGTLAS 237
Query: 452 XXXXSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN 511
++LD ++N P + L L +L L N +S + P G+ L+ +++++N
Sbjct: 238 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 293
Query: 512 QLQGPVP 518
QL+ P
Sbjct: 294 QLEDISP 300
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 608 LNFEGKLVYDEIVRETNDFDAEYCIG---NGGHGSVYRAELPSGEVVAVKKFHSSIPCDQ 664
L F+ Y+ + R+ N D IG +G G VY+A+ V+A K + ++
Sbjct: 18 LYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE 77
Query: 665 IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ D ++ E+ L H NIVK + + +++ EF G++ A++
Sbjct: 78 LED---YMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVM 125
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 608 LNFEGKLVYDEIVRETNDFDAEYCIG---NGGHGSVYRAELPSGEVVAVKKFHSSIPCDQ 664
L F+ Y+ + R+ N D IG +G G VY+A+ V+A K + ++
Sbjct: 18 LYFQSMKQYEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE 77
Query: 665 IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ D ++ E+ L H NIVK + + +++ EF G++ A++
Sbjct: 78 LED---YMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVM 125
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGE-VVAVKKF---HSSIPCDQIADQKEFLTEVQALT 679
N+ + E IG GG G V++ L + VVA+K S + I +EF EV ++
Sbjct: 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS 78
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H NIVK YG + +V EF+ G L
Sbjct: 79 NLNHPNIVKLYGLMHNPPR--MVMEFVPCGDL 108
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGE-VVAVKKF---HSSIPCDQIADQKEFLTEVQALT 679
N+ + E IG GG G V++ L + VVA+K S + I +EF EV ++
Sbjct: 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS 78
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H NIVK YG + +V EF+ G L
Sbjct: 79 NLNHPNIVKLYGLMHNPPR--MVMEFVPCGDL 108
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGE-VVAVKKF---HSSIPCDQIADQKEFLTEVQALT 679
N+ + E IG GG G V++ L + VVA+K S + I +EF EV ++
Sbjct: 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS 78
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H NIVK YG + +V EF+ G L
Sbjct: 79 NLNHPNIVKLYGLMHNPPR--MVMEFVPCGDL 108
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKK--FHSSIPCDQIADQKEFLTEVQALTEI 681
+DFD +G G G+VY A + + K F S + + + Q E++ + +
Sbjct: 14 DDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ--LRREIEIQSHL 71
Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
RH NI++ Y + + +L+ EF RG L L
Sbjct: 72 RHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQ 106
>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
Length = 330
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFL--TEVQALTEIRHRNIVK 688
C+G G +G V+R GE VAVK F S D+K + TE+ +RH NI+
Sbjct: 44 CVGKGRYGEVWRGSW-QGENVAVKIFSSR-------DEKSWFRETELYNTVMLRHENILG 95
Query: 689 FYGFCSHAQHS----FLVYEFLERGSLAAIL 715
F ++HS +L+ + E GSL L
Sbjct: 96 FIASDMTSRHSSTQLWLITHYHEMGSLYDYL 126
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKK--FHSSIPCDQIADQKEFLTEVQALTEI 681
+DFD +G G G+VY A + + K F S + + + Q E++ + +
Sbjct: 15 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ--LRREIEIQSHL 72
Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
RH NI++ Y + + +L+ EF RG L L
Sbjct: 73 RHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQ 107
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 616 YDEIVRETNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTE 674
YDE+++ ++ IG GG V A + +GE+VA+K + +D TE
Sbjct: 5 YDELLKY---YELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLG---SDLPRIKTE 58
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
++AL +RH++I + Y A F+V E+ G L
Sbjct: 59 IEALKNLRHQHICQLYHVLETANKIFMVLEYCPGGEL 95
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKK--FHSSIPCDQIADQKEFLTEVQALTEI 681
+DFD +G G G+VY A + + K F S + + + Q E++ + +
Sbjct: 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ--LRREIEIQSHL 71
Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
RH NI++ Y + + +L+ EF RG L L
Sbjct: 72 RHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQ 106
>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3MTF|B Chain B, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3OOM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00507
pdb|3Q4U|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|B Chain B, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|C Chain C, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|D Chain D, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
Length = 301
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFL--TEVQALTEIRHRNIVK 688
C+G G +G V+R GE VAVK F S D+K + TE+ +RH NI+
Sbjct: 15 CVGKGRYGEVWRGSW-QGENVAVKIFSSR-------DEKSWFRETELYNTVMLRHENILG 66
Query: 689 FYGFCSHAQHS----FLVYEFLERGSLAAIL 715
F ++HS +L+ + E GSL L
Sbjct: 67 FIASDMTSRHSSTQLWLITHYHEMGSLYDYL 97
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 629 EYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
E IG G G V R L + VA+K Q ++EFL+E + + H
Sbjct: 19 EEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQ---RREFLSEASIMGQFEHP 75
Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
NI++ G +++ ++ EF+E G+L + L
Sbjct: 76 NIIRLEGVVTNSMPVMILTEFMENGALDSFL 106
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 74/174 (42%), Gaps = 25/174 (14%)
Query: 80 HLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGS 139
LDL G + LTKL++++LD NQL LT L L N+L S
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-AS 97
Query: 140 IPPEVC-QLSSIEELFLYSNHLNGSLPP-FLGNLSNIVRLYINNNSLSGSILTNIGNLKF 197
+P V L+ +++L+L N L SLP L+ + L +N N L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ------------ 144
Query: 198 LFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSM--LTWLTLSGNHF 249
S + LTNL++L L N L S+P + + L +TL GN F
Sbjct: 145 ------SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 56 ISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGK 115
+ L++TGL+ TL D +F +L L+L N +LT+L + L +NQL+
Sbjct: 40 LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 116 IPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLSSIEELFLYSNHLNGSLPPFLGNLSNI 174
LT L L N+L S+P V +L+ ++EL L +N L L+N+
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 175 VRLYINNNSL 184
L ++ N L
Sbjct: 158 QTLSLSTNQL 167
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 75 FPQLVHLD-LSLNG-FFGTIPSQI-GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF 131
F L LD L L G ++PS + LTKL + L++NQL LT+L+ LS
Sbjct: 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Query: 132 QFNELDGSIPPEVCQLSSIEELFLYSNHLNGS 163
N+L +L ++ + L+ N + S
Sbjct: 163 STNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
+G G +G VY+A+ G +VA+K+ + I + E+ L E+ H NIV
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTA--IREISLLKELHHPNIVSLID 86
Query: 692 FCSHAQHSFLVYEFLER 708
+ LV+EF+E+
Sbjct: 87 VIHSERCLTLVFEFMEK 103
>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00135
Length = 301
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFL--TEVQALTEIRHRNIVK 688
C+G G +G V+R GE VAVK F S D+K + TE+ +RH NI+
Sbjct: 15 CVGKGRYGEVWRGSW-QGENVAVKIFSSR-------DEKSWFRETELYNTVMLRHENILG 66
Query: 689 FYGFCSHAQHS----FLVYEFLERGSLAAIL 715
F ++HS +L+ + E GSL L
Sbjct: 67 FIASDMTSRHSSTQLWLITHYHEMGSLYDYL 97
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 632 IGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
IG G G V++A P +VAVK D AD F E + E + N
Sbjct: 55 IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQAD---FQREAALMAEFDNPN 111
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSL 711
IVK G C+ + L++E++ G L
Sbjct: 112 IVKLLGVCAVGKPMCLLFEYMAYGDL 137
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
+G G +G VY+A+ G +VA+K+ + I + E+ L E+ H NIV
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTA--IREISLLKELHHPNIVSLID 86
Query: 692 FCSHAQHSFLVYEFLER 708
+ LV+EF+E+
Sbjct: 87 VIHSERCLTLVFEFMEK 103
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 74/174 (42%), Gaps = 25/174 (14%)
Query: 80 HLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGS 139
LDL G + LTKL++++LD NQL LT L L N+L S
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-AS 97
Query: 140 IPPEVC-QLSSIEELFLYSNHLNGSLPP-FLGNLSNIVRLYINNNSLSGSILTNIGNLKF 197
+P V L+ +++L+L N L SLP L+ + L +N N L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ------------ 144
Query: 198 LFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSM--LTWLTLSGNHF 249
S + LTNL++L L N L S+P + + L +TL GN F
Sbjct: 145 ------SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 56 ISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGK 115
+ L++TGL+ TL D +F +L L+L N +LT+L + L +NQL+
Sbjct: 40 LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 116 IPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLSSIEELFLYSNHLNGSLPPFLGNLSNI 174
LT L L N+L S+P V +L+ ++EL L +N L L+N+
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 175 VRLYINNNSL 184
L ++ N L
Sbjct: 158 QTLSLSTNQL 167
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 75 FPQLVHLD-LSLNG-FFGTIPSQI-GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF 131
F L LD L L G ++PS + LTKL + L++NQL LT+L+ LS
Sbjct: 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Query: 132 QFNELDGSIPPEVCQLSSIEELFLYSNHLNGS 163
N+L +L ++ + L+ N + S
Sbjct: 163 STNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G V+ + + VA+K + +++F+ E + + ++ H +V+ YG
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIR-----EGAMSEEDFIEEAEVMMKLSHPKLVQLYG 69
Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
C LV+EF+E G L+ L
Sbjct: 70 VCLEQAPICLVFEFMEHGCLSDYL 93
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G V+ + + VA+K + +++F+ E + + ++ H +V+ YG
Sbjct: 18 IGSGQFGLVHLGYWLNKDKVAIKTIR-----EGAMSEEDFIEEAEVMMKLSHPKLVQLYG 72
Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
C LV+EF+E G L+ L
Sbjct: 73 VCLEQAPICLVFEFMEHGCLSDYL 96
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 11 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 70
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 71 PNILRLYGYFHDATRVYLILEYAPLGTV 98
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G V+ + + VA+K + +++F+ E + + ++ H +V+ YG
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIR-----EGAMSEEDFIEEAEVMMKLSHPKLVQLYG 69
Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
C LV+EF+E G L+ L
Sbjct: 70 VCLEQAPICLVFEFMEHGCLSDYL 93
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G V+ + + VA+K + +++F+ E + + ++ H +V+ YG
Sbjct: 13 IGSGQFGLVHLGYWLNKDKVAIKTIR-----EGAMSEEDFIEEAEVMMKLSHPKLVQLYG 67
Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
C LV+EF+E G L+ L
Sbjct: 68 VCLEQAPICLVFEFMEHGCLSDYL 91
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 12 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 71
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 72 PNILRLYGYFHDATRVYLILEYAPLGTV 99
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 11 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 70
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 71 PNILRLYGYFHDATRVYLILEYAPLGTV 98
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 269 SENHFQGTIPESLRNCTSLIRVRLNGNNLT--GNISEALGLYPNLTFIDLSRNNF-YGEI 325
S N T+ E+ + T L + L N L I+E +L +D+S+N+ Y E
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391
Query: 326 SSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTK 385
+ L +LN+S N +T I R + +++ LDL N I IPK++ KL +L +
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQE 448
Query: 386 LILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPE 423
L + NQL L L+ + N ++ S P
Sbjct: 449 LNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 52/180 (28%)
Query: 54 TNISLRNTGLSGT--LRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ 111
+N++++N +SGT + S +HLD S N T+ G+LT+L + L NQ
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359
Query: 112 LS-----GKIPAEVGLLTHL---------------------------------------- 126
L ++ ++ L L
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419
Query: 127 ----KVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNN 182
KVL N++ SIP +V +L +++EL + SN L L+++ +++++ N
Sbjct: 420 PPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 8 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 68 PNILRLYGYFHDATRVYLILEYAPLGTV 95
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 9 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 68
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 69 PNILRLYGYFHDATRVYLILEYAPLGTV 96
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+ K + + + E+ L E+ H NIVK
Sbjct: 11 IGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 68
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 69 DVIHTENKLYLVFEFLHQ 86
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+ K + + + E+ L E+ H NIVK
Sbjct: 10 IGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 67
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+EFL +
Sbjct: 68 DVIHTENKLYLVFEFLHQ 85
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 8 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 68 PNILRLYGYFHDATRVYLILEYAPLGTV 95
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 624 NDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKK-FHSSIPCDQIADQKEFLTEVQALTEI 681
+DF+ +G G G+VY A E S +VA+K F S I + + Q E+QA +
Sbjct: 23 DDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQA--HL 80
Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
H NI++ Y + + +L+ E+ RG L
Sbjct: 81 HHPNILRLYNYFYDRRRIYLILEYAPRGEL 110
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 7 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 66
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 67 PNILRLYGYFHDATRVYLILEYAPLGTV 94
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 34 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 93
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 94 PNILRLYGYFHDATRVYLILEYAPLGTV 121
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 11 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 70
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 71 PNILRLYGYFHDATRVYLILEYAPLGTV 98
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 8 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 68 PNILRLYGYFHDATRVYLILEYAPLGTV 95
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 11 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 70
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 71 PNILRLYGYFHDATRVYLILEYAPLGTV 98
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 319 NNFYGEISSN--WGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKE 376
+N G ISS+ +G+ P L L + N +TG P S +Q L L N I K
Sbjct: 38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97
Query: 377 LGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFN 418
L+ L L L NQ++ +P L L L+ ++N FN
Sbjct: 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 54 TNISLRNTGLSGTLRDFSFSSFPQLVHLD----LSLNGFFGTIPSQIGNLTKLSYISLDS 109
T + GL RD + L++ + +S +G FG +P L + L
Sbjct: 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLP-------HLVKLELKR 63
Query: 110 NQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLG 169
NQL+G P +H++ L N++ L ++ L LY N ++ +P
Sbjct: 64 NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123
Query: 170 NLSNIVRLYINNN 182
+L+++ L + +N
Sbjct: 124 HLNSLTSLNLASN 136
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 476 LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
L L KL L N L+G+ PN FEG + + + +N+++
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 11 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 70
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 71 PNILRLYGYFHDATRVYLILEYAPLGTV 98
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 8 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 68 PNILRLYGYFHDATRVYLILEYAPLGTV 95
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 8 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 68 PNILRLYGYFHDATRVYLILEYAPLGTV 95
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 8 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 68 PNILRLYGYFHDATRVYLILEYAPLGTV 95
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 8 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 68 PNILRLYGYFHDATRVYLILEYAPLGTV 95
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 10 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 69
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 70 PNILRLYGYFHDATRVYLILEYAPLGTV 97
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 11 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 70
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 71 PNILRLYGYFHDATRVYLILEYAPLGTV 98
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 13 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 72
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 73 PNILRLYGYFHDATRVYLILEYAPLGTV 100
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 79
Query: 690 YGFCSHAQHSFLVY 703
Y F S + +VY
Sbjct: 80 YFFYSSGEKKDVVY 93
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 34 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 93
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 94 PNILRLYGYFHDATRVYLILEYAPLGTV 121
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 13 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 72
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 73 PNILRLYGYFHDATRVYLILEYAPLGTV 100
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 9 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 68
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 69 PNILRLYGYFHDATRVYLILEYAPLGTV 96
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 9 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 68
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 69 PNILRLYGYFHDATRVYLILEYAPLGTV 96
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 10 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 69
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 70 PNILRLYGYFHDATRVYLILEYAPLGTV 97
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 25 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 84
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 85 PNILRLYGYFHDATRVYLILEYAPLGTV 112
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 5 EDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 64
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 65 PNILRLYGYFHDATRVYLILEYAPLGTV 92
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 616 YDEIVRETNDFDAEYCIGN-GGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTE 674
Y+ + R+ N D IG G G VY+A+ V+A K + +++ D ++ E
Sbjct: 1 YEHVTRDLNPEDFWEIIGELGDFGKVYKAQNKETSVLAAAKVIDTKSEEELED---YMVE 57
Query: 675 VQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ L H NIVK + + +++ EF G++ A++
Sbjct: 58 IDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVM 98
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
+G G +G VY+A + + E VA+K+ + ++ + EV L E++HRNI++
Sbjct: 42 LGEGTYGEVYKAIDTVTNETVAIKRIR--LEHEEEGVPGTAIREVSLLKELQHRNIIELK 99
Query: 691 GFCSHAQHSFLVYEFLE 707
H L++E+ E
Sbjct: 100 SVIHHNHRLHLIFEYAE 116
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + K ++ + + EV+ + +RH
Sbjct: 13 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 72
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ A +L+ E+ G++
Sbjct: 73 PNILRLYGYFHDATRVYLILEYAPLGTV 100
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 647 SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--AQHSFLVYE 704
+GE VAVK + IAD K+ E++ L + H NIVK+ G C+ L+ E
Sbjct: 49 TGEQVAVKSLKPESGGNHIADLKK---EIEILRNLYHENIVKYKGICTEDGGNGIKLIME 105
Query: 705 FLERGSLAAIL 715
FL GSL L
Sbjct: 106 FLPSGSLKEYL 116
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 647 SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--AQHSFLVYE 704
+GE VAVK + IAD K+ E++ L + H NIVK+ G C+ L+ E
Sbjct: 37 TGEQVAVKSLKPESGGNHIADLKK---EIEILRNLYHENIVKYKGICTEDGGNGIKLIME 93
Query: 705 FLERGSLAAIL 715
FL GSL L
Sbjct: 94 FLPSGSLKEYL 104
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 622 ETNDFDAEYCIGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQA 677
E + E IG+G G V R +P VA+K + Q +++FL+E
Sbjct: 47 EASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQ---RRDFLSEASI 103
Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ + H NI++ G + + + +V E++E GSL L
Sbjct: 104 MGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFL 141
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 14 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 71
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+E +++
Sbjct: 72 DVIHTENKLYLVFEHVDQ 89
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 30/241 (12%)
Query: 183 SLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSI-PPSFGNSMLTW 241
+L ++ ++ N FLF + + SV N+K L + D + PPS S T+
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALY---SVFAEMNIKMLSISDTPFIHMVCPPS--PSSFTF 357
