Query 041300
Match_columns 716
No_of_seqs 672 out of 5068
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 09:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.4E-71 1.2E-75 643.8 45.9 534 2-548 11-749 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.3E-57 1.5E-61 525.3 36.3 460 51-515 200-742 (768)
3 3t6q_A CD180 antigen; protein- 100.0 2.4E-54 8E-59 491.2 43.0 486 51-539 33-562 (606)
4 3t6q_A CD180 antigen; protein- 100.0 1.3E-54 4.5E-59 493.2 40.9 476 55-536 16-535 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-53 3.6E-58 492.4 44.4 489 51-540 25-625 (680)
6 4eco_A Uncharacterized protein 100.0 3.1E-56 1.1E-60 506.3 22.9 475 2-516 29-602 (636)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-53 8.7E-58 482.7 39.6 493 38-540 5-561 (606)
8 4ecn_A Leucine-rich repeat pro 100.0 6.7E-54 2.3E-58 494.3 32.3 464 2-515 268-841 (876)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-52 3.8E-57 493.3 36.8 485 40-539 14-562 (844)
10 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-50 5.6E-55 465.8 48.1 478 55-536 8-572 (680)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-50 6.7E-55 458.9 38.2 459 51-520 56-564 (606)
12 2z63_A TOLL-like receptor 4, v 100.0 2.8E-50 9.6E-55 454.4 38.5 462 51-522 28-539 (570)
13 3j0a_A TOLL-like receptor 5; m 100.0 3.8E-49 1.3E-53 463.3 35.4 455 51-519 48-565 (844)
14 2z81_A CD282 antigen, TOLL-lik 100.0 2E-49 7E-54 445.1 31.4 468 39-519 3-515 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 1.8E-47 6E-52 431.6 36.8 472 56-539 12-533 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-46 1.7E-50 417.5 34.6 476 45-539 2-512 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-45 8.5E-50 419.6 38.2 472 38-518 25-584 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 4.3E-46 1.5E-50 415.0 30.9 431 54-516 3-483 (520)
19 4eco_A Uncharacterized protein 100.0 1.9E-47 6.6E-52 434.1 20.1 452 76-541 81-604 (636)
20 4ecn_A Leucine-rich repeat pro 100.0 2E-45 6.8E-50 423.8 28.6 449 76-538 323-841 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 1E-45 3.4E-50 412.0 24.7 429 51-492 21-483 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-42 8.3E-47 394.8 40.1 487 38-539 20-582 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-43 6.3E-48 397.1 29.8 450 53-519 33-515 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 1.3E-41 4.5E-46 372.3 31.0 372 76-494 30-412 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.8E-42 3E-46 383.4 28.2 429 51-493 52-513 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 2.6E-41 8.7E-46 370.0 29.5 369 100-522 30-416 (455)
27 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-40 8.8E-45 342.1 19.4 289 2-368 5-302 (313)
28 1jl5_A Outer protein YOPM; leu 100.0 3.1E-39 1.1E-43 350.6 27.2 387 52-518 12-415 (454)
29 1jl5_A Outer protein YOPM; leu 100.0 7.5E-39 2.6E-43 347.6 27.1 384 74-537 9-409 (454)
30 2id5_A Lingo-1, leucine rich r 100.0 1.1E-37 3.9E-42 343.0 29.1 238 304-541 123-360 (477)
31 1o6v_A Internalin A; bacterial 100.0 4.1E-37 1.4E-41 337.0 33.4 345 75-491 45-389 (466)
32 1o6v_A Internalin A; bacterial 100.0 9.1E-37 3.1E-41 334.3 32.3 349 97-517 43-391 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 5E-37 1.7E-41 333.6 25.7 358 70-520 36-393 (457)
34 3bz5_A Internalin-J, INLJ; leu 100.0 5.1E-37 1.7E-41 333.5 24.7 354 51-498 42-395 (457)
35 2id5_A Lingo-1, leucine rich r 100.0 1.9E-36 6.6E-41 333.2 27.6 300 76-393 32-332 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 3.4E-35 1.2E-39 314.4 29.5 311 74-491 43-353 (390)
37 3oja_B Anopheles plasmodium-re 100.0 4.4E-35 1.5E-39 330.7 29.8 289 74-442 49-337 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 8.6E-35 3E-39 311.2 26.8 335 98-540 43-377 (390)
39 3oja_B Anopheles plasmodium-re 100.0 1.3E-34 4.3E-39 327.0 27.1 335 99-541 50-384 (597)
40 4fmz_A Internalin; leucine ric 100.0 1.8E-33 6E-38 296.2 29.0 103 72-182 40-142 (347)
41 4fmz_A Internalin; leucine ric 100.0 2.8E-33 9.6E-38 294.7 29.4 307 96-514 40-346 (347)
42 1ogq_A PGIP-2, polygalacturona 100.0 6.3E-34 2.2E-38 294.2 20.5 256 285-542 50-309 (313)
43 2ft3_A Biglycan; proteoglycan, 100.0 5.1E-32 1.8E-36 282.9 26.6 289 214-512 33-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 1.5E-31 5.2E-36 279.1 27.8 289 215-512 32-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-31 4E-36 280.1 24.8 288 101-464 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 2.7E-31 9.2E-36 277.3 27.4 131 333-464 192-330 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 5.4E-35 1.8E-39 320.4 -2.8 365 76-491 3-412 (461)
48 4fcg_A Uncharacterized protein 100.0 1.9E-32 6.6E-37 284.7 14.9 279 2-345 26-313 (328)
49 1z7x_W Ribonuclease inhibitor; 100.0 7.2E-35 2.5E-39 319.4 -6.7 361 100-516 3-413 (461)
50 2z80_A TOLL-like receptor 2, v 100.0 2.1E-29 7.1E-34 265.5 20.5 281 38-371 28-315 (353)
51 2z66_A Variable lymphocyte rec 100.0 2.3E-29 7.7E-34 259.7 19.9 250 265-518 11-265 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 1.4E-29 4.6E-34 266.9 17.4 279 215-519 32-319 (353)
53 3zyi_A Leucine-rich repeat-con 100.0 3.3E-28 1.1E-32 265.2 27.4 250 264-518 57-307 (452)
54 3zyj_A Leucine-rich repeat-con 100.0 4.9E-28 1.7E-32 262.9 26.4 249 265-518 47-296 (440)
55 3oja_A Leucine-rich immune mol 100.0 2.5E-30 8.7E-35 283.4 8.4 216 285-514 34-250 (487)
56 2z66_A Variable lymphocyte rec 100.0 1.5E-28 5.2E-33 253.5 19.2 257 262-519 29-292 (306)
57 3ogk_B Coronatine-insensitive 100.0 7.4E-31 2.5E-35 297.1 1.1 433 38-492 40-528 (592)
58 1ozn_A Reticulon 4 receptor; N 100.0 3.1E-28 1.1E-32 248.4 19.1 210 309-518 32-242 (285)
59 1ozn_A Reticulon 4 receptor; N 100.0 4.7E-28 1.6E-32 247.1 18.1 207 285-491 32-239 (285)
60 4fcg_A Uncharacterized protein 100.0 9.6E-28 3.3E-32 249.3 20.6 225 285-514 81-314 (328)
61 3zyi_A Leucine-rich repeat-con 100.0 3.3E-27 1.1E-31 257.3 25.7 228 261-490 75-303 (452)
62 3zyj_A Leucine-rich repeat-con 100.0 3.8E-27 1.3E-31 255.9 25.3 228 261-490 64-292 (440)
63 1wwl_A Monocyte differentiatio 100.0 2.7E-29 9.3E-34 259.5 5.9 247 259-515 41-310 (312)
64 3ogk_B Coronatine-insensitive 100.0 5.1E-30 1.7E-34 290.2 -0.6 408 92-516 65-528 (592)
65 3o53_A Protein LRIM1, AGAP0063 99.9 8.3E-29 2.8E-33 256.5 6.9 257 239-509 12-270 (317)
66 3g06_A SSPH2 (leucine-rich rep 99.9 4.3E-27 1.5E-31 262.7 20.8 86 357-451 221-306 (622)
67 1wwl_A Monocyte differentiatio 99.9 3.8E-28 1.3E-32 250.9 6.5 252 212-491 41-310 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.9 3.8E-28 1.3E-32 251.5 6.4 265 216-494 12-280 (317)
69 3g06_A SSPH2 (leucine-rich rep 99.9 5.4E-25 1.9E-29 245.8 28.8 262 215-519 41-302 (622)
70 2z62_A TOLL-like receptor 4, v 99.9 1.6E-25 5.6E-30 227.1 22.1 212 309-521 28-244 (276)
71 3oja_A Leucine-rich immune mol 99.9 3.6E-26 1.2E-30 250.4 15.8 237 259-509 32-270 (487)
72 2o6q_A Variable lymphocyte rec 99.9 5E-25 1.7E-29 222.6 19.9 217 38-299 3-219 (270)
73 2z62_A TOLL-like receptor 4, v 99.9 8E-25 2.7E-29 222.0 21.0 207 285-492 28-239 (276)
74 2p1m_B Transport inhibitor res 99.9 3.2E-28 1.1E-32 275.5 -4.7 427 38-490 33-519 (594)
75 2o6q_A Variable lymphocyte rec 99.9 2.6E-24 8.9E-29 217.3 23.8 205 311-518 18-222 (270)
76 2p1m_B Transport inhibitor res 99.9 8.5E-28 2.9E-32 272.1 -4.1 417 79-514 46-519 (594)
77 1p9a_G Platelet glycoprotein I 99.9 9.2E-24 3.1E-28 215.1 22.5 203 307-516 8-210 (290)
78 1p9a_G Platelet glycoprotein I 99.9 1.8E-23 6.1E-28 212.9 21.2 204 281-491 6-209 (290)
79 3rfs_A Internalin B, repeat mo 99.9 5.5E-24 1.9E-28 215.1 16.3 202 308-520 40-241 (272)
80 3goz_A Leucine-rich repeat-con 99.9 4.4E-25 1.5E-29 233.0 5.4 251 266-516 3-299 (362)
81 3rfs_A Internalin B, repeat mo 99.9 3.2E-23 1.1E-27 209.4 17.6 209 282-501 38-246 (272)
82 4glp_A Monocyte differentiatio 99.9 1.4E-23 4.7E-28 216.5 14.2 224 286-515 65-308 (310)
83 2xwt_C Thyrotropin receptor; s 99.9 6.7E-23 2.3E-27 202.9 16.7 196 310-511 32-236 (239)
84 2xwt_C Thyrotropin receptor; s 99.9 1.1E-22 3.6E-27 201.5 17.3 196 286-487 32-236 (239)
85 2ca6_A RAN GTPase-activating p 99.9 2.1E-24 7E-29 230.2 4.4 240 277-516 24-318 (386)
86 3m19_A Variable lymphocyte rec 99.9 3.2E-22 1.1E-26 199.6 19.7 180 335-517 16-195 (251)
87 3goz_A Leucine-rich repeat-con 99.9 4.4E-24 1.5E-28 225.4 5.0 251 242-492 3-299 (362)
88 2ast_B S-phase kinase-associat 99.9 1.2E-23 4.1E-28 219.9 6.7 231 285-520 70-312 (336)
89 2ca6_A RAN GTPase-activating p 99.9 9.8E-24 3.3E-28 225.0 5.9 239 255-493 26-319 (386)
90 2ast_B S-phase kinase-associat 99.9 1.3E-23 4.4E-28 219.7 5.6 235 261-499 70-315 (336)
91 4glp_A Monocyte differentiatio 99.9 1.4E-22 4.7E-27 209.0 13.2 154 331-490 143-307 (310)
92 1h6u_A Internalin H; cell adhe 99.9 7.3E-22 2.5E-26 203.1 18.4 192 308-515 40-231 (308)
93 3m19_A Variable lymphocyte rec 99.9 1.4E-21 4.8E-26 194.9 19.8 159 334-492 36-194 (251)
94 1h6u_A Internalin H; cell adhe 99.9 8.7E-22 3E-26 202.5 17.1 196 281-492 37-232 (308)
95 4ay9_X Follicle-stimulating ho 99.9 5.4E-21 1.8E-25 200.6 16.7 240 265-512 13-257 (350)
96 2o6s_A Variable lymphocyte rec 99.8 5.5E-21 1.9E-25 184.8 14.3 180 40-258 7-186 (208)
97 4ay9_X Follicle-stimulating ho 99.8 5.3E-20 1.8E-24 193.0 20.9 220 263-487 32-256 (350)
98 2o6s_A Variable lymphocyte rec 99.8 3.4E-20 1.2E-24 179.2 15.0 130 310-439 29-158 (208)
99 2v9t_B SLIT homolog 2 protein 99.8 2.4E-19 8.1E-24 174.5 16.8 155 360-517 14-168 (220)
100 3cvr_A Invasion plasmid antige 99.8 1.5E-19 5E-24 199.4 17.1 186 262-475 60-252 (571)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-19 7.3E-24 174.9 16.2 156 360-518 14-170 (220)
102 3cvr_A Invasion plasmid antige 99.8 1.9E-19 6.6E-24 198.5 17.1 186 238-451 60-252 (571)
103 2xot_A Amphoterin-induced prot 99.8 1.3E-19 4.4E-24 190.8 14.3 158 359-516 41-204 (361)
104 3e6j_A Variable lymphocyte rec 99.8 7.1E-19 2.4E-23 172.3 15.9 160 38-231 17-176 (229)
105 1h6t_A Internalin B; cell adhe 99.8 8.9E-19 3E-23 178.4 16.7 171 307-515 44-214 (291)
106 3e6j_A Variable lymphocyte rec 99.8 1.2E-18 4.2E-23 170.7 17.1 156 359-518 21-176 (229)
107 2v9t_B SLIT homolog 2 protein 99.8 1.2E-18 4.2E-23 169.4 16.5 151 337-490 15-165 (220)
108 1h6t_A Internalin B; cell adhe 99.8 7.1E-19 2.4E-23 179.1 15.3 184 267-466 30-213 (291)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-18 4.9E-23 169.0 16.4 152 337-491 15-167 (220)
110 2xot_A Amphoterin-induced prot 99.8 1.3E-18 4.3E-23 183.2 16.3 175 289-466 22-202 (361)
111 4b8c_D Glucose-repressible alc 99.8 3.1E-20 1E-24 212.6 3.0 218 3-256 132-360 (727)
112 1m9s_A Internalin B; cell inva 99.8 1.4E-18 4.9E-23 193.7 16.2 171 282-466 40-210 (605)
113 1m9s_A Internalin B; cell inva 99.8 1.6E-18 5.6E-23 193.3 16.1 191 238-444 22-212 (605)
114 4ezg_A Putative uncharacterize 99.8 5E-18 1.7E-22 162.3 13.2 150 357-514 44-194 (197)
115 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.5E-22 159.3 14.0 151 332-490 43-194 (197)
116 1xeu_A Internalin C; cellular 99.7 3.7E-18 1.3E-22 171.0 9.8 167 335-516 21-187 (263)
117 1w8a_A SLIT protein; signaling 99.7 9.8E-18 3.4E-22 159.3 11.9 132 384-518 11-143 (192)
118 3sb4_A Hypothetical leucine ri 99.7 9.9E-18 3.4E-22 174.1 11.6 222 283-508 99-328 (329)
119 4b8c_D Glucose-repressible alc 99.7 2.2E-18 7.6E-23 197.2 5.6 182 324-515 215-405 (727)
120 1dce_A Protein (RAB geranylger 99.7 5E-20 1.7E-24 204.3 -8.0 121 263-388 443-567 (567)
121 1xeu_A Internalin C; cellular 99.7 2.2E-17 7.5E-22 165.3 11.9 170 284-492 18-187 (263)
122 3sb4_A Hypothetical leucine ri 99.7 1.7E-17 6E-22 172.2 9.8 282 75-388 24-328 (329)
123 1dce_A Protein (RAB geranylger 99.7 7.4E-19 2.5E-23 194.9 -2.3 190 307-519 347-551 (567)
124 1w8a_A SLIT protein; signaling 99.7 6.5E-17 2.2E-21 153.7 11.1 129 360-491 11-140 (192)
125 2wfh_A SLIT homolog 2 protein 99.7 1.6E-16 5.4E-21 150.9 11.1 131 384-518 13-143 (193)
126 2o6r_A Variable lymphocyte rec 99.7 5.2E-16 1.8E-20 145.4 13.4 134 40-188 7-140 (177)
127 4asz_A BDNF/NT-3 growth factor 99.7 6.9E-17 2.4E-21 163.6 7.8 88 624-715 13-106 (299)
128 4fdw_A Leucine rich hypothetic 99.7 5.6E-15 1.9E-19 156.6 22.6 218 287-513 159-382 (401)
129 2ell_A Acidic leucine-rich nuc 99.7 4.5E-16 1.5E-20 144.5 12.5 132 357-490 24-160 (168)
130 4fdw_A Leucine rich hypothetic 99.7 5E-15 1.7E-19 157.0 22.0 251 229-490 127-383 (401)
131 4aoj_A High affinity nerve gro 99.7 8.9E-17 3E-21 165.2 8.2 88 624-715 41-134 (329)
132 4gt4_A Tyrosine-protein kinase 99.7 1.1E-16 3.8E-21 162.9 8.3 88 625-715 27-120 (308)
133 2ell_A Acidic leucine-rich nuc 99.6 5E-16 1.7E-20 144.2 11.4 136 379-516 22-162 (168)
134 2je0_A Acidic leucine-rich nuc 99.6 5.3E-16 1.8E-20 140.9 10.1 126 382-509 18-148 (149)
135 2o6r_A Variable lymphocyte rec 99.6 2.2E-15 7.6E-20 141.1 14.0 134 383-519 9-142 (177)
136 2je0_A Acidic leucine-rich nuc 99.6 7.1E-16 2.4E-20 140.0 10.1 127 357-485 17-148 (149)
137 2wfh_A SLIT homolog 2 protein 99.6 3.6E-15 1.2E-19 141.5 13.9 127 360-490 13-139 (193)
138 4b9d_A Serine/threonine-protei 99.6 9.4E-16 3.2E-20 157.6 9.5 90 624-715 24-114 (350)
139 3omv_A RAF proto-oncogene seri 99.6 1.4E-15 4.9E-20 154.0 8.9 88 623-715 35-122 (307)
140 4fs7_A Uncharacterized protein 99.6 1.7E-13 5.8E-18 145.9 24.4 328 66-434 61-393 (394)
141 4aw0_A HPDK1, 3-phosphoinositi 99.6 9.4E-16 3.2E-20 154.9 6.3 91 624-715 32-123 (311)
142 4fs7_A Uncharacterized protein 99.6 1.2E-13 4.2E-18 146.9 22.9 81 88-171 59-139 (394)
143 3fpq_A Serine/threonine-protei 99.6 5.9E-15 2E-19 148.3 9.1 88 626-715 28-120 (290)
144 4fih_A Serine/threonine-protei 99.5 5.1E-15 1.7E-19 151.9 8.0 88 624-715 74-162 (346)
145 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-14 4.8E-19 135.4 10.1 16 497-512 136-151 (176)
146 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-14 4.7E-19 135.5 9.4 135 352-491 14-154 (176)
147 3hmm_A TGF-beta receptor type- 99.5 6.1E-15 2.1E-19 150.3 7.5 87 624-716 3-93 (303)
148 4fie_A Serine/threonine-protei 99.5 1.2E-14 3.9E-19 153.1 8.8 88 624-715 151-239 (423)
149 3hyh_A Carbon catabolite-derep 99.5 1.3E-14 4.4E-19 144.5 7.8 90 624-715 13-103 (275)
150 4g31_A Eukaryotic translation 99.5 2E-14 7E-19 145.7 9.0 88 625-715 6-106 (299)
151 1ds9_A Outer arm dynein; leuci 99.5 2.3E-16 7.7E-21 150.8 -6.3 151 357-514 18-185 (198)
152 4g3f_A NF-kappa-beta-inducing 99.5 1.3E-14 4.3E-19 148.5 6.2 84 623-715 57-141 (336)
153 4ase_A Vascular endothelial gr 99.5 1.6E-14 5.5E-19 149.6 6.5 97 617-716 57-161 (353)
154 3ubd_A Ribosomal protein S6 ki 99.5 5.5E-15 1.9E-19 149.3 2.5 90 624-715 24-117 (304)
155 1ds9_A Outer arm dynein; leuci 99.5 2.8E-16 9.5E-21 150.2 -6.8 132 352-490 43-185 (198)
156 3g39_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 126.6 12.0 108 408-518 12-119 (170)
157 3g39_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 127.2 11.3 103 55-161 13-115 (170)
158 2r9u_A Variable lymphocyte rec 99.4 3.1E-13 1.1E-17 125.7 11.3 104 54-161 15-118 (174)
159 2r9u_A Variable lymphocyte rec 99.4 4.6E-13 1.6E-17 124.6 12.1 108 408-518 15-122 (174)
160 4gt6_A Cell surface protein; l 99.4 5.8E-11 2E-15 126.2 25.0 329 66-417 53-390 (394)
161 4gt6_A Cell surface protein; l 99.4 8.5E-11 2.9E-15 124.9 25.9 93 88-182 51-147 (394)
162 4b99_A Mitogen-activated prote 99.4 6.7E-13 2.3E-17 140.0 7.9 90 624-716 54-150 (398)
163 3uto_A Twitchin; kinase, muscl 99.4 1E-12 3.6E-17 145.6 9.8 88 624-715 157-245 (573)
164 4f9c_A Cell division cycle 7-r 99.3 1.3E-12 4.4E-17 136.2 9.1 92 619-716 16-112 (361)
165 3un9_A NLR family member X1; l 99.3 8.7E-14 3E-18 146.0 -1.1 88 404-491 154-253 (372)
166 3un9_A NLR family member X1; l 99.3 7.9E-14 2.7E-18 146.3 -1.6 143 333-475 101-261 (372)
167 2nru_A Interleukin-1 receptor- 99.3 5.4E-12 1.9E-16 129.4 11.1 103 612-715 13-121 (307)
168 3v5w_A G-protein coupled recep 99.3 1.6E-12 5.5E-17 143.4 7.5 92 624-715 189-283 (689)
169 3uim_A Brassinosteroid insensi 99.3 1.5E-12 5.1E-17 134.9 6.9 101 612-715 18-118 (326)
170 2qkw_B Protein kinase; three-h 99.3 1.5E-12 5E-17 134.6 6.3 97 615-715 30-126 (321)
171 3uqc_A Probable conserved tran 99.3 6.1E-12 2.1E-16 127.4 9.5 92 624-716 31-123 (286)
172 2c30_A Serine/threonine-protei 99.3 8.5E-12 2.9E-16 128.7 10.8 101 612-716 23-134 (321)
173 2ifg_A High affinity nerve gro 99.3 9E-12 3.1E-16 130.2 10.5 107 40-161 8-116 (347)
174 3fe3_A MAP/microtubule affinit 99.3 9.9E-12 3.4E-16 128.4 9.7 91 623-715 14-105 (328)
175 2qol_A Ephrin receptor; recept 99.3 5.1E-12 1.7E-16 133.2 7.4 89 624-715 45-137 (373)
176 2ifg_A High affinity nerve gro 99.2 1.6E-11 5.3E-16 128.3 10.2 104 80-186 12-117 (347)
177 3zgw_A Maternal embryonic leuc 99.2 1.2E-11 4.1E-16 128.6 9.0 90 623-715 9-99 (347)
178 3p86_A Serine/threonine-protei 99.2 6.6E-12 2.3E-16 128.7 6.8 92 621-715 34-125 (309)
179 3s95_A LIMK-1, LIM domain kina 99.2 2.2E-11 7.5E-16 125.0 10.6 88 624-715 10-98 (310)
180 4hcu_A Tyrosine-protein kinase 99.2 1.3E-11 4.3E-16 124.0 8.6 87 624-715 10-96 (269)
181 4aw2_A Serine/threonine-protei 99.2 3.8E-12 1.3E-16 136.5 4.9 99 616-715 66-165 (437)
182 3kul_A Ephrin type-A receptor 99.2 1.3E-11 4.3E-16 127.7 8.5 89 624-715 49-141 (325)
183 2psq_A Fibroblast growth facto 99.2 1.3E-11 4.5E-16 129.9 8.7 90 623-715 80-178 (370)
184 3cbl_A C-FES, proto-oncogene t 99.2 6.2E-12 2.1E-16 132.9 6.2 91 622-715 112-203 (377)
185 2yab_A Death-associated protei 99.2 1.9E-11 6.4E-16 127.9 9.8 92 624-715 12-106 (361)
186 4eqm_A Protein kinase; transfe 99.2 2.1E-11 7.1E-16 124.1 9.8 91 624-715 11-102 (294)
187 3v8s_A RHO-associated protein 99.2 4E-12 1.4E-16 135.2 4.3 98 617-715 62-160 (410)
188 3qd2_B Eukaryotic translation 99.2 2.1E-11 7.1E-16 126.4 9.5 71 624-697 6-77 (332)
189 3a62_A Ribosomal protein S6 ki 99.2 1.1E-11 3.7E-16 128.3 7.4 92 624-715 17-112 (327)
190 3fxz_A Serine/threonine-protei 99.2 2.3E-11 7.8E-16 124.0 9.3 89 623-715 19-108 (297)
191 2vd5_A DMPK protein; serine/th 99.2 6.8E-12 2.3E-16 133.5 5.4 99 616-715 53-152 (412)
192 3gen_A Tyrosine-protein kinase 99.2 2.3E-11 7.8E-16 123.1 8.9 88 623-715 23-110 (283)
193 1qcf_A Haematopoetic cell kina 99.2 1.8E-11 6.3E-16 132.6 8.5 89 621-715 185-273 (454)
194 3sxs_A Cytoplasmic tyrosine-pr 99.2 2E-11 7E-16 122.3 8.1 88 623-715 7-94 (268)
195 2bdw_A Hypothetical protein K1 99.2 2.4E-11 8.4E-16 127.4 9.0 91 623-715 28-119 (362)
196 2y0a_A Death-associated protei 99.2 3.1E-11 1.1E-15 124.8 9.5 92 624-715 11-105 (326)
197 1o6l_A RAC-beta serine/threoni 99.2 1.8E-11 6E-16 126.9 7.6 91 624-715 5-96 (337)
198 1opk_A P150, C-ABL, proto-onco 99.2 1.4E-11 4.6E-16 135.0 6.8 89 622-715 218-307 (495)
199 1tki_A Titin; serine kinase, m 99.2 3.7E-11 1.3E-15 123.9 9.7 89 623-716 4-93 (321)
200 1fmk_A C-SRC, P60-SRC, tyrosin 99.2 2.3E-11 8E-16 131.7 8.4 89 622-716 182-270 (452)
201 3kmu_A ILK, integrin-linked ki 99.2 1.4E-11 4.7E-16 123.8 6.1 89 624-715 10-100 (271)
202 1fot_A TPK1 delta, CAMP-depend 99.2 1.9E-11 6.5E-16 125.7 7.3 91 624-715 6-97 (318)
203 2i1m_A Macrophage colony-stimu 99.2 2.4E-11 8.1E-16 126.1 7.8 94 619-715 41-141 (333)
204 3dtc_A Mitogen-activated prote 99.2 2E-11 6.8E-16 122.6 6.9 91 624-715 7-97 (271)
205 3a8x_A Protein kinase C IOTA t 99.2 4.3E-11 1.5E-15 124.6 9.6 91 624-715 9-101 (345)
206 1luf_A Muscle-specific tyrosin 99.2 3.2E-11 1.1E-15 125.7 8.7 93 620-715 43-141 (343)
207 3tki_A Serine/threonine-protei 99.2 2E-11 6.9E-16 126.0 7.0 89 624-715 7-96 (323)
208 3vhe_A Vascular endothelial gr 99.2 1.2E-11 3.9E-16 130.0 5.2 97 616-715 14-118 (359)
209 3c0i_A Peripheral plasma membr 99.2 2.3E-11 7.9E-16 127.1 7.3 92 624-715 24-117 (351)
210 3l9p_A Anaplastic lymphoma kin 99.2 2.8E-11 9.5E-16 127.3 7.8 89 624-715 71-165 (367)
211 3hko_A Calcium/calmodulin-depe 99.2 2.6E-11 8.9E-16 126.5 7.4 96 620-715 22-119 (345)
212 2x4f_A Myosin light chain kina 99.2 4E-11 1.4E-15 126.3 8.6 86 626-715 91-177 (373)
213 1k9a_A Carboxyl-terminal SRC k 99.2 3.3E-11 1.1E-15 130.4 8.1 87 622-715 191-278 (450)
214 3is5_A Calcium-dependent prote 99.2 5.6E-11 1.9E-15 120.3 9.3 89 624-715 22-111 (285)
215 4fr4_A YANK1, serine/threonine 99.2 2.3E-11 7.8E-16 128.1 6.5 91 624-715 15-106 (384)
216 2h8h_A Proto-oncogene tyrosine 99.2 3.1E-11 1.1E-15 133.4 7.8 90 621-716 264-353 (535)
217 1rdq_E PKA C-alpha, CAMP-depen 99.2 3.1E-11 1.1E-15 125.8 7.3 91 624-715 41-132 (350)
218 2w4o_A Calcium/calmodulin-depe 99.2 3.9E-11 1.3E-15 125.3 8.0 87 623-715 52-139 (349)
219 3soa_A Calcium/calmodulin-depe 99.2 3.4E-11 1.2E-15 129.5 7.8 91 623-715 10-101 (444)
220 3uc3_A Serine/threonine-protei 99.2 6.1E-11 2.1E-15 124.4 9.5 88 623-715 19-107 (361)
221 2wqm_A Serine/threonine-protei 99.1 9.3E-11 3.2E-15 120.3 10.6 92 623-715 31-123 (310)
222 3t9t_A Tyrosine-protein kinase 99.1 4.9E-11 1.7E-15 119.4 8.2 87 624-715 8-94 (267)
223 3gni_B Strad alpha; kinase fol 99.1 5.8E-11 2E-15 126.1 9.2 90 624-715 25-117 (389)
224 1kob_A Twitchin; kinase, intra 99.1 7.8E-11 2.7E-15 124.4 9.9 88 624-715 51-139 (387)
225 4euu_A Serine/threonine-protei 99.1 6.6E-11 2.3E-15 121.9 9.1 89 624-715 9-100 (319)
226 1x8b_A WEE1HU, WEE1-like prote 99.1 7.1E-11 2.4E-15 119.6 9.2 90 624-715 11-102 (289)
227 3soc_A Activin receptor type-2 99.1 4.3E-11 1.5E-15 123.5 7.7 87 623-715 23-113 (322)
228 2y94_A 5'-AMP-activated protei 99.1 3.1E-11 1.1E-15 130.7 6.8 92 624-716 16-108 (476)
229 3txo_A PKC-L, NPKC-ETA, protei 99.1 3.8E-11 1.3E-15 125.3 7.1 92 623-715 22-115 (353)
230 2ivs_A Proto-oncogene tyrosine 99.1 5.4E-11 1.8E-15 122.3 8.1 90 623-715 22-117 (314)
231 3ork_A Serine/threonine protei 99.1 3E-11 1E-15 124.0 5.9 91 624-715 12-107 (311)
232 4dc2_A Protein kinase C IOTA t 99.1 4.3E-11 1.5E-15 126.5 7.1 92 623-715 51-144 (396)
233 1xjd_A Protein kinase C, theta 99.1 3.5E-11 1.2E-15 125.1 6.3 93 622-715 15-109 (345)
234 3ugc_A Tyrosine-protein kinase 99.1 5.2E-11 1.8E-15 121.2 7.4 88 624-715 10-104 (295)
235 1p4o_A Insulin-like growth fac 99.1 2.8E-11 9.7E-16 124.9 5.4 95 618-715 19-119 (322)
236 3kfa_A Tyrosine-protein kinase 99.1 2.7E-11 9.1E-16 122.9 5.1 90 621-715 10-100 (288)
237 2acx_A G protein-coupled recep 99.1 4.5E-11 1.5E-15 131.4 7.2 92 623-715 183-275 (576)
238 2pvf_A Fibroblast growth facto 99.1 6.8E-11 2.3E-15 122.7 8.1 90 623-715 34-132 (334)
239 2a2a_A Death-associated protei 99.1 9.9E-11 3.4E-15 120.7 9.2 92 624-715 12-106 (321)
240 3niz_A Rhodanese family protei 99.1 6.5E-11 2.2E-15 121.5 7.7 90 623-715 20-109 (311)
241 3bhy_A Death-associated protei 99.1 1E-10 3.5E-15 118.2 9.1 92 624-715 5-99 (283)
242 4eut_A Serine/threonine-protei 99.1 7.7E-11 2.6E-15 125.4 8.5 90 624-716 9-101 (396)
243 2rku_A Serine/threonine-protei 99.1 1.1E-10 3.7E-15 118.8 9.4 91 624-715 15-106 (294)
244 3gxj_A TGF-beta receptor type- 99.1 9.4E-11 3.2E-15 119.8 8.9 84 624-715 3-92 (303)
245 1qpc_A LCK kinase; alpha beta 99.1 4.7E-11 1.6E-15 120.4 6.5 88 623-716 12-99 (279)
246 2h6d_A 5'-AMP-activated protei 99.1 7.3E-11 2.5E-15 118.8 7.7 91 624-715 11-102 (276)
247 1t46_A HOMO sapiens V-KIT hard 99.1 5.6E-11 1.9E-15 122.1 6.9 90 623-715 22-118 (313)
248 3fdn_A Serine/threonine-protei 99.1 5.3E-11 1.8E-15 120.1 6.6 92 623-715 8-100 (279)
249 3kk8_A Calcium/calmodulin depe 99.1 1.2E-10 4.2E-15 117.7 9.3 91 623-715 5-96 (284)
250 3kn6_A Ribosomal protein S6 ki 99.1 1.4E-10 4.7E-15 119.8 9.8 80 629-715 16-97 (325)
251 3tt0_A Basic fibroblast growth 99.1 7.2E-11 2.5E-15 124.9 7.8 90 623-715 68-166 (382)
252 2owb_A Serine/threonine-protei 99.1 1.2E-10 4.2E-15 120.8 9.4 92 623-715 40-132 (335)
253 3h4j_B AMPK kdaid, SNF1-like p 99.1 4E-11 1.4E-15 124.1 5.6 90 624-715 9-99 (336)
254 3nyv_A Calmodulin-domain prote 99.1 1E-10 3.4E-15 128.1 9.0 91 624-715 26-117 (484)
255 3eqc_A Dual specificity mitoge 99.1 1.2E-10 4.1E-15 122.3 9.2 89 624-715 33-122 (360)
256 3q5i_A Protein kinase; CDPK, m 99.1 1.3E-10 4.6E-15 127.7 9.9 93 623-715 35-137 (504)
257 2h34_A Serine/threonine-protei 99.1 1.2E-10 4E-15 119.4 8.8 92 623-715 33-125 (309)
258 3cok_A Serine/threonine-protei 99.1 6.2E-11 2.1E-15 119.5 6.6 92 623-715 10-102 (278)
259 4fvq_A Tyrosine-protein kinase 99.1 8.2E-11 2.8E-15 119.3 7.5 88 624-715 8-103 (289)
260 3lxp_A Non-receptor tyrosine-p 99.1 1.7E-10 5.9E-15 118.7 9.9 88 625-715 32-126 (318)
261 3f3z_A Calcium/calmodulin-depe 99.1 1.3E-10 4.4E-15 117.1 8.7 88 624-715 9-97 (277)
262 3lij_A Calcium/calmodulin depe 99.1 9.8E-11 3.4E-15 128.4 8.5 90 624-715 37-127 (494)
263 2pmi_A Negative RE, cyclin-dep 99.1 1.1E-10 3.8E-15 120.1 8.3 89 623-715 4-93 (317)
264 2yfx_A Tyrosine-protein kinase 99.1 1.1E-10 3.6E-15 120.9 8.1 90 623-715 29-124 (327)
265 4h09_A Hypothetical leucine ri 99.1 1.5E-08 5.2E-13 106.9 25.0 82 72-158 42-123 (379)
266 4e5w_A Tyrosine-protein kinase 99.1 1.5E-10 5.1E-15 118.3 9.1 89 624-715 21-116 (302)
267 1u5q_A Serine/threonine protei 99.1 1.3E-10 4.5E-15 121.0 8.8 90 624-715 54-144 (348)
268 2eva_A TAK1 kinase - TAB1 chim 99.1 7.8E-11 2.7E-15 120.7 6.8 83 624-715 8-90 (307)
269 3c4z_A Rhodopsin kinase; Ser/T 99.1 8.1E-11 2.8E-15 129.0 7.3 91 624-715 185-276 (543)
270 2r5t_A Serine/threonine-protei 99.1 7.1E-11 2.4E-15 124.1 6.5 91 624-715 38-130 (373)
271 1rjb_A FL cytokine receptor; k 99.1 8.1E-11 2.8E-15 122.7 6.9 92 621-715 42-140 (344)
272 2w5a_A Serine/threonine-protei 99.1 1.6E-10 5.5E-15 116.5 8.9 91 623-715 5-98 (279)
273 2ac3_A MAP kinase-interacting 99.1 2.6E-10 9E-15 117.2 10.6 87 625-715 13-102 (316)
274 1ob3_A PFPK5, cell division co 99.1 1E-10 3.5E-15 118.6 7.3 89 624-715 2-90 (288)
275 2zv2_A Calcium/calmodulin-depe 99.1 9.8E-11 3.3E-15 119.4 7.1 93 623-715 12-129 (298)
276 3qup_A Tyrosine-protein kinase 99.1 1.5E-10 5.2E-15 119.4 8.6 92 622-715 21-122 (323)
277 4agu_A Cyclin-dependent kinase 99.1 1.7E-10 6E-15 118.3 8.8 90 624-715 3-93 (311)
278 3i6u_A CDS1, serine/threonine- 99.1 1.2E-10 4.2E-15 124.6 8.0 92 623-715 134-230 (419)
279 2yex_A Serine/threonine-protei 99.1 1.4E-10 4.8E-15 116.7 7.9 89 624-715 7-96 (276)
280 2i0e_A Protein kinase C-beta I 99.1 8.1E-11 2.8E-15 122.7 6.3 92 623-715 19-112 (353)
281 3e7e_A HBUB1, BUB1A, mitotic c 99.1 1.3E-10 4.3E-15 122.3 7.8 87 622-715 63-158 (365)
282 2qr7_A Ribosomal protein S6 ki 99.1 5.9E-11 2E-15 123.3 5.2 85 623-715 21-107 (342)
283 3q4u_A Activin receptor type-1 99.1 2.1E-10 7.3E-15 117.0 9.3 86 623-716 7-98 (301)
284 3a7i_A MST3 kinase, serine/thr 99.1 2.4E-10 8.4E-15 116.7 9.7 89 624-715 22-111 (303)
285 2vgo_A Serine/threonine-protei 99.1 9.3E-11 3.2E-15 118.6 6.5 91 624-715 14-105 (284)
286 4ejn_A RAC-alpha serine/threon 99.1 4.9E-11 1.7E-15 129.1 4.6 92 623-715 147-239 (446)
287 3mwu_A Calmodulin-domain prote 99.1 1.1E-10 3.9E-15 127.7 7.6 90 624-715 22-112 (486)
288 2jam_A Calcium/calmodulin-depe 99.1 1.9E-10 6.6E-15 117.6 8.8 88 624-715 9-97 (304)
289 2y7j_A Phosphorylase B kinase 99.1 3.4E-10 1.2E-14 118.9 10.7 98 618-715 88-191 (365)
290 2clq_A Mitogen-activated prote 99.1 2.4E-10 8.2E-15 116.2 9.3 87 625-715 23-110 (295)
291 1vzo_A Ribosomal protein S6 ki 99.1 5E-11 1.7E-15 124.8 4.3 92 624-715 54-150 (355)
292 4h09_A Hypothetical leucine ri 99.1 3E-08 1E-12 104.6 25.8 310 52-405 47-356 (379)
293 2ozo_A Tyrosine-protein kinase 99.1 1.8E-10 6.3E-15 129.2 8.7 82 631-716 343-427 (613)
294 4f0f_A Serine/threonine-protei 99.1 2.7E-10 9.1E-15 115.4 9.1 90 624-715 19-112 (287)
295 2eue_A Carbon catabolite derep 99.1 2.3E-10 7.8E-15 115.1 8.5 90 624-715 13-103 (275)
296 1t4h_A Serine/threonine-protei 99.1 2.9E-10 9.8E-15 115.4 9.3 89 625-715 27-120 (290)
297 3lxl_A Tyrosine-protein kinase 99.1 2.8E-10 9.6E-15 117.7 9.3 88 624-715 23-117 (327)
298 1mqb_A Ephrin type-A receptor 99.1 1.8E-10 6E-15 119.5 7.7 89 624-715 44-137 (333)
299 2buj_A Serine/threonine-protei 99.1 2.5E-10 8.6E-15 117.5 8.8 89 623-715 28-121 (317)
300 2wei_A Calmodulin-domain prote 99.1 2.7E-10 9.2E-15 115.4 8.8 91 623-715 21-112 (287)
301 1u59_A Tyrosine-protein kinase 99.1 3.1E-10 1E-14 115.0 9.2 87 625-715 10-100 (287)
302 3o0g_A Cell division protein k 99.0 3E-10 1E-14 115.4 9.1 87 624-713 2-89 (292)
303 2pml_X PFPK7, Ser/Thr protein 99.0 7.4E-11 2.5E-15 123.2 4.6 91 623-714 30-133 (348)
304 1mp8_A Focal adhesion kinase 1 99.0 2.7E-10 9.2E-15 115.0 8.5 89 623-715 14-106 (281)
305 2xir_A Vascular endothelial gr 99.0 1.6E-10 5.6E-15 118.7 6.7 96 617-715 20-123 (316)
306 3gbz_A Kinase, CMGC CDK; ssgci 99.0 2.2E-10 7.5E-15 118.6 7.2 91 622-715 32-123 (329)
307 2j7t_A Serine/threonine-protei 99.0 3E-10 1E-14 116.0 8.1 89 623-715 18-107 (302)
308 1zy4_A Serine/threonine-protei 99.0 3.5E-10 1.2E-14 115.4 8.6 87 624-715 6-106 (303)
309 2w1i_A JAK2; chromosomal rearr 99.0 3.9E-10 1.3E-14 116.5 8.9 88 624-715 41-135 (326)
310 2vwi_A Serine/threonine-protei 99.0 1.1E-10 3.7E-15 119.3 4.6 91 622-715 13-104 (303)
311 3c1x_A Hepatocyte growth facto 99.0 1.9E-10 6.5E-15 121.0 6.5 88 625-715 90-182 (373)
312 2a19_B Interferon-induced, dou 99.0 1.9E-10 6.4E-15 116.3 6.2 84 624-715 11-111 (284)
313 3com_A Serine/threonine-protei 99.0 3.7E-10 1.3E-14 116.0 8.4 87 623-715 28-115 (314)
314 1fvr_A Tyrosine-protein kinase 99.0 3.4E-10 1.2E-14 117.0 8.2 89 624-715 25-117 (327)
315 4aaa_A Cyclin-dependent kinase 99.0 3.3E-10 1.1E-14 117.3 8.1 90 624-715 25-115 (331)
316 1phk_A Phosphorylase kinase; g 99.0 5.4E-10 1.9E-14 113.8 9.5 93 623-715 16-115 (298)
317 3p1a_A MYT1 kinase, membrane-a 99.0 1.8E-10 6.2E-15 118.1 5.8 89 624-715 57-147 (311)
318 1byg_A CSK, protein (C-termina 99.0 2.7E-10 9.1E-15 114.8 6.9 86 623-715 20-106 (278)
319 2ycf_A Serine/threonine-protei 99.0 2.1E-10 7.2E-15 118.3 6.3 91 624-715 10-105 (322)
320 4fl3_A Tyrosine-protein kinase 99.0 3.5E-10 1.2E-14 127.2 8.3 83 630-715 375-460 (635)
321 1xbb_A Tyrosine-protein kinase 99.0 2.5E-10 8.5E-15 115.9 6.4 89 624-715 16-108 (291)
322 3brb_A Proto-oncogene tyrosine 99.0 2.1E-10 7.2E-15 117.8 5.8 93 621-715 31-132 (313)
323 3lb7_A RAF proto-oncogene seri 99.0 5.3E-10 1.8E-14 114.4 8.7 88 623-715 35-122 (307)
324 3f66_A Hepatocyte growth facto 99.0 4.3E-10 1.5E-14 114.6 8.0 89 624-715 25-118 (298)
325 1b6c_B TGF-B superfamily recep 99.0 6.8E-10 2.3E-14 115.5 9.4 87 621-715 39-131 (342)
326 3mdy_A Bone morphogenetic prot 99.0 6.9E-10 2.4E-14 115.2 9.4 86 622-715 35-126 (337)
327 3og7_A AKAP9-BRAF fusion prote 99.0 5.1E-10 1.7E-14 113.5 7.9 88 623-715 23-110 (289)
328 2r3i_A Cell division protein k 99.0 5.4E-10 1.9E-14 113.9 7.9 89 624-715 3-92 (299)
329 3dbq_A Dual specificity protei 99.0 6.5E-10 2.2E-14 115.7 8.7 89 624-715 9-99 (343)
330 3pls_A Macrophage-stimulating 99.0 7.8E-10 2.7E-14 112.6 9.1 88 625-715 22-114 (298)
331 2x7f_A TRAF2 and NCK-interacti 99.0 2.6E-10 8.9E-15 117.9 5.4 92 619-715 19-118 (326)
332 3nsz_A CK II alpha, casein kin 99.0 7.7E-10 2.6E-14 114.5 9.0 85 624-715 36-124 (330)
333 3pg1_A Mitogen-activated prote 99.0 5.6E-10 1.9E-14 117.2 7.7 100 615-715 13-124 (362)
334 2izr_A Casein kinase I isoform 99.0 6.9E-10 2.3E-14 114.9 8.1 85 624-715 9-95 (330)
335 2zmd_A Dual specificity protei 99.0 7.5E-10 2.6E-14 117.3 8.3 89 624-715 56-146 (390)
336 3cc6_A Protein tyrosine kinase 99.0 8.2E-10 2.8E-14 111.4 8.1 89 623-715 11-103 (281)
337 3dls_A PAS domain-containing s 99.0 2.7E-10 9.2E-15 118.1 4.6 93 623-715 23-121 (335)
338 2wtk_C Serine/threonine-protei 99.0 4.7E-10 1.6E-14 114.7 6.3 92 623-715 4-98 (305)
339 3poz_A Epidermal growth factor 99.0 6.6E-10 2.3E-14 114.8 7.4 88 624-715 15-107 (327)
340 3lm5_A Serine/threonine-protei 99.0 5.7E-10 1.9E-14 115.3 6.8 90 624-715 28-120 (327)
341 2vuw_A Serine/threonine-protei 99.0 5.4E-11 1.8E-15 123.6 -1.0 91 624-715 20-153 (336)
342 3llt_A Serine/threonine kinase 99.0 7.1E-10 2.4E-14 116.3 7.5 95 615-715 26-126 (360)
343 3byv_A Rhoptry kinase; malaria 98.9 2.9E-10 9.9E-15 120.1 4.4 91 623-715 72-190 (377)
344 3eb0_A Putative uncharacterize 98.9 4E-10 1.4E-14 119.2 5.5 86 621-715 4-128 (383)
345 1u46_A ACK-1, activated CDC42 98.9 6.1E-10 2.1E-14 113.0 6.6 90 624-715 18-111 (291)
346 3mtl_A Cell division protein k 98.9 2.7E-10 9.1E-15 117.7 3.8 88 624-715 2-90 (324)
347 1cm8_A Phosphorylated MAP kina 98.9 7.5E-10 2.5E-14 116.3 7.2 90 623-715 24-120 (367)
348 2pzi_A Probable serine/threoni 98.9 4.6E-10 1.6E-14 128.0 5.7 89 624-715 80-175 (681)
349 2ra8_A Uncharacterized protein 98.9 1.3E-09 4.4E-14 113.2 8.1 83 404-488 251-341 (362)
350 2i6l_A Mitogen-activated prote 98.9 1.3E-09 4.4E-14 112.1 7.9 87 624-715 11-112 (320)
351 1nxk_A MAP kinase-activated pr 98.9 1.2E-09 4.2E-14 116.0 7.9 82 625-715 62-150 (400)
352 3n9x_A Phosphotransferase; mal 98.9 9.9E-10 3.4E-14 118.1 7.0 90 623-715 25-120 (432)
353 3an0_A Dual specificity mitoge 98.9 1.8E-09 6.1E-14 112.3 8.7 89 623-715 50-140 (340)
354 2j0j_A Focal adhesion kinase 1 98.9 1.6E-09 5.6E-14 122.3 8.9 89 623-715 389-481 (656)
355 3m2w_A MAP kinase-activated pr 98.9 2E-09 6.7E-14 109.7 8.7 83 624-715 17-106 (299)
356 3kex_A Receptor tyrosine-prote 98.9 7.4E-10 2.5E-14 114.4 5.6 88 624-715 13-105 (325)
357 3oz6_A Mitogen-activated prote 98.9 1.5E-09 5.2E-14 115.0 8.1 90 623-715 8-101 (388)
358 3rp9_A Mitogen-activated prote 98.9 9.6E-10 3.3E-14 119.3 6.6 89 624-715 53-147 (458)
359 1ua2_A CAK, cell division prot 98.9 1.1E-09 3.7E-14 114.2 6.6 92 623-715 9-102 (346)
360 2y4i_B KSR2, HKSR2, kinase sup 98.9 3.8E-10 1.3E-14 116.2 3.1 92 621-716 30-121 (319)
361 3pfq_A PKC-B, PKC-beta, protei 98.9 6.8E-10 2.3E-14 125.9 5.4 92 623-715 340-433 (674)
362 3ttj_A Mitogen-activated prote 98.9 1.3E-09 4.3E-14 118.2 7.2 89 623-714 61-156 (464)
363 3fme_A Dual specificity mitoge 98.9 1.7E-09 6E-14 109.5 7.8 90 623-715 6-96 (290)
364 2rio_A Serine/threonine-protei 98.9 1.6E-09 5.5E-14 116.5 7.5 83 625-715 16-99 (434)
365 3mi9_A Cell division protein k 98.9 2.1E-09 7.2E-14 112.3 8.2 89 624-715 17-114 (351)
366 2xrw_A Mitogen-activated prote 98.9 2E-09 6.8E-14 113.3 8.0 90 623-715 24-120 (371)
367 2ra8_A Uncharacterized protein 98.9 1.4E-09 4.9E-14 112.8 6.6 155 353-512 168-341 (362)
368 3g2f_A Bone morphogenetic prot 98.9 3.7E-09 1.3E-13 109.7 9.3 85 623-715 12-103 (336)
369 3lzb_A Epidermal growth factor 98.9 3.3E-09 1.1E-13 109.5 8.7 88 624-715 15-107 (327)
370 2b9h_A MAP kinase FUS3, mitoge 98.9 2.4E-09 8.3E-14 111.9 7.8 89 623-715 10-104 (353)
371 4exu_A Mitogen-activated prote 98.9 2.5E-09 8.6E-14 112.5 7.9 90 623-715 41-137 (371)
372 3qa8_A MGC80376 protein; kinas 98.9 5.5E-10 1.9E-14 124.2 2.7 89 624-715 14-109 (676)
373 3cek_A Dual specificity protei 98.8 3.1E-09 1.1E-13 109.0 7.8 91 622-715 26-118 (313)
374 3qyz_A Mitogen-activated prote 98.8 3.5E-09 1.2E-13 111.1 8.4 89 623-715 26-120 (364)
375 3aln_A Dual specificity mitoge 98.8 5E-09 1.7E-13 108.2 9.4 88 624-715 22-111 (327)
376 2fst_X Mitogen-activated prote 98.8 1.8E-09 6.2E-14 113.3 6.1 90 623-715 28-124 (367)
377 3coi_A Mitogen-activated prote 98.8 2.9E-09 9.8E-14 111.3 7.4 89 624-715 24-119 (353)
378 3en9_A Glycoprotease, O-sialog 98.8 2.9E-09 1E-13 117.3 7.7 89 627-716 339-431 (540)
379 3rgf_A Cyclin-dependent kinase 98.8 3.6E-09 1.2E-13 112.8 8.1 83 626-715 22-110 (405)
380 1csn_A Casein kinase-1; phosph 98.8 6.2E-09 2.1E-13 105.8 9.1 85 624-715 10-96 (298)
381 3rw6_A Nuclear RNA export fact 98.8 2.1E-10 7.3E-15 112.8 -1.9 21 38-58 76-97 (267)
382 1blx_A Cyclin-dependent kinase 98.8 2.3E-09 7.8E-14 110.7 5.3 91 622-715 9-109 (326)
383 3p23_A Serine/threonine-protei 98.8 1.7E-09 5.8E-14 116.0 4.4 85 623-715 23-108 (432)
384 3fhr_A MAP kinase-activated pr 98.8 5.7E-09 2E-13 108.2 7.9 84 623-715 27-117 (336)
385 3ll6_A Cyclin G-associated kin 98.8 4.6E-09 1.6E-13 108.9 6.8 87 624-715 28-124 (337)
386 3g33_A Cell division protein k 98.8 4.9E-09 1.7E-13 107.2 6.9 92 623-715 8-109 (308)
387 2jii_A Serine/threonine-protei 98.8 1.9E-09 6.4E-14 112.7 3.7 82 624-715 42-148 (352)
388 2iwi_A Serine/threonine-protei 98.8 1.7E-09 5.8E-14 110.9 3.1 95 621-715 28-130 (312)
389 2v62_A Serine/threonine-protei 98.8 2.8E-09 9.5E-14 111.0 4.7 91 624-715 37-142 (345)
390 3q60_A ROP5B; pseudokinase, tr 98.8 8.6E-09 2.9E-13 108.5 7.7 90 623-715 61-178 (371)
391 3e3p_A Protein kinase, putativ 98.7 1.3E-08 4.4E-13 106.6 8.1 87 618-709 17-111 (360)
392 1j1b_A Glycogen synthase kinas 98.7 4.5E-09 1.5E-13 112.5 4.5 82 624-714 54-142 (420)
393 2dyl_A Dual specificity mitoge 98.7 1.8E-08 6.1E-13 103.5 8.1 87 623-712 24-111 (318)
394 3kvw_A DYRK2, dual specificity 98.7 2.4E-08 8.1E-13 107.1 9.3 86 624-715 97-189 (429)
395 4e7w_A Glycogen synthase kinas 98.7 4.9E-09 1.7E-13 111.2 3.6 80 624-711 40-125 (394)
396 1z57_A Dual specificity protei 98.7 1.3E-08 4.6E-13 105.4 6.6 86 624-715 14-107 (339)
397 3op5_A Serine/threonine-protei 98.7 9.2E-09 3.2E-13 107.9 5.4 92 623-715 34-142 (364)
398 1zar_A RIO2 kinase; serine kin 98.7 2.4E-08 8.1E-13 100.3 7.9 93 617-713 83-189 (282)
399 1wak_A Serine/threonine-protei 98.7 1.5E-08 5.2E-13 107.6 6.7 86 624-715 37-135 (397)
400 3uzp_A CKI-delta, CKID, casein 98.7 1.8E-08 6.2E-13 102.3 6.9 86 623-715 8-95 (296)
401 3a99_A Proto-oncogene serine/t 98.7 8.4E-09 2.9E-13 106.1 4.2 94 622-715 41-140 (320)
402 4hgt_A Casein kinase I isoform 98.6 4E-08 1.4E-12 99.6 8.2 86 623-715 8-95 (296)
403 1q8y_A SR protein kinase; tran 98.6 2.9E-08 9.8E-13 104.5 6.5 86 624-715 19-120 (373)
404 3sv0_A Casein kinase I-like; t 98.6 8.1E-08 2.8E-12 104.1 9.8 85 624-715 7-93 (483)
405 2vx3_A Dual specificity tyrosi 98.5 7.6E-08 2.6E-12 101.6 7.4 87 623-715 53-146 (382)
406 4azs_A Methyltransferase WBDD; 98.5 8.9E-08 3E-12 106.1 6.2 85 631-715 241-333 (569)
407 2eu9_A Dual specificity protei 98.5 1.1E-07 3.8E-12 99.1 6.6 86 624-715 19-112 (355)
408 1io0_A Tropomodulin; LRR prote 98.4 3E-08 1E-12 92.7 0.5 115 71-185 31-164 (185)
409 1io0_A Tropomodulin; LRR prote 98.4 1E-07 3.5E-12 89.1 3.2 18 353-370 32-50 (185)
410 3rw6_A Nuclear RNA export fact 98.3 1.1E-07 3.7E-12 93.4 1.8 39 404-442 169-209 (267)
411 1zth_A RIO1 serine protein kin 98.0 2.9E-06 1E-10 83.9 5.2 87 626-714 49-163 (258)
412 4gyi_A RIO2 kinase; protein ki 97.9 1.6E-06 5.5E-11 89.6 0.7 89 624-714 95-201 (397)
413 3e4g_A ATP synthase subunit S, 97.8 4.2E-06 1.5E-10 76.0 1.9 34 77-110 62-95 (176)
414 3dzo_A Rhoptry kinase domain; 97.8 1.1E-05 3.7E-10 85.9 5.3 61 622-683 76-137 (413)
415 3e4g_A ATP synthase subunit S, 97.8 1.3E-05 4.6E-10 72.7 3.8 82 406-487 62-149 (176)
416 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00038 1.3E-08 64.4 4.4 10 357-366 41-50 (197)
417 3tm0_A Aminoglycoside 3'-phosp 97.1 0.0013 4.5E-08 64.7 8.6 88 622-714 12-100 (263)
418 3rfe_A Platelet glycoprotein I 97.1 0.00096 3.3E-08 57.6 6.6 58 457-516 12-70 (130)
419 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00054 1.9E-08 63.4 4.7 61 452-512 97-168 (197)
420 3d1u_A Putative fructosamine-3 96.8 0.0017 5.9E-08 64.8 6.9 77 627-711 18-97 (288)
421 1nd4_A Aminoglycoside 3'-phosp 96.7 0.00099 3.4E-08 65.5 4.4 82 624-712 20-103 (264)
422 3rfe_A Platelet glycoprotein I 96.5 0.0052 1.8E-07 52.9 6.7 36 77-112 32-67 (130)
423 3dxp_A Putative acyl-COA dehyd 94.2 0.037 1.3E-06 57.0 5.1 80 629-712 43-129 (359)
424 3jr1_A Putative fructosamine-3 92.4 0.28 9.4E-06 49.2 7.9 76 628-711 40-118 (312)
425 3f7w_A Putative fructosamine-3 92.3 0.24 8.3E-06 49.0 7.3 78 626-711 17-97 (288)
426 4gkh_A Aminoglycoside 3'-phosp 90.1 0.89 3E-05 44.2 8.9 82 624-713 25-109 (272)
427 2olc_A MTR kinase, methylthior 90.1 0.32 1.1E-05 50.7 5.8 79 629-709 35-120 (397)
428 3cxl_A N-chimerin; SH2, RHO-GA 89.9 0.049 1.7E-06 58.1 -0.7 62 629-695 147-215 (463)
429 3r70_A Aminoglycoside phosphot 87.3 0.7 2.4E-05 46.4 6.0 74 625-712 38-115 (320)
430 3ovc_A Hygromycin-B 4-O-kinase 85.4 1.6 5.6E-05 44.6 7.6 75 628-712 45-122 (362)
431 3tdw_A Gentamicin resistance p 79.3 2 6.7E-05 42.7 5.3 74 630-713 25-102 (306)
432 2q83_A YTAA protein; 2635576, 76.0 3.1 0.0001 41.8 5.7 72 631-711 39-118 (346)
433 3ats_A Putative uncharacterize 75.3 0.87 3E-05 46.5 1.3 82 630-712 26-121 (357)
434 3sg8_A APH(2'')-ID; antibiotic 66.6 2.3 7.8E-05 42.2 2.1 74 630-713 26-105 (304)
435 2ks1_B Epidermal growth factor 60.5 8.6 0.0003 25.3 3.2 6 565-570 14-19 (44)
436 1zyl_A Hypothetical protein YI 57.2 22 0.00074 35.2 7.5 74 631-710 33-113 (328)
437 2pyw_A Uncharacterized protein 55.5 22 0.00074 36.9 7.4 77 629-708 39-122 (420)
438 2l2t_A Receptor tyrosine-prote 51.2 11 0.00039 24.6 2.6 6 565-570 13-18 (44)
439 2lz0_A Uncharacterized protein 45.4 46 0.0016 26.3 6.1 44 88-132 8-51 (100)
440 2lz0_A Uncharacterized protein 45.3 41 0.0014 26.6 5.8 44 66-110 10-53 (100)
441 2ppq_A HSK, HK, homoserine kin 39.4 34 0.0012 33.6 5.6 75 630-711 28-110 (322)
442 1nw1_A Choline kinase (49.2 KD 33.9 33 0.0011 35.6 4.5 72 630-711 79-159 (429)
443 3csv_A Aminoglycoside phosphot 32.8 30 0.001 34.3 3.9 74 632-714 26-102 (333)
444 3i1a_A Spectinomycin phosphotr 26.2 1.1E+02 0.0037 30.3 6.7 68 633-711 32-108 (339)
445 3dxq_A Choline/ethanolamine ki 24.5 81 0.0028 30.5 5.3 70 629-710 23-94 (301)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-71 Score=643.81 Aligned_cols=534 Identities=32% Similarity=0.518 Sum_probs=429.3
Q ss_pred hHHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCCcceeeeeeCCCCCEEEEEcCCCCCccc---cCC---------
Q 041300 2 NEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGT---LRD--------- 69 (716)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~---~~~--------- 69 (716)
++|++||++||+++ .||. .+.+|..++ +||.|.||+|+ .|+|+.|+|+++++.|. +++
T Consensus 11 ~~~~~all~~k~~~-~~~~-~l~~W~~~~-------~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 11 YREIHQLISFKDVL-PDKN-LLPDWSSNK-------NPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp HHHHHHHHHHHTTC-SCTT-SSTTCCTTS-------CGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred HHHHHHHHHHHhhC-CCcc-cccCCCCCC-------CCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 57999999999999 5776 889996555 89999999998 79999999999999886 322
Q ss_pred -------------CCCCCCCCCcEEECCCCCccccCcc--cccCCCCCCEEECcCCcCcccCCccc-cCC----------
Q 041300 70 -------------FSFSSFPQLVHLDLSLNGFFGTIPS--QIGNLTKLSYISLDSNQLSGKIPAEV-GLL---------- 123 (716)
Q Consensus 70 -------------~~f~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l---------- 123 (716)
..|..+++|++|||++|.+.+.+|. .++++++|++|+|++|.+.+.+|..+ ..+
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 4688889999999999999888877 78888888888888777765555433 233
Q ss_pred ---------------------------------------CCCCEEEcccccCccCCCccccCCCCCceeecccccccCCC
Q 041300 124 ---------------------------------------THLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSL 164 (716)
Q Consensus 124 ---------------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 164 (716)
++|++|+|++|.+.+.+|. +..+++|++|+|++|.+++..
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence 3333444444444433333 555556666666666665555
Q ss_pred CccccCCcCCcEEEeeccccc----------------------ccccccccCC-CCCceeeCCC------CCcc------
Q 041300 165 PPFLGNLSNIVRLYINNNSLS----------------------GSILTNIGNL-KFLFELDLSF------LPLS------ 209 (716)
Q Consensus 165 p~~~~~l~~L~~L~L~~n~l~----------------------~~~~~~l~~l-~~L~~L~l~~------~~~~------ 209 (716)
|..|.++++|++|++++|.++ +.+|..+..+ +.|+.|+++. .|..
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 555555555444444444433 2333333332 5555555543 2333
Q ss_pred -------------------cCCCCccCEEEeeCCcCcccCCCccccc--cccEEEccCCcCccccCccccC--CCCccEE
Q 041300 210 -------------------VGNLTNLKSLGLMDNHLSGSIPPSFGNS--MLTWLTLSGNHFTGYLPHNICR--GGLLEAF 266 (716)
Q Consensus 210 -------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~--~~~L~~L 266 (716)
+.++++|++|++++|.+.+.+|..+... .|++|++++|.+++..|..++. .+.|+.|
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 4445555555555555555555544332 5677777777776666666655 6778899
Q ss_pred EecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCc
Q 041300 267 IVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNIT 346 (716)
Q Consensus 267 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 346 (716)
++++|.+++.+|..+.++++|+.|++++|++++..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|+++
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhh-
Q 041300 347 GGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESL- 425 (716)
Q Consensus 347 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~- 425 (716)
+.+|..+..+++|++|++++|++++.+|.++..+++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..+
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987777543
Q ss_pred ---------------------------------------------------------------------cCcCCCCEEEC
Q 041300 426 ---------------------------------------------------------------------GNLLKLHYLGL 436 (716)
Q Consensus 426 ---------------------------------------------------------------------~~l~~L~~L~L 436 (716)
..+++|+.|+|
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 33567999999
Q ss_pred cCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccccc
Q 041300 437 SNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP 516 (716)
Q Consensus 437 s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~ 516 (716)
++|++++.+|..++.++.|+.|+|++|+++|.+|..++.+++|+.|||++|++++.+|..+..+++|++||+++|+++|.
T Consensus 640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred cCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCcccccCCCCCCCCCCCCCCCc
Q 041300 517 VPNSTAFRNAPVEALEGNKELCGGVKGMQPCK 548 (716)
Q Consensus 517 ~p~~~~~~~~~~~~~~~n~~~c~~~~~~~~~~ 548 (716)
+|...++..++...+.||+.+||.+.. +|.
T Consensus 720 iP~~~~~~~~~~~~~~gN~~Lcg~~l~--~C~ 749 (768)
T 3rgz_A 720 IPEMGQFETFPPAKFLNNPGLCGYPLP--RCD 749 (768)
T ss_dssp CCSSSSGGGSCGGGGCSCTEEESTTSC--CCC
T ss_pred CCCchhhccCCHHHhcCCchhcCCCCc--CCC
Confidence 999999999999999999999997643 775
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.3e-57 Score=525.33 Aligned_cols=460 Identities=33% Similarity=0.489 Sum_probs=412.9
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300 51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130 (716)
Q Consensus 51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 130 (716)
..++.|++++|.+.+.++. |..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+.+|.. .+++|++|+
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~ 275 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275 (768)
T ss_dssp TTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred CcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence 3577788888887765532 788888888888888888888888888888888888888888777765 788888888
Q ss_pred cccccCccCCCccccCC-CCCceeecccccccCCCCccccCCcCCcEEEeeccccccccccc-ccCCCCCceeeCCC---
Q 041300 131 FQFNELDGSIPPEVCQL-SSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTN-IGNLKFLFELDLSF--- 205 (716)
Q Consensus 131 L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~--- 205 (716)
+++|.+++.+|..+..+ ++|++|+|++|.+++..|..|+++++|++|++++|.+++.+|.. +..++.|++|+++.
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 88888888888888775 99999999999999999999999999999999999999888866 99999999999976
Q ss_pred ---CCcccCCCC-ccCEEEeeCCcCcccCCCcccc---ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCC
Q 041300 206 ---LPLSVGNLT-NLKSLGLMDNHLSGSIPPSFGN---SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIP 278 (716)
Q Consensus 206 ---~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (716)
.|..+.+++ +|++|++++|.+.+.+|..+.. ..|++|++++|.+++..|..+..++.|+.|++++|++++.+|
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence 455666776 9999999999999888887754 479999999999999999999999999999999999999999
Q ss_pred cccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCC
Q 041300 279 ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQ 358 (716)
Q Consensus 279 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 358 (716)
..+.++++|+.|++++|.+++..|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|.+++.+++
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCccc-------------------------------------
Q 041300 359 LQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEI------------------------------------- 401 (716)
Q Consensus 359 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------------------------------------- 401 (716)
|++|++++|++++.+|..+..+++|+.|++++|++++.+|..+
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999987777543
Q ss_pred ---------------------------------CCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChh
Q 041300 402 ---------------------------------GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKE 448 (716)
Q Consensus 402 ---------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 448 (716)
..+++|+.|||++|++++.+|..+++++.|+.|+|++|++++.+|..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence 33577999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCc-ccc
Q 041300 449 LEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQ-LQG 515 (716)
Q Consensus 449 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~-l~~ 515 (716)
++.+++|+.|||++|+++|.+|..+..+++|++|++++|+++|.+|.. ..+.++....+.+|+ ++|
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 999999999999999999999999999999999999999999999964 234455556677887 444
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.4e-54 Score=491.19 Aligned_cols=486 Identities=19% Similarity=0.198 Sum_probs=417.3
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300 51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130 (716)
Q Consensus 51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 130 (716)
..++.|++++|.+.+ +.+.+|..+++|++|+|++|.+.++.|.+|.++++|++|+|++|.+++..|..|+.+++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCc-CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 368999999999984 5577899999999999999999999999999999999999999999988899999999999999
Q ss_pred cccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCc--eeeCCCC--
Q 041300 131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLF--ELDLSFL-- 206 (716)
Q Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~~-- 206 (716)
+++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++.|+ .++++..
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999987788899999999999999999986655666699999999999999988888899999998 7777653
Q ss_pred ---CcccCCCCccCEEEeeCCcCc--------------------------ccCCCcc---ccccccEEEccCCcCccccC
Q 041300 207 ---PLSVGNLTNLKSLGLMDNHLS--------------------------GSIPPSF---GNSMLTWLTLSGNHFTGYLP 254 (716)
Q Consensus 207 ---~~~~~~l~~L~~L~l~~n~l~--------------------------~~~~~~~---~~~~L~~L~L~~n~l~~~~~ 254 (716)
+.......+|+.|++++|... ...+..+ ....++.|++++|.+++..+
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 223344567888888776410 0011111 12268999999999998888
Q ss_pred ccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCC-CCCCCC
Q 041300 255 HNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISS-NWGKCP 333 (716)
Q Consensus 255 ~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~ 333 (716)
..|..++.|+.|++++|.++ .+|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+.++. .+..++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 88999999999999999998 6778889999999999999999988888899999999999999998866554 488899
Q ss_pred CCCEEEcccCcCcccC--cccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcc-cCCCCCCCEE
Q 041300 334 KLGTLNVSMNNITGGI--PREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTE-IGSLIELEYL 410 (716)
Q Consensus 334 ~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L 410 (716)
+|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++..+.. +..+++|+.|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 9999999999998765 778899999999999999999888889999999999999999998776554 8889999999
Q ss_pred EccCCcCCccCchhhcCcCCCCEEECcCCcCccc---CChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCC
Q 041300 411 DFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLE---LPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHN 487 (716)
Q Consensus 411 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N 487 (716)
++++|.+.+..|..+..+++|++|++++|++.+. .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 9999999988888899999999999999999763 3356888999999999999999888999999999999999999
Q ss_pred cCcccCCcCCcCCCCCCEEEccCCcccccCCCc-cccCCCCcccccCCCCCCC
Q 041300 488 NLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCG 539 (716)
Q Consensus 488 ~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~ 539 (716)
++++..|..|..++.| .|++++|++++.+|.. ..+.......+.+|++.|.
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 9999999999999999 9999999999877653 4455667777889998884
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-54 Score=493.23 Aligned_cols=476 Identities=20% Similarity=0.211 Sum_probs=412.7
Q ss_pred EEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccc
Q 041300 55 NISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFN 134 (716)
Q Consensus 55 ~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (716)
.++.++.++. .++. .+. +.+++|||++|.+.++.|.+|.++++|++|+|++|.+.+..|.+|+.+++|++|+|++|
T Consensus 16 ~~~c~~~~l~-~iP~-~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 16 TYNCENLGLN-EIPG-TLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp EEECTTSCCS-SCCT-TSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEECCCCCcc-cCcC-CCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 3455555555 3422 232 37999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCC------Cc
Q 041300 135 ELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFL------PL 208 (716)
Q Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~------~~ 208 (716)
.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++.....+..++.|+.|+++.. |.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 999999999999999999999999999888889999999999999999999866566666999999999874 34
Q ss_pred ccCCCCccC--EEEeeCCcCcccCCCccccccccEEEccCCcCcc--------------------------ccCccccCC
Q 041300 209 SVGNLTNLK--SLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTG--------------------------YLPHNICRG 260 (716)
Q Consensus 209 ~~~~l~~L~--~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~--------------------------~~~~~~~~~ 260 (716)
.+..+++|+ .|++++|.+.+..|..+....|+.|++++|.... ..+..+..+
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 577889999 8999999999999998888899999999875110 011112222
Q ss_pred --CCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEE
Q 041300 261 --GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL 338 (716)
Q Consensus 261 --~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 338 (716)
..++.+++++|.+.+..+..|.++++|+.|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 16899999999999999999999999999999999999 566778999999999999999999888899999999999
Q ss_pred EcccCcCcccCcc-cccCCCCCCEEEccCCcccccc--CcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 041300 339 NVSMNNITGGIPR-EIGNMSQLQALDLSLNHIVGEI--PKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSAN 415 (716)
Q Consensus 339 ~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 415 (716)
++++|.+.+.+|. .+..+++|++|++++|.+++.. +..+..+++|+.|++++|++++..|..+..+++|+.|++++|
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 9999999866554 5899999999999999999766 778999999999999999999988999999999999999999
Q ss_pred cCCccCch-hhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccc---cchhccCCCCCCEEECcCCcCcc
Q 041300 416 KFNNSVPE-SLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGE---IPFQICSLKSLEKLNLSHNNLSG 491 (716)
Q Consensus 416 ~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~---~p~~~~~l~~L~~L~ls~N~l~~ 491 (716)
.+.+..+. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|++++
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 99877654 489999999999999999988899999999999999999999873 23568899999999999999999
Q ss_pred cCCcCCcCCCCCCEEEccCCcccccCCCc-cccCCCCcccccCCCC
Q 041300 492 LIPNCFEGMHGLSIIDISDNQLQGPVPNS-TAFRNAPVEALEGNKE 536 (716)
Q Consensus 492 ~~~~~~~~~~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~ 536 (716)
..|..|..+++|+.|++++|++++..|.. ...... ...+.+|..
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence 99999999999999999999999876643 223333 344455543
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-53 Score=492.39 Aligned_cols=489 Identities=23% Similarity=0.246 Sum_probs=360.5
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300 51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130 (716)
Q Consensus 51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 130 (716)
.+++.|++++|++.+ +++..|..+++|++|||++|.+.+..|..|.++++|++|+|++|.+++..+..|+.+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 478999999999885 4466799999999999999999998899999999999999999999976666899999999999
Q ss_pred cccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeeccccccccccccc--CCCCCceeeCCCC--
Q 041300 131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIG--NLKFLFELDLSFL-- 206 (716)
Q Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~~-- 206 (716)
|++|.+.+..|..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+++..+..+. .++.|+.|+++..
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999999988888899999999999999999988888999999999999999998877666544 4577888887653
Q ss_pred ----CcccCC---------------------------CCccCEEEeeCCcCcccCCCccccc---cccEEEccCCcCccc
Q 041300 207 ----PLSVGN---------------------------LTNLKSLGLMDNHLSGSIPPSFGNS---MLTWLTLSGNHFTGY 252 (716)
Q Consensus 207 ----~~~~~~---------------------------l~~L~~L~l~~n~l~~~~~~~~~~~---~L~~L~L~~n~l~~~ 252 (716)
|..+.. .++|+.|++++|.+.+..|..+... +|+.|++++|.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 222222 2456677777777776666666542 377777777777777
Q ss_pred cCccccCCCCccEEEecCCcccccCCcccc---------------------------------cCCCCcEEEccCCcCCC
Q 041300 253 LPHNICRGGLLEAFIVSENHFQGTIPESLR---------------------------------NCTSLIRVRLNGNNLTG 299 (716)
Q Consensus 253 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~---------------------------------~l~~L~~L~l~~n~l~~ 299 (716)
.+..+..++.|+.|++++|.+.+..|..|. .+++|+.|++++|.+++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 777777777777777777777666554444 44555555555566665
Q ss_pred ccchhhCCCCCCCEEEccCC----------------------------ccccccCCCCCCCCCCCEEEcccCcCcccCc-
Q 041300 300 NISEALGLYPNLTFIDLSRN----------------------------NFYGEISSNWGKCPKLGTLNVSMNNITGGIP- 350 (716)
Q Consensus 300 ~~~~~~~~~~~L~~L~Ls~n----------------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 350 (716)
..+..|..+++|++|++++| ++++..+..|..+++|+.|++++|.+++.+|
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 55555555555555554443 3333344445555555555555555544333
Q ss_pred ccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCccc--ccCCcccCCCCCCCEEEccCCcCCccCchhhcCc
Q 041300 351 REIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT--GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNL 428 (716)
Q Consensus 351 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 428 (716)
..+.++++|++|++++|++.+..+..|..+++|+.|++++|.++ +..|..+..+++|+.|++++|.+++..+..|.++
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 34555555555555555555555555555566666666666554 4566777888888888888888887777778888
Q ss_pred CCCCEEECcCCcCcccCC--------hhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCC
Q 041300 429 LKLHYLGLSNNQFVLELP--------KELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGM 500 (716)
Q Consensus 429 ~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~ 500 (716)
++|++|++++|++++..+ ..+.++++|++|++++|+++...+..|.++++|+.|++++|+++++.+..|..+
T Consensus 504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 583 (680)
T 1ziw_A 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583 (680)
T ss_dssp TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence 888888888888875422 236778889999999998886555678889999999999999998888888889
Q ss_pred CCCCEEEccCCcccccCCCcc--ccCCCCcccccCCCCCCCC
Q 041300 501 HGLSIIDISDNQLQGPVPNST--AFRNAPVEALEGNKELCGG 540 (716)
Q Consensus 501 ~~L~~l~ls~N~l~~~~p~~~--~~~~~~~~~~~~n~~~c~~ 540 (716)
++|+.|++++|++++..|... .+.......+.+|++.|..
