Query 041301
Match_columns 291
No_of_seqs 114 out of 1043
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00946 2a69 he Auxin Efflux 100.0 1.1E-38 2.4E-43 290.9 24.3 267 1-291 1-275 (321)
2 PRK09903 putative transporter 100.0 4.5E-38 9.8E-43 285.8 26.1 256 9-291 4-265 (314)
3 COG0679 Predicted permeases [G 100.0 4E-37 8.8E-42 278.8 27.1 260 7-291 2-262 (311)
4 PF03547 Mem_trans: Membrane t 100.0 2.2E-35 4.7E-40 275.3 24.1 279 10-291 2-343 (385)
5 KOG2722 Predicted membrane pro 99.9 3.8E-24 8.3E-29 190.0 4.2 272 2-276 2-336 (408)
6 COG3329 Predicted permease [Ge 97.6 0.039 8.4E-07 49.2 21.5 225 16-249 18-271 (372)
7 PF05982 DUF897: Domain of unk 97.6 0.028 6.1E-07 50.8 20.5 250 16-283 1-265 (327)
8 PF05684 DUF819: Protein of un 96.8 0.27 5.8E-06 46.0 19.6 68 12-80 23-93 (378)
9 TIGR00841 bass bile acid trans 96.1 0.11 2.3E-06 46.8 11.9 79 68-149 194-272 (286)
10 TIGR00841 bass bile acid trans 96.0 0.014 3E-07 52.5 5.9 63 228-290 11-74 (286)
11 TIGR00832 acr3 arsenical-resis 96.0 0.044 9.6E-07 50.2 9.1 94 187-287 5-107 (328)
12 COG0385 Predicted Na+-dependen 95.9 0.036 7.8E-07 50.2 7.8 75 214-289 28-103 (319)
13 COG1346 LrgB Putative effector 93.6 0.48 1E-05 40.7 8.3 97 186-287 28-124 (230)
14 TIGR00783 ccs citrate carrier 92.9 7.6 0.00017 35.8 22.1 246 31-285 6-297 (347)
15 PF03601 Cons_hypoth698: Conse 92.8 7.4 0.00016 35.3 16.4 213 10-255 86-301 (305)
16 PRK10711 hypothetical protein; 92.2 0.77 1.7E-05 39.8 7.8 96 187-287 27-122 (231)
17 PF04172 LrgB: LrgB-like famil 91.8 1.2 2.7E-05 38.2 8.6 97 186-287 15-111 (215)
18 PF01758 SBF: Sodium Bile acid 91.8 0.31 6.7E-06 40.8 4.9 58 231-288 4-63 (187)
19 PRK04288 antiholin-like protei 91.3 1.5 3.3E-05 38.0 8.6 96 187-287 32-127 (232)
20 PF03390 2HCT: 2-hydroxycarbox 90.6 16 0.00034 34.6 25.8 263 16-286 62-365 (414)
21 TIGR00659 conserved hypothetic 90.5 1.7 3.7E-05 37.6 8.2 95 187-286 26-120 (226)
22 COG0385 Predicted Na+-dependen 89.3 17 0.00037 33.1 18.6 192 68-291 66-260 (319)
23 PF13593 DUF4137: SBF-like CPA 88.7 11 0.00023 34.4 12.5 110 16-129 166-283 (313)
24 TIGR00783 ccs citrate carrier 87.5 3 6.5E-05 38.4 8.0 100 17-118 207-315 (347)
25 PF03601 Cons_hypoth698: Conse 86.7 4.3 9.3E-05 36.9 8.6 90 190-285 25-115 (305)
26 PF13593 DUF4137: SBF-like CPA 85.5 1.8 4E-05 39.4 5.6 83 192-279 1-86 (313)
27 PRK12460 2-keto-3-deoxyglucona 78.9 49 0.0011 30.1 12.0 81 194-284 169-249 (312)
28 TIGR00844 c_cpa1 na(+)/h(+) an 76.8 20 0.00044 36.8 9.8 89 188-282 35-130 (810)
29 COG5505 Predicted integral mem 76.7 60 0.0013 29.6 12.3 135 14-153 31-172 (384)
30 PRK03659 glutathione-regulated 73.9 18 0.0004 36.0 8.8 84 192-283 238-321 (601)
31 PF03812 KdgT: 2-keto-3-deoxyg 68.6 27 0.00059 31.7 7.7 86 194-283 15-101 (314)
32 PRK03562 glutathione-regulated 65.0 34 0.00073 34.3 8.5 66 217-284 260-325 (621)
33 KOG2532 Permease of the major 61.8 31 0.00066 33.3 7.3 40 185-224 250-290 (466)
34 TIGR00698 conserved hypothetic 61.3 45 0.00098 30.7 7.9 90 191-285 31-121 (335)
35 TIGR00932 2a37 transporter, mo 59.5 97 0.0021 27.1 9.7 89 185-282 10-101 (273)
36 PRK12585 putative monovalent c 58.6 48 0.001 27.9 6.8 84 198-282 13-99 (197)
37 TIGR00698 conserved hypothetic 56.4 1.7E+02 0.0036 27.1 21.7 65 191-261 250-315 (335)
38 PF03390 2HCT: 2-hydroxycarbox 56.0 85 0.0018 29.8 8.9 88 29-117 285-381 (414)
39 PRK03562 glutathione-regulated 55.2 49 0.0011 33.2 7.7 86 190-282 27-113 (621)
40 TIGR00832 acr3 arsenical-resis 52.5 1.9E+02 0.004 26.5 22.6 96 194-291 184-283 (328)
41 PRK10669 putative cation:proto 48.4 1E+02 0.0022 30.4 8.6 83 192-282 249-331 (558)
42 PF10766 DUF2592: Protein of u 46.2 40 0.00087 20.5 3.3 24 184-207 4-27 (41)
43 COG4389 Site-specific recombin 45.7 55 0.0012 31.5 5.8 66 115-194 590-659 (677)
44 PF03956 DUF340: Membrane prot 44.7 80 0.0017 26.5 6.3 43 196-246 3-45 (191)
45 COG2855 Predicted membrane pro 44.1 83 0.0018 28.9 6.6 86 192-284 38-123 (334)
46 PRK10669 putative cation:proto 42.8 1.3E+02 0.0028 29.6 8.5 85 190-281 28-113 (558)
47 PRK12460 2-keto-3-deoxyglucona 42.5 78 0.0017 28.8 6.2 86 195-283 16-101 (312)
48 COG1593 DctQ TRAP-type C4-dica 41.2 3.1E+02 0.0067 25.8 12.7 47 194-244 234-286 (379)
49 PRK03659 glutathione-regulated 40.1 1.8E+02 0.0038 29.1 8.9 86 190-282 27-113 (601)
50 TIGR03802 Asp_Ala_antiprt aspa 39.8 1.4E+02 0.003 29.7 8.0 78 196-285 40-119 (562)
51 PRK12586 putative monovalent c 36.8 1.8E+02 0.0038 23.4 6.7 80 196-276 14-93 (145)
52 COG3329 Predicted permease [Ge 36.5 3.1E+02 0.0067 25.1 8.8 90 186-285 12-103 (372)
53 PF03977 OAD_beta: Na+-transpo 36.5 3.5E+02 0.0076 25.0 11.9 87 43-131 63-153 (360)
54 TIGR00807 malonate_madL malona 35.5 2.1E+02 0.0045 22.2 7.6 76 15-94 38-117 (125)
55 COG3493 CitS Na+/citrate sympo 35.1 3.6E+02 0.0078 25.5 9.2 97 19-117 295-400 (438)
56 PRK12671 putative monovalent c 34.2 2.2E+02 0.0048 22.1 7.3 79 198-277 19-97 (120)
57 PF03334 PhaG_MnhG_YufB: Na+/H 33.2 1.8E+02 0.0039 20.7 7.3 61 213-276 17-77 (81)
58 PRK05326 potassium/proton anti 32.5 2.1E+02 0.0045 28.2 8.1 87 190-282 28-117 (562)
59 PLN03159 cation/H(+) antiporte 32.2 6.1E+02 0.013 26.5 11.8 84 190-278 65-157 (832)
60 COG5546 Small integral membran 30.7 60 0.0013 22.8 2.7 36 190-225 8-46 (80)
61 PRK12675 putative monovalent c 30.4 2.4E+02 0.0052 21.2 7.8 77 198-276 7-83 (104)
62 PF11299 DUF3100: Protein of u 30.3 2.3E+02 0.0049 24.8 6.8 92 188-283 18-113 (241)
63 COG2211 MelB Na+/melibiose sym 30.3 5.2E+02 0.011 25.1 16.6 27 181-207 224-250 (467)
64 PLN03159 cation/H(+) antiporte 29.8 5.9E+02 0.013 26.7 11.0 46 18-65 297-342 (832)
65 COG3493 CitS Na+/citrate sympo 29.7 4.9E+02 0.011 24.6 20.7 76 19-96 82-165 (438)
66 COG2991 Uncharacterized protei 29.6 54 0.0012 22.9 2.3 23 7-29 4-26 (77)
67 PRK12670 putative monovalent c 29.2 2.4E+02 0.0053 21.0 6.5 77 198-277 10-86 (99)
68 COG2271 UhpC Sugar phosphate p 28.8 5.3E+02 0.012 24.8 9.6 26 182-207 241-266 (448)
69 PRK05326 potassium/proton anti 28.7 3.2E+02 0.007 26.9 8.7 84 192-281 245-329 (562)
70 PRK03818 putative transporter; 28.0 3.3E+02 0.0072 26.9 8.5 85 196-284 35-121 (552)
71 COG2855 Predicted membrane pro 27.8 4.9E+02 0.011 24.0 17.2 61 192-257 253-313 (334)
72 TIGR00793 kdgT 2-keto-3-deoxyg 26.6 1.4E+02 0.0029 27.2 5.0 55 226-282 46-100 (314)
73 PF10762 DUF2583: Protein of u 26.3 2.5E+02 0.0053 20.4 5.2 59 186-246 9-67 (89)
74 PRK10692 hypothetical protein; 25.5 2.7E+02 0.0058 20.3 5.5 59 186-246 9-67 (92)
75 COG4956 Integral membrane prot 25.1 5.4E+02 0.012 23.6 11.1 47 195-246 85-133 (356)
76 COG1906 Uncharacterized conser 25.0 5.5E+02 0.012 23.7 8.8 24 115-138 315-339 (388)
77 PRK09546 zntB zinc transporter 23.9 2.5E+02 0.0054 25.4 6.4 24 43-66 267-290 (324)
78 PRK12587 putative monovalent c 23.8 3.4E+02 0.0075 20.9 8.5 80 197-277 13-92 (118)
79 PRK12674 putative monovalent c 22.8 3.2E+02 0.007 20.2 7.6 78 197-277 10-87 (99)
80 TIGR00383 corA magnesium Mg(2+ 22.6 2.2E+02 0.0047 25.5 5.8 23 44-66 262-284 (318)
81 TIGR03082 Gneg_AbrB_dup membra 21.4 4.3E+02 0.0093 21.1 8.0 83 194-284 23-107 (156)
82 PF03817 MadL: Malonate transp 21.3 4E+02 0.0086 20.7 7.6 76 15-94 38-117 (125)
83 TIGR01625 YidE_YbjL_dupl AspT/ 20.9 4.5E+02 0.0098 21.2 9.2 85 197-284 27-116 (154)
84 COG0786 GltS Na+/glutamate sym 20.7 7.3E+02 0.016 23.5 20.5 86 195-284 252-338 (404)
No 1
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=100.00 E-value=1.1e-38 Score=290.85 Aligned_cols=267 Identities=25% Similarity=0.326 Sum_probs=213.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHhHhh-hhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCCCC--Cc-chhHHHHHH
Q 041301 1 MIGWEDVYKVIVAMVPLYFALILGYGS-VKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPF--NM-NYRFIGADA 76 (291)
Q Consensus 1 ~~~~~~~~~vl~~vl~i~~li~iG~~~-~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~~~--~~-~~~~l~~~~ 76 (291)
|+.|+ +++.++|+++++++||++ +| +|++++++.+.++++++|+++||++|.++.+.+.+ +. .+.......