Query: 242 LTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNI 301
L + N FT + L+ I+ N L+N +V L N++
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRN--------GLKN---FFKVALMTKNMSS-- 404
Query: 302 SEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQA 361
E L + N S N+ + + W + + LN+S N +TG + R + +++
Sbjct: 405 LETLDVSLN------SLNSHAYDRTCAWAE--SILVLNLSSNMLTGSVFRCLP--PKVKV 454
Query: 362 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSV 421
LDL N I+ IPK++ L +L +L + NQL L L+Y+ N ++ +
Sbjct: 455 LDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513
Query: 422 P 422
P
Sbjct: 514 P 514
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 67 LRDFSFSSFPQLVHLDLSLNGFFGTIP--SQIGNLTKLSYISLDS 109
L++ S L HLDLS N F +P + GNLTKL+++ L +
Sbjct: 112 LQNISCCPMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSA 155
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 47 CNDAGRVTNISLRNTGLSGTLR-DFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTK-LSY 104
C+ R+ + L+ GL + + L LD+SLN + + +
Sbjct: 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432
Query: 105 ISLDSNQLSGKI----PAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHL 160
++L SN L+G + P +V KVL N + SIP +V L +++EL + SN L
Sbjct: 433 LNLSSNMLTGSVFRCLPPKV------KVLDLHNNRI-MSIPKDVTHLQALQELNVASNQL 485
Query: 161 NGSLPPFLGNLSNIVRLYINNN 182
L+++ +++++N
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDN 507
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G V+ + + VA+K + + +F+ E + + ++ H +V+ YG
Sbjct: 35 IGSGQFGLVHLGYWLNKDKVAIKTIK-----EGSMSEDDFIEEAEVMMKLSHPKLVQLYG 89
Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
C LV+EF+E G L+ L
Sbjct: 90 VCLEQAPICLVFEFMEHGCLSDYL 113
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 620 VRETNDFDAEYCIGNGGHGSVYRAELPSGEV---VAVKKFHSSIPCDQIADQKEFLTEVQ 676
V + ND + IG G G V +A + + A+K+ D D ++F E++
Sbjct: 18 VLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELE 74
Query: 677 ALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
L ++ H NI+ G C H + +L E+ G+L L
Sbjct: 75 VLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFL 114
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 620 VRETNDFDAEYCIGNGGHGSVYRAELPSGEV---VAVKKFHSSIPCDQIADQKEFLTEVQ 676
V + ND + IG G G V +A + + A+K+ D D ++F E++
Sbjct: 21 VLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELE 77
Query: 677 ALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
L ++ H NI+ G C H + +L E+ G+L L
Sbjct: 78 VLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFL 117
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 620 VRETNDFDAEYCIGNGGHGSVYRAELPSGEV---VAVKKFHSSIPCDQIADQKEFLTEVQ 676
V + ND + IG G G V +A + + A+K+ D D ++F E++
Sbjct: 11 VLDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELE 67
Query: 677 ALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
L ++ H NI+ G C H + +L E+ G+L L
Sbjct: 68 VLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFL 107
>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 292
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G+V++A+ + E+VA+K+ + D L E+ L E++H+NIV+ +
Sbjct: 10 IGEGTYGTVFKAKNRETHEIVALKRVR--LDDDDEGVPSSALREICLLKELKHKNIVRLH 67
Query: 691 GFCSHAQHSFLVYEFLER 708
+ LV+EF ++
Sbjct: 68 DVLHSDKKLTLVFEFCDQ 85
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
+G+G G V + VAVK + EF E Q + ++ H +VKFYG
Sbjct: 16 LGSGQFGVVKLGKWKGQYDVAVKMIKEGS-----MSEDEFFQEAQTMMKLSHPKLVKFYG 70
Query: 692 FCSHAQHSFLVYEFLERGSL 711
CS ++V E++ G L
Sbjct: 71 VCSKEYPIYIVTEYISNGCL 90
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 622 ETNDFDAEYCIGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQA 677
E + E IG+G G V R +P VA+K + Q +++FL+E
Sbjct: 47 EASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQ---RRDFLSEASI 103
Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ + H NI++ G + + + +V E++E GSL L
Sbjct: 104 MGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFL 141
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G+V++A+ + E+VA+K+ + D L E+ L E++H+NIV+ +
Sbjct: 10 IGEGTYGTVFKAKNRETHEIVALKRVR--LDDDDEGVPSSALREICLLKELKHKNIVRLH 67
Query: 691 GFCSHAQHSFLVYEFLER 708
+ LV+EF ++
Sbjct: 68 DVLHSDKKLTLVFEFCDQ 85
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G V++ +G++VA+KKF S D +K L E++ L +++H N+V
Sbjct: 11 IGEGSYGVVFKCRNRDTGQIVAIKKFLESE--DDPVIKKIALREIRMLKQLKHPNLVNLL 68
Query: 691 GFCSHAQHSFLVYEFLERGSLAAI 714
+ LV+E+ + L +
Sbjct: 69 EVFRRKRRLHLVFEYCDHTVLHEL 92
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 278 PESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGT 337
P L N SL+ L+ N+L SEA PNL ++DLS N+ + + L
Sbjct: 60 PTRLTNLHSLL---LSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116
Query: 338 LNVSMNNITGGIPREIGNMSQLQALDLSLNHIVG---EIPKELGKLNSLTKLILRGNQLT 394
L + N+I +M+QLQ L LS N I E+ K+ KL L L L N+L
Sbjct: 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176
Query: 395 GRLPTEIGSL 404
T++ L
Sbjct: 177 KLPLTDLQKL 186
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 277 IPESLRNCTSLIRVRLNGNNLTGNISEAL-GLYPNLTFIDLSRNNFYGEISSNWGKCPKL 335
+P+SL + T+L+ L+ NNL+ +E NL + LS N+ S + P L
Sbjct: 33 VPQSLPSYTALLD--LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 336 GTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTG 395
L++S N++ ++ L+ L L NHIV + L KL L NQ++
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS- 149
Query: 396 RLPTEI----GSLIELEYLDFSANKF 417
R P E+ L +L LD S+NK
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 42/88 (47%)
Query: 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
DF+ +G G G+VY A + + + K ++ + + EV+ + +RH
Sbjct: 8 EDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NI++ YG+ + +L+ E+ G++
Sbjct: 68 PNILRLYGYFHDSTRVYLILEYAPLGTV 95
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G V+ + + VA+K + +++F+ E + + ++ H +V+ YG
Sbjct: 16 IGSGQFGLVHLGYWLNKDKVAIKTIR-----EGAMSEEDFIEEAEVMMKLSHPKLVQLYG 70
Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
C LV EF+E G L+ L
Sbjct: 71 VCLEQAPICLVTEFMEHGCLSDYL 94
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 621 RETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALT 679
R DF+ C+G GG G V+ A+ + A+K+ +P ++A +K + EV+AL
Sbjct: 3 RYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIR--LPNRELAREK-VMREVKALA 59
Query: 680 EIRHRNIVKFY 690
++ H IV+++
Sbjct: 60 KLEHPGIVRYF 70
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 622 ETNDFDAEYCIGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQA 677
+ + + +G G G V R +LPS + VA+K Q +++FL E
Sbjct: 31 DATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASI 87
Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ + H NI++ G + ++ +V E++E GSL + L
Sbjct: 88 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 125
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 33 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 84
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 85 YFFYSSGEKKDEVY 98
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 56 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 107
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 108 YFFYSSGEKKDEVY 121
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 113
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 114 YFFYSSGEKKDEVY 127
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 66 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 117
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 118 YFFYSSGEKKDEVY 131
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 617 DEIVRE-TNDFDA-----EYCIGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIA 666
++ VRE + DA E IG G G V R ++P VA+K + Q
Sbjct: 1 NQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQ-- 58
Query: 667 DQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+++FL+E + + H NI+ G + + ++ E++E GSL A L
Sbjct: 59 -RRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFL 106
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 617 DEIVRE-TNDFDA-----EYCIGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIA 666
++ VRE + DA E IG G G V R ++P VA+K + Q
Sbjct: 16 NQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQ-- 73
Query: 667 DQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+++FL+E + + H NI+ G + + ++ E++E GSL A L
Sbjct: 74 -RRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFL 121
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 40 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 91
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 92 YFFYSSGEKKDEVY 105
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 629 EYCIGNGGHGSVYRAELPSG----EV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
+ IG G G VY+ L + EV VA+K + Q D FL E + + H
Sbjct: 49 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVD---FLGEAGIMGQFSH 105
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
NI++ G S + ++ E++E G+L L
Sbjct: 106 HNIIRLEGVISKYKPMMIITEYMENGALDKFL 137
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 113
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 114 YFFYSSGEKKDEVY 127
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 47 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 98
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 99 YFFYSSGEKKDEVY 112
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 107 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 158
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 159 YFFYSSGEKKDEVY 172
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 64 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 115
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 116 YFFYSSGEKKDEVY 129
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 36 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 87
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 88 YFFYSSGEKKDEVY 101
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 41 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 92
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 93 YFFYSSGEKKDEVY 106
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 40 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 91
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 92 YFFYSSGEKKDEVY 105
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
++DF + +G G +G V A P+GE+VA+KK P D+ L E++ L
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIE---PFDKPLFALRTLREIKILKHF 66
Query: 682 RHRNIVKFY 690
+H NI+ +
Sbjct: 67 KHENIITIF 75
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 621 RETNDFDAEYCIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALT 679
R DF+ C+G GG G V+ A+ + A+K+ +P ++A +K + EV+AL
Sbjct: 2 RYLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIR--LPNRELAREK-VMREVKALA 58
Query: 680 EIRHRNIVKFY 690
++ H IV+++
Sbjct: 59 KLEHPGIVRYF 69
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 632 IGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G G G V R +LPS + VA+K Q +++FL E + + H NI+
Sbjct: 24 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 80
Query: 688 KFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ G + ++ +V E++E GSL + L
Sbjct: 81 RLEGVVTKSKPVMIVTEYMENGSLDSFL 108
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
++DF + +G G +G V A P+GE+VA+KK P D+ L E++ L
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIE---PFDKPLFALRTLREIKILKHF 66
Query: 682 RHRNIVKFY 690
+H NI+ +
Sbjct: 67 KHENIITIF 75
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 29 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 80
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 81 YFFYSSGEKKDEVY 94
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G+G G VY ++ PS VAVK C + D+ +FL E ++++ H+N
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSE-QDELDFLMEALIISKLNHQN 95
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IV+ G + F++ E + G L + L
Sbjct: 96 IVRCIGVSLQSLPRFILLELMAGGDLKSFL 125
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 629 EYCIGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
+ +G G G V R +LPS + VA+K Q +++FL E + + H
Sbjct: 50 DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHP 106
Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
NI++ G + ++ +V E++E GSL + L
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 137
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G +G VY+A +GEVVA+KK + + + E+ L E+ H NIVK
Sbjct: 10 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELNHPNIVKLL 67
Query: 691 GFCSHAQHSFLVYEFLER 708
+LV+E + +
Sbjct: 68 DVIHTENKLYLVFEHVHQ 85
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 629 EYCIGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
E IG G G V R ++P VA+K + Q +++FL+E + + H
Sbjct: 13 EKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQ---RRDFLSEASIMGQFDHP 69
Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
NI+ G + + ++ E++E GSL A L
Sbjct: 70 NIIHLEGVVTKCKPVMIITEYMENGSLDAFL 100
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 629 EYCIGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
+ +G G G V R +LPS + VA+K Q +++FL E + + H
Sbjct: 50 DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHP 106
Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
NI++ G + ++ +V E++E GSL + L
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 137
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 79
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 80 YFFYSSGEKKDEVY 93
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 632 IGNGGHGSVYRAEL--PSGEVV--AVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G+G G V R E PSG+ V AVK + Q +F+ EV A+ + HRN++
Sbjct: 26 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDV-LSQPEAMDDFIREVNAMHSLDHRNLI 84
Query: 688 KFYG 691
+ YG
Sbjct: 85 RLYG 88
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
++DF + +G G +G V A P+GE+VA+KK P D+ L E++ L
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIE---PFDKPLFALRTLREIKILKHF 66
Query: 682 RHRNIVKFY 690
+H NI+ +
Sbjct: 67 KHENIITIF 75
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 32 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 83
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 84 YFFYSSGEKKDEVY 97
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 79
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 80 YFFYSSGEKKDEVY 93
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 629 EYCIGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
+ +G G G V R +LPS + VA+K Q +++FL E + + H
Sbjct: 50 DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHP 106
Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
NI++ G + ++ +V E++E GSL + L
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 137
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 632 IGNGGHGSVYRAEL--PSGEVV--AVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G+G G V R E PSG+ V AVK + Q +F+ EV A+ + HRN++
Sbjct: 16 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDV-LSQPEAMDDFIREVNAMHSLDHRNLI 74
Query: 688 KFYG 691
+ YG
Sbjct: 75 RLYG 78
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G+G G VY ++ PS VAVK C + D+ +FL E ++++ H+N
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSE-QDELDFLMEALIISKLNHQN 109
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IV+ G + F++ E + G L + L
Sbjct: 110 IVRCIGVSLQSLPRFILLELMAGGDLKSFL 139
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 632 IGNGGHGSVYRAEL--PSGEVV--AVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G+G G V R E PSG+ V AVK + Q +F+ EV A+ + HRN++
Sbjct: 20 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDV-LSQPEAMDDFIREVNAMHSLDHRNLI 78
Query: 688 KFYG 691
+ YG
Sbjct: 79 RLYG 82
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 632 IGNGGHGSVYRAEL--PSGEVV--AVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G+G G V R E PSG+ V AVK + Q +F+ EV A+ + HRN++
Sbjct: 26 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDV-LSQPEAMDDFIREVNAMHSLDHRNLI 84
Query: 688 KFYG 691
+ YG
Sbjct: 85 RLYG 88
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKF- 689
IGNG G VY+A+L SGE+VA+KK + D++ E+Q + ++ H NIV+
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 79
Query: 690 YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 80 YFFYSSGEKKDEVY 93
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 632 IGNGGHGSVYRAEL--PSGEVV--AVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G+G G V R E PSG+ V AVK + Q +F+ EV A+ + HRN++
Sbjct: 16 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDV-LSQPEAMDDFIREVNAMHSLDHRNLI 74
Query: 688 KFYG 691
+ YG
Sbjct: 75 RLYG 78
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 632 IGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G G G V R +LPS + VA+K Q +++FL E + + H NI+
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 109
Query: 688 KFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ G + ++ +V E++E GSL + L
Sbjct: 110 RLEGVVTKSKPVMIVTEYMENGSLDSFL 137
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 632 IGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G G G V R +LPS + VA+K Q +++FL E + + H NI+
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 109
Query: 688 KFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ G + ++ +V E++E GSL + L
Sbjct: 110 RLEGVVTKSKPVMIVTEYMENGSLDSFL 137
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 629 EYCIGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
+ +G G G V R +LPS + VA+K Q +++FL E + + H
Sbjct: 50 DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHP 106
Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
NI++ G + ++ +V E++E GSL + L
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 137
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 285 TSLIRVRLNGNNLTGN-ISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN 343
+SL +++ GN+ N + + NLTF+DLS+ + + L LN+S N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 344 NITGGIPREIGNMSQLQALDLSLNHIVGEIPKEL 377
N ++ LQ LD SLNHI+ +EL
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 475 SLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP-------VPNSTAFRN 525
SL SL+ LN+SHNN L ++ ++ L ++D S N + P+S AF N
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 632 IGNGGHGSVYRAEL--PSGEVV--AVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G+G G V R E PSG+ V AVK + Q +F+ EV A+ + HRN++
Sbjct: 16 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDV-LSQPEAMDDFIREVNAMHSLDHRNLI 74
Query: 688 KFYG 691
+ YG
Sbjct: 75 RLYG 78
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 632 IGNGGHGSVYRAEL--PSGEVV--AVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G+G G V R E PSG+ V AVK + Q +F+ EV A+ + HRN++
Sbjct: 20 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDV-LSQPEAMDDFIREVNAMHSLDHRNLI 78
Query: 688 KFYG 691
+ YG
Sbjct: 79 RLYG 82
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 632 IGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G G G V R +LPS + VA+K Q +++FL E + + H NI+
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 109
Query: 688 KFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ G + ++ +V E++E GSL + L
Sbjct: 110 RLEGVVTKSKPVMIVTEYMENGSLDSFL 137
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 632 IGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G G G V R +LPS + VA+K Q +++FL E + + H NI+
Sbjct: 51 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 107
Query: 688 KFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ G + ++ +V E++E GSL + L
Sbjct: 108 RLEGVVTKSKPVMIVTEYMENGSLDSFL 135
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 629 EYCIGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
E IG G G V R +LP VA+K Q +++FL E + + H
Sbjct: 48 ERVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQ---RRDFLCEASIMGQFDHP 104
Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
N+V G + + +V EF+E G+L A L
Sbjct: 105 NVVHLEGVVTRGKPVMIVIEFMENGALDAFL 135
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 285 TSLIRVRLNGNNLTGN-ISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN 343
+SL +++ GN+ N + + NLTF+DLS+ + + L LN+S N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 344 NITGGIPREIGNMSQLQALDLSLNHIVGEIPKEL 377
N ++ LQ LD SLNHI+ +EL
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN 367
+P L +DLSR + L TL ++ N I +S LQ L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 368 HIVGEIPKELGKLNSLTKLILRGNQLTG-RLPTEIGSLIELEYLDFSANK 416
++ +G L +L +L + N + +LP +L LE+LD S+NK
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 95/253 (37%), Gaps = 42/253 (16%)
Query: 286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRN--NFYGEISSNWGKCPKLGTLNVSMN 343
SL R+ N GN + L P+L F+DLSRN +F G S + L L++S N
Sbjct: 326 SLKRLTFTSNK-GGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Query: 344 NITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI-LRGNQLTGRLPTE-- 400
+ +G + QL+ LD H + E SL LI L + R+