T Consensus 584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 999999999999988766432 4566777788999999964
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.1e-56 Score=506.33 Aligned_cols=475 Identities=20% Similarity=0.253 Sum_probs=281.8
Q ss_pred hHHHHHHHHHHhhcccCCCC-------CCCCCcCCCCCCCCCCCCcce---eeeeeCCCCCEEEEEcCCCCCccccCCCC
Q 041300 2 NEEADALLKWKASLQSHNQS-------LLPSWTNASTNVSSKISPCAW---YGISCNDAGRVTNISLRNTGLSGTLRDFS 71 (716)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~-------~~~~w~~~~~~~~~~~~~c~w---~gv~c~~~~~v~~l~l~~~~l~~~~~~~~ 71 (716)
..|++||.+++++++.+.-. ...+|... .+||.| .||+|+..|+|+.|+|+++++.|.++ .+
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-------~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp-~~ 100 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-------KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP-DA 100 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-------SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEEC-GG
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-------CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCC-hH
Confidence 36889999999998432211 11245433 389999 99999988999999999999999995 68
Q ss_pred CCCCCCCcEEECCCCCc------cc------cCcccccCCCCCCEEECcCCcCcccCCccccCC----------------
Q 041300 72 FSSFPQLVHLDLSLNGF------FG------TIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLL---------------- 123 (716)
Q Consensus 72 f~~l~~L~~L~Ls~n~i------~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---------------- 123 (716)
|..++.|++|||++|.+ .+ .+|... +..|+ +++++|.+.+.+|..+..+
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~ 177 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred HhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence 99999999999999976 22 122211 23333 4444444444443333210
Q ss_pred ---CCCCEEEcc--cccCccCCCccccCCCCCceeecccccccCC-----------------CCcccc--CCcCCcEEEe
Q 041300 124 ---THLKVLSFQ--FNELDGSIPPEVCQLSSIEELFLYSNHLNGS-----------------LPPFLG--NLSNIVRLYI 179 (716)
Q Consensus 124 ---~~L~~L~L~--~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------~p~~~~--~l~~L~~L~L 179 (716)
..++.+.+. .|.+++ +|..|+++++|++|+|++|.+++. +|+.++ ++++|++|+|
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L 256 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEe
Confidence 011111111 344444 444455555555555555555443 444444 5555555555
Q ss_pred ecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCc-Ccc-cCCCcccc-------ccccEEEccCCcCc
Q 041300 180 NNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNH-LSG-SIPPSFGN-------SMLTWLTLSGNHFT 250 (716)
Q Consensus 180 ~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~-------~~L~~L~L~~n~l~ 250 (716)
++|.+.+.+|..+.+ +++|++|++++|. +++ .+|..++. .+|++|++++|.++
T Consensus 257 ~~n~l~~~~p~~l~~------------------l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 257 YNCPNLTKLPTFLKA------------------LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp ECCTTCSSCCTTTTT------------------CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred cCCcCCccChHHHhc------------------CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 555544433333322 2244444455554 444 44443332 34555555555555
Q ss_pred cccCc--cccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCC-CCEEEccCCccccccCC
Q 041300 251 GYLPH--NICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPN-LTFIDLSRNNFYGEISS 327 (716)
Q Consensus 251 ~~~~~--~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~ 327 (716)
.+|. .+..++.|+.|++++|++.|.+| .+.++++|+.|++++|+++ .+|..+..+++ |++|++++|.++ .+|.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 4444 45555555555555555555555 5555566666666666655 44444555555 666666666665 4444
Q ss_pred CCCCCC--CCCEEEcccCcCcccCccccc-------CCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCC
Q 041300 328 NWGKCP--KLGTLNVSMNNITGGIPREIG-------NMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP 398 (716)
Q Consensus 328 ~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 398 (716)
.+..++ +|+.|++++|.+++..|..+. .+++|++|++++|+++...+..+..+++|+.|+|++|+++ .+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence 444433 566666666666665555555 5556666666666666332333444666666666666666 333
Q ss_pred ccc-CCC-------CCCCEEEccCCcCCccCchhhc--CcCCCCEEECcCCcCcccCChhhhCCCCCCEEEC------CC
Q 041300 399 TEI-GSL-------IELEYLDFSANKFNNSVPESLG--NLLKLHYLGLSNNQFVLELPKELEKLVQLSELDA------SH 462 (716)
Q Consensus 399 ~~~-~~l-------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l------s~ 462 (716)
..+ ... ++|+.|+|++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|++|++ ++
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred HHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence 322 222 26666666666666 4555554 66666666666666665 5666666666777666 56
Q ss_pred CcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccccc
Q 041300 463 NLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP 516 (716)
Q Consensus 463 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~ 516 (716)
|++.+.+|..+..+++|+.|++++|++ +.+|..+. ++|+.||+++|++...
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 778888888888888899999999988 45666554 7888999999987653
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-53 Score=482.66 Aligned_cols=493 Identities=23% Similarity=0.220 Sum_probs=406.2
Q ss_pred CCccee----eeeeCC----------CCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCC
Q 041300 38 SPCAWY----GISCND----------AGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLS 103 (716)
Q Consensus 38 ~~c~w~----gv~c~~----------~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 103 (716)
+||.|. .|.|.. ..+++.|++++|.+.+ +.+..|..+++|++|||++|.+.++.|.+|.++++|+
T Consensus 5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~ 83 (606)
T 3vq2_A 5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83 (606)
T ss_dssp -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence 577664 466753 2468999999999984 4467899999999999999999999999999999999
Q ss_pred EEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccC-CCCccccCCcCCcEEEeecc
Q 041300 104 YISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNG-SLPPFLGNLSNIVRLYINNN 182 (716)
Q Consensus 104 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~n 182 (716)
+|+|++|.+++..|..|+++++|++|+|++|.+.+..+..|+++++|++|++++|.+++ .+|..|+++++|++|++++|
T Consensus 84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 99999999998889999999999999999999998888889999999999999999986 56999999999999999999
Q ss_pred cccccccccccCCCCCc----eeeCCCCC-----cccCCCCccCEEEeeCCcCccc-CCCc-------------------
Q 041300 183 SLSGSILTNIGNLKFLF----ELDLSFLP-----LSVGNLTNLKSLGLMDNHLSGS-IPPS------------------- 233 (716)
Q Consensus 183 ~l~~~~~~~l~~l~~L~----~L~l~~~~-----~~~~~l~~L~~L~l~~n~l~~~-~~~~------------------- 233 (716)
.+++..+..+..+..|+ .++++... .......+|+.|++++|.+.+. .|..
T Consensus 164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred cceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence 99988888787776654 68877633 3334444899999999877521 1111
Q ss_pred --------------cccccccEEEc-cCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCC
Q 041300 234 --------------FGNSMLTWLTL-SGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLT 298 (716)
Q Consensus 234 --------------~~~~~L~~L~L-~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 298 (716)
.....++.+++ ..|.+.+..|. +..++.|+.+++++|.+.. +| .+..+++|+.|++++|.+
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l- 319 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL- 319 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-
T ss_pred CCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-
Confidence 11123555555 66777777776 7788899999999999864 44 788889999999999999
Q ss_pred CccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCccc--CcccccCCCCCCEEEccCCccccccCcc
Q 041300 299 GNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGG--IPREIGNMSQLQALDLSLNHIVGEIPKE 376 (716)
Q Consensus 299 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 376 (716)
+.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|++++. .|..+..+++|++|++++|.+++ +|..
T Consensus 320 ~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~ 394 (606)
T 3vq2_A 320 KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN 394 (606)
T ss_dssp SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC
T ss_pred cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhh
Confidence 4555 44 8899999999999655443 567889999999999998866 37788899999999999999884 6688
Q ss_pred cCCCCCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcc-cCChhhhCCCC
Q 041300 377 LGKLNSLTKLILRGNQLTGRLP-TEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVL-ELPKELEKLVQ 454 (716)
Q Consensus 377 ~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~ 454 (716)
+..+++|+.|++++|++.+..| ..+..+++|++|++++|.+.+..|..+.++++|++|++++|++++ ..|..+..+++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 8889999999999999987776 678889999999999999998888889999999999999999987 47888889999
Q ss_pred CCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCccccC-CCCcccccC
Q 041300 455 LSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFR-NAPVEALEG 533 (716)
Q Consensus 455 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~~~-~~~~~~~~~ 533 (716)
|++|++++|.+++..|..+..+++|+.|++++|++++.+|..|..+++|+.||+++|+++..++....+. ......+.+
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCS
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccC
Confidence 9999999999998888889999999999999999998889999999999999999999986544433443 356667888
Q ss_pred CCCCCCC
Q 041300 534 NKELCGG 540 (716)
Q Consensus 534 n~~~c~~ 540 (716)
|++.|..
T Consensus 555 N~~~c~c 561 (606)
T 3vq2_A 555 NSVACIC 561 (606)
T ss_dssp CCCCCSS
T ss_pred CCcccCC
Confidence 8888853
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.7e-54 Score=494.27 Aligned_cols=464 Identities=22% Similarity=0.248 Sum_probs=311.4
Q ss_pred hHHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCC--cce------------eeeeeCCCCCEEEEEcCCCCCcccc
Q 041300 2 NEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISP--CAW------------YGISCNDAGRVTNISLRNTGLSGTL 67 (716)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~--c~w------------~gv~c~~~~~v~~l~l~~~~l~~~~ 67 (716)
.+|++||++||+++ .+| +|.....+ ...+| |.| .||+|+..++|+.|+|+++++.|.+
T Consensus 268 ~~d~~ALl~~k~~l-~~~-----~W~~~~~~--~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 268 IKDYKALKAIWEAL-DGK-----NWRYYSGT--INNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp HHHHHHHHHHHHHT-TGG-----GCCCCCSS--CSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred hHHHHHHHHHHHHc-CCC-----CCCcCCCc--ccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence 47899999999999 444 79533211 11256 999 9999998899999999999999999
Q ss_pred CCCCCCCCCCCcEEEC-CCCCccccCcccc--------------------------------------------------
Q 041300 68 RDFSFSSFPQLVHLDL-SLNGFFGTIPSQI-------------------------------------------------- 96 (716)
Q Consensus 68 ~~~~f~~l~~L~~L~L-s~n~i~~~~~~~~-------------------------------------------------- 96 (716)
+.+|+.++.|++||| ++|.+.|..|...
T Consensus 340 -p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 340 -PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp -CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred -chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 468999999999999 8998876633211
Q ss_pred -cCCCCCCEEECc--CCcCcccCCccccCCCCCCEEEcccccCcc-----------------CCCcccc--CCCCCceee
Q 041300 97 -GNLTKLSYISLD--SNQLSGKIPAEVGLLTHLKVLSFQFNELDG-----------------SIPPEVC--QLSSIEELF 154 (716)
Q Consensus 97 -~~l~~L~~L~Ls--~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------------~~~~~~~--~l~~L~~L~ 154 (716)
.....++.+.+. +|.+++ +|..|+++++|++|+|++|.+++ .+|..++ ++++|++|+
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred cccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 112233334443 377887 78888999999999999999887 3777776 888888888
Q ss_pred cccccccCCCCccccCCcCCcEEEeeccc-ccc-cccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCC
Q 041300 155 LYSNHLNGSLPPFLGNLSNIVRLYINNNS-LSG-SILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP 232 (716)
Q Consensus 155 L~~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 232 (716)
|++|.+.+.+|..|+++++|+.|+|++|+ +++ .+|..++.++ ..+..+++|+.|++++|.++ .+|.
T Consensus 498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~-----------~~~~~l~~L~~L~Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA-----------DDEDTGPKIQIFYMGYNNLE-EFPA 565 (876)
T ss_dssp EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH-----------HCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh-----------hcccccCCccEEEeeCCcCC-ccCC
Confidence 88888888888888888888888888887 877 6776665443 12334567888888888887 5666
Q ss_pred --cccc-ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCC-CcEEEccCCcCCCccchhhCCC
Q 041300 233 --SFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTS-LIRVRLNGNNLTGNISEALGLY 308 (716)
Q Consensus 233 --~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~ 308 (716)
.+.. .+|+.|++++|.++ .+| .+..++.|+.|++++|.+. .+|..+.++++ |+.|++++|.++ .+|..+..+
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~ 641 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK 641 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence 5544 36777777777777 555 6667777777777777777 66666777776 777777777776 445555544
Q ss_pred CC--CCEEEccCCccccccCCCC---C--CCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCC--
Q 041300 309 PN--LTFIDLSRNNFYGEISSNW---G--KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGK-- 379 (716)
Q Consensus 309 ~~--L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-- 379 (716)
+. |+.|++++|.+.+.+|... . .+++|+.|+|++|+++...+..+..+++|+.|+|++|+++ .+|..+..
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence 33 7777777777766544221 1 2346677777777776433333446667777777777766 44433222
Q ss_pred ------CCCCcEEEccCCcccccCCcccC--CCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhC
Q 041300 380 ------LNSLTKLILRGNQLTGRLPTEIG--SLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEK 451 (716)
Q Consensus 380 ------l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 451 (716)
+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++|+
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~----------- 787 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR----------- 787 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-----------
T ss_pred cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-----------
Confidence 226666666666666 4555554 66666666666666665 45566666666666665532
Q ss_pred CCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccc
Q 041300 452 LVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG 515 (716)
Q Consensus 452 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~ 515 (716)
++++|.+.+.+|..+..+++|+.|+|++|+| +.+|..+. ++|+.||+++|++..
T Consensus 788 -------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 788 -------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp -------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred -------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 2223555555555555555555555555555 34444333 355555555555543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-52 Score=493.26 Aligned_cols=485 Identities=23% Similarity=0.212 Sum_probs=362.5
Q ss_pred cceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCcccc-CcccccCCCCCCEEECcCCcCcccCCc
Q 041300 40 CAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGT-IPSQIGNLTKLSYISLDSNQLSGKIPA 118 (716)
Q Consensus 40 c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 118 (716)
|.|..|.+ -..+++.|+|++|.+.+ +.+.+|..+++|++|||++|.+.+. .|.+|.++++|++|+|++|.+++..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 46777777 45689999999999984 4477899999999999999966544 488999999999999999999999999
Q ss_pred cccCCCCCCEEEcccccCccCCCcc--ccCCCCCceeecccccccCCCC-ccccCCcCCcEEEeecccccccccccccCC
Q 041300 119 EVGLLTHLKVLSFQFNELDGSIPPE--VCQLSSIEELFLYSNHLNGSLP-PFLGNLSNIVRLYINNNSLSGSILTNIGNL 195 (716)
Q Consensus 119 ~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 195 (716)
.|+++++|++|+|++|.+++.+|.. |.++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999999866665 9999999999999999988765 689999999999999999999888888887
Q ss_pred --CCCceeeCCCC------CcccCCCCc------cCEEEeeCCcCcccCCCcccc-------------------------
Q 041300 196 --KFLFELDLSFL------PLSVGNLTN------LKSLGLMDNHLSGSIPPSFGN------------------------- 236 (716)
Q Consensus 196 --~~L~~L~l~~~------~~~~~~l~~------L~~L~l~~n~l~~~~~~~~~~------------------------- 236 (716)
+.|+.|+++.. |..+..+.+ |+.|++++|.+.+..+..+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 88999988753 334444443 999999999887666554321
Q ss_pred --------------ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccc
Q 041300 237 --------------SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNIS 302 (716)
Q Consensus 237 --------------~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 302 (716)
..++.|++++|.+.+..+..+..++.|+.|++++|.+.+..|..|..+++|+.|++++|.+++..+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 357777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCC
Q 041300 303 EALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNS 382 (716)
Q Consensus 303 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 382 (716)
..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++. ..+++|+.|++++|+++ .+|.. ..+
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~ 402 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLT 402 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTT
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccc
Confidence 7777777777777777777777666777777777777777777632 22566777777777766 33332 334
Q ss_pred CcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCccCch-hhcCcCCCCEEECcCCcCc-----ccCChhhhCCCCC
Q 041300 383 LTKLILRGNQLTGRLP-TEIGSLIELEYLDFSANKFNNSVPE-SLGNLLKLHYLGLSNNQFV-----LELPKELEKLVQL 455 (716)
Q Consensus 383 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L 455 (716)
++.|++++|++++... ..+..+++|+.|+|++|.+++..+. .+..+++|+.|++++|.++ +..+..|.++++|
T Consensus 403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L 482 (844)
T 3j0a_A 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482 (844)
T ss_dssp CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc
Confidence 5666666666654211 1234667777777777777654332 3445667777777777765 2334456667777
Q ss_pred CEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCccccCCCCcccccCCC
Q 041300 456 SELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNK 535 (716)
Q Consensus 456 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 535 (716)
++|+|++|.+++..|..+..+++|+.|+|++|+|++..+..+. ++|+.||+++|++++.+|.. +.......+.+|+
T Consensus 483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np 558 (844)
T 3j0a_A 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNK 558 (844)
T ss_dssp ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEEC
T ss_pred cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCC
Confidence 7777777777777777777777777777777777776666655 66777777777777766643 4455555666777
Q ss_pred CCCC
Q 041300 536 ELCG 539 (716)
Q Consensus 536 ~~c~ 539 (716)
+.|.
T Consensus 559 ~~C~ 562 (844)
T 3j0a_A 559 FICE 562 (844)
T ss_dssp CCCS
T ss_pred cccc
Confidence 7663
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-50 Score=465.82 Aligned_cols=478 Identities=22% Similarity=0.205 Sum_probs=373.5
Q ss_pred EEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccc
Q 041300 55 NISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFN 134 (716)
Q Consensus 55 ~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (716)
.++.+++++. .++. .+. +++++|+|++|.+.++.+..|.++++|++|+|++|.+++..|..|+.+++|++|+|++|
T Consensus 8 ~~~cs~~~L~-~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 8 VADCSHLKLT-QVPD-DLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp EEECCSSCCS-SCCS-CSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eeECCCCCcc-cccc-ccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 4666677775 4432 232 78999999999999988889999999999999999999999999999999999999999
Q ss_pred cCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCc------
Q 041300 135 ELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPL------ 208 (716)
Q Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~------ 208 (716)
.+++..+..|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++..+..+.+++.|++|+++....
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 99977777899999999999999999988889999999999999999999999999999999999999986432
Q ss_pred c--cCCCCccCEEEeeCCcCcccCCCcccc----------------------------ccccEEEccCCcCccccCcccc
Q 041300 209 S--VGNLTNLKSLGLMDNHLSGSIPPSFGN----------------------------SMLTWLTLSGNHFTGYLPHNIC 258 (716)
Q Consensus 209 ~--~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------~~L~~L~L~~n~l~~~~~~~~~ 258 (716)
. +..+++|++|++++|.+++..|..+.. ..|+.|++++|.+++..+..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 2 235689999999999999887765542 4588899999999999888888
Q ss_pred CCCC--ccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCcccc-----ccC----C
Q 041300 259 RGGL--LEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYG-----EIS----S 327 (716)
Q Consensus 259 ~~~~--L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~~----~ 327 (716)
.++. |+.|++++|++.+..|..|.++++|+.|++++|.+++..+..+..+++|++|++++|...+ .+| .
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 7754 9999999999999999999999999999999999998877777766666666666554332 111 2
Q ss_pred CCCCCCCCCEEEcccCcCcccCcccccCCCC----------------------------CCEEEccCCccccccCcccCC
Q 041300 328 NWGKCPKLGTLNVSMNNITGGIPREIGNMSQ----------------------------LQALDLSLNHIVGEIPKELGK 379 (716)
Q Consensus 328 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----------------------------L~~L~L~~n~l~~~~~~~~~~ 379 (716)
.|..+++|++|++++|.+++..+..|.++++ |+.|++++|++++..|..+..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 4555556666666666655555554544444 444444556666666777888
Q ss_pred CCCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCc--ccCChhhhCCCCCC
Q 041300 380 LNSLTKLILRGNQLTGRLP-TEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV--LELPKELEKLVQLS 456 (716)
Q Consensus 380 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~ 456 (716)
+++|+.|++++|++++.+| ..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+. +..|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 8888888888888876555 56788888888888888888777777888888888888888775 45677777888888
Q ss_pred EEECCCCcCccccchhccCCCCCCEEECcCCcCcccCC--------cCCcCCCCCCEEEccCCcccccCCC-ccccCCCC
Q 041300 457 ELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIP--------NCFEGMHGLSIIDISDNQLQGPVPN-STAFRNAP 527 (716)
Q Consensus 457 ~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~--------~~~~~~~~L~~l~ls~N~l~~~~p~-~~~~~~~~ 527 (716)
.|++++|.+++..+..+..+++|+.|++++|++++..+ ..|.++++|+.|++++|+++...+. ...+....
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 88888888887777777778888888888888776422 2366777888888888887743332 23344444
Q ss_pred cccccCCCC
Q 041300 528 VEALEGNKE 536 (716)
Q Consensus 528 ~~~~~~n~~ 536 (716)
...+.+|..
T Consensus 564 ~L~Ls~N~l 572 (680)
T 1ziw_A 564 IIDLGLNNL 572 (680)
T ss_dssp EEECCSSCC
T ss_pred eeECCCCCC
Confidence 455555543
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-50 Score=458.95 Aligned_cols=459 Identities=19% Similarity=0.176 Sum_probs=403.6
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300 51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130 (716)
Q Consensus 51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 130 (716)
.+++.|++++|.+.+ +.+..|..+++|++|+|++|.+.+..|.+|.++++|++|+|++|.+++..+..|+.+++|++|+
T Consensus 56 ~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 56 SELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp TTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred ccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 479999999999984 5467899999999999999999999999999999999999999999988888999999999999
Q ss_pred cccccCcc-CCCccccCCCCCceeecccccccCCCCccccCCcCCc----EEEeecccccccccccccCCCCCceeeCCC
Q 041300 131 FQFNELDG-SIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIV----RLYINNNSLSGSILTNIGNLKFLFELDLSF 205 (716)
Q Consensus 131 L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 205 (716)
+++|.+.+ .+|..|.++++|++|++++|.+++..|..|+.+++|+ +|++++|.+++..+..+... .|+.|+++.
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~ 213 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG 213 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEES
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccC
Confidence 99999986 5699999999999999999999999999898887765 89999999987666666555 788888876
Q ss_pred CC-------cccCCCCccCEEEe---------------------------------eCCcCcccCCCccccccccEEEcc
Q 041300 206 LP-------LSVGNLTNLKSLGL---------------------------------MDNHLSGSIPPSFGNSMLTWLTLS 245 (716)
Q Consensus 206 ~~-------~~~~~l~~L~~L~l---------------------------------~~n~l~~~~~~~~~~~~L~~L~L~ 245 (716)
.. ..+.++++|+.+++ ..|.+.+..|.......|+.|+++
T Consensus 214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293 (606)
T ss_dssp CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEE
T ss_pred CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEec
Confidence 43 23445555555444 566777777773334589999999
Q ss_pred CCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccc-
Q 041300 246 GNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGE- 324 (716)
Q Consensus 246 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~- 324 (716)
+|.+... | .+..++.|+.|++++|.+ +.+| .+ .+++|+.|++++|...+.. .+..+++|++|++++|.+++.
T Consensus 294 ~~~~~~l-~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~ 366 (606)
T 3vq2_A 294 GVSIKYL-E-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSG 366 (606)
T ss_dssp SCCCCCC-C-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEE
T ss_pred Cccchhh-h-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCc
Confidence 9999764 4 788889999999999999 6777 45 9999999999999665443 677899999999999999876
Q ss_pred -cCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccC-cccCCCCCCcEEEccCCcccccCCcccC
Q 041300 325 -ISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP-KELGKLNSLTKLILRGNQLTGRLPTEIG 402 (716)
Q Consensus 325 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 402 (716)
.+..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+..+++|+.|++++|++++..|..+.
T Consensus 367 ~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 367 CCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445 (606)
T ss_dssp ECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred chhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence 37788899999999999999985 56889999999999999999998877 6899999999999999999999999999
Q ss_pred CCCCCCEEEccCCcCCc-cCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCE
Q 041300 403 SLIELEYLDFSANKFNN-SVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEK 481 (716)
Q Consensus 403 ~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 481 (716)
.+++|++|++++|.+.+ ..|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 99999999999999997 47889999999999999999999999999999999999999999999999999999999999
Q ss_pred EECcCCcCcccCCcCCcCCC-CCCEEEccCCcccccCCCc
Q 041300 482 LNLSHNNLSGLIPNCFEGMH-GLSIIDISDNQLQGPVPNS 520 (716)
Q Consensus 482 L~ls~N~l~~~~~~~~~~~~-~L~~l~ls~N~l~~~~p~~ 520 (716)
|++++|+++. +|..+..++ +|+.+++++|++.+..+..
T Consensus 526 L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 526 LDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp EECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred EECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999999995 555588887 5999999999999877653
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-50 Score=454.43 Aligned_cols=462 Identities=22% Similarity=0.214 Sum_probs=401.9
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300 51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130 (716)
Q Consensus 51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 130 (716)
.+++.|++++|.+.+ +.+.+|..+++|++|||++|.+.++.+..|.++++|++|+|++|.+++..|..|+.+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 468999999999984 5567899999999999999999998899999999999999999999988889999999999999
Q ss_pred cccccCccCCCccccCCCCCceeecccccccC-CCCccccCCcCCcEEEeecccccccccccccCCCCC----ceeeCCC
Q 041300 131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNG-SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFL----FELDLSF 205 (716)
Q Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~ 205 (716)
+++|.+++..+..|+++++|++|++++|.+++ ..|..|+++++|++|++++|.+++..+..+..++.| ..++++.
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 99999997777689999999999999999987 469999999999999999999998888888888877 7788775
Q ss_pred CC------cccCCCCccCEEEeeCCcCcc-------------------------------cCCCcc---ccccccEEEcc
Q 041300 206 LP------LSVGNLTNLKSLGLMDNHLSG-------------------------------SIPPSF---GNSMLTWLTLS 245 (716)
Q Consensus 206 ~~------~~~~~l~~L~~L~l~~n~l~~-------------------------------~~~~~~---~~~~L~~L~L~ 245 (716)
.. ..+.. .+|+.|++++|.... .....+ ....++.++++
T Consensus 187 n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 187 NPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp CCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCceecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 42 23333 378999888874221 001111 11246777777
Q ss_pred CC-cCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccc
Q 041300 246 GN-HFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGE 324 (716)
Q Consensus 246 ~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 324 (716)
++ .+.+..+..+..++.|+.|++++|.+. .+|..+..+ +|+.|++++|.+..... ..+++|+.|++++|.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCB
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCccccc
Confidence 77 777788888889999999999999998 578888888 99999999999984433 4678999999999998876
Q ss_pred cCCCCCCCCCCCEEEcccCcCcccC--cccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCC-ccc
Q 041300 325 ISSNWGKCPKLGTLNVSMNNITGGI--PREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP-TEI 401 (716)
Q Consensus 325 ~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~ 401 (716)
.+. ..+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|++++..+ ..+
T Consensus 341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT
T ss_pred ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh
Confidence 654 78899999999999998664 67889999999999999999865544 9999999999999999997766 468
Q ss_pred CCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCc-ccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCC
Q 041300 402 GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV-LELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLE 480 (716)
Q Consensus 402 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 480 (716)
..+++|++|++++|.+.+..|..+.++++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 89999999999999999999999999999999999999997 57889999999999999999999998899999999999
Q ss_pred EEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCccc
Q 041300 481 KLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTA 522 (716)
Q Consensus 481 ~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~ 522 (716)
.|++++|++++.+|..|..+++|+.|++++|+++|.+|....
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 999999999999899999999999999999999999887543
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-49 Score=463.26 Aligned_cols=455 Identities=20% Similarity=0.166 Sum_probs=401.0
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCcc--ccCCCCCCE
Q 041300 51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAE--VGLLTHLKV 128 (716)
Q Consensus 51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~ 128 (716)
..++.|+|++|...+.+.+.+|.++++|++|+|++|.+.+..|.+|.++++|++|+|++|.+++.+|.. |+.+++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 478999999998888888889999999999999999999999999999999999999999999866665 999999999
Q ss_pred EEcccccCccCCC-ccccCCCCCceeecccccccCCCCccccCC--cCCcEEEeecccccccccccccCCCC------Cc
Q 041300 129 LSFQFNELDGSIP-PEVCQLSSIEELFLYSNHLNGSLPPFLGNL--SNIVRLYINNNSLSGSILTNIGNLKF------LF 199 (716)
Q Consensus 129 L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~ 199 (716)
|+|++|.+.+..+ ..|.++++|++|+|++|.+++..|..|..+ ++|+.|++++|.+++..+..+..+.. |+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 9999999987765 579999999999999999999999999888 89999999999999888877776665 88
Q ss_pred eeeCCCCC------cc------------------------------------cCC--CCccCEEEeeCCcCcccCCCccc
Q 041300 200 ELDLSFLP------LS------------------------------------VGN--LTNLKSLGLMDNHLSGSIPPSFG 235 (716)
Q Consensus 200 ~L~l~~~~------~~------------------------------------~~~--l~~L~~L~l~~n~l~~~~~~~~~ 235 (716)
.|+++... .. +.. .++|+.|++++|.+.+..|..|.
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 88887531 11 111 26899999999999988888776
Q ss_pred cc-cccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEE
Q 041300 236 NS-MLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFI 314 (716)
Q Consensus 236 ~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 314 (716)
.. .|+.|++++|.+++..+..|..++.|+.|++++|.+.+..|..|..+++|+.|++++|.+++..+..|..+++|++|
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEE
T ss_pred cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEE
Confidence 64 89999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred EccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccC-cccCCCCCCcEEEccCCcc
Q 041300 315 DLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP-KELGKLNSLTKLILRGNQL 393 (716)
Q Consensus 315 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l 393 (716)
++++|.+++. ..+++|+.|++++|+++. +|.. ..+++.|++++|++++... ..+..+++|+.|+|++|++
T Consensus 368 ~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 368 DLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp EEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred ECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence 9999999854 237899999999999984 4433 5689999999999986432 2356899999999999999
Q ss_pred cccCCc-ccCCCCCCCEEEccCCcCC-----ccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcc
Q 041300 394 TGRLPT-EIGSLIELEYLDFSANKFN-----NSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG 467 (716)
Q Consensus 394 ~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 467 (716)
++..+. .+..+++|+.|+|++|.++ +..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++
T Consensus 439 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp CCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred cccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence 865443 3567899999999999997 4445678899999999999999999889999999999999999999998
Q ss_pred ccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCC
Q 041300 468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPN 519 (716)
Q Consensus 468 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~ 519 (716)
..|..+. ++|+.|++++|+|++.+|..|. +|+.+++++|++.|.++.
T Consensus 519 l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 519 LSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred cChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc
Confidence 7777665 8999999999999999998764 789999999999987764
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-49 Score=445.14 Aligned_cols=468 Identities=19% Similarity=0.190 Sum_probs=387.3
Q ss_pred CcceeeeeeCCC------------CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEE
Q 041300 39 PCAWYGISCNDA------------GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYIS 106 (716)
Q Consensus 39 ~c~w~gv~c~~~------------~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 106 (716)
+|.|.|+ |+.. .+++.|++++|++.+. .+..|..+++|++|+|++|++.+..|.+|.++++|++|+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 5899998 8632 2689999999999854 466899999999999999999999999999999999999
Q ss_pred CcCCcCcccCCccccCCCCCCEEEcccccCccC-CCccccCCCCCceeeccccc-ccCCCCccccCCcCCcEEEeecccc
Q 041300 107 LDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGS-IPPEVCQLSSIEELFLYSNH-LNGSLPPFLGNLSNIVRLYINNNSL 184 (716)
Q Consensus 107 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~n~l 184 (716)
|++|.+++..|..|+.+++|++|++++|.+++. .|..|.++++|++|++++|. +....+..|.++++|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 999999988888899999999999999999863 56789999999999999998 4444457899999999999999999
Q ss_pred cccccccccCCCCCceeeCCCCCc-----c-cCCCCccCEEEeeCCcCcccC--CCcc--ccccccEEEccCCcCccccC
Q 041300 185 SGSILTNIGNLKFLFELDLSFLPL-----S-VGNLTNLKSLGLMDNHLSGSI--PPSF--GNSMLTWLTLSGNHFTGYLP 254 (716)
Q Consensus 185 ~~~~~~~l~~l~~L~~L~l~~~~~-----~-~~~l~~L~~L~l~~n~l~~~~--~~~~--~~~~L~~L~L~~n~l~~~~~ 254 (716)
++..+..+..++.|+.|+++.... . +..+++|++|++++|.+.+.. |..+ ....|+.|++++|.+++..+
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 999999999999999999865432 1 246889999999999998742 1111 23479999999999887544
Q ss_pred c----cccCCCCccEEEecCCcccccC------CcccccCCCCcEEEccCCcCCCc-----cchhhCCCCCCCEEEccCC
Q 041300 255 H----NICRGGLLEAFIVSENHFQGTI------PESLRNCTSLIRVRLNGNNLTGN-----ISEALGLYPNLTFIDLSRN 319 (716)
Q Consensus 255 ~----~~~~~~~L~~L~l~~n~l~~~~------p~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~Ls~n 319 (716)
. .+.....|+.+++++|.+.+.. ...+..+.+|+.|.+.++.+... .+..+...++|+.|++++|
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 3 3455788999999999887642 23456778999999999887643 1222344578999999999
Q ss_pred ccccccCCCC-CCCCCCCEEEcccCcCcccCcc---cccCCCCCCEEEccCCccccccC--cccCCCCCCcEEEccCCcc
Q 041300 320 NFYGEISSNW-GKCPKLGTLNVSMNNITGGIPR---EIGNMSQLQALDLSLNHIVGEIP--KELGKLNSLTKLILRGNQL 393 (716)
Q Consensus 320 ~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l 393 (716)
.+.. +|..+ ..+++|++|++++|++++..|. .++.+++|++|++++|++++..+ ..+..+++|++|++++|++
T Consensus 321 ~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 321 KVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp CCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred cccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 9874 45444 5799999999999999987643 47889999999999999986533 4588899999999999999
Q ss_pred cccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhc
Q 041300 394 TGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQI 473 (716)
Q Consensus 394 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~ 473 (716)
+ .+|..+..+++|++|++++|.++. +|..+ .++|++|++++|++++.. ..+++|++|++++|+++ .+|. .
T Consensus 400 ~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~ 469 (549)
T 2z81_A 400 H-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-A 469 (549)
T ss_dssp C-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-G
T ss_pred c-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-c
Confidence 8 678889999999999999999984 44333 268999999999998643 47889999999999998 5665 4
Q ss_pred cCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCC
Q 041300 474 CSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPN 519 (716)
Q Consensus 474 ~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~ 519 (716)
..+++|+.|++++|++++.+|..|..+++|+.|++++|++.|.+|.
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 6789999999999999999999999999999999999999988774
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-47 Score=431.57 Aligned_cols=472 Identities=20% Similarity=0.185 Sum_probs=403.3
Q ss_pred EEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEccccc
Q 041300 56 ISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNE 135 (716)
Q Consensus 56 l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 135 (716)
++.++.++. .++. .+ .+.+++|||++|.+.++.+.+|.++++|++|+|++|.+++..|..|+.+++|++|+|++|.
T Consensus 12 ~~c~~~~l~-~ip~-~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 12 YQCMELNFY-KIPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EECCSSCCS-SCCS-SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEeCCCCcc-ccCC-Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 444455554 3422 22 2579999999999999999999999999999999999998888999999999999999999
Q ss_pred CccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccc-cccccccCCCCCceeeCCCC------Cc
Q 041300 136 LDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSG-SILTNIGNLKFLFELDLSFL------PL 208 (716)
Q Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~~------~~ 208 (716)
+++..|..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|..++++++|+.|+++.. +.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 998888999999999999999999998877789999999999999999987 46889999999999999864 34
Q ss_pred ccCCCCcc----CEEEeeCCcCcccCCCccccccccEEEccCCcCcc-------------------------------cc
Q 041300 209 SVGNLTNL----KSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTG-------------------------------YL 253 (716)
Q Consensus 209 ~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~-------------------------------~~ 253 (716)
.+..+++| +.|++++|.+.+..|..+....|+.|++++|.... ..
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 56666777 89999999999988888887789999999884321 11
Q ss_pred CccccCCC--CccEEEecCC-cccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCC
Q 041300 254 PHNICRGG--LLEAFIVSEN-HFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWG 330 (716)
Q Consensus 254 ~~~~~~~~--~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 330 (716)
...+..+. .++.+.++.+ .+.+..|..+..+++|+.|++++|.++. +|..+..+ +|++|++++|.+.. +|. .
T Consensus 248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~-l~~--~ 322 (570)
T 2z63_A 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQ-FPT--L 322 (570)
T ss_dssp TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSS-CCB--C
T ss_pred hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccc-cCc--c
Confidence 11111111 3566777777 7778889999999999999999999985 56667777 99999999999984 343 4
Q ss_pred CCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCcccccc--CcccCCCCCCcEEEccCCcccccCCcccCCCCCCC
Q 041300 331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEI--PKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELE 408 (716)
Q Consensus 331 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 408 (716)
.+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. |..+..+++|+.|++++|++++..+. +..+++|+
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~ 399 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE 399 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCC
T ss_pred cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCC
Confidence 789999999999999876655 78999999999999998654 67788999999999999999965544 99999999
Q ss_pred EEEccCCcCCccCc-hhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCc-cccchhccCCCCCCEEECcC
Q 041300 409 YLDFSANKFNNSVP-ESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFG-GEIPFQICSLKSLEKLNLSH 486 (716)
Q Consensus 409 ~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~l~~L~~L~ls~ 486 (716)
.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+. +.+|..+..+++|+.|++++
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence 99999999987766 57899999999999999999999999999999999999999998 57899999999999999999
Q ss_pred CcCcccCCcCCcCCCCCCEEEccCCcccccCCCc-cccCCCCcccccCCCCCCC
Q 041300 487 NNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS-TAFRNAPVEALEGNKELCG 539 (716)
Q Consensus 487 N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~ 539 (716)
|++++..|..|..+++|+.|++++|++++.+|.. ..+.......+.+|+..|.
T Consensus 480 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 9999999999999999999999999999877653 4556666777888988875
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.1e-46 Score=417.50 Aligned_cols=476 Identities=22% Similarity=0.235 Sum_probs=383.5
Q ss_pred eeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCC
Q 041300 45 ISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLT 124 (716)
Q Consensus 45 v~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 124 (716)
.+|...| + .|.++++++ .++.. + .++|++|||++|.+.+..|..|.++++|++|+|++|.+++..|.+|+.++
T Consensus 2 ~~C~~~~-~--c~~~~~~l~-~ip~~-~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 74 (549)
T 2z81_A 2 LSCDASG-V--CDGRSRSFT-SIPSG-L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74 (549)
T ss_dssp CEECTTS-E--EECTTSCCS-SCCSC-C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccCCCCc-e--EECCCCccc-ccccc-C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc
Confidence 4687655 3 789999887 55442 2 37999999999999999999999999999999999999998899999999
Q ss_pred CCCEEEcccccCccCCCccccCCCCCceeecccccccCC-CCccccCCcCCcEEEeecccccccc-cccccCCCCCceee
Q 041300 125 HLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGS-LPPFLGNLSNIVRLYINNNSLSGSI-LTNIGNLKFLFELD 202 (716)
Q Consensus 125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ 202 (716)
+|++|+|++|.+++..|..|.++++|++|+|++|.+++. .|..|+++++|++|++++|.+.+.+ +..+..++.|++|+
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence 999999999999988888899999999999999999874 5788999999999999999844444 46888999999888
Q ss_pred CCC------CCcccCCCCccCEEEeeCCcCcccCCCcc-c-cccccEEEccCCcCcccc--C-ccccCCCCccEEEecCC
Q 041300 203 LSF------LPLSVGNLTNLKSLGLMDNHLSGSIPPSF-G-NSMLTWLTLSGNHFTGYL--P-HNICRGGLLEAFIVSEN 271 (716)
Q Consensus 203 l~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~-~~~L~~L~L~~n~l~~~~--~-~~~~~~~~L~~L~l~~n 271 (716)
++. .|..+..+++|++|+++.|.+.. +|..+ . ..+|++|++++|.+++.. + ......+.|+.|++++|
T Consensus 155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred ccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 764 46677888899999999888763 33333 2 347899999999888752 1 22334678889999998
Q ss_pred cccccCC----cccccCCCCcEEEccCCcCCCcc------chhhCCCCCCCEEEccCCcccccc-----CCCCCCCCCCC
Q 041300 272 HFQGTIP----ESLRNCTSLIRVRLNGNNLTGNI------SEALGLYPNLTFIDLSRNNFYGEI-----SSNWGKCPKLG 336 (716)
Q Consensus 272 ~l~~~~p----~~l~~l~~L~~L~l~~n~l~~~~------~~~~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~ 336 (716)
.+.+..+ ..+..+++|+.+++++|.+.+.. ...+..+++++.|++.++.+.... +..+...++|+
T Consensus 234 ~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence 8876443 33466788999999998876532 233566788999999888765421 11123357899
Q ss_pred EEEcccCcCcccCcccc-cCCCCCCEEEccCCccccccCc---ccCCCCCCcEEEccCCcccccCC--cccCCCCCCCEE
Q 041300 337 TLNVSMNNITGGIPREI-GNMSQLQALDLSLNHIVGEIPK---ELGKLNSLTKLILRGNQLTGRLP--TEIGSLIELEYL 410 (716)
Q Consensus 337 ~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L 410 (716)
.|++++|.+. .+|..+ ..+++|++|++++|++++..|. .+..+++|+.|++++|++++..+ ..+..+++|++|
T Consensus 314 ~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L 392 (549)
T 2z81_A 314 RITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392 (549)
T ss_dssp EEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred EEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEE
Confidence 9999999998 555555 6799999999999999987643 47789999999999999986532 458899999999
Q ss_pred EccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300 411 DFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS 490 (716)
Q Consensus 411 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 490 (716)
++++|.++ .+|..+..+++|++|++++|+++. +|..+ .++|++|++++|++++.+ ..+++|++|++++|+|+
T Consensus 393 ~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK 464 (549)
T ss_dssp ECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred ECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC
Confidence 99999998 678888999999999999999974 44443 258999999999998753 57899999999999999
Q ss_pred ccCCcCCcCCCCCCEEEccCCcccccCCC-ccccCCCCcccccCCCCCCC
Q 041300 491 GLIPNCFEGMHGLSIIDISDNQLQGPVPN-STAFRNAPVEALEGNKELCG 539 (716)
Q Consensus 491 ~~~~~~~~~~~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~~c~ 539 (716)
. +|. ...+++|+.||+++|++++.+|. ...+.......+.+|++.|.
T Consensus 465 ~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 465 T-LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp S-CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred c-CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 5 554 46789999999999999998776 35566677777888887773
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.5e-45 Score=419.63 Aligned_cols=472 Identities=22% Similarity=0.252 Sum_probs=351.7
Q ss_pred CCccee----eeeeCCC----------CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCC
Q 041300 38 SPCAWY----GISCNDA----------GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLS 103 (716)
Q Consensus 38 ~~c~w~----gv~c~~~----------~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 103 (716)
+||.+. .|.|... ..++.|||++|.|+ .+++.+|.++++|++|||++|+|.++.|.+|.++++|+
T Consensus 25 ~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~ 103 (635)
T 4g8a_A 25 EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 103 (635)
T ss_dssp CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCC
Confidence 567654 3678631 36899999999998 56678999999999999999999999999999999999
Q ss_pred EEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCC-CCccccCCcCCcEEEeecc
Q 041300 104 YISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGS-LPPFLGNLSNIVRLYINNN 182 (716)
Q Consensus 104 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~n 182 (716)
+|+|++|+|++..+..|+++++|++|+|++|.+++..+..|+++++|++|+|++|.+++. .|..++.+++|++|++++|
T Consensus 104 ~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 104 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp EEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 999999999988888899999999999999999988888899999999999999999764 5788999999999999999
Q ss_pred cccccccccccCCCCCc----eeeCCCCC-----cccCCCCccCEEEeeCCcCcccCC----------------------
Q 041300 183 SLSGSILTNIGNLKFLF----ELDLSFLP-----LSVGNLTNLKSLGLMDNHLSGSIP---------------------- 231 (716)
Q Consensus 183 ~l~~~~~~~l~~l~~L~----~L~l~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~---------------------- 231 (716)
++++..+..+..+..++ .++++..+ ........++.+++.+|......+
T Consensus 184 ~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 184 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred cccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 99988887777665543 45554432 233334455666666654321100
Q ss_pred ---------Ccccc----------------------------ccccEEEccCCcCccccCccccCCCCccEEEecCCccc
Q 041300 232 ---------PSFGN----------------------------SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQ 274 (716)
Q Consensus 232 ---------~~~~~----------------------------~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (716)
..+.. ..++.+++.++.+... ..+.....++.|++.+|.+.
T Consensus 264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~ 341 (635)
T 4g8a_A 264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFG 341 (635)
T ss_dssp SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEES
T ss_pred ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhccccccc
Confidence 00000 0233333333333222 12233445566666666655
Q ss_pred ccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCcccc--ccCCCCCCCCCCCEEEcccCcCcccCccc
Q 041300 275 GTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYG--EISSNWGKCPKLGTLNVSMNNITGGIPRE 352 (716)
Q Consensus 275 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 352 (716)
...+. .+..|+.+.+..|.+.... ....+++|+.+++++|.+.. ..+..+..+.+|+.|++..|.+.. .+..
T Consensus 342 ~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~ 415 (635)
T 4g8a_A 342 QFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSN 415 (635)
T ss_dssp SCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSC
T ss_pred CcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccc
Confidence 43332 3445666666666554332 23356778888888887754 234445567778888888777764 3456
Q ss_pred ccCCCCCCEEEccCCccccccC-cccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcC-CccCchhhcCcCC
Q 041300 353 IGNMSQLQALDLSLNHIVGEIP-KELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKF-NNSVPESLGNLLK 430 (716)
Q Consensus 353 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~ 430 (716)
+..+++|+.++++.|......+ ..+..+++++.++++.|.+.+..+..+..++.|+.|+|++|.+ .+..|..|..+++
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~ 495 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 495 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc
Confidence 7778888888888877765443 4577888888899999988888888888888899999988874 3456778888888
Q ss_pred CCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCC-CCCCEEEcc
Q 041300 431 LHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGM-HGLSIIDIS 509 (716)
Q Consensus 431 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~-~~L~~l~ls 509 (716)
|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|+|++..|+.|..+ ++|++|+++
T Consensus 496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 9999999999888888888888899999999999888888888888899999999999988888888887 578999999
Q ss_pred CCcccccCC
Q 041300 510 DNQLQGPVP 518 (716)
Q Consensus 510 ~N~l~~~~p 518 (716)
+|++.+...
T Consensus 576 ~Np~~C~C~ 584 (635)
T 4g8a_A 576 QNDFACTCE 584 (635)
T ss_dssp TCCBCCSGG
T ss_pred CCCCcccCC
Confidence 999887654
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.3e-46 Score=415.01 Aligned_cols=431 Identities=20% Similarity=0.216 Sum_probs=253.8
Q ss_pred EEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEccc
Q 041300 54 TNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQF 133 (716)
Q Consensus 54 ~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 133 (716)
+.|+++++++. .++. .+. ++|++|||++|.+.+..|..|.++++|++|+|++|.+++..|..|+.+++|++|+|++
T Consensus 3 ~~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-cccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 46899999998 4643 333 8999999999999988888999999999999999999988899999999999999999
Q ss_pred ccCccCCCccccCCCCCceeecccccccC-CCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCC
Q 041300 134 NELDGSIPPEVCQLSSIEELFLYSNHLNG-SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGN 212 (716)
Q Consensus 134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 212 (716)
|.++. +|.. .+++|++|+|++|.+++ ..|..|+++++|++|++++|.+++. .+..++.|
T Consensus 79 N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L-------------- 138 (520)
T 2z7x_B 79 NKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHL-------------- 138 (520)
T ss_dssp SCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTS--------------
T ss_pred Cceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccc--------------
Confidence 99984 5555 89999999999999987 4689999999999999999998863 34444433
Q ss_pred CCccCEEEeeCCcC--cccCCCccccc--cccEEEccCCcCccccCc-cccCCCCccEEEecCCc-------ccccCCcc
Q 041300 213 LTNLKSLGLMDNHL--SGSIPPSFGNS--MLTWLTLSGNHFTGYLPH-NICRGGLLEAFIVSENH-------FQGTIPES 280 (716)
Q Consensus 213 l~~L~~L~l~~n~l--~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~-------l~~~~p~~ 280 (716)
+|+.|++++|.+ .+..|..+... ....+++++|.+.+..+. .+..++.|+.+++++|. +.+.+| .
T Consensus 139 --~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~ 215 (520)
T 2z7x_B 139 --NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-K 215 (520)
T ss_dssp --CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-G
T ss_pred --eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-h
Confidence 125555555555 44444444332 133344555554443332 23444555555555554 333333 4
Q ss_pred cccCCCCcEEEccCCcCCCccchhhC---CCCCCCEEEccCCccccccCCCC-----CCCCCCCEEEcccCcCcccCc-c
Q 041300 281 LRNCTSLIRVRLNGNNLTGNISEALG---LYPNLTFIDLSRNNFYGEISSNW-----GKCPKLGTLNVSMNNITGGIP-R 351 (716)
Q Consensus 281 l~~l~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~ 351 (716)
+..+++|+.|++++|.+++.....+. ..++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+| .
T Consensus 216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~ 293 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQS 293 (520)
T ss_dssp GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTH
T ss_pred hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchh
Confidence 44555555555555544432111110 12345555555555554444444 4445555555555544 222 2
Q ss_pred cc-------------------------cCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccc--cCCcccCCC
Q 041300 352 EI-------------------------GNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTG--RLPTEIGSL 404 (716)
Q Consensus 352 ~~-------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l 404 (716)
.+ ..+++|++|++++|++++..|..+..+++|+.|++++|++++ .+|..+..+
T Consensus 294 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l 373 (520)
T 2z7x_B 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373 (520)
T ss_dssp HHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC
T ss_pred hhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC
Confidence 22 344555555555555554445555555555555555555543 233344555
Q ss_pred CCCCEEEccCCcCCccCch-hhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEE
Q 041300 405 IELEYLDFSANKFNNSVPE-SLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLN 483 (716)
Q Consensus 405 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 483 (716)
++|++|++++|.+.+.+|. .+..+++|+.|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELN 450 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEE
Confidence 5555555555555542332 244455555555555555444443332 34555555555555 3444444555555555
Q ss_pred CcCCcCcccCCcCCcCCCCCCEEEccCCccccc
Q 041300 484 LSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP 516 (716)
Q Consensus 484 ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~ 516 (716)
+++|+++.+.+..|..+++|+.|++++|++++.
T Consensus 451 L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 555555533323345555555555555555443
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-47 Score=434.05 Aligned_cols=452 Identities=20% Similarity=0.258 Sum_probs=372.8
Q ss_pred CCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCc------c------cCCccccCCCCCCEEEcccccCccCCCcc
Q 041300 76 PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLS------G------KIPAEVGLLTHLKVLSFQFNELDGSIPPE 143 (716)
Q Consensus 76 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~------~------~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 143 (716)
.+++.|+|++|.+.|.+|.+|+++++|++|+|++|.+. + .+|... +..|+ +++++|.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 57889999999999999999999999999999999762 2 333333 45677 888888888877766
Q ss_pred ccCC-------------------CCCceeecc--cccccCCCCccccCCcCCcEEEeeccccccc-ccccccCCCCCcee
Q 041300 144 VCQL-------------------SSIEELFLY--SNHLNGSLPPFLGNLSNIVRLYINNNSLSGS-ILTNIGNLKFLFEL 201 (716)
Q Consensus 144 ~~~l-------------------~~L~~L~L~--~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L 201 (716)
+..+ ..++.+.+. +|.+++ +|..|+++++|++|+|++|.+++. ++..... ... ..
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~~~-~~ 234 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-ENS-EY 234 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC-TTS-HH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc-ccc-ch
Confidence 6521 123333333 688998 899999999999999999999974 1111000 000 00
Q ss_pred eCCCCCcccC--CCCccCEEEeeCCcCcccCCCccccc-cccEEEccCCc-Ccc-ccCccccCC------CCccEEEecC
Q 041300 202 DLSFLPLSVG--NLTNLKSLGLMDNHLSGSIPPSFGNS-MLTWLTLSGNH-FTG-YLPHNICRG------GLLEAFIVSE 270 (716)
Q Consensus 202 ~l~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~-l~~-~~~~~~~~~------~~L~~L~l~~ 270 (716)
..+.+|..+. ++++|++|++++|.+.+.+|..+... +|++|++++|. +++ .+|..+..+ +.|+.|++++
T Consensus 235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred hcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 0001455666 77799999999999999999888765 89999999998 998 888888776 8999999999
Q ss_pred CcccccCCc--ccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCC-CCEEEcccCcCcc
Q 041300 271 NHFQGTIPE--SLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPK-LGTLNVSMNNITG 347 (716)
Q Consensus 271 n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~ 347 (716)
|+++ .+|. .+.++++|+.|++++|+++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|+++
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 9999 7888 89999999999999999998888 8899999999999999999 77888999999 999999999999
Q ss_pred cCcccccCCC--CCCEEEccCCccccccCcccC-------CCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 041300 348 GIPREIGNMS--QLQALDLSLNHIVGEIPKELG-------KLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFN 418 (716)
Q Consensus 348 ~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 418 (716)
.+|..+..++ +|++|++++|.+++..|..+. .+++|+.|++++|+++...+..+..+++|++|+|++|.++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 7788877755 899999999999999998888 7889999999999999544444567999999999999999
Q ss_pred ccCchhhcCc-------CCCCEEECcCCcCcccCChhhh--CCCCCCEEECCCCcCccccchhccCCCCCCEEEC-----
Q 041300 419 NSVPESLGNL-------LKLHYLGLSNNQFVLELPKELE--KLVQLSELDASHNLFGGEIPFQICSLKSLEKLNL----- 484 (716)
Q Consensus 419 ~~~~~~~~~l-------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l----- 484 (716)
...+..+... ++|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBC
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcc
Confidence 4444444433 39999999999999 6888886 99999999999999997 8999999999999999
Q ss_pred -cCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCccccCCCCcccccCCCCCCCCC
Q 041300 485 -SHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV 541 (716)
Q Consensus 485 -s~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 541 (716)
++|++.+.+|..+..+++|+.|++++|++ +.+|.. .+.......+.+|+..|...
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISIDL 604 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEEC
T ss_pred cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCccccH
Confidence 56888999999999999999999999999 666654 23566677778888777543
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-45 Score=423.81 Aligned_cols=449 Identities=20% Similarity=0.243 Sum_probs=334.4
Q ss_pred CCCcEEECCCCCccccCcccccCCCCCCEEEC-cCCcCcccCCccccCC-CCCC-----EEEc----------ccccCcc
Q 041300 76 PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISL-DSNQLSGKIPAEVGLL-THLK-----VLSF----------QFNELDG 138 (716)
Q Consensus 76 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L-s~N~l~~~~p~~~~~l-~~L~-----~L~L----------~~N~l~~ 138 (716)
.+++.|+|++|.+.|.+|.+|++|++|++|+| ++|.+.|..|-..... ..+. .+.. ....+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57889999999999999999999999999999 8898877644221111 0000 0000 0000100
Q ss_pred -----------CCCccccCCCCCceeeccc--ccccCCCCccccCCcCCcEEEeeccccccc-ccccccCCCCCceeeCC
Q 041300 139 -----------SIPPEVCQLSSIEELFLYS--NHLNGSLPPFLGNLSNIVRLYINNNSLSGS-ILTNIGNLKFLFELDLS 204 (716)
Q Consensus 139 -----------~~~~~~~~l~~L~~L~L~~--N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~ 204 (716)
..+........++.+.+.. |.+++ +|..|+++++|+.|+|++|.+++. ++..+..... ..+ -.
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~-n~~-~g 479 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS-DYA-KQ 479 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS-HHH-HH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccc-ccc-cc
Confidence 0111112333455555554 78887 788888888888888888888872 1111110000 000 01
Q ss_pred CCCcccC--CCCccCEEEeeCCcCcccCCCccccc-cccEEEccCCc-Ccc-ccCccccCC-------CCccEEEecCCc
Q 041300 205 FLPLSVG--NLTNLKSLGLMDNHLSGSIPPSFGNS-MLTWLTLSGNH-FTG-YLPHNICRG-------GLLEAFIVSENH 272 (716)
Q Consensus 205 ~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~-l~~-~~~~~~~~~-------~~L~~L~l~~n~ 272 (716)
.+|..+. ++++|++|+|++|.+.+.+|..+... +|+.|++++|+ +++ .+|..+..+ +.|+.|++++|+
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 1234444 66688888888888888888777654 78889999887 887 677655544 489999999999
Q ss_pred ccccCCc--ccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCC-CCEEEcccCcCcccC
Q 041300 273 FQGTIPE--SLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPK-LGTLNVSMNNITGGI 349 (716)
Q Consensus 273 l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~ 349 (716)
++ .+|. .+.++++|+.|++++|+++ .+| .+..+++|+.|+|++|.+. .+|..+..+++ |+.|+|++|+++ .+
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 99 7787 8999999999999999998 556 8888999999999999998 77778888998 999999999998 67
Q ss_pred cccccCCCC--CCEEEccCCccccccCccc---C--CCCCCcEEEccCCcccccCCccc-CCCCCCCEEEccCCcCCccC
Q 041300 350 PREIGNMSQ--LQALDLSLNHIVGEIPKEL---G--KLNSLTKLILRGNQLTGRLPTEI-GSLIELEYLDFSANKFNNSV 421 (716)
Q Consensus 350 ~~~~~~l~~--L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~ 421 (716)
|..+..++. |+.|++++|++.+.+|... . .+++|+.|+|++|+++ .+|..+ ..+++|+.|+|++|.+. .+
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-cc
Confidence 777777654 9999999999987665332 2 3458999999999998 455554 58899999999999998 45
Q ss_pred chhhcC--------cCCCCEEECcCCcCcccCChhhh--CCCCCCEEECCCCcCccccchhccCCCCCCEEECcC-----
Q 041300 422 PESLGN--------LLKLHYLGLSNNQFVLELPKELE--KLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSH----- 486 (716)
Q Consensus 422 ~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~----- 486 (716)
|..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence 544332 238999999999998 6788886 89999999999999997 788889999999999976
Q ss_pred -CcCcccCCcCCcCCCCCCEEEccCCcccccCCCccccCCCCcccccCCCCCC
Q 041300 487 -NNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELC 538 (716)
Q Consensus 487 -N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~~c 538 (716)
|++.+.+|..|..+++|+.|++++|++ +.+|.. .+.......+.+|+...
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred cccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 888999999999999999999999999 677765 23455666677776544
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-45 Score=412.04 Aligned_cols=429 Identities=20% Similarity=0.182 Sum_probs=361.1
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300 51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130 (716)
Q Consensus 51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 130 (716)
.+++.|++++|.+.+ +.+..|..+++|++|+|++|++.+..|..|.++++|++|+|++|.++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 579999999999985 33457899999999999999999999999999999999999999999 45655 899999999
Q ss_pred cccccCcc-CCCccccCCCCCceeecccccccCCCCccccCCcCC--cEEEeecccc--cccccccccCCCC-CceeeCC
Q 041300 131 FQFNELDG-SIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNI--VRLYINNNSL--SGSILTNIGNLKF-LFELDLS 204 (716)
Q Consensus 131 L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~~-L~~L~l~ 204 (716)
|++|.+++ .+|..|+++++|++|++++|.+++ ..|..+++| +.|++++|.+ ++..|..+..+.. ...++++
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 99999997 478999999999999999999986 467888888 9999999999 7788888877663 1223333
Q ss_pred C-------CCcccCCCCccCEEEeeCCc-------CcccCCCccccccccEEEccCCcCccccCcccc---CCCCccEEE
Q 041300 205 F-------LPLSVGNLTNLKSLGLMDNH-------LSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNIC---RGGLLEAFI 267 (716)
Q Consensus 205 ~-------~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~ 267 (716)
. .+..+.++++|+.|++++|. +.+.+|.......|+.|++++|.+++..+..+. ..+.|+.|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 2 23356789999999999997 666555333445899999999988764332221 245899999
Q ss_pred ecCCcccccCCccc-----ccCCCCcEEEccCCcCCCccchhhCCC---CCCCEEEccCCccccccCCCCCCCCCCCEEE
Q 041300 268 VSENHFQGTIPESL-----RNCTSLIRVRLNGNNLTGNISEALGLY---PNLTFIDLSRNNFYGEISSNWGKCPKLGTLN 339 (716)
Q Consensus 268 l~~n~l~~~~p~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 339 (716)
+++|++.+.+|..+ .++++|+.+++++|.+ ..+...+..+ ++|+.|++++|.+.... .+..+++|++|+
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ 330 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence 99999999999988 8999999999999999 3332444333 67999999999987542 126889999999
Q ss_pred cccCcCcccCcccccCCCCCCEEEccCCcccc--ccCcccCCCCCCcEEEccCCcccccCCc-ccCCCCCCCEEEccCCc
Q 041300 340 VSMNNITGGIPREIGNMSQLQALDLSLNHIVG--EIPKELGKLNSLTKLILRGNQLTGRLPT-EIGSLIELEYLDFSANK 416 (716)
Q Consensus 340 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~ 416 (716)
+++|++++..|..+..+++|++|++++|++++ .+|..+..+++|+.|++++|++++.+|. .+..+++|+.|++++|.
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 99999999899999999999999999999996 5567899999999999999999984555 48889999999999999
Q ss_pred CCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCccc
Q 041300 417 FNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL 492 (716)
Q Consensus 417 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 492 (716)
+++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|++++.
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 9887776654 79999999999999 7888888999999999999999954444489999999999999999864
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.4e-42 Score=394.84 Aligned_cols=487 Identities=21% Similarity=0.178 Sum_probs=374.6
Q ss_pred CCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCC-CCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccC
Q 041300 38 SPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSF-PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKI 116 (716)
Q Consensus 38 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 116 (716)
-|..|..-.|...+ +.++-++.+++ .++. .+ +.+++|||++|+|+++.+.+|.++++|++|+|++|.|+++.
T Consensus 20 ~p~~~~~c~~~~~~--~~~~c~~~~l~-~vP~----~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~ 92 (635)
T 4g8a_A 20 IPESWEPCVEVVPN--ITYQCMELNFY-KIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 92 (635)
T ss_dssp -----CCSEEEETT--TEEECTTSCCS-SCCS----SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCCCCccccCCC--CEEECCCCCcC-ccCC----CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC
Confidence 47788765554322 34678888886 4432 23 37999999999999999999999999999999999999888
Q ss_pred CccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeeccccccc-ccccccCC
Q 041300 117 PAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGS-ILTNIGNL 195 (716)
Q Consensus 117 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l 195 (716)
|.+|+++++|++|+|++|++++..+..|.++++|++|+|++|.+++..+..|+++++|++|+|++|.+++. .+..+..+
T Consensus 93 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l 172 (635)
T 4g8a_A 93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 172 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccc
Confidence 88999999999999999999988888999999999999999999998888999999999999999999864 57788899
Q ss_pred CCCceeeCCCCC------cccCCCCc----cCEEEeeCCcCcccCCCccccccccEEEccCCcCcccc-CccccCCC---
Q 041300 196 KFLFELDLSFLP------LSVGNLTN----LKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYL-PHNICRGG--- 261 (716)
Q Consensus 196 ~~L~~L~l~~~~------~~~~~l~~----L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~--- 261 (716)
+.|++|+++... ..+..+.+ ...++++.|.+....+..+....+..+++.+|...... +..+..+.
T Consensus 173 ~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~ 252 (635)
T 4g8a_A 173 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 252 (635)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCE
T ss_pred hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccc
Confidence 999999988643 33333332 44788889998877777776667777888777543211 11112222
Q ss_pred ------------------------------------------------------CccEEEecCCcccccCCcccccCCCC
Q 041300 262 ------------------------------------------------------LLEAFIVSENHFQGTIPESLRNCTSL 287 (716)
Q Consensus 262 ------------------------------------------------------~L~~L~l~~n~l~~~~p~~l~~l~~L 287 (716)
.++.+.+..+.+.... .+..+..|
T Consensus 253 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L 330 (635)
T 4g8a_A 253 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGW 330 (635)
T ss_dssp EEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCC
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhh
Confidence 2233333333332211 23334455
Q ss_pred cEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcc--cCcccccCCCCCCEEEcc
Q 041300 288 IRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG--GIPREIGNMSQLQALDLS 365 (716)
Q Consensus 288 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~ 365 (716)
+.|++.+|.+...... .++.|+.++++.|.+... ..+..+++|+.|+++.|.+.. ..+..+..+.+|+.+++.
T Consensus 331 ~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~ 405 (635)
T 4g8a_A 331 QHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405 (635)
T ss_dssp SEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECC
T ss_pred hhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcc
Confidence 5666666555543332 245566666666655432 234467889999999988753 345566778889999999
Q ss_pred CCccccccCcccCCCCCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCc-c
Q 041300 366 LNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP-TEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV-L 443 (716)
Q Consensus 366 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 443 (716)
.|.+. ..+..+..+++|+.++++.|+.....+ ..+..+.+++.++++.|.+.+..+..+..++.|+.|++++|.+. +
T Consensus 406 ~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~ 484 (635)
T 4g8a_A 406 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484 (635)
T ss_dssp SCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred ccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc
Confidence 98887 456678889999999999988775544 45788999999999999999999999999999999999999854 4
Q ss_pred cCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCcc-c
Q 041300 444 ELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNST-A 522 (716)
Q Consensus 444 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~-~ 522 (716)
..|..|..+++|++|||++|++++..|..|.++++|+.|+|++|+|+++.|..|.++++|++||+++|++++..|..- .
T Consensus 485 ~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 578889999999999999999999999999999999999999999999999999999999999999999999887642 2
Q ss_pred c-CCCCcccccCCCCCCC
Q 041300 523 F-RNAPVEALEGNKELCG 539 (716)
Q Consensus 523 ~-~~~~~~~~~~n~~~c~ 539 (716)
+ .......+.+|++.|.
T Consensus 565 l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 565 FPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCTTCCEEECTTCCBCCS
T ss_pred hhCcCCEEEeeCCCCccc
Confidence 2 3456677899999994
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-43 Score=397.07 Aligned_cols=450 Identities=19% Similarity=0.163 Sum_probs=302.1
Q ss_pred EEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcc
Q 041300 53 VTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQ 132 (716)
Q Consensus 53 v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 132 (716)
.+.++++++++.+ ++.. + .++|++|||++|.+.+..|.+|.++++|++|+|++|.+++..|..|+.+++|++|+|+
T Consensus 33 ~~~l~ls~~~L~~-ip~~-~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKD-L--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCS-CCTT-S--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCcc-CCCC-C--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 3789999999984 5432 3 2899999999999999988999999999999999999999889999999999999999
Q ss_pred cccCccCCCccccCCCCCceeecccccccCC-CCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCC----
Q 041300 133 FNELDGSIPPEVCQLSSIEELFLYSNHLNGS-LPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLP---- 207 (716)
Q Consensus 133 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~---- 207 (716)
+|.++. +|.. .+++|++|+|++|.+++. .|..|+++++|++|++++|.+++.....+..+ .|+.|+++...
T Consensus 109 ~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 109 HNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIK 184 (562)
T ss_dssp TSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCC
T ss_pred CCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeeccccccc
Confidence 999984 5555 899999999999999974 46899999999999999999986333332222 22444433221
Q ss_pred ----cccCCCC-ccCEEEeeCCcCcccCCCcccc--ccccEEEccCCc-----CccccCccccCCCCccEEEecCCcccc
Q 041300 208 ----LSVGNLT-NLKSLGLMDNHLSGSIPPSFGN--SMLTWLTLSGNH-----FTGYLPHNICRGGLLEAFIVSENHFQG 275 (716)
Q Consensus 208 ----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~--~~L~~L~L~~n~-----l~~~~~~~~~~~~~L~~L~l~~n~l~~ 275 (716)
..+..+. ..-.+++++|.+.+.++..... ..|+.+++++|. +.+. ...+..++.++.+++.++.+.+
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcH
Confidence 1111111 0112334444444333322111 144455555442 1111 1123334444444444444332
Q ss_pred cC----CcccccCCCCcEEEccCCcCCCccchhh-----CCCCCCCEEEccCCccccccC-CCCC---CCCCCCEEEccc
Q 041300 276 TI----PESLRNCTSLIRVRLNGNNLTGNISEAL-----GLYPNLTFIDLSRNNFYGEIS-SNWG---KCPKLGTLNVSM 342 (716)
Q Consensus 276 ~~----p~~l~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~l~~~~~-~~~~---~l~~L~~L~L~~ 342 (716)
.. +.. ...++|++|++++|.+++.+|..+ ..++.|+.++++.|.+ .+| ..+. ...+|+.|++++
T Consensus 264 ~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 264 KCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp HHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccC
Confidence 11 111 112356666666666665555444 3334444444444443 112 1111 124577788887
Q ss_pred CcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCccccc--CCcccCCCCCCCEEEccCCcCCcc
Q 041300 343 NNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR--LPTEIGSLIELEYLDFSANKFNNS 420 (716)
Q Consensus 343 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~ 420 (716)
|.+.... ....+++|++|++++|++++..|..+..+++|+.|++++|++++. .|..+..+++|++|++++|.+++.
T Consensus 341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred CCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 7775332 125778888888888888877788888888888888888888753 345678888888888888888873
Q ss_pred Cc-hhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcC
Q 041300 421 VP-ESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEG 499 (716)
Q Consensus 421 ~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 499 (716)
+| ..+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+|+.+.+..|..
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 495 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence 44 4577788888888888888766655443 57888888888887 56666668888888888888888655455888
Q ss_pred CCCCCEEEccCCcccccCCC
Q 041300 500 MHGLSIIDISDNQLQGPVPN 519 (716)
Q Consensus 500 ~~~L~~l~ls~N~l~~~~p~ 519 (716)
+++|+.|++++|++.|.++.
T Consensus 496 l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CTTCCCEECCSCCBCCCHHH
T ss_pred CCCCCEEEecCCCcCCCcch
Confidence 88888888888888876553
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-41 Score=372.31 Aligned_cols=372 Identities=20% Similarity=0.170 Sum_probs=284.1
Q ss_pred CCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccC-CccccCCCCCCEEEcccccCccCCCccccCCCCCceee
Q 041300 76 PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKI-PAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELF 154 (716)
Q Consensus 76 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (716)
++|++|||++|.+.+..|..|.++++|++|+|++|.+.+.+ |..|..+++|++|+|++|.+++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 68999999999999888999999999999999999987444 66789999999999999999988899999999999999
Q ss_pred cccccccCCCCcc--ccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCC
Q 041300 155 LYSNHLNGSLPPF--LGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP 232 (716)
Q Consensus 155 L~~N~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 232 (716)
|++|.+++..|.. |.++++|++|+|++|.+++..+..+ +.++++|++|++++|.+.+..+.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF-----------------FLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG-----------------GGGCTTCCEEECTTCCBSCCCTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc-----------------cCCCCcccEEeCCCCcccccChh
Confidence 9999998755544 8889999999999998886554431 33445788888888888877776
Q ss_pred cccc---ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCC--
Q 041300 233 SFGN---SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGL-- 307 (716)
Q Consensus 233 ~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-- 307 (716)
.+.. ..++.|++++|.+.+..+..+.. .....+..+++|+.|++++|++++..+..+..
T Consensus 173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp TSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred hhhccccccccccccccCcccccchhhccc----------------cccccccccceeeeEecCCCcccccchhhhhccc
Confidence 6644 36777777777776544332210 00112234566777777777777666555433
Q ss_pred -CCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCccccc--CCCCCCEEEccCCccccccCcccCCCCCCc
Q 041300 308 -YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIG--NMSQLQALDLSLNHIVGEIPKELGKLNSLT 384 (716)
Q Consensus 308 -~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 384 (716)
.++|+.|++++|.+.+... ..+.+....+..+. ..++|++|++++|.+.+..|..+..+++|+
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 302 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE 302 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCC
Confidence 2677777777776553211 11122222222222 236788888888888888888888888888
Q ss_pred EEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCc
Q 041300 385 KLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNL 464 (716)
Q Consensus 385 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~ 464 (716)
.|++++|++++..|..+..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..+..+++|++|++++|+
T Consensus 303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 88888888888778888888889999999998888778888888999999999999988888888889999999999999
Q ss_pred CccccchhccCCCCCCEEECcCCcCcccCC
Q 041300 465 FGGEIPFQICSLKSLEKLNLSHNNLSGLIP 494 (716)
Q Consensus 465 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~ 494 (716)
+++..+..+..+++|+.|++++|++++..|
T Consensus 383 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 383 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 987777778889999999999999987765
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.8e-42 Score=383.44 Aligned_cols=429 Identities=20% Similarity=0.148 Sum_probs=343.2
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300 51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130 (716)
Q Consensus 51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 130 (716)
..++.|++++|.+.+ +.+.+|..+++|++|+|++|.+.++.|.+|.++++|++|+|++|.++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 579999999999984 44678999999999999999999999999999999999999999999 56655 899999999
Q ss_pred cccccCccC-CCccccCCCCCceeecccccccCCCCccccCCcCC--cEEEeecccc--cccccccccCCCCCce--eeC
Q 041300 131 FQFNELDGS-IPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNI--VRLYINNNSL--SGSILTNIGNLKFLFE--LDL 203 (716)
Q Consensus 131 L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~~L~~--L~l 203 (716)
|++|.+++. +|..|.++++|++|++++|.+++. .|..+++| +.|++++|.+ ++..+..+..+.. +. +++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l~l 203 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT-TVLHLVF 203 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-EEEEEEE
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCc-ceEEEEe
Confidence 999999974 468999999999999999999863 45556666 9999999999 8888888877652 22 233
Q ss_pred CC-------CCcccCCCCccCEEEeeCCcC-----cccCCCccccccccEEEccCCcCccccCcc---ccCCCCccEEEe
Q 041300 204 SF-------LPLSVGNLTNLKSLGLMDNHL-----SGSIPPSFGNSMLTWLTLSGNHFTGYLPHN---ICRGGLLEAFIV 268 (716)
Q Consensus 204 ~~-------~~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~~~~L~~L~l 268 (716)
+. ....+..+++|+.+++++|.. .+.++.......++.|+++++.+.+..... ......|+.|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 32 123456788999999999852 111111112235777777777665421111 112358999999
Q ss_pred cCCcccccCCccc-----ccCCCCcEEEccCCcCCCccchhhCC---CCCCCEEEccCCccccccCCCCCCCCCCCEEEc
Q 041300 269 SENHFQGTIPESL-----RNCTSLIRVRLNGNNLTGNISEALGL---YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV 340 (716)
Q Consensus 269 ~~n~l~~~~p~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 340 (716)
++|.+.+.+|..+ .+++.|+.+++..+.+ ..+...+.. ..+|++|++++|.+.... ....+++|++|++
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred eccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 9999999898887 7777777777777777 222222221 267999999999986432 1267899999999
Q ss_pred ccCcCcccCcccccCCCCCCEEEccCCccccc--cCcccCCCCCCcEEEccCCcccccCCc-ccCCCCCCCEEEccCCcC
Q 041300 341 SMNNITGGIPREIGNMSQLQALDLSLNHIVGE--IPKELGKLNSLTKLILRGNQLTGRLPT-EIGSLIELEYLDFSANKF 417 (716)
Q Consensus 341 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l 417 (716)
++|++++..|..+..+++|++|++++|++++. .|..+..+++|+.|++++|++++.+|. .+..+++|++|++++|.+
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 99999998999999999999999999999863 356789999999999999999984554 588999999999999999
Q ss_pred CccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccC
Q 041300 418 NNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLI 493 (716)
Q Consensus 418 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 493 (716)
++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|.+.+..
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 877766554 69999999999998 67777779999999999999999544444899999999999999998643
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.6e-41 Score=370.04 Aligned_cols=369 Identities=21% Similarity=0.194 Sum_probs=282.0
Q ss_pred CCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccC-CCccccCCCCCceeecccccccCCCCccccCCcCCcEEE
Q 041300 100 TKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGS-IPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLY 178 (716)
Q Consensus 100 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 178 (716)
++|++|+|++|.+++..|..|+.+++|++|+|++|.+.+. .+..|.++++|++|+|++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 7899999999999988899999999999999999998754 467799999999999999999999999999999999999
Q ss_pred eecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCc-ccc-ccccEEEccCCcCccccCcc
Q 041300 179 INNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS-FGN-SMLTWLTLSGNHFTGYLPHN 256 (716)
Q Consensus 179 L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~-~~L~~L~L~~n~l~~~~~~~ 256 (716)
+++|.+++..+.. ..+..+++|++|++++|.+.+..|.. +.. .+|++|++++|.+++
T Consensus 110 L~~n~l~~~~~~~----------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----- 168 (455)
T 3v47_A 110 LTQCNLDGAVLSG----------------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS----- 168 (455)
T ss_dssp CTTSCCBTHHHHS----------------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC-----
T ss_pred CCCCCCCccccCc----------------ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc-----
Confidence 9999988644332 11334457777888888777655543 222 244445544444444
Q ss_pred ccCCCCccEEEecCCcccccCCcccccC--CCCcEEEccCCcCCCccchh--------hCCCCCCCEEEccCCccccccC
Q 041300 257 ICRGGLLEAFIVSENHFQGTIPESLRNC--TSLIRVRLNGNNLTGNISEA--------LGLYPNLTFIDLSRNNFYGEIS 326 (716)
Q Consensus 257 ~~~~~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~l~~n~l~~~~~~~--------~~~~~~L~~L~Ls~n~l~~~~~ 326 (716)
..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+++..+
T Consensus 169 -------------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 169 -------------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229 (455)
T ss_dssp -------------------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred -------------------cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence 344444333 45555555555555433322 2234566666666666665554
Q ss_pred CCCCCC---CCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCC--CCCCcEEEccCCcccccCCccc
Q 041300 327 SNWGKC---PKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGK--LNSLTKLILRGNQLTGRLPTEI 401 (716)
Q Consensus 327 ~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~ 401 (716)
..+... ++|+.|++++|.+.+.. +..+.+.+..+..+.. .++|+.|++++|++++..|..+
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 295 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT
T ss_pred hhhhccccccceeeEeeccccccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchhhc
Confidence 443322 55666666666544321 1111222222222322 3689999999999999999999
Q ss_pred CCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCE
Q 041300 402 GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEK 481 (716)
Q Consensus 402 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 481 (716)
..+++|++|+|++|.+.+..|..|.++++|++|++++|++.+..|..+..+++|++|++++|++++..|..+..+++|++
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 99999999999999999988999999999999999999999888999999999999999999999988999999999999
Q ss_pred EECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCccc
Q 041300 482 LNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTA 522 (716)
Q Consensus 482 L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~ 522 (716)
|++++|++++..+..|..+++|+.|++++|++++.+|....
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred EECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence 99999999998888899999999999999999999886543
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.6e-40 Score=342.13 Aligned_cols=289 Identities=30% Similarity=0.558 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCCcc--eeeeeeCCC---CCEEEEEcCCCCCcc--ccCCCCCCC
Q 041300 2 NEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCA--WYGISCNDA---GRVTNISLRNTGLSG--TLRDFSFSS 74 (716)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~--w~gv~c~~~---~~v~~l~l~~~~l~~--~~~~~~f~~ 74 (716)
++|++||++||+++ .+|. .+.+|.... +||. |.||+|+.. ++|+.|+++++++.| .+ +..|..
T Consensus 5 ~~~~~aL~~~k~~~-~~~~-~l~~W~~~~-------~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~-~~~l~~ 74 (313)
T 1ogq_A 5 PQDKQALLQIKKDL-GNPT-TLSSWLPTT-------DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI-PSSLAN 74 (313)
T ss_dssp HHHHHHHHHHHHHT-TCCG-GGTTCCTTS-------CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC-CGGGGG
T ss_pred HHHHHHHHHHHHhc-CCcc-cccCCCCCC-------CCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc-ChhHhC
Confidence 68999999999999 4554 678896544 8998 999999853 688888888888776 55 346666
Q ss_pred CCCCcEEECCC-CCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCcee
Q 041300 75 FPQLVHLDLSL-NGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEEL 153 (716)
Q Consensus 75 l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (716)
+++|++|+|++ |.+.+.+|..|.++++|++|+|++|.+++.+|..|+.+++|++|+|++|.+.+.+|..|..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 77777777763 66666666666666667777766666666666666666666666666666666666666666666666
Q ss_pred ecccccccCCCCccccCCc-CCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCC
Q 041300 154 FLYSNHLNGSLPPFLGNLS-NIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP 232 (716)
Q Consensus 154 ~L~~N~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 232 (716)
+|++|.+++.+|..|..++ +|+.|++++|.+++.. |.
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~------------------------------------------~~ 192 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI------------------------------------------PP 192 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC------------------------------------------CG
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC------------------------------------------Ch
Confidence 6666666655565555554 5555555555554433 33
Q ss_pred ccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCC
Q 041300 233 SFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLT 312 (716)
Q Consensus 233 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 312 (716)
.+....|++|++++|.+++ ..|..+..+++|+.|++++|.+++.++. +..+++|+
T Consensus 193 ~~~~l~L~~L~Ls~N~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~ 247 (313)
T 1ogq_A 193 TFANLNLAFVDLSRNMLEG------------------------DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLN 247 (313)
T ss_dssp GGGGCCCSEEECCSSEEEE------------------------CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCC
T ss_pred HHhCCcccEEECcCCcccC------------------------cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCC
Confidence 3322223444444444433 3444455555666666666666554444 55566667
Q ss_pred EEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCc
Q 041300 313 FIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNH 368 (716)
Q Consensus 313 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 368 (716)
+|++++|.+++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.|++++|.