T Consensus 1 ~~~~~----~~~~ilpv~~ii~lG~~~~~r-~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~ 75 (321)
T TIGR00946 1 MITYV----ILETVLPILVVILLGYILGKR-FGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLW 75 (321)
T ss_pred CccHH----HHHHHHHHHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 457899999999999999 56 79999999999999999999999999999987664 22 334333333
Q ss_pred HHHHHHHHHHHHHHH-hhcCCccchhhhhhhhhccccccccchHHHHHHhhcccc---hhHHHHHHHHHHHHHHHHHHHH
Q 041301 77 ISKLIIVIVLAFWGM-CSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMA---VDLVVQSSVFQSIVWFTIFLFI 152 (291)
Q Consensus 77 ~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~---~~~~~~~~~~~~~~~~~~~~~~ 152 (291)
.+....+++++..+| ..+++ ++++.... .+++++|++|+|+|+++++|||++ ..++..++..+.+..|++++.+
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~-~~~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (321)
T TIGR00946 76 GAFSGSYALIWLITKPLFKAD-YGKLSGFL-LVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFL 153 (321)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-cchhhHHH-HHhhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHH
Confidence 445556777777777 44444 33433333 338999999999999999999999 6777878888889999999876
Q ss_pred HHhhhccCcccccccCCCCCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhH
Q 041301 153 LEFRRAGNALEDLEEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTG 232 (291)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~p 232 (291)
.+...+++++ ++.+.++..++.++++++||+++|+++|++++.+ |+++|+++.++++.+|++++|
T Consensus 154 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~~~p 218 (321)
T TIGR00946 154 VSEDGAGGEG-----------SGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGATTP 218 (321)
T ss_pred hccccccccc-----------cchhHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHHHHH
Confidence 6432110000 0112233456778999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhccccC
Q 041301 233 TAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ 291 (291)
Q Consensus 233 laL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~~~vl~ 291 (291)
++|+++|++++.++ .+++++..+..++.|+++.|+++++++.+++++++..+++++|
T Consensus 219 laLl~lG~~l~~~~--~~~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~ 275 (321)
T TIGR00946 219 MALFSLGLALSPRK--IKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQ 275 (321)
T ss_pred HHHHHHHHhhChhh--hccChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 99999999997544 4456788899999999999999999999999999999988764
No 2
>PRK09903 putative transporter YfdV; Provisional
Probab=100.00 E-value=4.5e-38 Score=285.82 Aligned_cols=256 Identities=19% Similarity=0.290 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCCCCCc--chhHHHHHHHHHHHHHHHH
Q 041301 9 KVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM--NYRFIGADAISKLIIVIVL 86 (291)
Q Consensus 9 ~vl~~vl~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~~~~~--~~~~l~~~~~~~~i~~~~~ 86 (291)
..++.++|+++++++||+++| +|.++|++.+.+|++++|+++||++|.++.+.+.++. ++.......++.+..++++
T Consensus 4 ~~~~~ilpif~ii~lG~~~~r-~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 4 FFIGDLLPIIVIMLLGYFSGR-RETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 467889999999999999976 7999999999999999999999999999998865432 4555544445555566666
Q ss_pred HHHHH-hhcCCccchhhhhhhhhccccccccchHHHHHHhhccc---chhHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 041301 87 AFWGM-CSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQM---AVDLVVQSSVFQSIVWFTIFLFILEFRRAGNAL 162 (291)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (291)
+..++ ..+++ +.+.....+. ++++|+||+|+|+++++||++ ++.++..+ ..++.+.|++++..++..++++
T Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~-~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~-~~~~~~~~~~g~~~~~~~~~~~-- 157 (314)
T PRK09903 83 WFGCYKFFKRT-HAEAAVCALI-AGSPTIGFLGFAVLDPIYGDSVSTGLVVAIIS-IIVNAITIPIGLYLLNPSSGAD-- 157 (314)
T ss_pred HHHHHHHhcCC-cchhhHhhhh-hcCCCcccccHHHHHHHcCchhhhhhHHHHHH-HHHHHHHHHHHHHHHccccccc--
Confidence 66665 33443 3333333344 788999999999999999999 55555544 4577889999999887533210
Q ss_pred cccccCCCCCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHh
Q 041301 163 EDLEEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFM 242 (291)
Q Consensus 163 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L 242 (291)
++.+ ..++.+++++|||+++|+++|++++++ |+++|+++.++++++|++++|++|+++|+++
T Consensus 158 -----------~~~~---~~~~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L 219 (314)
T PRK09903 158 -----------GKKN---SNLSALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPTFNLIAKANSGVAVFAAGLTL 219 (314)
T ss_pred -----------cccc---hHHHHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 134678889999999999999999999 9999999999999999999999999999999
Q ss_pred hhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhccccC
Q 041301 243 ALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ 291 (291)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~~~vl~ 291 (291)
+..+ .+. .++.+..++.|+++.|+++++++.++|+|+.+.+++++|
T Consensus 220 ~~~~--~~~-~~~~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~vl~ 265 (314)
T PRK09903 220 AAHK--FEF-SAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLA 265 (314)
T ss_pred hhcc--ccc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 8654 222 356788899999999999999999999999999998875
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=100.00 E-value=4e-37 Score=278.78 Aligned_cols=260 Identities=21% Similarity=0.365 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCCCCCc-chhHHHHHHHHHHHHHHH
Q 041301 7 VYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM-NYRFIGADAISKLIIVIV 85 (291)
Q Consensus 7 ~~~vl~~vl~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~~~~~-~~~~l~~~~~~~~i~~~~ 85 (291)
+..++..++|+++++++||+++| .+.++++..+.+|++++|+++||++|+++.+.+.++. ++..+.....+.+..++.
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~r-~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLKR-FGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL 80 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999976 7999999999999999999999999999999988765 677666666677777777
Q ss_pred HHHHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCccccc
Q 041301 86 LAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDL 165 (291)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (291)
.+..+|+.+++++++..... .++.++|++++|+|+....|||+++.++++++..+++..++++.+.++..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~------ 153 (311)
T COG0679 81 LALIGRFLFKLDKRETVIFA-LASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGG------ 153 (311)
T ss_pred HHHHHHHHhccchhhHHHHH-HHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 77777654433233222332 33899999999999999999999999999999999999999999999865542
Q ss_pred ccCCCCCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhh
Q 041301 166 EEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQ 245 (291)
Q Consensus 166 ~~~~~~s~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~ 245 (291)
+. +..++..|++++||+++|.++|++++.. ++++|+++.++.+++|++++|++|+++|++|+..
T Consensus 154 ---------~~---~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~ 217 (311)
T COG0679 154 ---------TN---KSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDLLASAASPLALIALGLSLAFL 217 (311)
T ss_pred ---------ch---hHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchh
Confidence 11 2367788999999999999999999999 9999999999999999999999999999999864
Q ss_pred hhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhccccC
Q 041301 246 EKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ 291 (291)
Q Consensus 246 ~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~~~vl~ 291 (291)
+ ..+...+........|++++|++++...+.+|++++..++++++
T Consensus 218 ~-~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~ 262 (311)
T COG0679 218 K-LKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLL 262 (311)
T ss_pred h-hccccchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 3 22233455556666699999999999999999999999888764
No 4
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=2.2e-35 Score=275.34 Aligned_cols=279 Identities=24% Similarity=0.321 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCC-CCCc-chhHHHHH-HHHHHHHHHHH
Q 041301 10 VIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVD-PFNM-NYRFIGAD-AISKLIIVIVL 86 (291)
Q Consensus 10 vl~~vl~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~-~~~~-~~~~l~~~-~~~~~i~~~~~ 86 (291)
++++++|+++++++||+++| +|++++++.+.++++++|+++||++|.++++.+ .++. +++++... .+...+.++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~~-~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLGR-FGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG 80 (385)
T ss_pred cHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999977 699999999999999999999999999999874 3333 55544332 33344455556
Q ss_pred HHHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcc----
Q 041301 87 AFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNAL---- 162 (291)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 162 (291)
+.+.|+.+.+ +.++... ..+++++|++++|+|+++++||+++..|+.++++++.+..|+++..+++..++++++
T Consensus 81 ~~~~~~~~~~-~~~~~~~-~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~ 158 (385)
T PF03547_consen 81 FLLSRLFRLP-KEWRGVF-VLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE 158 (385)
T ss_pred HHHHHhcCCC-cccceEE-EecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence 6666755444 2222222 244899999999999999999999999999999999999999999999865432100
Q ss_pred c-----------cc-----ccCC----------CC--------CC-------C----C-----------ChhHHHHHHHH
Q 041301 163 E-----------DL-----EEGH----------AT--------SS-------S----R-----------PSFWHLMKVVW 186 (291)
Q Consensus 163 ~-----------~~-----~~~~----------~~--------s~-------~----~-----------~~~~~~~~~~~ 186 (291)
+ |. |+++ ++ ++ + + ...++..++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (385)
T PF03547_consen 159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKSSNSTRKKLKKSI 238 (385)
T ss_pred ccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhhhhhhHHHHHHHHH
Confidence 0 00 0000 00 00 0 0 01123345677
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHH
Q 041301 187 LKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIA 266 (291)
Q Consensus 187 ~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~ 266 (291)
++.++||+++|.++|+++++.+......+|+++.++++++|++++|++|+++|++++..++....+++.....++.|+++
T Consensus 239 ~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii 318 (385)
T PF03547_consen 239 LKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLII 318 (385)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHH
Confidence 88899999999999999999933333334499999999999999999999999999865432234566666789999999
Q ss_pred HHHHHHHHHHHhCCCccchhccccC
Q 041301 267 GPAAMAIGSIATGLRGDVLRVSIIQ 291 (291)
Q Consensus 267 ~Pli~~~~~~~~~l~~~~~~~~vl~ 291 (291)
.|++++++++.++++++..++.++|
T Consensus 319 ~P~i~~~~~~~~~l~~~~~~~~~~~ 343 (385)
T PF03547_consen 319 LPLIGIGIVFLLGLDGDMARVLILQ 343 (385)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 9999999999999999888877654
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=99.89 E-value=3.8e-24 Score=189.97 Aligned_cols=272 Identities=14% Similarity=0.148 Sum_probs=195.0
Q ss_pred ccHHHHHHHHH---HHHHHHHHHHHhHhhhhh-ccccChhhhHHHHHHHHHHHhHHHHHHHhccC-CCCCc-chhHHHHH
Q 041301 2 IGWEDVYKVIV---AMVPLYFALILGYGSVKW-WKIIAPEECAAINRLVCYFTLPLFTIEFTTHV-DPFNM-NYRFIGAD 75 (291)
Q Consensus 2 ~~~~~~~~vl~---~vl~i~~li~iG~~~~r~-~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~-~~~~~-~~~~l~~~ 75 (291)
..+-++.++.+ .++.++++..+||+++++ .++++++.+|.+|+++++++.||++|..++++ +.+++ +||++...