Sbjct: 384 GVITMSSNFLG-LEQLEHLDFQ--HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 401 IGSLIELEYLDFSANKFN-NSVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXXXXXXSELD 459
L LE L + N F N +P+ LD
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF------------------------LD 476
Query: 460 ASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP--- 516
S P SL SL+ LN+SHNN L ++ ++ L ++D S N +
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536
Query: 517 ----VPNSTAFRN 525
P+S AF N
Sbjct: 537 ELQHFPSSLAFLN 549
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 471 FQICSLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDISDNQLQG 515
F I LK+L++LN++HN + +P F + L +D+S N++Q
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Query: 32 NVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGT 91
N++ + +Y I N N+ L L L +SF SFP+L LDLS
Sbjct: 9 NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 92 IPSQIGNLTKLSYISLDSNQL-SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSI 150
+L+ LS + L N + S + A GL + K+++ + N P + L ++
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTL 126
Query: 151 EELFLYSNHLNG-SLPPFLGNLSNIVRLYINNNSLSGSILTNI 192
+EL + N + LP + NL+N+ L +++N + T++
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 285 TSLIRVRLNGNNLTGN-ISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN 343
+SL +++ GN+ N + + NLTF+DLS+ + + L LN+S N
Sbjct: 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Query: 344 NITGGIPREIGNMSQLQALDLSLNHIVGEIPKEL 377
N ++ LQ LD SLNHI+ +EL
Sbjct: 529 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN 367
+P L +DLSR + L TL ++ N I +S LQ L
Sbjct: 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134
Query: 368 HIVGEIPKELGKLNSLTKLILRGNQLTG-RLPTEIGSLIELEYLDFSANK 416
++ +G L +L +L + N + +LP +L LE+LD S+NK
Sbjct: 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 7/183 (3%)
Query: 15 LQSHNQSLLPSW---TNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFS 71
L + N S+ SW N++ + +Y I N N+ L L L +S
Sbjct: 13 LAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH-LGSYS 71
Query: 72 FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL-SGKIPAEVGLLTHLKVLS 130
F SFP+L LDLS +L+ LS + L N + S + A GL + K+++
Sbjct: 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131
Query: 131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNG-SLPPFLGNLSNIVRLYINNNSLSGSIL 189
+ N P + L +++EL + N + LP + NL+N+ L +++N +
Sbjct: 132 VETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190
Query: 190 TNI 192
T++
Sbjct: 191 TDL 193
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 95/253 (37%), Gaps = 42/253 (16%)
Query: 286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRN--NFYGEISSNWGKCPKLGTLNVSMN 343
SL R+ N GN + L P+L F+DLSRN +F G S + L L++S N
Sbjct: 350 SLKRLTFTSNK-GGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN 407
Query: 344 NITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI-LRGNQLTGRLPTE-- 400
+ +G + QL+ LD H + E SL LI L + R+
Sbjct: 408 GVITMSSNFLG-LEQLEHLDF--QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 464
Query: 401 IGSLIELEYLDFSANKFN-NSVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXXXXXXSELD 459
L LE L + N F N +P+ LD
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF------------------------LD 500
Query: 460 ASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP--- 516
S P SL SL+ LN+SHNN L ++ ++ L ++D S N +
Sbjct: 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560
Query: 517 ----VPNSTAFRN 525
P+S AF N
Sbjct: 561 ELQHFPSSLAFLN 573
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 471 FQICSLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDISDNQLQG 515
F I LK+L++LN++HN + +P F + L +D+S N++Q
Sbjct: 142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 40 CAWYGISCNDAGRV---TNISLRNTGL---SGTLRDFSFSSFPQLVHL-DLSLNG-FFGT 91
C+ + C GR T I + T L + +L+ F +L L L L G +
Sbjct: 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS 66
Query: 92 IPSQIGN-LTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLSS 149
+P+ + N LT L+Y++L +NQL LT LK L+ N+L S+P V +L+
Sbjct: 67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQ 125
Query: 150 IEELFLYSNHLNGSLPPFLGNLSNIVRLYINNN 182
+++L LY N L L+++ +++++N
Sbjct: 126 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 72 FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF 131
F+ L +L+LS N LT+L ++L++NQL LT LK L
Sbjct: 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131
Query: 132 QFNELDGSIPPEVC-QLSSIEELFLYSNHLNGSLP 165
N+L S+P V +L+S++ ++L+ N + + P
Sbjct: 132 YQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-------VAVKKFHSSIPCDQIADQKE 670
E+ RE E +G G G VY + G V VA+K + + + ++ E
Sbjct: 6 EVAREKITMSRE--LGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAA---SMRERIE 59
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
FL E + E ++V+ G S Q + ++ E + RG L + L
Sbjct: 60 FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 104
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G+G G VY ++ PS VAVK C + D+ +FL E +++ H+N
Sbjct: 79 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSE-QDELDFLMEALIISKFNHQN 135
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IV+ G + F++ E + G L + L
Sbjct: 136 IVRCIGVSLQSLPRFILLELMAGGDLKSFL 165
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G+G G VY ++ PS VAVK C + D+ +FL E +++ H+N
Sbjct: 38 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSE-QDELDFLMEALIISKFNHQN 94
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IV+ G + F++ E + G L + L
Sbjct: 95 IVRCIGVSLQSLPRFILMELMAGGDLKSFL 124
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G+G G VY ++ PS VAVK C + D+ +FL E +++ H+N
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSE-QDELDFLMEALIISKFNHQN 109
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IV+ G + F++ E + G L + L
Sbjct: 110 IVRCIGVSLQSLPRFILMELMAGGDLKSFL 139
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G+G G VY ++ PS VAVK C + D+ +FL E +++ H+N
Sbjct: 45 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSE-QDELDFLMEALIISKFNHQN 101
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IV+ G + F++ E + G L + L
Sbjct: 102 IVRCIGVSLQSLPRFILLELMAGGDLKSFL 131
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G+G G VY ++ PS VAVK C + D+ +FL E +++ H+N
Sbjct: 55 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSE-QDELDFLMEALIISKFNHQN 111
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IV+ G + F++ E + G L + L
Sbjct: 112 IVRCIGVSLQSLPRFILLELMAGGDLKSFL 141
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G+G G VY ++ PS VAVK C + D+ +FL E +++ H+N
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSE-QDELDFLMEALIISKFNHQN 95
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IV+ G + F++ E + G L + L
Sbjct: 96 IVRCIGVSLQSLPRFILLELMAGGDLKSFL 125
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G+G G VY ++ PS VAVK C + D+ +FL E +++ H+N
Sbjct: 30 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSE-QDELDFLMEALIISKFNHQN 86
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IV+ G + F++ E + G L + L
Sbjct: 87 IVRCIGVSLQSLPRFILLELMAGGDLKSFL 116
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
++ + + +G G G V + +G+ AVK S Q D++ L EVQ L ++
Sbjct: 49 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVI-SKRQVKQKTDKESLLREVQLLKQL 107
Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
H NI+K Y F + +LV E G L
Sbjct: 108 DHPNIMKLYEFFEDKGYFYLVGEVYTGGEL 137
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
++ + + +G G G V + +G+ AVK S Q D++ L EVQ L ++
Sbjct: 48 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVI-SKRQVKQKTDKESLLREVQLLKQL 106
Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
H NI+K Y F + +LV E G L
Sbjct: 107 DHPNIMKLYEFFEDKGYFYLVGEVYTGGEL 136
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G+G G VY ++ PS VAVK C + D+ +FL E +++ H+N
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSE-QDELDFLMEALIISKFNHQN 95
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IV+ G + F++ E + G L + L
Sbjct: 96 IVRCIGVSLQSLPRFILLELMAGGDLKSFL 125
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 139/356 (39%), Gaps = 51/356 (14%)
Query: 99 LTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPE--VCQLSSIEELFLY 156
L+ L + LD NQ L +L+VL+ LDG++ L+S+E L L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 157 SNHLNGSLPP--FLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLT 214
N++ P FL N+ R ++ + +K + E DL L
Sbjct: 138 DNNIKKIQPASFFL----NMRRFHV--------LDLTFNKVKSICEEDLLNFQGKHFTLL 185
Query: 215 NLKSLGL--MDNHLSG--SIPPSFGNSMLTWLTLSGNHFTGYLPH---NICRGGLLEAFI 267
L S+ L M+ + G F N+ +T L LSGN F + + G +++ I
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245
Query: 268 VSENH------------------FQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYP 309
+S ++ F+G ++ C L+ + + + +
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD------LSKSKIFALLKSVFSHFT 299
Query: 310 NLTFIDLSRNNFYGEISSN--WGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN 367
+L + L++N +I N WG L LN+S N + R N+ +L+ LDLS N
Sbjct: 300 DLEQLTLAQNEI-NKIDDNAFWG-LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 368 HIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPE 423
HI + L +L +L L NQL L L+ + N ++ S P
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G+G G VY ++ PS VAVK C + D+ +FL E +++ H+N
Sbjct: 56 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSE-QDELDFLMEALIISKFNHQN 112
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IV+ G + F++ E + G L + L
Sbjct: 113 IVRCIGVSLQSLPRFILLELMAGGDLKSFL 142
>pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|B Chain B, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|C Chain C, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|D Chain D, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|E Chain E, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|F Chain F, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|G Chain G, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|H Chain H, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|I Chain I, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|J Chain J, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|K Chain K, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|L Chain L, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|M Chain M, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|N Chain N, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|O Chain O, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|P Chain P, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|Q Chain Q, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|R Chain R, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|S Chain S, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|T Chain T, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|U Chain U, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|V Chain V, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|W Chain W, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|X Chain X, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
Length = 305
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 23/101 (22%)
Query: 631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFL--TEVQALTEIRHRNIVK 688
C+G G +G V+R L GE VAVK F S D++ + TE+ +RH NI+
Sbjct: 15 CVGKGRYGEVWRG-LWHGESVAVKIFSSR-------DEQSWFRETEIYNTVLLRHDNILG 66
Query: 689 FYG-------------FCSHAQHSFLVYEFLERGSLAAILS 716
F +H +Y+FL+R +L L+
Sbjct: 67 FIASDMTSRNSSTQLWLITHYHEHGSLYDFLQRQTLEPHLA 107
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G+G G VY ++ PS VAVK C + D+ +FL E +++ H+N
Sbjct: 38 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSE-QDELDFLMEALIISKFNHQN 94
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IV+ G + F++ E + G L + L
Sbjct: 95 IVRCIGVSLQSLPRFILLELMAGGDLKSFL 124
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 623 TNDFDAEYCIGNGGHGSVYR-AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
++ + + +G G G V + +G+ AVK S Q D++ L EVQ L ++
Sbjct: 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVI-SKRQVKQKTDKESLLREVQLLKQL 83
Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
H NI+K Y F + +LV E G L
Sbjct: 84 DHPNIMKLYEFFEDKGYFYLVGEVYTGGEL 113
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-------VAVKKFHSSIPCDQIADQKE 670
E+ RE E +G G G VY + G V VA+K + + + ++ E
Sbjct: 14 EVAREKITMSRE--LGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAA---SMRERIE 67
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
FL E + E ++V+ G S Q + ++ E + RG L + L
Sbjct: 68 FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 112
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-------VAVKKFHSSIPCDQIADQKE 670
E+ RE E +G G G VY + G V VA+K + + + ++ E
Sbjct: 15 EVAREKITMSRE--LGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAA---SMRERIE 68
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
FL E + E ++V+ G S Q + ++ E + RG L + L
Sbjct: 69 FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 113
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-------VAVKKFHSSIPCDQIADQKE 670
E+ RE E +G G G VY + G V VA+K + + + ++ E
Sbjct: 8 EVAREKITMSRE--LGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAA---SMRERIE 61
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
FL E + E ++V+ G S Q + ++ E + RG L + L
Sbjct: 62 FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 106
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 629 EYCIGNGGHGSVYRA--ELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
E IG G G V +LP VA+K S Q +++FL+E + + H
Sbjct: 38 EQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQ---RRDFLSEASIMGQFDHP 94
Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
N++ G + + ++ EF+E GSL + L
Sbjct: 95 NVIHLEGVVTKSTPVMIITEFMENGSLDSFL 125
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 102/407 (25%), Positives = 151/407 (37%), Gaps = 76/407 (18%)
Query: 145 CQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFEL--- 201
CQ++ I E S+H +L L+ +++ SL+G +LK LF +
Sbjct: 64 CQINWIHEDTFQSHHQLSTLV-----LTGNPLIFMAETSLNGP-----KSLKHLFLIQTG 113
Query: 202 --DLSFLPLSVGNLTNLKSLGLMDNHLSG-SIPPSFGNSMLTWLTLSGNHFTGYLPHNIC 258
+L F+P V NL NL+SL L NH+S P F L L N H I
Sbjct: 114 ISNLEFIP--VHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAI-----HYIS 166
Query: 259 RGGL--LEAFI-------------VSENHFQGTIPESLR-NCTSLIRVRLNGNNLTGNIS 302
R + LE I + F TI +SL T + V NG + S
Sbjct: 167 REDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQS 226
Query: 303 EALGLYPNLTFIDLSRNNFYG--EISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQ 360
LG + ++ D+S G E+S + +LN+ + + +QLQ
Sbjct: 227 LWLGTFEDIDDEDISSAMLKGLCEMS--------VESLNLQEHRFSDISSTTFQCFTQLQ 278
Query: 361 ALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNS 420
LDL+ H+ G +P + LN L KL+L N + L +L N
Sbjct: 279 ELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN----- 332
Query: 421 VPEXXXXXXXXXXXXXXXXQFXXXXXXXXXXXXXXSELDASHNLFGGE--IPFQICSLKS 478
+ LD SHN Q+ +L
Sbjct: 333 ------------------VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSH 374
Query: 479 LEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRN 525
L+ LNLSHN GL F+ L ++D++ +L P S F+N
Sbjct: 375 LQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQS-PFQN 420
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 22/192 (11%)
Query: 214 TNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGY----------LPHNICRGGLL 263
T L+ L L HL G G ++L L LS NHF L H RG
Sbjct: 275 TQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN-- 332
Query: 264 EAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGL--YPNLTFIDLSRNNF 321
V + H E L N +L L+ N++ + +L L +L ++LS N
Sbjct: 333 ----VKKLHLGVGCLEKLGNLQTL---DLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEP 385
Query: 322 YGEISSNWGKCPKLGTLNVSMNNITGGIPRE-IGNMSQLQALDLSLNHIVGEIPKELGKL 380
G S + +CP+L L+++ + P+ N+ LQ L+L+ + L L
Sbjct: 386 LGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGL 445
Query: 381 NSLTKLILRGNQ 392
L L L+GN
Sbjct: 446 PVLRHLNLKGNH 457
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-------VAVKKFHSSIPCDQIADQKE 670
E+ RE E +G G G VY + G V VA+K + + + ++ E
Sbjct: 12 EVAREKITMSRE--LGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAA---SMRERIE 65
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
FL E + E ++V+ G S Q + ++ E + RG L + L
Sbjct: 66 FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 110
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-------VAVKKFHSSIPCDQIADQKE 670
E+ RE E +G G G VY + G V VA+K + + + ++ E
Sbjct: 8 EVAREKITMSRE--LGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAA---SMRERIE 61
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
FL E + E ++V+ G S Q + ++ E + RG L + L
Sbjct: 62 FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 106
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 629 EYCIGNGGHGSVYRA--ELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
E IG G G V +LP VA+K S Q +++FL+E + + H
Sbjct: 12 EQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQ---RRDFLSEASIMGQFDHP 68
Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
N++ G + + ++ EF+E GSL + L
Sbjct: 69 NVIHLEGVVTKSTPVMIITEFMENGSLDSFL 99
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-------VAVKKFHSSIPCDQIADQKE 670
E+ RE E +G G G VY + G V VA+K + + + ++ E
Sbjct: 14 EVAREKITMSRE--LGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAA---SMRERIE 67
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
FL E + E ++V+ G S Q + ++ E + RG L + L
Sbjct: 68 FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 112
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-------VAVKKFHSSIPCDQIADQKE 670
E+ RE E +G G G VY + G V VA+K + + + ++ E
Sbjct: 11 EVAREKITMSRE--LGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAA---SMRERIE 64
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
FL E + E ++V+ G S Q + ++ E + RG L + L
Sbjct: 65 FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 109
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-------VAVKKFHSSIPCDQIADQKE 670
E+ RE E +G G G VY + G V VA+K + + + ++ E
Sbjct: 43 EVAREKITMSRE--LGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAA---SMRERIE 96
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
FL E + E ++V+ G S Q + ++ E + RG L + L
Sbjct: 97 FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 141
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G+VY+ + VAVK + + P Q + F EV L + RH NI+ F G
Sbjct: 21 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 76
Query: 692 FCSHAQHSFLVYEFLERGSL 711
+ + Q + +V ++ E SL
Sbjct: 77 YSTKPQLA-IVTQWCEGSSL 95
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-------VAVKKFHSSIPCDQIADQKE 670
E+ RE E +G G G VY + G V VA+K + + + ++ E
Sbjct: 15 EVAREKITMSRE--LGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAA---SMRERIE 68
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
FL E + E ++V+ G S Q + ++ E + RG L + L
Sbjct: 69 FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 113
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-------VAVKKFHSSIPCDQIADQKE 670
E+ RE E +G G G VY + G V VA+K + + + ++ E
Sbjct: 21 EVAREKITMSRE--LGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAA---SMRERIE 74
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
FL E + E ++V+ G S Q + ++ E + RG L + L
Sbjct: 75 FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 119
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G+G G VY ++ PS VAVK C + D+ +FL E +++ H+N
Sbjct: 65 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV--CSE-QDELDFLMEALIISKFNHQN 121
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IV+ G + F++ E + G L + L
Sbjct: 122 IVRCIGVSLQSLPRFILLELMAGGDLKSFL 151
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGEV-------VAVKKFHSSIPCDQIADQKE 670
E+ RE E +G G G VY + G V VA+K + + + ++ E
Sbjct: 21 EVAREKITMSRE--LGQGSFGMVYEG-VAKGVVKDEPETRVAIKTVNEAA---SMRERIE 74
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
FL E + E ++V+ G S Q + ++ E + RG L + L
Sbjct: 75 FLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 119
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKF---HSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G G +VY+A + + ++VA+KK H S D I + L E++ L E+ H NI+
Sbjct: 18 LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGI--NRTALREIKLLQELSHPNII 75
Query: 688 KFYGFCSHAQHSFLVYEFLE 707
H + LV++F+E
Sbjct: 76 GLLDAFGHKSNISLVFDFME 95
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G+VY+ + VAVK + + P Q + F EV L + RH NI+ F G
Sbjct: 16 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 71
Query: 692 FCSHAQHSFLVYEFLERGSL 711
+ + Q + +V ++ E SL
Sbjct: 72 YSTKPQLA-IVTQWCEGSSL 90
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G+VY+ + VAVK + + P Q + F EV L + RH NI+ F G
Sbjct: 16 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 71
Query: 692 FCSHAQHSFLVYEFLERGSL 711
+ + Q + +V ++ E SL
Sbjct: 72 YSTKPQLA-IVTQWCEGSSL 90
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