T Consensus 248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred EEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 7777777766666666666777777777777776666654 666777777777776
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.1e-39 Score=350.58 Aligned_cols=387 Identities=22% Similarity=0.251 Sum_probs=162.2
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCC-------------CEEECcCCcCcccCCc
Q 041300 52 RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKL-------------SYISLDSNQLSGKIPA 118 (716)
Q Consensus 52 ~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~N~l~~~~p~ 118 (716)
+++.++++++++ |.+ +.+|+.+++|++|++++|.+.+.+|..++++++| ++|++++|.+++ +|.
T Consensus 12 ~L~~L~l~~n~l-~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred cchhhhcccCch-hhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 455566666665 455 3345666666666666666666666666655543 555666555553 222
Q ss_pred cccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCC
Q 041300 119 EVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFL 198 (716)
Q Consensus 119 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 198 (716)
. .++|++|++++|.+++ +|.. +++|++|++++|.+++.. .. .++|++|++++|.+++ +|
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~-~~---~~~L~~L~L~~n~l~~-lp--------- 147 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS-DL---PPLLEYLGVSNNQLEK-LP--------- 147 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC-SC---CTTCCEEECCSSCCSS-CC---------
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc-CC---CCCCCEEECcCCCCCC-Cc---------
Confidence 1 2455555665555554 3322 245555555555555321 11 1455555555555543 21
Q ss_pred ceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCC
Q 041300 199 FELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIP 278 (716)
Q Consensus 199 ~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (716)
.+.++++|++|++++|.+++ +|... ..|++|++++|.+++ +| .+..++.|+.|++++|.+++ +|
T Consensus 148 ----------~~~~l~~L~~L~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~ 211 (454)
T 1jl5_A 148 ----------ELQNSSFLKIIDVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LP 211 (454)
T ss_dssp ----------CCTTCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred ----------ccCCCCCCCEEECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CC
Confidence 12334455666666666554 33322 245566666665554 23 35555555555555555553 22
Q ss_pred cccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCC
Q 041300 279 ESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQ 358 (716)
Q Consensus 279 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 358 (716)
... ++|+.|++++|.++. +| .+..+++|++|++++|++++. |. .+++|+.|++++|++++ +|.. +++
T Consensus 212 ~~~---~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~ 278 (454)
T 1jl5_A 212 DLP---LSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQS 278 (454)
T ss_dssp CCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred CCc---CcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCc
Confidence 211 355555555555552 22 245555555555555555542 21 12455555555555553 2221 245
Q ss_pred CCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcC
Q 041300 359 LQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSN 438 (716)
Q Consensus 359 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 438 (716)
|+.|++++|++++. |.. .++|+.|++++|++++. +. ..++|+.|++++|++++ +|.. +++|++|++++
T Consensus 279 L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~ 346 (454)
T 1jl5_A 279 LTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASF 346 (454)
T ss_dssp CCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred CCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCC
Confidence 55555555555531 111 13455555555555431 11 01345555555555553 3322 34555555555
Q ss_pred CcCcccCChhhhCCCCCCEEECCCCcCcc--ccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccc-
Q 041300 439 NQFVLELPKELEKLVQLSELDASHNLFGG--EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG- 515 (716)
Q Consensus 439 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~- 515 (716)
|+++. +|. .+++|++|++++|++++ .+|..+.. ++.|++.+.+|.. +++|+.||+++|++++
T Consensus 347 N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 347 NHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREF 411 (454)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC----------------------------
T ss_pred Ccccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCcc
Confidence 55552 333 24455555555555554 33333221 1223333333331 2678888888888887
Q ss_pred -cCC
Q 041300 516 -PVP 518 (716)
Q Consensus 516 -~~p 518 (716)
.+|
T Consensus 412 ~~iP 415 (454)
T 1jl5_A 412 PDIP 415 (454)
T ss_dssp ----
T ss_pred ccch
Confidence 444
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.5e-39 Score=347.61 Aligned_cols=384 Identities=24% Similarity=0.276 Sum_probs=237.6
Q ss_pred CCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCC-------------CEEEcccccCccCC
Q 041300 74 SFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHL-------------KVLSFQFNELDGSI 140 (716)
Q Consensus 74 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------------~~L~L~~N~l~~~~ 140 (716)
..+.|++|++++|.+ +.+|.+|+++++|++|++++|.+.+.+|..++.+++| ++|++++|.+++.
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l- 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL- 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-
Confidence 357899999999999 7889899999999999999999999999999988865 8888888887753
Q ss_pred CccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEE
Q 041300 141 PPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLG 220 (716)
Q Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~ 220 (716)
|.. .++|++|++++|.+++ +|.. +++|++|++++|.+++.. .+ .++|++|+
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~-----~~-----------------~~~L~~L~ 137 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS-----DL-----------------PPLLEYLG 137 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC-----SC-----------------CTTCCEEE
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc-----CC-----------------CCCCCEEE
Confidence 331 3678888888888876 4543 367888888888776311 00 14788888
Q ss_pred eeCCcCcccCCCcccc-ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCC
Q 041300 221 LMDNHLSGSIPPSFGN-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTG 299 (716)
Q Consensus 221 l~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 299 (716)
+++|.+++ +|. +.. .+|++|++++|.+++ +|.. ...|+.|++++|++++ +| .+.++++|+.|++++|++++
T Consensus 138 L~~n~l~~-lp~-~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 138 VSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CCSSCCSS-CCC-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CcCCCCCC-Ccc-cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 88888886 554 443 478888888888876 3433 2478888888888876 45 57888888888888888876
Q ss_pred ccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCC
Q 041300 300 NISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGK 379 (716)
Q Consensus 300 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 379 (716)
.. .. .++|++|++++|.++ .+| .+..+++|++|++++|++++ +|. .+++|++|++++|++++ +|..
T Consensus 210 l~-~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~--- 275 (454)
T 1jl5_A 210 LP-DL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL--- 275 (454)
T ss_dssp CC-CC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---
T ss_pred CC-CC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---
Confidence 32 21 257888888888887 444 37788888888888888875 333 24778888888888875 4443
Q ss_pred CCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCc-CCCCEEECcCCcCcccCChhhhCCCCCCEE
Q 041300 380 LNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNL-LKLHYLGLSNNQFVLELPKELEKLVQLSEL 458 (716)
Q Consensus 380 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 458 (716)
+++|+.|++++|++++. |.. .++|+.|++++|.+++. + .+ ++|++|++++|++++ +|.. +++|++|
T Consensus 276 ~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L 342 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERL 342 (454)
T ss_dssp CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence 36788888888888752 211 25788888888888752 2 22 478888888888875 4443 4678888
Q ss_pred ECCCCcCccccchhccCCCCCCEEECcCCcCcc--cCCcCCcCCCCCCEEEccCCcccccCCCccccCCCCcccccCCCC
Q 041300 459 DASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG--LIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKE 536 (716)
Q Consensus 459 ~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~--~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~ 536 (716)
++++|++++ +|. .+++|+.|++++|++++ .+|..+. +++.|.+.+.+|.. ........+.+|+.
T Consensus 343 ~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~--------~L~~n~~~~~i~~~--~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 343 IASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVE--------DLRMNSHLAEVPEL--PQNLKQLHVETNPL 408 (454)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCC--------EEECCC------------------------
T ss_pred ECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHH--------hhhhcccccccccc--cCcCCEEECCCCcC
Confidence 888888874 554 46788888888888877 4555443 23456666666642 23444555566654
Q ss_pred C
Q 041300 537 L 537 (716)
Q Consensus 537 ~ 537 (716)
.
T Consensus 409 ~ 409 (454)
T 1jl5_A 409 R 409 (454)
T ss_dssp -
T ss_pred C
Confidence 3
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=343.03 Aligned_cols=238 Identities=18% Similarity=0.165 Sum_probs=160.3
Q ss_pred hhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCC
Q 041300 304 ALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSL 383 (716)
Q Consensus 304 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 383 (716)
.|..+++|++|++++|.+.+..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|
T Consensus 123 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 202 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202 (477)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTC
T ss_pred HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccc
Confidence 33444455555555555555555555566666666666666665555566666777777777777766666666677777
Q ss_pred cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCC
Q 041300 384 TKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHN 463 (716)
Q Consensus 384 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N 463 (716)
+.|++++|.+.+.+|.......+|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred ceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence 77777777666666665555667777777777777555566777777888888888777766777777778888888888
Q ss_pred cCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCccccCCCCcccccCCCCCCCCC
Q 041300 464 LFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV 541 (716)
Q Consensus 464 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 541 (716)
++++..|..|..+++|+.|++++|+|++..+..|..+++|+.|++++|++.+..+....+.......+.++...|..+
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 887777777888888888888888888777777777888888888888887655433222222223345556666543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.1e-37 Score=337.01 Aligned_cols=345 Identities=27% Similarity=0.393 Sum_probs=188.1
Q ss_pred CCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceee
Q 041300 75 FPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELF 154 (716)
Q Consensus 75 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (716)
+++++.|++++|.+.. +| .+..+++|++|+|++|.+++..| ++.+++|++|++++|.+.+..+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 4456666666666543 22 25556666666666666654332 5666666666666666654433 66666666666
Q ss_pred cccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCcc
Q 041300 155 LYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSF 234 (716)
Q Consensus 155 L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 234 (716)
+++|.+++..+ |.++++|++|++++|.+++.. .+. .+++|++|+++ |.+.+. ++..
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~------------------~l~~L~~L~l~-~~~~~~-~~~~ 174 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALS------------------GLTSLQQLSFG-NQVTDL-KPLA 174 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGT------------------TCTTCSEEEEE-ESCCCC-GGGT
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhc------------------cCCcccEeecC-CcccCc-hhhc
Confidence 66666654432 566666666666666655311 122 23344444443 222211 1111
Q ss_pred ccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEE
Q 041300 235 GNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFI 314 (716)
Q Consensus 235 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 314 (716)
....|++|++++|.+++ . ..+..+++|+.|++++|.+++..+ ++.+++|++|
T Consensus 175 ~l~~L~~L~l~~n~l~~------------------------~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 226 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSD------------------------I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226 (466)
T ss_dssp TCTTCCEEECCSSCCCC------------------------C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred cCCCCCEEECcCCcCCC------------------------C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEE
Confidence 11133333333333322 1 123444555555555555554433 3445555555
Q ss_pred EccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCccc
Q 041300 315 DLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLT 394 (716)
Q Consensus 315 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 394 (716)
++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 227 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 227 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300 (466)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS
T ss_pred ECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc
Confidence 5555555442 234555566666666666654433 5556666666666666654332 556666666666666665
Q ss_pred ccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhcc
Q 041300 395 GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQIC 474 (716)
Q Consensus 395 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~ 474 (716)
+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +.
T Consensus 301 ~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 372 (466)
T 1o6v_A 301 DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LA 372 (466)
T ss_dssp CCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GT
T ss_pred Cchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hh
Confidence 4332 5566666666666666665444 55666666666666666643 356666666777777776666555 56
Q ss_pred CCCCCCEEECcCCcCcc
Q 041300 475 SLKSLEKLNLSHNNLSG 491 (716)
Q Consensus 475 ~l~~L~~L~ls~N~l~~ 491 (716)
.+++|+.|++++|++++
T Consensus 373 ~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 373 NLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCTTCCEEECCCEEEEC
T ss_pred cCCCCCEEeccCCcccC
Confidence 66677777777776665
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.1e-37 Score=334.27 Aligned_cols=349 Identities=25% Similarity=0.366 Sum_probs=291.4
Q ss_pred cCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcE
Q 041300 97 GNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVR 176 (716)
Q Consensus 97 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 176 (716)
..+++|+.|++++|.+.. +| .+..+++|++|+|++|.+.+..+ +..+++|++|++++|.+++..+ |.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 346789999999999984 55 37889999999999999986544 8999999999999999987655 889999999
Q ss_pred EEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCcc
Q 041300 177 LYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHN 256 (716)
Q Consensus 177 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 256 (716)
|++++|.+++..+ +.++++|++|++++|.+.+. + .
T Consensus 117 L~L~~n~l~~~~~--------------------~~~l~~L~~L~l~~n~l~~~-~------------------------~ 151 (466)
T 1o6v_A 117 LTLFNNQITDIDP--------------------LKNLTNLNRLELSSNTISDI-S------------------------A 151 (466)
T ss_dssp EECCSSCCCCCGG--------------------GTTCTTCSEEEEEEEEECCC-G------------------------G
T ss_pred EECCCCCCCCChH--------------------HcCCCCCCEEECCCCccCCC-h------------------------h
Confidence 9999998775321 33455777888877776632 1 2
Q ss_pred ccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCC
Q 041300 257 ICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLG 336 (716)
Q Consensus 257 ~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 336 (716)
+..++.|+.|+++ |.+.+.. .+.++++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+ +..+++|+
T Consensus 152 ~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 224 (466)
T 1o6v_A 152 LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLD 224 (466)
T ss_dssp GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCC
T ss_pred hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCC
Confidence 3445566666664 3444332 378899999999999999875 347889999999999999988765 77899999
Q ss_pred EEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCc
Q 041300 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANK 416 (716)
Q Consensus 337 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 416 (716)
.|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|.
T Consensus 225 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 225 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 298 (466)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred EEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCc
Confidence 999999999864 468899999999999999986554 8899999999999999996544 8899999999999999
Q ss_pred CCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcC
Q 041300 417 FNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNC 496 (716)
Q Consensus 417 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~ 496 (716)
+.+..+ +..+++|+.|++++|++++..| +..+++|++|++++|.+++. ..+..+++|+.|++++|++++..|
T Consensus 299 l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 370 (466)
T 1o6v_A 299 LEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-- 370 (466)
T ss_dssp CSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--
T ss_pred ccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--
Confidence 997654 8899999999999999997655 78899999999999999975 468899999999999999999887
Q ss_pred CcCCCCCCEEEccCCcccccC
Q 041300 497 FEGMHGLSIIDISDNQLQGPV 517 (716)
Q Consensus 497 ~~~~~~L~~l~ls~N~l~~~~ 517 (716)
+..+++|+.|++++|++++.+
T Consensus 371 ~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 371 LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp GTTCTTCCEEECCCEEEECCC
T ss_pred hhcCCCCCEEeccCCcccCCc
Confidence 889999999999999999853
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5e-37 Score=333.56 Aligned_cols=358 Identities=22% Similarity=0.183 Sum_probs=261.6
Q ss_pred CCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCC
Q 041300 70 FSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSS 149 (716)
Q Consensus 70 ~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (716)
.++..+++|++||+++|.+.+. | .|..+++|++|+|++|.+++. | ++.+++|++|++++|.+++. + +.++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 3567789999999999999875 4 689999999999999999864 4 88999999999999999875 3 889999
Q ss_pred CceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCccc
Q 041300 150 IEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGS 229 (716)
Q Consensus 150 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 229 (716)
|++|++++|.+++. | ++.+++|++|++++|.+++. . +..+++|++|++++|...+.
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~------------------l~~l~~L~~L~l~~n~~~~~ 163 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---D------------------VSHNTQLTELDCHLNKKITK 163 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---C------------------CTTCTTCCEEECTTCSCCCC
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---c------------------cccCCcCCEEECCCCCcccc
Confidence 99999999999874 3 88899999999999988752 1 23445788888888855444
Q ss_pred CCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCC
Q 041300 230 IPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYP 309 (716)
Q Consensus 230 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 309 (716)
++ ......|++|++++|.+++. | +..++.|+.|++++|++++. .+..+++|+.|++++|++++. | +..++
T Consensus 164 ~~-~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~ 233 (457)
T 3bz5_A 164 LD-VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLT 233 (457)
T ss_dssp CC-CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred cc-cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccC
Confidence 42 22234677888888777763 2 55666777777777777654 366667777777777777663 3 55666
Q ss_pred CCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEcc
Q 041300 310 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 389 (716)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 389 (716)
+|+.|++++|++++.. +..+++|+.|+++.| +|+.|++++|.+.+.+| +..+++|+.|+++
T Consensus 234 ~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVT 294 (457)
T ss_dssp TCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCT
T ss_pred CCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECC
Confidence 7777777777776543 334566666666544 35566777777666555 4567778888888
Q ss_pred CCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcccc
Q 041300 390 GNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEI 469 (716)
Q Consensus 390 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 469 (716)
+|...+.+|. ...+|+.|++++| ++|++|++++|++++. + +..+++|+.|++++|++++
T Consensus 295 ~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-- 353 (457)
T 3bz5_A 295 HNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-- 353 (457)
T ss_dssp TCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--
T ss_pred CCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--
Confidence 8876666653 3345555555544 6788899999988873 3 7788889999999998875
Q ss_pred chhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCc
Q 041300 470 PFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS 520 (716)
Q Consensus 470 p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~ 520 (716)
++.|+.|++++|+++|. ..+..|..+++++|+++|.+|..
T Consensus 354 ------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 354 ------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp ------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 35667778888888876 23456778899999999988753
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.1e-37 Score=333.48 Aligned_cols=354 Identities=20% Similarity=0.192 Sum_probs=294.8
Q ss_pred CCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 041300 51 GRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLS 130 (716)
Q Consensus 51 ~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 130 (716)
.+++.|+++++++.+ + ..|..+++|++|+|++|.+.+. | ++.+++|++|++++|.+++. | ++.+++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~-~--~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD-M--TGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCC-C--TTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred CCCCEEEccCCCccc-C--hhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 478999999999986 3 2689999999999999999875 3 89999999999999999975 3 89999999999
Q ss_pred cccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCccc
Q 041300 131 FQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSV 210 (716)
Q Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 210 (716)
+++|.+++. | +..+++|++|++++|.+++. .++++++|+.|++++|...+.+ .+
T Consensus 113 L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--------------------~~ 166 (457)
T 3bz5_A 113 CDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--------------------DV 166 (457)
T ss_dssp CCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--------------------CC
T ss_pred CCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--------------------cc
Confidence 999999974 4 89999999999999999975 3889999999999999644322 23
Q ss_pred CCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEE
Q 041300 211 GNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRV 290 (716)
Q Consensus 211 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 290 (716)
..+++|++|++++|.+++. | ......|+.|++++|.+++. .+..++.|+.|++++|++++ +| +..+++|+.|
T Consensus 167 ~~l~~L~~L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L 238 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITEL-D-VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF 238 (457)
T ss_dssp TTCTTCCEEECCSSCCCCC-C-CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred ccCCcCCEEECCCCcccee-c-cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence 4566899999999999874 4 33345899999999999986 37788999999999999998 45 8899999999
Q ss_pred EccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccc
Q 041300 291 RLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIV 370 (716)
Q Consensus 291 ~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 370 (716)
++++|++++.. +..+++|+.|+++.| +|+.|++++|.+.+.+| ++.+++|+.|++++|...
T Consensus 239 ~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 239 DCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp ECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred EeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence 99999999875 456789999998876 45678889998887776 568899999999999987
Q ss_pred cccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhh
Q 041300 371 GEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELE 450 (716)
Q Consensus 371 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 450 (716)
+.+|. ..++|+.|++++| ++|+.|++++|++++. + +..+++|+.|++++|++++
T Consensus 300 ~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~------- 353 (457)
T 3bz5_A 300 YLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD------- 353 (457)
T ss_dssp CEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-------
T ss_pred ceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-------
Confidence 77764 3455666665554 6889999999999874 3 8889999999999999885
Q ss_pred CCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCc
Q 041300 451 KLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFE 498 (716)
Q Consensus 451 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 498 (716)
++.|..|++++|.+.|. ..+..|+.+++++|+++|.+|..+.
T Consensus 354 -l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 354 -FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp -CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred -ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 34567778999999875 2456788899999999999887554
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=333.20 Aligned_cols=300 Identities=20% Similarity=0.165 Sum_probs=201.7
Q ss_pred CCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeec
Q 041300 76 PQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFL 155 (716)
Q Consensus 76 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (716)
+.+++|||++|.+.+..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.++...+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 58999999999999998999999999999999999999888999999999999999999999777778899999999999
Q ss_pred ccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccc
Q 041300 156 YSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFG 235 (716)
Q Consensus 156 ~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 235 (716)
++|.+++..|..|.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------~l~~L~~L~l~~n~l~~~~~~~l~ 173 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS------------------GLNSLEQLTLEKCNLTSIPTEALS 173 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST------------------TCTTCCEEEEESCCCSSCCHHHHT
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhcc------------------CCCCCCEEECCCCcCcccChhHhc
Confidence 99999999899999999999999999998865554444 444788888888887754444343
Q ss_pred c-ccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEE
Q 041300 236 N-SMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFI 314 (716)
Q Consensus 236 ~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 314 (716)
. ..|+.|++++|.+.+..+..+..++.|+.|++++|.+.+.+|.......+|+.|++++|+++...+..+..+++|++|
T Consensus 174 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253 (477)
T ss_dssp TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE
T ss_pred ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCee
Confidence 3 256666666666665555555555555555555555544444444444455555555555554444445555555555
Q ss_pred EccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcc
Q 041300 315 DLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQL 393 (716)
Q Consensus 315 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 393 (716)
+|++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 5555555544444444444455555444444444444444444444444444444433333344444444444444444
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-35 Score=314.35 Aligned_cols=311 Identities=20% Similarity=0.199 Sum_probs=194.7
Q ss_pred CCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCcee
Q 041300 74 SFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEEL 153 (716)
Q Consensus 74 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (716)
.+++++.|++++|.+..+.+..|..+++|++|+|++|.+++..+..|+.+++|++|+|++|.+.+..|..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46789999999999887777778889999999999999988777889999999999999999988888888889999999
Q ss_pred ecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCc
Q 041300 154 FLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS 233 (716)
Q Consensus 154 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 233 (716)
+|++|.++...+..|.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------------~l~~L~~L~l~~n~l~~~~--- 181 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ------------------ATTSLQNLQLSSNRLTHVD--- 181 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS------------------SCTTCCEEECCSSCCSBCC---
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc------------------CCCCCCEEECCCCcCCccc---
Confidence 9999988866666678888888888888877654433333 3335556666555554210
Q ss_pred cccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCE
Q 041300 234 FGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTF 313 (716)
Q Consensus 234 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 313 (716)
+..+++|+.|++++|.+++. ...++|++
T Consensus 182 -----------------------------------------------~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~ 209 (390)
T 3o6n_A 182 -----------------------------------------------LSLIPSLFHANVSYNLLSTL-----AIPIAVEE 209 (390)
T ss_dssp -----------------------------------------------GGGCTTCSEEECCSSCCSEE-----ECCSSCSE
T ss_pred -----------------------------------------------cccccccceeeccccccccc-----CCCCcceE
Confidence 12233444444444444321 12235555
Q ss_pred EEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcc
Q 041300 314 IDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQL 393 (716)
Q Consensus 314 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 393 (716)
|++++|.+...... ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|+.|++++|++
T Consensus 210 L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 210 LDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284 (390)
T ss_dssp EECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred EECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence 66666555543221 124556666666665532 3455556666666666666555555555555555555555555
Q ss_pred cccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhc
Q 041300 394 TGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQI 473 (716)
Q Consensus 394 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~ 473 (716)
++ +|..+..+++|++|+|++|.+. .+|..+..+++|++|++++|.++.. + +
T Consensus 285 ~~-~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~l~~L~~L~L~~N~i~~~-~--~ 335 (390)
T 3o6n_A 285 VA-LNLYGQPIPTLKVLDLSHNHLL-------------------------HVERNQPQFDRLENLYLDHNSIVTL-K--L 335 (390)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCC-------------------------CCGGGHHHHTTCSEEECCSSCCCCC-C--C
T ss_pred cc-cCcccCCCCCCCEEECCCCcce-------------------------ecCccccccCcCCEEECCCCcccee-C--c
Confidence 53 3333444455555555555554 2333344444455555555554432 1 3
Q ss_pred cCCCCCCEEECcCCcCcc
Q 041300 474 CSLKSLEKLNLSHNNLSG 491 (716)
Q Consensus 474 ~~l~~L~~L~ls~N~l~~ 491 (716)
..+++|+.|++++|+++.
T Consensus 336 ~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 336 STHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CTTCCCSEEECCSSCEEH
T ss_pred hhhccCCEEEcCCCCccc
Confidence 445666666666666654
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.4e-35 Score=330.68 Aligned_cols=289 Identities=20% Similarity=0.187 Sum_probs=187.1
Q ss_pred CCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCcee
Q 041300 74 SFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEEL 153 (716)
Q Consensus 74 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (716)
.+++++.|++++|.+..+.+..|.++++|++|+|++|.+.+..|..|+.+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788999999999988777778889999999999999998888889999999999999999998888888899999999
Q ss_pred ecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCc
Q 041300 154 FLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS 233 (716)
Q Consensus 154 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 233 (716)
+|++|.+++..+..|+++++|++|+|++|.+++..+..+.. +++|++|++++|.+++..
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------l~~L~~L~L~~N~l~~~~--- 187 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA------------------TTSLQNLQLSSNRLTHVD--- 187 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT------------------CTTCCEEECTTSCCSBCC---
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc------------------CCcCcEEECcCCCCCCcC---
Confidence 99999988777777788888888888888877554444433 335556666555554321
Q ss_pred cccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCE
Q 041300 234 FGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTF 313 (716)
Q Consensus 234 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 313 (716)
+..+++|+.|++++|.+++. ...++|+.
T Consensus 188 -----------------------------------------------~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~ 215 (597)
T 3oja_B 188 -----------------------------------------------LSLIPSLFHANVSYNLLSTL-----AIPIAVEE 215 (597)
T ss_dssp -----------------------------------------------GGGCTTCSEEECCSSCCSEE-----ECCTTCSE
T ss_pred -----------------------------------------------hhhhhhhhhhhcccCccccc-----cCCchhhe
Confidence 11233444444444444321 12335556
Q ss_pred EEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcc
Q 041300 314 IDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQL 393 (716)
Q Consensus 314 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 393 (716)
|++++|.+....+.. .++|+.|+|++|.+++ +..+..+++|+.|++++|.+++..|..|..+++|+.|+|++|++
T Consensus 216 L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 216 LDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp EECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred eeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 666666555433221 1456666666666654 24455566666666666666655555566666666666666665
Q ss_pred cccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCc
Q 041300 394 TGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFV 442 (716)
Q Consensus 394 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 442 (716)
++ +|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++
T Consensus 291 ~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 291 VA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred CC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 53 3444444555555555555554 33444444445555555554443
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.6e-35 Score=311.21 Aligned_cols=335 Identities=22% Similarity=0.227 Sum_probs=235.5
Q ss_pred CCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEE
Q 041300 98 NLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRL 177 (716)
Q Consensus 98 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 177 (716)
.+.+|++|++++|.+....+..|..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 36789999999999986666668889999999999999988777888888889999998888888777778777777777
Q ss_pred EeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccc
Q 041300 178 YINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNI 257 (716)
Q Consensus 178 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 257 (716)
++++|.++...+..+ .++++|++|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~------------------~~l~~L~~L~L~~n~l------------------------------- 153 (390)
T 3o6n_A 123 VLERNDLSSLPRGIF------------------HNTPKLTTLSMSNNNL------------------------------- 153 (390)
T ss_dssp ECCSSCCCCCCTTTT------------------TTCTTCCEEECCSSCC-------------------------------
T ss_pred ECCCCccCcCCHHHh------------------cCCCCCcEEECCCCcc-------------------------------
Confidence 777776652111111 1222333333333322
Q ss_pred cCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCE
Q 041300 258 CRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGT 337 (716)
Q Consensus 258 ~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 337 (716)
.+..|..+.++++|+.|++++|++++.. +..+++|+.
T Consensus 154 ----------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------------~~~l~~L~~ 190 (390)
T 3o6n_A 154 ----------------ERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------------LSLIPSLFH 190 (390)
T ss_dssp ----------------CBCCTTTTSSCTTCCEEECCSSCCSBCC---------------------------GGGCTTCSE
T ss_pred ----------------CccChhhccCCCCCCEEECCCCcCCccc---------------------------cccccccce
Confidence 2233334445556666666666555431 233344555
Q ss_pred EEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 041300 338 LNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKF 417 (716)
Q Consensus 338 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 417 (716)
|++++|.+++. ...++|+.|++++|.+... |.. ..++|+.|++++|++++. ..+..+++|++|++++|.+
T Consensus 191 L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 191 ANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp EECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred eeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcC
Confidence 55555544421 2234566677777766643 222 236788888888888753 5677888889999999988
Q ss_pred CccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCC
Q 041300 418 NNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCF 497 (716)
Q Consensus 418 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~ 497 (716)
.+..|..|..+++|+.|++++|++++ +|..+..+++|++|++++|++. .+|..+..+++|+.|++++|+++... +
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~ 335 (390)
T 3o6n_A 261 EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---L 335 (390)
T ss_dssp CEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---C
T ss_pred CCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---c
Confidence 88888888889999999999999885 5666678899999999999998 56777888999999999999998763 6
Q ss_pred cCCCCCCEEEccCCcccccCCCccccCCCCcccccCCCCCCCC
Q 041300 498 EGMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGG 540 (716)
Q Consensus 498 ~~~~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~ 540 (716)
..+++|+.|++++|++.+... ...+.......+.+++..|..
T Consensus 336 ~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 336 STHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCT
T ss_pred hhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceecc
Confidence 778999999999999987432 223444444455666667754
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-34 Score=326.96 Aligned_cols=335 Identities=22% Similarity=0.228 Sum_probs=222.7
Q ss_pred CCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEE
Q 041300 99 LTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLY 178 (716)
Q Consensus 99 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 178 (716)
+.+++.|++++|.+...++..|+.+++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 67889999999999877777788899999999999999988888888999999999999988888887788888777777
Q ss_pred eecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCcccc
Q 041300 179 INNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNIC 258 (716)
Q Consensus 179 L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 258 (716)
|++|.+++..+..| .++++|++|++++|.
T Consensus 130 L~~n~l~~l~~~~~------------------~~l~~L~~L~Ls~N~--------------------------------- 158 (597)
T 3oja_B 130 LERNDLSSLPRGIF------------------HNTPKLTTLSMSNNN--------------------------------- 158 (597)
T ss_dssp CCSSCCCCCCTTTT------------------TTCTTCCEEECCSSC---------------------------------
T ss_pred eeCCCCCCCCHHHh------------------ccCCCCCEEEeeCCc---------------------------------
Confidence 77776653222111 122233333333332
Q ss_pred CCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEE
Q 041300 259 RGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL 338 (716)
Q Consensus 259 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 338 (716)
+.+..|..|.++++|+.|++++|.+++.. +..+++|+.|++++|.+.+.
T Consensus 159 --------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-------------- 207 (597)
T 3oja_B 159 --------------LERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-------------- 207 (597)
T ss_dssp --------------CCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE--------------
T ss_pred --------------CCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc--------------
Confidence 22333444555666666666666666542 23345555555555554432
Q ss_pred EcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 041300 339 NVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFN 418 (716)
Q Consensus 339 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 418 (716)
....+|+.|++++|.+....+.. .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+.
T Consensus 208 ---------------~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 208 ---------------AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp ---------------ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred ---------------cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence 22234555555555554322211 2456666666666664 245666777777777777777
Q ss_pred ccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCc
Q 041300 419 NSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFE 498 (716)
Q Consensus 419 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 498 (716)
+..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++.. +.
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~ 342 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LS 342 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CC
T ss_pred CCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hh
Confidence 6667777777777777777777764 4555566777888888888877 46666777788888888888887653 56
Q ss_pred CCCCCCEEEccCCcccccCCCccccCCCCcccccCCCCCCCCC
Q 041300 499 GMHGLSIIDISDNQLQGPVPNSTAFRNAPVEALEGNKELCGGV 541 (716)
Q Consensus 499 ~~~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 541 (716)
.+++|+.|++++|++.|... ...+.......+.++...|+..
T Consensus 343 ~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 343 THHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp TTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred hcCCCCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence 67788899999999887532 2334445555567777788653
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.8e-33 Score=296.17 Aligned_cols=103 Identities=23% Similarity=0.383 Sum_probs=59.3
Q ss_pred CCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCc
Q 041300 72 FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIE 151 (716)
Q Consensus 72 f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (716)
+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.++.. +.+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 34566677777777776543 2 36667777777777777664322 66666666666666666532 2455556666
Q ss_pred eeecccccccCCCCccccCCcCCcEEEeecc
Q 041300 152 ELFLYSNHLNGSLPPFLGNLSNIVRLYINNN 182 (716)
Q Consensus 152 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n 182 (716)
+|++++|.+++..+ +..+++|++|++++|
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGAN 142 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCC
Confidence 66666655553322 444444444444444
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.8e-33 Score=294.65 Aligned_cols=307 Identities=24% Similarity=0.370 Sum_probs=163.0
Q ss_pred ccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCc
Q 041300 96 IGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIV 175 (716)
Q Consensus 96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 175 (716)
+..+++|++|++++|.+.. +| .+..+++|++|++++|.++...+ +..+++|++|++++|.++.. +.|.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 4567777788887777763 33 36677777777777777764332 66677777777777766542 2455555666
Q ss_pred EEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCc
Q 041300 176 RLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPH 255 (716)
Q Consensus 176 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 255 (716)
+|++++|.+++..+ +..+++|++|++++|..
T Consensus 114 ~L~l~~n~i~~~~~--------------------~~~l~~L~~L~l~~n~~----------------------------- 144 (347)
T 4fmz_A 114 ELYLNEDNISDISP--------------------LANLTKMYSLNLGANHN----------------------------- 144 (347)
T ss_dssp EEECTTSCCCCCGG--------------------GTTCTTCCEEECTTCTT-----------------------------
T ss_pred EEECcCCcccCchh--------------------hccCCceeEEECCCCCC-----------------------------
Confidence 66555555442111 11222333333333321
Q ss_pred cccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCC
Q 041300 256 NICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKL 335 (716)
Q Consensus 256 ~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 335 (716)
...+ ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|
T Consensus 145 ------------------~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 201 (347)
T 4fmz_A 145 ------------------LSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSL 201 (347)
T ss_dssp ------------------CCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTC
T ss_pred ------------------cccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCcc
Confidence 1111 124556666666666666664433 4555566666666655554322 4445555
Q ss_pred CEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 041300 336 GTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSAN 415 (716)
Q Consensus 336 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 415 (716)
+.|++++|.+++..+ +..+++|++|++++|.+ ++..+ +..+++|++|++++|
T Consensus 202 ~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l------------------------~~~~~--~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKI------------------------TDLSP--LANLSQLTWLEIGTN 253 (347)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC------------------------CCCGG--GTTCTTCCEEECCSS
T ss_pred ceeecccCCCCCCch--hhcCCcCCEEEccCCcc------------------------CCCcc--hhcCCCCCEEECCCC
Confidence 555555555543322 44444555555555544 43221 444555555555555
Q ss_pred cCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCc
Q 041300 416 KFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPN 495 (716)
Q Consensus 416 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~ 495 (716)
.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|
T Consensus 254 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~- 328 (347)
T 4fmz_A 254 QISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP- 328 (347)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-
T ss_pred ccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-
Confidence 55432 2344555555555555555432 235555556666666666555555555566666666666666655544
Q ss_pred CCcCCCCCCEEEccCCccc
Q 041300 496 CFEGMHGLSIIDISDNQLQ 514 (716)
Q Consensus 496 ~~~~~~~L~~l~ls~N~l~ 514 (716)
+..+++|+.||+++|+++
T Consensus 329 -~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 -LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -GGGCTTCSEESSSCC---
T ss_pred -hhhhhccceeehhhhccc
Confidence 555666666666666553
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.3e-34 Score=294.18 Aligned_cols=256 Identities=25% Similarity=0.429 Sum_probs=202.7
Q ss_pred CCCcEEEccCCcCCC--ccchhhCCCCCCCEEEccC-CccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCE
Q 041300 285 TSLIRVRLNGNNLTG--NISEALGLYPNLTFIDLSR-NNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQA 361 (716)
Q Consensus 285 ~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 361 (716)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 356677777777776 6666777777777777773 7777777777777777777777777777777777777888888
Q ss_pred EEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCC-CCCEEEccCCcCCccCchhhcCcCCCCEEECcCCc
Q 041300 362 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLI-ELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQ 440 (716)
Q Consensus 362 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 440 (716)
|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+++..|..+..+. |+.|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888888777777777888888888888888777777777777 788888888888777787777776 8888888888
Q ss_pred CcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCc
Q 041300 441 FVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS 520 (716)
Q Consensus 441 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~ 520 (716)
+++..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..|..+++|+.|++++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 8877788888888888888888888766665 777888888888888888888888888888888888888888888887
Q ss_pred cccCCCCcccccCCCCCCCCCC
Q 041300 521 TAFRNAPVEALEGNKELCGGVK 542 (716)
Q Consensus 521 ~~~~~~~~~~~~~n~~~c~~~~ 542 (716)
..+.......+.+|+.+|+.+.
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTS
T ss_pred ccccccChHHhcCCCCccCCCC
Confidence 7777777778888888887643
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.1e-32 Score=282.89 Aligned_cols=289 Identities=18% Similarity=0.216 Sum_probs=232.9
Q ss_pred CccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEcc
Q 041300 214 TNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLN 293 (716)
Q Consensus 214 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 293 (716)
.+++.++++++.++ .+|..+. ..++.|++++|.+++..+..+..++.|+.|++++|.+++..|..|.++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCcc-ccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 36888999998887 4555443 478899999999988888888888899999999999888888888888999999999
Q ss_pred CCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcc--cCcccccCCCCCCEEEccCCcccc
Q 041300 294 GNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG--GIPREIGNMSQLQALDLSLNHIVG 371 (716)
Q Consensus 294 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~ 371 (716)
+|.++...+..+ ++|++|++++|.+++..+..|..+++|+.|++++|.++. ..+..+..+ +|++|++++|++++
T Consensus 111 ~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 998885544332 788999999998887777778888899999999988853 667777777 88889999998884
Q ss_pred ccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhC
Q 041300 372 EIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEK 451 (716)
Q Consensus 372 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 451 (716)
+|..+. ++|+.|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 555443 68888899999888777778888888999999999888877778888888999999998888 67777888
Q ss_pred CCCCCEEECCCCcCccccchhccCC------CCCCEEECcCCcCc--ccCCcCCcCCCCCCEEEccCCc
Q 041300 452 LVQLSELDASHNLFGGEIPFQICSL------KSLEKLNLSHNNLS--GLIPNCFEGMHGLSIIDISDNQ 512 (716)
Q Consensus 452 l~~L~~L~ls~N~l~~~~p~~~~~l------~~L~~L~ls~N~l~--~~~~~~~~~~~~L~~l~ls~N~ 512 (716)
+++|++|++++|.+++..+..|+.. +.|+.|++++|.+. ...|..|..+++|+.+++++|+
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 8889999999998887776666553 56888888888887 5667788888888888888875
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.5e-31 Score=279.12 Aligned_cols=289 Identities=20% Similarity=0.219 Sum_probs=183.7
Q ss_pred ccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccC
Q 041300 215 NLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNG 294 (716)
Q Consensus 215 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 294 (716)
+++.++++++.++. +|..+. ..++.|++++|.+++..+..+..++.|+.|++++|.+++..|..|.++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccc-cCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 57777777777763 444332 3577777777777766666666677777777777777766666677777777777777
Q ss_pred CcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcc--cCcccccCCCCCCEEEccCCccccc
Q 041300 295 NNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITG--GIPREIGNMSQLQALDLSLNHIVGE 372 (716)
Q Consensus 295 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~ 372 (716)
|+++...... .++|++|++++|.+++..+..|..+++|+.|++++|.++. ..+..+..+++|++|++++|.++.
T Consensus 110 n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 110 NQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SCCSBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CcCCccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 7766433222 2566777777777666655556666677777777766643 455566666677777777776663
Q ss_pred cCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCC
Q 041300 373 IPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKL 452 (716)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 452 (716)
+|..+. ++|+.|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 444332 56667777777666666666666666777777777666655556666666777777777666 556666666
Q ss_pred CCCCEEECCCCcCccccchhccCC------CCCCEEECcCCcCcc--cCCcCCcCCCCCCEEEccCCc
Q 041300 453 VQLSELDASHNLFGGEIPFQICSL------KSLEKLNLSHNNLSG--LIPNCFEGMHGLSIIDISDNQ 512 (716)
Q Consensus 453 ~~L~~L~ls~N~l~~~~p~~~~~l------~~L~~L~ls~N~l~~--~~~~~~~~~~~L~~l~ls~N~ 512 (716)
++|++|++++|.+++..+..|+.. +.|+.|++++|.+.. ..|..|..+.+++.+++++|+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 666777777776665555555432 556666666666643 445566666666666666663
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.2e-31 Score=280.14 Aligned_cols=288 Identities=20% Similarity=0.228 Sum_probs=140.4
Q ss_pred CCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEee
Q 041300 101 KLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYIN 180 (716)
Q Consensus 101 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 180 (716)
+|+.+++++|.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|+|++|.+++..|..|+++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3555555555554 3343332 455555555555555555555555555555555555555555555555555555555
Q ss_pred cccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCC
Q 041300 181 NNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRG 260 (716)
Q Consensus 181 ~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 260 (716)
+|.++. ++..+ . ++|++|++++|.+.+ ..+..+..+
T Consensus 111 ~n~l~~-l~~~~------------------~--~~L~~L~l~~n~i~~-----------------------~~~~~~~~l 146 (332)
T 2ft3_A 111 KNHLVE-IPPNL------------------P--SSLVELRIHDNRIRK-----------------------VPKGVFSGL 146 (332)
T ss_dssp SSCCCS-CCSSC------------------C--TTCCEEECCSSCCCC-----------------------CCSGGGSSC
T ss_pred CCcCCc-cCccc------------------c--ccCCEEECCCCccCc-----------------------cCHhHhCCC
Confidence 555441 11110 0 234444444444432 222223333
Q ss_pred CCccEEEecCCccc--ccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEE
Q 041300 261 GLLEAFIVSENHFQ--GTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL 338 (716)
Q Consensus 261 ~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 338 (716)
+.|+.|++++|.++ +..+..+..+ +|+.|++++|++++... .+. ++|+.|
T Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-------------------------~~~--~~L~~L 198 (332)
T 2ft3_A 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-------------------------DLP--ETLNEL 198 (332)
T ss_dssp SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-------------------------SSC--SSCSCC
T ss_pred ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-------------------------ccc--CCCCEE
Confidence 33333333333332 1333334333 44444444444443221 111 344455
Q ss_pred EcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 041300 339 NVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFN 418 (716)
Q Consensus 339 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 418 (716)
++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.++
T Consensus 199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 55555555444444555555555555555555444444555555555555555555 44444555555555555555555
Q ss_pred ccCchhhcC------cCCCCEEECcCCcCc--ccCChhhhCCCCCCEEECCCCc
Q 041300 419 NSVPESLGN------LLKLHYLGLSNNQFV--LELPKELEKLVQLSELDASHNL 464 (716)
Q Consensus 419 ~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~ls~N~ 464 (716)
+..+..|.. ...|+.|++++|++. ...|..|..+++|+.+++++|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 444444433 245666666666665 4555666667777777776664
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.7e-31 Score=277.25 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=71.9
Q ss_pred CCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEc
Q 041300 333 PKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDF 412 (716)
Q Consensus 333 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 412 (716)
++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 44555555555555444555555555555555555555444445555555555555555555 44555555555666666
Q ss_pred cCCcCCccCchhhcC------cCCCCEEECcCCcCcc--cCChhhhCCCCCCEEECCCCc
Q 041300 413 SANKFNNSVPESLGN------LLKLHYLGLSNNQFVL--ELPKELEKLVQLSELDASHNL 464 (716)
Q Consensus 413 s~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~ls~N~ 464 (716)
++|.+++..+..|.. ...|+.|++++|.+.. ..|..|..+..++.+++++|+
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 666555544444432 2456677777776642 445666667777777777764
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=5.4e-35 Score=320.43 Aligned_cols=365 Identities=20% Similarity=0.156 Sum_probs=173.9
Q ss_pred CCCcEEECCCCCccccCccc-ccCCCCCCEEECcCCcCcc----cCCccccCCCCCCEEEcccccCccCCCcccc-CCC-
Q 041300 76 PQLVHLDLSLNGFFGTIPSQ-IGNLTKLSYISLDSNQLSG----KIPAEVGLLTHLKVLSFQFNELDGSIPPEVC-QLS- 148 (716)
Q Consensus 76 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~- 148 (716)
++|++|||++|++....... +..+++|++|+|++|.++. .++..+..+++|++|+|++|.+....+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45667777777765443332 6667777777777777663 2345566667777777777776654333332 344
Q ss_pred ---CCceeecccccccC----CCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEe
Q 041300 149 ---SIEELFLYSNHLNG----SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGL 221 (716)
Q Consensus 149 ---~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l 221 (716)
+|++|+|++|.++. .++..|..+++|++|++++|.+++..+..+... .....++|++|++
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-------------l~~~~~~L~~L~L 149 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG-------------LLDPQCRLEKLQL 149 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH-------------HTSTTCCCCEEEC
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH-------------HhcCCCcceEEEC
Confidence 57777777777663 346666777777777777777664333222110 0111234555555
Q ss_pred eCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccc-----cCCCCcEEEccCCc
Q 041300 222 MDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLR-----NCTSLIRVRLNGNN 296 (716)
Q Consensus 222 ~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~ 296 (716)
++|.+++.....+ +..+...+.|+.|++++|.+....+..+. .+++|+.|++++|.
T Consensus 150 ~~n~l~~~~~~~l-------------------~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 150 EYCSLSAASCEPL-------------------ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp TTSCCBGGGHHHH-------------------HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred CCCCCCHHHHHHH-------------------HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 5555543221111 11111122223333333322221111111 13355555555555
Q ss_pred CCCc----cchhhCCCCCCCEEEccCCcccccc-----CCCCCCCCCCCEEEcccCcCccc----CcccccCCCCCCEEE
Q 041300 297 LTGN----ISEALGLYPNLTFIDLSRNNFYGEI-----SSNWGKCPKLGTLNVSMNNITGG----IPREIGNMSQLQALD 363 (716)
Q Consensus 297 l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ 363 (716)
++.. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.++.. ++..+..+++|++|+
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEE
Confidence 5542 2334444555555555555554321 11122344555555555554432 233344445555555
Q ss_pred ccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCcc----CchhhcCcCCCCEEECcCC
Q 041300 364 LSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNS----VPESLGNLLKLHYLGLSNN 439 (716)
Q Consensus 364 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N 439 (716)
+++|.+.+..+..+... .....++|+.|++++|.+++. ++..+..+++|++|++++|
T Consensus 291 Ls~n~i~~~~~~~l~~~-------------------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 291 LAGNELGDEGARLLCET-------------------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp CTTCCCHHHHHHHHHHH-------------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred CCCCCCchHHHHHHHHH-------------------hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 55554443222221110 001123444555555544433 2333444455555555555
Q ss_pred cCcccCChhhhC-----CCCCCEEECCCCcCcc----ccchhccCCCCCCEEECcCCcCcc
Q 041300 440 QFVLELPKELEK-----LVQLSELDASHNLFGG----EIPFQICSLKSLEKLNLSHNNLSG 491 (716)
Q Consensus 440 ~l~~~~~~~~~~-----l~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~ 491 (716)
++....+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|+++.
T Consensus 352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 554333332221 3455555555555553 445555555555556665555543
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=1.9e-32 Score=284.72 Aligned_cols=279 Identities=20% Similarity=0.243 Sum_probs=152.3
Q ss_pred hHHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEE
Q 041300 2 NEEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHL 81 (716)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L 81 (716)
.+|++||++||.++..++.+.+.+|..+. ....++|.|.|+.|+... ..+ .....+.++.|
T Consensus 26 ~~~~~aLl~~k~~~~~~~~~~~~~w~~~~---~~~~~~~~~~g~~~~~~~-------------~~l---~~~~~~~l~~L 86 (328)
T 4fcg_A 26 RPYHDVLSQWQRHYNADRNRWHSAWRQAN---SNNPQIETRTGRALKATA-------------DLL---EDATQPGRVAL 86 (328)
T ss_dssp CCHHHHHHHHHHHHHHCCTTHHHHHHHHT---TTCTTSCCSHHHHHHHHH-------------HHH---HHHTSTTCCEE
T ss_pred chHHHHHHHHHHhccCCchhhhhhhcccc---cccccccccCCcchhhhH-------------HHH---hcccccceeEE
Confidence 46889999999998667766667783111 012378999999995210 000 00123445555
Q ss_pred ECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeeccccccc
Q 041300 82 DLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLN 161 (716)
Q Consensus 82 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (716)
+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+..+++|++|+|++|.+.
T Consensus 87 ~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 87 ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp EEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC
T ss_pred EccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc
Confidence 55555555 34444555666666666666655 55555555666666666666555 44555555566666666655555
Q ss_pred CCCCcccc---------CCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCC
Q 041300 162 GSLPPFLG---------NLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPP 232 (716)
Q Consensus 162 ~~~p~~~~---------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 232 (716)
+.+|..+. ++++|++|++++|.++ .+|.. +.++++|++|++++|.+++. |+
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~------------------l~~l~~L~~L~L~~N~l~~l-~~ 223 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS------------------IANLQNLKSLKIRNSPLSAL-GP 223 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG------------------GGGCTTCCEEEEESSCCCCC-CG
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh------------------hcCCCCCCEEEccCCCCCcC-ch
Confidence 55555443 3666666666666655 22222 23333556666666665532 22
Q ss_pred ccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCC
Q 041300 233 SFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLT 312 (716)
Q Consensus 233 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 312 (716)
. +..++.|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+
T Consensus 224 ~-----------------------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 224 A-----------------------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280 (328)
T ss_dssp G-----------------------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred h-----------------------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCC
Confidence 2 22333344444444444444444455555555555555555555555555555555
Q ss_pred EEEccCCccccccCCCCCCCCCCCEEEcccCcC
Q 041300 313 FIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNI 345 (716)
Q Consensus 313 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 345 (716)
+|+|++|.+.+.+|..+..+++|+.+++..+.+
T Consensus 281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 555555555555555555555555555554443
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.2e-35 Score=319.44 Aligned_cols=361 Identities=21% Similarity=0.214 Sum_probs=244.6
Q ss_pred CCCCEEECcCCcCcccCCcc-ccCCCCCCEEEcccccCcc----CCCccccCCCCCceeecccccccCCCCccc-cCCc-
Q 041300 100 TKLSYISLDSNQLSGKIPAE-VGLLTHLKVLSFQFNELDG----SIPPEVCQLSSIEELFLYSNHLNGSLPPFL-GNLS- 172 (716)
Q Consensus 100 ~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~- 172 (716)
++|++|+|++|.++...... +..+++|++|+|++|.++. .++..+..+++|++|+|++|.++...+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46788888888887544333 6778888888888888774 345566777888888888888765444333 2344
Q ss_pred ---CCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcC
Q 041300 173 ---NIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHF 249 (716)
Q Consensus 173 ---~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l 249 (716)
+|++|++++|.++...... ++..+..+++|++|++++|.+.+..+.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~--------------l~~~l~~~~~L~~L~Ls~n~i~~~~~~----------------- 131 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGV--------------LSSTLRTLPTLQELHLSDNLLGDAGLQ----------------- 131 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHH--------------HHHHTTSCTTCCEEECCSSBCHHHHHH-----------------
T ss_pred CCCceeEEEccCCCCCHHHHHH--------------HHHHHccCCceeEEECCCCcCchHHHH-----------------
Confidence 5777777777766321100 112233344666666666655432111
Q ss_pred ccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCcc----chhhCCCCCCCEEEccCCcccccc
Q 041300 250 TGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNI----SEALGLYPNLTFIDLSRNNFYGEI 325 (716)
Q Consensus 250 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~ 325 (716)
.+.. ......++|++|++++|+++... +..+..+++|++|++++|.++...
T Consensus 132 ------~l~~-------------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 132 ------LLCE-------------------GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp ------HHHH-------------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred ------HHHH-------------------HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 1110 00111234555555555554422 334445566666666666665433
Q ss_pred CCCCC-----CCCCCCEEEcccCcCccc----CcccccCCCCCCEEEccCCcccccc-----CcccCCCCCCcEEEccCC
Q 041300 326 SSNWG-----KCPKLGTLNVSMNNITGG----IPREIGNMSQLQALDLSLNHIVGEI-----PKELGKLNSLTKLILRGN 391 (716)
Q Consensus 326 ~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~N 391 (716)
+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|+.|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 32222 245777788888777753 4666777888888888888887543 223345788999999999
Q ss_pred ccccc----CCcccCCCCCCCEEEccCCcCCccCchhhcC-----cCCCCEEECcCCcCccc----CChhhhCCCCCCEE
Q 041300 392 QLTGR----LPTEIGSLIELEYLDFSANKFNNSVPESLGN-----LLKLHYLGLSNNQFVLE----LPKELEKLVQLSEL 458 (716)
Q Consensus 392 ~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L 458 (716)
++++. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|.++.. ++..+..+++|++|
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 98854 5666777899999999999997655544443 36999999999999865 45667788999999
Q ss_pred ECCCCcCccccchhccC-----CCCCCEEECcCCcCcc----cCCcCCcCCCCCCEEEccCCccccc
Q 041300 459 DASHNLFGGEIPFQICS-----LKSLEKLNLSHNNLSG----LIPNCFEGMHGLSIIDISDNQLQGP 516 (716)
Q Consensus 459 ~ls~N~l~~~~p~~~~~-----l~~L~~L~ls~N~l~~----~~~~~~~~~~~L~~l~ls~N~l~~~ 516 (716)
++++|.+++..+..+.. .++|+.|++++|+++. .+|..+..+++|+.||+++|++++.
T Consensus 347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 99999998776655543 6799999999999986 6788888899999999999998753
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.1e-29 Score=265.50 Aligned_cols=281 Identities=17% Similarity=0.143 Sum_probs=189.9
Q ss_pred CCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCC
Q 041300 38 SPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP 117 (716)
Q Consensus 38 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 117 (716)
.+|.|.|+ |+ .+++++. .++. .+ .++|++|++++|.+.++.+..|.++++|++|+|++|.+++..|
T Consensus 28 ~~C~~~~~-c~---------~~~~~l~-~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (353)
T 2z80_A 28 LSCDRNGI-CK---------GSSGSLN-SIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93 (353)
T ss_dssp CEECTTSE-EE---------CCSTTCS-SCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred CCCCCCeE-ee---------CCCCCcc-cccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH
Confidence 56888887 64 4556665 3433 22 3589999999999998888889999999999999999998888
Q ss_pred ccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCC-ccccCCcCCcEEEeeccc-ccccccccccCC
Q 041300 118 AEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLP-PFLGNLSNIVRLYINNNS-LSGSILTNIGNL 195 (716)
Q Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l 195 (716)
..|+.+++|++|+|++|.+++..+..|.++++|++|++++|.++...+ ..|.++++|++|++++|. +++..+..+
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--- 170 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF--- 170 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT---
T ss_pred hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc---
Confidence 899999999999999999997666669999999999999999986655 588999999999999984 554333333
Q ss_pred CCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccc-cccEEEccCCcCccccCccccCCCCccEEEecCCccc
Q 041300 196 KFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNS-MLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQ 274 (716)
Q Consensus 196 ~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (716)
..+++|++|++++|.+.+..|..+... +|++|++++|.++......+..++.|+.|++++|.++
T Consensus 171 ---------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 171 ---------------AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp ---------------TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred ---------------cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 445577888888888777666666543 5677777776665443333334555666666666555
Q ss_pred ccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCcccc----ccCCCCCCCCCCCEEEcccCcCcccCc
Q 041300 275 GTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYG----EISSNWGKCPKLGTLNVSMNNITGGIP 350 (716)
Q Consensus 275 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~ 350 (716)
+..+..+.. ....+.++.++++++.+.+ .+|..+..+++|+.|++++|+++...+
T Consensus 236 ~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~ 294 (353)
T 2z80_A 236 TFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294 (353)
T ss_dssp TCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT
T ss_pred ccccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH
Confidence 443332221 1123344455555554443 233344555566666666666653333
Q ss_pred ccccCCCCCCEEEccCCcccc
Q 041300 351 REIGNMSQLQALDLSLNHIVG 371 (716)
Q Consensus 351 ~~~~~l~~L~~L~L~~n~l~~ 371 (716)
..|..+++|++|++++|.+.+
T Consensus 295 ~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 295 GIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp TTTTTCTTCCEEECCSSCBCC
T ss_pred HHHhcCCCCCEEEeeCCCccC
Confidence 334566666666666666654
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.3e-29 Score=259.73 Aligned_cols=250 Identities=21% Similarity=0.263 Sum_probs=199.4
Q ss_pred EEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccc--cCCCCCCCCCCCEEEccc
Q 041300 265 AFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGE--ISSNWGKCPKLGTLNVSM 342 (716)
Q Consensus 265 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~ 342 (716)
.++++++.++ .+|..+. ++|+.|++++|+++...+..|..+++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 3444444444 2333322 5677788888887766666677788888888888877643 244556678888888888
Q ss_pred CcCcccCcccccCCCCCCEEEccCCccccccC-cccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCc-c
Q 041300 343 NNITGGIPREIGNMSQLQALDLSLNHIVGEIP-KELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNN-S 420 (716)
Q Consensus 343 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ 420 (716)
|.++. +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .
T Consensus 88 n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Ccccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 88874 56668888888888888888886554 568888889999999998888888888888899999999998876 5
Q ss_pred CchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCC
Q 041300 421 VPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGM 500 (716)
Q Consensus 421 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~ 500 (716)
.|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 77888888999999999999988888888889999999999999988777788889999999999999999888888888
Q ss_pred C-CCCEEEccCCcccccCC
Q 041300 501 H-GLSIIDISDNQLQGPVP 518 (716)
Q Consensus 501 ~-~L~~l~ls~N~l~~~~p 518 (716)
+ +|+.|++++|++++..+
T Consensus 247 ~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CTTCCEEECTTCCEECSGG
T ss_pred hccCCEEEccCCCeecccC
Confidence 4 89999999999987644
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-29 Score=266.92 Aligned_cols=279 Identities=17% Similarity=0.156 Sum_probs=162.5
Q ss_pred ccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccC
Q 041300 215 NLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNG 294 (716)
Q Consensus 215 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 294 (716)
.....+++++.++. +|..+. ..+++|++++|.+++..+..+. ++++|+.|++++
T Consensus 32 ~~~~c~~~~~~l~~-iP~~~~-~~L~~L~l~~n~i~~~~~~~~~------------------------~l~~L~~L~L~~ 85 (353)
T 2z80_A 32 RNGICKGSSGSLNS-IPSGLT-EAVKSLDLSNNRITYISNSDLQ------------------------RCVNLQALVLTS 85 (353)
T ss_dssp TTSEEECCSTTCSS-CCTTCC-TTCCEEECTTSCCCEECTTTTT------------------------TCTTCCEEECTT
T ss_pred CCeEeeCCCCCccc-cccccc-ccCcEEECCCCcCcccCHHHhc------------------------cCCCCCEEECCC
Confidence 33445666666653 333222 2455555555555554444444 444555555555
Q ss_pred CcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCc-ccccCCCCCCEEEccCC-ccccc
Q 041300 295 NNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIP-REIGNMSQLQALDLSLN-HIVGE 372 (716)
Q Consensus 295 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~ 372 (716)
|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 86 NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred CccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc
Confidence 55444444444445555555555555544333334445555555555555543322 24555555555555555 34444
Q ss_pred cCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhh--
Q 041300 373 IPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELE-- 450 (716)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-- 450 (716)
.+..+..+++|+.|++++|++++..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+.
T Consensus 166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc
Confidence 445555556666666666666555555566666666666666665433333334456666666666666544333322
Q ss_pred -CCCCCCEEECCCCcCcc----ccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCC
Q 041300 451 -KLVQLSELDASHNLFGG----EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPN 519 (716)
Q Consensus 451 -~l~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~ 519 (716)
....++.++++++.+.+ .+|..+..+++|+.|++++|+++.+.+..|..+++|+.|++++|++.+.+|.
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 34567777777777765 3677788899999999999999966556678999999999999999987764
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.3e-28 Score=265.20 Aligned_cols=250 Identities=22% Similarity=0.237 Sum_probs=203.9
Q ss_pred cEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccC
Q 041300 264 EAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMN 343 (716)
Q Consensus 264 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 343 (716)
..++.+++.++ .+|..+. ++++.|+|++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 34455555554 3444332 57788888888888877888888888888888888888887788888888888888888
Q ss_pred cCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccC-CcccccCCcccCCCCCCCEEEccCCcCCccCc
Q 041300 344 NITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG-NQLTGRLPTEIGSLIELEYLDFSANKFNNSVP 422 (716)
Q Consensus 344 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 422 (716)
++++..+..|..+++|++|+|++|++....+..|..+++|+.|++++ |.+....+..+.++++|++|+|++|.+++. |
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence 88877777788888888888888888876667788888888888888 455544445688888999999999988754 3
Q ss_pred hhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCC
Q 041300 423 ESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHG 502 (716)
Q Consensus 423 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~ 502 (716)
.+..+++|+.|+|++|++++..|..|.++++|+.|++++|++++..|..|..+++|+.|+|++|+|++..+..|..+++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 4778889999999999998888888999999999999999999888888999999999999999999888888899999
Q ss_pred CCEEEccCCcccccCC
Q 041300 503 LSIIDISDNQLQGPVP 518 (716)
Q Consensus 503 L~~l~ls~N~l~~~~p 518 (716)
|+.|++++|++.+...
T Consensus 292 L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 292 LVELHLHHNPWNCDCD 307 (452)
T ss_dssp CCEEECCSSCEECSTT
T ss_pred CCEEEccCCCcCCCCC
Confidence 9999999999887654
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.9e-28 Score=262.86 Aligned_cols=249 Identities=23% Similarity=0.271 Sum_probs=192.5
Q ss_pred EEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCc
Q 041300 265 AFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN 344 (716)
Q Consensus 265 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 344 (716)
.++.+++.++ .+|..+. ++++.|+|++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|+
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4444555544 3344333 567777777777777777777777778888888877777766777777888888888888
Q ss_pred CcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccC-CcccccCCcccCCCCCCCEEEccCCcCCccCch
Q 041300 345 ITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG-NQLTGRLPTEIGSLIELEYLDFSANKFNNSVPE 423 (716)
Q Consensus 345 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 423 (716)
++...+..|..+++|++|++++|.+....+..|..+++|+.|++++ |.+....+..|.++++|++|+|++|.++. +|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-
Confidence 7766666777788888888888888766666777888888888887 44444444467788888888888888874 34
Q ss_pred hhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCC
Q 041300 424 SLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGL 503 (716)
Q Consensus 424 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L 503 (716)
.+..+++|+.|+|++|++++..|..|.++++|+.|++++|++++..+..|..+++|+.|+|++|+|+...+..|..+++|
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 47778888888888888888888888888889999999998888888888888999999999999998888888888999
Q ss_pred CEEEccCCcccccCC
Q 041300 504 SIIDISDNQLQGPVP 518 (716)
Q Consensus 504 ~~l~ls~N~l~~~~p 518 (716)
+.|++++|++.+...
T Consensus 282 ~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 282 ERIHLHHNPWNCNCD 296 (440)
T ss_dssp CEEECCSSCEECSST
T ss_pred CEEEcCCCCccCCCC
Confidence 999999999876543
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.5e-30 Score=283.36 Aligned_cols=216 Identities=20% Similarity=0.219 Sum_probs=143.5
Q ss_pred CCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEc
Q 041300 285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDL 364 (716)
Q Consensus 285 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 364 (716)
++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..+ +..+++|++|+|++|.+++..+ .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 356666666666666666666666666666666666665544 6666667777777666664322 266777777
Q ss_pred cCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhc-CcCCCCEEECcCCcCcc
Q 041300 365 SLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLG-NLLKLHYLGLSNNQFVL 443 (716)
Q Consensus 365 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~ 443 (716)
++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 77777654433 345677777777777766666667777777777777777766666654 56777777777777765
Q ss_pred cCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccc
Q 041300 444 ELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514 (716)
Q Consensus 444 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~ 514 (716)
..+ +..+++|+.|+|++|.+++..| .+..+++|+.|++++|+|++ +|..+..+++|+.|++++|++.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 422 2346777777777777775444 36677777777777777775 4555677777777777777776
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.5e-28 Score=253.51 Aligned_cols=257 Identities=22% Similarity=0.238 Sum_probs=174.4
Q ss_pred CccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCc--cchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEE
Q 041300 262 LLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGN--ISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLN 339 (716)
Q Consensus 262 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 339 (716)
.++.|++++|+++...+..|.++++|+.|++++|.++.. .+..+..+++|++|++++|.+.. ++..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE
Confidence 455555555555544444566667777777777776633 24455566777777777777764 344466777777777
Q ss_pred cccCcCcccCc-ccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccc-cCCcccCCCCCCCEEEccCCcC
Q 041300 340 VSMNNITGGIP-REIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTG-RLPTEIGSLIELEYLDFSANKF 417 (716)
Q Consensus 340 L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l 417 (716)
+++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 77777775544 466777777777777777777777777777777777777777765 4667777777888888888887
Q ss_pred CccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCC-CCCEEECcCCcCcccCC--
Q 041300 418 NNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLK-SLEKLNLSHNNLSGLIP-- 494 (716)
Q Consensus 418 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~-~L~~L~ls~N~l~~~~~-- 494 (716)
++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..|..+..++ +|+.|++++|.+++.-+
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence 777677777777888888888887766666777777888888888888777777777774 78888888888765321
Q ss_pred cCCcCCCCCCEEEccCCcccccCCC
Q 041300 495 NCFEGMHGLSIIDISDNQLQGPVPN 519 (716)
Q Consensus 495 ~~~~~~~~L~~l~ls~N~l~~~~p~ 519 (716)
.....+...+.+....+.+.+..|.
T Consensus 268 ~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 268 SFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp HHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred HHHHHHHhhhhhhccccccccCCch
Confidence 1111122333444555666555443
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=7.4e-31 Score=297.06 Aligned_cols=433 Identities=15% Similarity=0.122 Sum_probs=240.1
Q ss_pred CCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCc---cccCccccc------------CCCCC
Q 041300 38 SPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGF---FGTIPSQIG------------NLTKL 102 (716)
Q Consensus 38 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i---~~~~~~~~~------------~l~~L 102 (716)
.|+.|.++.+... ..+.+.+. .. ...+..+..+++|++|+|+++.. .+.+|..++ .+++|
T Consensus 40 vck~W~~~~~~~~---~~l~~~~~-~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 114 (592)
T 3ogk_B 40 VCRRWFKIDSETR---EHVTMALC-YT-ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL 114 (592)
T ss_dssp SCHHHHHHHHHHC---CEEEESCG-GG-SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HhHHHHHhhhccc---cEEEEeec-cc-cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence 4558999864321 22333322 11 11123456678899999987643 123333332 67888
Q ss_pred CEEECcCCcCcccCCccccCC--CCCCEEEccccc-Ccc-CCCccccCCCCCceeecccccccCC----CCccccCCcCC
Q 041300 103 SYISLDSNQLSGKIPAEVGLL--THLKVLSFQFNE-LDG-SIPPEVCQLSSIEELFLYSNHLNGS----LPPFLGNLSNI 174 (716)
Q Consensus 103 ~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~N~-l~~-~~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L 174 (716)
++|+|++|.+++..+..+... .+|++|+|++|. +.. .++.....+++|++|+|++|.+++. ++..+.++++|
T Consensus 115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L 194 (592)
T 3ogk_B 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194 (592)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence 888888888876666666553 348888888876 211 1122234678888888888887655 23345567888
Q ss_pred cEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCcccc-ccccEEEccCCcCc---
Q 041300 175 VRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGNHFT--- 250 (716)
Q Consensus 175 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~--- 250 (716)
++|++++|.+++.....+ +..+.++++|++|++++|.+.+ +|..+.. .+|+.|+++.....
T Consensus 195 ~~L~L~~n~~~~~~~~~l--------------~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 195 EVLNFYMTEFAKISPKDL--------------ETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp CEEECTTCCCSSCCHHHH--------------HHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred cEEEeeccCCCccCHHHH--------------HHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccch
Confidence 888888887763221111 1112234466666666666554 2233322 25666666542221
Q ss_pred cccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccc-hhhCCCCCCCEEEccCCcccc-ccCCC
Q 041300 251 GYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNIS-EALGLYPNLTFIDLSRNNFYG-EISSN 328 (716)
Q Consensus 251 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~-~~~~~ 328 (716)
...+..+..+++|+.+.++++. ...+|..+..+++|+.|++++|.++.... ..+..+++|++|+++ +.+.. .++..
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~ 337 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL 337 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH
T ss_pred HHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH
Confidence 1222334445566666666542 23455566666777777777776554332 334666777777776 33332 22223
Q ss_pred CCCCCCCCEEEcc-----------cCcCccc-CcccccCCCCCCEEEccCCccccccCcccCC-CCCCcEEEcc----CC
Q 041300 329 WGKCPKLGTLNVS-----------MNNITGG-IPREIGNMSQLQALDLSLNHIVGEIPKELGK-LNSLTKLILR----GN 391 (716)
Q Consensus 329 ~~~l~~L~~L~L~-----------~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~N 391 (716)
+..+++|++|+++ .|.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 3456667777777 2445432 1222344667777777666666555544443 6667777774 45
Q ss_pred ccccc-----CCcccCCCCCCCEEEccCCc--CCccCchhhc-CcCCCCEEECcCCcCcc-cCChhhhCCCCCCEEECCC
Q 041300 392 QLTGR-----LPTEIGSLIELEYLDFSANK--FNNSVPESLG-NLLKLHYLGLSNNQFVL-ELPKELEKLVQLSELDASH 462 (716)
Q Consensus 392 ~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~ls~ 462 (716)
.+++. ++..+.++++|+.|++++|. +++..+..+. .+++|++|++++|++++ .++..+..+++|++|++++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence 55532 22224456666666665432 4443333332 35666666666666654 2333345566666666666
Q ss_pred CcCccc-cchhccCCCCCCEEECcCCcCccc
Q 041300 463 NLFGGE-IPFQICSLKSLEKLNLSHNNLSGL 492 (716)
Q Consensus 463 N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~ 492 (716)
|.+++. ++..+..+++|+.|++++|+++..
T Consensus 498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 666543 233334566666666666666543
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.1e-28 Score=248.38 Aligned_cols=210 Identities=22% Similarity=0.210 Sum_probs=133.8
Q ss_pred CCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCc-cccccCcccCCCCCCcEEE
Q 041300 309 PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNH-IVGEIPKELGKLNSLTKLI 387 (716)
Q Consensus 309 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 387 (716)
++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|. +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 455666666666655555555566666666666666665555566666666666666665 5544455566666666666
Q ss_pred ccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcc
Q 041300 388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG 467 (716)
Q Consensus 388 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 467 (716)
+++|++++..|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66666665555556666666666666666665555556666666666666666665555556666667777777777666
Q ss_pred ccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300 468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP 518 (716)
Q Consensus 468 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p 518 (716)
..|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 666666667777777777777766655666667777777777777765444
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.7e-28 Score=247.05 Aligned_cols=207 Identities=21% Similarity=0.198 Sum_probs=124.9
Q ss_pred CCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCc-CcccCcccccCCCCCCEEE
Q 041300 285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN-ITGGIPREIGNMSQLQALD 363 (716)
Q Consensus 285 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 363 (716)
++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. ++...|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 355555555555555555555555566666666666555555555556666666666664 5544455556666666666
Q ss_pred ccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcc
Q 041300 364 LSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVL 443 (716)
Q Consensus 364 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 443 (716)
+++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|++++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66666665555556666666666666666665444445666666666666666665555556666666666666666665
Q ss_pred cCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcc
Q 041300 444 ELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG 491 (716)
Q Consensus 444 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 491 (716)
..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 556666666666666666666665555556666666666666666653
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=9.6e-28 Score=249.28 Aligned_cols=225 Identities=20% Similarity=0.262 Sum_probs=133.6
Q ss_pred CCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEc
Q 041300 285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDL 364 (716)
Q Consensus 285 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 364 (716)
..++.|++++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34444444444444 22333333444555555555544 34444445555555555555554 34444555555555555
Q ss_pred cCCccccccCcccC---------CCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEE
Q 041300 365 SLNHIVGEIPKELG---------KLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLG 435 (716)
Q Consensus 365 ~~n~l~~~~~~~~~---------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 435 (716)
++|.+.+.+|..+. .+++|++|++++|+++ .+|..+..+++|++|+|++|.+++ +|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 55544444444433 3666666666666666 556666666666666666666663 444566666677777
Q ss_pred CcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccc
Q 041300 436 LSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514 (716)
Q Consensus 436 Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~ 514 (716)
+++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 7776666666666666677777777776666666766667777777777777777677777777777777777665544
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.3e-27 Score=257.34 Aligned_cols=228 Identities=23% Similarity=0.210 Sum_probs=169.1
Q ss_pred CCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEc
Q 041300 261 GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV 340 (716)
Q Consensus 261 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 340 (716)
+.++.|++++|++++..+..|.++++|+.|+|++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 34555666666666666666667777777777777777666667777777777777777777666666777777777777
Q ss_pred ccCcCcccCcccccCCCCCCEEEccC-CccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCc
Q 041300 341 SMNNITGGIPREIGNMSQLQALDLSL-NHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNN 419 (716)
Q Consensus 341 ~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 419 (716)
++|+++...+..|..+++|+.|++++ |.+....+..|..+++|+.|++++|++++. | .+..+++|+.|+|++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 77777766666777777777777777 444433444577777888888888887743 3 47777888888888888887
Q ss_pred cCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300 420 SVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS 490 (716)
Q Consensus 420 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 490 (716)
..|..|.++++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77888888888888888888888777788888888888888888888777777778888888888888775
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.8e-27 Score=255.86 Aligned_cols=228 Identities=22% Similarity=0.230 Sum_probs=163.9
Q ss_pred CCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEc
Q 041300 261 GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNV 340 (716)
Q Consensus 261 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 340 (716)
+.++.|++++|++.+..+..|.++++|+.|+|++|.++...+..|..+++|++|+|++|+++...+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34555555555555555566666677777777777777666666777777777777777777666666777777777777
Q ss_pred ccCcCcccCcccccCCCCCCEEEccC-CccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCc
Q 041300 341 SMNNITGGIPREIGNMSQLQALDLSL-NHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNN 419 (716)
Q Consensus 341 ~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 419 (716)
++|+++...+..|..+++|++|++++ |.+....+..|..+++|+.|++++|+++ .+| .+..+++|+.|+|++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 77777766666677777777777777 3444334446777777777777777776 334 46777778888888888877
Q ss_pred cCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300 420 SVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS 490 (716)
Q Consensus 420 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 490 (716)
..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 77777778888888888888887777777777888888888888888777777777888888888888775
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.7e-29 Score=259.53 Aligned_cols=247 Identities=17% Similarity=0.176 Sum_probs=195.1
Q ss_pred CCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCC-CccchhhC-------CCCCCCEEEccCCccccccCCCC-
Q 041300 259 RGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLT-GNISEALG-------LYPNLTFIDLSRNNFYGEISSNW- 329 (716)
Q Consensus 259 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~~~~~~-------~~~~L~~L~Ls~n~l~~~~~~~~- 329 (716)
..+.|+.+++++|.+ .+|..+... |+.|++++|.++ ...+..+. .+++|++|++++|.+++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 334455566666666 445544433 677777777773 33444443 67889999999999988777765
Q ss_pred -CCCCCCCEEEcccCcCcccCcccccCC-----CCCCEEEccCCccccccCcccCCCCCCcEEEccCCccccc--CCccc
Q 041300 330 -GKCPKLGTLNVSMNNITGGIPREIGNM-----SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR--LPTEI 401 (716)
Q Consensus 330 -~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~ 401 (716)
..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..|..+..+++|++|++++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 7889999999999999877 7777776 8999999999999988778899999999999999997754 23334
Q ss_pred --CCCCCCCEEEccCCcCCcc---CchhhcCcCCCCEEECcCCcCcccCC-hhhhCCCCCCEEECCCCcCccccchhccC
Q 041300 402 --GSLIELEYLDFSANKFNNS---VPESLGNLLKLHYLGLSNNQFVLELP-KELEKLVQLSELDASHNLFGGEIPFQICS 475 (716)
Q Consensus 402 --~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~p~~~~~ 475 (716)
..+++|++|+|++|.+++. ....+..+++|++|++++|++++..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 7889999999999999832 22445678999999999999987664 45667889999999999998 6777666
Q ss_pred CCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccc
Q 041300 476 LKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG 515 (716)
Q Consensus 476 l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~ 515 (716)
++|+.|++++|+|++. |. +..+++|+.|++++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8999999999999987 55 8899999999999999976
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5.1e-30 Score=290.17 Aligned_cols=408 Identities=15% Similarity=0.057 Sum_probs=294.1
Q ss_pred CcccccCCCCCCEEECcCCcC---cccCCcccc------------CCCCCCEEEcccccCccCCCccccCC--CCCceee
Q 041300 92 IPSQIGNLTKLSYISLDSNQL---SGKIPAEVG------------LLTHLKVLSFQFNELDGSIPPEVCQL--SSIEELF 154 (716)
Q Consensus 92 ~~~~~~~l~~L~~L~Ls~N~l---~~~~p~~~~------------~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~ 154 (716)
.+..+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 345566788899999987542 123333322 67888888888888776656666553 3488888
Q ss_pred ccccc-ccC-CCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccC--
Q 041300 155 LYSNH-LNG-SLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSI-- 230 (716)
Q Consensus 155 L~~N~-l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 230 (716)
|++|. ++. ..+....++++|++|+|++|.+++.....+ +.....+++|++|++++|.+++..
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l--------------~~~~~~~~~L~~L~L~~n~~~~~~~~ 210 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL--------------HELAQHNTSLEVLNFYMTEFAKISPK 210 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH--------------HHHHHHCCCCCEEECTTCCCSSCCHH
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH--------------HHHHhcCCCccEEEeeccCCCccCHH
Confidence 88876 211 112223467888888888888765421111 112234568999999999887322
Q ss_pred --CCccc-cccccEEEccCCcCccccCccccCCCCccEEEecCCccc---ccCCcccccCCCCcEEEccCCcCCCccchh
Q 041300 231 --PPSFG-NSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQ---GTIPESLRNCTSLIRVRLNGNNLTGNISEA 304 (716)
Q Consensus 231 --~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~---~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~ 304 (716)
+..+. .++|+.|++++|.+.+ ++..+..++.|+.|.++..... ...+..+..+++|+.|.++++.. ...+..
T Consensus 211 ~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~ 288 (592)
T 3ogk_B 211 DLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPIL 288 (592)
T ss_dssp HHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGG
T ss_pred HHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHH
Confidence 22222 2479999999999987 4577888999999999864332 33456677889999999988643 456677
Q ss_pred hCCCCCCCEEEccCCccccccC-CCCCCCCCCCEEEcccCcCc-ccCcccccCCCCCCEEEcc-----------CCcccc
Q 041300 305 LGLYPNLTFIDLSRNNFYGEIS-SNWGKCPKLGTLNVSMNNIT-GGIPREIGNMSQLQALDLS-----------LNHIVG 371 (716)
Q Consensus 305 ~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~-----------~n~l~~ 371 (716)
+..+++|++|++++|.+++... ..+..+++|+.|+++ +.+. +.++..+..+++|++|+++ .|.+++
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 7888999999999999875433 335789999999999 4443 3344455678999999999 466664
Q ss_pred ccC-cccCCCCCCcEEEccCCcccccCCcccCC-CCCCCEEEcc----CCcCCcc-----CchhhcCcCCCCEEECcCCc
Q 041300 372 EIP-KELGKLNSLTKLILRGNQLTGRLPTEIGS-LIELEYLDFS----ANKFNNS-----VPESLGNLLKLHYLGLSNNQ 440 (716)
Q Consensus 372 ~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls----~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~ 440 (716)
... .....+++|++|+++.|++++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|+.|++++|.