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 33444444444 678889999999999852 38999999999999999999999999999987 77775 89988664
Q ss_pred -HHHHHHHHHHHHHHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhhcc-------------cchhHHHHHHHHH
Q 041301 76 -AISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQ-------------MAVDLVVQSSVFQ 141 (291)
Q Consensus 76 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~-------------~~~~~~~~~~~~~ 141 (291)
.+...+..+++|+..++.+.+++.+..+ ..+|+++|.|++.+.++.++..+ .|+.|+.+.....
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fi--ia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg 159 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFI--IACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLG 159 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeE--EEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhh
Confidence 3556677778888888876653433332 34599999999999999999633 2789999999888
Q ss_pred HHHHHHHHHHHHHhhhccC----ccccc------------ccCCCC------------------CCC-CChh---HHHHH
Q 041301 142 SIVWFTIFLFILEFRRAGN----ALEDL------------EEGHAT------------------SSS-RPSF---WHLMK 183 (291)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~----~~~~~------------~~~~~~------------------s~~-~~~~---~~~~~ 183 (291)
.+..|++++-++....... +++++ |.|+|+ +++ +.++ .-..+
T Consensus 160 ~il~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~~~~~~g~~~~~~~~~~~~~~~ 239 (408)
T KOG2722|consen 160 QILRWTYVYRMLLPPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKENRNNQVVGREGKVKRRSVSLSEK 239 (408)
T ss_pred hhEEEEEEeeeecCCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccccCCCceeeccccceEEEeehhHH
Confidence 8999998887554321100 00000 111110 010 1110 11123
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHhhhc----cCCCcC-hhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHH
Q 041301 184 VVWLKLAKNPNSYACVIGLAWAFVANR----WHFKMP-SIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAF 258 (291)
Q Consensus 184 ~~~~~~~~nP~~ia~i~gli~~~~~~~----~~~~~P-~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~ 258 (291)
..+++++ +|+++|.++|+++...++. ++-.-| +++.++.+.+|+.++|+.++++|..|....++...+.+.++.
T Consensus 240 ~~L~~i~-~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iig 318 (408)
T KOG2722|consen 240 VILKEIF-APPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIG 318 (408)
T ss_pred hhHHHhc-CchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEEE
Confidence 4455554 9999999999999988642 333334 699999999999999999999999997554333344566677
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041301 259 GMVLKFIAGPAAMAIGSI 276 (291)
Q Consensus 259 ~~~~kli~~Pli~~~~~~ 276 (291)
.++.|+++.|.++.++..
T Consensus 319 iii~R~illP~~gl~iv~ 336 (408)
T KOG2722|consen 319 IIIGRYILLPLVGLGIVR 336 (408)
T ss_pred EEEeeeeccchhhHHHHH
Confidence 888999999999987753
No 6
>COG3329 Predicted permease [General function prediction only]
Probab=97.62 E-value=0.039 Score=49.17 Aligned_cols=225 Identities=13% Similarity=0.049 Sum_probs=115.7
Q ss_pred HHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCCCCCc---chhHHHHHHHHHHHHHHHHHHHHHh
Q 041301 16 PLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKLIIVIVLAFWGMC 92 (291)
Q Consensus 16 ~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~ 92 (291)
|..+....|.+..- .| -|-+.-+.+.+-+....+=|.=|+.=.+...+++ -........++.++.+..-+.++|+
T Consensus 18 P~llFf~~Gmlia~-~k-sdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l~kl 95 (372)
T COG3329 18 PTLLFFILGMLIAA-FK-SDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLRKL 95 (372)
T ss_pred chHHHHHHHHHHHH-Hh-ccccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77888888888753 33 2223334444444444444444443222221222 2222233334444444444455555
Q ss_pred hcCCccchhhhhhhhhccccccccchHHHHHHhhcccchhH---HHHHHHHHHHHHHHHHHHHHHhhhccC---------
Q 041301 93 SKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDL---VVQSSVFQSIVWFTIFLFILEFRRAGN--------- 160 (291)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 160 (291)
.+-+ ..++..++ ..|+...---+.-..+..-+.+.+| +......-..-....+..+.+.+..++
T Consensus 96 ~~vd-tvdaaA~a---g~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lalMeiPallval~l~~~y~~~~k~s~aa~~~ 171 (372)
T COG3329 96 PKVD-TVDAAATA---GTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLALMEIPALLVALVLANIYLNDEKRSAAAEAH 171 (372)
T ss_pred cccc-hHHHHHHH---hhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHHhhchHHHHHHHHHHHHHhccccccccccc
Confidence 4433 22322221 5666666666666666665555443 333333333223333444443221111
Q ss_pred ccccc-c---cCCC--C-------C-CCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHh
Q 041301 161 ALEDL-E---EGHA--T-------S-SSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIM 226 (291)
Q Consensus 161 ~~~~~-~---~~~~--~-------s-~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l 226 (291)
+++-+ + +.++ + | +...+.+-..|+.+++.+.||-+..++.|+++.+. .|-+--+.+.+..+-+
T Consensus 172 s~~~vA~~e~g~~~d~~ssr~~~~~~~~~ed~~v~~~ell~Esflnpal~lllggl~iGli---tGe~g~~vl~~F~~~l 248 (372)
T COG3329 172 SKQLVAAGEYGDQTDLASSRQEYLSPQWGEDNRVKIWELLQESFLNPALVLLLGGLAIGLI---TGEQGESVLKPFFDPL 248 (372)
T ss_pred cccchhhcccCchhhhhhhhhhhcccccCcccchhhHHHHHHHHcCchHHHHHHHHHHhhe---eccCchhhhhhhhHHH
Confidence 11111 0 1111 0 1 01111122367889999999999999999999988 2333335667777888
Q ss_pred hhhhhHHHHHHHhHHhhhhhhhh
Q 041301 227 SKAGTGTAMFSMGIFMALQEKLL 249 (291)
Q Consensus 227 ~~~~~plaL~~lG~~L~~~~~~~ 249 (291)
=+....+-|+.+|+.-..+-++.
T Consensus 249 FqGvL~lflL~MGm~A~rrl~el 271 (372)
T COG3329 249 FQGVLCLFLLDMGMTAGRRLKEL 271 (372)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 88999999999999876554443
No 7
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=97.57 E-value=0.028 Score=50.81 Aligned_cols=250 Identities=14% Similarity=0.029 Sum_probs=122.1
Q ss_pred HHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHH---hccCCCCCcchhHHHHHHHHHHHHHHHHHHHH-H
Q 041301 16 PLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEF---TTHVDPFNMNYRFIGADAISKLIIVIVLAFWG-M 91 (291)
Q Consensus 16 ~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~---l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~-~ 91 (291)
|..+....|.+++. .| =|-+.-+.+.+++--..+=+.=|+. +.++++++..+..+.+..++.++- +.++.+. |
T Consensus 1 P~vLFF~LG~~A~~-~k-SdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liP-l~~~~iLr~ 77 (327)
T PF05982_consen 1 PVVLFFILGIIAAL-LK-SDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIP-LIAFPILRR 77 (327)
T ss_pred CchHHHHHHHHHHH-Hc-CCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44566677777653 22 2333344455544444433333332 223232221122222222333222 2233333 3
Q ss_pred hhcCCccchhhhhhhhhccccccccchHHHHHHhhcccch---hHHHHHHHHHHHHHHHHHHHHHHhhhccCcc-ccccc
Q 041301 92 CSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAV---DLVVQSSVFQSIVWFTIFLFILEFRRAGNAL-EDLEE 167 (291)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 167 (291)
+.|-+ +.+.. ++. +.|+...-.-+....+...++++ .|+..+...-+.-...+++.+....+.++++ ++.++
T Consensus 78 ~~~l~-~~daa--AiA-AhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L~~~~~~~~~~~~~~~~ 153 (327)
T PF05982_consen 78 LGKLD-RADAA--AIA-AHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLLARLFSRKQAAGATASS 153 (327)
T ss_pred ccCCC-hhhHH--HHH-HHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHHHHhccccccccCCc
Confidence 33333 33332 222 56666666666666666655544 4444455555555556677776543332111 11111
Q ss_pred CC--CC-CCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhh
Q 041301 168 GH--AT-SSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMAL 244 (291)
Q Consensus 168 ~~--~~-s~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~ 244 (291)
+. .. ++++.+ +++.+++.++|+-++..+.|+++.+.. +-+=-+.+......+=+....+-|+-+|+.-+.
T Consensus 154 ~~~~~~~~~~~~~----~~~~l~E~l~~~sv~LLlGgliIG~~~---g~~g~~~i~pf~~~lF~G~L~lFLLeMGl~A~~ 226 (327)
T PF05982_consen 154 TRVGAGSGHEGIS----WGELLHESLTNKSVVLLLGGLIIGFLA---GPEGVESIKPFFVDLFKGVLCLFLLEMGLVAAR 226 (327)
T ss_pred ccccccccccccc----HHHHHHHHHcCchHHHHHHHHHHhhee---CccchhhccchhhccHHHHHHHHHHHhhHHHHH
Confidence 11 00 122333 788899999999999999999998872 211112233344444445555666666665543
Q ss_pred hhhhhhcCchHHHHHHHHHHHHHHHH----HHHHHHHhCCCcc
Q 041301 245 QEKLLACGPSLTAFGMVLKFIAGPAA----MAIGSIATGLRGD 283 (291)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~kli~~Pli----~~~~~~~~~l~~~ 283 (291)
+-++ .|+..+..+.==+++|++ +..+.++.|++.-
T Consensus 227 rL~~----l~~~g~~li~Fgi~~Pli~a~ig~~lg~~~gls~G 265 (327)
T PF05982_consen 227 RLRD----LRKVGWFLIAFGILMPLINALIGIGLGWLLGLSPG 265 (327)
T ss_pred hhHH----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3222 344444444444567765 4455677787654
No 8
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=96.82 E-value=0.27 Score=46.03 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCCCCCc---chhHHHHHHHHHH
Q 041301 12 VAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKL 80 (291)
Q Consensus 12 ~~vl~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~~~~~---~~~~l~~~~~~~~ 80 (291)
..+=|..+.++.|.++.- .|+++......+.+.+....+|..++.-+.+.|+.++ ..+.+..++++.+
T Consensus 23 ~~l~~~vl~~~~~~~lsn-lgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~ 93 (378)
T PF05684_consen 23 KYLPGAVLCYLLGMLLSN-LGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAV 93 (378)
T ss_pred hhcCHHHHHHHHHHHHHH-CCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHH
Confidence 344477888899999976 8988656667899999999999999999999998753 5566666554443
No 9
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.08 E-value=0.11 Score=46.77 Aligned_cols=79 Identities=4% Similarity=-0.061 Sum_probs=48.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 041301 68 NYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFT 147 (291)
Q Consensus 68 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~ 147 (291)
.+....+..+...+.|.+++.++|..+.+.+++++ .++. ++..|++ +|+++....|+++....+..|.+.+.+....