++ + + +G G G V + +G+ AVK S Q D++ L EVQ L ++
Sbjct: 31 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVI-SKRQVKQKTDKESLLREVQLLKQL 89
Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
H NI+K Y F + +LV E G L
Sbjct: 90 DHPNIMKLYEFFEDKGYFYLVGEVYTGGEL 119
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G+VY+ + VAVK + + P Q + F EV L + RH NI+ F G
Sbjct: 18 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 73
Query: 692 FCSHAQHSFLVYEFLERGSL 711
+ + Q + +V ++ E SL
Sbjct: 74 YSTKPQLA-IVTQWCEGSSL 92
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 631 CIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
+G G G V +A VAVK + ++ D L+E L ++ H
Sbjct: 30 TLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRD---LLSEFNVLKQVNHP 86
Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+++K YG CS L+ E+ + GSL L
Sbjct: 87 HVIKLYGACSQDGPLLLIVEYAKYGSLRGFL 117
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG G G V + G VAVK + A + FL E +T++RH N+V+ G
Sbjct: 20 IGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLG 72
Query: 692 FCSHAQHS-FLVYEFLERGSLAAIL 715
+ ++V E++ +GSL L
Sbjct: 73 VIVEEKGGLYIVTEYMAKGSLVDYL 97
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 631 CIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
+G G G V +A VAVK + ++ D L+E L ++ H
Sbjct: 30 TLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRD---LLSEFNVLKQVNHP 86
Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+++K YG CS L+ E+ + GSL L
Sbjct: 87 HVIKLYGACSQDGPLLLIVEYAKYGSLRGFL 117
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G+VY+ + VAVK + + P Q + F EV L + RH NI+ F G
Sbjct: 21 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 76
Query: 692 FCSHAQHSFLVYEFLERGSL 711
+ + Q + +V ++ E SL
Sbjct: 77 YSTKPQLA-IVTQWCEGSSL 95
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G+VY+ + VAVK + + P Q + F EV L + RH NI+ F G
Sbjct: 44 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 99
Query: 692 FCSHAQHSFLVYEFLERGSL 711
+ + Q + +V ++ E SL
Sbjct: 100 YSTKPQLA-IVTQWCEGSSL 118
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 622 ETNDFDAEYCIGNGGHGSVYR-AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
+ +DF+ +G G G V++ + PSG V+A K H I + A + + + E+Q L E
Sbjct: 66 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHE 122
Query: 681 IRHRNIVKFYG-FCSHAQHSFLVYEFLERGSLAAILS 716
IV FYG F S + S + E ++ GSL +L
Sbjct: 123 CNSPYIVGFYGAFYSDGEIS-ICMEHMDGGSLDQVLK 158
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 631 CIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
+G G G V +A VAVK + ++ D L+E L ++ H
Sbjct: 30 TLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRD---LLSEFNVLKQVNHP 86
Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+++K YG CS L+ E+ + GSL L
Sbjct: 87 HVIKLYGACSQDGPLLLIVEYAKYGSLRGFL 117
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G+VY+ + VAVK + + P Q + F EV L + RH NI+ F G
Sbjct: 43 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 98
Query: 692 FCSHAQHSFLVYEFLERGSL 711
+ + Q + +V ++ E SL
Sbjct: 99 YSTKPQLA-IVTQWCEGSSL 117
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G+VY+ + VAVK + + P Q + F EV L + RH NI+ F G
Sbjct: 44 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 99
Query: 692 FCSHAQHSFLVYEFLERGSL 711
+ + Q + +V ++ E SL
Sbjct: 100 YSTKPQLA-IVTQWCEGSSL 118
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 622 ETNDFDAEYCIGNGGHGSVYR-AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
+ +DF+ +G G G V++ + PSG V+A K H I + A + + + E+Q L E
Sbjct: 4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHE 60
Query: 681 IRHRNIVKFYG-FCSHAQHSFLVYEFLERGSLAAILS 716
IV FYG F S + S + E ++ GSL +L
Sbjct: 61 CNSPYIVGFYGAFYSDGEIS-ICMEHMDGGSLDQVLK 96
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 622 ETNDFDAEYCIGNGGHGSVYR-AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
+ +DF+ +G G G V++ + PSG V+A K H I + A + + + E+Q L E
Sbjct: 4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHE 60
Query: 681 IRHRNIVKFYG-FCSHAQHSFLVYEFLERGSLAAILS 716
IV FYG F S + S + E ++ GSL +L
Sbjct: 61 CNSPYIVGFYGAFYSDGEIS-ICMEHMDGGSLDQVLK 96
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 622 ETNDFDAEYCIGNGGHGSVYR-AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
+ +DF+ +G G G V++ + PSG V+A K H I + A + + + E+Q L E
Sbjct: 4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHE 60
Query: 681 IRHRNIVKFYG-FCSHAQHSFLVYEFLERGSLAAILS 716
IV FYG F S + S + E ++ GSL +L
Sbjct: 61 CNSPYIVGFYGAFYSDGEIS-ICMEHMDGGSLDQVLK 96
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 622 ETNDFDAEYCIGNGGHGSVYR-AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
+ +DF+ +G G G V++ + PSG V+A K H I + A + + + E+Q L E
Sbjct: 4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHE 60
Query: 681 IRHRNIVKFYG-FCSHAQHSFLVYEFLERGSLAAILS 716
IV FYG F S + S + E ++ GSL +L
Sbjct: 61 CNSPYIVGFYGAFYSDGEIS-ICMEHMDGGSLDQVLK 96
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 622 ETNDFDAEYCIGNGGHGSVYR-AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
+ +DF+ +G G G V++ + PSG V+A K H I + A + + + E+Q L E
Sbjct: 4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHE 60
Query: 681 IRHRNIVKFYG-FCSHAQHSFLVYEFLERGSLAAILS 716
IV FYG F S + S + E ++ GSL +L
Sbjct: 61 CNSPYIVGFYGAFYSDGEIS-ICMEHMDGGSLDQVLK 96
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 104/254 (40%), Gaps = 41/254 (16%)
Query: 148 SSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF-L 206
+S + +FL+ N ++ + N+ L++++N+L+G L L +LDLS
Sbjct: 31 ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNA 90
Query: 207 PLSVGNLTNLKSLG------------------------------LMDNHLSGSIPPSFGN 236
L V + T + LG L DN+L +F +
Sbjct: 91 QLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRD 150
Query: 237 -SMLTWLTLSGNHFTGYLPHNICRG-GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNG 294
LT L L GN +P + RG L+ ++ +NH P + R+ L+ + L
Sbjct: 151 LGNLTHLFLHGNRIPS-VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFA 209
Query: 295 NNLTGNISEALGLYPNLTFIDLSRNNFYGEISSN--WGKCPKLGTLNVSMNNITGGIPRE 352
NNL+ +E L +L ++ L+ N + + + W L S + + +P+
Sbjct: 210 NNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWA---WLQKFRGSSSEVPCNLPQR 266
Query: 353 IG--NMSQLQALDL 364
+ ++ +L A DL
Sbjct: 267 LAGRDLKRLAASDL 280
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 71 SFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP----AEVGLLTHL 126
+F L L L G P L L Y+ L N L +P ++G LTHL
Sbjct: 99 TFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTHL 157
Query: 127 KVLSFQFNELDGSIPPEVCQ-LSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
F S+P + L S++ L L+ NH+ P +L ++ LY+ N+LS
Sbjct: 158 ----FLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Query: 186 ---GSILTNIGNLKFL 198
+L + +L++L
Sbjct: 214 MLPAEVLVPLRSLQYL 229
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G+VY+ + VAVK + + P Q + F EV L + RH NI+ F G
Sbjct: 36 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 91
Query: 692 FCSHAQHSFLVYEFLERGSL 711
+ + Q + +V ++ E SL
Sbjct: 92 YSTKPQLA-IVTQWCEGSSL 110
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G+VY+ + VAVK + + P Q + F EV L + RH NI+ F G
Sbjct: 20 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 75
Query: 692 FCSHAQHSFLVYEFLERGSL 711
+ + Q + +V ++ E SL
Sbjct: 76 YSTKPQLA-IVTQWCEGSSL 94
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G+VY+ + VAVK + + P Q + F EV L + RH NI+ F G
Sbjct: 16 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 71
Query: 692 FCSHAQHSFLVYEFLERGSL 711
+ + Q + +V ++ E SL
Sbjct: 72 YSTAPQLA-IVTQWCEGSSL 90
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFL-TEVQALTEIRHRNIVKF 689
IG G G V A + SG++VAVKK + ++E L EV + + +H N+V+
Sbjct: 28 IGEGSTGIVCIATVRSSGKLVAVKKMDL-----RKQQRRELLFNEVVIMRDYQHENVVEM 82
Query: 690 YGFCSHAQHSFLVYEFLERGSLAAILS 716
Y ++V EFLE G+L I++
Sbjct: 83 YNSYLVGDELWVVMEFLEGGALTDIVT 109
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 622 ETNDFDAEYCIGNGGHGSVYR-AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
+ +DF+ +G G G V++ + PSG V+A K H I + A + + + E+Q L E
Sbjct: 7 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHE 63
Query: 681 IRHRNIVKFYG-FCSHAQHSFLVYEFLERGSLAAILS 716
IV FYG F S + S + E ++ GSL +L
Sbjct: 64 CNSPYIVGFYGAFYSDGEIS-ICMEHMDGGSLDQVLK 99
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G+VY+ + VAVK + + P Q + F EV L + RH NI+ F G
Sbjct: 32 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 87
Query: 692 FCSHAQHSFLVYEFLERGSL 711
+ + Q + +V ++ E SL
Sbjct: 88 YSTKPQLA-IVTQWCEGSSL 106
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG G G V + G VAVK + A + FL E +T++RH N+V+ G
Sbjct: 14 IGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLG 66
Query: 692 FCSHAQHS-FLVYEFLERGSLAAIL 715
+ ++V E++ +GSL L
Sbjct: 67 VIVEEKGGLYIVTEYMAKGSLVDYL 91
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFL-TEVQALTEIRHRNIVKF 689
IG G G V A + SG++VAVKK + ++E L EV + + +H N+V+
Sbjct: 32 IGEGSTGIVCIATVRSSGKLVAVKKMDL-----RKQQRRELLFNEVVIMRDYQHENVVEM 86
Query: 690 YGFCSHAQHSFLVYEFLERGSLAAILS 716
Y ++V EFLE G+L I++
Sbjct: 87 YNSYLVGDELWVVMEFLEGGALTDIVT 113
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFL-TEVQALTEIRHRNIVKF 689
IG G G V A + SG++VAVKK + ++E L EV + + +H N+V+
Sbjct: 39 IGEGSTGIVCIATVRSSGKLVAVKKMDL-----RKQQRRELLFNEVVIMRDYQHENVVEM 93
Query: 690 YGFCSHAQHSFLVYEFLERGSLAAILS 716
Y ++V EFLE G+L I++
Sbjct: 94 YNSYLVGDELWVVMEFLEGGALTDIVT 120
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 622 ETNDFDAEYCIGNGGHGSVYR-AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
+ +DF+ +G G G V++ + PSG V+A K H I + A + + + E+Q L E
Sbjct: 23 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHE 79
Query: 681 IRHRNIVKFYG-FCSHAQHSFLVYEFLERGSLAAILS 716
IV FYG F S + S + E ++ GSL +L
Sbjct: 80 CNSPYIVGFYGAFYSDGEIS-ICMEHMDGGSLDQVLK 115
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG G G V + G VAVK + A + FL E +T++RH N+V+ G
Sbjct: 29 IGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLG 81
Query: 692 FCSHAQHS-FLVYEFLERGSLAAIL 715
+ ++V E++ +GSL L
Sbjct: 82 VIVEEKGGLYIVTEYMAKGSLVDYL 106
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 629 EYCIGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
+ +G G G V R +LPS + VA+K Q +++FL E + + H
Sbjct: 50 DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHP 106
Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
NI++ G + ++ +V E +E GSL + L
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEXMENGSLDSFL 137
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFL-TEVQALTEIRHRNIVKF 689
IG G G V A + SG++VAVKK + ++E L EV + + +H N+V+
Sbjct: 37 IGEGSTGIVCIATVRSSGKLVAVKKMDL-----RKQQRRELLFNEVVIMRDYQHENVVEM 91
Query: 690 YGFCSHAQHSFLVYEFLERGSLAAILS 716
Y ++V EFLE G+L I++
Sbjct: 92 YNSYLVGDELWVVMEFLEGGALTDIVT 118
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 622 ETNDFDAEYCIGNGGHGSVYR-AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
+ +DF+ +G G G V++ + PSG V+A K H I + A + + + E+Q L E
Sbjct: 31 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHE 87
Query: 681 IRHRNIVKFYG-FCSHAQHSFLVYEFLERGSLAAILS 716
IV FYG F S + S + E ++ GSL +L
Sbjct: 88 CNSPYIVGFYGAFYSDGEIS-ICMEHMDGGSLDQVLK 123
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 622 ETNDFDAEYCIGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQA 677
+ + + +G G G V R +LPS + VA+K Q +++FL E
Sbjct: 14 DATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASI 70
Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ + H NI++ G + ++ +V E +E GSL + L
Sbjct: 71 MGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFL 108
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 632 IGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+G+G G VY ++ PS VAVK + +Q D+ +FL E +++ H+N
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTL-PEVYSEQ--DELDFLMEALIISKFNHQN 109
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
IV+ G + F++ E + G L + L
Sbjct: 110 IVRCIGVSLQSLPRFILLELMAGGDLKSFL 139
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFL-TEVQALTEIRHRNIVKF 689
IG G G V A + SG++VAVKK + ++E L EV + + +H N+V+
Sbjct: 82 IGEGSTGIVCIATVRSSGKLVAVKKMDL-----RKQQRRELLFNEVVIMRDYQHENVVEM 136
Query: 690 YGFCSHAQHSFLVYEFLERGSLAAILS 716
Y ++V EFLE G+L I++
Sbjct: 137 YNSYLVGDELWVVMEFLEGGALTDIVT 163
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI 681
++ + + +G G G V + +G+ AVK S Q D++ L EVQ L ++
Sbjct: 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVI-SKRQVKQKTDKESLLREVQLLKQL 83
Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
H NI K Y F + +LV E G L
Sbjct: 84 DHPNIXKLYEFFEDKGYFYLVGEVYTGGEL 113
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 632 IGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G G G V R +LPS + VA+K Q +++FL E + + H NI+
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 109
Query: 688 KFYGFCSHAQHSFLVYEFLERGSLAAIL 715
+ G + ++ +V E +E GSL + L
Sbjct: 110 RLEGVVTKSKPVMIVTEXMENGSLDSFL 137
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFL--TEVQALTEIRHRNIVK 688
IG G G V A + SG++VAVKK D Q+ L EV + + +H N+V+
Sbjct: 159 IGEGSTGIVCIATVRSSGKLVAVKKM------DLRKQQRRELLFNEVVIMRDYQHENVVE 212
Query: 689 FYGFCSHAQHSFLVYEFLERGSLAAILS 716
Y ++V EFLE G+L I++
Sbjct: 213 MYNSYLVGDELWVVMEFLEGGALTDIVT 240
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG G G V + G VAVK + A + FL E +T++RH N+V+ G
Sbjct: 201 IGKGEFGDVMLGDY-RGNKVAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLG 253
Query: 692 FCSHAQHS-FLVYEFLERGSLAAIL 715
+ ++V E++ +GSL L
Sbjct: 254 VIVEEKGGLYIVTEYMAKGSLVDYL 278
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G+VY+ + VAVK + + P Q + F EV L + RH NI+ F G
Sbjct: 32 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGVLRKTRHVNILLFMG 87
Query: 692 FCSHAQHSFLVYEFLERGSL 711
+ + Q + +V ++ E SL
Sbjct: 88 YSTAPQLA-IVTQWCEGSSL 106
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 12/75 (16%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFL-TEVQALTEIRHRNIVKF 689
IGNG G VY+A+L SGE+VA+KK + K F E+Q + ++ H NIV+
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKK---------VLQGKAFKNRELQIMRKLDHCNIVRL 78
Query: 690 -YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 79 RYFFYSSGEKKDEVY 93
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 12/75 (16%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFL-TEVQALTEIRHRNIVKF 689
IGNG G VY+A+L SGE+VA+KK + K F E+Q + ++ H NIV+
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKK---------VLQGKAFKNRELQIMRKLDHCNIVRL 78
Query: 690 -YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 79 RYFFYSSGEKKDEVY 93
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 12/75 (16%)
Query: 632 IGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFL-TEVQALTEIRHRNIVKF 689
IGNG G VY+A+L SGE+VA+KK + K F E+Q + ++ H NIV+
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKK---------VLQGKAFKNRELQIMRKLDHCNIVRL 78
Query: 690 -YGFCSHAQHSFLVY 703
Y F S + VY
Sbjct: 79 RYFFYSSGEKKDEVY 93
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 311 LTFIDLSRNNFYGEISSNWGKCPK------LGTLNVSMNNITGGIPREIGN-MSQLQALD 363
L+F L+ N+ Y +S +WGKC L L+VS N T I N +S+ QA
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235
Query: 364 LSL-NHIVG 371
L L +HI+G
Sbjct: 236 LILAHHIMG 244
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 121/315 (38%), Gaps = 34/315 (10%)
Query: 247 NHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALG 306
N F G ++ L F+ S N + E+L++ L L N + EA
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLN---SRVFETLKDLKVL---NLAYNKINKIADEAFY 311
Query: 307 LYPNLTFIDLSRNNFYGEI-SSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLS 365
NL ++LS N GE+ SSN+ PK+ +++ N+I + + +LQ LDL
Sbjct: 312 GLDNLQVLNLSY-NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370
Query: 366 LN-----HIVGEIPKEL---GKLNSLTKLILRGNQL---TGRLPT-EIGSLI----ELEY 409
N H + IP KL +L K+ L N + RL +I + L+
Sbjct: 371 DNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQI 430
Query: 410 LDFSANKFNNSVPEXXXXXXXXXXXXXX---XXQFXXXXXXXXXXXXXXSELDA---SHN 463
L + N+F++ + Q S L +HN
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
Query: 464 LFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAF 523
P L +L L+L+ N L+ L N L I+DIS NQL P P+ F
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPD--VF 546
Query: 524 RNAPVEALEGNKELC 538
+ V + NK +C
Sbjct: 547 VSLSVLDITHNKFIC 561
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 629 EYCIGNGGHGSVY--RAELPSGEV--VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
E IG G G V R +LP VA+K Q +++FL E + + H
Sbjct: 27 ERVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHP 83
Query: 685 NIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
NI+ G + ++ +V E++E GSL L
Sbjct: 84 NIIHLEGVVTKSKPVMIVTEYMENGSLDTFLK 115
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
+G G G V + VA+K + EF+ E + + + H +V+ YG
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEGS-----MSEDEFIEEAKVMMNLSHEKLVQLYG 86
Query: 692 FCSHAQHSFLVYEFLERGSL 711
C+ + F++ E++ G L
Sbjct: 87 VCTKQRPIFIITEYMANGCL 106
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
+G G G V + VA+K + EF+ E + + + H +V+ YG
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEGS-----MSEDEFIEEAKVMMNLSHEKLVQLYG 86
Query: 692 FCSHAQHSFLVYEFLERGSL 711
C+ + F++ E++ G L
Sbjct: 87 VCTKQRPIFIITEYMANGCL 106
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 96/400 (24%), Positives = 154/400 (38%), Gaps = 61/400 (15%)
Query: 33 VSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLR--DFSFSSFPQLVHLDLSLNGFFG 90
VS +++ C+ ++ TNI++ N + R +F+ + QL LD+ N
Sbjct: 9 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 68
Query: 91 TIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSI 150
P +L K+P LKVL+ Q NEL +++
Sbjct: 69 LEP-----------------ELCQKLPM-------LKVLNLQHNELSQLSDKTFAFCTNL 104
Query: 151 EELFLYSNHLNG-SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS 209
EL L SN + PF+ N++ L +++N LS T +G + L
Sbjct: 105 TELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSS---TKLGT-------QVQLENLQ 153
Query: 210 VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVS 269
L+N K L L F NS L L LS N + P G L ++
Sbjct: 154 ELLLSNNKIQALKSEELD-----IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 208
Query: 270 ENHFQGTIPESLRNC-----TSLIRVRLNGNNL-TGNISEALGL-YPNLTFIDLSRNNFY 322
++ E L C TS+ + L+ + L T + + LGL + NLT +DLS NN
Sbjct: 209 NVQLGPSLTEKL--CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 266
Query: 323 GEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHI-----VGEIPK-- 375
+ ++ P+L + NNI + + ++ L+L + + +PK
Sbjct: 267 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 326
Query: 376 --ELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFS 413
L L L + N + G LI L+YL S
Sbjct: 327 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 366
>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
pdb|4EUU|B Chain B, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
Length = 319
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
+G G +V+R +G++ A+K F++ + Q + E + L ++ H+NIVK +
Sbjct: 17 LGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQ---MREFEVLKKLNHKNIVKLF 73
Query: 691 GFCSH--AQHSFLVYEFLERGSLAAILS 716
+H L+ EF GSL +L
Sbjct: 74 AIEEETTTRHKVLIMEFCPCGSLYTVLE 101
>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|B Chain B, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|C Chain C, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALO|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Ternary Complex With Amp-Pnp And P38 Peptide
pdb|3VUT|A Chain A, Crystal Structures Of Non-Phosphorylated Map2k4
pdb|3VUT|B Chain B, Crystal Structures Of Non-Phosphorylated Map2k4
Length = 327
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 9/64 (14%)
Query: 632 IGNGGHGSVYR-AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN---IV 687
IG G +GSV + PSG+++AVK+ S++ D+ +QK+ L ++ + +R + IV
Sbjct: 30 IGRGAYGSVNKMVHKPSGQIMAVKRIRSTV--DE-KEQKQLLMDLDVV--MRSSDCPYIV 84
Query: 688 KFYG 691
+FYG
Sbjct: 85 QFYG 88
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
+G G G V + VA+K + EF+ E + + + H +V+ YG
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIKEGS-----MSEDEFIEEAKVMMNLSHEKLVQLYG 71
Query: 692 FCSHAQHSFLVYEFLERGSL 711
C+ + F++ E++ G L
Sbjct: 72 VCTKQRPIFIITEYMANGCL 91
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
+G G G V + VA+K + EF+ E + + + H +V+ YG
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIKEGS-----MSEDEFIEEAKVMMNLSHEKLVQLYG 71
Query: 692 FCSHAQHSFLVYEFLERGSL 711
C+ + F++ E++ G L
Sbjct: 72 VCTKQRPIFIITEYMANGCL 91
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
+G G G V + VA+K + EF+ E + + + H +V+ YG
Sbjct: 23 LGTGQFGVVKYGKWRGQYDVAIKMIKEGS-----MSEDEFIEEAKVMMNLSHEKLVQLYG 77
Query: 692 FCSHAQHSFLVYEFLERGSL 711
C+ + F++ E++ G L
Sbjct: 78 VCTKQRPIFIITEYMANGCL 97
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 600 NPQGLFSILNFEGKLVYDEIVRETNDFDAEYC--IGNGGHGSVYRAELPSGEVVAVKKFH 657