T Consensus 368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 322 23456899999999999998776666655 8899999996 7788763 34446789999999998644
Q ss_pred --CcccCChhhh-CCCCCCEEECCCCcCccc-cchhccCCCCCCEEECcCCcCccc-CCcCCcCCCCCCEEEccCCcccc
Q 041300 441 --FVLELPKELE-KLVQLSELDASHNLFGGE-IPFQICSLKSLEKLNLSHNNLSGL-IPNCFEGMHGLSIIDISDNQLQG 515 (716)
Q Consensus 441 --l~~~~~~~~~-~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~-~~~~~~~~~~L~~l~ls~N~l~~ 515 (716)
++...+..+. .+++|+.|++++|.+++. ++..+..+++|++|++++|.++.. ++..+..+++|+.|++++|+++.
T Consensus 448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 6655444444 478999999999999863 455668899999999999998754 34445678999999999999875
Q ss_pred c
Q 041300 516 P 516 (716)
Q Consensus 516 ~ 516 (716)
.
T Consensus 528 ~ 528 (592)
T 3ogk_B 528 T 528 (592)
T ss_dssp T
T ss_pred H
Confidence 3
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=8.3e-29 Score=256.51 Aligned_cols=257 Identities=19% Similarity=0.156 Sum_probs=164.6
Q ss_pred ccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccC
Q 041300 239 LTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSR 318 (716)
Q Consensus 239 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~ 318 (716)
++..+++.+.+.......+...+.|+.|++++|.+++..|..|.++++|+.|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455566666655444444455566667777776666666666777777777777777765543 66677777777777
Q ss_pred CccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCC
Q 041300 319 NNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP 398 (716)
Q Consensus 319 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 398 (716)
|.+++..+ .++|++|++++|++++..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus 90 n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEEE-----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CccccccC-----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 77665432 26677777777777655433 24567777777777766656666667777777777777766555
Q ss_pred ccc-CCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCC
Q 041300 399 TEI-GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLK 477 (716)
Q Consensus 399 ~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~ 477 (716)
..+ ..+++|++|+|++|.+++. + ....+++|++|++++|++++ +|..+..+++|+.|++++|.++ .+|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 554 3566777777777777644 2 22236667777777777764 3334666677777777777776 3555666667
Q ss_pred CCCEEECcCCcCc-ccCCcCCcCCCCCCEEEcc
Q 041300 478 SLEKLNLSHNNLS-GLIPNCFEGMHGLSIIDIS 509 (716)
Q Consensus 478 ~L~~L~ls~N~l~-~~~~~~~~~~~~L~~l~ls 509 (716)
+|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 7777777777776 5555666666666666666
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=4.3e-27 Score=262.73 Aligned_cols=86 Identities=29% Similarity=0.342 Sum_probs=45.8
Q ss_pred CCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEEC
Q 041300 357 SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGL 436 (716)
Q Consensus 357 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 436 (716)
++|+.|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|+|++|.|+ .+|..+.++++|+.|+|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 445555555555543 33 23345555555555555 2333 3455666666666665 44555566666666666
Q ss_pred cCCcCcccCChhhhC
Q 041300 437 SNNQFVLELPKELEK 451 (716)
Q Consensus 437 s~N~l~~~~~~~~~~ 451 (716)
++|++++..|..+..
T Consensus 292 ~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 292 EGNPLSERTLQALRE 306 (622)
T ss_dssp CSCCCCHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHh
Confidence 666666555555443
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.8e-28 Score=250.88 Aligned_cols=252 Identities=22% Similarity=0.195 Sum_probs=134.7
Q ss_pred CCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCcc-ccCcccc-------CCCCccEEEecCCcccccCCccc--
Q 041300 212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTG-YLPHNIC-------RGGLLEAFIVSENHFQGTIPESL-- 281 (716)
Q Consensus 212 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~-------~~~~L~~L~l~~n~l~~~~p~~l-- 281 (716)
..++|+.|++++|.+ .+|..+... ++.|++++|.++. ..+..+. .++.|+.|++++|++++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI-IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH-HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH-HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 344777888888888 556544433 7888888888743 3333332 35555555555555555555544
Q ss_pred ccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCE
Q 041300 282 RNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQA 361 (716)
Q Consensus 282 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 361 (716)
..+++|+.|++++|++++. |..+..++ ...+++|++|++++|++++..|..++.+++|++
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~-------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQ-------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHH-------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHH-------------------HhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence 4555555555555555544 33333330 000144445555555544444444455555555
Q ss_pred EEccCCccccc--cCccc--CCCCCCcEEEccCCcccc---cCCcccCCCCCCCEEEccCCcCCccCc-hhhcCcCCCCE
Q 041300 362 LDLSLNHIVGE--IPKEL--GKLNSLTKLILRGNQLTG---RLPTEIGSLIELEYLDFSANKFNNSVP-ESLGNLLKLHY 433 (716)
Q Consensus 362 L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~ 433 (716)
|++++|++.+. .+..+ ..+++|++|++++|++++ .....+..+++|++|+|++|.+++..| ..+..+++|++
T Consensus 178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence 55555554432 12222 445555555555555541 111222345556666666666655443 33444556666
Q ss_pred EECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcc
Q 041300 434 LGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG 491 (716)
Q Consensus 434 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 491 (716)
|+|++|+++ .+|..+. ++|++||+++|++++. |. +..+++|+.|++++|++++
T Consensus 258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred EECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 666666665 4454443 5666666666666654 44 6666677777777776654
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.8e-28 Score=251.53 Aligned_cols=265 Identities=22% Similarity=0.210 Sum_probs=217.0
Q ss_pred cCEEEeeCCcCcccCCCccccc-cccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccC
Q 041300 216 LKSLGLMDNHLSGSIPPSFGNS-MLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNG 294 (716)
Q Consensus 216 L~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 294 (716)
++..+++.+.+....+..+... +|++|++++|.+++..+..+..++.|+.|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4444555555543333333322 68888888888888777788888899999999999887654 88899999999999
Q ss_pred CcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccC
Q 041300 295 NNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP 374 (716)
Q Consensus 295 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 374 (716)
|++++..+ .++|++|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++..+
T Consensus 90 n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELLV-----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEEE-----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CccccccC-----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 99886542 389999999999999876544 5789999999999998888889999999999999999998777
Q ss_pred cccC-CCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCC
Q 041300 375 KELG-KLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLV 453 (716)
Q Consensus 375 ~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 453 (716)
..+. .+++|++|++++|++++. + ....+++|++|+|++|.+++. |..+..+++|+.|++++|+++ .+|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 7764 789999999999999865 3 344589999999999999964 455899999999999999998 4678899999
Q ss_pred CCCEEECCCCcCc-cccchhccCCCCCCEEECcC-CcCcccCC
Q 041300 454 QLSELDASHNLFG-GEIPFQICSLKSLEKLNLSH-NNLSGLIP 494 (716)
Q Consensus 454 ~L~~L~ls~N~l~-~~~p~~~~~l~~L~~L~ls~-N~l~~~~~ 494 (716)
+|+.|++++|.+. +.+|..+..+++|+.+++++ +.+++..|
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 9999999999998 77888999999999999984 45555443
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=5.4e-25 Score=245.81 Aligned_cols=262 Identities=24% Similarity=0.251 Sum_probs=207.4
Q ss_pred ccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccC
Q 041300 215 NLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNG 294 (716)
Q Consensus 215 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 294 (716)
+++.|++++|.++ .+|..+. .+|+.|++++|.++... . .+++|+.|++++|++++ +|. .+++|+.|++++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCSCCC-C---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCCCCC-C---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcC
Confidence 5888999999888 5566554 68999999999988543 3 46789999999999885 444 678899999999
Q ss_pred CcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccC
Q 041300 295 NNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP 374 (716)
Q Consensus 295 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 374 (716)
|++++... .+++|+.|++++|++++. |. .+++|++|++++|++++. |. .+++|+.|++++|.+++ +|
T Consensus 111 N~l~~l~~----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 111 NPLTHLPA----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp CCCCCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC
T ss_pred CcCCCCCC----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc
Confidence 99987544 568899999999998864 33 248899999999998853 33 35789999999999985 55
Q ss_pred cccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCC
Q 041300 375 KELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQ 454 (716)
Q Consensus 375 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 454 (716)
..+++|+.|++++|++++ +|. .+++|+.|++++|.++. +|. .+++|+.|++++|++++ +| ..+++
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~ 242 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSE 242 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred ---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCc
Confidence 456889999999999985 444 34789999999999984 443 24789999999999985 55 45678
Q ss_pred CCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCC
Q 041300 455 LSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPN 519 (716)
Q Consensus 455 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~ 519 (716)
|+.|++++|.++. +|. .+++|+.|++++|+|+ .+|..|..+++|+.|++++|++++.+|.
T Consensus 243 L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 243 LKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 9999999999984 554 5688999999999998 5577889999999999999999876553
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.6e-25 Score=227.05 Aligned_cols=212 Identities=26% Similarity=0.230 Sum_probs=173.5
Q ss_pred CCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEc
Q 041300 309 PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLIL 388 (716)
Q Consensus 309 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 388 (716)
++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46777788877777776667777788888888888887776677788888888888888888777777888888888888
Q ss_pred cCCcccccCCcccCCCCCCCEEEccCCcCCcc-CchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCC----EEECCCC
Q 041300 389 RGNQLTGRLPTEIGSLIELEYLDFSANKFNNS-VPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLS----ELDASHN 463 (716)
Q Consensus 389 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~ls~N 463 (716)
++|++++..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+.+|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 88888876666788888888888888888764 578888889999999999998877777777776666 8999999
Q ss_pred cCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCcc
Q 041300 464 LFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNST 521 (716)
Q Consensus 464 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~~ 521 (716)
.+++..+..+. ..+|+.|++++|++++..+..|..+++|+.|++++|++.+..|...
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 99866655554 4589999999999998888889999999999999999999877553
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.6e-26 Score=250.39 Aligned_cols=237 Identities=20% Similarity=0.163 Sum_probs=193.9
Q ss_pred CCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEE
Q 041300 259 RGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTL 338 (716)
Q Consensus 259 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 338 (716)
..+.|+.|++++|.+++..|..|..+++|+.|+|++|.+++..+ +..+++|++|+|++|.+++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34478999999999998888888999999999999999887665 8888999999999998886543 2789999
Q ss_pred EcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccC-CCCCCCEEEccCCcC
Q 041300 339 NVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIG-SLIELEYLDFSANKF 417 (716)
Q Consensus 339 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l 417 (716)
++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999998876554 457889999999999888888888889999999999999887777775 788999999999998
Q ss_pred CccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc-ccCCcC
Q 041300 418 NNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS-GLIPNC 496 (716)
Q Consensus 418 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~~~~ 496 (716)
++..+ +..+++|+.|+|++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 86633 34588899999999999864 4458888899999999999985 6777888899999999999887 556666
Q ss_pred CcCCCCCCEEEcc
Q 041300 497 FEGMHGLSIIDIS 509 (716)
Q Consensus 497 ~~~~~~L~~l~ls 509 (716)
+..++.|+.++++
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 7666666666654
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=5e-25 Score=222.55 Aligned_cols=217 Identities=21% Similarity=0.221 Sum_probs=166.0
Q ss_pred CCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCC
Q 041300 38 SPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP 117 (716)
Q Consensus 38 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 117 (716)
+.|.|.|+.|...+.++.++++++++.. ++. .+ .+++++|+|++|.+....+..|.++++|++|+|++|.++...+
T Consensus 3 ~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 3 ALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCBGGGTCSBEEETTTTEEECTTSCCSS-CCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred ccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 7899999999866677899999999873 432 22 2679999999999998888889999999999999999997777
Q ss_pred ccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCC
Q 041300 118 AEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKF 197 (716)
Q Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 197 (716)
..|..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..+
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----- 153 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF----- 153 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc-----
Confidence 778999999999999999998777788999999999999999998888889999999999999998875443333
Q ss_pred CceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccC
Q 041300 198 LFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTI 277 (716)
Q Consensus 198 L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 277 (716)
..+++|++|++++|.+++..+..| ..++.|+.|++++|.+++..
T Consensus 154 -------------~~l~~L~~L~L~~n~l~~~~~~~~-----------------------~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 154 -------------DKLTSLKELRLYNNQLKRVPEGAF-----------------------DKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp -------------TTCTTCCEEECCSSCCSCCCTTTT-----------------------TTCTTCCEEECCSSCCSCCC
T ss_pred -------------cCCcccceeEecCCcCcEeChhHh-----------------------ccCCCcCEEECCCCcCCcCC
Confidence 344467777777777665444333 33444555555555555444
Q ss_pred CcccccCCCCcEEEccCCcCCC
Q 041300 278 PESLRNCTSLIRVRLNGNNLTG 299 (716)
Q Consensus 278 p~~l~~l~~L~~L~l~~n~l~~ 299 (716)
+..+..+++|+.|++++|.+..
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBCC
T ss_pred HHHhccccCCCEEEecCCCeeC
Confidence 4555666666777777666553
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=8e-25 Score=221.98 Aligned_cols=207 Identities=25% Similarity=0.221 Sum_probs=175.8
Q ss_pred CCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEc
Q 041300 285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDL 364 (716)
Q Consensus 285 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 364 (716)
++|+.|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46888888888888877778888888888888888888877778888889999999999888887788888899999999
Q ss_pred cCCccccccCcccCCCCCCcEEEccCCccccc-CCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCC----EEECcCC
Q 041300 365 SLNHIVGEIPKELGKLNSLTKLILRGNQLTGR-LPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLH----YLGLSNN 439 (716)
Q Consensus 365 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N 439 (716)
++|.+.+..+..+..+++|++|++++|++++. +|..+..+++|++|++++|.+++..+..+..+.+|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99998877666788889999999999998864 578888999999999999999887777787777777 8999999
Q ss_pred cCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCccc
Q 041300 440 QFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL 492 (716)
Q Consensus 440 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 492 (716)
++.+..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 99876665554 44899999999999977777788999999999999999864
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=3.2e-28 Score=275.51 Aligned_cols=427 Identities=17% Similarity=0.170 Sum_probs=223.0
Q ss_pred CCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccc---cCcc------------cccCCCCC
Q 041300 38 SPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFG---TIPS------------QIGNLTKL 102 (716)
Q Consensus 38 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~---~~~~------------~~~~l~~L 102 (716)
.|+.|.++.. .....+++.+.... .+...+..+++|++|+++++.... ..|. .+..+++|
T Consensus 33 vck~W~~~~~---~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L 107 (594)
T 2p1m_B 33 VCKSWYEIER---WCRRKVFIGNCYAV--SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL 107 (594)
T ss_dssp SCHHHHHHHH---HHCCEEEESSTTSS--CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhh---hhceEEeecccccc--CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence 4668998832 12345566544321 112345677889999999876321 1121 13457788
Q ss_pred CEEECcCCcCcccCCcccc-CCCCCCEEEcccc-cCccC-CCccccCCCCCceeecccccccCCCCcccc----CCcCCc
Q 041300 103 SYISLDSNQLSGKIPAEVG-LLTHLKVLSFQFN-ELDGS-IPPEVCQLSSIEELFLYSNHLNGSLPPFLG----NLSNIV 175 (716)
Q Consensus 103 ~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l~~L~ 175 (716)
++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+..+++|++|+|++|.+++..+..+. .+++|+
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~ 187 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence 8888888888766666664 6788888888887 44432 333345778888888888887765544443 556788
Q ss_pred EEEeeccc--ccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCcccc-ccccEEEccCC-----
Q 041300 176 RLYINNNS--LSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGN-SMLTWLTLSGN----- 247 (716)
Q Consensus 176 ~L~L~~n~--l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n----- 247 (716)
+|++++|. ++......+ ...+++|++|++++|...+.++..+.. .+|+.|+++.+
T Consensus 188 ~L~l~~~~~~~~~~~l~~l-----------------~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 250 (594)
T 2p1m_B 188 SLNISCLASEVSFSALERL-----------------VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250 (594)
T ss_dssp EEECTTCCSCCCHHHHHHH-----------------HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCC
T ss_pred EEEecccCCcCCHHHHHHH-----------------HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccc
Confidence 88887775 221111111 112345555665555211112222222 24555554332
Q ss_pred --cCccccCccccCCCCccEEE-ecCCcccccCCcccccCCCCcEEEccCCcCCCccc-hhhCCCCCCCEEEccCCcccc
Q 041300 248 --HFTGYLPHNICRGGLLEAFI-VSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNIS-EALGLYPNLTFIDLSRNNFYG 323 (716)
Q Consensus 248 --~l~~~~~~~~~~~~~L~~L~-l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~ 323 (716)
.+.+. +..+..++.|+.+. +.... ...++..+..+++|+.|++++|.++.... ..+..+++|++|++++| +..
T Consensus 251 ~~~~~~l-~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~ 327 (594)
T 2p1m_B 251 PDVYSGL-SVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED 327 (594)
T ss_dssp HHHHHHH-HHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH
T ss_pred hhhHHHH-HHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH
Confidence 23322 22445556666662 22221 12333444456677777777766553322 22445667777777666 332
Q ss_pred c-cCCCCCCCCCCCEEEccc---------CcCcccCccccc-CCCCCCEEEccCCccccccCcccC-CCCCCcEEEcc--
Q 041300 324 E-ISSNWGKCPKLGTLNVSM---------NNITGGIPREIG-NMSQLQALDLSLNHIVGEIPKELG-KLNSLTKLILR-- 389 (716)
Q Consensus 324 ~-~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~-- 389 (716)
. ++.....+++|+.|+++. +.+++.....+. ++++|+.|++..|.+++..+..+. .+++|+.|+++
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence 1 111122356666666632 334332222222 356666666666666554443333 35666666666
Q ss_pred C----Cccccc-----CCcccCCCCCCCEEEccCCcCCccCchhhcC-cCCCCEEECcCCcCcccCChhh-hCCCCCCEE
Q 041300 390 G----NQLTGR-----LPTEIGSLIELEYLDFSANKFNNSVPESLGN-LLKLHYLGLSNNQFVLELPKEL-EKLVQLSEL 458 (716)
Q Consensus 390 ~----N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L 458 (716)
+ |.+++. ++..+..+++|+.|+|++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L 486 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKL 486 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEE
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEE
Confidence 2 334311 111134455666666655 444433333333 5566666666666544333333 445566666
Q ss_pred ECCCCcCccccch-hccCCCCCCEEECcCCcCc
Q 041300 459 DASHNLFGGEIPF-QICSLKSLEKLNLSHNNLS 490 (716)
Q Consensus 459 ~ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~ 490 (716)
++++|.+++..+. ....+++|+.|++++|+++
T Consensus 487 ~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 487 EIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred ECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 6666665433332 2233556666666666553
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.6e-24 Score=217.27 Aligned_cols=205 Identities=21% Similarity=0.272 Sum_probs=139.1
Q ss_pred CCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccC
Q 041300 311 LTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG 390 (716)
Q Consensus 311 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 390 (716)
.+.++++++.++. +|..+. ++++.|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4445555555543 222221 3455666666665555555566666666666666666644444456666666666666
Q ss_pred CcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccc
Q 041300 391 NQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIP 470 (716)
Q Consensus 391 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p 470 (716)
|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 66665555556667777777777777776666667777777777777777776555567777788888888888877666
Q ss_pred hhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300 471 FQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP 518 (716)
Q Consensus 471 ~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p 518 (716)
..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 677788888888888888887777778888888888888888877654
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=8.5e-28 Score=272.06 Aligned_cols=417 Identities=14% Similarity=0.089 Sum_probs=289.6
Q ss_pred cEEECCCCCccccCcccccCCCCCCEEECcCCcCcc---cCC------------ccccCCCCCCEEEcccccCccCCCcc
Q 041300 79 VHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSG---KIP------------AEVGLLTHLKVLSFQFNELDGSIPPE 143 (716)
Q Consensus 79 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~p------------~~~~~l~~L~~L~L~~N~l~~~~~~~ 143 (716)
+.++++..... .....+..+++|++|+|+++.... ..| ..+..+++|++|+|++|.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 35566544322 222446778999999999976321 112 12346789999999999988766666
Q ss_pred cc-CCCCCceeecccc-cccCC-CCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEE
Q 041300 144 VC-QLSSIEELFLYSN-HLNGS-LPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLG 220 (716)
Q Consensus 144 ~~-~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~ 220 (716)
+. .+++|++|+|++| .++.. ++..+.++++|++|++++|.+++..+..+..+ ...+++|++|+
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~--------------~~~~~~L~~L~ 190 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF--------------PDTYTSLVSLN 190 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS--------------CTTCCCCCEEE
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH--------------hhcCCcCcEEE
Confidence 65 6899999999998 55432 34445578999999999998876554444322 23566889999
Q ss_pred eeCCc--Cccc-CCCcc-ccccccEEEccCCcCccccCccccCCCCccEEEecCC-------cccccCCcccccCCCCcE
Q 041300 221 LMDNH--LSGS-IPPSF-GNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSEN-------HFQGTIPESLRNCTSLIR 289 (716)
Q Consensus 221 l~~n~--l~~~-~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n-------~l~~~~p~~l~~l~~L~~ 289 (716)
+++|. +... ++... ..++|+.|++++|...+.++..+..++.|+.|.++.+ .+.+ ++..+.++++|+.
T Consensus 191 l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~ 269 (594)
T 2p1m_B 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRC 269 (594)
T ss_dssp CTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCE
T ss_pred ecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCccc
Confidence 98886 2111 11111 1257999999999433336677778889999996544 3443 3346788999999
Q ss_pred E-EccCCcCCCccchhhCCCCCCCEEEccCCccccccC-CCCCCCCCCCEEEcccCcCccc-CcccccCCCCCCEEEcc-
Q 041300 290 V-RLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEIS-SNWGKCPKLGTLNVSMNNITGG-IPREIGNMSQLQALDLS- 365 (716)
Q Consensus 290 L-~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~- 365 (716)
| .+.+... ...+..+..+++|++|++++|.+++... ..+..+++|+.|++++| ++.. ++.....+++|+.|++.
T Consensus 270 Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 270 LSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp EECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEec
Confidence 8 3433322 2344444567899999999999775432 23567899999999988 4422 23333458999999993
Q ss_pred --------CCccccccCcccC-CCCCCcEEEccCCcccccCCcccC-CCCCCCEEEcc--C----CcCCcc-----Cchh
Q 041300 366 --------LNHIVGEIPKELG-KLNSLTKLILRGNQLTGRLPTEIG-SLIELEYLDFS--A----NKFNNS-----VPES 424 (716)
Q Consensus 366 --------~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~-----~~~~ 424 (716)
.+.+++.....+. .+++|+.|.+..|.+++.....+. .+++|+.|+++ + |.+++. ++..
T Consensus 348 ~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l 427 (594)
T 2p1m_B 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427 (594)
T ss_dssp SCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH
T ss_pred CcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHH
Confidence 3556543333333 478999999999999876555554 58899999999 4 566532 2223
Q ss_pred hcCcCCCCEEECcCCcCcccCChhhhC-CCCCCEEECCCCcCccccchhc-cCCCCCCEEECcCCcCcccCCc-CCcCCC
Q 041300 425 LGNLLKLHYLGLSNNQFVLELPKELEK-LVQLSELDASHNLFGGEIPFQI-CSLKSLEKLNLSHNNLSGLIPN-CFEGMH 501 (716)
Q Consensus 425 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~~~-~~~~~~ 501 (716)
+..+++|+.|++++ .++...+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.++..... ....++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 67789999999987 666555555555 8899999999999987666555 6689999999999999654433 445588
Q ss_pred CCCEEEccCCccc
Q 041300 502 GLSIIDISDNQLQ 514 (716)
Q Consensus 502 ~L~~l~ls~N~l~ 514 (716)
+|+.|++++|+++
T Consensus 507 ~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 507 TMRSLWMSSCSVS 519 (594)
T ss_dssp GSSEEEEESSCCB
T ss_pred CCCEEeeeCCCCC
Confidence 9999999999884
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=9.2e-24 Score=215.08 Aligned_cols=203 Identities=23% Similarity=0.184 Sum_probs=133.2
Q ss_pred CCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEE
Q 041300 307 LYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKL 386 (716)
Q Consensus 307 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 386 (716)
.+++++++++++|.++.. |..+ .++++.|++++|.+++..+..|..+++|++|++++|.+++..+. ..+++|+.|
T Consensus 8 ~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 344455555555555432 2222 14555666666666655555666666666666666666543322 556667777
Q ss_pred EccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCc
Q 041300 387 ILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFG 466 (716)
Q Consensus 387 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 466 (716)
++++|+++ .+|..+..+++|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 77777766 45666667777777777777777666666777777777777777777666666777777777777777777
Q ss_pred cccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccccc
Q 041300 467 GEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP 516 (716)
Q Consensus 467 ~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~ 516 (716)
+..+..+..+++|+.|++++|+|+. +|..+..+.+|+.+++++|++.+.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCc
Confidence 6666666777888888888888874 455555667788888888887654
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.8e-23 Score=212.92 Aligned_cols=204 Identities=25% Similarity=0.202 Sum_probs=156.8
Q ss_pred cccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCC
Q 041300 281 LRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQ 360 (716)
Q Consensus 281 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 360 (716)
+.++++++.+++++|.++..++.. .++++.|++++|.+++..+..|..+++|+.|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 456667777777777777544332 25677778888777777777777778888888888877754332 6778888
Q ss_pred EEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCc
Q 041300 361 ALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQ 440 (716)
Q Consensus 361 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 440 (716)
+|++++|+++ .+|..+..+++|+.|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 8888888887 567777788888888888888887666778888888888888888887777777888888888888888
Q ss_pred CcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcc
Q 041300 441 FVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG 491 (716)
Q Consensus 441 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 491 (716)
++...+..|..+++|+.|++++|+++ .+|..+..+++|+.+++++|.+..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 88666666778888888888888888 567777777888888888888763
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=5.5e-24 Score=215.07 Aligned_cols=202 Identities=22% Similarity=0.209 Sum_probs=125.4
Q ss_pred CCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEE
Q 041300 308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI 387 (716)
Q Consensus 308 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 387 (716)
+++|+.|++++|.+... ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 44455555555554422 2344555555555555555542 2455666666666666666655555556666666666
Q ss_pred ccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcc
Q 041300 388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG 467 (716)
Q Consensus 388 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 467 (716)
+++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 66666665555556666666666666666665555556666667777777776665555556666777777777777776
Q ss_pred ccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCCc
Q 041300 468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPNS 520 (716)
Q Consensus 468 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~~ 520 (716)
..|..+..+++|+.|++++|.+.+. +++++.++++.|.++|.+|..
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 6666666777777777777766543 345667777777777776653
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=4.4e-25 Score=232.98 Aligned_cols=251 Identities=20% Similarity=0.241 Sum_probs=174.8
Q ss_pred EEecCCcccccCCcccccCCCCcEEEccCCcCCCccc----hhhCCCC-CCCEEEccCCccccccCCCCCCC-----CCC
Q 041300 266 FIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNIS----EALGLYP-NLTFIDLSRNNFYGEISSNWGKC-----PKL 335 (716)
Q Consensus 266 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~L 335 (716)
+.++.|.+++.+|..+...++|+.|++++|.++...+ ..+..++ +|++|+|++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555665666555555667777777777776655 5666666 77777777777776655555443 778
Q ss_pred CEEEcccCcCcccCcccc----cCC-CCCCEEEccCCccccccCccc----CC-CCCCcEEEccCCcccccCC----ccc
Q 041300 336 GTLNVSMNNITGGIPREI----GNM-SQLQALDLSLNHIVGEIPKEL----GK-LNSLTKLILRGNQLTGRLP----TEI 401 (716)
Q Consensus 336 ~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~L~~N~l~~~~~----~~~ 401 (716)
++|+|++|++++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|+|++|++++..+ ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 888888888776665543 333 788888888888876554443 33 2578888888888874332 333
Q ss_pred CCCC-CCCEEEccCCcCCccCchhhc----Cc-CCCCEEECcCCcCccc----CChhhhCC-CCCCEEECCCCcCccccc
Q 041300 402 GSLI-ELEYLDFSANKFNNSVPESLG----NL-LKLHYLGLSNNQFVLE----LPKELEKL-VQLSELDASHNLFGGEIP 470 (716)
Q Consensus 402 ~~l~-~L~~L~Ls~N~l~~~~~~~~~----~l-~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~ls~N~l~~~~p 470 (716)
..++ +|++|+|++|.+++..+..+. .+ ++|++|+|++|.+... ++..+... ++|++||+++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4554 888888888888876665444 34 5899999999988753 44455553 489999999999887554
Q ss_pred ----hhccCCCCCCEEECcCCcCcccC-------CcCCcCCCCCCEEEccCCccccc
Q 041300 471 ----FQICSLKSLEKLNLSHNNLSGLI-------PNCFEGMHGLSIIDISDNQLQGP 516 (716)
Q Consensus 471 ----~~~~~l~~L~~L~ls~N~l~~~~-------~~~~~~~~~L~~l~ls~N~l~~~ 516 (716)
..+..+++|+.|++++|.+.... +..+..+++|+.||+++|++.+.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 34567788999999999854332 34677888899999999998764
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3.2e-23 Score=209.41 Aligned_cols=209 Identities=21% Similarity=0.212 Sum_probs=156.5
Q ss_pred ccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCE
Q 041300 282 RNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQA 361 (716)
Q Consensus 282 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 361 (716)
..+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3556666677776666532 2356667777777777777653 35667777777777777777766666777778888
Q ss_pred EEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcC
Q 041300 362 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQF 441 (716)
Q Consensus 362 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 441 (716)
|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 88888887766666677788888888888888766666677788888888888888877777778888888888888888
Q ss_pred cccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCC
Q 041300 442 VLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMH 501 (716)
Q Consensus 442 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~ 501 (716)
++..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|+++|.+|..+..+.
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 87777777888888888888887763 356788888888999888888776554
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=216.54 Aligned_cols=224 Identities=16% Similarity=0.163 Sum_probs=176.8
Q ss_pred CCcEEEccCCcCCCccch---hhCCCCCCCEEEccCCccccccCCCC--CCCCCCCEEEcccCcCcccCc----ccccCC
Q 041300 286 SLIRVRLNGNNLTGNISE---ALGLYPNLTFIDLSRNNFYGEISSNW--GKCPKLGTLNVSMNNITGGIP----REIGNM 356 (716)
Q Consensus 286 ~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l 356 (716)
.++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466777777666532111 11224668999999999888888777 888899999999999887544 344578
Q ss_pred CCCCEEEccCCccccccCcccCCCCCCcEEEccCCccccc--C--CcccCCCCCCCEEEccCCcCCccCch----hhcCc
Q 041300 357 SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGR--L--PTEIGSLIELEYLDFSANKFNNSVPE----SLGNL 428 (716)
Q Consensus 357 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~--~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l 428 (716)
++|++|++++|++.+..+..+..+++|++|+|++|++.+. + +..+..+++|++|+|++|.++. ++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 8999999999999888888899999999999999987642 2 2334688899999999999973 332 35778
Q ss_pred CCCCEEECcCCcCcccCChhhhCC---CCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCE
Q 041300 429 LKLHYLGLSNNQFVLELPKELEKL---VQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSI 505 (716)
Q Consensus 429 ~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~ 505 (716)
++|++|+|++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|+|++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 999999999999998778777776 69999999999999 5676664 7999999999999975 33 678899999
Q ss_pred EEccCCcccc
Q 041300 506 IDISDNQLQG 515 (716)
Q Consensus 506 l~ls~N~l~~ 515 (716)
|++++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999874
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=6.7e-23 Score=202.95 Aligned_cols=196 Identities=15% Similarity=0.165 Sum_probs=116.2
Q ss_pred CCCEEEccCCccccccCCCCCCCCCCCEEEcccCc-CcccCcccccCCCCCCEEEccC-CccccccCcccCCCCCCcEEE
Q 041300 310 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN-ITGGIPREIGNMSQLQALDLSL-NHIVGEIPKELGKLNSLTKLI 387 (716)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 387 (716)
++++|++++|++++..+..|..+++|++|++++|+ ++...+..|.++++|++|++++ |++++..+..|..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555555455555555555555554 5544444555566666666665 566544445555666666666
Q ss_pred ccCCcccccCCcccCCCCCCC---EEEccCC-cCCccCchhhcCcCCCC-EEECcCCcCcccCChhhhCCCCCCEEECCC
Q 041300 388 LRGNQLTGRLPTEIGSLIELE---YLDFSAN-KFNNSVPESLGNLLKLH-YLGLSNNQFVLELPKELEKLVQLSELDASH 462 (716)
Q Consensus 388 L~~N~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~ 462 (716)
+++|++++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ .|++++|+++...+..+.. ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 66666653 343 55555555 6666666 66655555566666666 6666666666333333433 5667777777
Q ss_pred Cc-CccccchhccCC-CCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCC
Q 041300 463 NL-FGGEIPFQICSL-KSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDN 511 (716)
Q Consensus 463 N~-l~~~~p~~~~~l-~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N 511 (716)
|+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 73 665555666666 6777777777777654433 4556667776654
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.1e-22 Score=201.53 Aligned_cols=196 Identities=19% Similarity=0.155 Sum_probs=150.9
Q ss_pred CCcEEEccCCcCCCccchhhCCCCCCCEEEccCCc-cccccCCCCCCCCCCCEEEccc-CcCcccCcccccCCCCCCEEE
Q 041300 286 SLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNN-FYGEISSNWGKCPKLGTLNVSM-NNITGGIPREIGNMSQLQALD 363 (716)
Q Consensus 286 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 363 (716)
+|+.|++++|++++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67788888888877777777778888888888886 7766666777888888888887 888777667788888888888
Q ss_pred ccCCccccccCcccCCCCCCc---EEEccCC-cccccCCcccCCCCCCC-EEEccCCcCCccCchhhcCcCCCCEEECcC
Q 041300 364 LSLNHIVGEIPKELGKLNSLT---KLILRGN-QLTGRLPTEIGSLIELE-YLDFSANKFNNSVPESLGNLLKLHYLGLSN 438 (716)
Q Consensus 364 L~~n~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 438 (716)
+++|++++ +|. +..+++|+ .|++++| ++++..+..|.++++|+ .|++++|.++...+..|.. ++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 88888875 555 77777777 8888888 88766666788888888 8888888887444444554 7888888888
Q ss_pred Cc-CcccCChhhhCC-CCCCEEECCCCcCccccchhccCCCCCCEEECcCC
Q 041300 439 NQ-FVLELPKELEKL-VQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHN 487 (716)
Q Consensus 439 N~-l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N 487 (716)
|+ ++...+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 85 876667778888 8888888888888754333 5678888888776
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.1e-24 Score=230.22 Aligned_cols=240 Identities=22% Similarity=0.262 Sum_probs=181.6
Q ss_pred CCcccccCCCCcEEEccCCcCCCccc----hhhCCCCCCCEEEccCCc---cccccCCCC-------CCCCCCCEEEccc
Q 041300 277 IPESLRNCTSLIRVRLNGNNLTGNIS----EALGLYPNLTFIDLSRNN---FYGEISSNW-------GKCPKLGTLNVSM 342 (716)
Q Consensus 277 ~p~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~Ls~n~---l~~~~~~~~-------~~l~~L~~L~L~~ 342 (716)
++..+..+++|+.|++++|.++...+ ..+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44556677778888888887776533 335677888888888753 333334333 5778888888888
Q ss_pred CcCcc----cCcccccCCCCCCEEEccCCccccccCcccC----CC---------CCCcEEEccCCccc-ccCC---ccc
Q 041300 343 NNITG----GIPREIGNMSQLQALDLSLNHIVGEIPKELG----KL---------NSLTKLILRGNQLT-GRLP---TEI 401 (716)
Q Consensus 343 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~L~~N~l~-~~~~---~~~ 401 (716)
|.+++ .+|..+..+++|++|+|++|.+++..+..+. .+ ++|++|++++|+++ +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 88886 4666778888999999999988754443333 33 78999999999887 3333 356
Q ss_pred CCCCCCCEEEccCCcCCc-----cCchhhcCcCCCCEEECcCCcCc----ccCChhhhCCCCCCEEECCCCcCccc----
Q 041300 402 GSLIELEYLDFSANKFNN-----SVPESLGNLLKLHYLGLSNNQFV----LELPKELEKLVQLSELDASHNLFGGE---- 468 (716)
Q Consensus 402 ~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~ls~N~l~~~---- 468 (716)
..+++|+.|+|++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|+.|+|++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 678899999999998873 33447788899999999999986 56778888899999999999999866
Q ss_pred cchhc--cCCCCCCEEECcCCcCcc----cCCcCC-cCCCCCCEEEccCCccccc
Q 041300 469 IPFQI--CSLKSLEKLNLSHNNLSG----LIPNCF-EGMHGLSIIDISDNQLQGP 516 (716)
Q Consensus 469 ~p~~~--~~l~~L~~L~ls~N~l~~----~~~~~~-~~~~~L~~l~ls~N~l~~~ 516 (716)
++..+ +.+++|+.|++++|+++. .+|..+ ..+++|+.|++++|++++.
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 45566 348999999999999987 466666 5689999999999998754
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.2e-22 Score=199.58 Aligned_cols=180 Identities=23% Similarity=0.240 Sum_probs=120.9
Q ss_pred CCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccC
Q 041300 335 LGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSA 414 (716)
Q Consensus 335 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 414 (716)
.+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 445555555555 2333332 4566666666666655555666666666666666666665555566666677777777
Q ss_pred CcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCC
Q 041300 415 NKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIP 494 (716)
Q Consensus 415 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~ 494 (716)
|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 77666656666667777777777777765555556677777777777777776666667777778888888888777777
Q ss_pred cCCcCCCCCCEEEccCCcccccC
Q 041300 495 NCFEGMHGLSIIDISDNQLQGPV 517 (716)
Q Consensus 495 ~~~~~~~~L~~l~ls~N~l~~~~ 517 (716)
..|..+++|+.|++++|++.+..
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTTS
T ss_pred HHHhCCCCCCEEEeeCCceeCCc
Confidence 77777788888888888877653
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=4.4e-24 Score=225.37 Aligned_cols=251 Identities=17% Similarity=0.144 Sum_probs=145.1
Q ss_pred EEccCCcCccccCccccCCCCccEEEecCCcccccCC----cccccCC-CCcEEEccCCcCCCccchhhCCC-----CCC
Q 041300 242 LTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIP----ESLRNCT-SLIRVRLNGNNLTGNISEALGLY-----PNL 311 (716)
Q Consensus 242 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~-----~~L 311 (716)
++++.|.+++.+|..+.....|+.|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3444444444444444444445555555555554444 4455555 66666666666665555444432 666
Q ss_pred CEEEccCCccccccCCCC----CCC-CCCCEEEcccCcCcccCccccc----C-CCCCCEEEccCCccccccC----ccc
Q 041300 312 TFIDLSRNNFYGEISSNW----GKC-PKLGTLNVSMNNITGGIPREIG----N-MSQLQALDLSLNHIVGEIP----KEL 377 (716)
Q Consensus 312 ~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~----~~~ 377 (716)
++|+|++|.+++..+..+ ..+ ++|++|++++|++++..+..+. . .++|++|++++|.+++..+ ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 666666666665444322 223 5677777777776655444332 2 2467777777777764332 233
Q ss_pred CCCC-CCcEEEccCCcccccCCccc----CCC-CCCCEEEccCCcCCcc----CchhhcC-cCCCCEEECcCCcCcccCC
Q 041300 378 GKLN-SLTKLILRGNQLTGRLPTEI----GSL-IELEYLDFSANKFNNS----VPESLGN-LLKLHYLGLSNNQFVLELP 446 (716)
Q Consensus 378 ~~l~-~L~~L~L~~N~l~~~~~~~~----~~l-~~L~~L~Ls~N~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~~ 446 (716)
..++ +|++|+|++|++++..+..+ ..+ ++|++|+|++|.+++. ++..+.. .++|++|+|++|+++...+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4444 67777777777765544333 233 4777777777777653 3334444 3477777777777765433
Q ss_pred ----hhhhCCCCCCEEECCCCcCcccc-------chhccCCCCCCEEECcCCcCccc
Q 041300 447 ----KELEKLVQLSELDASHNLFGGEI-------PFQICSLKSLEKLNLSHNNLSGL 492 (716)
Q Consensus 447 ----~~~~~l~~L~~L~ls~N~l~~~~-------p~~~~~l~~L~~L~ls~N~l~~~ 492 (716)
..+..+++|++|++++|.+.+.. +..+..+++|+.||+++|++...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 22355677777777777744332 33556677788888888887654
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.2e-23 Score=219.92 Aligned_cols=231 Identities=16% Similarity=0.168 Sum_probs=150.7
Q ss_pred CCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccc-cCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEE
Q 041300 285 TSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGE-ISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALD 363 (716)
Q Consensus 285 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 363 (716)
++++.|++++|.+.+..+.. ..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 56666666666666554443 3456677777777766544 555566667777777777776666666666777777777
Q ss_pred ccCC-ccccc-cCcccCCCCCCcEEEccCC-ccccc-CCcccCCCC-CCCEEEccCC--cCC-ccCchhhcCcCCCCEEE
Q 041300 364 LSLN-HIVGE-IPKELGKLNSLTKLILRGN-QLTGR-LPTEIGSLI-ELEYLDFSAN--KFN-NSVPESLGNLLKLHYLG 435 (716)
Q Consensus 364 L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~Ls~N--~l~-~~~~~~~~~l~~L~~L~ 435 (716)
+++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 7777 55542 4555666777777777777 66643 455566677 7777777777 444 34556666777888888
Q ss_pred CcCCc-CcccCChhhhCCCCCCEEECCCCc-CccccchhccCCCCCCEEECcCCcCcccCCcCCcCC-CCCCEEEccCCc
Q 041300 436 LSNNQ-FVLELPKELEKLVQLSELDASHNL-FGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGM-HGLSIIDISDNQ 512 (716)
Q Consensus 436 Ls~N~-l~~~~~~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~-~~L~~l~ls~N~ 512 (716)
+++|. ++...+..+..+++|++|++++|. +.......+..+++|+.|++++| ++ ...+..+ ..+..|++++|+
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEeccc
Confidence 88887 665666677777888888888874 32222235667888888888887 32 2233333 236666788888
Q ss_pred ccccCCCc
Q 041300 513 LQGPVPNS 520 (716)
Q Consensus 513 l~~~~p~~ 520 (716)
+++..|..
T Consensus 305 l~~~~~~~ 312 (336)
T 2ast_B 305 FTTIARPT 312 (336)
T ss_dssp SCCTTCSS
T ss_pred CccccCCc
Confidence 88776643
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=9.8e-24 Score=224.97 Aligned_cols=239 Identities=20% Similarity=0.204 Sum_probs=178.8
Q ss_pred ccccCCCCccEEEecCCcccccCC----cccccCCCCcEEEccCCc---CCCccchhh-------CCCCCCCEEEccCCc
Q 041300 255 HNICRGGLLEAFIVSENHFQGTIP----ESLRNCTSLIRVRLNGNN---LTGNISEAL-------GLYPNLTFIDLSRNN 320 (716)
Q Consensus 255 ~~~~~~~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~l~~n~---l~~~~~~~~-------~~~~~L~~L~Ls~n~ 320 (716)
..+...+.|+.|++++|.+....+ ..+..+++|+.|+|++|. +++.+|..+ ..+++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 334445566666666666665422 336677788888888753 334444433 677888888888888
Q ss_pred ccc----ccCCCCCCCCCCCEEEcccCcCcccCccccc----CC---------CCCCEEEccCCccc-cccC---cccCC
Q 041300 321 FYG----EISSNWGKCPKLGTLNVSMNNITGGIPREIG----NM---------SQLQALDLSLNHIV-GEIP---KELGK 379 (716)
Q Consensus 321 l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~-~~~~---~~~~~ 379 (716)
+++ .++..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|+++ +..+ ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 876 3556677788889999998888754443333 33 88999999999987 3344 35667
Q ss_pred CCCCcEEEccCCcccc-----cCCcccCCCCCCCEEEccCCcCC----ccCchhhcCcCCCCEEECcCCcCccc----CC
Q 041300 380 LNSLTKLILRGNQLTG-----RLPTEIGSLIELEYLDFSANKFN----NSVPESLGNLLKLHYLGLSNNQFVLE----LP 446 (716)
Q Consensus 380 l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~ 446 (716)
+++|+.|++++|+++. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|+.|+|++|.++.. ++
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 8899999999998872 34447888899999999999986 56777888899999999999998865 45
Q ss_pred hhhhC--CCCCCEEECCCCcCcc----ccchhc-cCCCCCCEEECcCCcCcccC
Q 041300 447 KELEK--LVQLSELDASHNLFGG----EIPFQI-CSLKSLEKLNLSHNNLSGLI 493 (716)
Q Consensus 447 ~~~~~--l~~L~~L~ls~N~l~~----~~p~~~-~~l~~L~~L~ls~N~l~~~~ 493 (716)
..+.. +++|+.|++++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 66643 8899999999999987 477776 66899999999999998765
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.3e-23 Score=219.73 Aligned_cols=235 Identities=18% Similarity=0.181 Sum_probs=174.1
Q ss_pred CCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCc-cchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEE
Q 041300 261 GLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGN-ISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLN 339 (716)
Q Consensus 261 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 339 (716)
+.++.+++++|.+.+..+. +..+++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4566666666666655554 44678888888888887765 667778888888888888888877777777888888888
Q ss_pred cccC-cCccc-CcccccCCCCCCEEEccCC-ccccc-cCcccCCCC-CCcEEEccCC--ccc-ccCCcccCCCCCCCEEE
Q 041300 340 VSMN-NITGG-IPREIGNMSQLQALDLSLN-HIVGE-IPKELGKLN-SLTKLILRGN--QLT-GRLPTEIGSLIELEYLD 411 (716)
Q Consensus 340 L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~N--~l~-~~~~~~~~~l~~L~~L~ 411 (716)
+++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 8888 57653 5666778888999999988 88754 466677888 8999999988 444 34566677888999999
Q ss_pred ccCCc-CCccCchhhcCcCCCCEEECcCCc-CcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcC
Q 041300 412 FSANK-FNNSVPESLGNLLKLHYLGLSNNQ-FVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNL 489 (716)
Q Consensus 412 Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l 489 (716)
+++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| +....-..+. ..++.|++++|++
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l 305 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHF 305 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccC
Confidence 99998 776777788888999999999985 32222235778889999999988 4432222222 2366667899999
Q ss_pred cccCCcCCcC
Q 041300 490 SGLIPNCFEG 499 (716)
Q Consensus 490 ~~~~~~~~~~ 499 (716)
++..|..+..
T Consensus 306 ~~~~~~~~~~ 315 (336)
T 2ast_B 306 TTIARPTIGN 315 (336)
T ss_dssp CCTTCSSCSS
T ss_pred ccccCCcccc
Confidence 9888876653
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=209.03 Aligned_cols=154 Identities=25% Similarity=0.263 Sum_probs=78.4
Q ss_pred CCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccc--c--CcccCCCCCCcEEEccCCcccccCCc----ccC
Q 041300 331 KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGE--I--PKELGKLNSLTKLILRGNQLTGRLPT----EIG 402 (716)
Q Consensus 331 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~ 402 (716)
.+++|++|++++|++++..+..+..+++|++|++++|++.+. . +..+..+++|++|+|++|+++. ++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 344444444444444444444444455555555555544321 1 1122345555555555555541 111 124
Q ss_pred CCCCCCEEEccCCcCCccCchhhcCc---CCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCC
Q 041300 403 SLIELEYLDFSANKFNNSVPESLGNL---LKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSL 479 (716)
Q Consensus 403 ~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 479 (716)
.+++|++|+|++|.+.+..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|++++|++++. |. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 44555555555555555445444444 45666666666665 3444442 4666666666666643 22 4556666
Q ss_pred CEEECcCCcCc
Q 041300 480 EKLNLSHNNLS 490 (716)
Q Consensus 480 ~~L~ls~N~l~ 490 (716)
+.|++++|+|+
T Consensus 297 ~~L~L~~N~l~ 307 (310)
T 4glp_A 297 DNLTLDGNPFL 307 (310)
T ss_dssp SCEECSSTTTS
T ss_pred cEEECcCCCCC
Confidence 77777777665
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=7.3e-22 Score=203.06 Aligned_cols=192 Identities=24% Similarity=0.340 Sum_probs=109.6
Q ss_pred CCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEE
Q 041300 308 YPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLI 387 (716)
Q Consensus 308 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 387 (716)
+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|+
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 34445555555544432 1 34445555555555555553332 55555555555555555532 2455556666666
Q ss_pred ccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCcc
Q 041300 388 LRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGG 467 (716)
Q Consensus 388 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 467 (716)
+++|++++. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|++++.. . +..+++|+.|++++|.+++
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-P-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-h-hcCCCCCCEEECCCCccCc
Confidence 666666542 2 25566666666666666654333 556666666666666665422 2 5666666666666666664
Q ss_pred ccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccc
Q 041300 468 EIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG 515 (716)
Q Consensus 468 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~ 515 (716)
..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 433 5566677777777777765543 5666777777777777654
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.4e-21 Score=194.86 Aligned_cols=159 Identities=21% Similarity=0.200 Sum_probs=95.2
Q ss_pred CCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEcc
Q 041300 334 KLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFS 413 (716)
Q Consensus 334 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 413 (716)
+++.|+|++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|+|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 45555555555555544455555555555555555555445555555555666666665555444555566666666666
Q ss_pred CCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCccc
Q 041300 414 ANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL 492 (716)
Q Consensus 414 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 492 (716)
+|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6666655555556666666666666666655555566666666666666666665555666666777777777766643
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=8.7e-22 Score=202.52 Aligned_cols=196 Identities=23% Similarity=0.317 Sum_probs=150.7
Q ss_pred cccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCC
Q 041300 281 LRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQ 360 (716)
Q Consensus 281 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 360 (716)
+..+++|+.|++++|.++.. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|++++. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 34566777777777777653 2 46677788888888888776544 77788888888888887753 3577888888
Q ss_pred EEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCc
Q 041300 361 ALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQ 440 (716)
Q Consensus 361 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 440 (716)
+|++++|++++. + .+..+++|+.|++++|++++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|+
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 888888888753 3 37788888888888888875433 7788888888888888876443 7888888899999888
Q ss_pred CcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCccc
Q 041300 441 FVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL 492 (716)
Q Consensus 441 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 492 (716)
+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++.
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 875433 7788889999999999886654 78889999999999998753
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=5.4e-21 Score=200.58 Aligned_cols=240 Identities=19% Similarity=0.137 Sum_probs=153.1
Q ss_pred EEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccC-CCCCCCCCCCE-EEccc
Q 041300 265 AFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEIS-SNWGKCPKLGT-LNVSM 342 (716)
Q Consensus 265 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~L~~ 342 (716)
+++.++++++ .+|..+ .+++++|+|++|+|+...+.+|..+++|++|+|++|++.+.++ ..|.+++++.. +.++.
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4555555555 344433 2467777777777776666677777777777777777655433 45667776654 55566
Q ss_pred CcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccC-CcccccCCcccCCCC-CCCEEEccCCcCCcc
Q 041300 343 NNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG-NQLTGRLPTEIGSLI-ELEYLDFSANKFNNS 420 (716)
Q Consensus 343 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~ 420 (716)
|+++...|..|..+++|++|++++|++....+..+....++..|++.+ |++....+..|..+. .++.|+|++|.|+.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 777777777777777777777777777765555566666677777754 456655445555553 577778888887754
Q ss_pred CchhhcCcCCCCEEECcC-CcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcC
Q 041300 421 VPESLGNLLKLHYLGLSN-NQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEG 499 (716)
Q Consensus 421 ~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 499 (716)
.+..| ...+|+.|++++ |.++...+..|..+++|++||+++|+|+...+..+ .+|+.|.+.++.--..+| .+..
T Consensus 170 ~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~ 244 (350)
T 4ay9_X 170 HNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEK 244 (350)
T ss_dssp CTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTT
T ss_pred Chhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-Cchh
Confidence 44443 345677777764 55554444567777788888888888775444333 445555544433222344 3677
Q ss_pred CCCCCEEEccCCc
Q 041300 500 MHGLSIIDISDNQ 512 (716)
Q Consensus 500 ~~~L~~l~ls~N~ 512 (716)
+++|+.++++++.
T Consensus 245 l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 245 LVALMEASLTYPS 257 (350)
T ss_dssp CCSCCEEECSCHH
T ss_pred CcChhhCcCCCCc
Confidence 7788888886544
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.5e-21 Score=184.77 Aligned_cols=180 Identities=22% Similarity=0.248 Sum_probs=138.4
Q ss_pred cceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCcc
Q 041300 40 CAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAE 119 (716)
Q Consensus 40 c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 119 (716)
|.|.+|.|...+ +. .++ ..-.++|++|++++|.+.+..+..|..+++|++|+|++|.+++..+..
T Consensus 7 C~~~~v~c~~~~-----------l~-~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (208)
T 2o6s_A 7 CSGTTVECYSQG-----------RT-SVP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV 71 (208)
T ss_dssp EETTEEECCSSC-----------CS-SCC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred ECCCEEEecCCC-----------cc-CCC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh
Confidence 789999997432 22 221 223468999999999999888888999999999999999999777777
Q ss_pred ccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCc
Q 041300 120 VGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLF 199 (716)
Q Consensus 120 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 199 (716)
|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..+..
T Consensus 72 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----- 146 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR----- 146 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT-----
T ss_pred cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc-----
Confidence 899999999999999999777777899999999999999999888888999999999999999888654444444
Q ss_pred eeeCCCCCcccCCCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCcccc
Q 041300 200 ELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNIC 258 (716)
Q Consensus 200 ~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 258 (716)
+++|++|++++|.+.+..| .+++|+++.|.+++.+|..++
T Consensus 147 -------------l~~L~~L~l~~N~~~~~~~------~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 147 -------------LTSLQYIWLHDNPWDCTCP------GIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp -------------CTTCCEEECCSCCBCCCTT------TTHHHHHHHHHCTTTBBCTTS
T ss_pred -------------CCCccEEEecCCCeecCCC------CHHHHHHHHHhCCceeeccCc
Confidence 4466777777776654332 355555666666555554443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=5.3e-20 Score=193.00 Aligned_cols=220 Identities=15% Similarity=0.081 Sum_probs=106.5
Q ss_pred ccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCcc-chhhCCCCCCCE-EEccCCccccccCCCCCCCCCCCEEEc
Q 041300 263 LEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNI-SEALGLYPNLTF-IDLSRNNFYGEISSNWGKCPKLGTLNV 340 (716)
Q Consensus 263 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~L 340 (716)
++.|++++|+|+.+.+..|.++++|++|+|++|++.+.+ +.+|..++++.+ +.++.|+++...+..|..+++|++|++
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence 444444444444333344455555555555555543322 234445554443 334445555555555555555555555
Q ss_pred ccCcCcccCcccccCCCCCCEEEccC-CccccccCcccCCCC-CCcEEEccCCcccccCCcccCCCCCCCEEEccC-CcC
Q 041300 341 SMNNITGGIPREIGNMSQLQALDLSL-NHIVGEIPKELGKLN-SLTKLILRGNQLTGRLPTEIGSLIELEYLDFSA-NKF 417 (716)
Q Consensus 341 ~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l 417 (716)
++|+++...+..+....++..|++.+ +++....+..|..+. .++.|++++|+|+. ++.......+|+.|++++ |.+
T Consensus 112 ~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l 190 (350)
T 4ay9_X 112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNL 190 (350)
T ss_dssp EEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTC
T ss_pred cccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcc
Confidence 55555544444444444555555543 344433334444443 35556666666653 333333344555666543 444
Q ss_pred CccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCC
Q 041300 418 NNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHN 487 (716)
Q Consensus 418 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N 487 (716)
+...+..|.++++|++|++++|+|+...+.. +.+|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus 191 ~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 191 EELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred cCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4333345556666666666666665333222 2344444433332222344 2455666666666544
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.4e-20 Score=179.20 Aligned_cols=130 Identities=22% Similarity=0.274 Sum_probs=52.3
Q ss_pred CCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEcc
Q 041300 310 NLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILR 389 (716)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 389 (716)
+|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444444444444444443333333444444444444444443333333344444444444
Q ss_pred CCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCC
Q 041300 390 GNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNN 439 (716)
Q Consensus 390 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 439 (716)
+|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 44443333333333344444444444443333333333333333333333
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.4e-19 Score=174.53 Aligned_cols=155 Identities=21% Similarity=0.258 Sum_probs=112.5
Q ss_pred CEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCC
Q 041300 360 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNN 439 (716)
Q Consensus 360 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 439 (716)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|+.|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45566666665 3444332 46677777777776665556777777777777777777666777777777777777777
Q ss_pred cCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccC
Q 041300 440 QFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPV 517 (716)
Q Consensus 440 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~ 517 (716)
+++...+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 777555555677778888888888887777777888888888888888888877777888888888888888887643
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.5e-19 Score=199.40 Aligned_cols=186 Identities=22% Similarity=0.320 Sum_probs=100.2
Q ss_pred CccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcc
Q 041300 262 LLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVS 341 (716)
Q Consensus 262 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 341 (716)
.++.|++++|.+++ +|..+ +++|+.|++++|+++.. | ..+++|++|++++|.+++ +|. +.. +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666665 44433 25566666666666632 2 334566666666666665 333 333 56666666
Q ss_pred cCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccC
Q 041300 342 MNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSV 421 (716)
Q Consensus 342 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 421 (716)
+|++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|+|++|++++ +|. +. ++|+.|+|++|.|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 666654 333 45566666666666653 333 34556666666666654 444 43 55666666666665 33
Q ss_pred chhhcCcCCC-------CEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccC
Q 041300 422 PESLGNLLKL-------HYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICS 475 (716)
Q Consensus 422 ~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~ 475 (716)
|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|++++|.+++.+|..+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 33 332 44 55555555555 34444445555555555555555555554443
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=174.86 Aligned_cols=156 Identities=21% Similarity=0.236 Sum_probs=113.0
Q ss_pred CEEEccCCccccccCcccCCCCCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcC
Q 041300 360 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLP-TEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSN 438 (716)
Q Consensus 360 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 438 (716)
+.+++++|.++ .+|..+. +.++.|+|++|++++..+ ..|..+++|+.|+|++|.|++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35666666665 3444332 235666777777665533 3356677777777777777766666777777777777777
Q ss_pred CcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300 439 NQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP 518 (716)
Q Consensus 439 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p 518 (716)
|++++..+..|..+++|++|++++|++++..|..|..+++|+.|+|++|+|++..|..|..+++|+.|++++|++.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 77776666677777888888888888887777788888888888888888888878888888888888888888887654
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.9e-19 Score=198.48 Aligned_cols=186 Identities=22% Similarity=0.315 Sum_probs=82.2
Q ss_pred cccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEcc
Q 041300 238 MLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLS 317 (716)
Q Consensus 238 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls 317 (716)
+++.|++++|.+++ +|..+ .+.|+.|++++|+++ .+| ..+++|+.|++++|++++ +|. +.. +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 34455555555544 23222 134555555555544 233 223445555555555544 222 222 45555555
Q ss_pred CCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccC
Q 041300 318 RNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRL 397 (716)
Q Consensus 318 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 397 (716)
+|.+++ +|. .+++|+.|++++|++++ +|. .+++|++|++++|++++ +|. +. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 555544 222 34445555555555543 222 33445555555555543 333 32 44555555555554 33
Q ss_pred CcccCCCCCC-------CEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhC
Q 041300 398 PTEIGSLIEL-------EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEK 451 (716)
Q Consensus 398 ~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 451 (716)
|. +.. +| +.|+|++|.|+ .+|..+..+++|+.|+|++|++++..|..+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 33 322 34 45555555554 23444444555555555555554444444443
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.3e-19 Score=190.82 Aligned_cols=158 Identities=26% Similarity=0.233 Sum_probs=82.1
Q ss_pred CCEEEccCCccccccCcccC-CCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECc
Q 041300 359 LQALDLSLNHIVGEIPKELG-KLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLS 437 (716)
Q Consensus 359 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 437 (716)
++.|+|++|+|++..+..+. .+++|+.|+|++|+|++..+..|..+++|++|+|++|.|+...+..|.++++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44455555554444444444 44555555555555554444445555555555555555554444445555555555555
Q ss_pred CCcCcccCChhhhCCCCCCEEECCCCcCccccchhc---cCCCCCCEEECcCCcCcccCCcCCcCCCC--CCEEEccCCc
Q 041300 438 NNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQI---CSLKSLEKLNLSHNNLSGLIPNCFEGMHG--LSIIDISDNQ 512 (716)
Q Consensus 438 ~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~---~~l~~L~~L~ls~N~l~~~~~~~~~~~~~--L~~l~ls~N~ 512 (716)
+|+++...|..|..+++|+.|+|++|++++..+..+ ..+++|+.|+|++|+|+.+.+..|..++. ++.|++++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 555555445555555555555555555554333333 34566666666666666554455555554 3566666666
Q ss_pred cccc
Q 041300 513 LQGP 516 (716)
Q Consensus 513 l~~~ 516 (716)
+.+.
T Consensus 201 ~~C~ 204 (361)
T 2xot_A 201 LECD 204 (361)
T ss_dssp EECC
T ss_pred ccCC
Confidence 6543
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=7.1e-19 Score=172.35 Aligned_cols=160 Identities=23% Similarity=0.252 Sum_probs=133.0
Q ss_pred CCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCC
Q 041300 38 SPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP 117 (716)
Q Consensus 38 ~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 117 (716)
..|.|.+|.|... ++. .++. . -.++|++|+|++|.+.+..|..|.++++|++|+|++|.|+...+
T Consensus 17 ~~Cs~~~v~c~~~-----------~l~-~ip~-~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 81 (229)
T 3e6j_A 17 CSCSGTTVDCRSK-----------RHA-SVPA-G--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV 81 (229)
T ss_dssp CEEETTEEECTTS-----------CCS-SCCS-C--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CEEeCCEeEccCC-----------CcC-ccCC-C--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh
Confidence 6899999999642 222 3322 1 23789999999999999999999999999999999999987777
Q ss_pred ccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCC
Q 041300 118 AEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKF 197 (716)
Q Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 197 (716)
..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.++ .+|..+.++++|++|+|++|.+++..+..+.
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~---- 156 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFD---- 156 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTT----
T ss_pred hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHh----
Confidence 78899999999999999999888888999999999999999998 6788899999999999999999865444444
Q ss_pred CceeeCCCCCcccCCCCccCEEEeeCCcCcccCC
Q 041300 198 LFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIP 231 (716)
Q Consensus 198 L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 231 (716)
.+++|+.|++++|.+....+
T Consensus 157 --------------~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 157 --------------RLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp --------------TCTTCCEEECTTSCBCTTBG
T ss_pred --------------CCCCCCEEEeeCCCccCCcc
Confidence 44577888888888775443
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=8.9e-19 Score=178.36 Aligned_cols=171 Identities=23% Similarity=0.324 Sum_probs=91.4
Q ss_pred CCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEE
Q 041300 307 LYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKL 386 (716)
Q Consensus 307 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 386 (716)
.+++|+.|++++|.+... ..+..+++|+.|++++|++++..+ +..+++|++|++++|.+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--------------- 104 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--------------- 104 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---------------
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC---------------
Confidence 345566666666655533 124445555555555555554332 4445555555555555442
Q ss_pred EccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCc
Q 041300 387 ILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFG 466 (716)
Q Consensus 387 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 466 (716)
+ +.+..+++|++|++++|.+.+. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.++
T Consensus 105 ----------~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 105 ----------L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp ----------G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ----------C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 1 1244555555555555555432 2345555555555555555532 34555566666666666665
Q ss_pred cccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccc
Q 041300 467 GEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQG 515 (716)
Q Consensus 467 ~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~ 515 (716)
+..| +..+++|+.|++++|+++.. + .+..+++|+.|++++|++..
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 4443 55666666666666666653 2 25666666666666666654
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.2e-18 Score=170.66 Aligned_cols=156 Identities=24% Similarity=0.301 Sum_probs=112.8
Q ss_pred CCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcC
Q 041300 359 LQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSN 438 (716)
Q Consensus 359 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 438 (716)
.+.++.+++.+. .+|..+. ++|+.|+|++|++++..|..+..+++|++|+|++|.+....+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 455666666665 4444332 5677777777777766666677777777777777777655556667777777777777
Q ss_pred CcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300 439 NQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP 518 (716)
Q Consensus 439 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p 518 (716)
|++++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|+|++..+..|..+++|+.|++++|++.+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 7777666666777777888888888777 567777778888888888888887777778888888888888888877654
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.2e-18 Score=169.42 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=91.3
Q ss_pred EEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCc
Q 041300 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANK 416 (716)
Q Consensus 337 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 416 (716)
.++++++.++. +|..+. ++|+.|++++|+|++..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 44444444442 233222 455566666666655445555566666666666666665555666666666666666666
Q ss_pred CCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300 417 FNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS 490 (716)
Q Consensus 417 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 490 (716)
|+...+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|.+++..+..+..+++|+.|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66554455566666666666666666655666666666666666666666666666666677777777777665
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=7.1e-19 Score=179.09 Aligned_cols=184 Identities=23% Similarity=0.293 Sum_probs=130.4
Q ss_pred EecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCc
Q 041300 267 IVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNIT 346 (716)
Q Consensus 267 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 346 (716)
.+..+.+.+.. .+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred HhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence 34555554432 345788999999999999876 347889999999999999998655 889999999999999998
Q ss_pred ccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhc
Q 041300 347 GGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLG 426 (716)
Q Consensus 347 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 426 (716)
+. ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++..+ +.
T Consensus 104 ~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 104 DL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp CG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence 63 3488899999999999998753 4566777777777777777643 456666666666666666665433 55
Q ss_pred CcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCc
Q 041300 427 NLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFG 466 (716)
Q Consensus 427 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 466 (716)
.+++|+.|++++|.++. ++ .+..+++|+.|++++|.+.
T Consensus 176 ~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 56666666666665553 22 2444444555555444443
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=168.98 Aligned_cols=152 Identities=21% Similarity=0.188 Sum_probs=98.9
Q ss_pred EEEcccCcCcccCcccccCCCCCCEEEccCCccccccC-cccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 041300 337 TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIP-KELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSAN 415 (716)
Q Consensus 337 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 415 (716)
.+++++|.++. +|..+. ..+++|++++|++++..+ ..|..+++|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555555543 333322 334566666666665433 33566666666666666666655556666777777777777
Q ss_pred cCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcc
Q 041300 416 KFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG 491 (716)
Q Consensus 416 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 491 (716)
.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|.+.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 7766666666677777777777777776666667777777777777777776667777777777777777777764
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.3e-18 Score=183.23 Aligned_cols=175 Identities=23% Similarity=0.187 Sum_probs=90.1
Q ss_pred EEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCC-CCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCC
Q 041300 289 RVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWG-KCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLN 367 (716)
Q Consensus 289 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 367 (716)
.+++++++++..+. .+ .+.++.|+|++|.+++..+..|. .+++|+.|+|++|+|++..+..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSSCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 44555555543222 11 23355555555555555554454 5555555555555555555555555555555555555
Q ss_pred ccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhh---cCcCCCCEEECcCCcCccc
Q 041300 368 HIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESL---GNLLKLHYLGLSNNQFVLE 444 (716)
Q Consensus 368 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~ 444 (716)
++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|.|++..+..| ..+++|+.|+|++|+++..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 5554444455555555555555555555555555555555555555555554333333 3455555555555555543
Q ss_pred CChhhhCCCC--CCEEECCCCcCc
Q 041300 445 LPKELEKLVQ--LSELDASHNLFG 466 (716)
Q Consensus 445 ~~~~~~~l~~--L~~L~ls~N~l~ 466 (716)
.+..+..++. ++.|++++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 3344444443 244555555443
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=3.1e-20 Score=212.64 Aligned_cols=218 Identities=22% Similarity=0.204 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCCcceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEE
Q 041300 3 EEADALLKWKASLQSHNQSLLPSWTNASTNVSSKISPCAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLD 82 (716)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~ 82 (716)
.++++|+++....... +|.....+.......++|.+++++ .++++.|+|.++++... +. ..|+.++
T Consensus 132 ~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~l~L~~n~~~~~-~~------~~l~~l~ 197 (727)
T 4b8c_D 132 CTKQALMEMADTLTDS------KTAKKQQPTGDSTPSGTATNSAVS-TPLTPKIELFANGKDEA-NQ------ALLQHKK 197 (727)
T ss_dssp CCCHHHHHHHHHHHHH------HTTC------------------------------------------------------
T ss_pred cchhhhhhhhhhcccc------cCcccCCCcCCCCccccCCCceec-CCccceEEeeCCCCCcc-hh------hHhhcCc
Confidence 4567888887766322 232222122222345789998886 47899999999888642 11 2234444
Q ss_pred CCCCCccc---------cCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCcee
Q 041300 83 LSLNGFFG---------TIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEEL 153 (716)
Q Consensus 83 Ls~n~i~~---------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (716)
|+.|.|.+ ..+..|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|++|
T Consensus 198 Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 275 (727)
T 4b8c_D 198 LSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVL 275 (727)
T ss_dssp ------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEE
T ss_pred cCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEE
Confidence 44444432 45778999999999999999998 67777778999999999999998 788889999999999
Q ss_pred ecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccCCCCccCEEEeeCCcCcccCCCc
Q 041300 154 FLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVGNLTNLKSLGLMDNHLSGSIPPS 233 (716)
Q Consensus 154 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 233 (716)
+|++|.|+ .+|..|+++++|+.|+|++|.|+ .+|. .+.++++|+.|+|++|.+++.+|..
T Consensus 276 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~------------------~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 276 DLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW------------------EFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp ECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS------------------STTSCTTCCCEECTTSCCCSHHHHH
T ss_pred eCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh------------------hhhcCCCccEEeCCCCccCCCChHH
Confidence 99999998 66888999999999999999886 3333 3445568888999999999888877
Q ss_pred cccc--cccEEEccCCcCccccCcc
Q 041300 234 FGNS--MLTWLTLSGNHFTGYLPHN 256 (716)
Q Consensus 234 ~~~~--~L~~L~L~~n~l~~~~~~~ 256 (716)
+... ....++|++|.+++.+|..
T Consensus 336 ~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 336 LTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred HhhcchhhhHHhhccCcccCcCccc
Confidence 7553 3345678888887766653
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.4e-18 Score=193.74 Aligned_cols=171 Identities=25% Similarity=0.292 Sum_probs=87.6
Q ss_pred ccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCE
Q 041300 282 RNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQA 361 (716)
Q Consensus 282 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 361 (716)
..+++|+.|++++|.+.... .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+++. ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 34555555666665555432 34555555555555555554433 45555555555555555532 24455555555
Q ss_pred EEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcC
Q 041300 362 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQF 441 (716)
Q Consensus 362 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 441 (716)
|+|++|.+.+. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55555555431 2344555555555555555533 344555555555555555554333 44555555555555555
Q ss_pred cccCChhhhCCCCCCEEECCCCcCc
Q 041300 442 VLELPKELEKLVQLSELDASHNLFG 466 (716)
Q Consensus 442 ~~~~~~~~~~l~~L~~L~ls~N~l~ 466 (716)
++. ..+..+++|+.|+|++|.+.
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCC--hHHccCCCCCEEEccCCcCc
Confidence 432 23445555555555555544
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.6e-18 Score=193.32 Aligned_cols=191 Identities=23% Similarity=0.287 Sum_probs=162.7
Q ss_pred cccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEcc
Q 041300 238 MLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLS 317 (716)
Q Consensus 238 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls 317 (716)
.+..+.+..+.+.+..+ +..+..|+.|++++|.+... + .+..+++|+.|+|++|.+++..+ +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 45566777777776544 45677899999999999854 3 58899999999999999998765 8889999999999
Q ss_pred CCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccC
Q 041300 318 RNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRL 397 (716)
Q Consensus 318 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 397 (716)
+|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++..
T Consensus 96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 9999864 3688999999999999999864 4688999999999999999865 67889999999999999999765
Q ss_pred CcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCccc
Q 041300 398 PTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLE 444 (716)
Q Consensus 398 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 444 (716)
| +..+++|+.|+|++|.|.+. ..+..+++|+.|+|++|++...
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 5 88999999999999999864 4688999999999999999854
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=5e-18 Score=162.27 Aligned_cols=150 Identities=17% Similarity=0.225 Sum_probs=69.8
Q ss_pred CCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEEC
Q 041300 357 SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGL 436 (716)
Q Consensus 357 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 436 (716)
++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 33444444444443 222 2334444444444444332 1123444444444444444444434444444455555555
Q ss_pred cCCcCcccCChhhhCCCCCCEEECCCCc-CccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccc
Q 041300 437 SNNQFVLELPKELEKLVQLSELDASHNL-FGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQ 514 (716)
Q Consensus 437 s~N~l~~~~~~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~ 514 (716)
++|++++..|..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|++++.. .+..+++|+.|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 5555544444445555555555555554 33 233 3455555566666666555432 4555566666666666654
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.3e-17 Score=159.33 Aligned_cols=151 Identities=19% Similarity=0.272 Sum_probs=80.0
Q ss_pred CCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEE
Q 041300 332 CPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLD 411 (716)
Q Consensus 332 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 411 (716)
+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344444444444444 222 3444555555555555443 223455555555555555555554555555555666666
Q ss_pred ccCCcCCccCchhhcCcCCCCEEECcCCc-CcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300 412 FSANKFNNSVPESLGNLLKLHYLGLSNNQ-FVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS 490 (716)
Q Consensus 412 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 490 (716)
+++|.+++..|..+..+++|++|++++|+ +. .+| .+..+++|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 66666555555555556666666666665 33 333 455566666666666666542 2 4556666666666666654
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=3.7e-18 Score=170.96 Aligned_cols=167 Identities=21% Similarity=0.250 Sum_probs=94.3
Q ss_pred CCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccC
Q 041300 335 LGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSA 414 (716)
Q Consensus 335 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 414 (716)
+..++++.|.+++.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|++++..+ +..+++|+.|+|++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 334444444444222 34445555555555555542 23 34555555555555555553322 55555566666666
Q ss_pred CcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCC
Q 041300 415 NKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIP 494 (716)
Q Consensus 415 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~ 494 (716)
|.+++. |. +.. ++|+.|++++|++++. ..+..+++|+.|++++|++++. + .+..+++|+.|++++|++++.
T Consensus 95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 655542 21 112 5666666666666542 2466666666667766666643 2 456667777777777777665
Q ss_pred cCCcCCCCCCEEEccCCccccc
Q 041300 495 NCFEGMHGLSIIDISDNQLQGP 516 (716)
Q Consensus 495 ~~~~~~~~L~~l~ls~N~l~~~ 516 (716)
..+..+++|+.|++++|++.+.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECC
T ss_pred HHhccCCCCCEEeCCCCcccCC
Confidence 5566777777777777777654
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=9.8e-18 Score=159.34 Aligned_cols=132 Identities=23% Similarity=0.324 Sum_probs=81.4
Q ss_pred cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCch-hhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCC
Q 041300 384 TKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPE-SLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASH 462 (716)
Q Consensus 384 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~ 462 (716)
+.+++++|+++ .+|..+.. +|++|++++|.+.+..+. .|..+++|++|+|++|++++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 44555555554 33433322 555666666666544443 355666666666666666665566666666666666666
Q ss_pred CcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300 463 NLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP 518 (716)
Q Consensus 463 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p 518 (716)
|++++..+..|..+++|+.|++++|+|++..|..|..+++|+.|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 66666666666666777777777777776666677777777777777777766544
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=9.9e-18 Score=174.11 Aligned_cols=222 Identities=12% Similarity=0.001 Sum_probs=154.8
Q ss_pred cCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCc----CcccCcccccCCCC
Q 041300 283 NCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN----ITGGIPREIGNMSQ 358 (716)
Q Consensus 283 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~ 358 (716)
+|++|+.|++.+ .++.+...+|..+++|+.+++++|.+....+..|..+.++..+.+..+. ........|.++..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 377777777777 7777777777777888888888887777777777777766666655422 22233445556666
Q ss_pred CC-EEEccCCcc-ccccCcccCCCCCCcEEEccCCcccccCCccc-CCCCCCCEEEccCCcCCccCchhhcCcCCCCEEE
Q 041300 359 LQ-ALDLSLNHI-VGEIPKELGKLNSLTKLILRGNQLTGRLPTEI-GSLIELEYLDFSANKFNNSVPESLGNLLKLHYLG 435 (716)
Q Consensus 359 L~-~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 435 (716)
|+ .+.+....- .......-....+++.+.+.++-.. .....+ ..+++|+.|+|++|.++.+.+.+|.++++|+.|+
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 66 444433221 1111111123455666766654222 111111 2367899999999888877778899999999999
Q ss_pred CcCCcCcccCChhhhCCCCCC-EEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEc
Q 041300 436 LSNNQFVLELPKELEKLVQLS-ELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDI 508 (716)
Q Consensus 436 Ls~N~l~~~~~~~~~~l~~L~-~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~l 508 (716)
+.+| +....+.+|.++.+|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9888 7777778899999998 999988 777677888999999999999999999888889999999988864
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2.2e-18 Score=197.22 Aligned_cols=182 Identities=24% Similarity=0.262 Sum_probs=92.0
Q ss_pred ccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCC
Q 041300 324 EISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGS 403 (716)
Q Consensus 324 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 403 (716)
..+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|+.|+|++|+|+ .+|..++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34555666666777777777766 44555556677777777777776 56666667777777777777776 55666777
Q ss_pred CCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCC-CCEEECCCCcCccccchhccCCCCCCEE
Q 041300 404 LIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQ-LSELDASHNLFGGEIPFQICSLKSLEKL 482 (716)
Q Consensus 404 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~ls~N~l~~~~p~~~~~l~~L~~L 482 (716)
+++|++|+|++|.|+ .+|..|..+++|+.|+|++|.+++.+|..+..+.. +..+++++|.+++.+|. .|+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cccee
Confidence 777777777777765 45656777777777777777776666665543321 12356677777666654 34455
Q ss_pred ECcCC--------cCcccCCcCCcCCCCCCEEEccCCcccc
Q 041300 483 NLSHN--------NLSGLIPNCFEGMHGLSIIDISDNQLQG 515 (716)
Q Consensus 483 ~ls~N--------~l~~~~~~~~~~~~~L~~l~ls~N~l~~ 515 (716)
++++| .+.+..+..+..+..+....++.|-+.+
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp -------------------------------------CCCG
T ss_pred EeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 55555 3444444445555566666777777654
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=5e-20 Score=204.34 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=87.0
Q ss_pred ccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEccc
Q 041300 263 LEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSM 342 (716)
Q Consensus 263 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 342 (716)
|+.|++++|.+++ +|. +.++++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++ +| .++.+++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 5556666666654 344 677777777777777777 456677777888888888888876 34 677788888888888
Q ss_pred CcCcccC-cccccCCCCCCEEEccCCccccccCcc---cCCCCCCcEEEc
Q 041300 343 NNITGGI-PREIGNMSQLQALDLSLNHIVGEIPKE---LGKLNSLTKLIL 388 (716)
Q Consensus 343 n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L 388 (716)
|++++.. |..+..+++|+.|+|++|.+++..|.. +..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8888766 778888888888888888887654422 334777887764
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.2e-17 Score=165.28 Aligned_cols=170 Identities=20% Similarity=0.224 Sum_probs=90.7
Q ss_pred CCCCcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEE
Q 041300 284 CTSLIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALD 363 (716)
Q Consensus 284 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 363 (716)
+.++..+++++|.++... .+..+++|++|++++|.++.. + .+..+++|+.|++++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344555566666665433 344555666666666655532 2 34445555555555555553332 44455555555
Q ss_pred ccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcc
Q 041300 364 LSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVL 443 (716)
Q Consensus 364 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 443 (716)
+++|++++ +|. +.. ++|+.|+|++|.+++. ..+..+++|+.|++++|++++
T Consensus 92 L~~N~l~~-------------------------l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 92 VNRNRLKN-------------------------LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CCSSCCSC-------------------------CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-------------------------cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence 55555443 221 111 4555555555555532 235555556666666666553
Q ss_pred cCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCccc
Q 041300 444 ELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGL 492 (716)
Q Consensus 444 ~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 492 (716)
. + .+..+++|+.|++++|.+++. ..+..+++|+.|++++|+++..