T Consensus 194 ~~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t-~~~~-~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~ 270 (286)
T TIGR00841 194 GPLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRT-ISIE-VGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLA 270 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhhee-eeee-eecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 34444444455667788888888875544122222 2233 6778887 9999999999866555455565555544443
Q ss_pred HH
Q 041301 148 IF 149 (291)
Q Consensus 148 ~~ 149 (291)
++
T Consensus 271 ~a 272 (286)
T TIGR00841 271 FA 272 (286)
T ss_pred HH
Confidence 33
No 10
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.03 E-value=0.014 Score=52.49 Aligned_cols=63 Identities=17% Similarity=0.084 Sum_probs=50.1
Q ss_pred hhhhHHHHHHHhHHhhhhh-hhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhcccc
Q 041301 228 KAGTGTAMFSMGIFMALQE-KLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSII 290 (291)
Q Consensus 228 ~~~~plaL~~lG~~L~~~~-~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~~~vl 290 (291)
-....++++.+|++++.++ ++..++.+......+.|++++|++++++..+++++++.+...++
T Consensus 11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL 74 (286)
T TIGR00841 11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLI 74 (286)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 3447789999999998655 23334556778889999999999999999999999988776654
No 11
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=95.97 E-value=0.044 Score=50.24 Aligned_cols=94 Identities=11% Similarity=0.040 Sum_probs=62.0
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHH-HhhhhhhH------HHHHHHhHHhhhhh-hhhhcCchHHHH
Q 041301 187 LKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSIL-IMSKAGTG------TAMFSMGIFMALQE-KLLACGPSLTAF 258 (291)
Q Consensus 187 ~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~-~l~~~~~p------laL~~lG~~L~~~~-~~~~~~~~~~~~ 258 (291)
.+.+....+.++++|++.... .|+.....-. ...+...| ..|+.+|..+..++ ++..+++|....
T Consensus 5 ~~~~~~~~~~~~i~~~~~g~~-------~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~ 77 (328)
T TIGR00832 5 ERYLTLWIFLAIAAGVGLGVL-------FPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLIL 77 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHH
Confidence 344555667788888888765 4443322211 11233444 35677777776544 344567888999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCccchhc
Q 041301 259 GMVLKFIAGPAAMAIGSIAT-GLRGDVLRV 287 (291)
Q Consensus 259 ~~~~kli~~Pli~~~~~~~~-~l~~~~~~~ 287 (291)
+....++++|++++++++.+ +.+++.+..
T Consensus 78 ~~~~qfvi~Plla~~l~~l~~~~~p~l~~G 107 (328)
T TIGR00832 78 SLFINWIIGPFLMFLLAWLFLRDLFEYIAG 107 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999865 888875543
No 12
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=95.87 E-value=0.036 Score=50.17 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=53.8
Q ss_pred CcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh-hhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhccc
Q 041301 214 KMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE-KLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSI 289 (291)
Q Consensus 214 ~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~-~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~~~v 289 (291)
-.|+.....-... .....+.++..|+.|..+. +...++++....+.+.-++++|++++++++++.+|++.+.-.+
T Consensus 28 ~~~~~~~~~~~~~-~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ 103 (319)
T COG0385 28 IFPETFGWLGSAI-PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLL 103 (319)
T ss_pred hccccchhhhHHH-HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHH
Confidence 3454443332222 5556667777777776443 3344678999999999999999999999999999998776544
No 13
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=93.55 E-value=0.48 Score=40.72 Aligned_cols=97 Identities=11% Similarity=0.001 Sum_probs=72.5
Q ss_pred HHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHH
Q 041301 186 WLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFI 265 (291)
Q Consensus 186 ~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli 265 (291)
.|+.+.||.+++.++.+.+-.. .+++.. -...--+.+.+.--| +-.++..=|..+.+..+++|+.+...+++=-+
T Consensus 28 ~~~~~l~PlLv~~~~li~~L~~---~~i~Y~-~Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~ 102 (230)
T COG1346 28 TKSPFLNPLLVATVLLIAFLLL---FGISYE-DYMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVGSV 102 (230)
T ss_pred cCCcccchHHHHHHHHHHHHHH---cCCCHH-HHhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999888877665 355443 334444555555556 77788888887666677889999988888888
Q ss_pred HHHHHHHHHHHHhCCCccchhc
Q 041301 266 AGPAAMAIGSIATGLRGDVLRV 287 (291)
Q Consensus 266 ~~Pli~~~~~~~~~l~~~~~~~ 287 (291)
+.=...+.+++++|+|++..+.
T Consensus 103 ~ai~s~~llak~~g~~~~~~~S 124 (230)
T COG1346 103 VAIISGVLLAKLFGLSPELILS 124 (230)
T ss_pred HHHHHHHHHHHHhCCCHHHHHH
Confidence 8888889999999999876554
No 14
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=92.91 E-value=7.6 Score=35.82 Aligned_cols=246 Identities=13% Similarity=0.085 Sum_probs=125.9
Q ss_pred ccccChhhhHHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhHHHHHHHHHHHHHHHHHHHHHhhcCCccchhh
Q 041301 31 WKIIAPEECAAINRLV-----CYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWC 102 (291)
Q Consensus 31 ~~~~~~~~~~~l~~lv-----~~v~lP~lif~~l~~~~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 102 (291)
.++++++..+..+++. .|+...|++--|+...|.+-+ -.+++...+.+.....+++.+...+.+.+ ..+..
T Consensus 6 ~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~-~~~~~ 84 (347)
T TIGR00783 6 YNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLG-FDHSL 84 (347)
T ss_pred eCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HhHhh
Confidence 5889999998888854 478889999999988775422 44566666666666666665555555544 33322
Q ss_pred hhh-h-hhccccccccchHHHHHH-hhcccchhHHHHHHHHHHHHHHHHHHHHHHh----hh--c---cCc----cc-c-
Q 041301 103 ITN-F-SLCTLTNTLVLGVPLMKA-MYGQMAVDLVVQSSVFQSIVWFTIFLFILEF----RR--A---GNA----LE-D- 164 (291)
Q Consensus 103 ~~~-~-~~~~~~N~~~~g~Pi~~~-l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~---~~~----~~-~- 164 (291)
..- . ..+.-.+.|..++..+.+ ..|++.-.+.... +....+-+.+++..... .+ . ++. ++ |
T Consensus 85 ~~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~s~~-ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~~~~~~~ 163 (347)
T TIGR00783 85 MYIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIFSQL-IPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELVRSEKRE 163 (347)
T ss_pred heeeehhcCCCcccchhhHHHHHHHHhCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEeecCCcc
Confidence 111 1 113434466666665544 5565543332221 11112223333322211 11 1 110 00 1
Q ss_pred c-ccCCCCCCCCChhHHH------------HHHHHHHHh--hchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhh-
Q 041301 165 L-EEGHATSSSRPSFWHL------------MKVVWLKLA--KNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSK- 228 (291)
Q Consensus 165 ~-~~~~~~s~~~~~~~~~------------~~~~~~~~~--~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~- 228 (291)
. ++++++.+.+.+.++. ..... +.+ .+++.+.++++.+++.+ ++ +|+-+.+-.+..++
T Consensus 164 ~~~~~~~~~~~~~~~~~~g~Gl~~a~~~y~~g~l~-~~~~~Ih~~v~mII~~vi~k~~----gl-lp~~i~~~a~~~~~F 237 (347)
T TIGR00783 164 DAEKAKEITEIKIDVKLMGSGVLFAVALFMAGGLL-KSFPGIPAYAFMILIAAALKAF----GL-VPKEIEEGAKMLSQF 237 (347)
T ss_pred hhhhccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHh----CC-CCHHHHHHHHHHHHH
Confidence 1 0111110112221110 11111 222 37899999999999998 76 88887777777773
Q ss_pred ---hhhHHHHHHHhHHhhhhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHHhCCCccch
Q 041301 229 ---AGTGTAMFSMGIFMALQEKLLACGP-SLTAFGMVLKFIAGPAAMAIGSIATGLRGDVL 285 (291)
Q Consensus 229 ---~~~plaL~~lG~~L~~~~~~~~~~~-~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~ 285 (291)
..++..+..+|.....-++ ..... ......++.=.+.+=+..+.+.+++|+-|..+
T Consensus 238 ~~~~lt~~ll~giGla~t~l~~-L~~a~t~~~vviiv~~Vlg~ii~s~lvGKllG~YPiE~ 297 (347)
T TIGR00783 238 ISKNLTWPLMVGVGVSYIDLDD-LVAALSWQFVVICLSVVVAMILGGAFLGKLMGMYPVES 297 (347)
T ss_pred HHHHHHHHHHHHcccccCCHHH-HHHHhchhHhhhHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 3444445555655322221 12222 33344444444444555566778888766544
No 15
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=92.78 E-value=7.4 Score=35.33 Aligned_cols=213 Identities=11% Similarity=0.091 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHhHhhh-hhccccChhhhHHHHHHHHHHHhHHHHH--HHhccCCCCCcchhHHHHHHHHHHHHHHHH
Q 041301 10 VIVAMVPLYFALILGYGSV-KWWKIIAPEECAAINRLVCYFTLPLFTI--EFTTHVDPFNMNYRFIGADAISKLIIVIVL 86 (291)
Q Consensus 10 vl~~vl~i~~li~iG~~~~-r~~~~~~~~~~~~l~~lv~~v~lP~lif--~~l~~~~~~~~~~~~l~~~~~~~~i~~~~~ 86 (291)
++..++-+...+.+++.++ |+.| +|++..--+. -=.-++=..-+. ....+++-++.....-.....+...+++ .