+P + +L +GK + TN C IGNG G V++A+L + VA+KK
Sbjct: 20 DPNKVIKVLASDGKTGEQREIAYTN------CKVIGNGSFGVVFQAKLVESDEVAIKKV- 72
Query: 658 SSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGF 692
+ D++ E+Q + ++H N+V F
Sbjct: 73 -------LQDKRFKNRELQIMRIVKHPNVVDLKAF 100
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 476 LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN 511
LKSLE+LNLSHNNL L + F +H L + ++ N
Sbjct: 225 LKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 476 LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN 511
LKSLE+LNLSHNNL L + F +H L + ++ N
Sbjct: 225 LKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
+G G G + +GEV+ +K+ I D+ Q+ FL EV+ + + H N++KF
Sbjct: 18 LGKGCFGQAIKVTHRETGEVMVMKEL---IRFDE-ETQRTFLKEVKVMRCLEHPNVLKFI 73
Query: 691 GFCSHAQHSFLVYEFLERGSLAAILS 716
G + + E+++ G+L I+
Sbjct: 74 GVLYKDKRLNFITEYIKGGTLRGIIK 99
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 96/400 (24%), Positives = 154/400 (38%), Gaps = 61/400 (15%)
Query: 33 VSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLR--DFSFSSFPQLVHLDLSLNGFFG 90
VS +++ C+ ++ TNI++ N + R +F+ + QL LD+ N
Sbjct: 14 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 73
Query: 91 TIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSI 150
P +L K+P LKVL+ Q NEL +++
Sbjct: 74 LEP-----------------ELCQKLPM-------LKVLNLQHNELSQLSDKTFAFCTNL 109
Query: 151 EELFLYSNHLNG-SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS 209
EL L SN + PF+ N++ L +++N LS T +G + L
Sbjct: 110 TELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSS---TKLGT-------QVQLENLQ 158
Query: 210 VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVS 269
L+N K L L F NS L L LS N + P G L ++
Sbjct: 159 ELLLSNNKIQALKSEELD-----IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 213
Query: 270 ENHFQGTIPESLRNC-----TSLIRVRLNGNNL-TGNISEALGL-YPNLTFIDLSRNNFY 322
++ E L C TS+ + L+ + L T + + LGL + NLT +DLS NN
Sbjct: 214 NVQLGPSLTEKL--CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 271
Query: 323 GEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHI-----VGEIPK-- 375
+ ++ P+L + NNI + + ++ L+L + + +PK
Sbjct: 272 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 331
Query: 376 --ELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFS 413
L L L + N + G LI L+YL S
Sbjct: 332 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 371
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
+G G G V + VA+K + EF+ E + + + H +V+ YG
Sbjct: 12 LGTGQFGVVKYGKWRGQYDVAIKMIKEGS-----MSEDEFIEEAKVMMNLSHEKLVQLYG 66
Query: 692 FCSHAQHSFLVYEFLERGSL 711
C+ + F++ E++ G L
Sbjct: 67 VCTKQRPIFIITEYMANGCL 86
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
+G G G V + VA+K + EF+ E + + + H +V+ YG
Sbjct: 16 LGTGQFGVVKYGKWRGQYDVAIKMIKEGS-----MSEDEFIEEAKVMMNLSHEKLVQLYG 70
Query: 692 FCSHAQHSFLVYEFLERGSL 711
C+ + F++ E++ G L
Sbjct: 71 VCTKQRPIFIITEYMANGCL 90
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 96/400 (24%), Positives = 154/400 (38%), Gaps = 61/400 (15%)
Query: 33 VSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLR--DFSFSSFPQLVHLDLSLNGFFG 90
VS +++ C+ ++ TNI++ N + R +F+ + QL LD+ N
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 91 TIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSI 150
P +L K+P LKVL+ Q NEL +++
Sbjct: 64 LEP-----------------ELCQKLPM-------LKVLNLQHNELSQLSDKTFAFCTNL 99
Query: 151 EELFLYSNHLNG-SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLS 209
EL L SN + PF+ N++ L +++N LS T +G + L
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSS---TKLGT-------QVQLENLQ 148
Query: 210 VGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVS 269
L+N K L L F NS L L LS N + P G L ++
Sbjct: 149 ELLLSNNKIQALKSEELD-----IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203
Query: 270 ENHFQGTIPESLRNC-----TSLIRVRLNGNNL-TGNISEALGL-YPNLTFIDLSRNNFY 322
++ E L C TS+ + L+ + L T + + LGL + NLT +DLS NN
Sbjct: 204 NVQLGPSLTEKL--CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261
Query: 323 GEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHI-----VGEIPK-- 375
+ ++ P+L + NNI + + ++ L+L + + +PK
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321
Query: 376 --ELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFS 413
L L L + N + G LI L+YL S
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 625 DFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683
+F E IG G VYRA L G VA+KK D A + + + E+ L ++ H
Sbjct: 33 NFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKA-RADCIKEIDLLKQLNH 91
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
N++K+Y +V E + G L+ ++
Sbjct: 92 PNVIKYYASFIEDNELNIVLELADAGDLSRMIK 124
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 10/158 (6%)
Query: 213 LTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRG-GLLEAFIVSE 270
L L+ L L DN L +F + LT L L GN + +P RG L+ ++ +
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQ 186
Query: 271 NHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSN-- 328
N P + R+ L+ + L NNL+ +EAL L ++ L+ N + + +
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 246
Query: 329 WGKCPKLGTLNVSMNNITGGIPREIG--NMSQLQALDL 364
W L S + + +P+ + ++ +L A DL
Sbjct: 247 WA---WLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL 281
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 15/178 (8%)
Query: 31 TNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFG 90
+NV ++I A+ G++ + + L + ++ +F +L L L G
Sbjct: 65 SNVLARIDAAAFTGLAL-----LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119
Query: 91 TIPSQIGNLTKLSYISLDSNQLSGKIP----AEVGLLTHLKVLSFQFNELDGSIPPEVCQ 146
P L L Y+ L N L +P ++G LTHL F S+P +
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHL----FLHGNRISSVPERAFR 174
Query: 147 -LSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDL 203
L S++ L L+ N + P +L ++ LY+ N+LS + L+ L L L
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680
+ +DF+ +G G G V + + PSG ++A K H I + A + + + E+Q L E
Sbjct: 14 KDDDFERISELGAGNGGVVTKVQHRPSGLIMARKLIHLEI---KPAIRNQIIRELQVLHE 70
Query: 681 IRHRNIVKFYG-FCSHAQHSFLVYEFLERGSLAAILS 716
IV FYG F S + S + E ++ GSL +L
Sbjct: 71 CNSPYIVGFYGAFYSDGEIS-ICMEHMDGGSLDQVLK 106
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 10/158 (6%)
Query: 213 LTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRG-GLLEAFIVSE 270
L L+ L L DN L +F + LT L L GN + +P RG L+ ++ +
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQ 185
Query: 271 NHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSN-- 328
N P + R+ L+ + L NNL+ +EAL L ++ L+ N + + +
Sbjct: 186 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 245
Query: 329 WGKCPKLGTLNVSMNNITGGIPREIG--NMSQLQALDL 364
W L S + + +P+ + ++ +L A DL
Sbjct: 246 WA---WLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL 280
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 15/178 (8%)
Query: 31 TNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFG 90
+NV ++I A+ G++ + + L + ++ +F +L L L G
Sbjct: 64 SNVLARIDAAAFTGLAL-----LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 118
Query: 91 TIPSQIGNLTKLSYISLDSNQLSGKIP----AEVGLLTHLKVLSFQFNELDGSIPPEVCQ 146
P L L Y+ L N L +P ++G LTHL F S+P +
Sbjct: 119 LGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHL----FLHGNRISSVPERAFR 173
Query: 147 -LSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDL 203
L S++ L L+ N + P +L ++ LY+ N+LS + L+ L L L
Sbjct: 174 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 231
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G G+VY A ++ +G+ VA+++ + Q ++ + E+ + E ++ NIV +
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMN----LQQQPKKELIINEILVMRENKNPNIVNYL 83
Query: 691 GFCSHAQHSFLVYEFLERGSLAAILS 716
++V E+L GSL +++
Sbjct: 84 DSYLVGDELWVVMEYLAGGSLTDVVT 109
>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
pdb|4EUT|B Chain B, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
Length = 396
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
+G G +V+R +G++ A+K F++ + Q + E + L ++ H+NIVK +
Sbjct: 17 LGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQ---MREFEVLKKLNHKNIVKLF 73
Query: 691 GFCSH--AQHSFLVYEFLERGSLAAILS 716
+H L+ EF GSL +L
Sbjct: 74 AIEEETTTRHKVLIMEFCPCGSLYTVLE 101
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 632 IGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK 688
+GNG + +VY+ +G VA+K K S A + E+ + E++H NIV+
Sbjct: 13 LGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTA-----IREISLMKELKHENIVR 67
Query: 689 FYGFCSHAQHSFLVYEFLE 707
Y LV+EF++
Sbjct: 68 LYDVIHTENKLTLVFEFMD 86
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G G+VY A ++ +G+ VA+++ + Q ++ + E+ + E ++ NIV +
Sbjct: 29 IGQGASGTVYTAMDVATGQEVAIRQMN----LQQQPKKELIINEILVMRENKNPNIVNYL 84
Query: 691 GFCSHAQHSFLVYEFLERGSLAAILS 716
++V E+L GSL +++
Sbjct: 85 DSYLVGDELWVVMEYLAGGSLTDVVT 110
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
+G G G V+ + VAVK Q FL E + ++H +V+ Y
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQA-----FLEEANLMKTLQHDKLVRLYA 74
Query: 692 FCSHAQHSFLVYEFLERGSLAAILS 716
+ + +++ EF+ +GSL L
Sbjct: 75 VVTKEEPIYIITEFMAKGSLLDFLK 99
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G G+VY A ++ +G+ VA+++ + Q ++ + E+ + E ++ NIV +
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMN----LQQQPKKELIINEILVMRENKNPNIVNYL 83
Query: 691 GFCSHAQHSFLVYEFLERGSLAAILS 716
++V E+L GSL +++
Sbjct: 84 DSYLVGDELWVVMEYLAGGSLTDVVT 109
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G G+VY A ++ +G+ VA+++ + Q ++ + E+ + E ++ NIV +
Sbjct: 29 IGQGASGTVYTAMDVATGQEVAIRQMN----LQQQPKKELIINEILVMRENKNPNIVNYL 84
Query: 691 GFCSHAQHSFLVYEFLERGSLAAILS 716
++V E+L GSL +++
Sbjct: 85 DSYLVGDELWVVMEYLAGGSLTDVVT 110
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG G G VY GEV A++ I D K F EV A + RH N+V F G
Sbjct: 41 IGKGRFGQVYHGRW-HGEV-AIRLI--DIERDNEDQLKAFKREVMAYRQTRHENVVLFMG 96
Query: 692 FCSHAQHSFLVYEFLERGSLAAIL 715
C H ++ + +L +++
Sbjct: 97 ACMSPPHLAIITSLCKGRTLYSVV 120
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
IG G G+VY A ++ +G+ VA+++ + Q ++ + E+ + E ++ NIV +
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMN----LQQQPKKELIINEILVMRENKNPNIVNYL 83
Query: 691 GFCSHAQHSFLVYEFLERGSLAAILS 716
++V E+L GSL +++
Sbjct: 84 DSYLVGDELWVVMEYLAGGSLTDVVT 109
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 94 SQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNEL-DGSIPPEVCQLSSIEE 152
S + NL++L+++ + +NQ+S I A V LT LK L+ N++ D S+ + QL+S
Sbjct: 237 SPLANLSQLTWLEIGTNQIS-DINA-VKDLTKLKXLNVGSNQISDISVLNNLSQLNS--- 291
Query: 153 LFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
LFL +N L +G L+N+ L+++ N ++
Sbjct: 292 LFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHIT 324
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 112/265 (42%), Gaps = 38/265 (14%)
Query: 83 LSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPP 142
L+LNG T S + NL KL+ + + +N+++ + + LT+L+ L NE + S
Sbjct: 71 LNLNGNQITDISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLREL--YLNEDNISDIS 126
Query: 143 EVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELD 202
+ L+ L L +NH L P L N + + L + + + +T I NL L+ L
Sbjct: 127 PLANLTKXYSLNLGANHNLSDLSP-LSNXTGLNYLTVTESKVKD--VTPIANLTDLYSLS 183
Query: 203 LSF------LPLS--------------------VGNLTNLKSLGLMDNHLSGSIPPSFGN 236
L++ PL+ V N T L SL + +N ++ + P
Sbjct: 184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITD-LSPLANL 242
Query: 237 SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNN 296
S LTWL + N + + + L+ V N L N + L + LN N
Sbjct: 243 SQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQ 298
Query: 297 LTGNISEALGLYPNLTFIDLSRNNF 321
L E +G NLT + LS+N+
Sbjct: 299 LGNEDXEVIGGLTNLTTLFLSQNHI 323
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 26/137 (18%)
Query: 96 IGNLTKLSYISLDSNQLSGKIP-AEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELF 154
+ N T+L+ + + +N+++ P A + LT L++ + Q ++++ V L+ ++ L
Sbjct: 217 VANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA-----VKDLTKLKXLN 271
Query: 155 LYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLT 214
+ SN + S L NLS + L++NNN L GN +G LT
Sbjct: 272 VGSNQI--SDISVLNNLSQLNSLFLNNNQL--------GNEDXEV----------IGGLT 311
Query: 215 NLKSLGLMDNHLSGSIP 231
NL +L L NH++ P
Sbjct: 312 NLTTLFLSQNHITDIRP 328
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 389
G P LGTL++S N + +P + L LD+S N + L L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 390 GNQLTGRLPTEIGSLIELEYLDFSANKFN 418
GN+L P + +LE L + N+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 23/155 (14%)
Query: 97 GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFL 155
G L L + L NQL +P L L VL FN L S+P + L ++EL+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 156 YSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTN 215
N L P L + +L + NN L+ EL L L N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT--------------ELPAGLL----NGLEN 173
Query: 216 LKSLGLMDNHLSGSIPPS-FGNSMLTWLTLSGNHF 249
L +L L +N L +IP FG+ +L + L GN +
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 268 VSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS 327
+SEN +L T L ++ L+ LT + G P L +DLS N +
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTK--LQVDGTLPVLGTLDLSHNQLQS-LPL 94
Query: 328 NWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI 387
P L L+VS N +T + + +LQ L L N + P L L KL
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 388 LRGNQLTGRLPTEIGSLIELEYLD 411
L NQLT LP G L LE LD
Sbjct: 155 LANNQLT-ELPA--GLLNGLENLD 175
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 389
G P LGTL++S N + +P + L LD+S N + L L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 390 GNQLTGRLPTEIGSLIELEYLDFSANKFN 418
GN+L P + +LE L + N+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 23/155 (14%)
Query: 97 GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFL 155
G L L + L NQL +P L L VL FN L S+P + L ++EL+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 156 YSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTN 215
N L P L + +L + NN L+ EL L L N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT--------------ELPAGLL----NGLEN 173
Query: 216 LKSLGLMDNHLSGSIPPS-FGNSMLTWLTLSGNHF 249
L +L L +N L +IP FG+ +L + L GN +
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 268 VSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS 327
+SEN +L T L ++ L+ LT + G P L +DLS N +
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTK--LQVDGTLPVLGTLDLSHNQLQS-LPL 94
Query: 328 NWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI 387
P L L+VS N +T + + +LQ L L N + P L L KL
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 388 LRGNQLTGRLPTEIGSLIELEYLD 411
L NQLT LP G L LE LD
Sbjct: 155 LANNQLT-ELPA--GLLNGLENLD 175
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 389
G P LGTL++S N + +P + L LD+S N + L L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 390 GNQLTGRLPTEIGSLIELEYLDFSANKFN 418
GN+L P + +LE L + N+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 23/155 (14%)
Query: 97 GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFL 155
G L L + L NQL +P L L VL FN L S+P + L ++EL+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYL 131
Query: 156 YSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTN 215
N L P L + +L + NN L+ EL L L N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT--------------ELPAGLL----NGLEN 173
Query: 216 LKSLGLMDNHLSGSIPPS-FGNSMLTWLTLSGNHF 249
L +L L +N L +IP FG+ +L + L GN +
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 268 VSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS 327
+SEN +L T L ++ L+ LT + G P L +DLS N +
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTK--LQVDGTLPVLGTLDLSHNQLQS-LPL 94
Query: 328 NWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI 387
P L L+VS N +T + + +LQ L L N + P L L KL
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 388 LRGNQLTGRLPTEIGSLIELEYLD 411
L NQLT LP G L LE LD
Sbjct: 155 LANNQLT-ELPA--GLLNGLENLD 175
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 389
G P LGTL++S N + +P + L LD+S N + L L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 390 GNQLTGRLPTEIGSLIELEYLDFSANKF 417
GN+L P + +LE L + N+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 23/155 (14%)
Query: 97 GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFL 155
G L L + L NQL +P L L VL FN L S+P + L ++EL+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYL 131
Query: 156 YSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTN 215
N L P L + +L + NN L+ EL L L N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT--------------ELPAGLL----NGLEN 173
Query: 216 LKSLGLMDNHLSGSIPPS-FGNSMLTWLTLSGNHF 249
L +L L +N L +IP FG+ +L + L GN +
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 268 VSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS 327
+SEN +L T L ++ L+ LT + G P L +DLS N +
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTK--LQVDGTLPVLGTLDLSHNQLQS-LPL 94
Query: 328 NWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI 387
P L L+VS N +T + + +LQ L L N + P L L KL
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 388 LRGNQLTGRLPTEIGSLIELEYLD 411
L NQLT LP G L LE LD
Sbjct: 155 LANNQLT-ELPA--GLLNGLENLD 175
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 285 TSLIRVRLNGNNLTGN-ISEALGLYPNLTFIDLSRNNFYGEISSNWG---KCPKLGTLNV 340
TSL +++ GN+ N +S NLTF+DLS+ +IS WG +L LN+
Sbjct: 443 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL-EQIS--WGVFDTLHRLQLLNM 499
Query: 341 SMNNITGGIPREIGNMSQLQALDLSLNH------IVGEIPKELGKLN 381
S NN+ + L LD S N I+ PK L N
Sbjct: 500 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 546
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 57 SLRNTGLS----GTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL 112
S +N LS L+ +SFS+F +L LDLS L LS + L N +
Sbjct: 28 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 87
Query: 113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNG-SLPPFLGNL 171
P LT L+ L +L + QL ++++L + N ++ LP + NL
Sbjct: 88 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 147
Query: 172 SNIVRLYINNNSLSGSILTNIGNLKFLFE-------LDLSFLPL 208
+N+V + ++ N + + +L+FL E LD+S P+
Sbjct: 148 TNLVHVDLSYNYIQT---ITVNDLQFLRENPQVNLSLDMSLNPI 188
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 475 SLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP------VPNSTAFRN 525
+L L+ LN+SHNNL L + + ++ LS +D S N+++ P S AF N
Sbjct: 490 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 546
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 471 FQICSLKSLEKLNLSHNNL-SGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAF-RNAP 527
F I L +L+KLN++HN + S +P F + L +D+S N +Q N F R P
Sbjct: 117 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 175
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 285 TSLIRVRLNGNNLTGN-ISEALGLYPNLTFIDLSRNNFYGEISSNWG---KCPKLGTLNV 340
TSL +++ GN+ N +S NLTF+DLS+ +IS WG +L LN+
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL-EQIS--WGVFDTLHRLQLLNM 504
Query: 341 SMNNITGGIPREIGNMSQLQALDLSLNH------IVGEIPKELGKLN 381
S NN+ + L LD S N I+ PK L N
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 57 SLRNTGLS----GTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL 112
S +N LS L+ +SFS+F +L LDLS L LS + L N +
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92
Query: 113 SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNG-SLPPFLGNL 171
P LT L+ L +L + QL ++++L + N ++ LP + NL
Sbjct: 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152
Query: 172 SNIVRLYINNNSLSGSILTNIGNLKFLFE-------LDLSFLPL 208
+N+V + ++ N + + +L+FL E LD+S P+
Sbjct: 153 TNLVHVDLSYNYIQT---ITVNDLQFLRENPQVNLSLDMSLNPI 193
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 475 SLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP------VPNSTAFRN 525
+L L+ LN+SHNNL L + + ++ LS +D S N+++ P S AF N
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 299 GNISEALGLYPNLTF--IDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNM 356
G+++ + + PN+T+ +D + +I S+ +++S N + N
Sbjct: 2 GSLNPCIEVVPNITYQCMDQKLSKVPDDIPSS------TKNIDLSFNPLKILKSYSFSNF 55
Query: 357 SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYL 410
S+LQ LDLS I K L+ L+ LIL GN + P L LE L
Sbjct: 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 471 FQICSLKSLEKLNLSHNNL-SGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAF-RNAP 527
F I L +L+KLN++HN + S +P F + L +D+S N +Q N F R P
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 9/167 (5%)
Query: 254 PHNICRGGLLEAF--IVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEA-LGLYPN 310
PH IC + + + + +P L T+++ + NL S A L Y
Sbjct: 1 PHPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHL---SENLLYTFSLATLMPYTR 57
Query: 311 LTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIV 370
LT ++L R ++ + G P LGTL++S N + +P + L LD+S N +
Sbjct: 58 LTQLNLDRCEL-TKLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 114
Query: 371 GEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKF 417
L L L +L L+GN+L P + +LE L + N