T Consensus 143 ~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 143 I-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred C-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 2 2 455566666666666666644 4456667777777777776654
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.7e-17 Score=172.25 Aligned_cols=282 Identities=10% Similarity=0.035 Sum_probs=161.6
Q ss_pred CCCCcEEECCCCCccccCcccccC-CCCCCEEECcCCcCc--ccCCccccCCCCCCEEEcccccCccCCCccccC-----
Q 041300 75 FPQLVHLDLSLNGFFGTIPSQIGN-LTKLSYISLDSNQLS--GKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQ----- 146 (716)
Q Consensus 75 l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----- 146 (716)
+.+++.|+++++ +....-..+.. +++|++|||++|++. ...+..+ +.++.+.+..|. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhccccccc
Confidence 445666666653 11111122333 566777777777665 2222222 223444444442 23344555
Q ss_pred ---CCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCC----------CCcccCCC
Q 041300 147 ---LSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF----------LPLSVGNL 213 (716)
Q Consensus 147 ---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~----------~~~~~~~l 213 (716)
+++|++|+|.+ .++.+.+.+|.++++|+.|++.+|.++...+..|..+..+..+.... ....|.++
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 67777777766 66666666677777777777777766655555555555444444332 11122333
Q ss_pred CccC-EEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEc
Q 041300 214 TNLK-SLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRL 292 (716)
Q Consensus 214 ~~L~-~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 292 (716)
..|+ .+.+.... .++..+. ........+..+.+.++-...........+++|+.+++
T Consensus 176 ~~L~~~i~~~~~~---~l~~~~~-------------------~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L 233 (329)
T 3sb4_A 176 EPLETTIQVGAMG---KLEDEIM-------------------KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDI 233 (329)
T ss_dssp CCCEEEEEECTTC---CHHHHHH-------------------HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEEC
T ss_pred cccceeEEecCCC---cHHHHHh-------------------hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEEC
Confidence 3333 22222110 0111000 00001222333333332111111111123678888888
Q ss_pred cCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCC-EEEcccCcCcccCcccccCCCCCCEEEccCCcccc
Q 041300 293 NGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLG-TLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVG 371 (716)
Q Consensus 293 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 371 (716)
.+|+++.+...+|..+++|+.+++++| +..+.+..|.+|++|+ .+++.+ .++...+.+|.++++|+.+++++|.++.
T Consensus 234 ~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 234 SKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp TTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 888888877888888888888888887 7777777888888888 888887 6776777888888888888888888887
Q ss_pred ccCcccCCCCCCcEEEc
Q 041300 372 EIPKELGKLNSLTKLIL 388 (716)
Q Consensus 372 ~~~~~~~~l~~L~~L~L 388 (716)
..+..|.++++|+.++.
T Consensus 312 I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTCTTCCCCEEEC
T ss_pred cchhhhcCCcchhhhcc
Confidence 77778888888888764
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=7.4e-19 Score=194.95 Aligned_cols=190 Identities=21% Similarity=0.201 Sum_probs=123.0
Q ss_pred CCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCc-------------CcccCcccccCCCCCCEEE-ccCCccccc
Q 041300 307 LYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNN-------------ITGGIPREIGNMSQLQALD-LSLNHIVGE 372 (716)
Q Consensus 307 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~ 372 (716)
..++|+.|+|++|.++ .+|..++.+++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 4556666666666665 445556666666666665543 3334444445555555554 3433321
Q ss_pred cCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCC
Q 041300 373 IPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKL 452 (716)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 452 (716)
.|..+.+++|.++...+ ..|+.|+|++|.+++ +|. +..+++|+.|+|++|+++ .+|..++.+
T Consensus 424 ---------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred ---------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 22233334444443221 147778888888775 454 777788888888888877 667777788
Q ss_pred CCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccC-CcCCcCCCCCCEEEccCCcccccCCC
Q 041300 453 VQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLI-PNCFEGMHGLSIIDISDNQLQGPVPN 519 (716)
Q Consensus 453 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~-~~~~~~~~~L~~l~ls~N~l~~~~p~ 519 (716)
++|+.|+|++|.+++ +| .+..+++|+.|+|++|+|++.. |..|..+++|+.|++++|++++.+|.
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 888888888888875 55 6777888888888888887776 77777888888888888888776553
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=6.5e-17 Score=153.66 Aligned_cols=129 Identities=25% Similarity=0.296 Sum_probs=66.4
Q ss_pred CEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCc-ccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcC
Q 041300 360 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPT-EIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSN 438 (716)
Q Consensus 360 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 438 (716)
+++++++|+++ .+|..+.. +|+.|++++|++++..+. .+..+++|++|+|++|.|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34444444443 33333221 445555555555433332 244555555555555555555455555555555555555
Q ss_pred CcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcc
Q 041300 439 NQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSG 491 (716)
Q Consensus 439 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 491 (716)
|++++..+..|.++++|++|++++|++++..|..+..+++|+.|++++|.+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 55555555555555555555555555555555555555556666666665554
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=150.89 Aligned_cols=131 Identities=28% Similarity=0.310 Sum_probs=100.8
Q ss_pred cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCC
Q 041300 384 TKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHN 463 (716)
Q Consensus 384 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N 463 (716)
+.+++++|.++ .+|..+. ++|+.|+|++|.++ .+|..|.++++|+.|+|++|++++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666665 4444432 46777777777776 45677777788888888888887777777888888888888888
Q ss_pred cCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300 464 LFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVP 518 (716)
Q Consensus 464 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p 518 (716)
++++..|..|..+++|+.|+|++|+|+...+..|..+++|+.|++++|++.+...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 8887777788888888888888888888777788888899999999999876543
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=5.2e-16 Score=145.42 Aligned_cols=134 Identities=23% Similarity=0.320 Sum_probs=115.2
Q ss_pred cceeeeeeCCCCCEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCcc
Q 041300 40 CAWYGISCNDAGRVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAE 119 (716)
Q Consensus 40 c~w~gv~c~~~~~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 119 (716)
|.|.+|.|.. +++. .++ ....++|++|++++|++.+..+..|..+++|++|+|++|.+++..+..
T Consensus 7 C~~~~l~~~~-----------~~l~-~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (177)
T 2o6r_A 7 CSGTEIRCNS-----------KGLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV 71 (177)
T ss_dssp EETTEEECCS-----------SCCS-SCC---TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred eCCCEEEecC-----------CCCc-cCC---CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH
Confidence 6788887753 3333 232 223478999999999999888888999999999999999999877778
Q ss_pred ccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccc
Q 041300 120 VGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSI 188 (716)
Q Consensus 120 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 188 (716)
|+.+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 899999999999999999888888999999999999999999888888899999999999999988644
No 127
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=99.66 E-value=6.9e-17 Score=163.63 Aligned_cols=88 Identities=32% Similarity=0.616 Sum_probs=74.9
Q ss_pred cCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ 697 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~ 697 (716)
.+|...+.||+|+||+||+|++. ++..||||+++.. .. ...++|.+|+++|++++|||||+++|+|.+++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~-~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~ 88 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA---SD-NARKDFHREAELLTNLQHEHIVKFYGVCVEGD 88 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC---CH-HHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC---Ch-HHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC
Confidence 46778899999999999999763 4678999999753 22 24578999999999999999999999999999
Q ss_pred eeeEEEcccCCCCHHhHh
Q 041300 698 HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 ~~~lv~Ey~~~GsL~~~l 715 (716)
..|||||||++|+|.++|
T Consensus 89 ~~~lV~Ey~~~G~L~~~l 106 (299)
T 4asz_A 89 PLIMVFEYMKHGDLNKFL 106 (299)
T ss_dssp SEEEEEECCTTCBHHHHH
T ss_pred EEEEEEEcCCCCcHHHHH
Confidence 999999999999999987
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=5.6e-15 Score=156.62 Aligned_cols=218 Identities=13% Similarity=0.117 Sum_probs=110.4
Q ss_pred CcEEEccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccC
Q 041300 287 LIRVRLNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSL 366 (716)
Q Consensus 287 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 366 (716)
|+.+.+.. .++.+...+|..+++|+.++++.|.++......|. +.+|+.+.+.. .++.....+|.++++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCC
Confidence 44444432 33333334444444444444444444443333333 34444444442 23333344444444455554443
Q ss_pred CccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC-----ccCchhhcCcCCCCEEECcCCcC
Q 041300 367 NHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFN-----NSVPESLGNLLKLHYLGLSNNQF 441 (716)
Q Consensus 367 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l 441 (716)
| ++.....+|.+ .+|+.+.+. +.++.+....|.++++|+.+++.+|.+. ...+.+|.++++|+.+.+. +.+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i 311 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI 311 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred C-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence 2 33233334444 445555552 2333344445555555555555555443 2444566666666666666 335
Q ss_pred cccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCC-CCCEEEccCCcc
Q 041300 442 VLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMH-GLSIIDISDNQL 513 (716)
Q Consensus 442 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~-~L~~l~ls~N~l 513 (716)
+.....+|.++.+|+.+++..| ++...+.+|.++ +|+.+++++|.+....+..|.+++ +++.|.+..+.+
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 5455556666666666666443 444555666666 677777777766666666666663 456666655443
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=4.5e-16 Score=144.52 Aligned_cols=132 Identities=21% Similarity=0.120 Sum_probs=74.9
Q ss_pred CCCCEEEccCCccc-cccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEE
Q 041300 357 SQLQALDLSLNHIV-GEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLG 435 (716)
Q Consensus 357 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 435 (716)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45556666666655 44555555566666666666666543 4555666666666666666655555555566666666
Q ss_pred CcCCcCcccC-ChhhhCCCCCCEEECCCCcCccccc---hhccCCCCCCEEECcCCcCc
Q 041300 436 LSNNQFVLEL-PKELEKLVQLSELDASHNLFGGEIP---FQICSLKSLEKLNLSHNNLS 490 (716)
Q Consensus 436 Ls~N~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~L~ls~N~l~ 490 (716)
+++|++++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666665321 1445555556666666665554433 34555555666666555554
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=5e-15 Score=156.97 Aligned_cols=251 Identities=11% Similarity=0.106 Sum_probs=197.1
Q ss_pred cCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCccchhhCCC
Q 041300 229 SIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGNISEALGLY 308 (716)
Q Consensus 229 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 308 (716)
.....|....|+.+.+..+ ++.+....|.+ ..|+.+.+.. .+..+.+..|.+|++|+.+++.+|+++.....+|. .
T Consensus 127 I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~ 202 (401)
T 4fdw_A 127 IPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y 202 (401)
T ss_dssp ECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred ehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence 3344454456666666555 55555555655 3577777775 56666777888899999999999888888888887 4
Q ss_pred CCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCCCCCcEEEc
Q 041300 309 PNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLIL 388 (716)
Q Consensus 309 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 388 (716)
.+|+.+.+..+ +..+....|.++++|+.+++..| ++.....+|.+ .+|+.+.+ .+.++.....+|.++++|+.+++
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEE
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEe
Confidence 88999999854 77777888999999999999864 66566677777 78999999 45566677788999999999999
Q ss_pred cCCccc-----ccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCC
Q 041300 389 RGNQLT-----GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHN 463 (716)
Q Consensus 389 ~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N 463 (716)
.+|.+. ...+..|.++++|+.++|. +.+..+...+|.++++|+.+.+..| ++.....+|.++ +|+.+++++|
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 888765 4566788999999999998 4577777889999999999999665 666777889999 9999999999
Q ss_pred cCccccchhccCCC-CCCEEECcCCcCc
Q 041300 464 LFGGEIPFQICSLK-SLEKLNLSHNNLS 490 (716)
Q Consensus 464 ~l~~~~p~~~~~l~-~L~~L~ls~N~l~ 490 (716)
.+....+..|.+++ .++.|++..+.+.
T Consensus 356 ~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 356 TPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCcccccccccCCCCCccEEEeCHHHHH
Confidence 98877777888875 7889999888654
No 131
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=99.66 E-value=8.9e-17 Score=165.20 Aligned_cols=88 Identities=30% Similarity=0.647 Sum_probs=76.7
Q ss_pred cCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ 697 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~ 697 (716)
.+|...++||+|+||+||+|++. +++.||||+++.. .. ...++|.+|+++|++++|||||+++|+|.+++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~-~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~ 116 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA---SE-SARQDFQREAELLTMLQHQHIVRFFGVCTEGR 116 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC---SH-HHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC---CH-HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC
Confidence 45777889999999999999864 4678999999753 22 24578999999999999999999999999999
Q ss_pred eeeEEEcccCCCCHHhHh
Q 041300 698 HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 ~~~lv~Ey~~~GsL~~~l 715 (716)
..|||||||++|+|.++|
T Consensus 117 ~~~lV~Ey~~~G~L~~~l 134 (329)
T 4aoj_A 117 PLLMVFEYMRHGDLNRFL 134 (329)
T ss_dssp SEEEEEECCTTCBHHHHH
T ss_pred EEEEEEEcCCCCcHHHHH
Confidence 999999999999999986
No 132
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=99.65 E-value=1.1e-16 Score=162.87 Aligned_cols=88 Identities=22% Similarity=0.368 Sum_probs=74.9
Q ss_pred CCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300 625 DFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH 698 (716)
Q Consensus 625 ~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~ 698 (716)
++...+.||+|+||+||+|.+. +++.||||+++.... . ...++|.+|+.++++++|||||+++|+|.+++.
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~--~-~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~ 103 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAE--G-PLREEFRHEAMLRARLQHPNVVCLLGVVTKDQP 103 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CC--C--CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccC--h-HHHHHHHHHHHHHHhCCCCCCCCcceEEEECCE
Confidence 4566778999999999999863 467899999975321 1 245789999999999999999999999999999
Q ss_pred eeEEEcccCCCCHHhHh
Q 041300 699 SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 ~~lv~Ey~~~GsL~~~l 715 (716)
.+||||||++|+|.++|
T Consensus 104 ~~lV~Ey~~~G~L~~~L 120 (308)
T 4gt4_A 104 LSMIFSYCSHGDLHEFL 120 (308)
T ss_dssp CEEEEECCSSCBHHHHH
T ss_pred EEEEEEcCCCCcHHHHH
Confidence 99999999999999987
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=5e-16 Score=144.21 Aligned_cols=136 Identities=24% Similarity=0.272 Sum_probs=122.4
Q ss_pred CCCCCcEEEccCCccc-ccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCE
Q 041300 379 KLNSLTKLILRGNQLT-GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSE 457 (716)
Q Consensus 379 ~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 457 (716)
..++|+.|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3478999999999998 67888889999999999999999876 77899999999999999999878888888999999
Q ss_pred EECCCCcCcccc-chhccCCCCCCEEECcCCcCcccCC---cCCcCCCCCCEEEccCCccccc
Q 041300 458 LDASHNLFGGEI-PFQICSLKSLEKLNLSHNNLSGLIP---NCFEGMHGLSIIDISDNQLQGP 516 (716)
Q Consensus 458 L~ls~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~~---~~~~~~~~L~~l~ls~N~l~~~ 516 (716)
|++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 999999999753 3788999999999999999998766 5789999999999999998754
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=5.3e-16 Score=140.89 Aligned_cols=126 Identities=25% Similarity=0.274 Sum_probs=57.8
Q ss_pred CCcEEEccCCccc-ccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEEC
Q 041300 382 SLTKLILRGNQLT-GRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDA 460 (716)
Q Consensus 382 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 460 (716)
+|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444443 33333344444444444444444432 33444444444444444444334444444444555555
Q ss_pred CCCcCccc-cchhccCCCCCCEEECcCCcCcccCC---cCCcCCCCCCEEEcc
Q 041300 461 SHNLFGGE-IPFQICSLKSLEKLNLSHNNLSGLIP---NCFEGMHGLSIIDIS 509 (716)
Q Consensus 461 s~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~~---~~~~~~~~L~~l~ls 509 (716)
++|.+++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.||++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55554432 22444555555555555555554433 344555555555554
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2.2e-15 Score=141.11 Aligned_cols=134 Identities=24% Similarity=0.243 Sum_probs=97.1
Q ss_pred CcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCC
Q 041300 383 LTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASH 462 (716)
Q Consensus 383 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~ 462 (716)
.+.+++++|+++ .+|..+ .++|+.|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345666666665 333332 24677777777777765556667777777777777777765556677777888888888
Q ss_pred CcCccccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCcccccCCC
Q 041300 463 NLFGGEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGPVPN 519 (716)
Q Consensus 463 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p~ 519 (716)
|.+++..+..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..|.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 888876666677888888888888888877777778888888888888888876653
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=7.1e-16 Score=140.02 Aligned_cols=127 Identities=21% Similarity=0.135 Sum_probs=81.3
Q ss_pred CCCCEEEccCCccc-cccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEE
Q 041300 357 SQLQALDLSLNHIV-GEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLG 435 (716)
Q Consensus 357 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 435 (716)
++|+.|++++|.++ +.+|..+..+++|+.|++++|++++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666665 45555556666666666666666544 4566666677777777776655666666667777777
Q ss_pred CcCCcCccc-CChhhhCCCCCCEEECCCCcCccccc---hhccCCCCCCEEECc
Q 041300 436 LSNNQFVLE-LPKELEKLVQLSELDASHNLFGGEIP---FQICSLKSLEKLNLS 485 (716)
Q Consensus 436 Ls~N~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~L~ls 485 (716)
+++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777776642 23566667777777777777765554 456667777777765
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=3.6e-15 Score=141.54 Aligned_cols=127 Identities=26% Similarity=0.316 Sum_probs=79.9
Q ss_pred CEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEEECcCC
Q 041300 360 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNN 439 (716)
Q Consensus 360 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 439 (716)
+++++++|.++ .+|..+. ++|+.|++++|+++ .+|..+..+++|+.|+|++|.|++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555554 3443332 35666666666665 44555666666666666666666655566666666666666666
Q ss_pred cCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCCcCc
Q 041300 440 QFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHNNLS 490 (716)
Q Consensus 440 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 490 (716)
++++..+..|.++++|+.|+|++|.++...+..|..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666666666666677777777777776555556666777777777777765
No 138
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=99.61 E-value=9.4e-16 Score=157.62 Aligned_cols=90 Identities=21% Similarity=0.338 Sum_probs=73.4
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||+||+|+. .+|+.||||++...... . ...+.|.+|+++|++++|||||++++++.+++..|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~-~-~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiV 101 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMS-S-KEREESRREVAVLANMKHPNIVQYRESFEENGSLYIV 101 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSC-H-HHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCC-H-HHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEE
Confidence 4688899999999999999964 56899999999764322 2 2456799999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.++|
T Consensus 102 mEy~~gg~L~~~i 114 (350)
T 4b9d_A 102 MDYCEGGDLFKRI 114 (350)
T ss_dssp EECCTTCBHHHHH
T ss_pred EeCCCCCcHHHHH
Confidence 9999999999987
No 139
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=153.99 Aligned_cols=88 Identities=30% Similarity=0.424 Sum_probs=74.3
Q ss_pred hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
.+++...+.||+|+||+||+|++.+ .||||+++.... .....++|.+|+++|++++|||||+++|+|. ++..+||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~--~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~iV 109 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDP--TPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIV 109 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred HHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEEEE
Confidence 3567888999999999999998753 699999975332 2224578999999999999999999999985 4568999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.++|
T Consensus 110 mEy~~gGsL~~~l 122 (307)
T 3omv_A 110 TQWCEGSSLYKHL 122 (307)
T ss_dssp EECCSSCBHHHHH
T ss_pred EEcCCCCCHHHHH
Confidence 9999999999987
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=1.7e-13 Score=145.86 Aligned_cols=328 Identities=9% Similarity=0.029 Sum_probs=202.8
Q ss_pred ccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCcccc
Q 041300 66 TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVC 145 (716)
Q Consensus 66 ~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 145 (716)
.|.+.+|.++.+|+.++|.. .+..+...+|.++++|+.++|..+ ++.+...+|.++.+|+.+.+..+ +......+|.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 46678899999999999974 477677788999999999999765 66566678888888988877654 4445556676
Q ss_pred CCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCC-----CcccCCCCccCEEE
Q 041300 146 QLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFL-----PLSVGNLTNLKSLG 220 (716)
Q Consensus 146 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~-----~~~~~~l~~L~~L~ 220 (716)
++..++...... +.......|.++++|+.+.+.++. .......|.++..|+.+++... ...+.++..|+.+.
T Consensus 138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENME 214 (394)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCC
T ss_pred cccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCCceEeCchhhccccccceee
Confidence 665444333322 233455678888888888887553 3344455666666666554321 12334444454444
Q ss_pred eeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCcCCCc
Q 041300 221 LMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNNLTGN 300 (716)
Q Consensus 221 l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 300 (716)
+..+... . .+.+.....|+.+.+... +.......+.++..|+.+.+..+.. ..
T Consensus 215 ~~~~~~~-i------------------------~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i 267 (394)
T 4fs7_A 215 FPNSLYY-L------------------------GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RI 267 (394)
T ss_dssp CCTTCCE-E------------------------CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EE
T ss_pred cCCCceE-e------------------------ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-ee
Confidence 4333211 1 111222234444444322 2223344556666677776665532 24
Q ss_pred cchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcccCCC
Q 041300 301 ISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKELGKL 380 (716)
Q Consensus 301 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 380 (716)
....|.....++.+....+.+ ....|..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++
T Consensus 268 ~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c 342 (394)
T 4fs7_A 268 GGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC 342 (394)
T ss_dssp CSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred eccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC
Confidence 455666667777776665533 2345667777777777643 55455567777777777777643 555556677777
Q ss_pred CCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCCCEE
Q 041300 381 NSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKLHYL 434 (716)
Q Consensus 381 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 434 (716)
.+|+.+.+..+ ++.+-..+|.++++|+.+++..+ +. ....+|.++++|+.+
T Consensus 343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 78888887766 55555667778888888888654 32 234567777777654
No 141
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=99.58 E-value=9.4e-16 Score=154.89 Aligned_cols=91 Identities=18% Similarity=0.272 Sum_probs=78.6
Q ss_pred cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...++||+|+||+||+|+ ..+++.||||++.+...... ...+.+.+|+++|++++|||||++++++.+++..|+|
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~-~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv 110 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKE-NKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG 110 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCH-HHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 469999999999999999996 45789999999975322111 1346799999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.++|
T Consensus 111 mEy~~gG~L~~~i 123 (311)
T 4aw0_A 111 LSYAKNGELLKYI 123 (311)
T ss_dssp ECCCTTEEHHHHH
T ss_pred EecCCCCCHHHHH
Confidence 9999999999987
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=1.2e-13 Score=146.94 Aligned_cols=81 Identities=7% Similarity=-0.050 Sum_probs=52.5
Q ss_pred ccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeecccccccCCCCcc
Q 041300 88 FFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPF 167 (716)
Q Consensus 88 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 167 (716)
++.+...+|.++++|+.+.|..+ ++.+...+|.++++|+.+++..+ ++.+...+|.++.+|+.+.+..+ +.......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 44555677888888888888643 66566667888888888888654 55455566777777777666543 33344444
Q ss_pred ccCC
Q 041300 168 LGNL 171 (716)
Q Consensus 168 ~~~l 171 (716)
|.+.
T Consensus 136 F~~~ 139 (394)
T 4fs7_A 136 FKGC 139 (394)
T ss_dssp TTTC
T ss_pred eecc
Confidence 5444
No 143
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=99.55 E-value=5.9e-15 Score=148.32 Aligned_cols=88 Identities=25% Similarity=0.393 Sum_probs=73.2
Q ss_pred CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe----CCeee
Q 041300 626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH----AQHSF 700 (716)
Q Consensus 626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~----~~~~~ 700 (716)
|...++||+|+||+||+|.. .++..||||++....... ...+.|.+|++++++++|||||++++++.+ ++..|
T Consensus 28 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~--~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~ 105 (290)
T 3fpq_A 28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK--SERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCH--HHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCH--HHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEE
Confidence 35667899999999999965 468899999997643221 245679999999999999999999999865 34579
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
||||||++|+|.++|
T Consensus 106 lvmEy~~gg~L~~~l 120 (290)
T 3fpq_A 106 LVTELMTSGTLKTYL 120 (290)
T ss_dssp EEEECCCSCBHHHHH
T ss_pred EEEeCCCCCCHHHHH
Confidence 999999999999987
No 144
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=99.54 E-value=5.1e-15 Score=151.91 Aligned_cols=88 Identities=32% Similarity=0.478 Sum_probs=76.8
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
..|...+.||+|+||+||+|.. .+|+.||||++...... ..+.+.+|+++|++++|||||++++++.+++..|||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~----~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iv 149 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ----RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV 149 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCS----SGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchh----HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 4588888999999999999965 46999999999753221 234588999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.+++
T Consensus 150 mEy~~gg~L~~~l 162 (346)
T 4fih_A 150 MEFLEGGALTDIV 162 (346)
T ss_dssp ECCCTTEEHHHHH
T ss_pred EeCCCCCcHHHHH
Confidence 9999999999876
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.4e-14 Score=135.45 Aligned_cols=16 Identities=6% Similarity=0.208 Sum_probs=6.9
Q ss_pred CcCCCCCCEEEccCCc
Q 041300 497 FEGMHGLSIIDISDNQ 512 (716)
Q Consensus 497 ~~~~~~L~~l~ls~N~ 512 (716)
+..+++|+.||+++|.
T Consensus 136 ~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 136 IYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHCTTCSEETTEECC
T ss_pred HHHCCccceeCCCcCC
Confidence 3344444444444444
No 146
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.4e-14 Score=135.50 Aligned_cols=135 Identities=21% Similarity=0.154 Sum_probs=115.4
Q ss_pred cccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCC
Q 041300 352 EIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKL 431 (716)
Q Consensus 352 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 431 (716)
.+..+.+|+.|++++|+++. +|......++|+.|++++|++++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 46678999999999999984 455333344999999999999975 679999999999999999997766667999999
Q ss_pred CEEECcCCcCcccCCh--hhhCCCCCCEEECCCCcCccccch----hccCCCCCCEEECcCCcCcc
Q 041300 432 HYLGLSNNQFVLELPK--ELEKLVQLSELDASHNLFGGEIPF----QICSLKSLEKLNLSHNNLSG 491 (716)
Q Consensus 432 ~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~ls~N~l~~~~p~----~~~~l~~L~~L~ls~N~l~~ 491 (716)
++|++++|++. .+|. .+..+++|+.|++++|.+.. +|. .+..+++|+.|++++|.+..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999996 4555 78899999999999999984 455 48899999999999998764
No 147
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.53 E-value=6.1e-15 Score=150.34 Aligned_cols=87 Identities=31% Similarity=0.408 Sum_probs=69.7
Q ss_pred cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----ee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----HS 699 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----~~ 699 (716)
+++...++||+|+||+||+|++ +|+.||||++... .. ....+.+|+..+.+++|||||+++|+|.+++ ..
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~----~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~ 76 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR----EE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQL 76 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGG----GH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc----ch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEE
Confidence 3567788999999999999988 5889999999652 11 1223445566667899999999999998754 57
Q ss_pred eEEEcccCCCCHHhHhC
Q 041300 700 FLVYEFLERGSLAAILS 716 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l~ 716 (716)
|||||||++|+|.++|+
T Consensus 77 ~lV~Ey~~~gsL~~~l~ 93 (303)
T 3hmm_A 77 WLVSDYHEHGSLFDYLN 93 (303)
T ss_dssp EEEEECCTTCBHHHHHH
T ss_pred EEEecCCCCCcHHHHHH
Confidence 99999999999999873
No 148
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=153.12 Aligned_cols=88 Identities=32% Similarity=0.478 Sum_probs=77.3
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
..|...+.||+|+||+||+|.. .+|+.||||++...... ..+.+.+|+++|++++|||||++++++.+++..|||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~----~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iV 226 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ----RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV 226 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCS----SGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchh----HHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEE
Confidence 4588889999999999999965 46899999999754221 235688999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.+++
T Consensus 227 mEy~~gG~L~~~i 239 (423)
T 4fie_A 227 MEFLEGGALTDIV 239 (423)
T ss_dssp EECCTTEEHHHHH
T ss_pred EeCCCCCcHHHHH
Confidence 9999999999876
No 149
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=99.51 E-value=1.3e-14 Score=144.50 Aligned_cols=90 Identities=22% Similarity=0.347 Sum_probs=72.4
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||+||+|.. .+|+.||||++.+....... ..+.+.+|++++++++|||||++++++.+++..|+|
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~-~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv 91 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSD-MQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHH-HHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence 5799999999999999999974 46899999999764332222 346799999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||| +|+|.+++
T Consensus 92 mEy~-~g~L~~~l 103 (275)
T 3hyh_A 92 IEYA-GNELFDYI 103 (275)
T ss_dssp EECC-CEEHHHHH
T ss_pred EeCC-CCCHHHHH
Confidence 9999 68998876
No 150
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=99.51 E-value=2e-14 Score=145.71 Aligned_cols=88 Identities=22% Similarity=0.446 Sum_probs=72.7
Q ss_pred CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC------
Q 041300 625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ------ 697 (716)
Q Consensus 625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~------ 697 (716)
+|...+.||+|+||+||+|+. .+|+.||||+++... .....+.+.+|+++|++++|||||++++++.+.+
T Consensus 6 dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~ 82 (299)
T 4g31_A 6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN---RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQ 82 (299)
T ss_dssp HEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS---SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC------
T ss_pred hCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccc
Confidence 588889999999999999964 468999999997532 1224567999999999999999999999987644
Q ss_pred ------eeeEEEcccCCCCHHhHh
Q 041300 698 ------HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 ------~~~lv~Ey~~~GsL~~~l 715 (716)
..|+|||||++|+|.+++
T Consensus 83 ~~~~~~~l~ivmE~~~gg~L~~~l 106 (299)
T 4g31_A 83 PSSPKVYLYIQMQLCRKENLKDWM 106 (299)
T ss_dssp ----CEEEEEEEECCCSCCHHHHH
T ss_pred ccCCCcEEEEEEecCCCCcHHHHH
Confidence 368999999999999986
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=2.3e-16 Score=150.85 Aligned_cols=151 Identities=23% Similarity=0.246 Sum_probs=82.5
Q ss_pred CCCCEEEccCCccccccCc------ccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCC
Q 041300 357 SQLQALDLSLNHIVGEIPK------ELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLK 430 (716)
Q Consensus 357 ~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 430 (716)
..++.++++.+.+.+..|. .+..+++|+.|++++|++++ +| .+..+++|+.|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444444444444444333 45555555555555555553 33 4555555555566555555 34444555556
Q ss_pred CCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccc-hhccCCCCCCEEECcCCcCcccCCcC----------CcC
Q 041300 431 LHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIP-FQICSLKSLEKLNLSHNNLSGLIPNC----------FEG 499 (716)
Q Consensus 431 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~~~~----------~~~ 499 (716)
|++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+++.+|.. +..
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 6666666666653 22 45555666666666666654322 34556666666666666665554432 556
Q ss_pred CCCCCEEEccCCccc
Q 041300 500 MHGLSIIDISDNQLQ 514 (716)
Q Consensus 500 ~~~L~~l~ls~N~l~ 514 (716)
+++|+.|| +|+++
T Consensus 173 l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 173 LPNLKKLD--GMPVD 185 (198)
T ss_dssp CSSCSEEC--CGGGT
T ss_pred CCCcEEEC--CcccC
Confidence 66777665 55544
No 152
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=99.50 E-value=1.3e-14 Score=148.50 Aligned_cols=84 Identities=26% Similarity=0.347 Sum_probs=73.6
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
...|...++||+|+||+||+|+. .+|+.||||+++.... +.+|++++++++|||||++++++.+++..||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~---------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~i 127 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF---------RVEELVACAGLSSPRIVPLYGAVREGPWVNI 127 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC---------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEE
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh---------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 34677888999999999999964 4689999999975321 2469999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||++|+|.++|
T Consensus 128 vmEy~~gg~L~~~l 141 (336)
T 4g3f_A 128 FMELLEGGSLGQLI 141 (336)
T ss_dssp EECCCTTCBHHHHH
T ss_pred EEeccCCCcHHHHH
Confidence 99999999999987
No 153
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=99.49 E-value=1.6e-14 Score=149.61 Aligned_cols=97 Identities=23% Similarity=0.395 Sum_probs=79.2
Q ss_pred HHHHHhhcCCcccccccCCCceEEEEEEcCC------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCC-CCcccc
Q 041300 617 DEIVRETNDFDAEYCIGNGGHGSVYRAELPS------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH-RNIVKF 689 (716)
Q Consensus 617 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H-~niv~l 689 (716)
++++...++|...+.||+|+||+||+|.+.. ++.||||++..... ....++|.+|+++|.+++| ||||++
T Consensus 57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~---~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred cccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccC---hHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 4555666789999999999999999997532 35799999976322 1245679999999999965 899999
Q ss_pred ceEEEeC-CeeeEEEcccCCCCHHhHhC
Q 041300 690 YGFCSHA-QHSFLVYEFLERGSLAAILS 716 (716)
Q Consensus 690 ~g~~~~~-~~~~lv~Ey~~~GsL~~~l~ 716 (716)
+|+|.+. +..+||||||++|+|.++|+
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~ 161 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLR 161 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHH
T ss_pred EEEEEecCCEEEEEEEcCCCCCHHHHHH
Confidence 9999765 56899999999999999873
No 154
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=99.49 E-value=5.5e-15 Score=149.32 Aligned_cols=90 Identities=23% Similarity=0.336 Sum_probs=71.5
Q ss_pred cCCcccccccCCCceEEEEEEc----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS 699 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~ 699 (716)
++|...+.||+|+||+||+|+. ..++.||||++.+...... ....+.+|+++|++++|||||++++++.+++..
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~--~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~ 101 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVR--DRVRTKMERDILVEVNHPFIVKLHYAFQTEGKL 101 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEE--ECC------CCCCCCCCTTEECEEEEEEETTEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChH--HHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEE
Confidence 4689999999999999999964 2467999999976432211 234688999999999999999999999999999
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
|+|||||++|+|.++|
T Consensus 102 ~ivmEy~~gg~L~~~l 117 (304)
T 3ubd_A 102 YLILDFLRGGDLFTRL 117 (304)
T ss_dssp EEEECCCTTCEEHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 9999999999999886
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=2.8e-16 Score=150.21 Aligned_cols=132 Identities=23% Similarity=0.236 Sum_probs=75.1
Q ss_pred cccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCccCchhhcCcCCC
Q 041300 352 EIGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKFNNSVPESLGNLLKL 431 (716)
Q Consensus 352 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 431 (716)
.+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 55555555666665555553 34 5555556666666666655 344444445566666666666654 23 45556666
Q ss_pred CEEECcCCcCcccCC-hhhhCCCCCCEEECCCCcCccccch----------hccCCCCCCEEECcCCcCc
Q 041300 432 HYLGLSNNQFVLELP-KELEKLVQLSELDASHNLFGGEIPF----------QICSLKSLEKLNLSHNNLS 490 (716)
Q Consensus 432 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~p~----------~~~~l~~L~~L~ls~N~l~ 490 (716)
+.|++++|+++...+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|| +|.++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 666666666653222 3455666666666666666555443 256677777765 55554
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.9e-13 Score=126.65 Aligned_cols=108 Identities=23% Similarity=0.290 Sum_probs=74.0
Q ss_pred CEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCC
Q 041300 408 EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHN 487 (716)
Q Consensus 408 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N 487 (716)
+.+++++|.++. +|..+ .++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456666666653 34333 256666666666666666666667777777777777777666666677777777777777
Q ss_pred cCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300 488 NLSGLIPNCFEGMHGLSIIDISDNQLQGPVP 518 (716)
Q Consensus 488 ~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p 518 (716)
+|++..+..|..+++|+.|++++|++.+..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 7777766777777788888888888776654
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.6e-13 Score=127.22 Aligned_cols=103 Identities=23% Similarity=0.237 Sum_probs=64.6
Q ss_pred EEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccc
Q 041300 55 NISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFN 134 (716)
Q Consensus 55 ~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 134 (716)
.++++++++.. ++. .+ .+.|++|+|++|.|.++.|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 13 ~l~~s~n~l~~-ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 13 TVDCSGKSLAS-VPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EEECTTSCCSS-CCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45566666652 322 12 256677777777776666666667777777777777776555555666666666666666
Q ss_pred cCccCCCccccCCCCCceeeccccccc
Q 041300 135 ELDGSIPPEVCQLSSIEELFLYSNHLN 161 (716)
Q Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (716)
.|++..+..|..+++|++|+|++|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666555555666666666666666655
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=3.1e-13 Score=125.68 Aligned_cols=104 Identities=22% Similarity=0.256 Sum_probs=69.0
Q ss_pred EEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEccc
Q 041300 54 TNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQF 133 (716)
Q Consensus 54 ~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 133 (716)
+.++++++++. .++. .+ .++|++|+|++|.|.+..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45777777774 4432 22 26677777777777776677777777777777777777765555566777777777777
Q ss_pred ccCccCCCccccCCCCCceeeccccccc
Q 041300 134 NELDGSIPPEVCQLSSIEELFLYSNHLN 161 (716)
Q Consensus 134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (716)
|.|++..+..|..+++|++|+|++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 7776555555666666666666666665
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=4.6e-13 Score=124.55 Aligned_cols=108 Identities=22% Similarity=0.279 Sum_probs=68.2
Q ss_pred CEEEccCCcCCccCchhhcCcCCCCEEECcCCcCcccCChhhhCCCCCCEEECCCCcCccccchhccCCCCCCEEECcCC
Q 041300 408 EYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQFVLELPKELEKLVQLSELDASHNLFGGEIPFQICSLKSLEKLNLSHN 487 (716)
Q Consensus 408 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~N 487 (716)
+.+++++|.+. .+|..+. ++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45555555554 3343332 45666666666666555666666666666666666666555555666777777777777
Q ss_pred cCcccCCcCCcCCCCCCEEEccCCcccccCC
Q 041300 488 NLSGLIPNCFEGMHGLSIIDISDNQLQGPVP 518 (716)
Q Consensus 488 ~l~~~~~~~~~~~~~L~~l~ls~N~l~~~~p 518 (716)
+|+++.+..|..+++|+.|++++|++.+..+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 7776666667777777777777777765543
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=5.8e-11 Score=126.19 Aligned_cols=329 Identities=11% Similarity=0.097 Sum_probs=209.0
Q ss_pred ccCCCCCCCCC-CCcEEECCCCCccccCcccccCCCCCCEEECcCCc---CcccCCccccCCCCCCEEEcccccCccCCC
Q 041300 66 TLRDFSFSSFP-QLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQ---LSGKIPAEVGLLTHLKVLSFQFNELDGSIP 141 (716)
Q Consensus 66 ~~~~~~f~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 141 (716)
.|.+.+|.+.. .|+.+.+..+ ++.+...+|.++++|+.+.+..|. ++.+...+|..+.+|+.+.+..+ ++.+..
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 46677888774 5888888754 666777889999999999888764 66555677888888888877654 454666
Q ss_pred ccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCC-----CCcccCCCCcc
Q 041300 142 PEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSF-----LPLSVGNLTNL 216 (716)
Q Consensus 142 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-----~~~~~~~l~~L 216 (716)
.+|..+.+|+.+.+..+ ++.+....|..+.+|+.+.+..+ ++......|.. ..|+.+.+.. -...+..+.++
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l 207 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFAL 207 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTC
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhcccc
Confidence 77888888888888654 44466677888888888888654 33333444433 3455555432 12234555666
Q ss_pred CEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEEccCCc
Q 041300 217 KSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVRLNGNN 296 (716)
Q Consensus 217 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 296 (716)
+......+.........+.........+ ..+.....+..+.+. +.+.......|.++..|+.+.+..+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~ 276 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYAL----------IRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSV 276 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEE----------EECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTC
T ss_pred ceecccccccccccceeecccccccccc----------cccccccccceEEcC-CcceEcccceeeecccccEEeccccc
Confidence 6665554433321111111100000000 001111223333332 22333445678888899998886543
Q ss_pred CCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCccccccCcc
Q 041300 297 LTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVGEIPKE 376 (716)
Q Consensus 297 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 376 (716)
......+|..++.|+.+.+. +.++......|.+|.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++.....+
T Consensus 277 -~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~a 352 (394)
T 4gt6_A 277 -VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESA 352 (394)
T ss_dssp -CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGG
T ss_pred -ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhH
Confidence 34566778888999999996 4566677788999999999999754 66566778999999999999654 66566678
Q ss_pred cCCCCCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 041300 377 LGKLNSLTKLILRGNQLTGRLPTEIGSLIELEYLDFSANKF 417 (716)
Q Consensus 377 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 417 (716)
|.++.+|+.+++.++.... ..+....+|+.+.+..|.+
T Consensus 353 F~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 353 FSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred hhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 9999999999999886542 4567778888888877655
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=8.5e-11 Score=124.92 Aligned_cols=93 Identities=10% Similarity=0.006 Sum_probs=73.4
Q ss_pred ccccCcccccCCC-CCCEEECcCCcCcccCCccccCCCCCCEEEccccc---CccCCCccccCCCCCceeecccccccCC
Q 041300 88 FFGTIPSQIGNLT-KLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNE---LDGSIPPEVCQLSSIEELFLYSNHLNGS 163 (716)
Q Consensus 88 i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 163 (716)
++.+...+|.++. .|+.+.+..+ ++.+...+|.++++|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4455667888874 6999999864 776778899999999999998774 66566778999999999888765 5556
Q ss_pred CCccccCCcCCcEEEeecc
Q 041300 164 LPPFLGNLSNIVRLYINNN 182 (716)
Q Consensus 164 ~p~~~~~l~~L~~L~L~~n 182 (716)
....|.++.+|+.+.+..+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~ 147 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG 147 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhhcccccccccce
Confidence 7778888899998888644
No 162
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=99.36 E-value=6.7e-13 Score=139.98 Aligned_cols=90 Identities=26% Similarity=0.468 Sum_probs=74.1
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC------
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA------ 696 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~------ 696 (716)
++|...+.||+|+||+||+|.. .+|+.||||+++.... .....+.+.+|+++|++++|||||++++++...
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~--~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~ 131 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFD--VVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEF 131 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECcccc--chHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccC
Confidence 4688899999999999999964 5799999999976432 222456789999999999999999999998643
Q ss_pred CeeeEEEcccCCCCHHhHhC
Q 041300 697 QHSFLVYEFLERGSLAAILS 716 (716)
Q Consensus 697 ~~~~lv~Ey~~~GsL~~~l~ 716 (716)
+..|||||||+ |+|.++++
T Consensus 132 ~~~~ivmE~~~-g~L~~~i~ 150 (398)
T 4b99_A 132 KSVYVVLDLME-SDLHQIIH 150 (398)
T ss_dssp CCEEEEEECCS-EEHHHHHT
T ss_pred CEEEEEEeCCC-CCHHHHHH
Confidence 56799999996 67988763
No 163
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.36 E-value=1e-12 Score=145.61 Aligned_cols=88 Identities=23% Similarity=0.425 Sum_probs=77.8
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||+||+|.. .+|+.||||++.... . ...+.+.+|+++|+.++|||||++++++.+++..|||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~---~-~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv 232 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH---E-SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMI 232 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---H-HHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccc---h-hhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEE
Confidence 4688999999999999999964 568999999997532 1 2456789999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.++|
T Consensus 233 ~E~~~gg~L~~~i 245 (573)
T 3uto_A 233 YEFMSGGELFEKV 245 (573)
T ss_dssp EECCCCCBHHHHH
T ss_pred EeecCCCcHHHHH
Confidence 9999999999887
No 164
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=99.34 E-value=1.3e-12 Score=136.23 Aligned_cols=92 Identities=26% Similarity=0.331 Sum_probs=77.6
Q ss_pred HHHhhcCCcccccccCCCceEEEEEEc----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300 619 IVRETNDFDAEYCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC 693 (716)
Q Consensus 619 ~~~~~~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~ 693 (716)
+....+.|...+.||+|+||+||+|+. ..++.||||++.+.. ....+.+|++++..+ +|||||++++++
T Consensus 16 ~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~------~~~~~~~E~~~l~~~~~h~nIv~l~~~~ 89 (361)
T 4f9c_A 16 VPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS------HPIRIAAELQCLTVAGGQDNVMGVKYCF 89 (361)
T ss_dssp SGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS------CHHHHHHHHHHHHHTCSBTTBCCCSEEE
T ss_pred cCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc------CHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence 334456799999999999999999953 246789999986531 235688999999998 699999999999
Q ss_pred EeCCeeeEEEcccCCCCHHhHhC
Q 041300 694 SHAQHSFLVYEFLERGSLAAILS 716 (716)
Q Consensus 694 ~~~~~~~lv~Ey~~~GsL~~~l~ 716 (716)
.+.+..|+|||||++|+|.++++
T Consensus 90 ~~~~~~~lvmE~~~g~~L~~~~~ 112 (361)
T 4f9c_A 90 RKNDHVVIAMPYLEHESFLDILN 112 (361)
T ss_dssp EETTEEEEEEECCCCCCHHHHHT
T ss_pred EECCEEEEEEeCCCcccHHHHHc
Confidence 99999999999999999998863
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=8.7e-14 Score=145.96 Aligned_cols=88 Identities=27% Similarity=0.263 Sum_probs=42.8
Q ss_pred CCCCCEEEccCCcCCcc----CchhhcCcCCCCEEECcCCcCccc----CChhhhCCCCCCEEECCCCcCcccc----ch
Q 041300 404 LIELEYLDFSANKFNNS----VPESLGNLLKLHYLGLSNNQFVLE----LPKELEKLVQLSELDASHNLFGGEI----PF 471 (716)
Q Consensus 404 l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~----p~ 471 (716)
.++|+.|+|++|.|++. ++..+..+++|++|+|++|.+... ++..+...++|++|+|++|.++... ..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 34555555555555432 222334455555555555555432 1233444455566666666554322 22
Q ss_pred hccCCCCCCEEECcCCcCcc
Q 041300 472 QICSLKSLEKLNLSHNNLSG 491 (716)
Q Consensus 472 ~~~~l~~L~~L~ls~N~l~~ 491 (716)
.+...++|++|+|++|.|+.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 23334556666666665553
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=7.9e-14 Score=146.31 Aligned_cols=143 Identities=19% Similarity=0.146 Sum_probs=86.6
Q ss_pred CCCCEEEcccCcCcccCcccc-cCCCCCCEEEccCCccccccCccc-----CCCCCCcEEEccCCccccc----CCcccC
Q 041300 333 PKLGTLNVSMNNITGGIPREI-GNMSQLQALDLSLNHIVGEIPKEL-----GKLNSLTKLILRGNQLTGR----LPTEIG 402 (716)
Q Consensus 333 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~----~~~~~~ 402 (716)
++|+.|+|++|.++......+ ..+++|+.|+|++|.+++.....+ ...++|+.|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455555555555543222221 233456666666666654333332 2345677777777776532 233345
Q ss_pred CCCCCCEEEccCCcCCccC----chhhcCcCCCCEEECcCCcCccc----CChhhhCCCCCCEEECCCCcCccccchhcc
Q 041300 403 SLIELEYLDFSANKFNNSV----PESLGNLLKLHYLGLSNNQFVLE----LPKELEKLVQLSELDASHNLFGGEIPFQIC 474 (716)
Q Consensus 403 ~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~ 474 (716)
.+++|++|+|++|.|.+.. +..+...++|+.|+|++|.++.. +...+...++|++|||++|.|+......+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 6677888888888776432 44556677888888888888643 334455668899999999988765555444
Q ss_pred C
Q 041300 475 S 475 (716)
Q Consensus 475 ~ 475 (716)
.
T Consensus 261 ~ 261 (372)
T 3un9_A 261 D 261 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 167
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.31 E-value=5.4e-12 Score=129.37 Aligned_cols=103 Identities=30% Similarity=0.537 Sum_probs=88.3
Q ss_pred ccchHHHHHHhhcCCccc------ccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCC
Q 041300 612 GKLVYDEIVRETNDFDAE------YCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN 685 (716)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~------~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~n 685 (716)
..+++.++..++.+|+.. +.||+|+||.||+|.. +++.||||++............+.|.+|++++++++|||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 356788999999998887 8899999999999987 678999999875432222224567999999999999999
Q ss_pred ccccceEEEeCCeeeEEEcccCCCCHHhHh
Q 041300 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 686 iv~l~g~~~~~~~~~lv~Ey~~~GsL~~~l 715 (716)
|+++++++.+.+..++||||+++|+|.+++
T Consensus 92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l 121 (307)
T 2nru_A 92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRL 121 (307)
T ss_dssp BCCEEEEECSSSSCEEEEECCTTCBHHHHH
T ss_pred eEEEEEEEecCCceEEEEEecCCCcHHHHH
Confidence 999999999999999999999999999876
No 168
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=99.31 E-value=1.6e-12 Score=143.37 Aligned_cols=92 Identities=20% Similarity=0.197 Sum_probs=74.0
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccc--hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQ--IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~--~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
++|...++||+|+||+||+|+. .+|+.||||++.+...... .........++++++.++|||||++++++.+++..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 5799999999999999999964 4689999999975321111 111222344567788999999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||+||+|.++|
T Consensus 269 lVmEy~~GGdL~~~l 283 (689)
T 3v5w_A 269 FILDLMNGGDLHYHL 283 (689)
T ss_dssp EEECCCCSCBHHHHH
T ss_pred EEEecCCCCcHHHHH
Confidence 999999999999887
No 169
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.31 E-value=1.5e-12 Score=134.85 Aligned_cols=101 Identities=31% Similarity=0.636 Sum_probs=87.5
Q ss_pred ccchHHHHHHhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccce
Q 041300 612 GKLVYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691 (716)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g 691 (716)
..+++.++....++|...+.||+|+||.||+|...+++.||||++....... ....|.+|++++++++|||||++++
T Consensus 18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~---~~~~~~~e~~~l~~l~h~~iv~~~~ 94 (326)
T 3uim_A 18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQG---GELQFQTEVEMISMAVHRNLLRLRG 94 (326)
T ss_dssp EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC--------CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCch---HHHHHHHHHHHHHhccCCCccceEE
Confidence 4567889999999999999999999999999988789999999997632211 2236899999999999999999999
Q ss_pred EEEeCCeeeEEEcccCCCCHHhHh
Q 041300 692 FCSHAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 692 ~~~~~~~~~lv~Ey~~~GsL~~~l 715 (716)
++..++..++|||||++|+|.+++
T Consensus 95 ~~~~~~~~~lv~e~~~~~~L~~~l 118 (326)
T 3uim_A 95 FCMTPTERLLVYPYMANGSVASCL 118 (326)
T ss_dssp EECCSSCCEEEEECCTTCBHHHHH
T ss_pred EEecCCceEEEEEeccCCCHHHHH
Confidence 999999999999999999999876
No 170
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.30 E-value=1.5e-12 Score=134.58 Aligned_cols=97 Identities=33% Similarity=0.617 Sum_probs=84.3
Q ss_pred hHHHHHHhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEE
Q 041300 615 VYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCS 694 (716)
Q Consensus 615 ~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~ 694 (716)
++.++...+.+|...+.||+|+||.||+|...+++.||||++..... ...+.|.+|++++++++|||||++++++.
T Consensus 30 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~ 105 (321)
T 2qkw_B 30 PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESS----QGIEEFETEIETLSFCRHPHLVSLIGFCD 105 (321)
T ss_dssp CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCS----SHHHHHHHHHHGGGSCCCTTBCCEEEECC
T ss_pred cHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccCh----HHHHHHHHHHHHHHhCCCCCEeeEEEEEc
Confidence 33445566789999999999999999999988899999999875321 14567999999999999999999999999
Q ss_pred eCCeeeEEEcccCCCCHHhHh
Q 041300 695 HAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 695 ~~~~~~lv~Ey~~~GsL~~~l 715 (716)
..+..++||||+++|+|.+++
T Consensus 106 ~~~~~~lv~e~~~~~~L~~~l 126 (321)
T 2qkw_B 106 ERNEMILIYKYMENGNLKRHL 126 (321)
T ss_dssp CTTCCEEEEECCTTCBTGGGS
T ss_pred CCCeEEEEEEcCCCCcHHHHH
Confidence 999999999999999999886
No 171
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.28 E-value=6.1e-12 Score=127.39 Aligned_cols=92 Identities=14% Similarity=0.129 Sum_probs=79.4
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
+.|...+.||+|+||.||+|... +++.||||++........ ...+.|.+|++.+.+++|||||++++++..++..|+|
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~-~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 109 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPD-DVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV 109 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCH-HHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCH-HHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence 46888999999999999999754 488999999986433222 2457799999999999999999999999999999999
Q ss_pred EcccCCCCHHhHhC
Q 041300 703 YEFLERGSLAAILS 716 (716)
Q Consensus 703 ~Ey~~~GsL~~~l~ 716 (716)
|||+++|+|.++++
T Consensus 110 ~e~~~g~~L~~~l~ 123 (286)
T 3uqc_A 110 AEWIRGGSLQEVAD 123 (286)
T ss_dssp EECCCEEEHHHHHT
T ss_pred EEecCCCCHHHHHh
Confidence 99999999999863
No 172
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.28 E-value=8.5e-12 Score=128.70 Aligned_cols=101 Identities=27% Similarity=0.386 Sum_probs=83.1
Q ss_pred ccchHHHHHHhhcC----------CcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhc
Q 041300 612 GKLVYDEIVRETND----------FDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE 680 (716)
Q Consensus 612 ~~~~~~~~~~~~~~----------~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~ 680 (716)
..++++++..+++. |...+.||+|+||.||+|... +|+.||||++..... ...+.+.+|+.++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~----~~~~~~~~E~~~l~~ 98 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQ----QRRELLFNEVVIMRD 98 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----CSHHHHHHHHHHHTT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccch----hHHHHHHHHHHHHHh
Confidence 34566776666543 666778999999999999765 689999999975321 134678999999999
Q ss_pred CCCCCccccceEEEeCCeeeEEEcccCCCCHHhHhC
Q 041300 681 IRHRNIVKFYGFCSHAQHSFLVYEFLERGSLAAILS 716 (716)
Q Consensus 681 l~H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~~l~ 716 (716)
++|||||++++++...+..++||||+++|+|.++++
T Consensus 99 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~ 134 (321)
T 2c30_A 99 YQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVS 134 (321)
T ss_dssp CCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHT
T ss_pred CCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHH
Confidence 999999999999999999999999999999998763
No 173
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=9e-12 Score=130.15 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=74.8
Q ss_pred cceeeeeeCCCCCEEEEEcCCC-CCccccCCCCCCCCCCCcEEECCC-CCccccCcccccCCCCCCEEECcCCcCcccCC
Q 041300 40 CAWYGISCNDAGRVTNISLRNT-GLSGTLRDFSFSSFPQLVHLDLSL-NGFFGTIPSQIGNLTKLSYISLDSNQLSGKIP 117 (716)
Q Consensus 40 c~w~gv~c~~~~~v~~l~l~~~-~l~~~~~~~~f~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 117 (716)
|.|..|.|. ++ ++. .++. +..+++|++|+|++ |.|.++.+..|.++++|++|+|++|+|++..|
T Consensus 8 C~~~~v~~~-----------~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 8 HGSSGLRCT-----------RDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp SSSSCEECC-----------SSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred ccCCEEEcC-----------CCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH
Confidence 666666664 33 454 3433 77777788888875 77777777777788888888888888877777
Q ss_pred ccccCCCCCCEEEcccccCccCCCccccCCCCCceeeccccccc
Q 041300 118 AEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYSNHLN 161 (716)
Q Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (716)
..|+.|++|++|+|++|.|++..+..|..+. |+.|+|.+|.+.
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7777777777777777777765555555554 666666666664
No 174
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.26 E-value=9.9e-12 Score=128.42 Aligned_cols=91 Identities=22% Similarity=0.355 Sum_probs=79.0
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.++|...+.||+|+||.||+|.. .+|+.||||++...... ....+.+.+|+++++.++|||||++++++...+..|+
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l 91 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLN--PTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYL 91 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCC--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEE
Confidence 45789999999999999999964 57899999999764321 1245678999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||++|+|.+++
T Consensus 92 v~e~~~~~~L~~~l 105 (328)
T 3fe3_A 92 IMEYASGGEVFDYL 105 (328)
T ss_dssp EECCCTTCBHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 99999999999876
No 175
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.25 E-value=5.1e-12 Score=133.20 Aligned_cols=89 Identities=25% Similarity=0.492 Sum_probs=76.7
Q ss_pred cCCcccccccCCCceEEEEEEcC----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS 699 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~ 699 (716)
.+|...++||+|+||.||+|+.. ++..||||+++... . ....++|.+|++++++++|||||+++|++.+++..
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~--~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 121 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY--T-EKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPV 121 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC--C-HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc--C-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCce
Confidence 47889999999999999999754 46789999997532 1 22456899999999999999999999999998999
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++|||||++|+|.+++
T Consensus 122 ~lv~e~~~~~sL~~~l 137 (373)
T 2qol_A 122 MIVTEYMENGSLDSFL 137 (373)
T ss_dssp EEEEECCTTCBHHHHH
T ss_pred EEEEeCCCCCcHHHHH
Confidence 9999999999999986
No 176
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=1.6e-11 Score=128.34 Aligned_cols=104 Identities=16% Similarity=0.130 Sum_probs=94.6
Q ss_pred EEECCCC-CccccCcccccCCCCCCEEECcC-CcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCceeeccc
Q 041300 80 HLDLSLN-GFFGTIPSQIGNLTKLSYISLDS-NQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIEELFLYS 157 (716)
Q Consensus 80 ~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (716)
.++++++ ++.. +|. |..+++|++|+|++ |.|++..+..|+.|++|++|+|++|.|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4688888 8875 666 99999999999996 999988888999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccCCcCCcEEEeecccccc
Q 041300 158 NHLNGSLPPFLGNLSNIVRLYINNNSLSG 186 (716)
Q Consensus 158 N~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 186 (716)
|.|++..+..|..++ |+.|+|.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999988888888776 9999999998863
No 177
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.23 E-value=1.2e-11 Score=128.65 Aligned_cols=90 Identities=29% Similarity=0.468 Sum_probs=77.5
Q ss_pred hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.+.|...+.||+|+||+||+|. ..+|+.||||++....... ....+.+|++++++++|||||++++++...+..++
T Consensus 9 ~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~---~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~l 85 (347)
T 3zgw_A 9 LKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGS---DLPRIKTEIEALKNLRHQHICQLYHVLETANKIFM 85 (347)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC------CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred hcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccch---HHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEE
Confidence 4678899999999999999996 4578999999997643221 23468999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||++|+|.+++
T Consensus 86 v~E~~~gg~L~~~l 99 (347)
T 3zgw_A 86 VLEYCPGGELFDYI 99 (347)
T ss_dssp EEECCTTCBHHHHH
T ss_pred EEeCCCCCCHHHHH
Confidence 99999999999876
No 178
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.23 E-value=6.6e-12 Score=128.73 Aligned_cols=92 Identities=37% Similarity=0.484 Sum_probs=79.2
Q ss_pred HhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 621 RETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 621 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
....+|...+.||+|+||.||+|+. .++.||||++..... .....++|.+|++++++++|||||++++++...+..+
T Consensus 34 i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 110 (309)
T 3p86_A 34 IPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDF--HAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLS 110 (309)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCC--SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCE
T ss_pred CChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceE
Confidence 3346788899999999999999986 678899999976432 1224567999999999999999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++|+|.+++
T Consensus 111 lv~e~~~~~~L~~~l 125 (309)
T 3p86_A 111 IVTEYLSRGSLYRLL 125 (309)
T ss_dssp EEEECCTTCBHHHHH
T ss_pred EEEecCCCCcHHHHH
Confidence 999999999999876
No 179
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.23 E-value=2.2e-11 Score=125.03 Aligned_cols=88 Identities=26% Similarity=0.484 Sum_probs=77.4
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...++||+|+||+||+|.. .+++.||+|++... . ....+.|.+|++++.+++|||||++++++.+++..++|
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~---~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 85 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF---D-EETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFI 85 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC---C-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC---C-HHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEE
Confidence 4688889999999999999975 46899999998542 2 22457899999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 86 ~e~~~~~~L~~~l 98 (310)
T 3s95_A 86 TEYIKGGTLRGII 98 (310)
T ss_dssp EECCTTCBHHHHH
T ss_pred EEecCCCcHHHHH
Confidence 9999999999886
No 180
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.23 E-value=1.3e-11 Score=123.98 Aligned_cols=87 Identities=26% Similarity=0.507 Sum_probs=77.8
Q ss_pred cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY 703 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~ 703 (716)
.+|...+.||+|+||.||+|...++..||||++..... ..+++.+|++++++++||||+++++++.+++..++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 84 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVF 84 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-----CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEE
Confidence 46888899999999999999887888999999975321 3467999999999999999999999999989999999
Q ss_pred cccCCCCHHhHh
Q 041300 704 EFLERGSLAAIL 715 (716)
Q Consensus 704 Ey~~~GsL~~~l 715 (716)
||+++|+|.+++
T Consensus 85 e~~~~~~L~~~l 96 (269)
T 4hcu_A 85 EFMEHGCLSDYL 96 (269)
T ss_dssp ECCTTCBHHHHH
T ss_pred EeCCCCcHHHHH
Confidence 999999999886
No 181
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.23 E-value=3.8e-12 Score=136.47 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=81.5
Q ss_pred HHHHHHhhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEE
Q 041300 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCS 694 (716)
Q Consensus 616 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~ 694 (716)
+.++....++|...++||+|+||+||+|+.. +++.||||++.+...... .....+.+|+.++..++|||||+++++|.
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~-~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 144 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKR-AETACFREERDVLVNGDSKWITTLHYAFQ 144 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHT-TTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhH-HHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 4455566788999999999999999999765 478899999965211111 01234889999999999999999999999
Q ss_pred eCCeeeEEEcccCCCCHHhHh
Q 041300 695 HAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 695 ~~~~~~lv~Ey~~~GsL~~~l 715 (716)
+++..|+|||||++|+|.+++
T Consensus 145 ~~~~~~lV~Ey~~gg~L~~~l 165 (437)
T 4aw2_A 145 DDNNLYLVMDYYVGGDLLTLL 165 (437)
T ss_dssp CSSEEEEEECCCTTCBHHHHH
T ss_pred eCCEEEEEEecCCCCcHHHHH
Confidence 999999999999999999886
No 182
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=127.68 Aligned_cols=89 Identities=27% Similarity=0.504 Sum_probs=76.3
Q ss_pred cCCcccccccCCCceEEEEEEcC----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS 699 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~ 699 (716)
..|...+.||+|+||.||+|... .+..||||++.... .....+.|.+|++++++++|||||++++++.+++..
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 125 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY---TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLA 125 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCC
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCcc
Confidence 46788899999999999999764 34569999997532 122456799999999999999999999999988899
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++|||||++|+|.+++
T Consensus 126 ~lv~e~~~~~~L~~~l 141 (325)
T 3kul_A 126 MIVTEYMENGSLDTFL 141 (325)
T ss_dssp EEEEECCTTCBHHHHH
T ss_pred EEEeeCCCCCcHHHHH
Confidence 9999999999999886
No 183
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.22 E-value=1.3e-11 Score=129.95 Aligned_cols=90 Identities=24% Similarity=0.475 Sum_probs=76.6
Q ss_pred hcCCcccccccCCCceEEEEEEc--------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL--------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC 693 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~--------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~ 693 (716)
.++|...+.||+|+||.||+|+. .++..||||++.... .....+++.+|+++++++ +|||||+++++|
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~ 156 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---TEKDLSDLVSEMEMMKMIGKHKNIINLLGAC 156 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC---BHHHHHHHHHHHHHHHHSCCCTTBCCEEEEE
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc---CHHHHHHHHHHHHHHHHhcCCCCEeeEEEEE
Confidence 35688889999999999999964 234579999997532 222456799999999999 899999999999
Q ss_pred EeCCeeeEEEcccCCCCHHhHh
Q 041300 694 SHAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 694 ~~~~~~~lv~Ey~~~GsL~~~l 715 (716)
.+.+..|+||||+++|+|.+++
T Consensus 157 ~~~~~~~lv~e~~~~g~L~~~l 178 (370)
T 2psq_A 157 TQDGPLYVIVEYASKGNLREYL 178 (370)
T ss_dssp CSSSSCEEEEECCTTCBHHHHH
T ss_pred ccCCCEEEEEEcCCCCCHHHHH
Confidence 9999999999999999999986
No 184
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.22 E-value=6.2e-12 Score=132.91 Aligned_cols=91 Identities=29% Similarity=0.526 Sum_probs=78.4
Q ss_pred hhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
..++|...+.||+|+||.||+|... +++.||||++.... .....++|.+|++++++++|||||+++|+|..++..+
T Consensus 112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 188 (377)
T 3cbl_A 112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL---PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIY 188 (377)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS---CHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC---CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcE
Confidence 3457888999999999999999875 68999999987532 1113457899999999999999999999999888999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++|+|.+++
T Consensus 189 lv~e~~~~g~L~~~l 203 (377)
T 3cbl_A 189 IVMELVQGGDFLTFL 203 (377)
T ss_dssp EEEECCTTCBHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 999999999999886
No 185
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=99.22 E-value=1.9e-11 Score=127.94 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=78.6
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccc--hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQ--IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~--~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
+.|...+.||+|+||.||++... +|+.||||++........ ....+.+.+|++++.+++|||||++++++.+++..|
T Consensus 12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~ 91 (361)
T 2yab_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVV 91 (361)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEE
Confidence 46888999999999999999654 689999999976432211 113467999999999999999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++|+|.+++
T Consensus 92 lv~e~~~gg~L~~~l 106 (361)
T 2yab_A 92 LILELVSGGELFDFL 106 (361)
T ss_dssp EEEECCCSCBHHHHH
T ss_pred EEEEcCCCCcHHHHH
Confidence 999999999999986
No 186
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.22 E-value=2.1e-11 Score=124.11 Aligned_cols=91 Identities=25% Similarity=0.355 Sum_probs=78.4
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
+.|...+.||+|+||.||+|.. .++..||||++........ ...+.|.+|+.++.+++|||||++++++.+++..|+|
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKE-ETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCH-HHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccH-HHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 4688899999999999999964 4689999999865332222 2456799999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 90 ~e~~~g~~L~~~l 102 (294)
T 4eqm_A 90 MEYIEGPTLSEYI 102 (294)
T ss_dssp EECCCSCBHHHHH
T ss_pred EeCCCCCCHHHHH
Confidence 9999999999876
No 187
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=99.22 E-value=4e-12 Score=135.20 Aligned_cols=98 Identities=17% Similarity=0.294 Sum_probs=80.1
Q ss_pred HHHHHhhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe
Q 041300 617 DEIVRETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH 695 (716)
Q Consensus 617 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~ 695 (716)
.++.....+|...++||+|+||+||+|+.. +++.||||++.+...... ...+.+.+|+.+++.++|||||++++++.+
T Consensus 62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~-~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~ 140 (410)
T 3v8s_A 62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKR-SDSAFFWEERDIMAFANSPWVVQLFYAFQD 140 (410)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHT-CCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhh-HHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence 344455678999999999999999999754 588999999865211110 012348899999999999999999999999
Q ss_pred CCeeeEEEcccCCCCHHhHh
Q 041300 696 AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 696 ~~~~~lv~Ey~~~GsL~~~l 715 (716)
++..|+|||||++|+|.+++
T Consensus 141 ~~~~~lV~E~~~gg~L~~~l 160 (410)
T 3v8s_A 141 DRYLYMVMEYMPGGDLVNLM 160 (410)
T ss_dssp SSEEEEEECCCTTEEHHHHH
T ss_pred CCEEEEEEeCCCCCcHHHHH
Confidence 99999999999999999876
No 188
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=99.21 E-value=2.1e-11 Score=126.42 Aligned_cols=71 Identities=25% Similarity=0.515 Sum_probs=58.2
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ 697 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~ 697 (716)
.+|...+.||+|+||.||+|+.. +++.||||++..... . ...+.+.+|++++++++|||||++++++.+.+
T Consensus 6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~--~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~ 77 (332)
T 3qd2_B 6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR--E-LAREKVMREVKALAKLEHPGIVRYFNAWLETP 77 (332)
T ss_dssp HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCST--T-THHHHHHHHHHHHTSCCCTTBCCEEEEEEECC
T ss_pred hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCc--h-hHHHHHHHHHHHHHhCCCCCEeeEEEEEEEec
Confidence 46888899999999999999765 789999999975321 1 24577999999999999999999999986643
No 189
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=99.21 E-value=1.1e-11 Score=128.25 Aligned_cols=92 Identities=24% Similarity=0.399 Sum_probs=71.9
Q ss_pred cCCcccccccCCCceEEEEEEc----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS 699 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~ 699 (716)
.+|...++||+|+||.||+++. .+++.||||++.+............+.+|++++++++|||||++++++..++..
T Consensus 17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 96 (327)
T 3a62_A 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL 96 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence 5688999999999999999975 468899999997643222222345688999999999999999999999999999
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
|+|||||++|+|.+++
T Consensus 97 ~lv~e~~~~~~L~~~l 112 (327)
T 3a62_A 97 YLILEYLSGGELFMQL 112 (327)
T ss_dssp EEEEECCTTEEHHHHH
T ss_pred EEEEeCCCCCcHHHHH
Confidence 9999999999998876
No 190
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.21 E-value=2.3e-11 Score=123.99 Aligned_cols=89 Identities=24% Similarity=0.418 Sum_probs=77.6
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
...|...+.||+|+||+||+|.. .+++.||||++...... ..+.+.+|+.++++++|||||++++++..++..++
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~----~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l 94 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP----KKELIINEILVMRENKNPNIVNYLDSYLVGDELWV 94 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCS----CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccccc----HHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEE
Confidence 35688999999999999999974 56899999998653211 34678999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||++|+|.+++
T Consensus 95 v~e~~~~~~L~~~~ 108 (297)
T 3fxz_A 95 VMEYLAGGSLTDVV 108 (297)
T ss_dssp EEECCTTCBHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 99999999999876
No 191
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.20 E-value=6.8e-12 Score=133.50 Aligned_cols=99 Identities=22% Similarity=0.288 Sum_probs=81.6
Q ss_pred HHHHHHhhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEE
Q 041300 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCS 694 (716)
Q Consensus 616 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~ 694 (716)
+.+.....++|...++||+|+||+||+++.. +++.||||++.+...... ...+.+.+|+.++.+++|||||++++++.
T Consensus 53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~-~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 131 (412)
T 2vd5_A 53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKR-GEVSCFREERDVLVNGDRRWITQLHFAFQ 131 (412)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHH-GGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhH-HHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence 3445556788999999999999999999764 689999999965211111 12234889999999999999999999999
Q ss_pred eCCeeeEEEcccCCCCHHhHh
Q 041300 695 HAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 695 ~~~~~~lv~Ey~~~GsL~~~l 715 (716)
+.+..|+|||||++|+|.+++
T Consensus 132 ~~~~~~lVmE~~~gg~L~~~l 152 (412)
T 2vd5_A 132 DENYLYLVMEYYVGGDLLTLL 152 (412)
T ss_dssp CSSEEEEEECCCCSCBHHHHH
T ss_pred eCCEEEEEEcCCCCCcHHHHH
Confidence 999999999999999999886
No 192
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.20 E-value=2.3e-11 Score=123.08 Aligned_cols=88 Identities=24% Similarity=0.479 Sum_probs=75.5
Q ss_pred hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
..+|...+.||+|+||.||+|...++..||||++..... ..+++.+|++++.+++||||+++++++.+++..++|
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 97 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-----SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFII 97 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEE
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-----CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEE
Confidence 457888899999999999999988888999999975321 346799999999999999999999999998999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 98 ~e~~~~~~L~~~l 110 (283)
T 3gen_A 98 TEYMANGCLLNYL 110 (283)
T ss_dssp ECCCTTCBHHHHH
T ss_pred EeccCCCcHHHHH
Confidence 9999999999886
No 193
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.20 E-value=1.8e-11 Score=132.63 Aligned_cols=89 Identities=25% Similarity=0.443 Sum_probs=77.9
Q ss_pred HhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 621 RETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 621 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
....+|...+.||+|+||+||+|...++..||||+++... ...++|.+|+++|++++|||||++++++. .+..+
T Consensus 185 i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~ 258 (454)
T 1qcf_A 185 IPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-----MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIY 258 (454)
T ss_dssp CCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-----BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCE
T ss_pred echHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-----ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccE
Confidence 3456788899999999999999998888899999997532 13578999999999999999999999986 66789
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++|+|.+++
T Consensus 259 lv~e~~~~g~L~~~l 273 (454)
T 1qcf_A 259 IITEFMAKGSLLDFL 273 (454)
T ss_dssp EEECCCTTCBHHHHH
T ss_pred EEEeecCCCcHHHHH
Confidence 999999999999987
No 194
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.19 E-value=2e-11 Score=122.33 Aligned_cols=88 Identities=28% Similarity=0.485 Sum_probs=78.1
Q ss_pred hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
..+|...+.||+|+||.||+|...++..||||++..... ..+++.+|++++.+++|||||++++++.+++..++|
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 81 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-----SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIV 81 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEE
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-----cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEE
Confidence 356888899999999999999988888899999975321 346799999999999999999999999988899999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 82 ~e~~~~~~L~~~l 94 (268)
T 3sxs_A 82 TEYISNGCLLNYL 94 (268)
T ss_dssp EECCTTCBHHHHH
T ss_pred EEccCCCcHHHHH
Confidence 9999999999876
No 195
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=99.19 E-value=2.4e-11 Score=127.38 Aligned_cols=91 Identities=20% Similarity=0.346 Sum_probs=78.3
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.++|...+.||+|+||.||+|.. .+++.||||++...... ....+.+.+|++++++++|||||++++++.+++..|+
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l 105 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS--ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL 105 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence 34688999999999999999965 46899999999764321 1244678999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||++|+|.+++
T Consensus 106 v~e~~~gg~L~~~l 119 (362)
T 2bdw_A 106 VFDLVTGGELFEDI 119 (362)
T ss_dssp EECCCCSCBHHHHH
T ss_pred EEecCCCCCHHHHH
Confidence 99999999998876
No 196
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=99.19 E-value=3.1e-11 Score=124.79 Aligned_cols=92 Identities=21% Similarity=0.303 Sum_probs=78.2
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccc--hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQ--IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~--~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
+.|...+.||+|+||.||++... ++..||||++........ ....+.+.+|++++.+++|||||++++++.+++..+
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 90 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 90 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 45888899999999999999754 689999999976432211 113567999999999999999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++|+|.+++
T Consensus 91 lv~e~~~~~~L~~~l 105 (326)
T 2y0a_A 91 LILELVAGGELFDFL 105 (326)
T ss_dssp EEEECCCSCBHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 999999999999986
No 197
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=99.19 E-value=1.8e-11 Score=126.93 Aligned_cols=91 Identities=23% Similarity=0.288 Sum_probs=77.2
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...++||+|+||+||+++.. +++.||||++.+...... .....+.+|+.++++++|||||++++++.+.+..|+|
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAK-DEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhh-hHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 56888999999999999999754 689999999975321111 1345688999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.+++
T Consensus 84 ~E~~~gg~L~~~l 96 (337)
T 1o6l_A 84 MEYANGGELFFHL 96 (337)
T ss_dssp EECCTTCBHHHHH
T ss_pred EeCCCCCcHHHHH
Confidence 9999999998876
No 198
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.19 E-value=1.4e-11 Score=135.04 Aligned_cols=89 Identities=30% Similarity=0.552 Sum_probs=78.3
Q ss_pred hhcCCcccccccCCCceEEEEEEcCC-CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAELPS-GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~~~~-~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
...+|...+.||+|+||.||+|.... +..||||++..... ..++|.+|+++|++++|||||+++|+|...+..+
T Consensus 218 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 292 (495)
T 1opk_A 218 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-----EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY 292 (495)
T ss_dssp CGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred CHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-----chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEE
Confidence 34568888999999999999998754 78999999975321 3467999999999999999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++|+|.+++
T Consensus 293 lv~E~~~~g~L~~~l 307 (495)
T 1opk_A 293 IITEFMTYGNLLDYL 307 (495)
T ss_dssp EEEECCTTCBHHHHH
T ss_pred EEEEccCCCCHHHHH
Confidence 999999999999987
No 199
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=99.19 E-value=3.7e-11 Score=123.86 Aligned_cols=89 Identities=20% Similarity=0.252 Sum_probs=77.3
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.+.|...+.||+|+||.||+|... ++..||+|.+... . .....+.+|+++++.++|||||++++++.+.+..++
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~----~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 78 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK----G-TDQVLVKKEISILNIARHRNILHLHESFESMEELVM 78 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC----T-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC----c-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEE
Confidence 356888999999999999999654 5889999998642 1 134568999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHhC
Q 041300 702 VYEFLERGSLAAILS 716 (716)
Q Consensus 702 v~Ey~~~GsL~~~l~ 716 (716)
|||||++|+|.+++.