T Consensus 86 ~~~~~~~v~~~~~~~~~lg~r~~~-l~~~~~~Lia-~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~-~ 162 (305)
T PF03601_consen 86 LLIIIIVVILTFLLTYWLGRRLFG-LDRKLAILIA-AGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFL-Y 162 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH-hhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHH-H
Confidence 4455666777788888888 6555 3544322222 222222222222 2244555343322222222222222221 1
Q ss_pred HHHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccc
Q 041301 87 AFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLE 166 (291)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (291)
-.+......+ +... ..+.+.+--|++-. --....||++....+...-...+.+.-++...+.-+.+.++++
T Consensus 163 P~l~~~l~l~-~~~~--G~w~G~sIh~~aqV--vaAg~~~g~~a~~~A~ivKl~Rv~lL~pv~~~l~~~~~~~~~~---- 233 (305)
T PF03601_consen 163 PLLGHALGLS-PQQF--GAWAGGSIHDTAQV--VAAGAIYGEEAGDVATIVKLTRVLLLGPVVLVLALFWARRQEK---- 233 (305)
T ss_pred HHHHHHhCCC-HHHH--HHHhhhhhcccchH--hhhhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----
Confidence 2233433333 2221 11333444555432 2234457888878888888888877766666554332221110
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh
Q 041301 167 EGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE 246 (291)
Q Consensus 167 ~~~~~s~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~ 246 (291)
++.+ .+ | ..-|.++--.++...-.+ -...|+.+.+.++.+++-..-++|.++|.+.+.++
T Consensus 234 -------~~~~----~~---~--~~~P~FvlgFl~~~~l~s----~~~~~~~~~~~~~~~s~~~~~~A~aaiGl~~~~~~ 293 (305)
T PF03601_consen 234 -------SSGK----SK---K--VSFPWFVLGFLAASLLNS----LGLLPAAVVSALKSLSKWLFALAMAAIGLSTNFKD 293 (305)
T ss_pred -------cccc----cC---c--cCcCHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH
Confidence 0111 00 1 225655444444433333 34688999999999999999999999999997655
Q ss_pred hhhhcCchH
Q 041301 247 KLLACGPSL 255 (291)
Q Consensus 247 ~~~~~~~~~ 255 (291)
..+.++|.
T Consensus 294 -l~~~G~kp 301 (305)
T PF03601_consen 294 -LKQVGWKP 301 (305)
T ss_pred -HHhcCccc
Confidence 22344554
No 16
>PRK10711 hypothetical protein; Provisional
Probab=92.20 E-value=0.77 Score=39.80 Aligned_cols=96 Identities=7% Similarity=-0.068 Sum_probs=71.8
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHH
Q 041301 187 LKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIA 266 (291)
Q Consensus 187 ~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~ 266 (291)
++.+.||.+++.++-+.+-.. .+++..++ .+.-+.+....-| +-.+++.-+..+.+..+++++++...+.+=-++
T Consensus 27 ~~~~l~Pll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v 101 (231)
T PRK10711 27 KFPLLNPLLVAMVVIIPFLLL---TGIPYEHY-FKGSEVLNDLLQP-AVVALAFPLYEQLHQIRARWKSIISICFIGSVV 101 (231)
T ss_pred CCCcccHHHHHHHHHHHHHHH---hCCCHHHH-HhccHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 566779999888766665444 26555444 4455666665555 556778888877667788899999999999999
Q ss_pred HHHHHHHHHHHhCCCccchhc
Q 041301 267 GPAAMAIGSIATGLRGDVLRV 287 (291)
Q Consensus 267 ~Pli~~~~~~~~~l~~~~~~~ 287 (291)
.-...+.+++++|+|++....
T Consensus 102 ~i~s~~~l~~~lg~~~~~~~S 122 (231)
T PRK10711 102 AMVTGTAVALWMGATPEIAAS 122 (231)
T ss_pred HHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999876554
No 17
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=91.82 E-value=1.2 Score=38.21 Aligned_cols=97 Identities=14% Similarity=0.071 Sum_probs=70.3
Q ss_pred HHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHH
Q 041301 186 WLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFI 265 (291)
Q Consensus 186 ~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli 265 (291)
+++.+.||.+++.++=+.+-.. .+.+..++. +.-+.+....-| +-.+++.-+..+.+..+++++.+...+..=-+
T Consensus 15 ~~~~~l~P~l~a~~~ii~~L~~---~~i~y~~Y~-~gg~~l~~lLgP-atVALAvPLY~~~~~l~~~~~~il~~~~~g~~ 89 (215)
T PF04172_consen 15 FKSPFLNPLLIAIVLIIAFLLL---TGIPYEDYM-QGGDILSFLLGP-ATVALAVPLYRQRRLLKKNWIPILVGVLVGSL 89 (215)
T ss_pred cCCCcccHHHHHHHHHHHHHHH---HCCCHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455679999988775444333 266554443 455666554444 47888999987666777888999988888888
Q ss_pred HHHHHHHHHHHHhCCCccchhc
Q 041301 266 AGPAAMAIGSIATGLRGDVLRV 287 (291)
Q Consensus 266 ~~Pli~~~~~~~~~l~~~~~~~ 287 (291)
+.-.....+++++|+|++....
T Consensus 90 ~~~~~~~~l~~~lgl~~~~~~S 111 (215)
T PF04172_consen 90 VSIFSAVLLARLLGLSPEIILS 111 (215)
T ss_pred HHHHHHHHHHHHHCcCHHHHHH
Confidence 8888899999999999876543
No 18
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=91.81 E-value=0.31 Score=40.80 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=40.6
Q ss_pred hHHHHHHHhHHhhhhh-hhhhcCchHHHHHHHHHHHHHHHHHHHHH-HHhCCCccchhcc
Q 041301 231 TGTAMFSMGIFMALQE-KLLACGPSLTAFGMVLKFIAGPAAMAIGS-IATGLRGDVLRVS 288 (291)
Q Consensus 231 ~plaL~~lG~~L~~~~-~~~~~~~~~~~~~~~~kli~~Pli~~~~~-~~~~l~~~~~~~~ 288 (291)
.-..++.+|.+++.++ ++..++.|....+.+.+++++|++++++. ..++.+++.+...
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl 63 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGL 63 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHH
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4467788888887554 33335567778899999999999999998 8888888755443
No 19
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=91.27 E-value=1.5 Score=38.05 Aligned_cols=96 Identities=15% Similarity=-0.013 Sum_probs=70.0
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHH
Q 041301 187 LKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIA 266 (291)
Q Consensus 187 ~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~ 266 (291)
++.+.||.+++.++-+.+-.. .+++..+. .+.-+.+....-| +-.+++.-+..+.+..+++++.+...+++=-++
T Consensus 32 ~~~~lnPll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~ 106 (232)
T PRK04288 32 GFFLFTPLFVAMVLGIAFLKL---TGISYEEY-NIGGDIISFFLEP-ATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC 106 (232)
T ss_pred CCcchhHHHHHHHHHHHHHHH---hCCCHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455679999888776665544 25555443 4455555555444 556778888876677788899999999999999
Q ss_pred HHHHHHHHHHHhCCCccchhc
Q 041301 267 GPAAMAIGSIATGLRGDVLRV 287 (291)
Q Consensus 267 ~Pli~~~~~~~~~l~~~~~~~ 287 (291)
.-...+.+++++|+|++....
T Consensus 107 ~i~s~~~la~~lgl~~~~~~S 127 (232)
T PRK04288 107 SVLIIYLVAKLIQLDNAVMAS 127 (232)
T ss_pred HHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999876543
No 20
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=90.61 E-value=16 Score=34.64 Aligned_cols=263 Identities=11% Similarity=0.062 Sum_probs=135.9
Q ss_pred HHHHHHHHhHhhhhhccccChhhhHHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhHHHHHHHHHHHHHHHHH
Q 041301 16 PLYFALILGYGSVKWWKIIAPEECAAINRLV-----CYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKLIIVIVLA 87 (291)
Q Consensus 16 ~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv-----~~v~lP~lif~~l~~~~~~~~---~~~~l~~~~~~~~i~~~~~~ 87 (291)
++++++.--++. . .++++++..+..+++. .|+..-+++--|+...|.+-+ -.+++...+.+....++++.
T Consensus 62 ~il~~f~ps~Lv-~-~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~ 139 (414)
T PF03390_consen 62 AILCIFVPSALV-Y-FGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGG 139 (414)
T ss_pred HHHHHHHHHHHH-H-cCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666665 4 6999999999988886 578888999999888775422 45666666666666666666
Q ss_pred HHHHhhcCCccchhhhhh-h-hhccccccccchHHHH-HHhhcccchhHH---HHHHHHHHHHHHHHHHHHHHhhhcc--
Q 041301 88 FWGMCSKKGSCFSWCITN-F-SLCTLTNTLVLGVPLM-KAMYGQMAVDLV---VQSSVFQSIVWFTIFLFILEFRRAG-- 159 (291)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~-~-~~~~~~N~~~~g~Pi~-~~l~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-- 159 (291)
+...+.+.+ ..+....- . ..+.-.+.|.+++... ....|.+.-.+. +......+++.-..+-.+-...+..
T Consensus 140 lvG~l~G~~-~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ 218 (414)
T PF03390_consen 140 LVGMLFGYS-FKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPK 218 (414)
T ss_pred HHHHHhCCC-HHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 666665554 33332211 1 1133334555544443 223354432222 2222222222221111111111111
Q ss_pred --Cc------ccccccCCCCCCCCChhH------------HHHHHHHHHHhh-chhHHHHHHHHHHHHhhhccCCCcChh
Q 041301 160 --NA------LEDLEEGHATSSSRPSFW------------HLMKVVWLKLAK-NPNSYACVIGLAWAFVANRWHFKMPSI 218 (291)
Q Consensus 160 --~~------~~~~~~~~~~s~~~~~~~------------~~~~~~~~~~~~-nP~~ia~i~gli~~~~~~~~~~~~P~~ 218 (291)
+| ++|.++++++++++.+.. ......+.+.+. +++.+-+++..+++.+ +. +|+.
T Consensus 219 ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~----~l-vP~~ 293 (414)
T PF03390_consen 219 LTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAF----GL-VPES 293 (414)
T ss_pred CCCCceEEeCCccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh----Cc-CCHH
Confidence 11 111111111111222211 111223333332 4466777777777777 65 7776
Q ss_pred HHHHH----HHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchh
Q 041301 219 IEGSI----LIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLR 286 (291)
Q Consensus 219 i~~~l----~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~ 286 (291)
+.+.. +......++..|..+|...-.-++....-.......++.-.+..-+..+.+.+++|+-+..+.
T Consensus 294 ~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsA 365 (414)
T PF03390_consen 294 LEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESA 365 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 66555 455667889999999998432222222112233344444445555556667888888765543
No 21
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=90.54 E-value=1.7 Score=37.58 Aligned_cols=95 Identities=8% Similarity=-0.035 Sum_probs=68.8
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHH
Q 041301 187 LKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIA 266 (291)
Q Consensus 187 ~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~ 266 (291)
++.+.||.+++.++-+.+-.. .+++..+. .+--+.+....-| +..+++.-+..+.+..+++++++...+..=-++
T Consensus 26 ~~~~lnPvl~~~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~ 100 (226)
T TIGR00659 26 KRPYLNPLLLTPLVLVGILLL---VGIPYESY-MLGGGVINDLLGP-AVVALAIPLYKQLPQIKKYWKEIILNVAVGSVI 100 (226)
T ss_pred CCccccHHHHHHHHHHHHHHH---hCCCHHHH-HHhhHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999988876665444 25555444 4555555544433 567788888776667778888888888888888
Q ss_pred HHHHHHHHHHHhCCCccchh
Q 041301 267 GPAAMAIGSIATGLRGDVLR 286 (291)
Q Consensus 267 ~Pli~~~~~~~~~l~~~~~~ 286 (291)
.-.....+++++|++++...