Sbjct: 115 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 97 GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFL 155
G L L + L NQL +P L L VL FN L S+P + L ++EL+L
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYL 132
Query: 156 YSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTN 215
N L P L + +L + NN+L+ EL L L N
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLT--------------ELPAGLL----NGLEN 174
Query: 216 LKSLGLMDNHLSGSIPPS-FGNSMLTWLTLSGNHF 249
L +L L +N L +IP FG+ +L + L GN +
Sbjct: 175 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 208
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 619 IVRETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA 677
I + DF +G G VYRAE + +G VA+K Q+ EV+
Sbjct: 6 IGEKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQR-VQNEVKI 64
Query: 678 LTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
+++H +I++ Y + + + +LV E G + L
Sbjct: 65 HCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLK 103
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 93 PSQIGNLTKLSYISLDSNQLSGKIPAEV-GLLTHLKVLSFQFNELDGSIPPEVC-QLSSI 150
P +L L + L SNQL G +P V LT L VL N+L +P V +L +
Sbjct: 57 PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHL 114
Query: 151 EELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSL 184
+ELF+ N L LP + L+++ L ++ N L
Sbjct: 115 KELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 72 FSSFPQLVHLDLSLNGFFGTIPSQI-GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130
F S L L L N G +P + +LT+L+ + L +NQL+ A L HLK L
Sbjct: 60 FDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118
Query: 131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNN 182
N+L +P + +L+ + L L N L LS++ Y+ N
Sbjct: 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 389
G P LGTL++S N + +P + L LD+S N + L L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 390 GNQLTGRLPTEIGSLIELEYLDFSANKF 417
GN+L P + +LE L + N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDL 160
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 67/156 (42%), Gaps = 25/156 (16%)
Query: 97 GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFL 155
G L L + L NQL +P L L VL FN L S+P + L ++EL+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYL 131
Query: 156 YSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGN-LT 214
N L P L + +L + NN DL+ LP + N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN-------------------DLTELPAGLLNGLE 172
Query: 215 NLKSLGLMDNHLSGSIPPS-FGNSMLTWLTLSGNHF 249
NL +L L +N L +IP FG+ +L + L GN +
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 389
G P LGTL++S N + +P + L LD+S N + L L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 390 GNQLTGRLPTEIGSLIELEYLDFSANKF 417
GN+L P + +LE L + N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 97 GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFL 155
G L L + L NQL +P L L VL FN L S+P + L ++EL+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYL 131
Query: 156 YSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTN 215
N L P L + +L + NN+L+ EL L L N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT--------------ELPAGLL----NGLEN 173
Query: 216 LKSLGLMDNHLSGSIPPS-FGNSMLTWLTLSGNHF 249
L +L L +N L +IP FG+ +L + L GN +
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 8/153 (5%)
Query: 67 LRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHL 126
LR+ S + P+L L L + Q L L + L+ + +PA + L +L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQ--GLVNLQSLRLEWTGIRS-LPASIANLQNL 208
Query: 127 KVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG 186
K L + + L ++ P + L +EEL L + PP G + + RL + + S
Sbjct: 209 KSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
Query: 187 SILTNIGNLKFLFELDLSFLPLSVGNLTNLKSL 219
++ +I L L +LDL NL+ L SL
Sbjct: 268 TLPLDIHRLTQLEKLDLR----GCVNLSRLPSL 296
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 389
G P LGTL++S N + +P + L LD+S N + L L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 390 GNQLTGRLPTEIGSLIELEYLDFSAN 415
GN+L P + +LE L + N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 97 GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFL 155
G L L + L NQL +P L L VL FN L S+P + L ++EL+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYL 131
Query: 156 YSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTN 215
N L P L + +L + NN+L+ EL L L N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT--------------ELPAGLL----NGLEN 173
Query: 216 LKSLGLMDNHLSGSIPPS-FGNSMLTWLTLSGNHF 249
L +L L +N L +IP FG+ +L + L GN +
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 389
G P LGTL++S N + +P + L LD+S N + L L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 390 GNQLTGRLPTEIGSLIELEYLDFSANKF 417
GN+L P + +LE L + N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 97 GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFL 155
G L L + L NQL +P L L VL FN L S+P + L ++EL+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYL 131
Query: 156 YSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTN 215
N L P L + +L + NN+L+ EL L L N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT--------------ELPAGLL----NGLEN 173
Query: 216 LKSLGLMDNHLSGSIPPS-FGNSMLTWLTLSGNHF 249
L +L L +N L +IP FG+ +L + L GN +
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
+G G G V+ + VAVK Q FL E + ++H +V+ Y
Sbjct: 21 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQA-----FLEEANLMKTLQHDKLVRLYA 75
Query: 692 FCSHAQHSFLVYEFLERGSLAAILS 716
+ + +++ E++ +GSL L
Sbjct: 76 VVTREEPIYIITEYMAKGSLLDFLK 100
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 99 LTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLSSIEELFLYS 157
LT L+Y++L NQL LT+L L +N+L S+P V +L+ +++L LY
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQ 190
Query: 158 NHLNGSLPPFLGNLSNIVRLYINNN 182
N L L+++ +++++N
Sbjct: 191 NQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 94 SQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLSSIEE 152
S + LT L+Y+ L NQL LT+LK L N+L S+P V +L+++
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTY 137
Query: 153 LFLYSNHLNGSLPP-FLGNLSNIVRLYINNNSLSG------SILTNIGNLKFLFELDLSF 205
L L N L SLP L+N+ L ++ N L LT + +L+ L++ L
Sbjct: 138 LNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR-LYQNQLKS 195
Query: 206 LPLSV-GNLTNLKSLGLMDNHLSGSIP 231
+P V LT+L+ + L DN + P
Sbjct: 196 VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 476 LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514
L +L LNL+HN L L F+ + L+ +D+S NQLQ
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 66 TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
+L D F L +L+L+ N LT L+ + L NQL LT
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 126 LKVLSFQFNELDGSIPPEVC-QLSSIEELFLYSNHLNGSLP 165
LK L N+L S+P V +L+S++ ++L+ N + + P
Sbjct: 183 LKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 2/144 (1%)
Query: 280 SLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLN 339
+L+ T+L + L GN L + NL + L N + K L LN
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 340 VSMNNITGGIPREI-GNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP 398
++ N + +P+ + ++ L LDLS N + KL L L L NQL
Sbjct: 140 LAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 399 TEIGSLIELEYLDFSANKFNNSVP 422
L L+Y+ N ++ + P
Sbjct: 199 GVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 330 GKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 389
G P LGTL++S N + +P + L LD+S N + L L L +L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 390 GNQLTGRLPTEIGSLIELEYLDFSANKF 417
GN+L P + +LE L + N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 97 GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFL 155
G L L + L NQL +P L L VL FN L S+P + L ++EL+L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYL 131
Query: 156 YSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTN 215
N L P L + +L + NN+L+ EL L L N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT--------------ELPAGLL----NGLEN 173
Query: 216 LKSLGLMDNHLSGSIPPS-FGNSMLTWLTLSGNHF 249
L +L L +N L +IP FG+ +L + L GN +
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 632 IGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFL--TEVQALTEIRHRNIVK 688
IG G G V A E +G+ VAVKK D Q+ L EV + + H N+V
Sbjct: 53 IGEGSTGIVCIATEKHTGKQVAVKKM------DLRKQQRRELLFNEVVIMRDYHHDNVVD 106
Query: 689 FYGFCSHAQHSFLVYEFLERGSLAAILS 716
Y ++V EFLE G+L I++
Sbjct: 107 MYSSYLVGDELWVVMEFLEGGALTDIVT 134
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 8/196 (4%)
Query: 229 SIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLI 288
SIP ++ + L LS N T ++ R L+A +++ N +S + SL
Sbjct: 45 SIPSGLTEAVKS-LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 289 RVRLNGNNLTGNISEALGLYPNLTFIDLSRNNF--YGEISSNWGKCPKLGTLNV-SMNNI 345
+ L+ N L+ S +LTF++L N + GE +S + KL L V +M+
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTF 162
Query: 346 TGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ--LTGRLPTEIGS 403
T ++ ++ L+ L++ + + PK L + +++ LIL Q L + ++ S
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222
Query: 404 LIE-LEYLDFSANKFN 418
+E LE D + F+
Sbjct: 223 SVECLELRDTDLDTFH 238
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 10/143 (6%)
Query: 45 ISCNDAGRVTNIS---LRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTK 101
IS +D R N+ L + G+ T+ + SFSS L HLDLS N S L+
Sbjct: 67 ISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125
Query: 102 LSYISLDSNQLSGKIPAEVGLLTHL-KVLSFQFNELDGSIP---PEVCQLSSIEELFLYS 157
L++++L N K E L +HL K+ + +D + L+ +EEL + +
Sbjct: 126 LTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183
Query: 158 NHLNGSLPPFLGNLSNIVRLYIN 180
+ L P L ++ N+ L ++
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILH 206
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 341 SMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTE 400
S+N+I G+ + ++LDLS N I +L + +L L+L N +
Sbjct: 42 SLNSIPSGLTEAV------KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95
Query: 401 IGSLIELEYLDFSANKFNN 419
SL LE+LD S N +N
Sbjct: 96 FSSLGSLEHLDLSYNYLSN 114
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 632 IGNGGHGSVYRAEL-------PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-R 682
+G G G V AE P V VAVK + ++D ++E++ + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEEDLSD---LVSEMEMMKMIGK 99
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
H+NI+ G C+ +++ E+ +G+L L
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYL 132
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +G +VAVK+ S P DQ Q++F E+Q L + I
Sbjct: 19 LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGP-DQ---QRDFQREIQILKALHSDFI 74
Query: 687 VKFYG--FCSHAQHSFLVYEFLERGSLAAIL 715
VK+ G + Q LV E+L G L L
Sbjct: 75 VKYRGVSYGPGRQSLRLVMEYLPSGCLRDFL 105
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 632 IGNGGHGSVYRAEL-------PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-R 682
+G G G V AE P V VAVK ++D ++E++ + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 99
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
H+NI+ G C+ +++ E+ +G+L L
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYL 132
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +G +VAVK+ S P DQ Q++F E+Q L + I
Sbjct: 31 LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGP-DQ---QRDFQREIQILKALHSDFI 86
Query: 687 VKFYG--FCSHAQHSFLVYEFLERGSLAAIL 715
VK+ G + Q LV E+L G L L
Sbjct: 87 VKYRGVSYGPGRQSLRLVMEYLPSGCLRDFL 117
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 263 LEAFIVSENHFQGTIPESL-RNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNF 321
L+ + N +P+ + R+ T L L+GN T + + L Y +LT IDLS N
Sbjct: 11 LDTVVRCSNKGLKVLPKGIPRDVTELY---LDGNQFTL-VPKELSNYKHLTLIDLSNNRI 66
Query: 322 YGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLN 381
+ ++ +L TL +S N + PR + L+ L L N I L+
Sbjct: 67 STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126
Query: 382 SLTKLILRGNQL 393
+L+ L + N L
Sbjct: 127 ALSHLAIGANPL 138
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 349 IPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELE 408
+P+E+ N L +DLS N I + + L LIL N+L P L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 409 YLDFSANKFNNSVPE 423
L N + VPE
Sbjct: 106 LLSLHGNDI-SVVPE 119
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 303 EALGLYPNLTFIDLSRNNFYGEISSNWGKCP-KLGTL------NVSMNNITGGIPREIGN 355
E + ++P L+ +DLS N GE CP K TL N M +G
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226
Query: 356 MSQLQALDLSLNHIVG-------EIPKELGKLN-SLTKLILRGNQLTGRLPTEIGSLIEL 407
QLQ LDLS N + + P +L LN S T L Q+ LP ++ S+++L
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL----KQVPKGLPAKL-SVLDL 281
Query: 408 EYLDFSANKFNNSVPE 423
Y N + +P+
Sbjct: 282 SYNRLDRNPSPDELPQ 297
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +G +VAVK+ S P DQ Q++F E+Q L + I
Sbjct: 18 LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGP-DQ---QRDFQREIQILKALHSDFI 73
Query: 687 VKFYG--FCSHAQHSFLVYEFLERGSLAAIL 715
VK+ G + Q LV E+L G L L
Sbjct: 74 VKYRGVSYGPGRQSLRLVMEYLPSGCLRDFL 104
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 632 IGNGGHGSVYRAEL-------PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-R 682
+G G G V AE P V VAVK ++D ++E++ + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 99
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
H+NI+ G C+ +++ E+ +G+L L
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYL 132
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEIXINK 60
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEIXINK 59
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLT-EVQALTEI-RHRNIVK 688
+GNG +G VY+ + +G++ A+K D D++E + E+ L + HRNI
Sbjct: 32 VGNGTYGQVYKGRHVKTGQLAAIKVM------DVTGDEEEEIKQEINMLKKYSHHRNIAT 85
Query: 689 FYG-FCSH-----AQHSFLVYEFLERGSLAAILS 716
+YG F +LV EF GS+ ++
Sbjct: 86 YYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIK 119
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 61 TGLSGTLRDFSFSSFP-------QLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLS 113
+G + ++ S +S P Q++HL +N P +LT+L+Y++L NQL+
Sbjct: 20 SGTTVNCQERSLASVPAGIPTTTQVLHL--YINQITKLEPGVFDSLTQLTYLNLAVNQLT 77
Query: 114 GKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ-LSSIEELFLYSNHLNGSLPPFLGNLS 172
LT L L+ N+L SIP V L S+ ++L++N P+ S
Sbjct: 78 ALPVGVFDKLTKLTHLALHINQLK-SIPMGVFDNLKSLTHIYLFNN-------PWDCECS 129
Query: 173 NIVRLYINNNSLS-GSILTNIGN 194
+I LY+ N + SI+ +GN
Sbjct: 130 DI--LYLKNWIVQHASIVNPLGN 150
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 8/196 (4%)
Query: 229 SIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLI 288
SIP ++ + L LS N T ++ R L+A +++ N +S + SL
Sbjct: 19 SIPSGLTEAVKS-LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 289 RVRLNGNNLTGNISEALGLYPNLTFIDLSRNNF--YGEISSNWGKCPKLGTLNV-SMNNI 345
+ L+ N L+ S +LTF++L N + GE +S + KL L V +M+
Sbjct: 78 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTF 136
Query: 346 TGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ--LTGRLPTEIGS 403
T ++ ++ L+ L++ + + PK L + +++ LIL Q L + ++ S
Sbjct: 137 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 196
Query: 404 LIE-LEYLDFSANKFN 418
+E LE D + F+
Sbjct: 197 SVECLELRDTDLDTFH 212
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
Query: 45 ISCNDAGRVTNIS---LRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTK 101
IS +D R N+ L + G+ T+ + SFSS L HLDLS N S L+
Sbjct: 41 ISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 99
Query: 102 LSYISLDSNQLSGKIPAEVGLLTHLKVLSF----QFNELDGSIPPEVCQLSSIEELFLYS 157
L++++L N K E L +HL L + + L+ +EEL + +
Sbjct: 100 LTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 157
Query: 158 NHLNGSLPPFLGNLSNIVRLYIN 180
+ L P L ++ N+ L ++
Sbjct: 158 SDLQSYEPKSLKSIQNVSHLILH 180
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEIXINK 59
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 632 IGNGGHGSVYRAEL-------PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-R 682
+G G G V AE P V VAVK ++D ++E++ + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 99
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
H+NI+ G C+ +++ E+ +G+L L
Sbjct: 100 HKNIITLLGACTQDGPLYVIVEYASKGNLREYL 132
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 632 IGNGGHGSVYRAEL-------PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-R 682
+G G G V AE P V VAVK ++D ++E++ + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 99
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
H+NI+ G C+ +++ E+ +G+L L
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYL 132
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 56 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 112
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 113 SLLGICLRSEGSPLVVLPYMKHGDL 137
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 632 IGNGGHGSVYRAEL-------PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-R 682
+G G G V AE P V VAVK ++D ++E++ + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 99
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
H+NI+ G C+ +++ E+ +G+L L
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYL 132
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 633 GNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGF 692
G G V++A+L + E VAVK F D+ + Q E+ EV +L ++H NI++F G
Sbjct: 33 ARGRFGCVWKAQLLN-EYVAVKIFPIQ---DKQSWQNEY--EVYSLPGMKHENILQFIGA 86
Query: 693 CSHAQHS----FLVYEFLERGSLAAILS 716
+L+ F E+GSL+ L
Sbjct: 87 EKRGTSVDVDLWLITAFHEKGSLSDFLK 114
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 97 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 153
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 154 SLLGICLRSEGSPLVVLPYMKHGDL 178
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 632 IGNGGHGSVYRAEL-------PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-R 682
+G G G V AE P V VAVK ++D ++E++ + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 99
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
H+NI+ G C+ +++ E+ +G+L L
Sbjct: 100 HKNIIHLLGACTQDGPLYVIVEYASKGNLREYL 132
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 107 LDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLSSIEELFLYSNHLNGSLP 165
L++NQ++ P L +L+ L F N+L +IP V +L+ + +L L NHL
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKSIPR 98
Query: 166 PFLGNLSNIVRLYINNN 182
NL ++ +Y+ NN
Sbjct: 99 GAFDNLKSLTHIYLYNN 115
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 151 EELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLS---FLP 207
+ L+L +N + P +L N+ +LY N+N L+ L L +LDL+
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 208 LSVGNLTNLKSL 219
+ G NLKSL
Sbjct: 96 IPRGAFDNLKSL 107
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 57 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 113
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 114 SLLGICLRSEGSPLVVLPYMKHGDL 138
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 39 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 95
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 96 SLLGICLRSEGSPLVVLPYMKHGDL 120
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 101/259 (38%), Gaps = 31/259 (11%)
Query: 91 TIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSI 150
+P +I T L + L +N +S + L HL L N++ L +
Sbjct: 47 AVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104
Query: 151 EELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSV 210
++L++ NHL +PP L S++V L I++N + +P V
Sbjct: 105 QKLYISKNHL-VEIPPNLP--SSLVELRIHDNRIRK-------------------VPKGV 142
Query: 211 -GNLTNLKSLGLMDNHL--SGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFI 267
L N+ + + N L SG P +F L +L +S TG +P ++ L
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPET--LNELH 199
Query: 268 VSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS 327
+ N Q E L + L R+ L N + + +L P L + L NN + +
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD-NNKLSRVPA 258
Query: 328 NWGKCPKLGTLNVSMNNIT 346
L + + NNIT
Sbjct: 259 GLPDLKLLQVVYLHTNNIT 277
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 626 FDAEYCIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCDQIADQKEFL-TEVQALTEIRH 683
D+ IG G G V A E SG VAVK + ++E L EV + + +H
Sbjct: 47 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDL-----RKQQRRELLFNEVVIMRDYQH 101
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
N+V+ Y + +++ EFL+ G+L I+S
Sbjct: 102 FNVVEMYKSYLVGEELWVLMEFLQGGALTDIVS 134
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 37 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 93
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 94 SLLGICLRSEGSPLVVLPYMKHGDL 118
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFH----SSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G + +VY+ + + +VA+K+ PC I EV L +++H NI
Sbjct: 10 LGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIR-------EVSLLKDLKHANI 62
Query: 687 VKFYGFCSHAQHSFLVYEFLER 708
V + + LV+E+L++