T Consensus 79 v~e~~~g~~L~~~l~ 93 (321)
T 1tki_A 79 IFEFISGLDIFERIN 93 (321)
T ss_dssp EECCCCCCBHHHHHT
T ss_pred EEEeCCCCCHHHHHH
Confidence 999999999998863
No 200
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.18 E-value=2.3e-11 Score=131.67 Aligned_cols=89 Identities=26% Similarity=0.503 Sum_probs=77.4
Q ss_pred hhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
...+|...+.||+|+||.||+|...++..||||++..... ..++|.+|+++|++++|||||++++++.+ +..++
T Consensus 182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~i 255 (452)
T 1fmk_A 182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYI 255 (452)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEE
T ss_pred ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-----CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEE
Confidence 3456888999999999999999988778899999976321 34679999999999999999999999865 67899
Q ss_pred EEcccCCCCHHhHhC
Q 041300 702 VYEFLERGSLAAILS 716 (716)
Q Consensus 702 v~Ey~~~GsL~~~l~ 716 (716)
|||||++|+|.++++
T Consensus 256 v~e~~~~gsL~~~l~ 270 (452)
T 1fmk_A 256 VTEYMSKGSLLDFLK 270 (452)
T ss_dssp EECCCTTCBHHHHHS
T ss_pred EehhhcCCCHHHHHH
Confidence 999999999999874
No 201
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.18 E-value=1.4e-11 Score=123.75 Aligned_cols=89 Identities=19% Similarity=0.354 Sum_probs=76.7
Q ss_pred cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--CeeeE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--QHSFL 701 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~~~~l 701 (716)
.+|...+.||+|+||.||+|.. +++.||||++..... .....++|.+|++++++++|||||++++++.+. +..++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 86 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDW--STRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTL 86 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTC--CHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEE
T ss_pred HHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEeccccc--CHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEe
Confidence 4688889999999999999987 488999999976422 122456799999999999999999999999876 67899
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+++|+|.+++
T Consensus 87 v~e~~~~~~L~~~l 100 (271)
T 3kmu_A 87 ITHWMPYGSLYNVL 100 (271)
T ss_dssp EEECCTTCBHHHHH
T ss_pred eecccCCCcHHHHH
Confidence 99999999999986
No 202
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=99.18 E-value=1.9e-11 Score=125.68 Aligned_cols=91 Identities=24% Similarity=0.402 Sum_probs=77.1
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
.+|...++||+|+||+||+++.. +|+.||||++.+...... ...+.+.+|+.+++.++|||||++++++.+.+..|+|
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRL-KQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhh-hHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 56888999999999999999754 689999999975321111 1345688999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.+++
T Consensus 85 ~e~~~gg~L~~~l 97 (318)
T 1fot_A 85 MDYIEGGELFSLL 97 (318)
T ss_dssp ECCCCSCBHHHHH
T ss_pred EeCCCCCCHHHHH
Confidence 9999999999886
No 203
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=99.18 E-value=2.4e-11 Score=126.15 Aligned_cols=94 Identities=24% Similarity=0.418 Sum_probs=78.6
Q ss_pred HHHhhcCCcccccccCCCceEEEEEEcCC------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccce
Q 041300 619 IVRETNDFDAEYCIGNGGHGSVYRAELPS------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYG 691 (716)
Q Consensus 619 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g 691 (716)
+.....+|...+.||+|+||.||+|.... ...||||.+.... .....+.+.+|+++++++ +|||||++++
T Consensus 41 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~iv~~~~ 117 (333)
T 2i1m_A 41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA---HADEKEALMSELKIMSHLGQHENIVNLLG 117 (333)
T ss_dssp GBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred ccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc---ChHHHHHHHHHHHHHHhhcCCCCeeeEEE
Confidence 33445778999999999999999997532 2479999997532 122456799999999999 8999999999
Q ss_pred EEEeCCeeeEEEcccCCCCHHhHh
Q 041300 692 FCSHAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 692 ~~~~~~~~~lv~Ey~~~GsL~~~l 715 (716)
++..++..++||||+++|+|.+++
T Consensus 118 ~~~~~~~~~lv~e~~~~g~L~~~l 141 (333)
T 2i1m_A 118 ACTHGGPVLVITEYCCYGDLLNFL 141 (333)
T ss_dssp EECSSSSCEEEEECCTTEEHHHHH
T ss_pred EEecCCceEEEEecCCCCcHHHHH
Confidence 999999999999999999999886
No 204
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.17 E-value=2e-11 Score=122.63 Aligned_cols=91 Identities=32% Similarity=0.466 Sum_probs=72.5
Q ss_pred cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY 703 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~ 703 (716)
.+|...+.||+|+||.||+|.. .+..||||++............+.+.+|+++++.++||||+++++++..++..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 5688899999999999999986 478999999875432222223467999999999999999999999999999999999
Q ss_pred cccCCCCHHhHh
Q 041300 704 EFLERGSLAAIL 715 (716)
Q Consensus 704 Ey~~~GsL~~~l 715 (716)
||+++|+|.+++
T Consensus 86 e~~~~~~L~~~~ 97 (271)
T 3dtc_A 86 EFARGGPLNRVL 97 (271)
T ss_dssp ECCTTEEHHHHH
T ss_pred EcCCCCCHHHHh
Confidence 999999999876
No 205
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=99.17 E-value=4.3e-11 Score=124.56 Aligned_cols=91 Identities=23% Similarity=0.329 Sum_probs=77.7
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l 701 (716)
.+|...++||+|+||+||+++.. +++.||||++.+...... ...+.+.+|+.++.++ +|||||++++++.+.+..|+
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 87 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDD-EDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 87 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSH-HHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcch-HHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence 46888999999999999999754 588999999976433222 2446688999999988 89999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||++|+|.+++
T Consensus 88 v~e~~~gg~L~~~l 101 (345)
T 3a8x_A 88 VIEYVNGGDLMFHM 101 (345)
T ss_dssp EECCCCSCBHHHHH
T ss_pred EEeCCCCCcHHHHH
Confidence 99999999998876
No 206
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.17 E-value=3.2e-11 Score=125.68 Aligned_cols=93 Identities=29% Similarity=0.487 Sum_probs=79.3
Q ss_pred HHhhcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEE
Q 041300 620 VRETNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFC 693 (716)
Q Consensus 620 ~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~ 693 (716)
....++|...+.||+|+||.||+|+.. +++.||||++.... .....+.|.+|++++++++|||||++++++
T Consensus 43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~ 119 (343)
T 1luf_A 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA---SADMQADFQREAALMAEFDNPNIVKLLGVC 119 (343)
T ss_dssp BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc---CHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 344568999999999999999999753 34789999997532 122456799999999999999999999999
Q ss_pred EeCCeeeEEEcccCCCCHHhHh
Q 041300 694 SHAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 694 ~~~~~~~lv~Ey~~~GsL~~~l 715 (716)
..++..++||||+++|+|.+++
T Consensus 120 ~~~~~~~lv~e~~~~~~L~~~l 141 (343)
T 1luf_A 120 AVGKPMCLLFEYMAYGDLNEFL 141 (343)
T ss_dssp CSSSSCEEEEECCTTCBHHHHH
T ss_pred ccCCceEEEEecCCCCcHHHHH
Confidence 9999999999999999999986
No 207
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.17 E-value=2e-11 Score=126.00 Aligned_cols=89 Identities=27% Similarity=0.377 Sum_probs=75.0
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||+||+|... +++.||||++...... ...+.+.+|+.+++.++|||||++++++.+++..|+|
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv 83 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV---DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF 83 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEccccc---chHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 57888999999999999999654 6899999998653211 1235689999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.+++
T Consensus 84 ~e~~~~~~L~~~l 96 (323)
T 3tki_A 84 LEYCSGGELFDRI 96 (323)
T ss_dssp EECCTTEEGGGGS
T ss_pred EEcCCCCcHHHHH
Confidence 9999999999876
No 208
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.17 E-value=1.2e-11 Score=130.00 Aligned_cols=97 Identities=23% Similarity=0.410 Sum_probs=79.8
Q ss_pred HHHHHHhhcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccc
Q 041300 616 YDEIVRETNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVK 688 (716)
Q Consensus 616 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~ 688 (716)
...+....++|...+.||+|+||.||+|++ .+++.||||++.... .....+.|.+|++++.++ +|||||+
T Consensus 14 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hpniv~ 90 (359)
T 3vhe_A 14 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA---THSEHRALMSELKILIHIGHHLNVVN 90 (359)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred cccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcC---CHHHHHHHHHHHHHHHhhcCCcceee
Confidence 345555677899999999999999999963 245789999997532 122346799999999999 8999999
Q ss_pred cceEEEeCCe-eeEEEcccCCCCHHhHh
Q 041300 689 FYGFCSHAQH-SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 689 l~g~~~~~~~-~~lv~Ey~~~GsL~~~l 715 (716)
+++++.+.+. .++|||||++|+|.+++
T Consensus 91 ~~~~~~~~~~~~~iv~e~~~~g~L~~~l 118 (359)
T 3vhe_A 91 LLGACTKPGGPLMVIVEFCKFGNLSTYL 118 (359)
T ss_dssp EEEEECSTTSCCEEEEECCTTEEHHHHH
T ss_pred eeeeeecCCCceEEEEEecCCCcHHHHH
Confidence 9999987654 89999999999999987
No 209
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=99.17 E-value=2.3e-11 Score=127.11 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=76.5
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCc-cchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPC-DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~-~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
+.|...+.||+|+||.||+|.. .+++.||||++...... ......+.+.+|+++++.++|||||++++++.+.+..|+
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 103 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM 103 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 4588899999999999999964 46899999998642111 011134679999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||++|+|.+++
T Consensus 104 v~e~~~g~~L~~~l 117 (351)
T 3c0i_A 104 VFEFMDGADLCFEI 117 (351)
T ss_dssp EEECCSSCBHHHHH
T ss_pred EEeCCCCCCHHHHH
Confidence 99999999998765
No 210
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.17 E-value=2.8e-11 Score=127.33 Aligned_cols=89 Identities=27% Similarity=0.477 Sum_probs=76.3
Q ss_pred cCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ 697 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~ 697 (716)
.+|...+.||+|+||+||+|.+. ++..||||++.... ......+|.+|+.++++++|||||++++++.+.+
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~ 147 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC---SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL 147 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccccc---ChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence 56888899999999999999753 35689999997532 1224567999999999999999999999999988
Q ss_pred eeeEEEcccCCCCHHhHh
Q 041300 698 HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 ~~~lv~Ey~~~GsL~~~l 715 (716)
..++|||||++|+|.+++
T Consensus 148 ~~~lv~e~~~~g~L~~~l 165 (367)
T 3l9p_A 148 PRFILLELMAGGDLKSFL 165 (367)
T ss_dssp SCEEEEECCTTEEHHHHH
T ss_pred CCEEEEEeCCCCCHHHHH
Confidence 999999999999999886
No 211
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.16 E-value=2.6e-11 Score=126.50 Aligned_cols=96 Identities=24% Similarity=0.313 Sum_probs=79.6
Q ss_pred HHhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCcc-chhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300 620 VRETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCD-QIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ 697 (716)
Q Consensus 620 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~-~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~ 697 (716)
....++|...+.||+|+||.||+|.. .++..||||++....... .....+.+.+|++++++++|||||++++++.+.+
T Consensus 22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~ 101 (345)
T 3hko_A 22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ 101 (345)
T ss_dssp HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC
Confidence 34456799999999999999999965 468899999986431110 1113467999999999999999999999999999
Q ss_pred eeeEEEcccCCCCHHhHh
Q 041300 698 HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 ~~~lv~Ey~~~GsL~~~l 715 (716)
..++|||||++|+|.+++
T Consensus 102 ~~~lv~e~~~gg~L~~~l 119 (345)
T 3hko_A 102 YICLVMELCHGGHLLDKL 119 (345)
T ss_dssp EEEEEEECCCSCBHHHHE
T ss_pred eEEEEEeCCCCCcHHHHH
Confidence 999999999999999876
No 212
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.16 E-value=4e-11 Score=126.28 Aligned_cols=86 Identities=22% Similarity=0.419 Sum_probs=69.2
Q ss_pred CcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEc
Q 041300 626 FDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYE 704 (716)
Q Consensus 626 ~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~E 704 (716)
+...++||+|+||.||+|.. .+|+.||||++.... ....++|.+|++++++++|||||++++++...+..++|||
T Consensus 91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E 166 (373)
T 2x4f_A 91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRG----MKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVME 166 (373)
T ss_dssp EEEEEECC-----CEEEEEETTTCCEEEEEEEECCS----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred eecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc----cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEe
Confidence 34466899999999999964 468999999997632 1245679999999999999999999999999999999999
Q ss_pred ccCCCCHHhHh
Q 041300 705 FLERGSLAAIL 715 (716)
Q Consensus 705 y~~~GsL~~~l 715 (716)
||++|+|.+++
T Consensus 167 ~~~~~~L~~~l 177 (373)
T 2x4f_A 167 YVDGGELFDRI 177 (373)
T ss_dssp CCTTCEEHHHH
T ss_pred CCCCCcHHHHH
Confidence 99999998875
No 213
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.16 E-value=3.3e-11 Score=130.38 Aligned_cols=87 Identities=29% Similarity=0.531 Sum_probs=76.1
Q ss_pred hhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC-eee
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ-HSF 700 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~-~~~ 700 (716)
...+|...+.||+|+||.||+|.+. ++.||||+++... ..+.|.+|+++|++++|||||++++++...+ ..+
T Consensus 191 ~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 263 (450)
T 1k9a_A 191 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLY 263 (450)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT------TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEE
T ss_pred ChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch------HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceE
Confidence 3467888899999999999999874 7799999997532 3367999999999999999999999997765 689
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++|+|.+++
T Consensus 264 iv~e~~~~g~L~~~l 278 (450)
T 1k9a_A 264 IVTEYMAKGSLVDYL 278 (450)
T ss_dssp EEEECCTTCBHHHHH
T ss_pred EEEEecCCCcHHHHH
Confidence 999999999999987
No 214
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=99.16 E-value=5.6e-11 Score=120.33 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=77.3
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
+.|...+.||+|+||.||++.. .++..||||++...... ...+.+.+|++++++++|||||++++++.+.+..++|
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 98 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQ---VPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIV 98 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCC---SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccc---hhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEE
Confidence 4588899999999999999965 46889999998764321 1356799999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 99 ~e~~~~~~L~~~l 111 (285)
T 3is5_A 99 METCEGGELLERI 111 (285)
T ss_dssp ECCCSCCBHHHHH
T ss_pred EEeCCCCcHHHHH
Confidence 9999999998875
No 215
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=99.16 E-value=2.3e-11 Score=128.12 Aligned_cols=91 Identities=20% Similarity=0.353 Sum_probs=77.1
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...++||+|+||.||++... +++.||||++.+...... ...+.+.+|++++++++|||||++++++.+.+..|+|
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~-~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVER-NEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccH-HHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 46888999999999999999654 588999999865321111 1346788999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.+++
T Consensus 94 ~e~~~gg~L~~~l 106 (384)
T 4fr4_A 94 VDLLLGGDLRYHL 106 (384)
T ss_dssp ECCCTTEEHHHHH
T ss_pred EecCCCCcHHHHH
Confidence 9999999998876
No 216
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.15 E-value=3.1e-11 Score=133.42 Aligned_cols=90 Identities=26% Similarity=0.489 Sum_probs=77.9
Q ss_pred HhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 621 RETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 621 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
.....|...+.||+|+||.||+|.+.++..||||++..... ..++|.+|+++|++++|||||++++++.+ +..+
T Consensus 264 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~ 337 (535)
T 2h8h_A 264 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIY 337 (535)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred cchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-----CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccce
Confidence 34456888999999999999999988778899999976321 34679999999999999999999999865 6789
Q ss_pred EEEcccCCCCHHhHhC
Q 041300 701 LVYEFLERGSLAAILS 716 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l~ 716 (716)
+|||||++|+|.++|+
T Consensus 338 lv~e~~~~gsL~~~l~ 353 (535)
T 2h8h_A 338 IVTEYMSKGSLLDFLK 353 (535)
T ss_dssp EEECCCTTEEHHHHHS
T ss_pred EeeehhcCCcHHHHHh
Confidence 9999999999999874
No 217
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=99.15 E-value=3.1e-11 Score=125.85 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=77.4
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||+||+++.. +|+.||||++.+...... ...+.+.+|++++++++|||||++++++.+.+..|+|
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKL-KQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccH-HHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 46888999999999999999754 689999999865321111 1346788999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 120 ~e~~~gg~L~~~l 132 (350)
T 1rdq_E 120 MEYVAGGEMFSHL 132 (350)
T ss_dssp EECCTTCBHHHHH
T ss_pred EcCCCCCcHHHHH
Confidence 9999999999876
No 218
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=99.15 E-value=3.9e-11 Score=125.26 Aligned_cols=87 Identities=26% Similarity=0.405 Sum_probs=70.8
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.+.|...+.||+|+||.||+|... +++.||||++.... ..+.+.+|++++.+++|||||++++++..++..++
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 125 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV------DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISL 125 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------------CHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch------hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEE
Confidence 456888999999999999999765 57899999997531 23568899999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+++|+|.+++
T Consensus 126 v~e~~~~~~L~~~l 139 (349)
T 2w4o_A 126 VLELVTGGELFDRI 139 (349)
T ss_dssp EECCCCSCBHHHHH
T ss_pred EEEeCCCCCHHHHH
Confidence 99999999999876
No 219
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.15 E-value=3.4e-11 Score=129.51 Aligned_cols=91 Identities=20% Similarity=0.337 Sum_probs=76.3
Q ss_pred hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.++|...+.||+|+||.||++. ..+|+.||+|++..... .....+.+.+|++++++++|||||++++++.+++..|+
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l 87 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKL--SARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL 87 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSC--HHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence 3568889999999999999995 45788999999976432 11245679999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||++|+|.+++
T Consensus 88 v~E~~~gg~L~~~i 101 (444)
T 3soa_A 88 IFDLVTGGELFEDI 101 (444)
T ss_dssp EECCCBCCBHHHHH
T ss_pred EEEeCCCCCHHHHH
Confidence 99999999998875
No 220
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=99.15 E-value=6.1e-11 Score=124.37 Aligned_cols=88 Identities=24% Similarity=0.330 Sum_probs=77.0
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
...|...+.||+|+||.||+++.. +++.||||++..... ..+.+.+|+.++++++|||||++++++.+++..++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l 93 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-----IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAI 93 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-----SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-----ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEE
Confidence 356889999999999999999754 689999999975322 22568899999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||++|+|.+++
T Consensus 94 v~e~~~~~~L~~~l 107 (361)
T 3uc3_A 94 IMEYASGGELYERI 107 (361)
T ss_dssp EEECCCSCBHHHHH
T ss_pred EEEeCCCCCHHHHH
Confidence 99999999999876
No 221
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.15 E-value=9.3e-11 Score=120.29 Aligned_cols=92 Identities=27% Similarity=0.438 Sum_probs=77.3
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
..+|...+.||+|+||.||+|.. .+++.||||++........ ....++.+|++++++++||||+++++++...+..++
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 109 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDA-KARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNI 109 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCH-HHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEE
Confidence 35688999999999999999974 5789999999975332222 245679999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+++|+|.+++
T Consensus 110 v~e~~~~~~L~~~l 123 (310)
T 2wqm_A 110 VLELADAGDLSRMI 123 (310)
T ss_dssp EEECCCSCBHHHHH
T ss_pred EEecCCCCCHHHHH
Confidence 99999999999876
No 222
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.15 E-value=4.9e-11 Score=119.45 Aligned_cols=87 Identities=26% Similarity=0.480 Sum_probs=77.7
Q ss_pred cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY 703 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~ 703 (716)
.+|...+.||+|+||.||+|...++..||||++..... ..+++.+|++++++++||||+++++++.+++..++||
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 82 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVT 82 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-----CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEE
Confidence 46888899999999999999887888999999976321 3367999999999999999999999999989999999
Q ss_pred cccCCCCHHhHh
Q 041300 704 EFLERGSLAAIL 715 (716)
Q Consensus 704 Ey~~~GsL~~~l 715 (716)
||+++|+|.+++
T Consensus 83 e~~~~~~L~~~~ 94 (267)
T 3t9t_A 83 EFMEHGCLSDYL 94 (267)
T ss_dssp CCCTTCBHHHHH
T ss_pred eCCCCCcHHHHH
Confidence 999999999886
No 223
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=99.15 E-value=5.8e-11 Score=126.07 Aligned_cols=90 Identities=20% Similarity=0.249 Sum_probs=78.5
Q ss_pred cCCcccccccCC--CceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 624 NDFDAEYCIGNG--GHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 624 ~~~~~~~~ig~g--~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
++|...++||+| +||.||+|+.. +++.||||++...... ....+.+.+|++++++++|||||++++++.+++..+
T Consensus 25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 102 (389)
T 3gni_B 25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACS--NEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW 102 (389)
T ss_dssp GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccC--hHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence 568899999999 99999999754 6899999999764321 224567889999999999999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++|+|.+++
T Consensus 103 lv~e~~~~~~L~~~l 117 (389)
T 3gni_B 103 VVTSFMAYGSAKDLI 117 (389)
T ss_dssp EEEECCTTCBHHHHH
T ss_pred EEEEccCCCCHHHHH
Confidence 999999999999876
No 224
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=99.14 E-value=7.8e-11 Score=124.42 Aligned_cols=88 Identities=20% Similarity=0.351 Sum_probs=77.0
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
+.|...+.||+|+||.||+|.. .+++.||+|++.... . .....+.+|++++.+++|||||++++++.+.+..++|
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~---~-~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 126 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY---P-LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI 126 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS---H-HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc---h-hhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEE
Confidence 4688899999999999999965 468899999987532 1 1345789999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.+++
T Consensus 127 ~E~~~gg~L~~~l 139 (387)
T 1kob_A 127 LEFLSGGELFDRI 139 (387)
T ss_dssp EECCCCCBHHHHT
T ss_pred EEcCCCCcHHHHH
Confidence 9999999999886
No 225
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=99.14 E-value=6.6e-11 Score=121.94 Aligned_cols=89 Identities=26% Similarity=0.447 Sum_probs=75.5
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC--eee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ--HSF 700 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~--~~~ 700 (716)
..|...++||+|+||+||+|... +++.||||++...... ...+.+.+|++++++++|||||++++++...+ ..+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 85 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL---RPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV 85 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGG---SCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEecccccc---chHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEE
Confidence 46888899999999999999754 5899999999753221 13467889999999999999999999998765 679
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+||||+++|+|.+++
T Consensus 86 lv~e~~~~~~L~~~l 100 (319)
T 4euu_A 86 LIMEFCPCGSLYTVL 100 (319)
T ss_dssp EEEECCTTCBHHHHH
T ss_pred EEEeCCCCCCHHHHH
Confidence 999999999999876
No 226
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=99.14 E-value=7.1e-11 Score=119.64 Aligned_cols=90 Identities=26% Similarity=0.474 Sum_probs=78.1
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l 701 (716)
.+|...+.||+|+||.||+|... +++.||||++....... ....++.+|+..+.++ +|||||++++++.+++..++
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGS--VDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTS--HHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEeccccccc--HHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 56888999999999999999754 68999999997643222 2456789999999999 99999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+++|+|.+++
T Consensus 89 v~e~~~~~~L~~~l 102 (289)
T 1x8b_A 89 QNEYCNGGSLADAI 102 (289)
T ss_dssp EEECCTTCBHHHHH
T ss_pred EEEecCCCcHHHHH
Confidence 99999999999886
No 227
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.14 E-value=4.3e-11 Score=123.49 Aligned_cols=87 Identities=30% Similarity=0.421 Sum_probs=73.6
Q ss_pred hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----e
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ----H 698 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~----~ 698 (716)
..+|...++||+|+||+||+|+.. ++.||||++... . .....+.+|+.++.+++|||||++++++..+. .
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~----~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 96 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQ----D-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVD 96 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGG----G-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecC----c-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCce
Confidence 357889999999999999999874 789999998652 1 13355677999999999999999999998754 3
Q ss_pred eeEEEcccCCCCHHhHh
Q 041300 699 SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 ~~lv~Ey~~~GsL~~~l 715 (716)
.++|||||++|+|.+++
T Consensus 97 ~~lv~e~~~~g~L~~~l 113 (322)
T 3soc_A 97 LWLITAFHEKGSLSDFL 113 (322)
T ss_dssp EEEEEECCTTCBHHHHH
T ss_pred EEEEEecCCCCCHHHHH
Confidence 69999999999999886
No 228
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.14 E-value=3.1e-11 Score=130.73 Aligned_cols=92 Identities=25% Similarity=0.364 Sum_probs=78.0
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||+||+|... +|+.||||++....... ......+.+|+++++.++|||||++++++..++..|+|
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~-~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRS-LDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHH-TTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 56888999999999999999754 68999999996532111 11345789999999999999999999999999999999
Q ss_pred EcccCCCCHHhHhC
Q 041300 703 YEFLERGSLAAILS 716 (716)
Q Consensus 703 ~Ey~~~GsL~~~l~ 716 (716)
||||++|+|.+++.
T Consensus 95 ~E~~~gg~L~~~l~ 108 (476)
T 2y94_A 95 MEYVSGGELFDYIC 108 (476)
T ss_dssp EECCSSEEHHHHTT
T ss_pred EeCCCCCcHHHHHH
Confidence 99999999999873
No 229
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=99.14 E-value=3.8e-11 Score=125.28 Aligned_cols=92 Identities=23% Similarity=0.399 Sum_probs=76.8
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~ 700 (716)
.++|...++||+|+||+||+|+.. +++.||||++.+...... ...+.+.+|+.++..+ +|||||++++++.+.+..|
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~-~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQD-DDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHH-TTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcch-hHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 467999999999999999999754 689999999975321111 1345688999999988 7999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++|+|.+++
T Consensus 101 lv~E~~~gg~L~~~l 115 (353)
T 3txo_A 101 FVMEFVNGGDLMFHI 115 (353)
T ss_dssp EEEECCCSCBHHHHH
T ss_pred EEEeCCCCCcHHHHH
Confidence 999999999999876
No 230
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=99.14 E-value=5.4e-11 Score=122.28 Aligned_cols=90 Identities=27% Similarity=0.504 Sum_probs=77.0
Q ss_pred hcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA 696 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~ 696 (716)
..+|...+.||+|+||.||+|.. .++..||||++.... .....+.+.+|++++++++|||||++++++.+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 98 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA---SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQD 98 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC---CHHHHHHHHHHHHHHhhCCCCceeeEEEEEecC
Confidence 45688889999999999999964 245789999997532 122456799999999999999999999999999
Q ss_pred CeeeEEEcccCCCCHHhHh
Q 041300 697 QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 ~~~~lv~Ey~~~GsL~~~l 715 (716)
+..++||||+++|+|.+++
T Consensus 99 ~~~~lv~e~~~~~~L~~~l 117 (314)
T 2ivs_A 99 GPLLLIVEYAKYGSLRGFL 117 (314)
T ss_dssp SSCEEEEECCTTCBHHHHH
T ss_pred CceEEEEeecCCCCHHHHH
Confidence 9999999999999999886
No 231
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=99.13 E-value=3e-11 Score=124.02 Aligned_cols=91 Identities=23% Similarity=0.322 Sum_probs=76.1
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe----
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH---- 698 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~---- 698 (716)
+.|...+.||+|+||.||+++. .+++.||||++........ .....|.+|++++.+++|||||++++++.....
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDP-SFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSH-HHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCH-HHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 5688899999999999999974 5788999999976432222 244679999999999999999999999876543
Q ss_pred eeEEEcccCCCCHHhHh
Q 041300 699 SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 ~~lv~Ey~~~GsL~~~l 715 (716)
.|+||||+++|+|.+++
T Consensus 91 ~~lv~e~~~g~~L~~~l 107 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIV 107 (311)
T ss_dssp EEEEEECCCEEEHHHHH
T ss_pred cEEEEecCCCCCHHHHH
Confidence 39999999999999886
No 232
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=99.13 E-value=4.3e-11 Score=126.47 Aligned_cols=92 Identities=22% Similarity=0.309 Sum_probs=75.9
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~ 700 (716)
..+|...++||+|+||+||+++.. +++.||||++++....... ..+.+.+|+.++.++ +|||||++++++.+++..|
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~-~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 129 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDE-DIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF 129 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC-----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHH-HHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEE
Confidence 357889999999999999999754 5789999999764322221 234588899999877 8999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++|+|.+++
T Consensus 130 lV~E~~~gg~L~~~l 144 (396)
T 4dc2_A 130 FVIEYVNGGDLMFHM 144 (396)
T ss_dssp EEEECCTTCBHHHHH
T ss_pred EEEEcCCCCcHHHHH
Confidence 999999999998876
No 233
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=99.13 E-value=3.5e-11 Score=125.06 Aligned_cols=93 Identities=22% Similarity=0.376 Sum_probs=77.1
Q ss_pred hhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCee
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHS 699 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~ 699 (716)
...+|...++||+|+||+||+|+.. +++.||||++.+...... .....+.+|.+++..+ +|||||++++++.+.+..
T Consensus 15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMD-DDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhh-hhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 4567999999999999999999764 588999999975321111 1345678899999877 999999999999999999
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
|+|||||++|+|.+++
T Consensus 94 ~lv~E~~~gg~L~~~l 109 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHI 109 (345)
T ss_dssp EEEEECCTTCBHHHHH
T ss_pred EEEEeCCCCCcHHHHH
Confidence 9999999999999876
No 234
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.13 E-value=5.2e-11 Score=121.22 Aligned_cols=88 Identities=36% Similarity=0.561 Sum_probs=74.5
Q ss_pred cCCcccccccCCCceEEEEEEc-----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-- 696 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-- 696 (716)
..|...+.||+|+||.||+|++ .+++.||||++... . ....+.|.+|++++.+++|||||++++++...
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~---~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 85 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS---T-EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR 85 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC---C-HHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHH
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC---C-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC
Confidence 5688899999999999999974 25789999998753 1 22456799999999999999999999999654
Q ss_pred CeeeEEEcccCCCCHHhHh
Q 041300 697 QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 ~~~~lv~Ey~~~GsL~~~l 715 (716)
...++|||||++|+|.+++
T Consensus 86 ~~~~lv~e~~~~~~L~~~l 104 (295)
T 3ugc_A 86 RNLKLIMEYLPYGSLRDYL 104 (295)
T ss_dssp TSCEEEEECCTTCBHHHHH
T ss_pred CceEEEEEeCCCCCHHHHH
Confidence 4579999999999999886
No 235
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=99.12 E-value=2.8e-11 Score=124.91 Aligned_cols=95 Identities=24% Similarity=0.451 Sum_probs=79.8
Q ss_pred HHHHhhcCCcccccccCCCceEEEEEEcC------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccce
Q 041300 618 EIVRETNDFDAEYCIGNGGHGSVYRAELP------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYG 691 (716)
Q Consensus 618 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g 691 (716)
++....++|...+.||+|+||.||+|... .+..||||++.... .......|.+|++++++++||||+++++
T Consensus 19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~ 95 (322)
T 1p4o_A 19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA---SMRERIEFLNEASVMKEFNCHHVVRLLG 95 (322)
T ss_dssp TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS---CHHHHHHHHHHHHHGGGCCCTTBCCEEE
T ss_pred hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc---CHHHHHHHHHHHHHHHhcCCCCEeeeEE
Confidence 33445677999999999999999999643 36789999997532 1224467999999999999999999999
Q ss_pred EEEeCCeeeEEEcccCCCCHHhHh
Q 041300 692 FCSHAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 692 ~~~~~~~~~lv~Ey~~~GsL~~~l 715 (716)
++.+++..++||||+++|+|.+++
T Consensus 96 ~~~~~~~~~lv~e~~~~~~L~~~l 119 (322)
T 1p4o_A 96 VVSQGQPTLVIMELMTRGDLKSYL 119 (322)
T ss_dssp EECSSSSCEEEEECCTTCBHHHHH
T ss_pred EEccCCccEEEEEeCCCCcHHHHH
Confidence 999989999999999999999886
No 236
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.12 E-value=2.7e-11 Score=122.92 Aligned_cols=90 Identities=30% Similarity=0.538 Sum_probs=78.5
Q ss_pred HhhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300 621 RETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS 699 (716)
Q Consensus 621 ~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~ 699 (716)
....+|...+.||+|+||.||+|... ++..||||++.... ...+.|.+|++++++++||||+++++++.+++..
T Consensus 10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 84 (288)
T 3kfa_A 10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF 84 (288)
T ss_dssp CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-----THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSE
T ss_pred ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-----HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCE
Confidence 34567889999999999999999765 47889999987531 1456799999999999999999999999999999
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++||||+++|+|.+++
T Consensus 85 ~~v~e~~~~~~L~~~~ 100 (288)
T 3kfa_A 85 YIITEFMTYGNLLDYL 100 (288)
T ss_dssp EEEEECCTTEEHHHHH
T ss_pred EEEEEcCCCCcHHHHH
Confidence 9999999999999886
No 237
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.12 E-value=4.5e-11 Score=131.43 Aligned_cols=92 Identities=23% Similarity=0.324 Sum_probs=77.7
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
..+|...++||+|+||+||+|... +|+.||||++.+...... .....+.+|++++.+++|||||++++++.+.+..|+
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~-~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~l 261 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKR-KGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCL 261 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhh-HHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEE
Confidence 456888999999999999999754 689999999965321111 134568899999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||++|+|.+++
T Consensus 262 VmEy~~gg~L~~~l 275 (576)
T 2acx_A 262 VLTLMNGGDLKFHI 275 (576)
T ss_dssp EECCCCSCBHHHHH
T ss_pred EEEcCCCCcHHHHH
Confidence 99999999999876
No 238
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=99.12 E-value=6.8e-11 Score=122.70 Aligned_cols=90 Identities=24% Similarity=0.485 Sum_probs=75.9
Q ss_pred hcCCcccccccCCCceEEEEEEc--------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL--------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC 693 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~--------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~ 693 (716)
.++|...+.||+|+||.||+|.. .++..||||++.... .....+.+.+|+++++++ +||||+++++++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 110 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---TEKDLSDLVSEMEMMKMIGKHKNIINLLGAC 110 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC---cHHHHHHHHHHHHHHHHhhcCCCEeeEEEEE
Confidence 45788899999999999999975 246789999997532 122456799999999999 899999999999
Q ss_pred EeCCeeeEEEcccCCCCHHhHh
Q 041300 694 SHAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 694 ~~~~~~~lv~Ey~~~GsL~~~l 715 (716)
...+..++||||+++|+|.+++
T Consensus 111 ~~~~~~~lv~e~~~~~~L~~~l 132 (334)
T 2pvf_A 111 TQDGPLYVIVEYASKGNLREYL 132 (334)
T ss_dssp CSSSCCEEEEECCTTCBHHHHH
T ss_pred ccCCceEEEEECCCCCcHHHHH
Confidence 9999999999999999999886
No 239
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=99.12 E-value=9.9e-11 Score=120.73 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=78.3
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccc--hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQ--IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~--~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
+.|...+.||+|+||.||+|... +++.||||++........ ....+++.+|++++.+++||||+++++++.+.+..+
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 91 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV 91 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence 45888999999999999999754 689999999976432221 113567999999999999999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+||||+++|+|.+++
T Consensus 92 lv~e~~~~~~L~~~l 106 (321)
T 2a2a_A 92 LILELVSGGELFDFL 106 (321)
T ss_dssp EEECCCCSCBHHHHH
T ss_pred EEEEcCCCCcHHHHH
Confidence 999999999999886
No 240
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.12 E-value=6.5e-11 Score=121.47 Aligned_cols=90 Identities=27% Similarity=0.454 Sum_probs=74.4
Q ss_pred hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
.++|...+.||+|+||+||+|...+++.||||++....... .....+.+|++++++++|||||++++++.+++..++|
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 97 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDE--GIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLV 97 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC--------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccc--hhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEE
Confidence 35788899999999999999988789999999997532211 1346789999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++ +|.+++
T Consensus 98 ~e~~~~-~l~~~~ 109 (311)
T 3niz_A 98 FEFMEK-DLKKVL 109 (311)
T ss_dssp EECCSE-EHHHHH
T ss_pred EcCCCC-CHHHHH
Confidence 999985 776654
No 241
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=99.12 E-value=1e-10 Score=118.21 Aligned_cols=92 Identities=23% Similarity=0.342 Sum_probs=78.1
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccc--hhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQ--IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~--~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
+.|...+.||+|+||.||++... +++.||||.+........ ....+.+.+|++++++++||||+++++++..++..+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 35888899999999999999765 689999999875432211 113577999999999999999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+||||+++|+|.+++
T Consensus 85 lv~e~~~~~~L~~~l 99 (283)
T 3bhy_A 85 LILELVSGGELFDFL 99 (283)
T ss_dssp EEEECCCSCBHHHHH
T ss_pred EEEeecCCCcHHHHH
Confidence 999999999999876
No 242
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=99.12 E-value=7.7e-11 Score=125.37 Aligned_cols=90 Identities=26% Similarity=0.443 Sum_probs=76.1
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC--eee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ--HSF 700 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~--~~~ 700 (716)
..|...++||+|+||+||+|... +++.||||++...... ...+.+.+|++++++++|||||++++++...+ ..+
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 85 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFL---RPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV 85 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGG---SCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEecccccc---chHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeE
Confidence 46888999999999999999754 5899999999753211 13467889999999999999999999998765 679
Q ss_pred EEEcccCCCCHHhHhC
Q 041300 701 LVYEFLERGSLAAILS 716 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l~ 716 (716)
+|||||++|+|.++++
T Consensus 86 lv~e~~~~g~L~~~l~ 101 (396)
T 4eut_A 86 LIMEFCPCGSLYTVLE 101 (396)
T ss_dssp EEECCCTTEEHHHHTT
T ss_pred EEEecCCCCCHHHHHH
Confidence 9999999999998873
No 243
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=99.12 E-value=1.1e-10 Score=118.75 Aligned_cols=91 Identities=22% Similarity=0.364 Sum_probs=78.0
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
..|...+.||+|+||.||++... +++.||+|++........ ...+.+.+|++++++++|||||++++++.+.+..++|
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKP-HQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSH-HHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCH-HHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 56888999999999999999754 578999999875432222 2456799999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 94 ~e~~~~~~L~~~~ 106 (294)
T 2rku_A 94 LELCRRRSLLELH 106 (294)
T ss_dssp EECCTTCBHHHHH
T ss_pred EecCCCCCHHHHH
Confidence 9999999998875
No 244
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.12 E-value=9.4e-11 Score=119.76 Aligned_cols=84 Identities=32% Similarity=0.536 Sum_probs=70.7
Q ss_pred cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhc--CCCCCccccceEEEeCC----
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE--IRHRNIVKFYGFCSHAQ---- 697 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~--l~H~niv~l~g~~~~~~---- 697 (716)
+.|...+.||+|+||.||+|+. +++.||||++... ....+.+|.+++.. ++||||+++++++...+
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 74 (303)
T 3gxj_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR-------EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT 74 (303)
T ss_dssp GGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-T-------THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSE
T ss_pred ceeeehhhccCCCCeEEEEEEE-cCcceEEEEeccc-------chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccc
Confidence 4688899999999999999986 4889999998642 33567888888887 79999999999998876
Q ss_pred eeeEEEcccCCCCHHhHh
Q 041300 698 HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 ~~~lv~Ey~~~GsL~~~l 715 (716)
..++|||||++|+|.+++
T Consensus 75 ~~~lv~e~~~~g~L~~~l 92 (303)
T 3gxj_A 75 QLWLVSDYHEHGSLFDYL 92 (303)
T ss_dssp EEEEEEECCTTCCHHHHH
T ss_pred eeEEEEeccCCCCHHHHH
Confidence 789999999999999986
No 245
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.12 E-value=4.7e-11 Score=120.44 Aligned_cols=88 Identities=23% Similarity=0.463 Sum_probs=76.0
Q ss_pred hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
...|...+.||+|+||.||+|...++..||||++..... ..+.|.+|++++++++||||+++++++. .+..++|
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v 85 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-----SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYII 85 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEE
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-----cHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEE
Confidence 356888999999999999999987788999999875321 3467999999999999999999999985 4568999
Q ss_pred EcccCCCCHHhHhC
Q 041300 703 YEFLERGSLAAILS 716 (716)
Q Consensus 703 ~Ey~~~GsL~~~l~ 716 (716)
|||+++|+|.++++
T Consensus 86 ~e~~~~~~L~~~l~ 99 (279)
T 1qpc_A 86 TEYMENGSLVDFLK 99 (279)
T ss_dssp EECCTTCBHHHHTT
T ss_pred EecCCCCCHHHHHh
Confidence 99999999999873
No 246
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.11 E-value=7.3e-11 Score=118.85 Aligned_cols=91 Identities=26% Similarity=0.374 Sum_probs=77.3
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||.||+|... +++.||||++...... .....+.+.+|++++++++||||+++++++..++..++|
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIR-SLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEecccccc-chhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 56888999999999999999764 6899999998652111 111345789999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 90 ~e~~~~~~L~~~l 102 (276)
T 2h6d_A 90 MEYVSGGELFDYI 102 (276)
T ss_dssp EECCCSCBHHHHH
T ss_pred EeccCCCcHHHHH
Confidence 9999999999876
No 247
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=99.11 E-value=5.6e-11 Score=122.09 Aligned_cols=90 Identities=26% Similarity=0.466 Sum_probs=77.3
Q ss_pred hcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEe
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSH 695 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~ 695 (716)
...|...+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|++++.++ +|||||++++++..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~ 98 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA---HLTEREALMSELKVLSYLGNHMNIVNLLGACTI 98 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch---hHHHHHHHHHHHHHHhhcccCCCeeeEEEEEec
Confidence 45788899999999999999974 346789999997532 112456799999999999 99999999999999
Q ss_pred CCeeeEEEcccCCCCHHhHh
Q 041300 696 AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 696 ~~~~~lv~Ey~~~GsL~~~l 715 (716)
++..++||||+++|+|.+++
T Consensus 99 ~~~~~lv~e~~~~~~L~~~l 118 (313)
T 1t46_A 99 GGPTLVITEYCCYGDLLNFL 118 (313)
T ss_dssp SSSCEEEEECCTTEEHHHHH
T ss_pred CCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999886
No 248
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=99.11 E-value=5.3e-11 Score=120.12 Aligned_cols=92 Identities=26% Similarity=0.457 Sum_probs=76.9
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.++|...+.||+|+||.||+|... ++..||||++...... .......+.+|++++++++||||+++++++.+.+..++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 86 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLE-KAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 86 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH-HHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccc-hhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence 357888999999999999999654 5789999998652211 11124578999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+++|+|.+++
T Consensus 87 v~e~~~~~~l~~~l 100 (279)
T 3fdn_A 87 ILEYAPLGTVYREL 100 (279)
T ss_dssp EECCCTTEEHHHHH
T ss_pred EEecCCCCcHHHHH
Confidence 99999999998875
No 249
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=99.11 E-value=1.2e-10 Score=117.72 Aligned_cols=91 Identities=20% Similarity=0.346 Sum_probs=77.6
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.++|...+.||+|+||.||+|.. .+++.||||++...... ....+.+.+|++++++++||||+++++++..++..++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 82 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS--ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL 82 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCC--HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEE
Confidence 35788899999999999999965 46889999999753321 1234678999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+++|+|.+++
T Consensus 83 v~e~~~~~~l~~~~ 96 (284)
T 3kk8_A 83 VFDLVTGGELFEDI 96 (284)
T ss_dssp EECCCCSCBHHHHH
T ss_pred EEecCCCCCHHHHH
Confidence 99999999998765
No 250
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=99.11 E-value=1.4e-10 Score=119.82 Aligned_cols=80 Identities=28% Similarity=0.351 Sum_probs=70.9
Q ss_pred cccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeeeEEEccc
Q 041300 629 EYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSFLVYEFL 706 (716)
Q Consensus 629 ~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~lv~Ey~ 706 (716)
.+.||+|+||.||+|... +++.||||++... ....+.+|++++..++ |||||++++++.+++..|+|||||
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-------~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~ 88 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-------MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELL 88 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-------GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh-------hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEcc
Confidence 478999999999999754 6899999998652 3456889999999997 999999999999999999999999
Q ss_pred CCCCHHhHh
Q 041300 707 ERGSLAAIL 715 (716)
Q Consensus 707 ~~GsL~~~l 715 (716)
++|+|.+++
T Consensus 89 ~~~~L~~~l 97 (325)
T 3kn6_A 89 NGGELFERI 97 (325)
T ss_dssp CSCBHHHHH
T ss_pred CCCcHHHHH
Confidence 999999876
No 251
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.11 E-value=7.2e-11 Score=124.93 Aligned_cols=90 Identities=26% Similarity=0.456 Sum_probs=76.3
Q ss_pred hcCCcccccccCCCceEEEEEEcC--------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP--------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC 693 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~--------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~ 693 (716)
.+.|...+.||+|+||.||+|+.. .+..||||++.... .....+++.+|+++++++ +|||||++++++
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~ 144 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA---TEKDLSDLISEMEMMKMIGKHKNIINLLGAC 144 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc---CHHHHHHHHHHHHHHHHhcCCchhhhheeee
Confidence 356888899999999999999741 23579999997632 122456799999999999 999999999999
Q ss_pred EeCCeeeEEEcccCCCCHHhHh
Q 041300 694 SHAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 694 ~~~~~~~lv~Ey~~~GsL~~~l 715 (716)
..++..++||||+++|+|.+++
T Consensus 145 ~~~~~~~lv~e~~~~g~L~~~l 166 (382)
T 3tt0_A 145 TQDGPLYVIVEYASKGNLREYL 166 (382)
T ss_dssp CSSSSCEEEEECCTTCBHHHHH
T ss_pred ccCCceEEEEEecCCCcHHHHH
Confidence 9999999999999999999986
No 252
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=99.11 E-value=1.2e-10 Score=120.78 Aligned_cols=92 Identities=22% Similarity=0.359 Sum_probs=78.5
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
...|...+.||+|+||.||++... +++.||+|++........ ...+.+.+|++++++++|||||++++++.+.+..|+
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 118 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKP-HQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV 118 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSH-HHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCH-HHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence 356888999999999999999754 578999999875432222 245679999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||++|+|.+++
T Consensus 119 v~e~~~~~~L~~~~ 132 (335)
T 2owb_A 119 VLELCRRRSLLELH 132 (335)
T ss_dssp EECCCTTCBHHHHH
T ss_pred EEecCCCCCHHHHH
Confidence 99999999998875
No 253
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=99.11 E-value=4e-11 Score=124.10 Aligned_cols=90 Identities=21% Similarity=0.309 Sum_probs=75.2
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||+||+|.. .+++.||||++........ .....+.+|+++++.++|||||++++++..++..++|
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKS-DMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHT-TCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccch-hHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 5788899999999999999974 5789999999864211111 1235689999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+ +|+|.+++
T Consensus 88 ~E~~-~g~l~~~l 99 (336)
T 3h4j_B 88 IEYA-GGELFDYI 99 (336)
T ss_dssp ECCC-CEEHHHHH
T ss_pred EECC-CCcHHHHH
Confidence 9999 78998875
No 254
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.10 E-value=1e-10 Score=128.09 Aligned_cols=91 Identities=27% Similarity=0.435 Sum_probs=78.5
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
..|...++||+|+||.||+|... +++.||||++........ .....+.+|++++++++|||||++++++.+.+..++|
T Consensus 26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQK-TDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBS-SCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccc-hHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 45888999999999999999754 689999999975433222 2457799999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.+++
T Consensus 105 ~e~~~~~~L~~~~ 117 (484)
T 3nyv_A 105 GEVYTGGELFDEI 117 (484)
T ss_dssp ECCCCSCBHHHHH
T ss_pred EecCCCCCHHHHH
Confidence 9999999998875
No 255
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=99.10 E-value=1.2e-10 Score=122.25 Aligned_cols=89 Identities=31% Similarity=0.465 Sum_probs=77.9
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||.||++... ++..||+|++.... .....+.+.+|++++.+++|||||++++++..++..++|
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 109 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC 109 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC---CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc---CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEE
Confidence 46888999999999999999754 68899999997632 122456799999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.+++
T Consensus 110 ~e~~~~~~L~~~l 122 (360)
T 3eqc_A 110 MEHMDGGSLDQVL 122 (360)
T ss_dssp ECCCTTCBHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 9999999999876
No 256
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.10 E-value=1.3e-10 Score=127.69 Aligned_cols=93 Identities=23% Similarity=0.290 Sum_probs=74.8
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccc---------hhhHHHHHHHHHHHhcCCCCCccccceE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQ---------IADQKEFLTEVQALTEIRHRNIVKFYGF 692 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~---------~~~~~~~~~ei~~l~~l~H~niv~l~g~ 692 (716)
...|...++||+|+||+||+|... ++..||||++........ ....+++.+|++++++++|||||+++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 457889999999999999999754 578999999975432110 0134678999999999999999999999
Q ss_pred EEeCCeeeEEEcccCCCCHHhHh
Q 041300 693 CSHAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 693 ~~~~~~~~lv~Ey~~~GsL~~~l 715 (716)
+.+++..++|||||++|+|.+++
T Consensus 115 ~~~~~~~~lv~e~~~gg~L~~~l 137 (504)
T 3q5i_A 115 FEDKKYFYLVTEFYEGGELFEQI 137 (504)
T ss_dssp EECSSEEEEEEECCTTCBHHHHH
T ss_pred EEcCCEEEEEEecCCCCcHHHHH
Confidence 99999999999999999998875
No 257
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=99.10 E-value=1.2e-10 Score=119.44 Aligned_cols=92 Identities=21% Similarity=0.350 Sum_probs=78.5
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.++|...+.||+|+||.||+|... +++.||||++........ ...+.+.+|++++.+++||||+++++++..++..|+
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l 111 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDP-VFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV 111 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCH-HHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence 367999999999999999999754 688999999975322221 234679999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+++|+|.+++
T Consensus 112 v~e~~~~~~L~~~l 125 (309)
T 2h34_A 112 DMRLINGVDLAAML 125 (309)
T ss_dssp EEECCCCEEHHHHH
T ss_pred EEEecCCCCHHHHH
Confidence 99999999999876
No 258
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=99.10 E-value=6.2e-11 Score=119.50 Aligned_cols=92 Identities=25% Similarity=0.444 Sum_probs=77.5
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.++|...+.||+|+||.||+|.. .+++.||||++....... ....+.+.+|++++.+++||||+++++++.+.+..++
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 88 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYK-AGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL 88 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHH-TTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhh-hhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence 35688899999999999999975 578999999986421111 1124678999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+++|+|.+++
T Consensus 89 v~e~~~~~~L~~~l 102 (278)
T 3cok_A 89 VLEMCHNGEMNRYL 102 (278)
T ss_dssp EEECCTTEEHHHHH
T ss_pred EEecCCCCcHHHHH
Confidence 99999999999876
No 259
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=99.10 E-value=8.2e-11 Score=119.34 Aligned_cols=88 Identities=23% Similarity=0.440 Sum_probs=75.3
Q ss_pred cCCcccccccCCCceEEEEEEcCC-C-------CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPS-G-------EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH 695 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~-~-------~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~ 695 (716)
++|...+.||+|+||.||+|.... + ..||+|++.... ....+.|.+|++++++++|||||++++++..
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 83 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAH----RNYSESFFEAASMMSKLSHKHLVLNYGVCVC 83 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGG----GGGHHHHHHHHHHHHTSCCTTBCCEEEEECC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccccc----HHHHHHHHHHHHHHHhCCCCCEeEEEEEEEe
Confidence 468888999999999999996432 3 479999986531 1245779999999999999999999999999
Q ss_pred CCeeeEEEcccCCCCHHhHh
Q 041300 696 AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 696 ~~~~~lv~Ey~~~GsL~~~l 715 (716)
++..++||||+++|+|.+++
T Consensus 84 ~~~~~lv~e~~~~~~L~~~l 103 (289)
T 4fvq_A 84 GDENILVQEFVKFGSLDTYL 103 (289)
T ss_dssp TTCCEEEEECCTTCBHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 99999999999999999886
No 260
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.10 E-value=1.7e-10 Score=118.73 Aligned_cols=88 Identities=28% Similarity=0.427 Sum_probs=74.2
Q ss_pred CCcccccccCCCceEEEEEEcC-----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--C
Q 041300 625 DFDAEYCIGNGGHGSVYRAELP-----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--Q 697 (716)
Q Consensus 625 ~~~~~~~ig~g~~g~v~~~~~~-----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--~ 697 (716)
.|...+.||+|+||+||++.+. +++.||||++.... .....+.|.+|++++++++|||||++++++.+. .
T Consensus 32 ~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (318)
T 3lxp_A 32 YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA---GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAA 108 (318)
T ss_dssp GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTT
T ss_pred HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc---ChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCc
Confidence 3578889999999999998653 57889999997632 122456799999999999999999999999884 5
Q ss_pred eeeEEEcccCCCCHHhHh
Q 041300 698 HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 ~~~lv~Ey~~~GsL~~~l 715 (716)
..++||||+++|+|.+++
T Consensus 109 ~~~lv~e~~~~~~L~~~l 126 (318)
T 3lxp_A 109 SLQLVMEYVPLGSLRDYL 126 (318)
T ss_dssp EEEEEECCCTTCBHHHHG
T ss_pred eEEEEEecccCCcHHHHH
Confidence 679999999999999886
No 261
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=99.10 E-value=1.3e-10 Score=117.12 Aligned_cols=88 Identities=25% Similarity=0.345 Sum_probs=76.6
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
+.|...+.||+|+||.||+|... ++..||+|++...... ..+.+.+|++++.+++||||+++++++.+++..++|
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (277)
T 3f3z_A 9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVE----DVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLV 84 (277)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCS----CHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccc----hHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEE
Confidence 46888999999999999999754 5779999998753221 346799999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 85 ~e~~~~~~L~~~~ 97 (277)
T 3f3z_A 85 MELCTGGELFERV 97 (277)
T ss_dssp EECCCSCBHHHHH
T ss_pred EeccCCCcHHHHH
Confidence 9999999998875
No 262
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.10 E-value=9.8e-11 Score=128.40 Aligned_cols=90 Identities=23% Similarity=0.351 Sum_probs=72.9
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
..|...+.||+|+||.||+|... ++..||||++........ ....+.+|++++++++|||||++++++.+.+..|+|
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 114 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTS--SNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV 114 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----C--TTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCch--HHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 45888999999999999999754 688999999976432211 346789999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.+++
T Consensus 115 ~e~~~~g~L~~~~ 127 (494)
T 3lij_A 115 MECYKGGELFDEI 127 (494)
T ss_dssp EECCCSCBHHHHH
T ss_pred EecCCCCcHHHHH
Confidence 9999999998765
No 263
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=99.09 E-value=1.1e-10 Score=120.11 Aligned_cols=89 Identities=25% Similarity=0.443 Sum_probs=62.6
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
..+|...+.||+|+||.||+|... +++.||||++....... ..+.+.+|++++++++|||||++++++..++..++
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l 80 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEG---TPSTAIREISLMKELKHENIVRLYDVIHTENKLTL 80 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTC---SCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccc---cHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEE
Confidence 356888899999999999999754 58999999997532111 23568899999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||+ |+|.+++
T Consensus 81 v~e~~~-~~L~~~l 93 (317)
T 2pmi_A 81 VFEFMD-NDLKKYM 93 (317)
T ss_dssp EEECCC-CBHHHHH
T ss_pred EEEecC-CCHHHHH
Confidence 999999 5898875
No 264
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.09 E-value=1.1e-10 Score=120.87 Aligned_cols=90 Identities=28% Similarity=0.497 Sum_probs=74.5
Q ss_pred hcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA 696 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~ 696 (716)
..+|...+.||+|+||.||+|.. .++..||||++.... ......+|.+|+.++++++||||+++++++...
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 105 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC---SEQDELDFLMEALIISKFNHQNIVRCIGVSLQS 105 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecccc---chhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCC
Confidence 45788999999999999999974 246789999996432 122456799999999999999999999999998
Q ss_pred CeeeEEEcccCCCCHHhHh
Q 041300 697 QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 ~~~~lv~Ey~~~GsL~~~l 715 (716)
+..|+||||+++|+|.+++
T Consensus 106 ~~~~lv~e~~~~~~L~~~l 124 (327)
T 2yfx_A 106 LPRFILMELMAGGDLKSFL 124 (327)
T ss_dssp SSCEEEEECCTTEEHHHHH
T ss_pred CCcEEEEecCCCCcHHHHH
Confidence 8999999999999999886
No 265
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.09 E-value=1.5e-08 Score=106.87 Aligned_cols=82 Identities=4% Similarity=0.009 Sum_probs=43.8
Q ss_pred CCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcccccCccCCCccccCCCCCc
Q 041300 72 FSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQFNELDGSIPPEVCQLSSIE 151 (716)
Q Consensus 72 f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (716)
|....+|+.+.+.. .++.+...+|.++.+|+.++|..+ ++.+...+|.+. +|+.+.+..+ +..+...+|.. .+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 44445666666653 355555566666677777766543 444445556655 4555555433 33333334443 2566
Q ss_pred eeecccc
Q 041300 152 ELFLYSN 158 (716)
Q Consensus 152 ~L~L~~N 158 (716)
.+.+..+
T Consensus 117 ~i~lp~~ 123 (379)
T 4h09_A 117 DFEFPGA 123 (379)
T ss_dssp EEECCTT
T ss_pred cccCCCc
Confidence 6666543
No 266
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=99.09 E-value=1.5e-10 Score=118.25 Aligned_cols=89 Identities=30% Similarity=0.451 Sum_probs=73.0
Q ss_pred cCCcccccccCCCceEEEEEEc-----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC--
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-- 696 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-- 696 (716)
..|...+.||+|+||.||+|.+ .+++.||||++...... ...+.+.+|++++.+++||||+++++++...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 97 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGG---NHIADLKKEIEILRNLYHENIVKYKGICTEDGG 97 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC--------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccc---hhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCC
Confidence 3578889999999999999984 35789999999753211 1346799999999999999999999999876
Q ss_pred CeeeEEEcccCCCCHHhHh
Q 041300 697 QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 ~~~~lv~Ey~~~GsL~~~l 715 (716)
+..++||||+++|+|.+++
T Consensus 98 ~~~~lv~e~~~~~~L~~~l 116 (302)
T 4e5w_A 98 NGIKLIMEFLPSGSLKEYL 116 (302)
T ss_dssp CCEEEEEECCTTCBHHHHH
T ss_pred ceEEEEEEeCCCCcHHHHH
Confidence 5689999999999999886
No 267
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=99.09 E-value=1.3e-10 Score=121.05 Aligned_cols=90 Identities=31% Similarity=0.464 Sum_probs=75.0
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
..|...+.||+|+||.||+|.. .+++.||||++........ ...++|.+|++++++++|||||++++++..++..++|
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 132 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSN-EKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV 132 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHH-HHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccch-HHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence 3478888999999999999974 5789999999975432222 2346799999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||+ |+|.+++
T Consensus 133 ~e~~~-g~l~~~l 144 (348)
T 1u5q_A 133 MEYCL-GSASDLL 144 (348)
T ss_dssp EECCS-EEHHHHH
T ss_pred EecCC-CCHHHHH
Confidence 99998 6777664
No 268
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.09 E-value=7.8e-11 Score=120.66 Aligned_cols=83 Identities=36% Similarity=0.663 Sum_probs=72.1
Q ss_pred cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY 703 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~ 703 (716)
.+|...+.||+|+||.||+|+. .++.||||++... ...+.|.+|++++++++|||||+++|++. +..++||
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~ 78 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE------SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVM 78 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST------THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEE
T ss_pred hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh------hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEE
Confidence 4678889999999999999987 4788999998642 14567999999999999999999999886 4589999
Q ss_pred cccCCCCHHhHh
Q 041300 704 EFLERGSLAAIL 715 (716)
Q Consensus 704 Ey~~~GsL~~~l 715 (716)
||+++|+|.+++
T Consensus 79 e~~~~~~L~~~l 90 (307)
T 2eva_A 79 EYAEGGSLYNVL 90 (307)
T ss_dssp ECCTTCBHHHHH
T ss_pred EcCCCCCHHHHH
Confidence 999999999886
No 269
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=99.09 E-value=8.1e-11 Score=129.04 Aligned_cols=91 Identities=20% Similarity=0.298 Sum_probs=77.1
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
.+|...++||+|+||+||+++.. +|+.||||++.+...... ...+.+.+|++++.+++|||||++++++.+.+..|+|
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~-~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKR-KGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhh-HHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 56888889999999999999764 689999999965321111 1345789999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.+++
T Consensus 264 mE~~~gg~L~~~l 276 (543)
T 3c4z_A 264 MTIMNGGDIRYHI 276 (543)
T ss_dssp ECCCTTCBHHHHH
T ss_pred EEeccCCCHHHHH
Confidence 9999999998876
No 270
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=99.09 E-value=7.1e-11 Score=124.08 Aligned_cols=91 Identities=23% Similarity=0.331 Sum_probs=68.5
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHH-HhcCCCCCccccceEEEeCCeeeE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQA-LTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~-l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.+|...++||+|+||+||+++.. +++.||||++.+....... ....+.+|..+ ++.++|||||++++++.+.+..|+
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~-~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKK-EEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC--------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhH-HHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 56889999999999999999754 5889999999764322221 33456777776 577899999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||++|+|.+++
T Consensus 117 v~E~~~gg~L~~~l 130 (373)
T 2r5t_A 117 VLDYINGGELFYHL 130 (373)
T ss_dssp EEECCCSCBHHHHH
T ss_pred EEeCCCCCcHHHHH
Confidence 99999999998876
No 271
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=99.09 E-value=8.1e-11 Score=122.71 Aligned_cols=92 Identities=24% Similarity=0.456 Sum_probs=76.3
Q ss_pred HhhcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEE
Q 041300 621 RETNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFC 693 (716)
Q Consensus 621 ~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~ 693 (716)
....+|...+.||+|+||.||+|.. .++..||||++..... ....+.+.+|++++.++ +||||+++++++
T Consensus 42 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 118 (344)
T 1rjb_A 42 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD---SSEREALMSELKMMTQLGSHENIVNLLGAC 118 (344)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccC---HHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence 3456788999999999999999974 2356899999975321 11346799999999999 899999999999
Q ss_pred EeCCeeeEEEcccCCCCHHhHh
Q 041300 694 SHAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 694 ~~~~~~~lv~Ey~~~GsL~~~l 715 (716)
...+..++||||+++|+|.+++
T Consensus 119 ~~~~~~~lv~e~~~~g~L~~~l 140 (344)
T 1rjb_A 119 TLSGPIYLIFEYCCYGDLLNYL 140 (344)
T ss_dssp CSSSSCEEEEECCTTCBHHHHH
T ss_pred eeCCccEEEEecCCCCcHHHHH
Confidence 9999999999999999999886
No 272
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.09 E-value=1.6e-10 Score=116.47 Aligned_cols=91 Identities=26% Similarity=0.525 Sum_probs=76.6
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe--CCee
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--AQHS 699 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~--~~~~ 699 (716)
.++|...+.||+|+||.||++... +++.||||++...... ....+.+.+|++++++++||||+++++++.. .+..
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 82 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT--EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTL 82 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCC--HHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceE
Confidence 357888999999999999999754 6899999999754321 1245679999999999999999999998865 5678
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++||||+++|+|.+++
T Consensus 83 ~lv~e~~~~~~L~~~l 98 (279)
T 2w5a_A 83 YIVMEYCEGGDLASVI 98 (279)
T ss_dssp EEEEECCTTEEHHHHH
T ss_pred EEEEeCCCCCCHHHHH
Confidence 9999999999999886
No 273
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=99.08 E-value=2.6e-10 Score=117.24 Aligned_cols=87 Identities=23% Similarity=0.357 Sum_probs=73.9
Q ss_pred CCcc-cccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300 625 DFDA-EYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 625 ~~~~-~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l 701 (716)
.|.. .++||+|+||+||+|.. .+++.||||++..... .....+.+|++++.++ +|||||++++++.+++..++
T Consensus 13 ~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~l 88 (316)
T 2ac3_A 13 VYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPG----HIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYL 88 (316)
T ss_dssp SCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSS----CCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred eEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcc----hhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence 4555 47899999999999974 4689999999975321 1346789999999985 79999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||++|+|.+++
T Consensus 89 v~e~~~~~~L~~~l 102 (316)
T 2ac3_A 89 VFEKMRGGSILSHI 102 (316)
T ss_dssp EEECCTTCBHHHHH
T ss_pred EEEcCCCCcHHHHH
Confidence 99999999999876
No 274
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=99.08 E-value=1e-10 Score=118.63 Aligned_cols=89 Identities=30% Similarity=0.482 Sum_probs=75.3
Q ss_pred cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY 703 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~ 703 (716)
++|...+.||+|+||.||+|+..+++.||||++....... ...+.+.+|++++++++|||||++++++..++..++||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 79 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDE--GIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVF 79 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGG--CCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEE
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEecccccc--ccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEE
Confidence 3678889999999999999987779999999997532211 12367889999999999999999999999999999999
Q ss_pred cccCCCCHHhHh
Q 041300 704 EFLERGSLAAIL 715 (716)
Q Consensus 704 Ey~~~GsL~~~l 715 (716)
||+++ +|.+++
T Consensus 80 e~~~~-~l~~~~ 90 (288)
T 1ob3_A 80 EHLDQ-DLKKLL 90 (288)
T ss_dssp ECCSE-EHHHHH
T ss_pred EecCC-CHHHHH
Confidence 99986 887765
No 275
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=99.08 E-value=9.8e-11 Score=119.39 Aligned_cols=93 Identities=22% Similarity=0.333 Sum_probs=71.3
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccc----------------------hhhHHHHHHHHHHHh
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQ----------------------IADQKEFLTEVQALT 679 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~----------------------~~~~~~~~~ei~~l~ 679 (716)
.++|...+.||+|+||.||+|.. .+++.||||++........ ....+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 35788999999999999999964 4688999999975321110 001246899999999
Q ss_pred cCCCCCccccceEEEe--CCeeeEEEcccCCCCHHhHh
Q 041300 680 EIRHRNIVKFYGFCSH--AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 680 ~l~H~niv~l~g~~~~--~~~~~lv~Ey~~~GsL~~~l 715 (716)
+++|||||++++++.+ .+..++||||+++|+|.+++
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~ 129 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVP 129 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSS
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHh
Confidence 9999999999999987 56789999999999987653
No 276
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=99.08 E-value=1.5e-10 Score=119.44 Aligned_cols=92 Identities=29% Similarity=0.503 Sum_probs=69.0
Q ss_pred hhcCCcccccccCCCceEEEEEEcCC-C---CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAELPS-G---EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ 697 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~~~~-~---~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~ 697 (716)
...+|...+.||+|+||.||+|.... + ..||||++....... ...++|.+|++++++++|||||++++++....
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 98 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIAS--SDIEEFLREAACMKEFDHPHVAKLVGVSLRSR 98 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------C--HHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCH--HHHHHHHHHHHHHHHCCCCceehhhceeeccc
Confidence 34579999999999999999997653 2 279999997532222 24578999999999999999999999998776
Q ss_pred ee------eEEEcccCCCCHHhHh
Q 041300 698 HS------FLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 ~~------~lv~Ey~~~GsL~~~l 715 (716)
.. ++||||+++|+|.+++
T Consensus 99 ~~~~~~~~~~v~e~~~~~~L~~~l 122 (323)
T 3qup_A 99 AKGRLPIPMVILPFMKHGDLHAFL 122 (323)
T ss_dssp ------CEEEEEECCTTCBHHHHH
T ss_pred cccCCCccEEEEEeccCCcHHHHH
Confidence 55 9999999999999876
No 277
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=99.08 E-value=1.7e-10 Score=118.29 Aligned_cols=90 Identities=27% Similarity=0.457 Sum_probs=76.7
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||.||+|... +++.||||++.... ......+.+.+|++++++++|||||++++++...+..++|
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 80 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESE--DDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLV 80 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCC--C-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccc--cchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEE
Confidence 46888899999999999999754 58999999986532 2222356788999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.+++
T Consensus 81 ~e~~~~~~l~~~~ 93 (311)
T 4agu_A 81 FEYCDHTVLHELD 93 (311)
T ss_dssp EECCSEEHHHHHH
T ss_pred EEeCCCchHHHHH
Confidence 9999999988764
No 278
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.08 E-value=1.2e-10 Score=124.60 Aligned_cols=92 Identities=22% Similarity=0.306 Sum_probs=73.7
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccc----hhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQ----IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ 697 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~----~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~ 697 (716)
.+.|...+.||+|+||.||+|.. .+++.||||++........ ......+.+|++++++++|||||++++++. .+
T Consensus 134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-~~ 212 (419)
T 3i6u_A 134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-AE 212 (419)
T ss_dssp HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-SS
T ss_pred hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-cC
Confidence 46799999999999999999964 4688999999875321111 111235889999999999999999999985 55
Q ss_pred eeeEEEcccCCCCHHhHh
Q 041300 698 HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 ~~~lv~Ey~~~GsL~~~l 715 (716)
..|+|||||++|+|.+++
T Consensus 213 ~~~lv~e~~~~g~L~~~l 230 (419)
T 3i6u_A 213 DYYIVLELMEGGELFDKV 230 (419)
T ss_dssp EEEEEEECCTTCBGGGGT
T ss_pred ceEEEEEcCCCCcHHHHH
Confidence 689999999999998876
No 279
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=99.08 E-value=1.4e-10 Score=116.72 Aligned_cols=89 Identities=27% Similarity=0.377 Sum_probs=77.2
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||.||+|... +++.||||++...... ...+.+.+|+++++.++||||+++++++.+++..++|
T Consensus 7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 83 (276)
T 2yex_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV---DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF 83 (276)
T ss_dssp HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCT---THHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccch---hhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEE
Confidence 46888899999999999999754 6899999998753221 1346799999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 84 ~e~~~~~~L~~~l 96 (276)
T 2yex_A 84 LEYCSGGELFDRI 96 (276)
T ss_dssp EECCTTEEGGGGS
T ss_pred EEecCCCcHHHHH
Confidence 9999999999876
No 280
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=99.07 E-value=8.1e-11 Score=122.69 Aligned_cols=92 Identities=20% Similarity=0.311 Sum_probs=77.2
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~ 700 (716)
..+|...++||+|+||+||+|+.. +++.||||++.+...... ...+.+.+|+.++..+ +||+|+++++++.+.+..|
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~-~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQD-DDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHT-TCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcc-hHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 467999999999999999999765 478999999975321111 1345688999999988 8999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++|+|.+++
T Consensus 98 lv~E~~~gg~L~~~l 112 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHI 112 (353)
T ss_dssp EEEECCCSCBHHHHH
T ss_pred EEEeCCCCCcHHHHH
Confidence 999999999999876
No 281
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=99.07 E-value=1.3e-10 Score=122.31 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=74.7
Q ss_pred hhcCCcccccccCCCceEEEEEE------cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC---CCCccccceE
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAE------LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR---HRNIVKFYGF 692 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~------~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~---H~niv~l~g~ 692 (716)
....|...++||+|+||.||+|. ..+++.||||++... ...++.+|++++.+++ |+|+++++++
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-------~~~~~~~e~~~~~~l~~~~~~~iv~~~~~ 135 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-------NPWEFYIGTQLMERLKPSMQHMFMKFYSA 135 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-------CHHHHHHHHHHHHHSCGGGGGGBCCEEEE
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-------ChhHHHHHHHHHHHhhhhhhhhhhhhhee
Confidence 34678889999999999999993 446889999998752 3456888888888887 9999999999
Q ss_pred EEeCCeeeEEEcccCCCCHHhHh
Q 041300 693 CSHAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 693 ~~~~~~~~lv~Ey~~~GsL~~~l 715 (716)
+..++..++|||||++|+|.+++
T Consensus 136 ~~~~~~~~lv~e~~~~g~L~~~l 158 (365)
T 3e7e_A 136 HLFQNGSVLVGELYSYGTLLNAI 158 (365)
T ss_dssp EECSSCEEEEECCCCSCBHHHHH
T ss_pred eecCCCcEEEEeccCCCcHHHHH
Confidence 99999999999999999999987
No 282
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=99.07 E-value=5.9e-11 Score=123.34 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=72.7
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~ 700 (716)
.++|...+.||+|+||+||++... +++.||||++.+.. ..+.+|++++.++ +|||||++++++.+++..|
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~--------~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~ 92 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK--------RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVY 92 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT--------CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEE
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc--------CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEE
Confidence 356888999999999999999654 68899999997632 1245688888887 7999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++|+|.+++
T Consensus 93 lv~E~~~gg~L~~~i 107 (342)
T 2qr7_A 93 VVTELMKGGELLDKI 107 (342)
T ss_dssp EEECCCCSCBHHHHH
T ss_pred EEEeCCCCCcHHHHH
Confidence 999999999999876
No 283
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=99.07 E-value=2.1e-10 Score=117.00 Aligned_cols=86 Identities=34% Similarity=0.548 Sum_probs=71.1
Q ss_pred hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhc--CCCCCccccceEEEeC----
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE--IRHRNIVKFYGFCSHA---- 696 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~--l~H~niv~l~g~~~~~---- 696 (716)
.++|...+.||+|+||+||+|+. +++.||||++... ....+.+|.+++.. ++|||||++++++...
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~ 78 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR-------DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSS 78 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG-------GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc-------cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCC
Confidence 35788999999999999999987 6889999998652 33556677777666 7999999999997653
Q ss_pred CeeeEEEcccCCCCHHhHhC
Q 041300 697 QHSFLVYEFLERGSLAAILS 716 (716)
Q Consensus 697 ~~~~lv~Ey~~~GsL~~~l~ 716 (716)
...++||||+++|+|.++++
T Consensus 79 ~~~~lv~e~~~~g~L~~~l~ 98 (301)
T 3q4u_A 79 TQLWLITHYHEMGSLYDYLQ 98 (301)
T ss_dssp EEEEEEECCCTTCBHHHHHT
T ss_pred ceeEEehhhccCCCHHHHHh
Confidence 45799999999999999873
No 284
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=99.07 E-value=2.4e-10 Score=116.71 Aligned_cols=89 Identities=24% Similarity=0.394 Sum_probs=77.4
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
..|...+.||+|+||.||+|.. .+++.||||++....... ..+.+.+|+.++++++||||+++++++...+..++|
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 98 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAED---EIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWII 98 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCST---THHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHH---HHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEE
Confidence 4588889999999999999964 468899999997543221 357799999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 99 ~e~~~~~~L~~~~ 111 (303)
T 3a7i_A 99 MEYLGGGSALDLL 111 (303)
T ss_dssp EECCTTEEHHHHH
T ss_pred EEeCCCCcHHHHH
Confidence 9999999999876
No 285
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=99.07 E-value=9.3e-11 Score=118.62 Aligned_cols=91 Identities=27% Similarity=0.480 Sum_probs=76.5
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||.||+|... ++..||||++........ ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKE-GVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHT-TCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchH-HHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 56888999999999999999754 578899999864211111 1246789999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 93 ~e~~~~~~L~~~l 105 (284)
T 2vgo_A 93 LEFAPRGELYKEL 105 (284)
T ss_dssp ECCCTTEEHHHHH
T ss_pred EEeCCCCcHHHHH
Confidence 9999999998876
No 286
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.07 E-value=4.9e-11 Score=129.07 Aligned_cols=92 Identities=22% Similarity=0.275 Sum_probs=69.5
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.++|...++||+|+||.||+|.. .+++.||||++........ .....+.+|+.++++++|||||++++++...+..++
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l 225 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAK-DEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCF 225 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC--------------CCCCCSCTTSCCEEEEEEETTEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhh-HHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEE
Confidence 45788999999999999999964 4689999999975321111 133568899999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||++|+|.+++
T Consensus 226 v~e~~~~~~L~~~l 239 (446)
T 4ejn_A 226 VMEYANGGELFFHL 239 (446)
T ss_dssp EECCCSSCBHHHHH
T ss_pred EEeeCCCCcHHHHH
Confidence 99999999998876
No 287
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.07 E-value=1.1e-10 Score=127.69 Aligned_cols=90 Identities=22% Similarity=0.391 Sum_probs=77.0
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
..|...++||+|+||+||+|... +++.||||++....... .....+.+|++++++++|||||++++++.+.+..|+|
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN--KDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBC--SCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccc--hHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 45888999999999999999754 68999999986432111 1346799999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||++|+|.+++
T Consensus 100 ~e~~~~~~L~~~~ 112 (486)
T 3mwu_A 100 GELYTGGELFDEI 112 (486)
T ss_dssp ECCCCSCBHHHHH
T ss_pred EEcCCCCcHHHHH
Confidence 9999999998765
No 288
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=99.07 E-value=1.9e-10 Score=117.55 Aligned_cols=88 Identities=23% Similarity=0.388 Sum_probs=74.8
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
..|...+.||+|+||.||+++.. +++.||||++..... ...+.+.+|++++.+++||||+++++++.+.+..++|
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (304)
T 2jam_A 9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA----FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLV 84 (304)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC----------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc----cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEE
Confidence 46888999999999999999754 689999999975321 1335689999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 85 ~e~~~~~~L~~~l 97 (304)
T 2jam_A 85 MQLVSGGELFDRI 97 (304)
T ss_dssp ECCCCSCBHHHHH
T ss_pred EEcCCCccHHHHH
Confidence 9999999998875
No 289
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=99.07 E-value=3.4e-10 Score=118.90 Aligned_cols=98 Identities=20% Similarity=0.285 Sum_probs=80.0
Q ss_pred HHHHhhcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccch----hhHHHHHHHHHHHhcC-CCCCccccce
Q 041300 618 EIVRETNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQI----ADQKEFLTEVQALTEI-RHRNIVKFYG 691 (716)
Q Consensus 618 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~----~~~~~~~~ei~~l~~l-~H~niv~l~g 691 (716)
.......+|...++||+|+||.||+|... +|+.||||++......... ...+.+.+|+.++.++ +||||+++++
T Consensus 88 ~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~ 167 (365)
T 2y7j_A 88 AAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLID 167 (365)
T ss_dssp HHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred hhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEE
Confidence 33344567899999999999999999764 6899999998754321111 1235688999999999 7999999999
Q ss_pred EEEeCCeeeEEEcccCCCCHHhHh
Q 041300 692 FCSHAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 692 ~~~~~~~~~lv~Ey~~~GsL~~~l 715 (716)
++...+..++|||||++|+|.+++
T Consensus 168 ~~~~~~~~~lv~e~~~g~~L~~~l 191 (365)
T 2y7j_A 168 SYESSSFMFLVFDLMRKGELFDYL 191 (365)
T ss_dssp EEEBSSEEEEEECCCTTCBHHHHH
T ss_pred EEeeCCEEEEEEEeCCCCcHHHHH
Confidence 999999999999999999999876
No 290
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.07 E-value=2.4e-10 Score=116.22 Aligned_cols=87 Identities=23% Similarity=0.347 Sum_probs=73.6
Q ss_pred CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEE
Q 041300 625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVY 703 (716)
Q Consensus 625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~ 703 (716)
.|....+||+|+||.||+|.. .+++.||||++.... . ...+.+.+|+.+++.++|||||++++++...+..++||
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 98 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERD---S-RYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFM 98 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCC---C----HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCc---h-HHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEE
Confidence 355556899999999999974 568899999987532 1 13467999999999999999999999999999999999
Q ss_pred cccCCCCHHhHh
Q 041300 704 EFLERGSLAAIL 715 (716)
Q Consensus 704 Ey~~~GsL~~~l 715 (716)
||+++|+|.+++
T Consensus 99 e~~~~~~L~~~l 110 (295)
T 2clq_A 99 EQVPGGSLSALL 110 (295)
T ss_dssp ECCSEEEHHHHH
T ss_pred EeCCCCCHHHHH
Confidence 999999999876
No 291
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=99.07 E-value=5e-11 Score=124.77 Aligned_cols=92 Identities=20% Similarity=0.309 Sum_probs=76.5
Q ss_pred cCCcccccccCCCceEEEEEEc----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCe
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQH 698 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~ 698 (716)
.+|...++||+|+||.||+++. .+++.||||+++...........+.+.+|++++.++ +||||+++++++...+.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 5788999999999999999975 368899999987532111111234578899999999 69999999999999999
Q ss_pred eeEEEcccCCCCHHhHh
Q 041300 699 SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 ~~lv~Ey~~~GsL~~~l 715 (716)
.++|||||++|+|.+++
T Consensus 134 ~~lv~e~~~~~~L~~~l 150 (355)
T 1vzo_A 134 LHLILDYINGGELFTHL 150 (355)
T ss_dssp EEEEECCCCSCBHHHHH
T ss_pred EEEEeecCCCCCHHHHH
Confidence 99999999999999886
No 292
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.07 E-value=3e-08 Score=104.60 Aligned_cols=310 Identities=9% Similarity=0.016 Sum_probs=182.3
Q ss_pred CEEEEEcCCCCCccccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEc
Q 041300 52 RVTNISLRNTGLSGTLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSF 131 (716)
Q Consensus 52 ~v~~l~l~~~~l~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 131 (716)
.++.+.+.. ++. .|.+.+|.++.+|+.++|..+ +..+...+|.++ +|+.+.+..+ +..+...+|... +|+.+.+
T Consensus 47 ~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~l 120 (379)
T 4h09_A 47 RISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEF 120 (379)
T ss_dssp GCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEEC
T ss_pred CCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccC
Confidence 466666653 343 677899999999999999754 776777889887 6888888754 554555677664 8999999
Q ss_pred ccccCccCCCccccCCCCCceeecccccccCCCCccccCCcCCcEEEeecccccccccccccCCCCCceeeCCCCCcccC
Q 041300 132 QFNELDGSIPPEVCQLSSIEELFLYSNHLNGSLPPFLGNLSNIVRLYINNNSLSGSILTNIGNLKFLFELDLSFLPLSVG 211 (716)
Q Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 211 (716)
..+- ..+....|... +|+.+.+..+ ++.+....|....+++...+..+............ .. .......+.