T Consensus 101 ~~~s~~~la~~lg~~~~i~~ 120 (226)
T TIGR00659 101 AIISGTLLALLLGLGPEIIA 120 (226)
T ss_pred HHHHHHHHHHHHCcCHHHHH
Confidence 88888899999999987654
No 22
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=89.26 E-value=17 Score=33.14 Aligned_cols=192 Identities=10% Similarity=0.047 Sum_probs=110.8
Q ss_pred chhHHHHHHHHHH-HHHHHHHHHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhh-cccchhHHHH-HHHHHHHH
Q 041301 68 NYRFIGADAISKL-IIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMY-GQMAVDLVVQ-SSVFQSIV 144 (291)
Q Consensus 68 ~~~~l~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~-G~~~~~~~~~-~~~~~~~~ 144 (291)
+|+.......+.. ++-++++..++..+-+ .+-+...+..++.+-+ --. .+..++. ||-+.+.... .+..-.++
T Consensus 66 ~p~~vligl~~qfvlmPlla~~~~~~~~l~--~~l~~Gl~ll~~~Pgg-v~S-~~~t~lAkGnValsV~~tsvStll~~f 141 (319)
T COG0385 66 HPRLVLIGLAAQFVLMPLLALLLAKLFPLP--PELAVGLLLLGCCPGG-VAS-NAMTYLAKGNVALSVCSTSVSTLLGPF 141 (319)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHhHHheeeCCCc-hhH-HHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 7776654444433 3334566677765533 2323222222333333 233 5566666 6655432211 11222344
Q ss_pred HHHHHHHHHHhhhccCcccccccCCCCCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHH
Q 041301 145 WFTIFLFILEFRRAGNALEDLEEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSIL 224 (291)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~ 224 (291)
.-|+-+.++.. ++ ...+.+ +.+++++. -.++-.++|.++.-. .|+++...-+
T Consensus 142 ~tPllv~l~~~--~~--------------v~~~~~----~m~~~i~~-~vllP~~LG~~~r~~-------~~~~~~~~~~ 193 (319)
T COG0385 142 LTPLLVGLLAG--GG--------------VPVDVG----GMFLSILL-QVLLPFVLGQLLRPL-------LPKWVERLKK 193 (319)
T ss_pred HHHHHHHHHhc--CC--------------CCCchH----HHHHHHHH-HHHHHHHHHHHHHHH-------HHHHHHHHhh
Confidence 45666655542 21 122323 33444432 245556778887755 6788888888
Q ss_pred HhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhccccC
Q 041301 225 IMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ 291 (291)
Q Consensus 225 ~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~~~vl~ 291 (291)
.+.....-..++++....+............+...+.+-+.+.=.+++...+.+|+|.+..++..+|
T Consensus 194 ~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie 260 (319)
T COG0385 194 ALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIE 260 (319)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEe
Confidence 8888888888888888887544222222224456677778888888888899999999998887765
No 23
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=88.69 E-value=11 Score=34.41 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=56.9
Q ss_pred HHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccC---C-CCCcchhHHHHH-HHH---HHHHHHHHH
Q 041301 16 PLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHV---D-PFNMNYRFIGAD-AIS---KLIIVIVLA 87 (291)
Q Consensus 16 ~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~---~-~~~~~~~~l~~~-~~~---~~i~~~~~~ 87 (291)
.+++=+.+|-+++|+.+-..++ .|...+.+-...+-..++.++.+. + .++.+...+... .++ ..+.+.+++
T Consensus 166 ~vllP~~~Gq~~r~~~~~~~~~-~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 244 (313)
T PF13593_consen 166 TVLLPLVLGQLLRRWVPKWVAR-HKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVLGW 244 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455677774332211112 344555667777777777776654 2 122333322221 111 122333455
Q ss_pred HHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhhccc
Q 041301 88 FWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQM 129 (291)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~ 129 (291)
..+|..+-+ ++|. +.... |+-..+.-.|.|++..+|++.
T Consensus 245 ~~~r~~~~~-~~d~-iA~~F-~gs~Ksl~~gvpl~~~lf~~~ 283 (313)
T PF13593_consen 245 LAARLLGFS-RPDR-IAVLF-CGSQKSLALGVPLASILFPGH 283 (313)
T ss_pred HHHhhcCCC-hhhE-EEEEE-EcCcCcchhHHHHHHHHcccc
Confidence 666654433 3332 22222 555778899999999999875
No 24
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=87.54 E-value=3 Score=38.44 Aligned_cols=100 Identities=10% Similarity=0.057 Sum_probs=62.5
Q ss_pred HHHHHHHhHhhhhhccccChhhhHH---HHHHHHHHHhHHHHH-HHhccCCCCCc----chhHHHHHHHHHHHHHHHHHH
Q 041301 17 LYFALILGYGSVKWWKIIAPEECAA---INRLVCYFTLPLFTI-EFTTHVDPFNM----NYRFIGADAISKLIIVIVLAF 88 (291)
Q Consensus 17 i~~li~iG~~~~r~~~~~~~~~~~~---l~~lv~~v~lP~lif-~~l~~~~~~~~----~~~~l~~~~~~~~i~~~~~~~ 88 (291)
...++.+|.++. ..++++++..+. .++++.+...+.++. ..+...|++++ +++.+..+..+.+.+.+.+++
T Consensus 207 ~v~mII~~vi~k-~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 207 YAFMILIAAALK-AFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 456677888884 489999876554 555555555555554 56777777642 455555555555545555677
Q ss_pred HHHhhcCCccchhhhhh-hhhccccccccch
Q 041301 89 WGMCSKKGSCFSWCITN-FSLCTLTNTLVLG 118 (291)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~~~~~~~N~~~~g 118 (291)
..|+.+-. +-|.++++ +|.+..+.+|.++
T Consensus 286 vGKllG~Y-PiE~aItagLC~~~~GGtGDva 315 (347)
T TIGR00783 286 LGKLMGMY-PVESAITAGLCNSGMGGTGDVA 315 (347)
T ss_pred HHHHhCCC-hHHHHHHHhhhccCCCCCCcee
Confidence 88887755 44555554 5556666676664
No 25
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=86.69 E-value=4.3 Score=36.86 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=64.1
Q ss_pred hhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHH
Q 041301 190 AKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPA 269 (291)
Q Consensus 190 ~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pl 269 (291)
-.++.++|+++|++++-. -...|+....-++.-++.....+...+|..+.... ...-+++. ......=....=.
T Consensus 25 ~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~-i~~~G~~~-~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 25 GLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSD-ILALGWKG-LLIIIIVVILTFL 98 (305)
T ss_pred CccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHH-HHHhCccH-HHHHHHHHHHHHH
Confidence 358889999999999842 35788999999999999999999999999997655 22223333 3333333444444
Q ss_pred HHHHHH-HHhCCCccch
Q 041301 270 AMAIGS-IATGLRGDVL 285 (291)
Q Consensus 270 i~~~~~-~~~~l~~~~~ 285 (291)
+.+.+. +++++|....
T Consensus 99 ~~~~lg~r~~~l~~~~~ 115 (305)
T PF03601_consen 99 LTYWLGRRLFGLDRKLA 115 (305)
T ss_pred HHHHHHHHHhCCCHHHH
Confidence 455556 8899987654
No 26
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=85.53 E-value=1.8 Score=39.37 Aligned_cols=83 Identities=19% Similarity=0.150 Sum_probs=59.8
Q ss_pred chhHHHHHHHHHHHHhhhccCCCcChhHHHHH--HHhhhhhhHHHHHHHhHHhhhhh-hhhhcCchHHHHHHHHHHHHHH
Q 041301 192 NPNSYACVIGLAWAFVANRWHFKMPSIIEGSI--LIMSKAGTGTAMFSMGIFMALQE-KLLACGPSLTAFGMVLKFIAGP 268 (291)
Q Consensus 192 nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l--~~l~~~~~plaL~~lG~~L~~~~-~~~~~~~~~~~~~~~~kli~~P 268 (291)
|+.+++++.++.+... .|-|..-.+.+ +...+..+.+..+.-|++++.++ +...+++|........-+++.|
T Consensus 1 ~~fl~~l~~ai~la~~-----~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYL-----FPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred CchHHHHHHHHHHHHH-----cCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4567778888888775 23333322233 24555668889999999998655 3344678888999999999999
Q ss_pred HHHHHHHHHhC
Q 041301 269 AAMAIGSIATG 279 (291)
Q Consensus 269 li~~~~~~~~~ 279 (291)
++++++..+++
T Consensus 76 ll~~~~~~l~~ 86 (313)
T PF13593_consen 76 LLGFGLSRLFP 86 (313)
T ss_pred HHHHHHHHHhh
Confidence 99999988774
No 27
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=78.92 E-value=49 Score=30.12 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHH
Q 041301 194 NSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAI 273 (291)
Q Consensus 194 ~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~ 273 (291)
.++++++|+++.-+ .-++|+.+.+..+. .+|+.-+.+|..++.+. ....+.+-+.....+ .++.=.+.+.
T Consensus 169 lilpILiGmilGNl----d~~~~~~l~~Gi~f----~I~f~~f~LG~~lnl~~-I~~~G~~GIlL~v~v-v~~t~~~~~~ 238 (312)
T PRK12460 169 ALLPLVLGMILGNL----DPDMRKFLTKGGPL----LIPFFAFALGAGINLSM-LLQAGLAGILLGVLV-TIVTGFFNIF 238 (312)
T ss_pred HHHHHHHHHHHhcc----chhhHHHHhccceE----eHHHHHHHhcCCeeHHH-HHHhChHHHHHHHHH-HHHHHHHHHH
Confidence 67788888888655 44567776666555 88999999999998665 223344444333332 3333334444
Q ss_pred HHHHhCCCccc
Q 041301 274 GSIATGLRGDV 284 (291)
Q Consensus 274 ~~~~~~l~~~~ 284 (291)
+.+++|.|+..
T Consensus 239 i~rllg~~~~~ 249 (312)
T PRK12460 239 ADRLVGGTGIA 249 (312)
T ss_pred HHHHhCCChhH
Confidence 45777777643
No 28
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=76.77 E-value=20 Score=36.83 Aligned_cols=89 Identities=15% Similarity=0.055 Sum_probs=55.9
Q ss_pred HHhhchhHHHHHHHHHHHHhhhccCCCcChhH-----HHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHH
Q 041301 188 KLAKNPNSYACVIGLAWAFVANRWHFKMPSII-----EGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVL 262 (291)
Q Consensus 188 ~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i-----~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~ 262 (291)
++-...+++.+++|+++.-. +.+..++. ....-.+...+.++.||..|..+.... .++.|+.++...+.