Sbjct: 63 VTLHDIIHTEKSLTLVFEYLDK 84
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 32/161 (19%)
Query: 582 FILRKQKSDSGDR------QSSNQNPQGLFS-ILNFEGKLVYDEIVRE--------TNDF 626
FI+R QK G+R + +N QG+ S ++ Y EI+ E T D+
Sbjct: 328 FIIRPQKE--GERALPSIPKLANNEKQGVRSHTVSVSETDDYAEIIDEEDTYTMPSTRDY 385
Query: 627 DAEY-------CIGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLTEV 675
+ + CIG G G V++ S E VA+K + C + +++FL E
Sbjct: 386 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKN---CTSDSVREKFLQEA 442
Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
+ + H +IVK G + +++ E G L + L
Sbjct: 443 LTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFLQ 482
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + ++ + ++
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKM---- 61
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 62 -LNHENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN 367
+P L +DLSR + L TL ++ N I +S LQ L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 368 HIVGEIPKELGKLNSLTKLILRGNQLTG-RLPTEIGSLIELEYLDFSANK 416
++ +G L +L +L + N + +LP +L LE+LD S+NK
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 471 FQICSLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDISDNQLQG 515
F I LK+L++LN++HN + +P F + L +D+S N++Q
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Query: 32 NVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGT 91
N++ + +Y I N N+ L L L +SF SFP+L LDLS
Sbjct: 9 NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 92 IPSQIGNLTKLSYISLDSNQL-SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSI 150
+L+ LS + L N + S + A GL + K+++ + N P + L ++
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTL 126
Query: 151 EELFLYSNHLNG-SLPPFLGNLSNIVRLYINNNSLSGSILTNI 192
+EL + N + LP + NL+N+ L +++N + T++
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 30 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 86
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 87 SLLGICLRSEGSPLVVLPYMKHGDL 111
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 39 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 95
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 96 SLLGICLRSEGSPLVVLPYMKHGDL 120
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
IG+G G+VY+ + V + K P +Q + F EV L + RH NI+ F G
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKILKVVDPTP-EQF---QAFRNEVAVLRKTRHVNILLFMG 99
Query: 692 FCS 694
+ +
Sbjct: 100 YMT 102
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 43 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 99
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 100 SLLGICLRSEGSPLVVLPYMKHGDL 124
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 38 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 94
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 95 SLLGICLRSEGSPLVVLPYMKHGDL 119
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 38 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 94
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 95 SLLGICLRSEGSPLVVLPYMKHGDL 119
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + ++ + ++
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKM---- 60
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 61 -LNHENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 624 NDFDAEYCIGNGGHGSVYR-AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
+ +D +G G G V+R E +G A K + +D++ E+Q ++ +R
Sbjct: 51 DHYDIHEELGTGAFGVVHRVTERATGNNFAAK----FVMTPHESDKETVRKEIQTMSVLR 106
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
H +V + ++YEF+ G L
Sbjct: 107 HPTLVNLHDAFEDDNEMVMIYEFMSGGEL 135
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 38 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 94
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 95 SLLGICLRSEGSPLVVLPYMKHGDL 119
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 32/161 (19%)
Query: 582 FILRKQKSDSGDR------QSSNQNPQGLFS-ILNFEGKLVYDEIVRE--------TNDF 626
FI+R QK G+R + +N QG+ S ++ Y EI+ E T D+
Sbjct: 328 FIIRPQKE--GERALPSIPKLANNEKQGVRSHTVSVSETDDYAEIIDEEDTYTMPSTRDY 385
Query: 627 DAEY-------CIGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLTEV 675
+ + CIG G G V++ S E VA+K + C + +++FL E
Sbjct: 386 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKN---CTSDSVREKFLQEA 442
Query: 676 QALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
+ + H +IVK G + +++ E G L + L
Sbjct: 443 LTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFLQ 482
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 36 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 92
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 93 SLLGICLRSEGSPLVVLPYMKHGDL 117
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEICINK 60
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEICINK 60
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 624 NDFDAEYCIGNGGHGSVYR-AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR 682
+ +D +G G G V+R E +G A K + +D++ E+Q ++ +R
Sbjct: 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAK----FVMTPHESDKETVRKEIQTMSVLR 212
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
H +V + ++YEF+ G L
Sbjct: 213 HPTLVNLHDAFEDDNEMVMIYEFMSGGEL 241
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 35 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 91
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 92 SLLGICLRSEGSPLVVLPYMKHGDL 116
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEICINK 60
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEICINA 60
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEV 675
E + ++ IG G G V++A +G+ VA+KK + ++KE L E+
Sbjct: 16 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKV-------LMENEKEGFPITALREI 68
Query: 676 QALTEIRHRNIVKFYGFCSHAQHS--------FLVYEFLERGSLAAILS 716
+ L ++H N+V C +LV++F E LA +LS
Sbjct: 69 KILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLS 116
>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
Length = 373
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEV 675
E + ++ IG G G V++A +G+ VA+KK + ++KE L E+
Sbjct: 16 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKV-------LMENEKEGFPITALREI 68
Query: 676 QALTEIRHRNIVKFYGFCSHAQHS--------FLVYEFLERGSLAAILS 716
+ L ++H N+V C +LV++F E LA +LS
Sbjct: 69 KILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLS 116
>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEV 675
E + ++ IG G G V++A +G+ VA+KK + ++KE L E+
Sbjct: 16 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKV-------LMENEKEGFPITALREI 68
Query: 676 QALTEIRHRNIVKFYGFCSHAQHS--------FLVYEFLERGSLAAILS 716
+ L ++H N+V C +LV++F E LA +LS
Sbjct: 69 KILQLLKHENVVNLIEICRTKASPYNRCKASIYLVFDFCEH-DLAGLLS 116
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEICINK 59
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEICINK 59
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQK--EFLTEVQALTEIRHRNIVKF 689
+G G GSV L + ++K ++ D + ++ EFL+E + + H N+++
Sbjct: 42 LGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRL 101
Query: 690 YGFCSHAQ-------------------HSFLVYEFLERG 709
G C H++L+Y LE G
Sbjct: 102 LGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETG 140
>pdb|3V4B|A Chain A, Crystal Structure Of An Enolase From The Soil Bacterium
Cellvibrio Japonicus (Target Efi-502161) With Bound Mg
And L-Tartrate
pdb|3V3W|A Chain A, Crystal Structure Of An Enolase From The Soil Bacterium
Cellvibrio Japonicus (Target Efi-502161) With Bound Mg
And Glycerol
Length = 424
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 643 AELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR 684
A+LPS EV + +K+ + IP A +KEF ++ L ++ HR
Sbjct: 195 ADLPSVEVWSTEKYLNYIPDVFAAVRKEFGPDIHLLHDVHHR 236
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 38 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 94
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 95 SLLGICLRSEGSPLVVLPYMKHGDL 119
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEICINK 60
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + ++ + ++
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKM---- 60
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 61 -LNHENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEICINK 58
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 59 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 90
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEICINK 59
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 351
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKE-----FLTEV 675
E + ++ IG G G V++A +G+ VA+KK + ++KE L E+
Sbjct: 15 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKV-------LMENEKEGFPITALREI 67
Query: 676 QALTEIRHRNIVKFYGFCSHAQHS--------FLVYEFLERGSLAAILS 716
+ L ++H N+V C +LV++F E LA +LS
Sbjct: 68 KILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLS 115
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 36 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 92
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 93 SLLGICLRSEGSPLVVLPYMKHGDL 117
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 37 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 93
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 94 SLLGICLRSEGSPLVVLPYMKHGDL 118
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEICINK 60
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 92
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEICINK 59
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + ++ + ++
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKM---- 60
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 61 -LNHENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEICINK 59
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN 367
+P L +DLSR + L TL ++ N I +S LQ L
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 368 HIVGEIPKELGKLNSLTKLILRGNQLTG-RLPTEIGSLIELEYLDFSANKFNN 419
++ +G L +L +L + N + +LP +L LE+LD S+NK +
Sbjct: 112 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 471 FQICSLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDISDNQLQG 515
F I LK+L++LN++HN + +P F + L +D+S N++Q
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Query: 32 NVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGT 91
N++ + +Y I N N+ L L L +SF SFP+L LDLS
Sbjct: 10 NITYQCEELNFYKIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTI 68
Query: 92 IPSQIGNLTKLSYISLDSNQL-SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSI 150
+L+ LS + L N + S + A GL + K+++ + N P + L ++
Sbjct: 69 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTL 127
Query: 151 EELFLYSNHLNG-SLPPFLGNLSNIVRLYINNNSLSGSILTNI 192
+EL + N + LP + NL+N+ L +++N + T++
Sbjct: 128 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIP----CDQIADQKEFLTEVQALTEIRHRNIV 687
IG G G VY L + KK H ++ I + +FLTE + + H N++
Sbjct: 33 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 89
Query: 688 KFYGFCSHAQHS-FLVYEFLERGSL 711
G C ++ S +V +++ G L
Sbjct: 90 SLLGICLRSEGSPLVVLPYMKHGDL 114
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G +G V A + E VAVK ++ C + E+
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEICINK 59
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 632 IGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI 686
+G G GSV +G +VAVK+ S P DQ Q++F E+Q L + I
Sbjct: 15 LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGP-DQ---QRDFQREIQILKALHSDFI 70
Query: 687 VKFYG--FCSHAQHSFLVYEFLERGSLAAIL 715
VK+ G + LV E+L G L L
Sbjct: 71 VKYRGVSYGPGRPELRLVMEYLPSGCLRDFL 101
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN 367
+P L +DLSR + L TL ++ N I +S LQ L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 368 HIVGEIPKELGKLNSLTKLILRGNQLTG-RLPTEIGSLIELEYLDFSANKFNN 419
++ +G L +L +L + N + +LP +L LE+LD S+NK +
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 471 FQICSLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDISDNQLQG 515
F I LK+L++LN++HN + +P F + L +D+S N++Q
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 50/131 (38%), Gaps = 19/131 (14%)
Query: 303 EALGLYPNLTFIDLSRNNFYGEISSNWGKCPK-------LGTLNVSMNNITGGIPREIGN 355
E + +P LT +DLS N GE CP L N M TG
Sbjct: 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222
Query: 356 MSQLQALDLSLNHIVGEI----PKEL--GKLNSLTKLILRGNQLTGRLPTEIGSLIELEY 409
Q +LDLS N + + P+ + LNSL Q+ LP +L
Sbjct: 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPA------KLRV 276
Query: 410 LDFSANKFNNS 420
LD S+N+ N +
Sbjct: 277 LDLSSNRLNRA 287
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN 367
+P L +DLSR + L TL ++ N I +S LQ L
Sbjct: 52 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 368 HIVGEIPKELGKLNSLTKLILRGNQLTG-RLPTEIGSLIELEYLDFSANKFNN 419
++ +G L +L +L + N + +LP +L LE+LD S+NK +
Sbjct: 112 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 471 FQICSLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDISDNQLQG 515
F I LK+L++LN++HN + +P F + L +D+S N++Q
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 104/285 (36%), Gaps = 9/285 (3%)
Query: 242 LTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNI 301
L L+ H G LP I L+ +++ N F + + SL + + GN ++
Sbjct: 282 LDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDL 340
Query: 302 -SEALGLYPNLTFIDLSRNNFYGEISSNW--GKCPKLGTLNVSMNNITGGIPREIGNMSQ 358
+ L NL +DLS ++ N L LN+S N G + Q
Sbjct: 341 GTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQ 400
Query: 359 LQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKF 417
L+ LD++ H+ + P L+ L L L L + L +L +L+ N F
Sbjct: 401 LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Query: 418 NN---SVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXXXXXXSELDASHNLFGGEIPFQIC 474
+ S + LD SHN G+ +
Sbjct: 461 QDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALS 520
Query: 475 SLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPN 519
LK L LN++ NN+ + P+ + SII++S N L N
Sbjct: 521 HLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSN 564
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 67 LRDFSFSSFPQLVHLDLSLNGFFGTIP-SQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
L D +F PQL LD++ P S NL L ++L L + L
Sbjct: 390 LEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQD 449
Query: 126 LKVLSFQFNEL-DGSIPPE--VCQLSSIEELFLYS-NHLNGSLPPFLGNLSNIVRLYINN 181
L+ L+ Q N DGSI + + S+E L L S N L+ F G L N+ L +++
Sbjct: 450 LRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHG-LRNVNHLDLSH 508
Query: 182 NSLSGSILTNIGNLKFLF 199
NSL+G + + +LK L+
Sbjct: 509 NSLTGDSMDALSHLKGLY 526
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 27/171 (15%)
Query: 357 SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANK 416
+++Q LDL+ H+ G +P + +NSL KL+L N S L L N
Sbjct: 277 TRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN- 334
Query: 417 FNNSVPEXXXXXXXXXXXXXXXXQFXXXXXXXXXXXXXXSELDASHNLFGGE--IPFQIC 474
+ +LD SH+ Q+
Sbjct: 335 ----------------------MRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLK 372
Query: 475 SLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRN 525
+L+ L+ LNLS+N GL F+ L ++D++ L P+S F+N
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS-PFQN 422
>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|B Chain B, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|C Chain C, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|D Chain D, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|E Chain E, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|F Chain F, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
Length = 285
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 632 IGNGGHGSVYRAELPSG----EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G+G G V+ E S + + K S +P +QI E++ L + H NI+
Sbjct: 30 LGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIE------AEIEVLKSLDHPNII 83
Query: 688 KFYGFCSHAQHSFLVYEFLERGSL 711
K + + ++V E E G L
Sbjct: 84 KIFEVFEDYHNMYIVMETCEGGEL 107
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN 367
+P L +DLSR + L TL ++ N I +S LQ L
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 112
Query: 368 HIVGEIPKELGKLNSLTKLILRGNQLTG-RLPTEIGSLIELEYLDFSANKFNN 419
++ +G L +L +L + N + +LP +L LE+LD S+NK +
Sbjct: 113 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 471 FQICSLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDISDNQLQG 515
F I LK+L++LN++HN + +P F + L +D+S N++Q
Sbjct: 120 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 632 IGNGGHGSVYRAEL-------PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-R 682
+G G G V AE P V VAVK ++D ++E++ + I +
Sbjct: 89 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 145
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
H+NI+ G C+ +++ E+ +G+L L
Sbjct: 146 HKNIINLLGACTQDGPLYVIVEYASKGNLREYL 178
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQI--ADQKEFLTEVQALTEIRHRNIVKF 689
IG G +G V A + K + QI D + TEV+ + ++ H NI +
Sbjct: 34 IGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARL 93
Query: 690 YGFCSHAQHSFLVYEFLERGSL 711
Y Q+ LV E G L
Sbjct: 94 YEVYEDEQYICLVMELCHGGHL 115
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 632 IGNGGHGSVYRAEL-------PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-R 682
+G G G V AE P V VAVK ++D ++E++ + I +
Sbjct: 35 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 91
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
H+NI+ G C+ +++ E+ +G+L L
Sbjct: 92 HKNIINLLGACTQDGPLYVIVEYASKGNLREYL 124
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 632 IGNGGHGSVYRAEL-------PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-R 682
+G G G V AE P V VAVK ++D ++E++ + I +
Sbjct: 30 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 86
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
H+NI+ G C+ +++ E+ +G+L L
Sbjct: 87 HKNIINLLGACTQDGPLYVIVEYASKGNLREYL 119
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 651 VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERG 709
VAVK S ++D ++E++ + I +H+NI+ G C+ +++ E+ +G
Sbjct: 104 VAVKMLKSDATEKDLSD---LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKG 160
Query: 710 SLAAILS 716
+L L
Sbjct: 161 NLREYLQ 167
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 290 VRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG-- 347
++L NNLT + L YP L +DLS N + + K +L L +S N +
Sbjct: 231 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288
Query: 348 --GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT 394
G P + L+ LDLS NH++ + + + + L L L N +
Sbjct: 289 LYGQP-----IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 632 IGNGGHGSVYRAEL-------PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-R 682
+G G G V AE P V VAVK ++D ++E++ + I +
Sbjct: 32 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGK 88
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
H+NI+ G C+ +++ E+ +G+L L
Sbjct: 89 HKNIINLLGACTQDGPLYVIVEYASKGNLREYL 121
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 632 IGNGGHGSVYRAEL-------PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-R 682
+G G G V AE P+ VAVK S ++D ++E++ + I +
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSD---LISEMEMMKMIGK 92
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
H+NI+ G C+ +++ E+ +G+L L
Sbjct: 93 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 126
>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
Length = 317
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 632 IGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
+G GG V E L G A+K+ I C + D++E E H NI++
Sbjct: 37 LGEGGFSYVDLVEGLHDGHFYALKR----ILCHEQQDREEAQREADMHRLFNHPNILRLV 92
Query: 691 GFCSH---AQH-SFLVYEFLERGSL 711
+C A+H ++L+ F +RG+L
Sbjct: 93 AYCLRERGAKHEAWLLLPFFKRGTL 117
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 53 VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISL----- 107
+T+I LR L+ DF ++ P LV +DLS N F P+Q N + L +
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRD 548
Query: 108 -DSNQLSGKIPAEVGL---LTHLKVLSFQFNELDGSIPPEVCQLS 148
N+ + P + L LT L++ S +++ I P + L
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLD 593
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 626 FDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+ E IG G G V ++ + +++ IP + D F E++ + + H N
Sbjct: 28 YTLENTIGRGSWGEV---KIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPN 84
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSL 711
I++ Y +LV E G L
Sbjct: 85 IIRLYETFEDNTDIYLVMELCTGGEL 110
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 626 FDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685
+ E IG G G V ++ + +++ IP + D F E++ + + H N
Sbjct: 11 YTLENTIGRGSWGEV---KIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPN 67
Query: 686 IVKFYGFCSHAQHSFLVYEFLERGSL 711
I++ Y +LV E G L
Sbjct: 68 IIRLYETFEDNTDIYLVMELCTGGEL 93
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN 367
+P L +DLSR + L TL ++ N I +S LQ L
Sbjct: 53 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALET 112