T Consensus 121 p~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~ 191 (379)
T 4h09_A 121 PGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY-NK-----NKTILESYP 191 (379)
T ss_dssp CTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE-ET-----TSSEEEECC
T ss_pred CCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceec-cc-----ccceecccc
Confidence 8653 33444455554 5666666543 45566777888888888877665432111000000 00 000011122
Q ss_pred CCCccCEEEeeCCcCcccCCCccccccccEEEccCCcCccccCccccCCCCccEEEecCCcccccCCcccccCCCCcEEE
Q 041300 212 NLTNLKSLGLMDNHLSGSIPPSFGNSMLTWLTLSGNHFTGYLPHNICRGGLLEAFIVSENHFQGTIPESLRNCTSLIRVR 291 (716)
Q Consensus 212 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 291 (716)
....+..+.+.... .......+.....++.+.+..+ +.......|.++..|+.+.
T Consensus 192 ~~~~~~~~~~~~~~------------------------~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~ 246 (379)
T 4h09_A 192 AAKTGTEFTIPSTV------------------------KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIA 246 (379)
T ss_dssp TTCCCSEEECCTTC------------------------CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccccce------------------------eEEeecccccccccceeeeccc-eeEEccccccCCccceEEE
Confidence 22233333322211 1112223333344444444332 2223444556666677766
Q ss_pred ccCCcCCCccchhhCCCCCCCEEEccCCccccccCCCCCCCCCCCEEEcccCcCcccCcccccCCCCCCEEEccCCcccc
Q 041300 292 LNGNNLTGNISEALGLYPNLTFIDLSRNNFYGEISSNWGKCPKLGTLNVSMNNITGGIPREIGNMSQLQALDLSLNHIVG 371 (716)
Q Consensus 292 l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 371 (716)
+..+ ++.....+|....+|+.+.+..+ +.......|..|.+|+.+.+.++.++.....+|.++.+|+.++|..+ ++.
T Consensus 247 lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~ 323 (379)
T 4h09_A 247 IPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT 323 (379)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred cCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE
Confidence 6544 55555566666777777777543 55455566777777777777777676666667777777777777644 554
Q ss_pred ccCcccCCCCCCcEEEccCCcccccCCcccCCCC
Q 041300 372 EIPKELGKLNSLTKLILRGNQLTGRLPTEIGSLI 405 (716)
Q Consensus 372 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 405 (716)
+...+|.++.+|+.+.+..+ ++.+-..+|.++.
T Consensus 324 I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 324 IQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp ECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred EHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 55567777777777777654 4444445565543
No 293
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.06 E-value=1.8e-10 Score=129.23 Aligned_cols=82 Identities=28% Similarity=0.425 Sum_probs=69.4
Q ss_pred cccCCCceEEEEEEcC---CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEcccC
Q 041300 631 CIGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFLE 707 (716)
Q Consensus 631 ~ig~g~~g~v~~~~~~---~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~~ 707 (716)
.||+|+||.||+|.+. ++..||||+++..... ...++|.+|+++|++++|||||+++|+|.. +..++|||||+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~---~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~ 418 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEK---ADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAG 418 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSS---TTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCCh---HHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCC
Confidence 7999999999999653 4567999999764211 245789999999999999999999999976 56899999999
Q ss_pred CCCHHhHhC
Q 041300 708 RGSLAAILS 716 (716)
Q Consensus 708 ~GsL~~~l~ 716 (716)
+|+|.++++
T Consensus 419 ~g~L~~~l~ 427 (613)
T 2ozo_A 419 GGPLHKFLV 427 (613)
T ss_dssp TCBHHHHHT
T ss_pred CCcHHHHHh
Confidence 999999873
No 294
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=99.06 E-value=2.7e-10 Score=115.42 Aligned_cols=90 Identities=33% Similarity=0.480 Sum_probs=73.6
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhh---HHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIAD---QKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS 699 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~---~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~ 699 (716)
.+|...+.||+|+||.||+|.. .+++.||||++........... .+.|.+|++++++++||||+++++++.+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 5688899999999999999975 4689999999975433222211 167999999999999999999999985544
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++||||+++|+|.+++
T Consensus 97 ~lv~e~~~~~~L~~~l 112 (287)
T 4f0f_A 97 RMVMEFVPCGDLYHRL 112 (287)
T ss_dssp EEEEECCTTCBHHHHH
T ss_pred eEEEEecCCCCHHHHH
Confidence 7999999999998765
No 295
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=99.06 E-value=2.3e-10 Score=115.15 Aligned_cols=90 Identities=21% Similarity=0.338 Sum_probs=65.4
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||.||+|.. .+++.||||++........ ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKS-DMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchH-HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEE
Confidence 5788999999999999999974 4689999999976432222 2356789999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+ +|+|.+++
T Consensus 92 ~e~~-~~~l~~~~ 103 (275)
T 2eue_A 92 IEYA-GNELFDYI 103 (275)
T ss_dssp EECC-CEEHHHHH
T ss_pred ehhc-CCcHHHHH
Confidence 9999 66777654
No 296
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=99.06 E-value=2.9e-10 Score=115.38 Aligned_cols=89 Identities=25% Similarity=0.362 Sum_probs=73.9
Q ss_pred CCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe----CCee
Q 041300 625 DFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH----AQHS 699 (716)
Q Consensus 625 ~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~----~~~~ 699 (716)
.|...+.||+|+||.||+|.. .++..||+|++...... ....+.+.+|++++++++|||||++++++.. ....
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 104 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT--KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCI 104 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhC--HHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceE
Confidence 467778899999999999965 46789999998754322 2245679999999999999999999999875 3457
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++||||+++|+|.+++
T Consensus 105 ~lv~e~~~~~~L~~~l 120 (290)
T 1t4h_A 105 VLVTELMTSGTLKTYL 120 (290)
T ss_dssp EEEEECCCSCBHHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 9999999999999886
No 297
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.06 E-value=2.8e-10 Score=117.67 Aligned_cols=88 Identities=32% Similarity=0.435 Sum_probs=74.7
Q ss_pred cCCcccccccCCCceEEEEEEc-----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe--C
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--A 696 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~--~ 696 (716)
..|...+.||+|+||.||++++ .++..||||++.... ....+.+.+|++++++++||||+++++++.. .
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 98 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG----PDQQRDFQREIQILKALHSDFIVKYRGVSYGPGR 98 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC----HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSS
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC----HHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCC
Confidence 4688899999999999999984 357899999997531 1245679999999999999999999999874 4
Q ss_pred CeeeEEEcccCCCCHHhHh
Q 041300 697 QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 ~~~~lv~Ey~~~GsL~~~l 715 (716)
...++||||+++|+|.+++
T Consensus 99 ~~~~lv~e~~~~~~L~~~l 117 (327)
T 3lxl_A 99 QSLRLVMEYLPSGCLRDFL 117 (327)
T ss_dssp CEEEEEEECCTTCBHHHHH
T ss_pred ceEEEEEeecCCCCHHHHH
Confidence 5689999999999999876
No 298
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.05 E-value=1.8e-10 Score=119.48 Aligned_cols=89 Identities=26% Similarity=0.473 Sum_probs=74.5
Q ss_pred cCCcccccccCCCceEEEEEEcCC-----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPS-----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH 698 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~-----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~ 698 (716)
..|...+.||+|+||.||+|.... +..||||++.... .......|.+|++++.+++|||||++++++...+.
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 120 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY---TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKP 120 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCC
Confidence 456677899999999999996532 2369999997532 11244679999999999999999999999998899
Q ss_pred eeEEEcccCCCCHHhHh
Q 041300 699 SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 ~~lv~Ey~~~GsL~~~l 715 (716)
.++||||+++|+|.+++
T Consensus 121 ~~lv~e~~~~~~L~~~l 137 (333)
T 1mqb_A 121 MMIITEYMENGALDKFL 137 (333)
T ss_dssp EEEEEECCTTEEHHHHH
T ss_pred cEEEEeCCCCCcHHHHH
Confidence 99999999999999886
No 299
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.05 E-value=2.5e-10 Score=117.46 Aligned_cols=89 Identities=22% Similarity=0.389 Sum_probs=73.4
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe----CC
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH----AQ 697 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~----~~ 697 (716)
..+|...+.||+|+||.||++.. .+++.||||++... . ....+.+.+|++++++++|||||++++++.. ..
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH---E-QQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKH 103 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES---S-HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC---C-HHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCc
Confidence 35788999999999999999975 57899999998652 1 1245679999999999999999999999973 34
Q ss_pred eeeEEEcccCCCCHHhHh
Q 041300 698 HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 ~~~lv~Ey~~~GsL~~~l 715 (716)
..++||||+++|+|.+++
T Consensus 104 ~~~lv~e~~~~~~L~~~l 121 (317)
T 2buj_A 104 EAWLLLPFFKRGTLWNEI 121 (317)
T ss_dssp EEEEEEECCTTCBHHHHH
T ss_pred eeEEEEEeCCCCcHHHHH
Confidence 679999999999999876
No 300
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=99.05 E-value=2.7e-10 Score=115.41 Aligned_cols=91 Identities=22% Similarity=0.389 Sum_probs=78.2
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.+.|...+.||+|+||.||+|... +++.||||++....... ...+.+.+|++++++++||||+++++++...+..++
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 98 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN--KDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYI 98 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSS--SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccch--HHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEE
Confidence 357899999999999999999754 68899999986532221 135679999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+++|+|.+++
T Consensus 99 v~e~~~~~~L~~~l 112 (287)
T 2wei_A 99 VGELYTGGELFDEI 112 (287)
T ss_dssp EECCCCSCBHHHHH
T ss_pred EEEccCCCCHHHHH
Confidence 99999999998765
No 301
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.05 E-value=3.1e-10 Score=114.98 Aligned_cols=87 Identities=28% Similarity=0.418 Sum_probs=72.1
Q ss_pred CCcccc-cccCCCceEEEEEEcC---CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 625 DFDAEY-CIGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 625 ~~~~~~-~ig~g~~g~v~~~~~~---~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
+|.... .||+|+||.||+|... ++..||||++.... .....+++.+|++++++++||||+++++++ ..+..+
T Consensus 10 ~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~ 85 (287)
T 1u59_A 10 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---EKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALM 85 (287)
T ss_dssp GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEE
T ss_pred HhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc---chhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcE
Confidence 344444 8999999999999753 57789999997632 222457799999999999999999999999 556789
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+||||+++|+|.+++
T Consensus 86 lv~e~~~~~~L~~~l 100 (287)
T 1u59_A 86 LVMEMAGGGPLHKFL 100 (287)
T ss_dssp EEEECCTTEEHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 999999999999886
No 302
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=99.05 E-value=3e-10 Score=115.37 Aligned_cols=87 Identities=26% Similarity=0.429 Sum_probs=73.0
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||+||+|... +++.||||++....... .....+.+|++++++++|||||++++++.+++..++|
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 79 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDE--GVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV 79 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSST--THHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcC--CcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEE
Confidence 46888899999999999999754 68999999997643222 2346789999999999999999999999999999999
Q ss_pred EcccCCCCHHh
Q 041300 703 YEFLERGSLAA 713 (716)
Q Consensus 703 ~Ey~~~GsL~~ 713 (716)
||||++ ++.+
T Consensus 80 ~e~~~~-~l~~ 89 (292)
T 3o0g_A 80 FEFCDQ-DLKK 89 (292)
T ss_dssp EECCSE-EHHH
T ss_pred EecCCC-CHHH
Confidence 999986 4444
No 303
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=99.05 E-value=7.4e-11 Score=123.21 Aligned_cols=91 Identities=20% Similarity=0.402 Sum_probs=77.1
Q ss_pred hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccch-------------hhHHHHHHHHHHHhcCCCCCcccc
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQI-------------ADQKEFLTEVQALTEIRHRNIVKF 689 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~-------------~~~~~~~~ei~~l~~l~H~niv~l 689 (716)
.++|...+.||+|+||.||+|.. +++.||||++......... ...+.|.+|++++.+++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 35788999999999999999987 8999999998653211100 011679999999999999999999
Q ss_pred ceEEEeCCeeeEEEcccCCCCHHhH
Q 041300 690 YGFCSHAQHSFLVYEFLERGSLAAI 714 (716)
Q Consensus 690 ~g~~~~~~~~~lv~Ey~~~GsL~~~ 714 (716)
++++.+.+..++||||+++|+|.++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~ 133 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKF 133 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHH
Confidence 9999999999999999999999887
No 304
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=99.04 E-value=2.7e-10 Score=115.02 Aligned_cols=89 Identities=25% Similarity=0.425 Sum_probs=73.7
Q ss_pred hcCCcccccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH 698 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~ 698 (716)
...|...+.||+|+||.||+|.... +..||||++.... .....+.|.+|+.++++++|||||++++++ ..+.
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~ 89 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGVI-TENP 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT---SHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-CSSS
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCccceEEEEE-ccCc
Confidence 3568889999999999999997532 4579999987532 122456799999999999999999999998 4567
Q ss_pred eeEEEcccCCCCHHhHh
Q 041300 699 SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 ~~lv~Ey~~~GsL~~~l 715 (716)
.++||||+++|+|.+++
T Consensus 90 ~~lv~e~~~~~~L~~~l 106 (281)
T 1mp8_A 90 VWIIMELCTLGELRSFL 106 (281)
T ss_dssp CEEEEECCTTEEHHHHH
T ss_pred cEEEEecCCCCCHHHHH
Confidence 89999999999999876
No 305
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=99.04 E-value=1.6e-10 Score=118.75 Aligned_cols=96 Identities=23% Similarity=0.423 Sum_probs=78.4
Q ss_pred HHHHHhhcCCcccccccCCCceEEEEEEc------CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCcccc
Q 041300 617 DEIVRETNDFDAEYCIGNGGHGSVYRAEL------PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKF 689 (716)
Q Consensus 617 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l 689 (716)
..+....++|...+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|++++.++ +|||||++
T Consensus 20 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 20 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA---THSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred cceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC---CcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 34444567899999999999999999963 346789999997532 122446799999999999 79999999
Q ss_pred ceEEEeCC-eeeEEEcccCCCCHHhHh
Q 041300 690 YGFCSHAQ-HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 690 ~g~~~~~~-~~~lv~Ey~~~GsL~~~l 715 (716)
++++...+ ..++||||+++|+|.+++
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l 123 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYL 123 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHH
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHH
Confidence 99997755 489999999999999886
No 306
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=99.03 E-value=2.2e-10 Score=118.58 Aligned_cols=91 Identities=25% Similarity=0.431 Sum_probs=73.9
Q ss_pred hhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
..++|...+.||+|+||.||+|. ..+++.||||++....... ...+.+.+|++++++++|||||++++++.+++..+
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEE--GVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH 109 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC----------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEccccccc--ccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence 34679999999999999999996 4468899999997532211 13456889999999999999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++ +|.+++
T Consensus 110 lv~e~~~~-~L~~~~ 123 (329)
T 3gbz_A 110 LIFEYAEN-DLKKYM 123 (329)
T ss_dssp EEEECCSE-EHHHHH
T ss_pred EEEecCCC-CHHHHH
Confidence 99999984 898875
No 307
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.03 E-value=3e-10 Score=115.96 Aligned_cols=89 Identities=25% Similarity=0.478 Sum_probs=75.0
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.+.|...+.||+|+||.||+|... ++..||+|++..... ...+.|.+|++++.+++||||+++++++..++..++
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 93 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSE----EELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWI 93 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC--------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCH----HHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEE
Confidence 356888899999999999999765 588999999875321 134679999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+++|+|.+++
T Consensus 94 v~e~~~~~~l~~~~ 107 (302)
T 2j7t_A 94 MIEFCPGGAVDAIM 107 (302)
T ss_dssp EEECCTTEEHHHHH
T ss_pred EEEeCCCCcHHHHH
Confidence 99999999998875
No 308
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=99.03 E-value=3.5e-10 Score=115.39 Aligned_cols=87 Identities=25% Similarity=0.467 Sum_probs=74.4
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-------
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH------- 695 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~------- 695 (716)
++|...+.||+|+||.||+|.. .+++.||||++... ....+.+.+|++++++++||||+++++++.+
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 80 (303)
T 1zy4_A 6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-----EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKP 80 (303)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-
T ss_pred ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-----HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhh
Confidence 4688889999999999999975 47899999998642 1245679999999999999999999999865
Q ss_pred ------CCeeeEEEcccCCCCHHhHh
Q 041300 696 ------AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 696 ------~~~~~lv~Ey~~~GsL~~~l 715 (716)
.+..++||||+++|+|.+++
T Consensus 81 ~~~~~~~~~~~lv~e~~~~~~L~~~l 106 (303)
T 1zy4_A 81 MTAVKKKSTLFIQMEYCENGTLYDLI 106 (303)
T ss_dssp -----CEEEEEEEEECCCSCBHHHHH
T ss_pred hcccccCCceEEEEecCCCCCHHHhh
Confidence 35679999999999999886
No 309
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.03 E-value=3.9e-10 Score=116.53 Aligned_cols=88 Identities=36% Similarity=0.566 Sum_probs=73.7
Q ss_pred cCCcccccccCCCceEEEEEEc-----CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC-
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-----PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ- 697 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~- 697 (716)
..|...+.||+|+||.||++++ .+++.||||++.... . ...+.|.+|++++++++|||||++++++...+
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 116 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST---E-EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR 116 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC---S-HHHHHHHHHHHHHHTCCCTTBCCEEEEECC---
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC---H-HHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCC
Confidence 4688889999999999999974 357899999997531 1 24567999999999999999999999986644
Q ss_pred -eeeEEEcccCCCCHHhHh
Q 041300 698 -HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 -~~~lv~Ey~~~GsL~~~l 715 (716)
..++||||+++|+|.+++
T Consensus 117 ~~~~lv~e~~~~~~L~~~l 135 (326)
T 2w1i_A 117 RNLKLIMEYLPYGSLRDYL 135 (326)
T ss_dssp -CCEEEECCCTTCBHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 679999999999999886
No 310
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=99.02 E-value=1.1e-10 Score=119.33 Aligned_cols=91 Identities=30% Similarity=0.468 Sum_probs=63.9
Q ss_pred hhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
...+|...+.||+|+||.||+|.. .+++.||||++...... ...+++.+|++++.+++||||+++++++...+..+
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 89 (303)
T 2vwi_A 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQ---TSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELW 89 (303)
T ss_dssp CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC-------------------CCCCCCCTTBCCEEEEEESSSCEE
T ss_pred chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcc---hhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcE
Confidence 356799999999999999999975 36889999998653211 13467899999999999999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+||||+++|+|.+++
T Consensus 90 lv~e~~~~~~L~~~l 104 (303)
T 2vwi_A 90 LVMKLLSGGSVLDII 104 (303)
T ss_dssp EEEECCTTCBHHHHH
T ss_pred EEehhccCCchHHHH
Confidence 999999999999876
No 311
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=99.02 E-value=1.9e-10 Score=120.98 Aligned_cols=88 Identities=27% Similarity=0.509 Sum_probs=71.8
Q ss_pred CCcccccccCCCceEEEEEEcC--CC--CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-CCee
Q 041300 625 DFDAEYCIGNGGHGSVYRAELP--SG--EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH-AQHS 699 (716)
Q Consensus 625 ~~~~~~~ig~g~~g~v~~~~~~--~~--~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~-~~~~ 699 (716)
.|...++||+|+||+||+|... ++ ..||||.+.... . ....++|.+|+.++++++|||||+++++|.. ++..
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~--~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ 166 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT--D-IGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP 166 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCS--C-SHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCC
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCC--C-HHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCe
Confidence 4666789999999999999753 22 368999987532 1 1245789999999999999999999999865 4578
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++||||+++|+|.+++
T Consensus 167 ~lv~e~~~~g~L~~~l 182 (373)
T 3c1x_A 167 LVVLPYMKHGDLRNFI 182 (373)
T ss_dssp EEEEECCTTCBHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 9999999999999986
No 312
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=99.02 E-value=1.9e-10 Score=116.27 Aligned_cols=84 Identities=30% Similarity=0.531 Sum_probs=72.2
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-------
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH------- 695 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~------- 695 (716)
.+|...+.||+|+||.||+|... +++.||||++.... ..+.+|++++++++||||+++++++..
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 82 (284)
T 2a19_B 11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN--------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPET 82 (284)
T ss_dssp HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS--------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---
T ss_pred cccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc--------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccc
Confidence 46888999999999999999765 68999999987521 347789999999999999999999864
Q ss_pred ---------CCeeeEEEcccCCCCHHhHh
Q 041300 696 ---------AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 696 ---------~~~~~lv~Ey~~~GsL~~~l 715 (716)
....++||||+++|+|.+++
T Consensus 83 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l 111 (284)
T 2a19_B 83 SSKNSSRSKTKCLFIQMEFCDKGTLEQWI 111 (284)
T ss_dssp ------CCEEEEEEEEECCCCSCBHHHHH
T ss_pred ccccccccCcceEEEEEeccCCCCHHHHH
Confidence 34579999999999999986
No 313
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=99.02 E-value=3.7e-10 Score=115.99 Aligned_cols=87 Identities=29% Similarity=0.522 Sum_probs=71.8
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
...|...+.||+|+||.||+|... +|+.||||++.... ..+++.+|++++.+++||||+++++++...+..++
T Consensus 28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 101 (314)
T 3com_A 28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES------DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWI 101 (314)
T ss_dssp --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS------CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH------HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence 456888999999999999999754 58999999987531 23568999999999999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+++|+|.+++
T Consensus 102 v~e~~~~~~L~~~~ 115 (314)
T 3com_A 102 VMEYCGAGSVSDII 115 (314)
T ss_dssp EEECCTTEEHHHHH
T ss_pred EeecCCCCCHHHHH
Confidence 99999999999876
No 314
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=99.02 E-value=3.4e-10 Score=117.00 Aligned_cols=89 Identities=29% Similarity=0.569 Sum_probs=73.5
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCE--EEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEV--VAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHS 699 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~--vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~ 699 (716)
++|...+.||+|+||.||+|... ++.. ||||++..... ....+.+.+|++++.++ +||||+++++++.+.+..
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~---~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~ 101 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS---KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL 101 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC---------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccc---hHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCce
Confidence 46888999999999999999653 4554 49999875321 11345799999999999 999999999999999999
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++||||+++|+|.+++
T Consensus 102 ~lv~e~~~~~~L~~~l 117 (327)
T 1fvr_A 102 YLAIEYAPHGNLLDFL 117 (327)
T ss_dssp EEEECCCTTCBHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 9999999999999986
No 315
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=99.02 E-value=3.3e-10 Score=117.33 Aligned_cols=90 Identities=27% Similarity=0.501 Sum_probs=76.6
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...++||+|+||.||+|... +++.||||++..... .....+.+.+|++++.+++|||||++++++.+.+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 102 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDD--DKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLV 102 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSS--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCC--chHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEE
Confidence 46888899999999999999754 589999999865322 222346688999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 103 ~e~~~~~~l~~~~ 115 (331)
T 4aaa_A 103 FEFVDHTILDDLE 115 (331)
T ss_dssp EECCSEEHHHHHH
T ss_pred EecCCcchHHHHH
Confidence 9999999888763
No 316
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.02 E-value=5.4e-10 Score=113.77 Aligned_cols=93 Identities=22% Similarity=0.308 Sum_probs=77.4
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCcc-----chhhHHHHHHHHHHHhcCC-CCCccccceEEEe
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCD-----QIADQKEFLTEVQALTEIR-HRNIVKFYGFCSH 695 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~-----~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~ 695 (716)
..+|...+.||+|+||.||+|... +++.||||++....... .....+.+.+|++++.+++ ||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 357889999999999999999754 68899999997532111 0112456889999999996 9999999999999
Q ss_pred CCeeeEEEcccCCCCHHhHh
Q 041300 696 AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 696 ~~~~~lv~Ey~~~GsL~~~l 715 (716)
.+..++||||+++|+|.+++
T Consensus 96 ~~~~~lv~e~~~~~~L~~~l 115 (298)
T 1phk_A 96 NTFFFLVFDLMKKGELFDYL 115 (298)
T ss_dssp SSEEEEEEECCTTCBHHHHH
T ss_pred CCeEEEEEeccCCCcHHHHH
Confidence 99999999999999999886
No 317
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=99.01 E-value=1.8e-10 Score=118.13 Aligned_cols=89 Identities=22% Similarity=0.275 Sum_probs=71.7
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l 701 (716)
++|...++||+|+||+||+|... +++.||||++...... .....++.+|+..+.++ +|||||+++++|.+++..++
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~l 134 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRG--PKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYL 134 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCS--HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccC--hHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEE
Confidence 46888999999999999999765 6899999998653221 12344566777666655 99999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||| +|+|.+++
T Consensus 135 v~e~~-~~~L~~~~ 147 (311)
T 3p1a_A 135 QTELC-GPSLQQHC 147 (311)
T ss_dssp EEECC-CCBHHHHH
T ss_pred EEecc-CCCHHHHH
Confidence 99999 67888765
No 318
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=99.01 E-value=2.7e-10 Score=114.84 Aligned_cols=86 Identities=29% Similarity=0.527 Sum_probs=73.0
Q ss_pred hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-CeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-QHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-~~~~l 701 (716)
..+|...+.||+|+||.||+|.. .++.||||++.... ..+.|.+|++++++++|||||++++++.+. +..++
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~------~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~l 92 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYI 92 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC--------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEE
T ss_pred hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh------HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEE
Confidence 35688899999999999999987 47899999987521 346799999999999999999999997654 46899
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+++|+|.+++
T Consensus 93 v~e~~~~~~L~~~l 106 (278)
T 1byg_A 93 VTEYMAKGSLVDYL 106 (278)
T ss_dssp EECCCTTEEHHHHH
T ss_pred EEecCCCCCHHHHH
Confidence 99999999999876
No 319
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=99.01 E-value=2.1e-10 Score=118.33 Aligned_cols=91 Identities=22% Similarity=0.318 Sum_probs=71.3
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCc----cchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPC----DQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH 698 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~----~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~ 698 (716)
++|...+.||+|+||.||+|.. .+++.||||++...... ........+.+|++++++++||||+++++++..++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 88 (322)
T 2ycf_A 10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED- 88 (322)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-
T ss_pred hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-
Confidence 4688899999999999999965 45789999999753211 01112345889999999999999999999986654
Q ss_pred eeEEEcccCCCCHHhHh
Q 041300 699 SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 ~~lv~Ey~~~GsL~~~l 715 (716)
.|+||||+++|+|.+++
T Consensus 89 ~~lv~e~~~~~~L~~~~ 105 (322)
T 2ycf_A 89 YYIVLELMEGGELFDKV 105 (322)
T ss_dssp EEEEEECCTTEETHHHH
T ss_pred eEEEEecCCCCcHHHHH
Confidence 89999999999998876
No 320
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.01 E-value=3.5e-10 Score=127.25 Aligned_cols=83 Identities=30% Similarity=0.454 Sum_probs=69.0
Q ss_pred ccccCCCceEEEEEEcC---CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEEEccc
Q 041300 630 YCIGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLVYEFL 706 (716)
Q Consensus 630 ~~ig~g~~g~v~~~~~~---~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv~Ey~ 706 (716)
+.||+|+||.||+|.+. .++.||||+++.... . ....++|.+|++++.+++|||||+++++|. .+..++|||||
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~-~-~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-~~~~~lv~E~~ 451 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN-D-PALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMA 451 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGG-C-GGGHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECC
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccC-C-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCCEEEEEEcc
Confidence 47999999999999543 457899999975321 1 124578999999999999999999999996 45689999999
Q ss_pred CCCCHHhHh
Q 041300 707 ERGSLAAIL 715 (716)
Q Consensus 707 ~~GsL~~~l 715 (716)
++|+|.+++
T Consensus 452 ~~g~L~~~l 460 (635)
T 4fl3_A 452 ELGPLNKYL 460 (635)
T ss_dssp TTEEHHHHH
T ss_pred CCCCHHHHH
Confidence 999999886
No 321
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=99.01 E-value=2.5e-10 Score=115.92 Aligned_cols=89 Identities=28% Similarity=0.410 Sum_probs=71.6
Q ss_pred cCCcccc-cccCCCceEEEEEEc---CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300 624 NDFDAEY-CIGNGGHGSVYRAEL---PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS 699 (716)
Q Consensus 624 ~~~~~~~-~ig~g~~g~v~~~~~---~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~ 699 (716)
..|.... .||+|+||.||+|.. ..+..||||++..... .....++|.+|++++++++||||+++++++ ..+..
T Consensus 16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~ 92 (291)
T 1xbb_A 16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN--DPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESW 92 (291)
T ss_dssp GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-------CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSE
T ss_pred hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeeccccc--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCc
Confidence 4566666 899999999999954 2467899999975321 112356799999999999999999999999 56778
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++||||+++|+|.+++
T Consensus 93 ~lv~e~~~~~~L~~~l 108 (291)
T 1xbb_A 93 MLVMEMAELGPLNKYL 108 (291)
T ss_dssp EEEEECCTTEEHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 9999999999999886
No 322
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=99.00 E-value=2.1e-10 Score=117.78 Aligned_cols=93 Identities=25% Similarity=0.453 Sum_probs=71.4
Q ss_pred HhhcCCcccccccCCCceEEEEEEcC----CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300 621 RETNDFDAEYCIGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA 696 (716)
Q Consensus 621 ~~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~ 696 (716)
.....|...+.||+|+||.||+|... .+..||||++..... .....+.|.+|++++++++||||+++++++...
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~ 108 (313)
T 3brb_A 31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNS--SQREIEEFLSEAACMKDFSHPNVIRLLGVCIEM 108 (313)
T ss_dssp CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CC--CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-
T ss_pred cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEecccc--chhHHHHHHHHHHHHhcCCCCCeeeeeEEEeec
Confidence 34567888999999999999999653 244899999975322 122456799999999999999999999999775
Q ss_pred Ce-----eeEEEcccCCCCHHhHh
Q 041300 697 QH-----SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 ~~-----~~lv~Ey~~~GsL~~~l 715 (716)
+. .++||||+++|+|.+++
T Consensus 109 ~~~~~~~~~~v~e~~~~~~L~~~l 132 (313)
T 3brb_A 109 SSQGIPKPMVILPFMKYGDLHTYL 132 (313)
T ss_dssp ------CEEEEEECCTTCBHHHHH
T ss_pred cccCCcccEEEEecccCCCHHHHH
Confidence 53 49999999999999876
No 323
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=99.00 E-value=5.3e-10 Score=114.39 Aligned_cols=88 Identities=30% Similarity=0.419 Sum_probs=73.2
Q ss_pred hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
..+|...+.||+|+||.||+|... ..+|||+++.... .....+.|.+|++++++++|||||++++++. .+..++|
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv 109 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDP--TPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIV 109 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCC--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEE
Confidence 457888999999999999999864 4689999875332 2224567999999999999999999999874 5568999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 110 ~e~~~~~~L~~~l 122 (307)
T 3lb7_A 110 TQWCEGSSLYKHL 122 (307)
T ss_dssp EECCSSCBHHHHH
T ss_pred EecCCCCcHHHHH
Confidence 9999999999876
No 324
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=99.00 E-value=4.3e-10 Score=114.55 Aligned_cols=89 Identities=25% Similarity=0.449 Sum_probs=72.4
Q ss_pred cCCcccccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe-CCe
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH-AQH 698 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~-~~~ 698 (716)
..|...++||+|+||.||+|...+ ...||||.+.... .....+.|.+|++++++++|||||+++++|.. ++.
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 101 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGS 101 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCC---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSC
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCC---CHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCc
Confidence 457788999999999999997532 2358999987532 22245679999999999999999999999754 457
Q ss_pred eeEEEcccCCCCHHhHh
Q 041300 699 SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 ~~lv~Ey~~~GsL~~~l 715 (716)
.++||||+++|+|.+++
T Consensus 102 ~~~v~e~~~~~~L~~~l 118 (298)
T 3f66_A 102 PLVVLPYMKHGDLRNFI 118 (298)
T ss_dssp CEEEEECCTTCBHHHHH
T ss_pred eEEEEeCCCCCCHHHHH
Confidence 89999999999999886
No 325
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=99.00 E-value=6.8e-10 Score=115.52 Aligned_cols=87 Identities=31% Similarity=0.509 Sum_probs=75.0
Q ss_pred HhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhc--CCCCCccccceEEEeCC-
Q 041300 621 RETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTE--IRHRNIVKFYGFCSHAQ- 697 (716)
Q Consensus 621 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~--l~H~niv~l~g~~~~~~- 697 (716)
...++|...+.||+|+||.||+|+. +++.||||++... ....+.+|++++.. ++||||+++++++...+
T Consensus 39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~ 110 (342)
T 1b6c_B 39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR-------EERSWFREAEIYQTVMLRHENILGFIAADNKDNG 110 (342)
T ss_dssp HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG-------GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCS
T ss_pred cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch-------hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCC
Confidence 3346799999999999999999987 5889999998642 34568889998887 79999999999998875
Q ss_pred ---eeeEEEcccCCCCHHhHh
Q 041300 698 ---HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 ---~~~lv~Ey~~~GsL~~~l 715 (716)
..++||||+++|+|.+++
T Consensus 111 ~~~~~~lv~e~~~~g~L~~~l 131 (342)
T 1b6c_B 111 TWTQLWLVSDYHEHGSLFDYL 131 (342)
T ss_dssp SCCCEEEEECCCTTCBHHHHH
T ss_pred ccceeEEEEeecCCCcHHHHH
Confidence 789999999999999886
No 326
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=99.00 E-value=6.9e-10 Score=115.18 Aligned_cols=86 Identities=28% Similarity=0.470 Sum_probs=71.9
Q ss_pred hhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC--CCCCccccceEEEeC---
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI--RHRNIVKFYGFCSHA--- 696 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l--~H~niv~l~g~~~~~--- 696 (716)
..++|...+.||+|+||.||+|+.. ++.||||++... ....+.+|.+++... +|||||++++++...
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~-------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~ 106 (337)
T 3mdy_A 35 IAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT-------EEASWFRETEIYQTVLMRHENILGFIAADIKGTGS 106 (337)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG-------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGG
T ss_pred cccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc-------ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCC
Confidence 3457999999999999999999874 889999998642 234556666666655 999999999999887
Q ss_pred -CeeeEEEcccCCCCHHhHh
Q 041300 697 -QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 -~~~~lv~Ey~~~GsL~~~l 715 (716)
...++|||||++|+|.+++
T Consensus 107 ~~~~~lv~e~~~~g~L~~~l 126 (337)
T 3mdy_A 107 WTQLYLITDYHENGSLYDYL 126 (337)
T ss_dssp GCEEEEEECCCTTCBHHHHH
T ss_pred CCceEEEEeccCCCcHHHHh
Confidence 6789999999999999886
No 327
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=98.99 E-value=5.1e-10 Score=113.49 Aligned_cols=88 Identities=31% Similarity=0.453 Sum_probs=73.6
Q ss_pred hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
.+.|...+.||+|+||.||+|... ..||||++..... .....+.|.+|++++++++||||+++++++ ..+..++|
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv 97 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAP--TPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIV 97 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCC--CHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEE
Confidence 457889999999999999999864 3599999975432 222456799999999999999999999965 55668999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||+++|+|.+++
T Consensus 98 ~e~~~~~~L~~~l 110 (289)
T 3og7_A 98 TQWCEGSSLYHHL 110 (289)
T ss_dssp EECCCEEEHHHHH
T ss_pred EEecCCCcHHHHH
Confidence 9999999999876
No 328
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=98.98 E-value=5.4e-10 Score=113.85 Aligned_cols=89 Identities=33% Similarity=0.523 Sum_probs=72.5
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||.||+|... +++.||||++....... .....+.+|++++++++||||+++++++..++..++|
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 80 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE--GVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV 80 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccch--hhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEE
Confidence 46888899999999999999754 68999999987532111 1235688999999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||++ |+|.+++
T Consensus 81 ~e~~~-~~L~~~~ 92 (299)
T 2r3i_A 81 FEFLH-QDLKKFM 92 (299)
T ss_dssp EECCS-EEHHHHH
T ss_pred EEccc-CCHHHHH
Confidence 99998 5888875
No 329
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=98.98 E-value=6.5e-10 Score=115.71 Aligned_cols=89 Identities=18% Similarity=0.299 Sum_probs=76.5
Q ss_pred cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCC--CCccccceEEEeCCeeeE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH--RNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H--~niv~l~g~~~~~~~~~l 701 (716)
..|...+.||+|+||.||++...+++.||||++..... .....+.|.+|++++.+++| ||||++++++..++..++
T Consensus 9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 86 (343)
T 3dbq_A 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 86 (343)
T ss_dssp CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeecccc--chHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence 46888999999999999999888899999999875432 22245679999999999987 999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||| +.+|+|.+++
T Consensus 87 v~e-~~~~~L~~~l 99 (343)
T 3dbq_A 87 VME-CGNIDLNSWL 99 (343)
T ss_dssp EEC-CCSEEHHHHH
T ss_pred EEe-CCCCCHHHHH
Confidence 999 5688999876
No 330
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=98.98 E-value=7.8e-10 Score=112.59 Aligned_cols=88 Identities=19% Similarity=0.356 Sum_probs=71.8
Q ss_pred CCcccccccCCCceEEEEEEcC-CC---CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee-
Q 041300 625 DFDAEYCIGNGGHGSVYRAELP-SG---EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS- 699 (716)
Q Consensus 625 ~~~~~~~ig~g~~g~v~~~~~~-~~---~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~- 699 (716)
.|...++||+|+||.||+|... ++ ..||||++.... .....+.|.+|++++++++|||||++++++.+.+..
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 98 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRIT---EMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLP 98 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCC---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCC
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccc---cHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCc
Confidence 3556689999999999999743 22 379999987532 222456799999999999999999999999876655
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++||||+.+|+|.+++
T Consensus 99 ~~v~e~~~~~~L~~~~ 114 (298)
T 3pls_A 99 HVLLPYMCHGDLLQFI 114 (298)
T ss_dssp EEEECCCTTCBHHHHH
T ss_pred EEEEecccCCCHHHHH
Confidence 9999999999999876
No 331
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=98.98 E-value=2.6e-10 Score=117.86 Aligned_cols=92 Identities=27% Similarity=0.508 Sum_probs=77.6
Q ss_pred HHHhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEe-
Q 041300 619 IVRETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSH- 695 (716)
Q Consensus 619 ~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~- 695 (716)
+....+.|...+.||+|+||.||+|.. .+++.||||++..... ....+.+|+.++.++ +||||+++++++..
T Consensus 19 l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~ 93 (326)
T 2x7f_A 19 LRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-----EEEEIKQEINMLKKYSHHRNIATYYGAFIKK 93 (326)
T ss_dssp CCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-----TTHHHHHHHHHHHHHCCSTTBCCEEEEEEEC
T ss_pred ccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-----cHHHHHHHHHHHHhccCCCCeeeeeeEEeec
Confidence 334567899999999999999999975 4689999999875321 236789999999999 89999999999977
Q ss_pred -----CCeeeEEEcccCCCCHHhHh
Q 041300 696 -----AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 696 -----~~~~~lv~Ey~~~GsL~~~l 715 (716)
.+..++||||+++|+|.+++
T Consensus 94 ~~~~~~~~~~lv~e~~~~~~L~~~l 118 (326)
T 2x7f_A 94 NPPGMDDQLWLVMEFCGAGSVTDLI 118 (326)
T ss_dssp C--CCCCEEEEEEECCTTEEHHHHH
T ss_pred cCccccceEEEEEEcCCCCcHHHHH
Confidence 45789999999999999886
No 332
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=98.98 E-value=7.7e-10 Score=114.48 Aligned_cols=85 Identities=21% Similarity=0.399 Sum_probs=74.3
Q ss_pred cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEe--CCee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSH--AQHS 699 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~--~~~~ 699 (716)
++|...+.||+|+||.||+|. ..+++.||||++... ..+.+.+|++++.+++ ||||+++++++.. ....
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-------~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~ 108 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-------KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP 108 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-------CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc-------chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCce
Confidence 568889999999999999996 457899999998742 3467899999999997 9999999999987 5568
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++||||+++|+|.+++
T Consensus 109 ~lv~e~~~~~~l~~~~ 124 (330)
T 3nsz_A 109 ALVFEHVNNTDFKQLY 124 (330)
T ss_dssp EEEEECCCCCCHHHHG
T ss_pred EEEEeccCchhHHHHH
Confidence 9999999999998875
No 333
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=98.97 E-value=5.6e-10 Score=117.18 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=80.6
Q ss_pred hHHHHHHhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCcc-------chhhHHHHHHHHHHHhcCCCCCcc
Q 041300 615 VYDEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCD-------QIADQKEFLTEVQALTEIRHRNIV 687 (716)
Q Consensus 615 ~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~-------~~~~~~~~~~ei~~l~~l~H~niv 687 (716)
...++......|...+.||+|+||.||+|...++..||||++....... .....+.+.+|++++++++|||||
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 4567777889999999999999999999987779999999986532211 111236799999999999999999
Q ss_pred ccceEEEeCC-----eeeEEEcccCCCCHHhHh
Q 041300 688 KFYGFCSHAQ-----HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 688 ~l~g~~~~~~-----~~~lv~Ey~~~GsL~~~l 715 (716)
++++++...+ ..|+||||++ |+|.+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~ 124 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVI 124 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHH
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHH
Confidence 9999996532 5799999998 5777764
No 334
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=98.97 E-value=6.9e-10 Score=114.89 Aligned_cols=85 Identities=21% Similarity=0.246 Sum_probs=73.4
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l 701 (716)
.+|...+.||+|+||+||+|.. .+++.||||++..... ...+.+|+++++++ +||||+++++++..++..++
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~l 82 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR------APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAM 82 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS------SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEE
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc------hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEE
Confidence 5688899999999999999974 5789999999865321 23588999999999 99999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+ +|+|.+++
T Consensus 83 v~e~~-~~~L~~~~ 95 (330)
T 2izr_A 83 VLELL-GPSLEDLF 95 (330)
T ss_dssp EEECC-CCBHHHHH
T ss_pred EEEeC-CCCHHHHH
Confidence 99999 99999876
No 335
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=98.96 E-value=7.5e-10 Score=117.30 Aligned_cols=89 Identities=18% Similarity=0.293 Sum_probs=76.1
Q ss_pred cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC--CCCccccceEEEeCCeeeE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR--HRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~--H~niv~l~g~~~~~~~~~l 701 (716)
..|...+.||+|+||.||++...+++.||||++..... .....+.|.+|++++.+++ |||||++++++..++..|+
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~l 133 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 133 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccc--cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEE
Confidence 35888999999999999999877799999999975432 1224567999999999996 5999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||| +.+|+|.+++
T Consensus 134 v~E-~~~~~L~~~l 146 (390)
T 2zmd_A 134 VME-CGNIDLNSWL 146 (390)
T ss_dssp EEE-CCSEEHHHHH
T ss_pred EEe-cCCCCHHHHH
Confidence 999 6788999876
No 336
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=98.96 E-value=8.2e-10 Score=111.40 Aligned_cols=89 Identities=24% Similarity=0.436 Sum_probs=73.2
Q ss_pred hcCCcccccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH 698 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~ 698 (716)
..+|...+.||+|+||.||+|.... +..||||.+.... .....+.|.+|++++++++||||+++++++.+ +.
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~ 86 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC---TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EP 86 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS---CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SS
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc---CchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CC
Confidence 4578889999999999999997532 3369999987632 12245679999999999999999999999854 55
Q ss_pred eeEEEcccCCCCHHhHh
Q 041300 699 SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 ~~lv~Ey~~~GsL~~~l 715 (716)
.++||||+++|+|.+++
T Consensus 87 ~~~v~e~~~~~~L~~~l 103 (281)
T 3cc6_A 87 TWIIMELYPYGELGHYL 103 (281)
T ss_dssp CEEEEECCTTCBHHHHH
T ss_pred CEEEEecCCCCCHHHHH
Confidence 79999999999999876
No 337
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=98.96 E-value=2.7e-10 Score=118.12 Aligned_cols=93 Identities=22% Similarity=0.278 Sum_probs=76.6
Q ss_pred hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccc----hhhHHHHHHHHHHHhcCCCCCccccceEEEeCC
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQ----IADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ 697 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~----~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~ 697 (716)
..+|...+.||+|+||.||+|. ..+++.||||++........ ....+.+.+|++++++++|||||++++++.+.+
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~ 102 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG 102 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence 4578899999999999999996 45688999999976432211 002235788999999999999999999999999
Q ss_pred eeeEEEcccCCC-CHHhHh
Q 041300 698 HSFLVYEFLERG-SLAAIL 715 (716)
Q Consensus 698 ~~~lv~Ey~~~G-sL~~~l 715 (716)
..++||||+.+| +|.+++
T Consensus 103 ~~~lv~e~~~~g~~l~~~~ 121 (335)
T 3dls_A 103 FFQLVMEKHGSGLDLFAFI 121 (335)
T ss_dssp EEEEEEECCTTSCBHHHHH
T ss_pred EEEEEEEeCCCCccHHHHH
Confidence 999999999887 998875
No 338
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=98.96 E-value=4.7e-10 Score=114.70 Aligned_cols=92 Identities=20% Similarity=0.258 Sum_probs=71.6
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe--CCee
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--AQHS 699 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~--~~~~ 699 (716)
.++|...+.||+|+||.||++.. .+++.||||++..............+.+|++++++++||||+++++++.. .+..
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 35789999999999999999975 46889999999753211111234679999999999999999999999853 4578
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++||||+++| |.+++
T Consensus 84 ~lv~e~~~~~-l~~~~ 98 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEML 98 (305)
T ss_dssp EEEEECCSEE-HHHHH
T ss_pred EEEehhccCC-HHHHH
Confidence 9999999987 55543
No 339
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=98.96 E-value=6.6e-10 Score=114.82 Aligned_cols=88 Identities=23% Similarity=0.472 Sum_probs=68.5
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCC----EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH 698 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~----~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~ 698 (716)
.+|...++||+|+||.||+|... +++ .||+|.+..... ....++|.+|++++++++|||||+++++|..++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~- 90 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS---PKANKEILDEAYVMASVDNPHVCRLLGICLTST- 90 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC----------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccC---HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-
Confidence 46888999999999999999753 444 468888764321 124568999999999999999999999998754
Q ss_pred eeEEEcccCCCCHHhHh
Q 041300 699 SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 ~~lv~Ey~~~GsL~~~l 715 (716)
.++|+||+++|+|.+++
T Consensus 91 ~~~v~e~~~~g~L~~~l 107 (327)
T 3poz_A 91 VQLITQLMPFGCLLDYV 107 (327)
T ss_dssp EEEEEECCTTCBHHHHH
T ss_pred eEEEEEecCCCcHHHHH
Confidence 78999999999999876
No 340
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=98.96 E-value=5.7e-10 Score=115.32 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=75.1
Q ss_pred cCCccc-ccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300 624 NDFDAE-YCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 624 ~~~~~~-~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~ 700 (716)
+.|... +.||+|+||.||+|... +++.||||++....... ....++.+|+.++..+ +||||+++++++...+..+
T Consensus 28 ~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~ 105 (327)
T 3lm5_A 28 NFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQ--DCRAEILHEIAVLELAKSCPRVINLHEVYENTSEII 105 (327)
T ss_dssp HHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTE--ECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred hEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcch--HHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEE
Confidence 345554 78999999999999654 68999999997643222 1356799999999999 5699999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++|+|.+++
T Consensus 106 lv~e~~~~~~L~~~~ 120 (327)
T 3lm5_A 106 LILEYAAGGEIFSLC 120 (327)
T ss_dssp EEEECCTTEEGGGGG
T ss_pred EEEEecCCCcHHHHH
Confidence 999999999999876
No 341
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=98.95 E-value=5.4e-11 Score=123.60 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=69.2
Q ss_pred cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCc----cchhhHHHHHHHHHHHhcCC---------CCCccccc
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPC----DQIADQKEFLTEVQALTEIR---------HRNIVKFY 690 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~----~~~~~~~~~~~ei~~l~~l~---------H~niv~l~ 690 (716)
.+|...+.||+|+||+||+|+. +|+.||||++...... ......+.+.+|++++++++ |||+|++.
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~ 98 (336)
T 2vuw_A 20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN 98 (336)
T ss_dssp HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence 4688889999999999999987 6899999999764321 01113467899999988886 77777666
Q ss_pred eEEE-----------------e-------------CCeeeEEEcccCCCCHHhHh
Q 041300 691 GFCS-----------------H-------------AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 691 g~~~-----------------~-------------~~~~~lv~Ey~~~GsL~~~l 715 (716)
+.+. + .+..|+|||||++|++.+.+
T Consensus 99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~ 153 (336)
T 2vuw_A 99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQM 153 (336)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGG
T ss_pred ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHH
Confidence 6543 2 57889999999999766544
No 342
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=98.95 E-value=7.1e-10 Score=116.31 Aligned_cols=95 Identities=25% Similarity=0.276 Sum_probs=79.4
Q ss_pred hHHHHHHhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-----CCCccc
Q 041300 615 VYDEIVRETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-----HRNIVK 688 (716)
Q Consensus 615 ~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-----H~niv~ 688 (716)
++.+.....+.|...++||+|+||.||+|.. .+++.||||++... ....+.+.+|++++.+++ |||||+
T Consensus 26 ~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~~~e~~~l~~l~~~~~~h~~iv~ 100 (360)
T 3llt_A 26 SWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-----KKYTRSAKIEADILKKIQNDDINNNNIVK 100 (360)
T ss_dssp CCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-----HHHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred eeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-----hhhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence 3444445567899999999999999999975 46889999998642 113466888999999986 999999
Q ss_pred cceEEEeCCeeeEEEcccCCCCHHhHh
Q 041300 689 FYGFCSHAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 689 l~g~~~~~~~~~lv~Ey~~~GsL~~~l 715 (716)
+++++...+..++||||+ +|+|.+++
T Consensus 101 ~~~~~~~~~~~~lv~e~~-~~~L~~~~ 126 (360)
T 3llt_A 101 YHGKFMYYDHMCLIFEPL-GPSLYEII 126 (360)
T ss_dssp EEEEEEETTEEEEEECCC-CCBHHHHH
T ss_pred ccceeeECCeeEEEEcCC-CCCHHHHH
Confidence 999999999999999999 99999876
No 343
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=98.95 E-value=2.9e-10 Score=120.06 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=71.3
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHH---HHHhcCCCCCccccc-------e
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEV---QALTEIRHRNIVKFY-------G 691 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei---~~l~~l~H~niv~l~-------g 691 (716)
.+.|...+.||+|+||+||+|.. .+|+.||||++......... ..+.|.+|+ +.+++++|||||+++ +
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~-~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~ 150 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSN-AIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD 150 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTT-HHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchH-HHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhh
Confidence 45688889999999999999985 46899999999753222222 457799999 566677899999999 6
Q ss_pred EEEeCCe-----------------eeEEEcccCCCCHHhHh
Q 041300 692 FCSHAQH-----------------SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 692 ~~~~~~~-----------------~~lv~Ey~~~GsL~~~l 715 (716)
++..++. .|+||||| +|+|.+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l 190 (377)
T 3byv_A 151 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFG 190 (377)
T ss_dssp EEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHH
T ss_pred hhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHH
Confidence 6665532 78999999 68999886
No 344
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=98.95 E-value=4e-10 Score=119.25 Aligned_cols=86 Identities=20% Similarity=0.338 Sum_probs=67.6
Q ss_pred HhhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC---
Q 041300 621 RETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA--- 696 (716)
Q Consensus 621 ~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~--- 696 (716)
....+|...+.||+|+||.||+|. ..+++.||||++.... ....+|+++++.++|||||++++++...
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~--------~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 75 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP--------RYKNRELDIMKVLDHVNIIKLVDYFYTTGDE 75 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT--------TSCCHHHHHHTTCCCTTBCCEEEEEEEC---
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc--------chHHHHHHHHHHcCCCCccchhheeeecCcc
Confidence 445689999999999999999996 4578999999986532 1234799999999999999999998543
Q ss_pred -----------------------------------CeeeEEEcccCCCCHHhHh
Q 041300 697 -----------------------------------QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 -----------------------------------~~~~lv~Ey~~~GsL~~~l 715 (716)
...++|||||+ |+|.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l 128 (383)
T 3eb0_A 76 EPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVL 128 (383)
T ss_dssp ----------------------------------CCEEEEEECCCS-EEHHHHH
T ss_pred cccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHH
Confidence 23789999999 4776654
No 345
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=98.95 E-value=6.1e-10 Score=112.95 Aligned_cols=90 Identities=31% Similarity=0.493 Sum_probs=66.1
Q ss_pred cCCcccccccCCCceEEEEEEcC--CCC--EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP--SGE--VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS 699 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~--~~~--~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~ 699 (716)
.+|...+.||+|+||.||+|.+. ++. .||||++........ ...+.|.+|++++.+++||||+++++++..++ .
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQP-EAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------C-HHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCH-HHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 46888999999999999999753 333 689999875432222 24567999999999999999999999997654 8
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++||||+++|+|.+++
T Consensus 96 ~~v~e~~~~~~L~~~l 111 (291)
T 1u46_A 96 KMVTELAPLGSLLDRL 111 (291)
T ss_dssp EEEEECCTTCBHHHHH
T ss_pred eeeEecccCCCHHHHH
Confidence 9999999999999876
No 346
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=98.94 E-value=2.7e-10 Score=117.65 Aligned_cols=88 Identities=23% Similarity=0.359 Sum_probs=71.3
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
++|...+.||+|+||.||+|... +++.||||++....... ....+.+|++++++++|||||++++++..++..++|
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 78 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEG---APCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLV 78 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC---------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccc---cchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEE
Confidence 46788899999999999999754 68899999986532111 112466899999999999999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
|||++ |+|.+++
T Consensus 79 ~e~~~-~~l~~~~ 90 (324)
T 3mtl_A 79 FEYLD-KDLKQYL 90 (324)
T ss_dssp EECCS-EEHHHHH
T ss_pred ecccc-cCHHHHH
Confidence 99998 5887765
No 347
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=98.94 E-value=7.5e-10 Score=116.31 Aligned_cols=90 Identities=22% Similarity=0.351 Sum_probs=68.3
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ---- 697 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~---- 697 (716)
...|...+.||+|+||.||+|.. .+|+.||||++.... ......+.+.+|++++++++|||||++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~ 101 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF--QSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDD 101 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTT--SSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTT
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccc--cCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCcccc
Confidence 35688899999999999999964 468999999996532 12224567899999999999999999999997653
Q ss_pred --eeeEEEcccCCCCHHhHh
Q 041300 698 --HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 --~~~lv~Ey~~~GsL~~~l 715 (716)
..|+||||| +++|.+++
T Consensus 102 ~~~~~lv~e~~-~~~L~~~~ 120 (367)
T 1cm8_A 102 FTDFYLVMPFM-GTDLGKLM 120 (367)
T ss_dssp CCCCEEEEECC-SEEHHHHH
T ss_pred CceEEEEEecC-CCCHHHHH
Confidence 459999999 78998875
No 348
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=4.6e-10 Score=128.04 Aligned_cols=89 Identities=28% Similarity=0.459 Sum_probs=73.4
Q ss_pred cCCcccccccCCCceEEEEEEcC--CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe---
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP--SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH--- 698 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~--~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~--- 698 (716)
+.|...++||+|+||.||+|... +++.||||++.... .......|.+|++++.+++|||||++++++...+.
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~ 156 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG---DAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGD 156 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC---CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSC
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC---CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCC
Confidence 57889999999999999999754 58899999986532 12245678999999999999999999999987665
Q ss_pred --eeEEEcccCCCCHHhHh
Q 041300 699 --SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 --~~lv~Ey~~~GsL~~~l 715 (716)
.|+|||||++|+|.+++
T Consensus 157 ~~~~lv~E~~~g~~L~~~~ 175 (681)
T 2pzi_A 157 PVGYIVMEYVGGQSLKRSK 175 (681)
T ss_dssp EEEEEEEECCCCEECC---
T ss_pred ceeEEEEEeCCCCcHHHHH
Confidence 69999999999998765
No 349
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=1.3e-09 Score=113.21 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=44.6
Q ss_pred CCCCCEEEccCCcCCccCchhhc---CcCCCCEEECcCCcCccc----CChhhhCCCCCCEEECCCCcCccccchhccC-
Q 041300 404 LIELEYLDFSANKFNNSVPESLG---NLLKLHYLGLSNNQFVLE----LPKELEKLVQLSELDASHNLFGGEIPFQICS- 475 (716)
Q Consensus 404 l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~- 475 (716)
+++|++|+|.+|.+.+..+..+. .+++|++|+|+.|.+... ++..+..+++|+.|++++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45666666666665533222222 355666777766666542 2223344566777777777665443333332
Q ss_pred CCCCCEEECcCCc
Q 041300 476 LKSLEKLNLSHNN 488 (716)
Q Consensus 476 l~~L~~L~ls~N~ 488 (716)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456777665
No 350
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=98.92 E-value=1.3e-09 Score=112.14 Aligned_cols=87 Identities=29% Similarity=0.450 Sum_probs=67.7
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEE--------
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCS-------- 694 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~-------- 694 (716)
..|...+.||+|+||.||+|... +++.||||++... . ....+++.+|++++++++|||||++++++.
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 86 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT---D-PQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTD 86 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC---S-HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC
T ss_pred CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC---C-hHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccc
Confidence 46888899999999999999765 4889999998753 1 224567999999999999999999999873
Q ss_pred ------eCCeeeEEEcccCCCCHHhHh
Q 041300 695 ------HAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 695 ------~~~~~~lv~Ey~~~GsL~~~l 715 (716)
+.+..++||||++ |+|.+++
T Consensus 87 ~~~~~~~~~~~~lv~e~~~-~~L~~~~ 112 (320)
T 2i6l_A 87 DVGSLTELNSVYIVQEYME-TDLANVL 112 (320)
T ss_dssp ----CCSCSEEEEEEECCS-EEHHHHH
T ss_pred ccccccccCceeEEeeccC-CCHHHHh
Confidence 3467899999998 6998876
No 351
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=98.92 E-value=1.2e-09 Score=116.00 Aligned_cols=82 Identities=21% Similarity=0.267 Sum_probs=67.2
Q ss_pred CCccc-ccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHh-cCCCCCccccceEEEe----CC
Q 041300 625 DFDAE-YCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALT-EIRHRNIVKFYGFCSH----AQ 697 (716)
Q Consensus 625 ~~~~~-~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~-~l~H~niv~l~g~~~~----~~ 697 (716)
+|... ++||+|+||+||++.. .+++.||||++... ..+.+|++++. ..+|||||++++++.. .+
T Consensus 62 ~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~---------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~ 132 (400)
T 1nxk_A 62 DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC---------PKARREVELHWRASQCPHIVRIVDVYENLYAGRK 132 (400)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS---------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred cceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc---------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCc
Confidence 45554 6899999999999964 46889999998641 34678888874 4589999999999876 55
Q ss_pred eeeEEEcccCCCCHHhHh
Q 041300 698 HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 ~~~lv~Ey~~~GsL~~~l 715 (716)
..|+|||||++|+|.+++
T Consensus 133 ~~~lv~E~~~gg~L~~~l 150 (400)
T 1nxk_A 133 CLLIVMECLDGGELFSRI 150 (400)
T ss_dssp EEEEEEECCCSEEHHHHH
T ss_pred EEEEEEEeCCCCcHHHHH
Confidence 689999999999999886
No 352
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=98.91 E-value=9.9e-10 Score=118.13 Aligned_cols=90 Identities=23% Similarity=0.431 Sum_probs=74.8
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA----- 696 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~----- 696 (716)
.++|...++||+|+||.||+|.. .+++.||||++.... ......+.+.+|++++++++|||||++++++...
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 102 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF--EDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKF 102 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTT--TSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchh--cChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcC
Confidence 35789999999999999999964 468899999997532 2222456799999999999999999999999776
Q ss_pred CeeeEEEcccCCCCHHhHh
Q 041300 697 QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 ~~~~lv~Ey~~~GsL~~~l 715 (716)
+..|+|||||+ |+|.+++
T Consensus 103 ~~~~lv~e~~~-~~L~~~~ 120 (432)
T 3n9x_A 103 DELYIVLEIAD-SDLKKLF 120 (432)
T ss_dssp CCEEEEEECCS-EEHHHHH
T ss_pred CeEEEEEecCC-cCHHHHH
Confidence 56899999997 5898875
No 353
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=98.91 E-value=1.8e-09 Score=112.26 Aligned_cols=89 Identities=24% Similarity=0.475 Sum_probs=72.8
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHH-HhcCCCCCccccceEEEeCCeee
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA-LTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~-l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
..+|...+.||+|+||.||+|.. .+|+.||||++..... .. ...++..|+.+ ++.++|||||++++++..++..+
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~-~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~ 126 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN--SQ-EQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVW 126 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCC--CH-HHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEE
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccC--cH-HHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEE
Confidence 45788889999999999999974 5789999999976422 11 34556667666 78889999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+||||+++ +|.+++
T Consensus 127 lv~e~~~~-~L~~~l 140 (340)
T 3an0_A 127 ICMELMDT-SLDKFY 140 (340)
T ss_dssp EEECCCSE-EHHHHH
T ss_pred EEHHHhhC-cHHHHH
Confidence 99999985 888765
No 354
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=98.91 E-value=1.6e-09 Score=122.34 Aligned_cols=89 Identities=25% Similarity=0.434 Sum_probs=73.7
Q ss_pred hcCCcccccccCCCceEEEEEEcCC----CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPS----GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH 698 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~----~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~ 698 (716)
...|...+.||+|+||.||+|.... +..||||++.... .....+.|.+|+.++++++|||||+++|++. .+.
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~ 464 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENP 464 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSS
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCc
Confidence 4568888999999999999997632 4579999986532 1224567999999999999999999999984 566
Q ss_pred eeEEEcccCCCCHHhHh
Q 041300 699 SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 ~~lv~Ey~~~GsL~~~l 715 (716)
.++|||||++|+|.+++
T Consensus 465 ~~lv~E~~~~g~L~~~l 481 (656)
T 2j0j_A 465 VWIIMELCTLGELRSFL 481 (656)
T ss_dssp CEEEEECCTTCBHHHHH
T ss_pred eEEEEEcCCCCcHHHHH
Confidence 89999999999999886
No 355
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=98.91 E-value=2e-09 Score=109.70 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=69.0
Q ss_pred cCCccc-ccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHH-hcCCCCCccccceEEEe----C
Q 041300 624 NDFDAE-YCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQAL-TEIRHRNIVKFYGFCSH----A 696 (716)
Q Consensus 624 ~~~~~~-~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l-~~l~H~niv~l~g~~~~----~ 696 (716)
++|... ++||+|+||.||++.. .+++.||||+++.. ..+.+|++++ +..+||||+++++++.. .
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~ 87 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC---------PKARREVELHWRASQCPHIVRIVDVYENLYAGR 87 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS---------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc---------HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCC
Confidence 345554 7899999999999964 56899999998641 3577888887 66699999999999977 6
Q ss_pred CeeeEEEcccCCCCHHhHh
Q 041300 697 QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 ~~~~lv~Ey~~~GsL~~~l 715 (716)
...++||||+++|+|.+++
T Consensus 88 ~~~~lv~e~~~~~~L~~~l 106 (299)
T 3m2w_A 88 KCLLIVMECLDGGELFSRI 106 (299)
T ss_dssp EEEEEEECCCCSCBHHHHH
T ss_pred ceEEEEEeecCCCcHHHHH
Confidence 6789999999999999876
No 356
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=98.91 E-value=7.4e-10 Score=114.37 Aligned_cols=88 Identities=23% Similarity=0.379 Sum_probs=70.4
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCC----EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH 698 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~----~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~ 698 (716)
.+|...++||+|+||+||+|... ++. .||+|.+....... ..+.+.+|+.++++++|||||+++++|. .+.
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~---~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~ 88 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQ---SFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSS 88 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCS---CBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSS
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHH---HHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCc
Confidence 46888899999999999999753 444 38888875432111 2245788999999999999999999985 566
Q ss_pred eeEEEcccCCCCHHhHh
Q 041300 699 SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 ~~lv~Ey~~~GsL~~~l 715 (716)
.++||||+++|+|.+++
T Consensus 89 ~~~v~e~~~~~~L~~~l 105 (325)
T 3kex_A 89 LQLVTQYLPLGSLLDHV 105 (325)
T ss_dssp EEEEEECCTTCBSHHHH
T ss_pred cEEEEEeCCCCCHHHHH
Confidence 89999999999999876
No 357
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=98.91 E-value=1.5e-09 Score=115.01 Aligned_cols=90 Identities=29% Similarity=0.533 Sum_probs=66.5
Q ss_pred hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCC--e
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQ--H 698 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~--~ 698 (716)
..+|...+.||+|+||.||+|. ..+++.||||++.... ......+.+.+|+.++.++. |||||++++++...+ .
T Consensus 8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~--~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~ 85 (388)
T 3oz6_A 8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAF--QNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD 85 (388)
T ss_dssp HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC----CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccc--cChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence 4678999999999999999996 4568999999986532 22224567889999999997 999999999998654 6
Q ss_pred eeEEEcccCCCCHHhHh
Q 041300 699 SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 ~~lv~Ey~~~GsL~~~l 715 (716)
.|+|||||+ |+|.+++
T Consensus 86 ~~lv~e~~~-~~L~~~~ 101 (388)
T 3oz6_A 86 VYLVFDYME-TDLHAVI 101 (388)
T ss_dssp EEEEEECCS-EEHHHHH
T ss_pred EEEEecccC-cCHHHHH
Confidence 799999998 5888765
No 358
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=98.90 E-value=9.6e-10 Score=119.33 Aligned_cols=89 Identities=24% Similarity=0.408 Sum_probs=64.6
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----C
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA-----Q 697 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~-----~ 697 (716)
+.|...++||+|+||+||+|.. .+++.||||++.... ......+.+.+|++++++++|||||++++++... .
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 130 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVF--EDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFD 130 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhh--cCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCc
Confidence 5788999999999999999964 468999999996532 2222456799999999999999999999999543 4
Q ss_pred eeeEEEcccCCCCHHhHh
Q 041300 698 HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 ~~~lv~Ey~~~GsL~~~l 715 (716)
..|+|||||. |+|.+++
T Consensus 131 ~~~lv~e~~~-~~L~~~~ 147 (458)
T 3rp9_A 131 ELYVVLEIAD-SDFKKLF 147 (458)
T ss_dssp CEEEEECCCS-EEHHHHH
T ss_pred eEEEEEeccc-cchhhhc
Confidence 6899999985 6888765
No 359
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=98.90 E-value=1.1e-09 Score=114.22 Aligned_cols=92 Identities=25% Similarity=0.459 Sum_probs=69.6
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccch-hhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQI-ADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~-~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
...|...+.||+|+||.||+|... +|+.||||++......... ...+.+.+|++++++++|||||++++++...+..+
T Consensus 9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 88 (346)
T 1ua2_A 9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS 88 (346)
T ss_dssp ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE
T ss_pred hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceE
Confidence 467889999999999999999764 5899999999753221111 01246889999999999999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++ +|.+++
T Consensus 89 lv~e~~~~-~l~~~~ 102 (346)
T 1ua2_A 89 LVFDFMET-DLEVII 102 (346)
T ss_dssp EEEECCSE-EHHHHH
T ss_pred EEEEcCCC-CHHHHH
Confidence 99999996 787765
No 360
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=98.90 E-value=3.8e-10 Score=116.16 Aligned_cols=92 Identities=24% Similarity=0.393 Sum_probs=76.6
Q ss_pred HhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeee
Q 041300 621 RETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 621 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~ 700 (716)
....+|...+.||+|+||.||+|.... .||||++........ ..+.|.+|++++++++||||+++++++..++..+
T Consensus 30 i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~--~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~ 105 (319)
T 2y4i_B 30 IPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNED--QLKAFKREVMAYRQTRHENVVLFMGACMSPPHLA 105 (319)
T ss_dssp SCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCC--CCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEE
T ss_pred CCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHH--HHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceE
Confidence 345678899999999999999998643 499999875432111 2345888999999999999999999999999999
Q ss_pred EEEcccCCCCHHhHhC
Q 041300 701 LVYEFLERGSLAAILS 716 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l~ 716 (716)
+||||+++|+|.++++
T Consensus 106 iv~e~~~~~~L~~~l~ 121 (319)
T 2y4i_B 106 IITSLCKGRTLYSVVR 121 (319)
T ss_dssp EECBCCCSEEHHHHTT
T ss_pred EEeecccCCcHHHHHH
Confidence 9999999999999873
No 361
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.90 E-value=6.8e-10 Score=125.85 Aligned_cols=92 Identities=20% Similarity=0.311 Sum_probs=76.7
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeee
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~ 700 (716)
..+|...++||+|+||+||+|+.. +++.||||++.+...... ...+.+.+|..++..+ +||+|+++++++.+.+..|
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~-~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQD-DDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHT-TTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccH-HHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 467999999999999999999754 588999999975321111 1345688899999988 7999999999999999999
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+|||||++|+|.+++
T Consensus 419 lV~E~~~gg~L~~~l 433 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHI 433 (674)
T ss_dssp EEEECCCSCBHHHHH
T ss_pred EEEeCcCCCcHHHHH
Confidence 999999999999876
No 362
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=98.90 E-value=1.3e-09 Score=118.20 Aligned_cols=89 Identities=21% Similarity=0.360 Sum_probs=72.0
Q ss_pred hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ---- 697 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~---- 697 (716)
.+.|...+.||+|+||+||+|. ..+++.||||++.... ......+.+.+|+++++.++|||||++++++...+
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~ 138 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF--QNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEE 138 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGG--GSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTT
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccc--cChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCcccc
Confidence 4578899999999999999995 4468899999997532 12224567899999999999999999999996543
Q ss_pred --eeeEEEcccCCCCHHhH
Q 041300 698 --HSFLVYEFLERGSLAAI 714 (716)
Q Consensus 698 --~~~lv~Ey~~~GsL~~~ 714 (716)
..|+|||||+++ |.+.
T Consensus 139 ~~~~~lv~E~~~~~-l~~~ 156 (464)
T 3ttj_A 139 FQDVYLVMELMDAN-LCQV 156 (464)
T ss_dssp CCEEEEEEECCSEE-HHHH
T ss_pred CCeEEEEEeCCCCC-HHHH
Confidence 569999999875 5544
No 363
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=98.90 E-value=1.7e-09 Score=109.49 Aligned_cols=90 Identities=20% Similarity=0.402 Sum_probs=69.8
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
.++|...+.||+|+||.||+|.. .+++.||||++..... .....+.+..+...++.++||||+++++++.+++..++
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~l 83 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN--SQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWI 83 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---C--HHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccC--cHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEE
Confidence 35788899999999999999975 5788999999975321 11122334455556888999999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+++ +|.+++
T Consensus 84 v~e~~~~-~l~~~l 96 (290)
T 3fme_A 84 CMELMDT-SLDKFY 96 (290)
T ss_dssp EEECCSE-EHHHHH
T ss_pred EEehhcc-chHHHH
Confidence 9999984 887664
No 364
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=98.89 E-value=1.6e-09 Score=116.49 Aligned_cols=83 Identities=24% Similarity=0.308 Sum_probs=69.9
Q ss_pred CCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEEE
Q 041300 625 DFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLVY 703 (716)
Q Consensus 625 ~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv~ 703 (716)
.|...++||+|+||+||.+...+|+.||||++... ..+.+.+|++++.++ +|||||++++++.+++..|+||
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~-------~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~ 88 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID-------FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIAL 88 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG-------GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH-------HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEE
Confidence 34556889999999997765567999999998642 235678999999876 8999999999999999999999
Q ss_pred cccCCCCHHhHh
Q 041300 704 EFLERGSLAAIL 715 (716)
Q Consensus 704 Ey~~~GsL~~~l 715 (716)
|||+ |+|.+++
T Consensus 89 E~~~-gsL~~~l 99 (434)
T 2rio_A 89 ELCN-LNLQDLV 99 (434)
T ss_dssp CCCS-EEHHHHH
T ss_pred ecCC-CCHHHHH
Confidence 9996 6999876
No 365
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=98.89 E-value=2.1e-09 Score=112.26 Aligned_cols=89 Identities=28% Similarity=0.488 Sum_probs=72.3
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC------
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA------ 696 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~------ 696 (716)
.+|...+.||+|+||.||+|.. .+++.||||++........ ....+.+|++++++++|||||++++++...
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 94 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEG--FPITALREIKILQLLKHENVVNLIEICRTKASPYNR 94 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSS--SCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEeccccccc--chHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence 5788999999999999999975 5689999999865432221 245688999999999999999999999773
Q ss_pred --CeeeEEEcccCCCCHHhHh
Q 041300 697 --QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 --~~~~lv~Ey~~~GsL~~~l 715 (716)
+..++|||||++ +|.+.+
T Consensus 95 ~~~~~~lv~e~~~~-~l~~~l 114 (351)
T 3mi9_A 95 CKGSIYLVFDFCEH-DLAGLL 114 (351)
T ss_dssp --CEEEEEEECCSE-EHHHHH
T ss_pred CCceEEEEEeccCC-CHHHHH
Confidence 467999999986 665543
No 366
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=98.88 E-value=2e-09 Score=113.30 Aligned_cols=90 Identities=20% Similarity=0.338 Sum_probs=73.3
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ---- 697 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~---- 697 (716)
..+|...+.||+|+||.||+|.. .+++.||||++..... .....+.+.+|+.+++.++|||||++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~ 101 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ--NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEE 101 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTT
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccC--ChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccc
Confidence 35788999999999999999964 4688999999975321 1224567899999999999999999999997654
Q ss_pred --eeeEEEcccCCCCHHhHh
Q 041300 698 --HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 --~~~lv~Ey~~~GsL~~~l 715 (716)
..++|||||++ +|.+++
T Consensus 102 ~~~~~lv~e~~~~-~l~~~~ 120 (371)
T 2xrw_A 102 FQDVYIVMELMDA-NLCQVI 120 (371)
T ss_dssp CCEEEEEEECCSE-EHHHHH
T ss_pred ccceEEEEEcCCC-CHHHHH
Confidence 67999999985 676654
No 367
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=1.4e-09 Score=112.84 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=84.7
Q ss_pred ccCCCCCCEEEccCCccccccCcccCCCCCCcEEEccCCcccccCCcccC--CCCCCCEEEccC--CcCCcc-----Cch
Q 041300 353 IGNMSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQLTGRLPTEIG--SLIELEYLDFSA--NKFNNS-----VPE 423 (716)
Q Consensus 353 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~--N~l~~~-----~~~ 423 (716)
+..+++|+.|++++|.-. .++. + .+++|+.|++..+.++......+. .+++|+.|+|+. |...+. +..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 344455555555544211 1121 2 245566666655554422222222 455666666542 111110 011
Q ss_pred hh--cCcCCCCEEECcCCcCcccCChhhh---CCCCCCEEECCCCcCcccc----chhccCCCCCCEEECcCCcCcccCC
Q 041300 424 SL--GNLLKLHYLGLSNNQFVLELPKELE---KLVQLSELDASHNLFGGEI----PFQICSLKSLEKLNLSHNNLSGLIP 494 (716)
Q Consensus 424 ~~--~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~ls~N~l~~~~----p~~~~~l~~L~~L~ls~N~l~~~~~ 494 (716)
.+ ..+++|+.|+|++|.+....+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.|+...-
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 12 2467899999988888754333332 4678999999999887643 3333456889999999998874432
Q ss_pred cCCcC-CCCCCEEEccCCc
Q 041300 495 NCFEG-MHGLSIIDISDNQ 512 (716)
Q Consensus 495 ~~~~~-~~~L~~l~ls~N~ 512 (716)
..+.. + ...+++++|+
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 33332 2 3567888777
No 368
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=98.87 E-value=3.7e-09 Score=109.66 Aligned_cols=85 Identities=29% Similarity=0.450 Sum_probs=67.5
Q ss_pred hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHH--HhcCCCCCccccceEEEeC----
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQA--LTEIRHRNIVKFYGFCSHA---- 696 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~--l~~l~H~niv~l~g~~~~~---- 696 (716)
.++|...+.||+|+||.||+|+. +++.||||++... ....+..|.++ +..++||||+++++++...
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~ 83 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA-------NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADG 83 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG-------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTS
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc-------chhhHHHHHHHHHHHhccCcchhhheecccccccCC
Confidence 35788899999999999999976 6789999998642 23445555555 4458999999999876542
Q ss_pred -CeeeEEEcccCCCCHHhHh
Q 041300 697 -QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 -~~~~lv~Ey~~~GsL~~~l 715 (716)
...++|||||++|+|.+++
T Consensus 84 ~~~~~lv~e~~~~g~L~~~l 103 (336)
T 3g2f_A 84 RMEYLLVMEYYPNGSLXKYL 103 (336)
T ss_dssp CEEEEEEECCCTTCBHHHHH
T ss_pred CceEEEEEecCCCCcHHHHH
Confidence 2568999999999999886
No 369
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=98.87 E-value=3.3e-09 Score=109.48 Aligned_cols=88 Identities=23% Similarity=0.470 Sum_probs=72.0
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCC----EEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGE----VVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH 698 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~----~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~ 698 (716)
.+|...++||+|+||.||+|... +++ .||+|.+...... ...+++.+|+.++++++|||||++++++..+.
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~- 90 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSP---KANKEILDEAYVMASVDNPHVCRLLGICLTST- 90 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSC---CCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCH---HHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-
Confidence 56888999999999999999743 444 4678877643221 14578999999999999999999999998654
Q ss_pred eeEEEcccCCCCHHhHh
Q 041300 699 SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 ~~lv~Ey~~~GsL~~~l 715 (716)
.++|+||+++|+|.+++
T Consensus 91 ~~~v~~~~~~g~L~~~l 107 (327)
T 3lzb_A 91 VQLITQLMPFGCLLDYV 107 (327)
T ss_dssp EEEEECCCSSCBHHHHH
T ss_pred ceEEEEecCCCcHHHHH
Confidence 78999999999999876
No 370
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=98.87 E-value=2.4e-09 Score=111.87 Aligned_cols=89 Identities=24% Similarity=0.439 Sum_probs=73.6
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA----- 696 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~----- 696 (716)
.++|...+.||+|+||.||+|... +|+.||||++.... .......+.+|++++++++|||||++++++...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 86 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFD---KPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENF 86 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCS---SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTC
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccc---cchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCcc
Confidence 457889999999999999999754 68899999996532 222456788999999999999999999998764
Q ss_pred CeeeEEEcccCCCCHHhHh
Q 041300 697 QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 ~~~~lv~Ey~~~GsL~~~l 715 (716)
...++||||++ |+|.+++
T Consensus 87 ~~~~lv~e~~~-~~L~~~~ 104 (353)
T 2b9h_A 87 NEVYIIQELMQ-TDLHRVI 104 (353)
T ss_dssp CCEEEEECCCS-EEHHHHH
T ss_pred ceEEEEEeccC-ccHHHHH
Confidence 56899999998 5888765
No 371
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=98.86 E-value=2.5e-09 Score=112.52 Aligned_cols=90 Identities=27% Similarity=0.392 Sum_probs=74.0
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCee--
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHS-- 699 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~-- 699 (716)
...|...+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|++++++++|||||++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 118 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ--SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRN 118 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTS--SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTT
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEeccccc--chhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCccc
Confidence 35788899999999999999964 4688999999975322 222456789999999999999999999999877654
Q ss_pred ----eEEEcccCCCCHHhHh
Q 041300 700 ----FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ----~lv~Ey~~~GsL~~~l 715 (716)
++||||++ |+|.+++
T Consensus 119 ~~~~~lv~e~~~-~~l~~~~ 137 (371)
T 4exu_A 119 FYDFYLVMPFMQ-TDLQKIM 137 (371)
T ss_dssp CCCCEEEEECCC-EEHHHHT
T ss_pred ceeEEEEEcccc-ccHHHHh
Confidence 99999998 5887764
No 372
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=98.86 E-value=5.5e-10 Score=124.20 Aligned_cols=89 Identities=25% Similarity=0.410 Sum_probs=73.4
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe------C
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH------A 696 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~------~ 696 (716)
+.|...+.||+|+||.||+|.. .+|+.||||++.... .....+.|.+|++++.+++|||||++++++.. .