T Consensus 35 Rl~Ls~~~v~Ll~GiilGP~----~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~--Lrr~wrsV~rLl~~ 108 (810)
T TIGR00844 35 KLYIGESMVASIFGLIVGPH----CLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKY--MLKHWVSVTMLLVP 108 (810)
T ss_pred hcCCcHHHHHHHHHHHhhhh----hhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHH--HHHhHHHHHHHHHH
Confidence 44456688899999998755 33333332 223333888999999999999997443 55667766666555
Q ss_pred HHHHHHHHHHHHHHH--hCCCc
Q 041301 263 KFIAGPAAMAIGSIA--TGLRG 282 (291)
Q Consensus 263 kli~~Pli~~~~~~~--~~l~~ 282 (291)
=+.+.=+++.+++++ .|++.
T Consensus 109 ~M~lT~livAL~a~~Li~GL~~ 130 (810)
T TIGR00844 109 VMTSGWLVIALFVWILVPGLNF 130 (810)
T ss_pred HHHHHHHHHHHHHHHHHcCCCH
Confidence 555544444444442 35653
No 29
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=76.67 E-value=60 Score=29.56 Aligned_cols=135 Identities=13% Similarity=0.037 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCCCCC---cchhHHHHHHHHHHHHHHHHHHHH
Q 041301 14 MVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFN---MNYRFIGADAISKLIIVIVLAFWG 90 (291)
Q Consensus 14 vl~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~~~~---~~~~~l~~~~~~~~i~~~~~~~~~ 90 (291)
.+|-..++-+|..+-...|+++ ......+-+-|-.+|++++.-+.+-|+.+ +.-+.+..++++.+ .-.+++.+.
T Consensus 31 ~Vpa~v~iy~gamff~t~Glfs--~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv-~~vlGfIl~ 107 (384)
T COG5505 31 AVPAAVIIYAGAMFFTTVGLFS--VESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSV-GTVLGFILA 107 (384)
T ss_pred hhhHHHHHHHHHHHHhhccccc--ccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHH-HHHHHHHHH
Confidence 4566667777766544468884 66778888999999999999998888654 34455544443332 222333333
Q ss_pred Hh-hcCCccchhhhhh-hhhccccccccchHHHHHHhh--cccchhHHHHHHHHHHHHHHHHHHHHH
Q 041301 91 MC-SKKGSCFSWCITN-FSLCTLTNTLVLGVPLMKAMY--GQMAVDLVVQSSVFQSIVWFTIFLFIL 153 (291)
Q Consensus 91 ~~-~~~~~~~~~~~~~-~~~~~~~N~~~~g~Pi~~~l~--G~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (291)
.. .+..-..-|...+ +.++.-+-..+ +.-.+..+ +++...+....|.+..-+...+-..+.
T Consensus 108 yp~~ksf~gd~Wka~gmi~gSytGGSaN--mAAmqaaLeVP~~~fsatlaaDtv~ySll~~lli~iV 172 (384)
T COG5505 108 YPLLKSFIGDLWKAGGMISGSYTGGSAN--MAAMQAALEVPGEYFSATLAADTVMYSLLFFLLISIV 172 (384)
T ss_pred HHHHhhhcchHHhhhhheeeeeeCCcch--HHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1111000122222 33233333333 34556666 344445555566555444444444443
No 30
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=73.86 E-value=18 Score=36.02 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=58.7
Q ss_pred chhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHH
Q 041301 192 NPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAM 271 (291)
Q Consensus 192 nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~ 271 (291)
+|.+-|.++|++++- -+....+.+.++.+.+...|+-.+.+|+.++.+. ....+..+...++..+++-++..
T Consensus 238 s~~LGAFlaGl~l~~------s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~--l~~~~~~il~~~~~~l~~K~~~~ 309 (601)
T PRK03659 238 SMALGTFIAGVLLAE------SEYRHELEIAIEPFKGLLLGLFFISVGMALNLGV--LYTHLLWVLISVVVLVAVKGLVL 309 (601)
T ss_pred cHHHHHHHHHHHhcC------CchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH--HHHhHHHHHHHHHHHHHHHHHHH
Confidence 555666666666552 2333456666777788999999999999997543 23345555666677788888888
Q ss_pred HHHHHHhCCCcc
Q 041301 272 AIGSIATGLRGD 283 (291)
Q Consensus 272 ~~~~~~~~l~~~ 283 (291)
++.+..+|.+..
T Consensus 310 ~~~~~~~g~~~~ 321 (601)
T PRK03659 310 YLLARLYGLRSS 321 (601)
T ss_pred HHHHHHhCCCHH
Confidence 888888888753
No 31
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=68.58 E-value=27 Score=31.68 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHhhhccCC-CcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHH
Q 041301 194 NSYACVIGLAWAFVANRWHF-KMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMA 272 (291)
Q Consensus 194 ~~ia~i~gli~~~~~~~~~~-~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~ 272 (291)
.++-+++|.+++=+. .+. +.=...++.+-.=+++...+-+++.|.+++.++ .....|+-...+..|+++.-++.+
T Consensus 15 mvVPLllgalinTf~--P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~--~~~~lkkg~~ll~~K~~~~~~lgl 90 (314)
T PF03812_consen 15 MVVPLLLGALINTFF--PNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKS--AGKVLKKGGVLLLVKFIIGALLGL 90 (314)
T ss_pred eHHHHHHHHHHHhcC--CChhhccCcHHHHHHcchHHHHHHHHHHhccccchhh--hhHHHHhhhHHHHHHHHHHHHHHH
Confidence 345566666666440 011 101223343333455667778999999998655 234467778889999999999999
Q ss_pred HHHHHhCCCcc
Q 041301 273 IGSIATGLRGD 283 (291)
Q Consensus 273 ~~~~~~~l~~~ 283 (291)
++.+++|-++.
T Consensus 91 ~~~~~fg~~Gi 101 (314)
T PF03812_consen 91 LVGKFFGPEGI 101 (314)
T ss_pred HHHHHcCcccc
Confidence 99999998875
No 32
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=64.97 E-value=34 Score=34.35 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=47.9
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Q 041301 217 SIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDV 284 (291)
Q Consensus 217 ~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~ 284 (291)
..+.+-++.+.+...|+-.+.+|++++... ....+..+...++..++.-++..++.+..+|.+...
T Consensus 260 ~~le~~i~pf~~lll~lFFi~vG~~id~~~--l~~~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~ 325 (621)
T PRK03562 260 HALESDIEPFKGLLLGLFFIAVGMSIDFGT--LLENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQ 325 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH
Confidence 456667777788889999999999997543 222344455556677888888888888888886543
No 33
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=61.83 E-value=31 Score=33.33 Aligned_cols=40 Identities=10% Similarity=0.025 Sum_probs=27.5
Q ss_pred HHHHHhhchhHHHHHHHHHHHHhhh-ccCCCcChhHHHHHH
Q 041301 185 VWLKLAKNPNSYACVIGLAWAFVAN-RWHFKMPSIIEGSIL 224 (291)
Q Consensus 185 ~~~~~~~nP~~ia~i~gli~~~~~~-~~~~~~P~~i~~~l~ 224 (291)
.+++++++|++||+.++-.....+. ..-.-.|..+.+.++
T Consensus 250 P~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~ 290 (466)
T KOG2532|consen 250 PYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLG 290 (466)
T ss_pred CHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC
Confidence 4789999999999999877655421 112357777766554
No 34
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=61.27 E-value=45 Score=30.72 Aligned_cols=90 Identities=9% Similarity=-0.011 Sum_probs=56.8
Q ss_pred hchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHH
Q 041301 191 KNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAA 270 (291)
Q Consensus 191 ~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli 270 (291)
.++.++|+++|++++-. ...+.|+....-++.-++-..-.+...+|.++...+ ...-+.+ .......=....=.+
T Consensus 31 l~~~~~AillG~~l~n~---~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~-i~~~G~~-~l~~~~~~v~~~~~~ 105 (335)
T TIGR00698 31 LSALFLAILLGMVAGNT---IYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPY-IADVGPN-EIVADTLILTSTFFL 105 (335)
T ss_pred CcHHHHHHHHHHHHhcc---ccccchhhccchHHHHHHHHHHHHHHHHCccccHHH-HHHhhHH-HHHHHHHHHHHHHHH
Confidence 57889999999998753 122467777778888888889999999999997655 2222222 222222222222233
Q ss_pred HHHHH-HHhCCCccch
Q 041301 271 MAIGS-IATGLRGDVL 285 (291)
Q Consensus 271 ~~~~~-~~~~l~~~~~ 285 (291)
+..+. +.+++|....
T Consensus 106 ~~~~g~k~l~l~~~~~ 121 (335)
T TIGR00698 106 TVFLGSSRLKLDKQMS 121 (335)
T ss_pred HHHHHHHHhCCChhHH
Confidence 33344 6888887654
No 35
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=59.49 E-value=97 Score=27.13 Aligned_cols=89 Identities=15% Similarity=0.080 Sum_probs=54.2
Q ss_pred HHHHHhhchhHHHH-HHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHH
Q 041301 185 VWLKLAKNPNSYAC-VIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLK 263 (291)
Q Consensus 185 ~~~~~~~nP~~ia~-i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~k 263 (291)
..|+ ++.|...+. +.|+++.-. ..+. .|+ .+.++.+++....+.++..|..++.+. .++..|........-
T Consensus 10 l~~~-l~lP~~v~~il~GillGp~--~lg~-i~~--~~~~~~l~~igl~~llF~~Gl~~d~~~--l~~~~~~~~~~~~~~ 81 (273)
T TIGR00932 10 LSRR-LGIPSVLGYLLAGVLIGPS--GLGL-ISN--VEGVNHLAEFGVILLMFLIGLELDLER--LWKLRKAAFGVGVLQ 81 (273)
T ss_pred HHHH-hCCCHHHHHHHHHHHhCcc--cccC-CCC--hHHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHHH
Confidence 3445 567765554 557776522 1132 121 146888999999999999999987544 455566666666665
Q ss_pred HHHHH-HH-HHHHHHHhCCCc
Q 041301 264 FIAGP-AA-MAIGSIATGLRG 282 (291)
Q Consensus 264 li~~P-li-~~~~~~~~~l~~ 282 (291)
.++ | .. +....++++.+.
T Consensus 82 ~~~-~~~~~~~~~~~~~~~~~ 101 (273)
T TIGR00932 82 VLV-PGVLLGLLLGHLLGLAL 101 (273)
T ss_pred HHH-HHHHHHHHHHHHHCCCH
Confidence 554 4 22 333456677654
No 36
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=58.61 E-value=48 Score=27.87 Aligned_cols=84 Identities=12% Similarity=0.112 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHH-
Q 041301 198 CVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSI- 276 (291)
Q Consensus 198 ~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~- 276 (291)
+++|.++.+.+...=+.+|++..+.=-.=-..+..+.++.+|..+......... ....+...++=++..|..+..++.