Query: 368 HIVGEIPKELGKLNSLTKLILRGNQLTG-RLPTEIGSLIELEYLDFSANKFNN 419
++ +G L +L +L + N + +LP +L LE+LD S+NK +
Sbjct: 113 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 471 FQICSLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDISDNQLQG 515
F I LK+L++LN++HN + +P F + L +D+S N++Q
Sbjct: 120 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Query: 32 NVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGT 91
N++ + +Y I N N+ L L L +SF SFP+L LDLS
Sbjct: 11 NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTI 69
Query: 92 IPSQIGNLTKLSYISLDSNQL-SGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSI 150
+L+ LS + L N + S + A GL + K+++ + N P + L ++
Sbjct: 70 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFP-IGHLKTL 128
Query: 151 EELFLYSNHLNG-SLPPFLGNLSNIVRLYINNNSLSGSILTNI 192
+EL + N + LP + NL+N+ L +++N + T++
Sbjct: 129 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
F ++++ H+++V YG C + LV EF++ GSL L
Sbjct: 59 FFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLK 104
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 651 VAVKKFHSSIPCDQIADQKE-FLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLER 708
VAVK S+ AD+KE ++E++ ++ + +H NIV G C+H ++ E+
Sbjct: 64 VAVKMLKSTAH----ADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCY 119
Query: 709 GSL 711
G L
Sbjct: 120 GDL 122
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 651 VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERG 709
VAVK S ++D ++E++ + I +H+NI+ G C+ +++ E+ +G
Sbjct: 63 VAVKMLKSDATEKDLSD---LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKG 119
Query: 710 SLAAILS 716
+L L
Sbjct: 120 NLREYLQ 126
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 651 VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERG 709
VAVK S ++D ++E++ + I +H+NI+ G C+ +++ E+ +G
Sbjct: 63 VAVKMLKSDATEKDLSD---LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKG 119
Query: 710 SLAAILS 716
+L L
Sbjct: 120 NLREYLQ 126
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 651 VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERG 709
VAVK S ++D ++E++ + I +H+NI+ G C+ +++ E+ +G
Sbjct: 63 VAVKMLKSDATEKDLSD---LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKG 119
Query: 710 SLAAILS 716
+L L
Sbjct: 120 NLREYLQ 126
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 651 VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERG 709
VAVK S ++D ++E++ + I +H+NI+ G C+ +++ E+ +G
Sbjct: 55 VAVKMLKSDATEKDLSD---LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKG 111
Query: 710 SLAAILS 716
+L L
Sbjct: 112 NLREYLQ 118
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 651 VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERG 709
VAVK S ++D ++E++ + I +H+NI+ G C+ +++ E+ +G
Sbjct: 52 VAVKMLKSDATEKDLSD---LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKG 108
Query: 710 SLAAILS 716
+L L
Sbjct: 109 NLREYLQ 115
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 651 VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLERG 709
VAVK S ++D ++E++ + I +H+NI+ G C+ +++ E+ +G
Sbjct: 56 VAVKMLKSDATEKDLSD---LISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKG 112
Query: 710 SLAAILS 716
+L L
Sbjct: 113 NLREYLQ 119
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 632 IGNGGHGSVYRAEL-------PSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-R 682
+G G G V AE P+ VAVK S ++D ++E++ + I +
Sbjct: 21 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSD---LISEMEMMKMIGK 77
Query: 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
H+NI+ G C+ +++ E+ +G+L L
Sbjct: 78 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 111
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 632 IGNGGHGSVYRAELPSG------EVVAVKKFHSSIPCDQIAD----QKEFLTEVQALTEI 681
+G+G +G V + +G +V+ +F D + +E E+ L +
Sbjct: 44 LGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSL 103
Query: 682 RHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
H NI+K + ++ +LV EF E G L
Sbjct: 104 DHPNIIKLFDVFEDKKYFYLVTEFYEGGEL 133
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 290 VRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG-- 347
++L NNLT + L YP L +DLS N + + K +L L +S N +
Sbjct: 237 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294
Query: 348 --GIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQL 393
G P + L+ LDLS NH++ + + + + L L L N +
Sbjct: 295 LYGQP-----IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 39/149 (26%)
Query: 230 IPPSFGNSM--LTWLTLSGNHFTG-YLPHNICRGGL--LEAFIVSENHFQGTIPESLRNC 284
+P SF + L +L LS N YL ++ C+G L+ ++S+NH
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH------------ 398
Query: 285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYG-EISSNWGKCPKLGTLNVS-- 341
L TG I L NLT +D+SRN F+ S W + K+ LN+S
Sbjct: 399 -------LRSMQKTGEILLTLK---NLTSLDISRNTFHPMPDSCQWPE--KMRFLNLSST 446
Query: 342 -MNNITGGIPREIGNMSQLQALDLSLNHI 369
+ + IP+ L+ LD+S N++
Sbjct: 447 GIRVVKTCIPQ------TLEVLDVSNNNL 469
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 632 IGNGGHGSVY--RAELPSGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV 687
+G+G +G V + +L E + +KK SS+ ++ L EV L ++ H NI+
Sbjct: 12 LGSGAYGEVLLCKDKLTGAERAIKIIKK--SSVTT--TSNSGALLDEVAVLKQLDHPNIM 67
Query: 688 KFYGFCSHAQHSFLVYEFLERGSL 711
K Y F ++ +LV E G L
Sbjct: 68 KLYEFFEDKRNYYLVMEVYRGGEL 91
>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From
Toxoplasma Gondii, 541.m00134, Kinase Domain
Length = 287
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 632 IGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
+G+G +G V + +G A+K S ++ L EV L ++ H NI+K Y
Sbjct: 29 LGSGAYGEVLLCKDKLTGAERAIKIIKKS-SVTTTSNSGALLDEVAVLKQLDHPNIMKLY 87
Query: 691 GFCSHAQHSFLVYEFLERGSL 711
F ++ +LV E G L
Sbjct: 88 EFFEDKRNYYLVMEVYRGGEL 108
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLT 673
EI RE + CIG G G V++ S E VA+K + C + +++FL
Sbjct: 6 EIQRERIELGR--CIGEGQFGDVHQGIYMSPENPAMAVAIKTCKN---CTSDSVREKFLQ 60
Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
E + + H +IVK G + +++ E G L + L
Sbjct: 61 EALTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFL 101
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 671 FLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716
F ++++ H+++V YG C + LV EF++ GSL L
Sbjct: 59 FFEAASMMSKLSHKHLVLNYGVCFCGDENILVQEFVKFGSLDTYLK 104
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLT 673
EI RE + CIG G G V++ S E VA+K + C + +++FL
Sbjct: 34 EIQRERIELGR--CIGEGQFGDVHQGIYMSPENPALAVAIKTCKN---CTSDSVREKFLQ 88
Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
E + + H +IVK G + +++ E G L + L
Sbjct: 89 EALTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFL 129
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 26/153 (16%)
Query: 52 RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ 111
++ + LRN + ++ ++F+ P L+ LDL G L KL YIS
Sbjct: 148 KLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL-------------GELKKLEYIS--EGA 191
Query: 112 LSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNL 171
G L +LK L+ + P + L +EEL + NH P L
Sbjct: 192 FEG--------LFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGL 241
Query: 172 SNIVRLYINNNSLSGSILTNIGNLKFLFELDLS 204
S++ +L++ N+ +S L L EL+L+
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLT 673
EI RE + CIG G G V++ S E VA+K + C + +++FL
Sbjct: 11 EIQRERIELGR--CIGEGQFGDVHQGIYMSPENPALAVAIKTCKN---CTSDSVREKFLQ 65
Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
E + + H +IVK G + +++ E G L + L
Sbjct: 66 EALTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFL 106
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 651 VAVKKFHSSIPCDQIADQKE-FLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLER 708
VAVK S+ AD+KE ++E++ ++ + +H NIV G C+H ++ E+
Sbjct: 71 VAVKMLKSTAH----ADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCY 126
Query: 709 GSL 711
G L
Sbjct: 127 GDL 129
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLT 673
EI RE + CIG G G V++ S E VA+K + C + +++FL
Sbjct: 6 EIQRERIELGR--CIGEGQFGDVHQGIYMSPENPALAVAIKTCKN---CTSDSVREKFLQ 60
Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
E + + H +IVK G + +++ E G L + L
Sbjct: 61 EALTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFL 101
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLT 673
EI RE + CIG G G V++ S E VA+K + C + +++FL
Sbjct: 6 EIQRERIELGR--CIGEGQFGDVHQGIYMSPENPAMAVAIKTCKN---CTSDSVREKFLQ 60
Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
E + + H +IVK G + +++ E G L + L
Sbjct: 61 EALTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFL 101
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 623 TNDFDAEYCIGNGGHGSVYRA-ELPSGEVVAVK--KFHSSIPCDQIADQKEFLTEVQALT 679
D+D +G G G V A + E VAVK ++ C + E+
Sbjct: 5 VEDWDLVQTLGEGAAGEVQLAVNRVTEEAVAVKIVDMKRAVDCPE-----NIKKEICINK 59
Query: 680 EIRHRNIVKFYGFCSHAQHSFLVYEFLERGSL 711
+ H N+VKFYG +L E+ G L
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGEL 91
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 39/149 (26%)
Query: 230 IPPSFGNSM--LTWLTLSGNHFTG-YLPHNICRGGL--LEAFIVSENHFQGTIPESLRNC 284
+P SF + L +L LS N YL ++ C+G L+ ++S+NH
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH------------ 372
Query: 285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYG-EISSNWGKCPKLGTLNVS-- 341
L TG I L NLT +D+SRN F+ S W + K+ LN+S
Sbjct: 373 -------LRSMQKTGEILLTLK---NLTSLDISRNTFHPMPDSCQWPE--KMRFLNLSST 420
Query: 342 -MNNITGGIPREIGNMSQLQALDLSLNHI 369
+ + IP+ L+ LD+S N++
Sbjct: 421 GIRVVKTCIPQ------TLEVLDVSNNNL 443
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLT 673
EI RE + CIG G G V++ S E VA+K + C + +++FL
Sbjct: 6 EIQRERIELGR--CIGEGQFGDVHQGIYMSPENPAMAVAIKTCKN---CTSDSVREKFLQ 60
Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
E + + H +IVK G + +++ E G L + L
Sbjct: 61 EALTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFL 101
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLT 673
EI RE + CIG G G V++ S E VA+K + C + +++FL
Sbjct: 9 EIQRERIELGR--CIGEGQFGDVHQGIYMSPENPALAVAIKTCKN---CTSDSVREKFLQ 63
Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
E + + H +IVK G + +++ E G L + L
Sbjct: 64 EALTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFL 104
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 647 SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF--LVYE 704
+GE+VAVK + + K+ E+ L + H +I+K+ G C A + LV E
Sbjct: 59 TGEMVAVKALKADAGPQHRSGWKQ---EIDILRTLYHEHIIKYKGCCEDAGAASLQLVME 115
Query: 705 FLERGSLAAIL 715
++ GSL L
Sbjct: 116 YVPLGSLRDYL 126
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 632 IGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFY 690
+G GG +VY AE + VA+K P ++ K F EV +++ H+NIV
Sbjct: 19 LGGGGMSTVYLAEDTILNIKVAIKAIFIP-PREKEETLKRFEREVHNSSQLSHQNIVSMI 77
Query: 691 GFCSHAQHSFLVYEFLERGSLA 712
+LV E++E +L+
Sbjct: 78 DVDEEDDCYYLVMEYIEGPTLS 99
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 625 DFDAEY-------CIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQ 676
++D EY +G G +G VY S +V +A+K+ IP + E+
Sbjct: 2 EYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKE----IPERDSRYSQPLHEEIA 57
Query: 677 ALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
++H+NIV++ G S + E + GSL+A+L
Sbjct: 58 LHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALL 96
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 651 VAVKKFHSSIPCDQIADQKE-FLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLER 708
VAVK S+ AD+KE ++E++ ++ + +H NIV G C+H ++ E+
Sbjct: 79 VAVKMLKSTAH----ADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCY 134
Query: 709 GSL 711
G L
Sbjct: 135 GDL 137
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 651 VAVKKFHSSIPCDQIADQKE-FLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLER 708
VAVK S+ AD+KE ++E++ ++ + +H NIV G C+H ++ E+
Sbjct: 79 VAVKMLKSTAH----ADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCY 134
Query: 709 GSL 711
G L
Sbjct: 135 GDL 137
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLT 673
EI RE + CIG G G V++ S E VA+K + C + +++FL
Sbjct: 3 EIQRERIELGR--CIGEGQFGDVHQGIYMSPENPALAVAIKTCKN---CTSDSVREKFLQ 57
Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
E + + H +IVK G + +++ E G L + L
Sbjct: 58 EALTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFL 98
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 651 VAVKKFHSSIPCDQIADQKE-FLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLER 708
VAVK S+ AD+KE ++E++ ++ + +H NIV G C+H ++ E+
Sbjct: 79 VAVKMLKSTAH----ADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCY 134
Query: 709 GSL 711
G L
Sbjct: 135 GDL 137
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 618 EIVRETNDFDAEYCIGNGGHGSVYRAELPSGE----VVAVKKFHSSIPCDQIADQKEFLT 673
EI RE + CIG G G V++ S E VA+K + C + +++FL
Sbjct: 8 EIQRERIELGR--CIGEGQFGDVHQGIYMSPENPALAVAIKTCKN---CTSDSVREKFLQ 62
Query: 674 EVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
E + + H +IVK G + +++ E G L + L
Sbjct: 63 EALTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFL 103
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 625 DFDAEY-------CIGNGGHGSVYRAELPSGEV-VAVKKFHSSIPCDQIADQKEFLTEVQ 676
++D EY +G G +G VY S +V +A+K+ IP + E+
Sbjct: 16 EYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKE----IPERDSRYSQPLHEEIA 71
Query: 677 ALTEIRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715
++H+NIV++ G S + E + GSL+A+L
Sbjct: 72 LHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALL 110
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 26/153 (16%)
Query: 52 RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ 111
++ + LRN + ++ ++F+ P L LDL G L +LSYIS
Sbjct: 137 KLKELWLRNNPIE-SIPSYAFNRIPSLRRLDL-------------GELKRLSYIS--EGA 180
Query: 112 LSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNL 171
G L++L+ L+ L P + L ++EL L NHL+ P L
Sbjct: 181 FEG--------LSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Query: 172 SNIVRLYINNNSLSGSILTNIGNLKFLFELDLS 204
++ +L++ + + NL+ L E++L+
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 651 VAVKKFHSSIPCDQIADQKE-FLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVYEFLER 708
VAVK S+ AD+KE ++E++ ++ + +H NIV G C+H ++ E+
Sbjct: 79 VAVKMLKSTAH----ADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCY 134
Query: 709 GSL 711
G L
Sbjct: 135 GDL 137
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 98 NLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLSSIEELFLY 156
LT+L+ +SL NQ+ LT L +L N+L S+P V +L+ ++EL L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALD 108
Query: 157 SNHLNGSLPPFLGNLSNIVRLYINNN 182
+N L L+++ +++++ N
Sbjct: 109 TNQLKSVPDGIFDRLTSLQKIWLHTN 134
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 7/145 (4%)
Query: 277 IPESLRNCTSLIRVRLNGNNLTGNISEALGLY---PNLTFIDLSRNNFYGEISSNWGKCP 333
IPE + T+ +RLN N T + EA G++ P L I+ S N +
Sbjct: 26 IPEHIPQYTA--ELRLNNNEFT--VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81
Query: 334 KLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQL 393
+ + ++ N + + + L+ L L N I L+S+ L L NQ+
Sbjct: 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141
Query: 394 TGRLPTEIGSLIELEYLDFSANKFN 418
T P +L L L+ AN FN
Sbjct: 142 TTVAPGAFDTLHSLSTLNLLANPFN 166
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
+G G G V+R S + + KF DQ+ +KE + L RHRNI+ +
Sbjct: 13 LGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKE----ISILNIARHRNILHLHE 68
Query: 692 FCSHAQHSFLVYEFL 706
+ +++EF+
Sbjct: 69 SFESMEELVMIFEFI 83
>pdb|3SY3|A Chain A, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis
pdb|3SY3|B Chain B, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis
pdb|3SY3|C Chain C, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis
pdb|3SY3|D Chain D, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis
pdb|3TJ7|A Chain A, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis In Complex With Amp
pdb|3TJ7|B Chain B, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis In Complex With Amp
pdb|3TJ7|C Chain C, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis In Complex With Amp
pdb|3TJ7|D Chain D, Gbaa_1210 Protein, A Putative Adenylate Cyclase, From
Bacillus Anthracis In Complex With Amp
Length = 195
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 255 HNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLT 298
H +C+ +E F NH+ T SL+ S +R+R G T
Sbjct: 22 HALCKSFSIEVFTKQVNHYFETPNSSLKEAGSALRIRHKGETYT 65
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 626 FDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLT-EVQALTEIRH 683
F+ + +G G V AE +G++ AVK IP + ++ + E+ L +I+H
Sbjct: 24 FEFKETLGTGAFSEVVLAEEKATGKLFAVK----CIPKKALKGKESSIENEIAVLRKIKH 79
Query: 684 RNIVKFYGFCSHAQHSFLVYEFLERGSL 711
NIV H +LV + + G L
Sbjct: 80 ENIVALEDIYESPNHLYLVMQLVSGGEL 107
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 124/352 (35%), Gaps = 89/352 (25%)
Query: 66 TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTH 125
TL F+SFP L L+L+ N P NL L + L SN+L IP +G+ T
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIP--LGVFT- 101
Query: 126 LKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLS 185
LSN+ +L I+ N
Sbjct: 102 --------------------------------------------GLSNLTKLDISEN--- 114
Query: 186 GSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLS 245
K + LD F +L NLKSL + DN L + +S
Sbjct: 115 ----------KIVILLDYMF-----QDLYNLKSLEVGDNDL---------------VYIS 144
Query: 246 GNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEAL 305
F+G LE + + + E+L + LI +RL N+ +
Sbjct: 145 HRAFSGL--------NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196
Query: 306 GLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLS 365
L +++S + ++ N L +L+++ N+T + ++ L+ L+LS
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256
Query: 366 LNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKF 417
N I L +L L ++ L G QL P L L L+ S N+
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 21/85 (24%)
Query: 148 SSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLP 207
++ + L+LY N + P L+ + RL ++NN L+ LP
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-------------------LTVLP 78
Query: 208 LSV-GNLTNLKSLGLMDNHLSGSIP 231
V LT L L L DN L SIP
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLK-SIP 102
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 456 SELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQL 513
+E+ N P K L +++LS+N +S L P+ F+G+ L+ + + N++
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine
Pyrophosphorylase From Entamoeba Histolytica
Length = 405
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
Query: 601 PQGLFSILNFEGKLVYDEIVRETNDFDAEYCIGNGGHGSVYRA 643
PQG+ +++F GK++Y++ D Y N GHG +++A
Sbjct: 129 PQGMLPVVDFNGKILYEKK-------DKPYMAPN-GHGGLFKA 163
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 477 KSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQL 513
K L +++LS+N +S L P+ F+G+ L+ + + N++
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 29/70 (41%)
Query: 72 FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF 131
FS F L L L+ N + LT L ++LD+NQL LT L+ +
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWL 354
Query: 132 QFNELDGSIP 141
N D S P
Sbjct: 355 HTNPWDCSCP 364
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 632 IGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691
+G G V + EL +G VAVK + + + E+Q L RH +I+K Y
Sbjct: 26 VGTFGKVKVGKHEL-TGHKVAVKILNRQ-KIRSLDVVGKIRREIQNLKLFRHPHIIKLYQ 83
Query: 692 FCSHAQHSFLVYEFLERGSL 711
S F+V E++ G L
Sbjct: 84 VISTPSDIFMVMEYVSGGEL 103
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 21/85 (24%)
Query: 148 SSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLP 207
++ + L+LY N + P L+ + RL ++NN L+ LP
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-------------------LTVLP 70
Query: 208 LSV-GNLTNLKSLGLMDNHLSGSIP 231
V LT L L L DN L SIP
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLK-SIP 94
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 21/85 (24%)
Query: 148 SSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLP 207
++ + L+LY N + P L+ + RL ++NN L+ LP
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQ-------------------LTVLP 70
Query: 208 LSV-GNLTNLKSLGLMDNHLSGSIP 231
V LT L L L DN L SIP
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLK-SIP 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,292,765
Number of Sequences: 62578
Number of extensions: 841611
Number of successful extensions: 3556
Number of sequences better than 100.0: 549
Number of HSP's better than 100.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 312
Number of HSP's that attempted gapping in prelim test: 2440
Number of HSP's gapped (non-prelim): 1040
length of query: 716
length of database: 14,973,337
effective HSP length: 106
effective length of query: 610
effective length of database: 8,340,069
effective search space: 5087442090
effective search space used: 5087442090
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)