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~---~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~ 90 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL---SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPN 90 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC---CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTT
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC---CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCC
Confidence 5799999999999999999965 468899999987532 12245679999999999999999999998755 5
Q ss_pred CeeeEEEcccCCCCHHhHh
Q 041300 697 QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 ~~~~lv~Ey~~~GsL~~~l 715 (716)
+..++|||||++|+|.+++
T Consensus 91 ~~~~LVmEy~~ggsL~~~L 109 (676)
T 3qa8_A 91 DLPLLAMEYCEGGDLRKYL 109 (676)
T ss_dssp SSCCCEEECCSSCBHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHH
Confidence 6779999999999999876
No 373
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=98.85 E-value=3.1e-09 Score=109.01 Aligned_cols=91 Identities=18% Similarity=0.272 Sum_probs=77.3
Q ss_pred hhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC--CCCccccceEEEeCCee
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR--HRNIVKFYGFCSHAQHS 699 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~--H~niv~l~g~~~~~~~~ 699 (716)
....|...+.||+|+||.||++...+++.||||++...... ....+.+.+|++++.+++ ||||+++++++..++..
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~ 103 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEAD--NQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYI 103 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCC--HHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEE
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEecccccc--ccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEE
Confidence 34578899999999999999998878999999999753321 224567999999999997 59999999999999999
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++||| +.+|+|.+++
T Consensus 104 ~lv~e-~~~~~L~~~l 118 (313)
T 3cek_A 104 YMVME-CGNIDLNSWL 118 (313)
T ss_dssp EEEEC-CCSEEHHHHH
T ss_pred EEEEe-cCCCcHHHHH
Confidence 99999 6788998876
No 374
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=98.85 E-value=3.5e-09 Score=111.12 Aligned_cols=89 Identities=24% Similarity=0.298 Sum_probs=73.3
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCC----
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQ---- 697 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~---- 697 (716)
...|...+.||+|+||.||+|.. .++..||||++.... .....+.+.+|++++.+++|||||++++++....
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 102 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE---HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQM 102 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT---CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTC
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc---CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCcccc
Confidence 35789999999999999999964 468899999997532 2224467999999999999999999999997653
Q ss_pred -eeeEEEcccCCCCHHhHh
Q 041300 698 -HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 -~~~lv~Ey~~~GsL~~~l 715 (716)
..|+||||++ |+|.+++
T Consensus 103 ~~~~iv~e~~~-~~L~~~l 120 (364)
T 3qyz_A 103 KDVYIVQDLME-TDLYKLL 120 (364)
T ss_dssp CCEEEEEECCS-EEHHHHH
T ss_pred ceEEEEEcccC-cCHHHHH
Confidence 5799999998 4888765
No 375
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=98.85 E-value=5e-09 Score=108.18 Aligned_cols=88 Identities=28% Similarity=0.504 Sum_probs=70.6
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHH-HHhcCCCCCccccceEEEeCCeeeE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQ-ALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~-~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
++|...+.||+|+||.||+|.. .+++.||||++.... .. ....++.+|+. +++.++|||||++++++..++..++
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~-~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~l 98 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTV--DE-KEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWI 98 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCC--CH-HHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEE
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeeccc--Cc-hHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEE
Confidence 5688889999999999999975 468899999997532 11 13455667766 7788899999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+++ +|.+++
T Consensus 99 v~e~~~~-~l~~~~ 111 (327)
T 3aln_A 99 CMELMST-SFDKFY 111 (327)
T ss_dssp EECCCSE-EHHHHH
T ss_pred EEeecCC-ChHHHH
Confidence 9999996 776654
No 376
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=98.85 E-value=1.8e-09 Score=113.26 Aligned_cols=90 Identities=26% Similarity=0.406 Sum_probs=67.8
Q ss_pred hcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC-----
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA----- 696 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~----- 696 (716)
...|...+.||+|+||.||+|. ..+|+.||||++.... ......+.+.+|++++++++|||||++++++...
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~ 105 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF--QSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEE 105 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTT--SSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGG
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccc--cCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCcccc
Confidence 3578899999999999999996 4568899999996532 1222456789999999999999999999999754
Q ss_pred -CeeeEEEcccCCCCHHhHh
Q 041300 697 -QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 -~~~~lv~Ey~~~GsL~~~l 715 (716)
...|+|+||+ +|+|.+++
T Consensus 106 ~~~~~lv~e~~-~~~L~~~~ 124 (367)
T 2fst_X 106 FNDVYLVTHLM-GADLNNIV 124 (367)
T ss_dssp CCCCEEEEECC-CEECC---
T ss_pred CCeEEEEeccc-CCCHHHHH
Confidence 4579999999 67887765
No 377
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=98.84 E-value=2.9e-09 Score=111.32 Aligned_cols=89 Identities=27% Similarity=0.394 Sum_probs=73.0
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe----
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH---- 698 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~---- 698 (716)
..|...+.||+|+||.||+|.. .+|+.||||++..... .....+.+.+|+.++++++|||||++++++...+.
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 101 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ--SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 101 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTS--SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEeccccc--chHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccc
Confidence 5688889999999999999964 4688999999975321 22235678999999999999999999999987654
Q ss_pred --eeEEEcccCCCCHHhHh
Q 041300 699 --SFLVYEFLERGSLAAIL 715 (716)
Q Consensus 699 --~~lv~Ey~~~GsL~~~l 715 (716)
.++||||++ |+|.+++
T Consensus 102 ~~~~lv~e~~~-~~l~~~~ 119 (353)
T 3coi_A 102 YDFYLVMPFMQ-TDLQKIM 119 (353)
T ss_dssp CCCEEEEECCS-EEGGGTT
T ss_pred eeEEEEecccc-CCHHHHh
Confidence 499999998 5887764
No 378
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=98.84 E-value=2.9e-09 Score=117.27 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=64.6
Q ss_pred cccccccCCCceEEEEEEcCCCCEEEEEEccccCCccch----hhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeEE
Q 041300 627 DAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQI----ADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 627 ~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~----~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~lv 702 (716)
...++||+|+||.||+|.+ .+..+|+|+.......... ...+.|.+|++++++++|||||++..++...+..|+|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 4467899999999999965 5678999987543222111 1234589999999999999999888888888889999
Q ss_pred EcccCCCCHHhHhC
Q 041300 703 YEFLERGSLAAILS 716 (716)
Q Consensus 703 ~Ey~~~GsL~~~l~ 716 (716)
||||++|+|.++++
T Consensus 418 mE~~~ggsL~~~l~ 431 (540)
T 3en9_A 418 MSYINGKLAKDVIE 431 (540)
T ss_dssp EECCCSEEHHHHST
T ss_pred EECCCCCCHHHHHH
Confidence 99999999999874
No 379
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.84 E-value=3.6e-09 Score=112.82 Aligned_cols=83 Identities=22% Similarity=0.391 Sum_probs=62.5
Q ss_pred Ccc-cccccCCCceEEEEEEcC---CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe--CCee
Q 041300 626 FDA-EYCIGNGGHGSVYRAELP---SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH--AQHS 699 (716)
Q Consensus 626 ~~~-~~~ig~g~~g~v~~~~~~---~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~--~~~~ 699 (716)
|.. .++||+|+||.||+|+.. ++..||||++.... ....+.+|++++++++|||||++++++.. ....
T Consensus 22 y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~------~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~ 95 (405)
T 3rgf_A 22 FEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG------ISMSACREIALLRELKHPNVISLQKVFLSHADRKV 95 (405)
T ss_dssp EECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS------CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEE
T ss_pred hhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC------CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeE
Confidence 443 457999999999999864 47789999997532 12468899999999999999999999965 5678
Q ss_pred eEEEcccCCCCHHhHh
Q 041300 700 FLVYEFLERGSLAAIL 715 (716)
Q Consensus 700 ~lv~Ey~~~GsL~~~l 715 (716)
++||||+++ +|.+++
T Consensus 96 ~lv~e~~~~-~l~~~~ 110 (405)
T 3rgf_A 96 WLLFDYAEH-DLWHII 110 (405)
T ss_dssp EEEEECCSE-EHHHHH
T ss_pred EEEEeCCCC-CHHHHH
Confidence 999999985 776654
No 380
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=98.83 E-value=6.2e-09 Score=105.82 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=73.9
Q ss_pred cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l 701 (716)
.+|...+.||+|+||.||+|. ..+++.||||++.... ..+.+.+|++++.++ +|++++++++++..+...++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~l 83 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS------DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL 83 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT------TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC------ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEE
Confidence 468889999999999999997 4578999999986532 123588899999999 89999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+ +|+|.+++
T Consensus 84 v~e~~-~~~L~~~l 96 (298)
T 1csn_A 84 VIDLL-GPSLEDLL 96 (298)
T ss_dssp EEECC-CCBHHHHH
T ss_pred EEEec-CCCHHHHH
Confidence 99999 99999886
No 381
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.82 E-value=2.1e-10 Score=112.76 Aligned_cols=21 Identities=14% Similarity=-0.108 Sum_probs=14.2
Q ss_pred CCcceeeeeeCCCC-CEEEEEc
Q 041300 38 SPCAWYGISCNDAG-RVTNISL 58 (716)
Q Consensus 38 ~~c~w~gv~c~~~~-~v~~l~l 58 (716)
+.|.|.|+.|+..| +|+.+..
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~ 97 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIIN 97 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEE
T ss_pred HHHhcCcEEECCCCCEEEEEEe
Confidence 45789999998654 5544443
No 382
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=98.81 E-value=2.3e-09 Score=110.67 Aligned_cols=91 Identities=24% Similarity=0.462 Sum_probs=70.7
Q ss_pred hhcCCcccccccCCCceEEEEEEc--CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC---CCCCccccceEEE--
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAEL--PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI---RHRNIVKFYGFCS-- 694 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l---~H~niv~l~g~~~-- 694 (716)
...+|...+.||+|+||.||+|.. .+++.||||++........ ....+.+|+++++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~--~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~ 86 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEG--MPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS 86 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTS--CBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCccccc--CCchhhHHHHHHHhhhccCCCCeEeeeeeeeec
Confidence 346799999999999999999975 4678999999875322111 123466777776665 8999999999997
Q ss_pred ---eCCeeeEEEcccCCCCHHhHh
Q 041300 695 ---HAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 695 ---~~~~~~lv~Ey~~~GsL~~~l 715 (716)
.....++||||++ |+|.+++
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~l 109 (326)
T 1blx_A 87 RTDRETKLTLVFEHVD-QDLTTYL 109 (326)
T ss_dssp ECSSEEEEEEEEECCS-CBHHHHH
T ss_pred ccCCCceEEEEEecCC-CCHHHHH
Confidence 4557899999998 6998875
No 383
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=98.81 E-value=1.7e-09 Score=116.01 Aligned_cols=85 Identities=21% Similarity=0.310 Sum_probs=70.3
Q ss_pred hcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~l 701 (716)
...|...++||+|+||+||.....+++.||||++..... ..+.+|+++++++ +|||||++++++.+.+..|+
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~-------~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~l 95 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF-------SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYI 95 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE-------EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEE
T ss_pred cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH-------HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEE
Confidence 346888899999999996655445789999999865211 2356899999999 89999999999999999999
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
|||||+ |+|.+++
T Consensus 96 v~E~~~-g~L~~~l 108 (432)
T 3p23_A 96 AIELCA-ATLQEYV 108 (432)
T ss_dssp EEECCS-EEHHHHH
T ss_pred EEECCC-CCHHHHH
Confidence 999997 5998876
No 384
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=98.80 E-value=5.7e-09 Score=108.16 Aligned_cols=84 Identities=21% Similarity=0.295 Sum_probs=65.1
Q ss_pred hcCCcc-cccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHH-HHHhcCCCCCccccceEEEe----
Q 041300 623 TNDFDA-EYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEV-QALTEIRHRNIVKFYGFCSH---- 695 (716)
Q Consensus 623 ~~~~~~-~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei-~~l~~l~H~niv~l~g~~~~---- 695 (716)
.++|.. .++||+|+||+||+|... +++.||||++... ....+|+ ..+..++||||+++++++..
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~ 97 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS---------PKARQEVDHHWQASGGPHIVCILDVYENMHHG 97 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS---------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc---------HHHHHHHHHHHHhcCCCChHHHHHHHhhccCC
Confidence 346777 457999999999999754 6899999998642 1122232 34667799999999999976
Q ss_pred CCeeeEEEcccCCCCHHhHh
Q 041300 696 AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 696 ~~~~~lv~Ey~~~GsL~~~l 715 (716)
....++|||||++|+|.+++
T Consensus 98 ~~~~~lv~e~~~gg~L~~~l 117 (336)
T 3fhr_A 98 KRCLLIIMECMEGGELFSRI 117 (336)
T ss_dssp EEEEEEEEECCTTEEHHHHH
T ss_pred CceEEEEEeccCCCCHHHHH
Confidence 44579999999999999886
No 385
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=98.79 E-value=4.6e-09 Score=108.86 Aligned_cols=87 Identities=26% Similarity=0.402 Sum_probs=71.4
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEe------
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSH------ 695 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~------ 695 (716)
..|...++||+|+||.||+|.. .+++.||||++... .....+.+.+|+.++.++. |||||++++++..
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~ 103 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN----EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESD 103 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES----SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTST
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC----chHHHHHHHHHHHHHHHhccCCChhhccccccccccccc
Confidence 4688899999999999999975 46899999998542 1224567899999999996 9999999999953
Q ss_pred --CCeeeEEEcccCCCCHHhHh
Q 041300 696 --AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 696 --~~~~~lv~Ey~~~GsL~~~l 715 (716)
....++||||+. |+|.+++
T Consensus 104 ~~~~~~~lv~e~~~-g~L~~~l 124 (337)
T 3ll6_A 104 TGQAEFLLLTELCK-GQLVEFL 124 (337)
T ss_dssp TSSEEEEEEEECCS-EEHHHHH
T ss_pred cCCceEEEEEEecC-CCHHHHH
Confidence 334799999996 7888875
No 386
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.79 E-value=4.9e-09 Score=107.22 Aligned_cols=92 Identities=27% Similarity=0.407 Sum_probs=69.7
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccc-hhhHHHHHHHHHHHhcCC---CCCccccceEEEeCC
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQ-IADQKEFLTEVQALTEIR---HRNIVKFYGFCSHAQ 697 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~-~~~~~~~~~ei~~l~~l~---H~niv~l~g~~~~~~ 697 (716)
.+.|...+.||+|+||+||+|.. .+++.||||++........ ......+.+|++++++++ |||||++++++....
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~ 87 (308)
T 3g33_A 8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR 87 (308)
T ss_dssp --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence 46799999999999999999974 4689999999864321111 011245677887777664 999999999998755
Q ss_pred -----eeeEEEcccCCCCHHhHh
Q 041300 698 -----HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 698 -----~~~lv~Ey~~~GsL~~~l 715 (716)
..++||||++ |+|.+++
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~~ 109 (308)
T 3g33_A 88 TDREIKVTLVFEHVD-QDLRTYL 109 (308)
T ss_dssp SSSEEEEEEEEECCC-CBHHHHH
T ss_pred CCCceeEEEEehhhh-cCHHHHH
Confidence 4799999998 5998875
No 387
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=98.79 E-value=1.9e-09 Score=112.66 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=69.0
Q ss_pred cCCcccccccCCCceEEEEEEcCC---------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccc------
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPS---------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVK------ 688 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~---------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~------ 688 (716)
++|...+.||+|+||.||+|.... ++.||||++... +.+.+|++++.+++|||||+
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~---------~~~~~E~~~l~~l~h~niv~~~~~~~ 112 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD---------GRLFNEQNFFQRAAKPLQVNKWKKLY 112 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT---------STHHHHHHHHHHHCCHHHHHHHHHHT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc---------chHHHHHHHHHHhcccchhhhhhhhc
Confidence 578899999999999999997653 788999998652 34789999999999999998
Q ss_pred ---------cceEEEe-CCeeeEEEcccCCCCHHhHh
Q 041300 689 ---------FYGFCSH-AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 689 ---------l~g~~~~-~~~~~lv~Ey~~~GsL~~~l 715 (716)
+++++.. .+..++||||| +|+|.+++
T Consensus 113 ~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l 148 (352)
T 2jii_A 113 STPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSAL 148 (352)
T ss_dssp TCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHH
T ss_pred cCCccCccchhhccccCCcEEEEEecCC-CcCHHHHH
Confidence 6778876 67889999999 99999986
No 388
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=98.78 E-value=1.7e-09 Score=110.89 Aligned_cols=95 Identities=19% Similarity=0.251 Sum_probs=68.4
Q ss_pred HhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccch--hhHHHHHHHHHHHhcC----CCCCccccceEE
Q 041300 621 RETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQI--ADQKEFLTEVQALTEI----RHRNIVKFYGFC 693 (716)
Q Consensus 621 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~--~~~~~~~~ei~~l~~l----~H~niv~l~g~~ 693 (716)
...++|...+.||+|+||.||+|.. .+++.||||++......... .....+.+|+.++.++ +||||+++++++
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~ 107 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF 107 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence 3356799999999999999999975 46889999999754322111 1223466899998888 899999999999
Q ss_pred EeCCeeeEEEcc-cCCCCHHhHh
Q 041300 694 SHAQHSFLVYEF-LERGSLAAIL 715 (716)
Q Consensus 694 ~~~~~~~lv~Ey-~~~GsL~~~l 715 (716)
...+..++|||| +++|+|.+++
T Consensus 108 ~~~~~~~~v~e~~~~~~~L~~~l 130 (312)
T 2iwi_A 108 ETQEGFMLVLERPLPAQDLFDYI 130 (312)
T ss_dssp -----CEEEEECCSSEEEHHHHH
T ss_pred ecCCeEEEEEEecCCCCCHHHHH
Confidence 998999999999 8999999876
No 389
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=98.78 E-value=2.8e-09 Score=111.03 Aligned_cols=91 Identities=23% Similarity=0.169 Sum_probs=66.8
Q ss_pred cCCcccccccCCCceEEEEEEcC----CCCEEEEEEccccCCccch-------hhHHHHHHHHHHHhcCCCCCccccceE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP----SGEVVAVKKFHSSIPCDQI-------ADQKEFLTEVQALTEIRHRNIVKFYGF 692 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~----~~~~vavK~l~~~~~~~~~-------~~~~~~~~ei~~l~~l~H~niv~l~g~ 692 (716)
.+|...+.||+|+||.||+|... .+..||||++......... .....+.+|+..+..++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 56889999999999999999764 5678999998753211000 012347788899999999999999999
Q ss_pred EEe----CCeeeEEEcccCCCCHHhHh
Q 041300 693 CSH----AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 693 ~~~----~~~~~lv~Ey~~~GsL~~~l 715 (716)
+.. ....|+||||| +|+|.+++
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l 142 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKIS 142 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHC
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHH
Confidence 988 67789999999 99999886
No 390
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=98.76 E-value=8.6e-09 Score=108.47 Aligned_cols=90 Identities=10% Similarity=0.035 Sum_probs=60.3
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHH---HHHhcCCCCCccccc-------e
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEV---QALTEIRHRNIVKFY-------G 691 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei---~~l~~l~H~niv~l~-------g 691 (716)
...|...+.||+|+||.||+|.. .+++.||||++....... ....+.+.+|+ ..+++ +|||+|+++ +
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d 138 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENS-RSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSD 138 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTH-HHHHHHHHHHHHHHHHHHC-----------CBCCCCE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEeccccc-ccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeeh
Confidence 34588899999999999999975 468899999998743222 22445677884 55566 799977644 5
Q ss_pred EEEeC-----------------CeeeEEEcccCCCCHHhHh
Q 041300 692 FCSHA-----------------QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 692 ~~~~~-----------------~~~~lv~Ey~~~GsL~~~l 715 (716)
++..+ ...|+|||||+ |+|.+++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l 178 (371)
T 3q60_A 139 AVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLF 178 (371)
T ss_dssp EEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHH
T ss_pred heecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHH
Confidence 55443 23799999999 8999986
No 391
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=98.74 E-value=1.3e-08 Score=106.64 Aligned_cols=87 Identities=24% Similarity=0.309 Sum_probs=60.0
Q ss_pred HHHHhhcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC
Q 041300 618 EIVRETNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA 696 (716)
Q Consensus 618 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~ 696 (716)
......++|...+.||+|+||.||+|.. .++..||||++..... ....+.+|++.+..++|||||++++++...
T Consensus 17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~l~~l~h~niv~~~~~~~~~ 91 (360)
T 3e3p_A 17 RSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-----FRNRELQIMQDLAVLHHPNIVQLQSYFYTL 91 (360)
T ss_dssp HHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT-----CCCHHHHHHHHHHHHCCTTBCCEEEEEEEE
T ss_pred hchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-----ccHHHHHHHHHHHhcCCCCcccHHHhhhcc
Confidence 3445667899999999999999999975 4689999999865321 123467788888999999999999999764
Q ss_pred Ce-------eeEEEcccCCC
Q 041300 697 QH-------SFLVYEFLERG 709 (716)
Q Consensus 697 ~~-------~~lv~Ey~~~G 709 (716)
+. .++||||++++
T Consensus 92 ~~~~~~~~~~~lv~e~~~~~ 111 (360)
T 3e3p_A 92 GERDRRDIYLNVVMEYVPDT 111 (360)
T ss_dssp CSSCTTCEEEEEEEECCSCB
T ss_pred ccccccceeEEEEeeccccc
Confidence 43 78999999975
No 392
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=98.73 E-value=4.5e-09 Score=112.50 Aligned_cols=82 Identities=30% Similarity=0.449 Sum_probs=65.1
Q ss_pred cCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeC----C-
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHA----Q- 697 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~----~- 697 (716)
..|...++||+|+||.||+|... +++.||||++.... ..+.+|++++++++|||||++++++... +
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~--------~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~ 125 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK--------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDE 125 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT--------TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc--------hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcc
Confidence 35888899999999999999764 58999999986531 1234799999999999999999998652 1
Q ss_pred -eeeEEEcccCCCCHHhH
Q 041300 698 -HSFLVYEFLERGSLAAI 714 (716)
Q Consensus 698 -~~~lv~Ey~~~GsL~~~ 714 (716)
..++|||||++ ++.+.
T Consensus 126 ~~~~lv~e~~~~-~l~~~ 142 (420)
T 1j1b_A 126 VYLNLVLDYVPE-TVYRV 142 (420)
T ss_dssp EEEEEEEECCCE-EHHHH
T ss_pred eeEEeehhcccc-cHHHH
Confidence 35799999986 45443
No 393
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=98.71 E-value=1.8e-08 Score=103.50 Aligned_cols=87 Identities=21% Similarity=0.331 Sum_probs=61.8
Q ss_pred hcCCcccccccCCCceEEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCeeeE
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~~~l 701 (716)
..+|...+.||+|+||.||+|... +++.||||++..... .....+.+..+..+++.++||||+++++++..++..++
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~l 101 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGN--KEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFI 101 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSC--HHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEeccccc--chHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEE
Confidence 356888899999999999999764 689999999976321 11122334455567888899999999999999999999
Q ss_pred EEcccCCCCHH
Q 041300 702 VYEFLERGSLA 712 (716)
Q Consensus 702 v~Ey~~~GsL~ 712 (716)
||||+ ++.+.
T Consensus 102 v~e~~-~~~~~ 111 (318)
T 2dyl_A 102 AMELM-GTCAE 111 (318)
T ss_dssp EECCC-SEEHH
T ss_pred EEecc-CCcHH
Confidence 99999 44443
No 394
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=98.71 E-value=2.4e-08 Score=107.12 Aligned_cols=86 Identities=19% Similarity=0.302 Sum_probs=71.4
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC------CCCCccccceEEEeC
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI------RHRNIVKFYGFCSHA 696 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l------~H~niv~l~g~~~~~ 696 (716)
..|...++||+|+||.||+|.. .+++.||||++... ....+++.+|++++..+ +|+||+++++++...
T Consensus 97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-----~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~ 171 (429)
T 3kvw_A 97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-----KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR 171 (429)
T ss_dssp TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-----HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET
T ss_pred CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-----cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC
Confidence 4688899999999999999964 45889999999752 11345678888887776 677999999999999
Q ss_pred CeeeEEEcccCCCCHHhHh
Q 041300 697 QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 697 ~~~~lv~Ey~~~GsL~~~l 715 (716)
+..++|||||. |+|.+++
T Consensus 172 ~~~~lv~e~~~-~~L~~~l 189 (429)
T 3kvw_A 172 NHICMTFELLS-MNLYELI 189 (429)
T ss_dssp TEEEEEECCCC-CBHHHHH
T ss_pred CeEEEEEeccC-CCHHHHH
Confidence 99999999997 6888775
No 395
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=98.70 E-value=4.9e-09 Score=111.16 Aligned_cols=80 Identities=26% Similarity=0.353 Sum_probs=65.0
Q ss_pred cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEeCCe-----
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSHAQH----- 698 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~~~~----- 698 (716)
..|...++||+|+||.||+|+...+..||+|++..... ...+|+++++.++|||||++++++...+.
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~--------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~ 111 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR--------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEV 111 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT--------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc--------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCce
Confidence 46888999999999999999877666799998864221 12369999999999999999999966443
Q ss_pred -eeEEEcccCCCCH
Q 041300 699 -SFLVYEFLERGSL 711 (716)
Q Consensus 699 -~~lv~Ey~~~GsL 711 (716)
.++|||||+++.+
T Consensus 112 ~~~lv~e~~~~~l~ 125 (394)
T 4e7w_A 112 FLNLVLEYVPETVY 125 (394)
T ss_dssp EEEEEEECCSEEHH
T ss_pred EEEEEeeccCccHH
Confidence 7899999998643
No 396
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=98.69 E-value=1.3e-08 Score=105.38 Aligned_cols=86 Identities=22% Similarity=0.324 Sum_probs=72.6
Q ss_pred cCCcccccccCCCceEEEEEEc--CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCC------ccccceEEEe
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL--PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN------IVKFYGFCSH 695 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~--~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~n------iv~l~g~~~~ 695 (716)
..|...+.||+|+||.||+|.. .+++.||||++... . ...+.+.+|++++..++|++ ++++++++..
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~----~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~ 88 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV----D-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH 88 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS----H-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE
T ss_pred CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC----C-chhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc
Confidence 4788999999999999999964 36789999998642 1 13467889999998887665 9999999999
Q ss_pred CCeeeEEEcccCCCCHHhHh
Q 041300 696 AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 696 ~~~~~lv~Ey~~~GsL~~~l 715 (716)
.+..++||||+ +|+|.+++
T Consensus 89 ~~~~~lv~e~~-~~~l~~~l 107 (339)
T 1z57_A 89 HGHICIVFELL-GLSTYDFI 107 (339)
T ss_dssp TTEEEEEEECC-CCBHHHHH
T ss_pred CCcEEEEEcCC-CCCHHHHH
Confidence 99999999999 88998876
No 397
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=98.69 E-value=9.2e-09 Score=107.91 Aligned_cols=92 Identities=21% Similarity=0.285 Sum_probs=68.5
Q ss_pred hcCCcccccccCCCceEEEEEEcCC------CCEEEEEEccccCCccch-------hhHHHHHHHHHHHhcCCCCCcccc
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAELPS------GEVVAVKKFHSSIPCDQI-------ADQKEFLTEVQALTEIRHRNIVKF 689 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~~~------~~~vavK~l~~~~~~~~~-------~~~~~~~~ei~~l~~l~H~niv~l 689 (716)
..+|...+.||+|+||.||+|.... ++.||||++......... .....+..|+..+..++|||||++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 4579999999999999999997654 468999998753210000 001124556667888899999999
Q ss_pred ceEEEeC----CeeeEEEcccCCCCHHhHh
Q 041300 690 YGFCSHA----QHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 690 ~g~~~~~----~~~~lv~Ey~~~GsL~~~l 715 (716)
++++... ...|+||||| +|+|.+++
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~ 142 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIY 142 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHH
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHH
Confidence 9999775 4479999999 99999876
No 398
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=98.69 E-value=2.4e-08 Score=100.35 Aligned_cols=93 Identities=13% Similarity=0.105 Sum_probs=69.4
Q ss_pred HHHHHhhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccc-----h---------hhHHHHHHHHHHHhcCC
Q 041300 617 DEIVRETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQ-----I---------ADQKEFLTEVQALTEIR 682 (716)
Q Consensus 617 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~-----~---------~~~~~~~~ei~~l~~l~ 682 (716)
..+......|...+.||+|+||.||+|...+|+.||||.++....... . .....+.+|++++++++
T Consensus 83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~ 162 (282)
T 1zar_A 83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ 162 (282)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence 344444556777899999999999999877789999999964321100 0 13456899999999999
Q ss_pred CCCccccceEEEeCCeeeEEEcccCCCCHHh
Q 041300 683 HRNIVKFYGFCSHAQHSFLVYEFLERGSLAA 713 (716)
Q Consensus 683 H~niv~l~g~~~~~~~~~lv~Ey~~~GsL~~ 713 (716)
| +++.+++. .+..++|||||++|+|.+
T Consensus 163 --~-~~v~~~~~-~~~~~lvmE~~~g~~L~~ 189 (282)
T 1zar_A 163 --G-LAVPKVYA-WEGNAVLMELIDAKELYR 189 (282)
T ss_dssp --T-SSSCCEEE-EETTEEEEECCCCEEGGG
T ss_pred --C-CCcCeEEe-ccceEEEEEecCCCcHHH
Confidence 5 77777654 356799999999999987
No 399
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=98.68 E-value=1.5e-08 Score=107.57 Aligned_cols=86 Identities=20% Similarity=0.304 Sum_probs=69.7
Q ss_pred cCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC--------CCCccccceEEE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR--------HRNIVKFYGFCS 694 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~--------H~niv~l~g~~~ 694 (716)
..|...++||+|+||+||+|. ..+++.||||++... . ...+.+.+|++++.+++ |+|||++++++.
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~ 111 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA----E-HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFK 111 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC----H-HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEE
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC----C-cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeeccee
Confidence 568899999999999999996 456889999998742 1 13467899999999886 788999999997
Q ss_pred ----eCCeeeEEEcccCCCCHHhHh
Q 041300 695 ----HAQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 695 ----~~~~~~lv~Ey~~~GsL~~~l 715 (716)
.....++||||+ +|++.+++
T Consensus 112 ~~~~~~~~~~lv~e~~-~~~l~~~~ 135 (397)
T 1wak_A 112 ISGVNGTHICMVFEVL-GHHLLKWI 135 (397)
T ss_dssp EEETTEEEEEEEECCC-CCBHHHHH
T ss_pred ecCCCCceEEEEEecc-CccHHHHH
Confidence 445789999999 55666553
No 400
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=98.68 E-value=1.8e-08 Score=102.26 Aligned_cols=86 Identities=21% Similarity=0.319 Sum_probs=71.4
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEE-EeCCeee
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFC-SHAQHSF 700 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~-~~~~~~~ 700 (716)
.++|...+.||+|+||.||+|+. .+++.||||++.... ...++.+|++++.+++|++++..++++ ...+..+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~ 81 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT------KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV 81 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS------SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc------chhHHHHHHHHHHHhhcCCCCCccccccCCCCceE
Confidence 45788999999999999999974 578999999986532 123588999999999999988777777 4566789
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+||||+ +|+|.+++
T Consensus 82 lv~e~~-~~~L~~~~ 95 (296)
T 3uzp_A 82 MVMELL-GPSLEDLF 95 (296)
T ss_dssp EEEECC-CCBHHHHH
T ss_pred EEEEec-CCCHHHHH
Confidence 999999 99999876
No 401
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=98.67 E-value=8.4e-09 Score=106.13 Aligned_cols=94 Identities=19% Similarity=0.295 Sum_probs=75.6
Q ss_pred hhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccch--hhHHHHHHHHHHHhcCC--CCCccccceEEEeC
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQI--ADQKEFLTEVQALTEIR--HRNIVKFYGFCSHA 696 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~--~~~~~~~~ei~~l~~l~--H~niv~l~g~~~~~ 696 (716)
...+|...+.||+|+||.||+|. ..+++.||||++......... ...+.+.+|++++.+++ |+|++++++++..+
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 34578899999999999999996 456889999999754322110 01234778999999996 59999999999999
Q ss_pred CeeeEEEcccCC-CCHHhHh
Q 041300 697 QHSFLVYEFLER-GSLAAIL 715 (716)
Q Consensus 697 ~~~~lv~Ey~~~-GsL~~~l 715 (716)
+..++||||+.+ |+|.+++
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l 140 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFI 140 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHH
T ss_pred CcEEEEEEcCCCCccHHHHH
Confidence 999999999986 8998875
No 402
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=98.64 E-value=4e-08 Score=99.63 Aligned_cols=86 Identities=21% Similarity=0.319 Sum_probs=68.7
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEE-EeCCeee
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFC-SHAQHSF 700 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~-~~~~~~~ 700 (716)
.+.|...+.||+|+||.||+|.. .+++.||||++.... ...++.+|++++..++|++++..++++ ..++..+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~ 81 (296)
T 4hgt_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT------KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV 81 (296)
T ss_dssp ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc------cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceE
Confidence 46799999999999999999974 578899999875432 123488899999999999988888777 5566789
Q ss_pred EEEcccCCCCHHhHh
Q 041300 701 LVYEFLERGSLAAIL 715 (716)
Q Consensus 701 lv~Ey~~~GsL~~~l 715 (716)
+||||+ +|+|.+++
T Consensus 82 lv~e~~-~~~L~~~~ 95 (296)
T 4hgt_A 82 MVMELL-GPSLEDLF 95 (296)
T ss_dssp EEEECC-CCBHHHHH
T ss_pred EEEEcc-CCCHHHHH
Confidence 999999 99999876
No 403
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=98.62 E-value=2.9e-08 Score=104.49 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=72.0
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-----------CCCccccce
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-----------HRNIVKFYG 691 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-----------H~niv~l~g 691 (716)
.+|...+.||+|+||.||+|.. .+++.||||++... . .....+.+|++++.+++ ||||+++++
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~ 93 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD----K-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLD 93 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC----H-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC----c-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHH
Confidence 5688999999999999999974 56889999998742 1 23467889999998886 899999999
Q ss_pred EEEeCC----eeeEEEcccCCCCHHhHh
Q 041300 692 FCSHAQ----HSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 692 ~~~~~~----~~~lv~Ey~~~GsL~~~l 715 (716)
++...+ ..++||||+ +|+|.+++
T Consensus 94 ~~~~~~~~~~~~~lv~e~~-~~~L~~~~ 120 (373)
T 1q8y_A 94 HFNHKGPNGVHVVMVFEVL-GENLLALI 120 (373)
T ss_dssp EEEEEETTEEEEEEEECCC-CEEHHHHH
T ss_pred HhhccCCCCceEEEEEecC-CCCHHHHH
Confidence 997654 689999999 88998875
No 404
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=98.61 E-value=8.1e-08 Score=104.08 Aligned_cols=85 Identities=24% Similarity=0.312 Sum_probs=68.9
Q ss_pred cCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCC-CccccceEEEeCCeeeE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR-NIVKFYGFCSHAQHSFL 701 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~-niv~l~g~~~~~~~~~l 701 (716)
++|...++||+|+||.||+|.. .+++.||||++..... ..++.+|++++..++|+ +++.+..++...+..++
T Consensus 7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~------~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~l 80 (483)
T 3sv0_A 7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK------HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVL 80 (483)
T ss_dssp TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS------SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEE
T ss_pred CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc------cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEE
Confidence 5788999999999999999974 5689999998765321 13488999999999874 55555566677788899
Q ss_pred EEcccCCCCHHhHh
Q 041300 702 VYEFLERGSLAAIL 715 (716)
Q Consensus 702 v~Ey~~~GsL~~~l 715 (716)
||||+ +|+|.+++
T Consensus 81 vme~~-g~sL~~ll 93 (483)
T 3sv0_A 81 VMDLL-GPSLEDLF 93 (483)
T ss_dssp EEECC-CCBHHHHH
T ss_pred EEECC-CCCHHHHH
Confidence 99999 99999886
No 405
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=98.55 E-value=7.6e-08 Score=101.62 Aligned_cols=87 Identities=28% Similarity=0.348 Sum_probs=71.7
Q ss_pred hcCCcccccccCCCceEEEEEEc-CCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CC-----CccccceEEEe
Q 041300 623 TNDFDAEYCIGNGGHGSVYRAEL-PSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HR-----NIVKFYGFCSH 695 (716)
Q Consensus 623 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~-----niv~l~g~~~~ 695 (716)
..+|...+.||+|+||+||+|.. .+++.||||++... . ....++.+|+.++..++ |+ ++|++++++..
T Consensus 53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~----~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~ 127 (382)
T 2vx3_A 53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK----K-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF 127 (382)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS----H-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE
T ss_pred eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc----H-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc
Confidence 46799999999999999999964 46789999999742 1 13466888988888875 55 49999999999
Q ss_pred CCeeeEEEcccCCCCHHhHh
Q 041300 696 AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 696 ~~~~~lv~Ey~~~GsL~~~l 715 (716)
.+..++||||++ |+|.+++
T Consensus 128 ~~~~~lv~e~~~-~~L~~~l 146 (382)
T 2vx3_A 128 RNHLCLVFEMLS-YNLYDLL 146 (382)
T ss_dssp TTEEEEEEECCC-CBHHHHH
T ss_pred CCceEEEEecCC-CCHHHHH
Confidence 999999999996 5998876
No 406
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.49 E-value=8.9e-08 Score=106.05 Aligned_cols=85 Identities=22% Similarity=0.171 Sum_probs=60.6
Q ss_pred cccCCCceEEEEE-EcCCCCEEEEEEccccCCcc------chhhHHHHHHHHHHHhcC-CCCCccccceEEEeCCeeeEE
Q 041300 631 CIGNGGHGSVYRA-ELPSGEVVAVKKFHSSIPCD------QIADQKEFLTEVQALTEI-RHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 631 ~ig~g~~g~v~~~-~~~~~~~vavK~l~~~~~~~------~~~~~~~~~~ei~~l~~l-~H~niv~l~g~~~~~~~~~lv 702 (716)
..+.|+.|.++.+ ++--|+.+|||++.+..... .....++|.+|+++|+++ .|+||+++++++.+++..|||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 3456666666654 23357889999997543211 112346799999999999 799999999999999999999
Q ss_pred EcccCCCCHHhHh
Q 041300 703 YEFLERGSLAAIL 715 (716)
Q Consensus 703 ~Ey~~~GsL~~~l 715 (716)
||||+||+|.++|
T Consensus 321 MEyv~G~~L~d~i 333 (569)
T 4azs_A 321 MEKLPGRLLSDML 333 (569)
T ss_dssp EECCCSEEHHHHH
T ss_pred EecCCCCcHHHHH
Confidence 9999999999987
No 407
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=98.49 E-value=1.1e-07 Score=99.09 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=70.3
Q ss_pred cCCcccccccCCCceEEEEEEcC-CC-CEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCC------ccccceEEEe
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELP-SG-EVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN------IVKFYGFCSH 695 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~-~~-~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~n------iv~l~g~~~~ 695 (716)
++|...+.||+|+||+||+|... ++ ..||||++... . ...+.+.+|++++++++|++ ++.+++++..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~----~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~ 93 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV----G-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF 93 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC----H-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc----c-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee
Confidence 57889999999999999999643 34 68999998642 1 13467889999999987776 8999999999
Q ss_pred CCeeeEEEcccCCCCHHhHh
Q 041300 696 AQHSFLVYEFLERGSLAAIL 715 (716)
Q Consensus 696 ~~~~~lv~Ey~~~GsL~~~l 715 (716)
.+..++||||+ +|++.+++
T Consensus 94 ~~~~~lv~e~~-~~~l~~~l 112 (355)
T 2eu9_A 94 HGHMCIAFELL-GKNTFEFL 112 (355)
T ss_dssp TTEEEEEEECC-CCBHHHHH
T ss_pred CCeEEEEEecc-CCChHHHH
Confidence 99999999999 56676654
No 408
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=3e-08 Score=92.71 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=81.8
Q ss_pred CCCCCCCCcEEECCCC-Ccccc----CcccccCCCCCCEEECcCCcCccc----CCccccCCCCCCEEEcccccCccC--
Q 041300 71 SFSSFPQLVHLDLSLN-GFFGT----IPSQIGNLTKLSYISLDSNQLSGK----IPAEVGLLTHLKVLSFQFNELDGS-- 139 (716)
Q Consensus 71 ~f~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~-- 139 (716)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.|... +...+...+.|++|+|++|.|...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3456778888888888 77532 344566778888888888888643 233455567888888888888743
Q ss_pred --CCccccCCCCCceeec--ccccccCCC----CccccCCcCCcEEEeeccccc
Q 041300 140 --IPPEVCQLSSIEELFL--YSNHLNGSL----PPFLGNLSNIVRLYINNNSLS 185 (716)
Q Consensus 140 --~~~~~~~l~~L~~L~L--~~N~l~~~~----p~~~~~l~~L~~L~L~~n~l~ 185 (716)
+...+...++|++|+| ++|.+.... ...+...++|++|+|++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455667778888888 778886543 234455688899999888875
No 409
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=1e-07 Score=89.06 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=8.6
Q ss_pred ccCCCCCCEEEccCC-ccc
Q 041300 353 IGNMSQLQALDLSLN-HIV 370 (716)
Q Consensus 353 ~~~l~~L~~L~L~~n-~l~ 370 (716)
+...++|++|+|++| .+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HTTCTTCCEEECTTCTTCC
T ss_pred HhcCCCCCEEEecCCCCCC
Confidence 334445555555555 443
No 410
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=1.1e-07 Score=93.42 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=16.5
Q ss_pred CCCCCEEEccCCcCCc--cCchhhcCcCCCCEEECcCCcCc
Q 041300 404 LIELEYLDFSANKFNN--SVPESLGNLLKLHYLGLSNNQFV 442 (716)
Q Consensus 404 l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~ 442 (716)
+++|+.|+|++|.|++ .+|..+..+++|+.|+|++|+|.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 3444444444444443 12233334444444444444443
No 411
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=98.05 E-value=2.9e-06 Score=83.86 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=59.4
Q ss_pred CcccccccCCCceEEEEEEc-CCCCE--EEEEEccccCCc-c-------------------chhhHHHHHHHHHHHhcCC
Q 041300 626 FDAEYCIGNGGHGSVYRAEL-PSGEV--VAVKKFHSSIPC-D-------------------QIADQKEFLTEVQALTEIR 682 (716)
Q Consensus 626 ~~~~~~ig~g~~g~v~~~~~-~~~~~--vavK~l~~~~~~-~-------------------~~~~~~~~~~ei~~l~~l~ 682 (716)
|.....||+|+||.||+|.. .+|+. ||||+++..... . .......+.+|+..+.+++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999986 67888 999987543111 0 0011236889999999999
Q ss_pred CCCccccceEEEeCCeeeEEEcccCC-C----CHHhH
Q 041300 683 HRNIVKFYGFCSHAQHSFLVYEFLER-G----SLAAI 714 (716)
Q Consensus 683 H~niv~l~g~~~~~~~~~lv~Ey~~~-G----sL~~~ 714 (716)
|+++.....+.. +..++||||+.+ | +|.++
T Consensus 129 ~~~i~~p~~~~~--~~~~lVmE~~g~~g~~~~~L~~~ 163 (258)
T 1zth_A 129 EAGVSVPQPYTY--MKNVLLMEFIGEDELPAPTLVEL 163 (258)
T ss_dssp HTTCCCCCEEEE--ETTEEEEECCEETTEECCBHHHH
T ss_pred hCCCCCCeEEEc--CCCEEEEEecCCCCCccccHHHH
Confidence 887533222222 356899999942 4 66554
No 412
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=97.93 E-value=1.6e-06 Score=89.59 Aligned_cols=89 Identities=8% Similarity=0.098 Sum_probs=57.4
Q ss_pred cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCc-----c-----chhhHHHH--------HHHHHHHhcCCCCC
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPC-----D-----QIADQKEF--------LTEVQALTEIRHRN 685 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~-----~-----~~~~~~~~--------~~ei~~l~~l~H~n 685 (716)
.-|.....||.|+||.||+|.-.+|+.||||+++..... . .......+ .+|...|.++.+.+
T Consensus 95 ~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g 174 (397)
T 4gyi_A 95 DVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG 174 (397)
T ss_dssp SCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 348888999999999999998888999999987542110 0 00011122 34556666665555
Q ss_pred ccccceEEEeCCeeeEEEcccCCCCHHhH
Q 041300 686 IVKFYGFCSHAQHSFLVYEFLERGSLAAI 714 (716)
Q Consensus 686 iv~l~g~~~~~~~~~lv~Ey~~~GsL~~~ 714 (716)
+.....+... ..+|||||++++.|.++
T Consensus 175 v~vp~p~~~~--~~~LVME~i~G~~L~~l 201 (397)
T 4gyi_A 175 FPVPEPIAQS--RHTIVMSLVDALPMRQV 201 (397)
T ss_dssp CSCCCEEEEE--TTEEEEECCSCEEGGGC
T ss_pred CCCCeeeecc--CceEEEEecCCccHhhh
Confidence 4333323222 24799999999888664
No 413
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.84 E-value=4.2e-06 Score=76.00 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=17.3
Q ss_pred CCcEEECCCCCccccCcccccCCCCCCEEECcCC
Q 041300 77 QLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSN 110 (716)
Q Consensus 77 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N 110 (716)
.|++||+|++.|+..--..+.++++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555554433334445555555555555
No 414
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=97.84 E-value=1.1e-05 Score=85.88 Aligned_cols=61 Identities=16% Similarity=0.078 Sum_probs=46.6
Q ss_pred hhcCCcccccccCCCceEEEEEE-cCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCC
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAE-LPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH 683 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H 683 (716)
.+..|...++||+|+||.||+|. ..+|+.||||++........ ...+.|.+|+.++..++|
T Consensus 76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~-~~~~~~~~E~~~~~~l~~ 137 (413)
T 3dzo_A 76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPS-NAIKQMKEEVLRLRLLRG 137 (413)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC-----CCHHHHHHHHGGGGSTT
T ss_pred CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccH-HHHHHHHHHHHHHHhhcc
Confidence 34567888999999999999997 55789999999874322221 134679999999999987
No 415
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=1.3e-05 Score=72.69 Aligned_cols=82 Identities=12% Similarity=0.083 Sum_probs=34.3
Q ss_pred CCCEEEccCCcCCccCchhhcCcCCCCEEECcCCc-CcccCChhhhCC----CCCCEEECCCCc-CccccchhccCCCCC
Q 041300 406 ELEYLDFSANKFNNSVPESLGNLLKLHYLGLSNNQ-FVLELPKELEKL----VQLSELDASHNL-FGGEIPFQICSLKSL 479 (716)
Q Consensus 406 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~ls~N~-l~~~~p~~~~~l~~L 479 (716)
.|+.||++++.+++.--..+.++++|+.|+|++|. ++..--..+..+ ++|++|+|++|. ++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444443333334444445555554443 332211222222 135555555542 443333334444555
Q ss_pred CEEECcCC
Q 041300 480 EKLNLSHN 487 (716)
Q Consensus 480 ~~L~ls~N 487 (716)
+.|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555544
No 416
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.07 E-value=0.00038 Score=64.44 Aligned_cols=10 Identities=10% Similarity=0.421 Sum_probs=4.4
Q ss_pred CCCCEEEccC
Q 041300 357 SQLQALDLSL 366 (716)
Q Consensus 357 ~~L~~L~L~~ 366 (716)
+.|+.|+|++
T Consensus 41 ~~L~~L~L~~ 50 (197)
T 1pgv_A 41 TDLKEVNINN 50 (197)
T ss_dssp SSCCEEECTT
T ss_pred CCccEEECCC
Confidence 3444444444
No 417
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=97.06 E-value=0.0013 Score=64.74 Aligned_cols=88 Identities=13% Similarity=0.006 Sum_probs=69.1
Q ss_pred hhcCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeee
Q 041300 622 ETNDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 622 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~ 700 (716)
...+|......+.|+.+.||+.... +..+++|+....... ....+.+|+++++.+. |..+.++++++...+..|
T Consensus 12 ~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~----~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~ 86 (263)
T 3tm0_A 12 LIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKG----TTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSN 86 (263)
T ss_dssp HHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTT----STTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEE
T ss_pred HhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCC----CHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceE
Confidence 3456877888888999999999754 678999998642111 1235888999998884 677889999998888999
Q ss_pred EEEcccCCCCHHhH
Q 041300 701 LVYEFLERGSLAAI 714 (716)
Q Consensus 701 lv~Ey~~~GsL~~~ 714 (716)
+||||++|.+|.+.
T Consensus 87 lv~e~i~G~~l~~~ 100 (263)
T 3tm0_A 87 LLMSEADGVLCSEE 100 (263)
T ss_dssp EEEECCSSEEHHHH
T ss_pred EEEEecCCeehhhc
Confidence 99999999998764
No 418
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.05 E-value=0.00096 Score=57.62 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=45.0
Q ss_pred EEECCCCcCc-cccchhccCCCCCCEEECcCCcCcccCCcCCcCCCCCCEEEccCCccccc
Q 041300 457 ELDASHNLFG-GEIPFQICSLKSLEKLNLSHNNLSGLIPNCFEGMHGLSIIDISDNQLQGP 516 (716)
Q Consensus 457 ~L~ls~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~l~ls~N~l~~~ 516 (716)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.++.|..+++|+.|+|++|++.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 6777777775 24454322 4688999999999988888899999999999999998764
No 419
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.99 E-value=0.00054 Score=63.35 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=26.3
Q ss_pred CCCCCEEECCCCcCcccc----chhccCCCCCCEEECcCCc---Ccc----cCCcCCcCCCCCCEEEccCCc
Q 041300 452 LVQLSELDASHNLFGGEI----PFQICSLKSLEKLNLSHNN---LSG----LIPNCFEGMHGLSIIDISDNQ 512 (716)
Q Consensus 452 l~~L~~L~ls~N~l~~~~----p~~~~~l~~L~~L~ls~N~---l~~----~~~~~~~~~~~L~~l~ls~N~ 512 (716)
-+.|++|+|++|.|+... -..+..-+.|+.|+|++|. +.. .+...+..-++|+.|+++.|.
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 344555555555544321 1223333445556655432 221 112233344556666665444
No 420
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=96.79 E-value=0.0017 Score=64.75 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=59.0
Q ss_pred cccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCC---CccccceEEEeCCeeeEEE
Q 041300 627 DAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR---NIVKFYGFCSHAQHSFLVY 703 (716)
Q Consensus 627 ~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~---niv~l~g~~~~~~~~~lv~ 703 (716)
...+.++.|.++.||+....+|+.++||+....... ....|.+|++.++.++|. .+++++++. ..++||
T Consensus 18 ~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~----~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvm 89 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPA----LDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAM 89 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCC----CTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEE
T ss_pred cceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcc----hhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEE
Confidence 345678999999999998888999999996542110 235689999999999876 466666653 469999
Q ss_pred cccCCCCH
Q 041300 704 EFLERGSL 711 (716)
Q Consensus 704 Ey~~~GsL 711 (716)
||++++.+
T Consensus 90 e~l~g~~~ 97 (288)
T 3d1u_A 90 EWVDERPP 97 (288)
T ss_dssp ECCCCCCC
T ss_pred EecccCCC
Confidence 99999875
No 421
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=96.71 E-value=0.00099 Score=65.45 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=60.0
Q ss_pred cCCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCC--ccccceEEEeCCeeeE
Q 041300 624 NDFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN--IVKFYGFCSHAQHSFL 701 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~n--iv~l~g~~~~~~~~~l 701 (716)
.++....+.+.|..+.||+....+|..++||..... ....+.+|+++++.+++.+ +.+++++...++..++
T Consensus 20 ~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~-------~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~ 92 (264)
T 1nd4_A 20 FGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG-------ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWL 92 (264)
T ss_dssp TTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC-------TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEE
T ss_pred CCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc-------cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEE
Confidence 345444444466679999998777888999987542 1134778888888886545 4568888877778899
Q ss_pred EEcccCCCCHH
Q 041300 702 VYEFLERGSLA 712 (716)
Q Consensus 702 v~Ey~~~GsL~ 712 (716)
||||++|.++.
T Consensus 93 v~e~i~G~~l~ 103 (264)
T 1nd4_A 93 LLGEVPGQDLL 103 (264)
T ss_dssp EEECCSSEETT
T ss_pred EEEecCCcccC
Confidence 99999998874
No 422
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.45 E-value=0.0052 Score=52.94 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=16.6
Q ss_pred CCcEEECCCCCccccCcccccCCCCCCEEECcCCcC
Q 041300 77 QLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSNQL 112 (716)
Q Consensus 77 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 112 (716)
+|++|+|++|+|+.+.+..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 344555555554444444444444444444444433
No 423
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=94.24 E-value=0.037 Score=57.04 Aligned_cols=80 Identities=14% Similarity=0.270 Sum_probs=55.7
Q ss_pred cccccCCCceEEEEEEcCCCCEEEEEEcc--ccCCccchhhHHHHHHHHHHHhcCC--CCCccccceEEEeC---CeeeE
Q 041300 629 EYCIGNGGHGSVYRAELPSGEVVAVKKFH--SSIPCDQIADQKEFLTEVQALTEIR--HRNIVKFYGFCSHA---QHSFL 701 (716)
Q Consensus 629 ~~~ig~g~~g~v~~~~~~~~~~vavK~l~--~~~~~~~~~~~~~~~~ei~~l~~l~--H~niv~l~g~~~~~---~~~~l 701 (716)
.+.++.|.++.||+....+ ..+++|+.. ..... .....+.+|..+++.++ +..++++++++.+. +..|+
T Consensus 43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~---~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~ 118 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLL---PSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFY 118 (359)
T ss_dssp EEECCC-CCSCEEEEECSS-CEEEEECCCC-------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEE
T ss_pred EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCC---CcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEE
Confidence 4568999999999998754 577888765 32111 12345788999998886 45678888888766 45799
Q ss_pred EEcccCCCCHH
Q 041300 702 VYEFLERGSLA 712 (716)
Q Consensus 702 v~Ey~~~GsL~ 712 (716)
||||++|..+.
T Consensus 119 vme~v~G~~l~ 129 (359)
T 3dxp_A 119 IMEFVSGRVLW 129 (359)
T ss_dssp EEECCCCBCCC
T ss_pred EEEecCCeecC
Confidence 99999998763
No 424
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=92.43 E-value=0.28 Score=49.16 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=59.0
Q ss_pred ccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC---CCCccccceEEEeCCeeeEEEc
Q 041300 628 AEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR---HRNIVKFYGFCSHAQHSFLVYE 704 (716)
Q Consensus 628 ~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~---H~niv~l~g~~~~~~~~~lv~E 704 (716)
....++.|.+..+|+... ++..++||+-... ....|.+|.+.|+.+. ...++++++++...+..|+|||
T Consensus 40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~-------~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme 111 (312)
T 3jr1_A 40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS-------YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLE 111 (312)
T ss_dssp EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG-------GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEE
T ss_pred eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc-------cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEE
Confidence 345689999999999986 4667888986531 2456888988887773 3567888888887888999999
Q ss_pred ccCCCCH
Q 041300 705 FLERGSL 711 (716)
Q Consensus 705 y~~~GsL 711 (716)
|+++..+
T Consensus 112 ~l~G~~~ 118 (312)
T 3jr1_A 112 ALNKSKN 118 (312)
T ss_dssp CCCCCCC
T ss_pred eccCCCC
Confidence 9999764
No 425
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=92.32 E-value=0.24 Score=49.00 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=53.6
Q ss_pred CcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCC---CccccceEEEeCCeeeEE
Q 041300 626 FDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR---NIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 626 ~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~---niv~l~g~~~~~~~~~lv 702 (716)
......+|.|..+.||+.++.+|+.|.||+-...... ....|.+|.+.|+.+.-. -+.+.+++ +..++|
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~----~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv 88 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPA----LDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLA 88 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCC----CTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEE
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcc----hhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEE
Confidence 4445668999999999999999999999986542211 124588899888877422 22333332 234899
Q ss_pred EcccCCCCH
Q 041300 703 YEFLERGSL 711 (716)
Q Consensus 703 ~Ey~~~GsL 711 (716)
|||++++..
T Consensus 89 ~e~l~~~~~ 97 (288)
T 3f7w_A 89 MEWVDERPP 97 (288)
T ss_dssp EECCCCCCC
T ss_pred EEeecccCC
Confidence 999987653
No 426
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=90.15 E-value=0.89 Score=44.21 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=57.3
Q ss_pred cCCcccccccCCCce-EEEEEEcC-CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCccccceEEEeCCeee
Q 041300 624 NDFDAEYCIGNGGHG-SVYRAELP-SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNIVKFYGFCSHAQHSF 700 (716)
Q Consensus 624 ~~~~~~~~ig~g~~g-~v~~~~~~-~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~niv~l~g~~~~~~~~~ 700 (716)
.++.... +..|..| .||+.... ++..+.||+-... ...++.+|...|..+. +--+.++++++.+++..|
T Consensus 25 ~g~~~~~-~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~-------~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~ 96 (272)
T 4gkh_A 25 YGYRWAR-DNVGQSGATIYRLYGKPNAPELFLKHGKGS-------VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAW 96 (272)
T ss_dssp TTCEEEE-EECSSSSCEEEEEECCTTCCCEEEEEEETH-------HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEE
T ss_pred cCCeEEE-ccCCCcCCeEEEEEecCCCeEEEEEECCCC-------CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEE
Confidence 3444433 3445544 68987654 4567888875431 3456888998888774 334668888998899999
Q ss_pred EEEcccCCCCHHh
Q 041300 701 LVYEFLERGSLAA 713 (716)
Q Consensus 701 lv~Ey~~~GsL~~ 713 (716)
+||||+++.++.+
T Consensus 97 lvme~l~G~~~~~ 109 (272)
T 4gkh_A 97 LLTTAIPGKTAFQ 109 (272)
T ss_dssp EEEECCCSEEHHH
T ss_pred EEEEeeCCccccc
Confidence 9999999987654
No 427
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=90.05 E-value=0.32 Score=50.73 Aligned_cols=79 Identities=15% Similarity=0.070 Sum_probs=48.4
Q ss_pred cccccCCCceEEEEEEcC-CCCEEEEEEccccCC--c-cchhhHHHHHHHHHHHhcCCC--CCcc-ccceEEEeCCeeeE
Q 041300 629 EYCIGNGGHGSVYRAELP-SGEVVAVKKFHSSIP--C-DQIADQKEFLTEVQALTEIRH--RNIV-KFYGFCSHAQHSFL 701 (716)
Q Consensus 629 ~~~ig~g~~g~v~~~~~~-~~~~vavK~l~~~~~--~-~~~~~~~~~~~ei~~l~~l~H--~niv-~l~g~~~~~~~~~l 701 (716)
.+.+|.|.++.||++... +++.|+||...+... . ........+.+|.+++..+.. +..| +++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 346899999999999754 467899998654211 0 000012346778888877632 3444 44432 4556789
Q ss_pred EEcccCCC
Q 041300 702 VYEFLERG 709 (716)
Q Consensus 702 v~Ey~~~G 709 (716)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999864
No 428
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=89.86 E-value=0.049 Score=58.09 Aligned_cols=62 Identities=10% Similarity=-0.018 Sum_probs=18.0
Q ss_pred cccccCCCceEEEEEEcCC-CCEEEE------EEccccCCccchhhHHHHHHHHHHHhcCCCCCccccceEEEe
Q 041300 629 EYCIGNGGHGSVYRAELPS-GEVVAV------KKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIVKFYGFCSH 695 (716)
Q Consensus 629 ~~~ig~g~~g~v~~~~~~~-~~~vav------K~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv~l~g~~~~ 695 (716)
.+.+| ||.||+|.+.. ..+||| |..+...... .....|.+|..++...+|||+++.+++...
T Consensus 147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~--e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSE--KRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp TTTSS---BCCC---------CCBGGGC-------------------------------------CBCCCEEEE
T ss_pred cccCC---chhhhcccccccCCchhhhhccCccccccccccc--cccccccccccccccccccccCCCcceEEe
Confidence 44565 99999998854 367888 7665422111 134568899999999999999999998754
No 429
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=87.30 E-value=0.7 Score=46.40 Aligned_cols=74 Identities=9% Similarity=0.130 Sum_probs=52.0
Q ss_pred CCcccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCC--C--CccccceEEEeCCeee
Q 041300 625 DFDAEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH--R--NIVKFYGFCSHAQHSF 700 (716)
Q Consensus 625 ~~~~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H--~--niv~l~g~~~~~~~~~ 700 (716)
.....+.++.|....||+. +..+++|+.... .....+.+|.+++..+.+ . .+.+++++ +..|
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~------~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~ 103 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD------SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRF 103 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH------HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSC
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH------HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcE
Confidence 3455667899999999988 556788875431 123458899998888866 1 22333333 5679
Q ss_pred EEEcccCCCCHH
Q 041300 701 LVYEFLERGSLA 712 (716)
Q Consensus 701 lv~Ey~~~GsL~ 712 (716)
+||||++|.++.
T Consensus 104 lvme~i~G~~l~ 115 (320)
T 3r70_A 104 NIMKYIKGERIT 115 (320)
T ss_dssp EEEECCCCBCCC
T ss_pred EEEeecCCcccc
Confidence 999999998875
No 430
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=85.39 E-value=1.6 Score=44.59 Aligned_cols=75 Identities=7% Similarity=0.128 Sum_probs=54.8
Q ss_pred ccccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCC--ccccceEEEeC-CeeeEEEc
Q 041300 628 AEYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN--IVKFYGFCSHA-QHSFLVYE 704 (716)
Q Consensus 628 ~~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~n--iv~l~g~~~~~-~~~~lv~E 704 (716)
....++.|....+|+... ++..+++|.-... ..+.+|..++..+.... +.++++++... +..|+|||
T Consensus 45 ~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~---------~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e 114 (362)
T 3ovc_A 45 DLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA---------DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISR 114 (362)
T ss_dssp EEEEEEECSSEEEEEEEE-TTEEEEEEEESCC---------HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEE
T ss_pred eEEECCCCCcceEEEEEE-CCcEEEEEeCCch---------hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEE
Confidence 345678899999999876 5678888876431 24788888888886544 45667776654 56899999
Q ss_pred ccCCCCHH
Q 041300 705 FLERGSLA 712 (716)
Q Consensus 705 y~~~GsL~ 712 (716)
|+++..+.
T Consensus 115 ~l~G~~l~ 122 (362)
T 3ovc_A 115 RAQGVTLQ 122 (362)
T ss_dssp CCCSEETT
T ss_pred ecCCCCcc
Confidence 99986653
No 431
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=79.30 E-value=2 Score=42.74 Aligned_cols=74 Identities=18% Similarity=0.145 Sum_probs=51.7
Q ss_pred ccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCC---CccccceEEE-eCCeeeEEEcc
Q 041300 630 YCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR---NIVKFYGFCS-HAQHSFLVYEF 705 (716)
Q Consensus 630 ~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~---niv~l~g~~~-~~~~~~lv~Ey 705 (716)
..++.|....||+. +..++||.-.. . .....+.+|.+++..+++. -+.+.+.++. ..+..|+||||
T Consensus 25 ~~l~~G~~n~v~~v----g~~~VlR~~~~-----~-~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~ 94 (306)
T 3tdw_A 25 ESLGEGFRNYAILV----NGDWVFRFPKS-----Q-QGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRK 94 (306)
T ss_dssp EEEEECSSEEEEEE----TTTEEEEEESS-----H-HHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEEC
T ss_pred eecCCCcceeEEEE----CCEEEEEecCC-----c-hHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEec
Confidence 45788888899987 45577887421 1 1345789999999998753 2456666664 34457899999
Q ss_pred cCCCCHHh
Q 041300 706 LERGSLAA 713 (716)
Q Consensus 706 ~~~GsL~~ 713 (716)
++|..+.+
T Consensus 95 i~G~~l~~ 102 (306)
T 3tdw_A 95 VQGQILGE 102 (306)
T ss_dssp CCSEECHH
T ss_pred cCCeECch
Confidence 99977654
No 432
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=75.99 E-value=3.1 Score=41.84 Aligned_cols=72 Identities=24% Similarity=0.421 Sum_probs=40.0
Q ss_pred cccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcC-----CCCCccccc-e--EEEeCCeeeEE
Q 041300 631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEI-----RHRNIVKFY-G--FCSHAQHSFLV 702 (716)
Q Consensus 631 ~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l-----~H~niv~l~-g--~~~~~~~~~lv 702 (716)
.++.|..+.||+....+| .+++|+.... ..+...|.+++..+ ..|.++... | +....+..++|
T Consensus 39 ~l~gG~~n~~~~v~~~~~-~~vlk~~~~~--------~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l 109 (346)
T 2q83_A 39 VIQGNQMALVWKVHTDSG-AVCLKRIHRP--------EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVV 109 (346)
T ss_dssp ECC----CEEEEEEETTE-EEEEEEECSC--------HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEE
T ss_pred eccccccCcEEEEEeCCC-CEEEEecCCC--------HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEE
Confidence 456677889999987555 4889987641 12233344444433 234444311 1 12346678999
Q ss_pred EcccCCCCH
Q 041300 703 YEFLERGSL 711 (716)
Q Consensus 703 ~Ey~~~GsL 711 (716)
|||++|..+
T Consensus 110 ~~~i~G~~~ 118 (346)
T 2q83_A 110 YDWIEGRPF 118 (346)
T ss_dssp EECCCCBCC
T ss_pred EEeecCccC
Confidence 999998654
No 433
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=75.29 E-value=0.87 Score=46.46 Aligned_cols=82 Identities=4% Similarity=0.007 Sum_probs=52.3
Q ss_pred ccc-cCCCceEEEEEEcC-------CCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-C--CCccccceEEEeC--
Q 041300 630 YCI-GNGGHGSVYRAELP-------SGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-H--RNIVKFYGFCSHA-- 696 (716)
Q Consensus 630 ~~i-g~g~~g~v~~~~~~-------~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H--~niv~l~g~~~~~-- 696 (716)
+.| +.|....+|+.... ++..+++|.-......... ....+.+|+.++..++ + -.+.++++++.+.
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~-~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVF-PTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSS-SCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccC-chhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 456 78888999988654 2567888876542100000 0124677887777774 2 3466777777554
Q ss_pred -CeeeEEEcccCCCCHH
Q 041300 697 -QHSFLVYEFLERGSLA 712 (716)
Q Consensus 697 -~~~~lv~Ey~~~GsL~ 712 (716)
+..|+||||++|..+.
T Consensus 105 ~g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPP 121 (357)
T ss_dssp TSSCEEEEECCCCBCCC
T ss_pred cCCceEEEEecCCCChh
Confidence 3568999999987654
No 434
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=66.61 E-value=2.3 Score=42.15 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=48.3
Q ss_pred ccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC-CCCc--cccceEEEeCC---eeeEEE
Q 041300 630 YCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR-HRNI--VKFYGFCSHAQ---HSFLVY 703 (716)
Q Consensus 630 ~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~-H~ni--v~l~g~~~~~~---~~~lv~ 703 (716)
+.++.|....||+.. ..+++|.-... .....+.+|.+++..+. +..+ .+.++.+...+ ..|+||
T Consensus 26 ~~~~~G~~n~v~~v~----~~~vlR~~~~~------~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm 95 (304)
T 3sg8_A 26 EISGEGNDCIAYEIN----RDFIFKFPKHS------RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGF 95 (304)
T ss_dssp CEEEECSSEEEEEST----TSEEEEEESSH------HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEE
T ss_pred EecCCCCcceEEEEC----CEEEEEecCCc------chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEE
Confidence 457899999999763 45788875431 13467889999998873 3333 33333332222 358999
Q ss_pred cccCCCCHHh
Q 041300 704 EFLERGSLAA 713 (716)
Q Consensus 704 Ey~~~GsL~~ 713 (716)
||++|..+.+
T Consensus 96 ~~i~G~~l~~ 105 (304)
T 3sg8_A 96 TKIKGVPLTP 105 (304)
T ss_dssp ECCCCEECCH
T ss_pred cccCCeECCc
Confidence 9999977653
No 435
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=60.47 E-value=8.6 Score=25.27 Aligned_cols=6 Identities=17% Similarity=0.351 Sum_probs=2.5
Q ss_pred Eechhh
Q 041300 565 VFPVLG 570 (716)
Q Consensus 565 v~~v~~ 570 (716)
.+++++
T Consensus 14 A~gVVg 19 (44)
T 2ks1_B 14 ATGMVG 19 (44)
T ss_dssp THHHHH
T ss_pred EeehhH
Confidence 334444
No 436
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=57.16 E-value=22 Score=35.21 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=46.9
Q ss_pred cccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCC--CccccceE-----EEeCCeeeEEE
Q 041300 631 CIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHR--NIVKFYGF-----CSHAQHSFLVY 703 (716)
Q Consensus 631 ~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~--niv~l~g~-----~~~~~~~~lv~ 703 (716)
.++ |....||+....+|..+++|....... ....+..|..++..++.. .+++++.. ....+..++||
T Consensus 33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~-----~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~ 106 (328)
T 1zyl_A 33 PLN-SYENRVYQFQDEDRRRFVVKFYRPERW-----TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVF 106 (328)
T ss_dssp EEC-CSSSEEEEECCTTCCCEEEEEECTTTS-----CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEE
T ss_pred eec-CcccceEEEEcCCCCEEEEEEcCCCCC-----CHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEE
Confidence 455 777899998776777789999864211 234566677777666322 23444432 22345668899
Q ss_pred cccCCCC
Q 041300 704 EFLERGS 710 (716)
Q Consensus 704 Ey~~~Gs 710 (716)
||++|..
T Consensus 107 ~~i~G~~ 113 (328)
T 1zyl_A 107 PSVGGRQ 113 (328)
T ss_dssp ECCCCEE
T ss_pred EecCCCC
Confidence 9998854
No 437
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=55.46 E-value=22 Score=36.87 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=45.3
Q ss_pred cccccCCCceEEEEEEcCCCCEEEEEEccccCC--ccc---hhhHHHHHHHHHHHh-cCCCCCccccceEEEeCCeeeEE
Q 041300 629 EYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIP--CDQ---IADQKEFLTEVQALT-EIRHRNIVKFYGFCSHAQHSFLV 702 (716)
Q Consensus 629 ~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~--~~~---~~~~~~~~~ei~~l~-~l~H~niv~l~g~~~~~~~~~lv 702 (716)
.+.+|.|..+.||+... ++..++||...+... ... ......+..|+..+. ...+..+.+++.+. ++..++|
T Consensus 39 i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv 115 (420)
T 2pyw_A 39 IKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIG 115 (420)
T ss_dssp EEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEE
T ss_pred EEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEE
Confidence 34688999999999974 467899995432111 000 002234555543332 22234455555554 5667999
Q ss_pred Eccc-CC
Q 041300 703 YEFL-ER 708 (716)
Q Consensus 703 ~Ey~-~~ 708 (716)
|||+ ++
T Consensus 116 ~e~l~~g 122 (420)
T 2pyw_A 116 MRYLEPP 122 (420)
T ss_dssp ECCCCTT
T ss_pred EeecCCc
Confidence 9999 76
No 438
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=51.20 E-value=11 Score=24.65 Aligned_cols=6 Identities=33% Similarity=0.501 Sum_probs=2.6
Q ss_pred Eechhh
Q 041300 565 VFPVLG 570 (716)
Q Consensus 565 v~~v~~ 570 (716)
..++++
T Consensus 13 A~gVVg 18 (44)
T 2l2t_A 13 AAGVIG 18 (44)
T ss_dssp HHHHHH
T ss_pred EEeehH
Confidence 344444
No 439
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.40 E-value=46 Score=26.29 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=20.3
Q ss_pred ccccCcccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcc
Q 041300 88 FFGTIPSQIGNLTKLSYISLDSNQLSGKIPAEVGLLTHLKVLSFQ 132 (716)
Q Consensus 88 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 132 (716)
++.+...+|.++++|+.+.|..+ ++.+...+|.++.+|+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 33344445555555555555443 232333444444445444444
No 440
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.25 E-value=41 Score=26.61 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=27.3
Q ss_pred ccCCCCCCCCCCCcEEECCCCCccccCcccccCCCCCCEEECcCC
Q 041300 66 TLRDFSFSSFPQLVHLDLSLNGFFGTIPSQIGNLTKLSYISLDSN 110 (716)
Q Consensus 66 ~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~N 110 (716)
.|...+|.++..|+.+.+..+ ++.+-..+|.++.+|+.+.+...
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 455566777777777766543 44455566777777777666543
No 441
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=39.39 E-value=34 Score=33.62 Aligned_cols=75 Identities=9% Similarity=0.069 Sum_probs=42.1
Q ss_pred ccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCC--ccccceE------EEeCCeeeE
Q 041300 630 YCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRN--IVKFYGF------CSHAQHSFL 701 (716)
Q Consensus 630 ~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~n--iv~l~g~------~~~~~~~~l 701 (716)
+.|+.|....+|+....+| .+++|...... ...++..|++++..++... +.+++.. ....+..++
T Consensus 28 ~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~------~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~ 100 (322)
T 2ppq_A 28 KGIAEGVENSNFLLHTTKD-PLILTLYEKRV------EKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAA 100 (322)
T ss_dssp EEECC---EEEEEEEESSC-CEEEEEECC---------CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEE
T ss_pred eccCCCcccceEEEEeCCc-cEEEEEeCCCC------CHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEE
Confidence 3466788889999987666 57788876521 1123556666666553222 2333321 123456789
Q ss_pred EEcccCCCCH
Q 041300 702 VYEFLERGSL 711 (716)
Q Consensus 702 v~Ey~~~GsL 711 (716)
||||++|..+
T Consensus 101 l~~~l~G~~~ 110 (322)
T 2ppq_A 101 LISFLEGMWL 110 (322)
T ss_dssp EEECCCCBCC
T ss_pred EEEeCCCcCC
Confidence 9999998653
No 442
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=33.89 E-value=33 Score=35.62 Aligned_cols=72 Identities=18% Similarity=0.318 Sum_probs=46.3
Q ss_pred ccccCCCceEEEEEEcCC--------CCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCc-cccceEEEeCCeee
Q 041300 630 YCIGNGGHGSVYRAELPS--------GEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNI-VKFYGFCSHAQHSF 700 (716)
Q Consensus 630 ~~ig~g~~g~v~~~~~~~--------~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~ni-v~l~g~~~~~~~~~ 700 (716)
+.|+.|--..+|+...++ +..+.+|+.... . ....+.+|..++..+...++ .++++.+. + .
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~---~---~~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--g 148 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP---E---TESHLVAESVIFTLLSERHLGPKLYGIFS--G--G 148 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC---C---CHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--E
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC---C---cHHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--C
Confidence 457778888999998753 467888887321 1 11345578888877743344 45555442 2 3
Q ss_pred EEEcccCCCCH
Q 041300 701 LVYEFLERGSL 711 (716)
Q Consensus 701 lv~Ey~~~GsL 711 (716)
+||||+++.++
T Consensus 149 ~v~e~l~G~~l 159 (429)
T 1nw1_A 149 RLEEYIPSRPL 159 (429)
T ss_dssp EEECCCCEEEC
T ss_pred EEEEEeCCccc
Confidence 89999986443
No 443
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=32.82 E-value=30 Score=34.30 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=36.6
Q ss_pred ccCCCceE-EEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCC--CCccccceEEEeCCeeeEEEcccCC
Q 041300 632 IGNGGHGS-VYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRH--RNIVKFYGFCSHAQHSFLVYEFLER 708 (716)
Q Consensus 632 ig~g~~g~-v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H--~niv~l~g~~~~~~~~~lv~Ey~~~ 708 (716)
++.|+... +|+....++..+++|....... .++..|+.++..+.. -.+.+++.+.... -++|||++.+
T Consensus 26 l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~-------~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~--g~ll~e~l~~ 96 (333)
T 3csv_A 26 LAGDASSRRYQRLRSPTGAKAVLMDWSPEEG-------GDTQPFVDLAQYLRNLDISAPEIYAEEHAR--GLLLIEDLGD 96 (333)
T ss_dssp --------CCEEEECTTCCEEEEEECCTTTT-------CCSHHHHHHHHHHHHTTCBCCCEEEEETTT--TEEEECCCCS
T ss_pred CCCCCCCceEEEEEcCCCCeEEEEECCCCCC-------ccccHHHHHHHHHHhCCCCCCceeeecCCC--CEEEEeeCCC
Confidence 44444333 6677654466777776543210 123445555555532 2344556553222 3789999987
Q ss_pred CCHHhH
Q 041300 709 GSLAAI 714 (716)
Q Consensus 709 GsL~~~ 714 (716)
..+.++
T Consensus 97 ~~l~~~ 102 (333)
T 3csv_A 97 ALFTEV 102 (333)
T ss_dssp CBHHHH
T ss_pred cchHHH
Confidence 766554
No 444
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=26.16 E-value=1.1e+02 Score=30.33 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=40.5
Q ss_pred cCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCC---CCCccccceE------EEeCCeeeEEE
Q 041300 633 GNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIR---HRNIVKFYGF------CSHAQHSFLVY 703 (716)
Q Consensus 633 g~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~---H~niv~l~g~------~~~~~~~~lv~ 703 (716)
|.|....||+....+| .+++|+...... .+|++++..+. -|.+++.+.. ....+..++||
T Consensus 32 G~g~~N~vy~v~~~~g-~~vLK~~~~~~~----------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~ 100 (339)
T 3i1a_A 32 GADTNAFAYQADSESK-SYFIKLKYGYHD----------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAY 100 (339)
T ss_dssp TSCSSCEEEEEECSSC-EEEEEEEECSSC----------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEE
T ss_pred cCccccceEEEEeCCC-CEEEEEecCccc----------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEE
Confidence 3444678999987677 889998765321 12333333331 1224444322 23356779999
Q ss_pred cccCCCCH
Q 041300 704 EFLERGSL 711 (716)
Q Consensus 704 Ey~~~GsL 711 (716)
||++|..+
T Consensus 101 ~~i~G~~~ 108 (339)
T 3i1a_A 101 PFIHAPNG 108 (339)
T ss_dssp ECCCCCBT
T ss_pred eccCCCcC
Confidence 99998765
No 445
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=24.48 E-value=81 Score=30.50 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=40.7
Q ss_pred cccccCCCceEEEEEEcCCCCEEEEEEccccCCccchhhHHHHHHHHHHHhcCCCCCcc-ccceEEEeCCeeeEEEccc-
Q 041300 629 EYCIGNGGHGSVYRAELPSGEVVAVKKFHSSIPCDQIADQKEFLTEVQALTEIRHRNIV-KFYGFCSHAQHSFLVYEFL- 706 (716)
Q Consensus 629 ~~~ig~g~~g~v~~~~~~~~~~vavK~l~~~~~~~~~~~~~~~~~ei~~l~~l~H~niv-~l~g~~~~~~~~~lv~Ey~- 706 (716)
.+.++.|....+|+. ..+.+|+-..... .. ....+|..++..+....+. +++++ .++.-++|+||+
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~-~~----~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~ 90 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTE-EY----INRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIA 90 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC-----C----CCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCT
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCcc-ce----eCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecC
Confidence 566888999999998 3477787654210 00 1124566666665433333 44433 444468999999
Q ss_pred CCCC
Q 041300 707 ERGS 710 (716)
Q Consensus 707 ~~Gs 710 (716)
++-+
T Consensus 91 ~g~~ 94 (301)
T 3dxq_A 91 GAQT 94 (301)
T ss_dssp TCEE
T ss_pred CCcc
Confidence 5433
Done!