T Consensus 13 LliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l~~~~~~~~~-slklLLiIvFllLTaPVaSHaIARA 91 (197)
T PRK12585 13 ILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVGYFFHSGEGF-NARVLLAVLFIFLTTPVASHLINRA 91 (197)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544421113589998887644444445566777777555322111111 223455566669999999998864
Q ss_pred --HhCCCc
Q 041301 277 --ATGLRG 282 (291)
Q Consensus 277 --~~~l~~ 282 (291)
..|.+.
T Consensus 92 Ayr~Gv~~ 99 (197)
T PRK12585 92 AYDTGVPL 99 (197)
T ss_pred HHHcCCCc
Confidence 345543
No 37
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=56.44 E-value=1.7e+02 Score=27.05 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=44.9
Q ss_pred hchhHHHHHHH-HHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHH
Q 041301 191 KNPNSYACVIG-LAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMV 261 (291)
Q Consensus 191 ~nP~~ia~i~g-li~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~ 261 (291)
+-|.++--.++ .+++-. + .+|+...+.++.+++...-++|.++|...+.++ ..+.++|+.....+
T Consensus 250 ~~P~FvlgFl~~~~l~S~----~-~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~-l~~~G~kp~~~g~i 315 (335)
T TIGR00698 250 TIPWFAVLFIGVAIFNSF----D-LLPGEVVQALVPLDTFLLATAMAALGLTTNVSA-VKKAGVKPLFASYA 315 (335)
T ss_pred CCChHHHHHHHHHHHHHh----h-hCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHHcCchHHHHHHH
Confidence 34755443333 334433 3 589999999999999999999999999997665 23345666655443
No 38
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=55.97 E-value=85 Score=29.79 Aligned_cols=88 Identities=10% Similarity=-0.014 Sum_probs=52.8
Q ss_pred hhccccChh---hhHHHHHHHHHHHhHHHHHHH-hccCCCCC----cchhHHHHHHHHHHHHHHHHHHHHHhhcCCccch
Q 041301 29 KWWKIIAPE---ECAAINRLVCYFTLPLFTIEF-TTHVDPFN----MNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFS 100 (291)
Q Consensus 29 r~~~~~~~~---~~~~l~~lv~~v~lP~lif~~-l~~~~~~~----~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 100 (291)
|-.++++++ ..+..++++.+-..|.+++-- +...|+++ +++..+.......+...+.+++..|+.+-. +-|
T Consensus 285 K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~Y-PvE 363 (414)
T PF03390_consen 285 KAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFY-PVE 363 (414)
T ss_pred HHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hHH
Confidence 556777764 455677887777776666654 66567664 266665554444444444456677876644 345
Q ss_pred hhhhh-hhhccccccccc
Q 041301 101 WCITN-FSLCTLTNTLVL 117 (291)
Q Consensus 101 ~~~~~-~~~~~~~N~~~~ 117 (291)
.++++ +|.+..+-+|.+
T Consensus 364 sAItaGLC~an~GGtGDv 381 (414)
T PF03390_consen 364 SAITAGLCMANMGGTGDV 381 (414)
T ss_pred HHHHhhhcccCCCCCCcc
Confidence 55544 455666666665
No 39
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=55.22 E-value=49 Score=33.17 Aligned_cols=86 Identities=19% Similarity=0.124 Sum_probs=53.5
Q ss_pred hhchhHHHHHH-HHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHH
Q 041301 190 AKNPNSYACVI-GLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGP 268 (291)
Q Consensus 190 ~~nP~~ia~i~-gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~P 268 (291)
++.|.+++-++ |+++.= +..+. .++ .+.++.++...+.+.||.+|..++.+. .++..+.++.....-.++.-
T Consensus 27 l~lp~vlgyilaGillGP--~~lg~-i~~--~~~i~~laelGvv~LlF~iGLEl~~~~--l~~~~~~~~~~g~~qv~~~~ 99 (621)
T PRK03562 27 LGLGSVLGYLIAGCIIGP--WGLRL-VTD--VESILHFAEFGVVLMLFVIGLELDPQR--LWKLRRSIFGGGALQMVACG 99 (621)
T ss_pred hCCChHHHHHHHHHHhCc--ccccC-CCC--HHHHHHHHHHHHHHHHHHHHhCcCHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 57787777644 666542 11222 121 245788999999999999999997544 34445555554555555544
Q ss_pred HHHHHHHHHhCCCc
Q 041301 269 AAMAIGSIATGLRG 282 (291)
Q Consensus 269 li~~~~~~~~~l~~ 282 (291)
.+...+++.+|.+.
T Consensus 100 ~~~~~~~~~~g~~~ 113 (621)
T PRK03562 100 GLLGLFCMLLGLRW 113 (621)
T ss_pred HHHHHHHHHhCCCH
Confidence 55555667777654
No 40
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=52.55 E-value=1.9e+02 Score=26.50 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHhhhccCCCcChhHH-HHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHH---HHHHHHHHHHHH
Q 041301 194 NSYACVIGLAWAFVANRWHFKMPSIIE-GSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTA---FGMVLKFIAGPA 269 (291)
Q Consensus 194 ~~ia~i~gli~~~~~~~~~~~~P~~i~-~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~---~~~~~kli~~Pl 269 (291)
.++=.++|...+.... +..-++... +....++..+....+..+-...+.+.+....+..... ..++.=....-.
T Consensus 184 v~lPlvlG~~lr~~~~--~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~ 261 (328)
T TIGR00832 184 LGIPLIAGILTRYWLL--KRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFF 261 (328)
T ss_pred HHHHHHHHHHHHHHHH--HccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 3344555666654310 111124444 4444455555444444444444333323333332232 245577778888
Q ss_pred HHHHHHHHhCCCccchhccccC
Q 041301 270 AMAIGSIATGLRGDVLRVSIIQ 291 (291)
Q Consensus 270 i~~~~~~~~~l~~~~~~~~vl~ 291 (291)
+++...+.++++.++.++..+|
T Consensus 262 lg~~~~r~~~l~~~~~~a~~~e 283 (328)
T TIGR00832 262 LTFALAKKLGLPYSITAPAAFT 283 (328)
T ss_pred HHHHHHHHhCcChhhhhhheeh
Confidence 8888899999999998887765
No 41
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=48.42 E-value=1e+02 Score=30.41 Aligned_cols=83 Identities=12% Similarity=-0.008 Sum_probs=52.6
Q ss_pred chhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHH
Q 041301 192 NPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAM 271 (291)
Q Consensus 192 nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~ 271 (291)
++.+-|.++|++++-. +..+.+.+-...+.+...|+--..+|++++... ....+......++..++.-++..
T Consensus 249 s~~lGAflaGl~l~~~------~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~--l~~~~~~~~~~~~~~~v~K~~~~ 320 (558)
T PRK10669 249 SFALGAFFAGMVLNES------ELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMI--LIQQPLAVLATLAIIVFGKSLAA 320 (558)
T ss_pred cHHHHHHHHHHHHhCC------hhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777776532 223333333344567789999999999987543 22223344455666777777777
Q ss_pred HHHHHHhCCCc
Q 041301 272 AIGSIATGLRG 282 (291)
Q Consensus 272 ~~~~~~~~l~~ 282 (291)
+..+..+|.+.
T Consensus 321 ~~~~~~~g~~~ 331 (558)
T PRK10669 321 FFLVRLFGHSR 331 (558)
T ss_pred HHHHHHhCCCh
Confidence 77787787654
No 42
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=46.16 E-value=40 Score=20.54 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=18.9
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHh
Q 041301 184 VVWLKLAKNPNSYACVIGLAWAFV 207 (291)
Q Consensus 184 ~~~~~~~~nP~~ia~i~gli~~~~ 207 (291)
...-.++.-|...+.++|+++.+-
T Consensus 4 Sl~fa~iMVPVvma~ilglIyGlG 27 (41)
T PF10766_consen 4 SLAFAVIMVPVVMALILGLIYGLG 27 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778999999999999764
No 43
>COG4389 Site-specific recombinase [DNA replication, recombination, and repair]
Probab=45.70 E-value=55 Score=31.50 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=38.7
Q ss_pred ccchHHHHHHhhccc----chhHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccCCCCCCCCChhHHHHHHHHHHHh
Q 041301 115 LVLGVPLMKAMYGQM----AVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLEEGHATSSSRPSFWHLMKVVWLKLA 190 (291)
Q Consensus 115 ~~~g~Pi~~~l~G~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 190 (291)
+++|+..+...++.+ ++..+.++.++|.++-+.+...+.-..++. +..++++-.+.+++.+.
T Consensus 590 anlgyaa~sG~~~~~~F~lg~~~vlLiGvvNl~VSF~lAl~vAlRSr~t--------------~i~s~r~I~~~VW~~Ik 655 (677)
T COG4389 590 ANLGYAAVSGNVGLGTFVLGIFSVLLIGLVNLCVSFSLALFVALRSRGT--------------KIGSIRNIIKSVWNQIK 655 (677)
T ss_pred chhHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------cchhHHHHHHHHHHHHh
Confidence 344444454444433 344445566777777777777766544432 13455555667778888
Q ss_pred hchh
Q 041301 191 KNPN 194 (291)
Q Consensus 191 ~nP~ 194 (291)
.+|.
T Consensus 656 ~~PL 659 (677)
T COG4389 656 SNPL 659 (677)
T ss_pred cCCc
Confidence 8884
No 44
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=44.73 E-value=80 Score=26.54 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh
Q 041301 196 YACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE 246 (291)
Q Consensus 196 ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~ 246 (291)
.+.++|+++... .. ++ .+..+...+...-+-++.+|+++...+
T Consensus 3 ~~li~Gi~lG~~----~~--~~--~~~~~~~~~~~L~lLLF~VGi~lG~~~ 45 (191)
T PF03956_consen 3 IALILGILLGYF----LR--PP--FSLIDKISTYALYLLLFLVGIDLGSNR 45 (191)
T ss_pred eeHHHHHHHHHH----hc--cc--ccccccHHHHHHHHHHHHHHHHhcCCH
Confidence 456777777765 21 11 222377888889999999999997543
No 45
>COG2855 Predicted membrane protein [Function unknown]
Probab=44.14 E-value=83 Score=28.92 Aligned_cols=86 Identities=13% Similarity=0.116 Sum_probs=60.6
Q ss_pred chhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHH
Q 041301 192 NPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAM 271 (291)
Q Consensus 192 nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~ 271 (291)
.|+++|+++|+++.. -.+.|+-...-++.-++.....+-...|.++..+. ...--.........-+...=.++
T Consensus 38 ~al~lAIllGi~l~~-----l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~--i~~~G~~~v~~~~~~l~~t~~~~ 110 (334)
T COG2855 38 SALTLAILLGILLGI-----LPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSD--IADVGGSGVLIIAITLSSTFLFA 110 (334)
T ss_pred hHHHHHHHHHHHHhc-----cccchhhhccchhhhHHHHHHHHHHHHcceeeHHH--HHHcCccHHHHHHHHHHHHHHHH
Confidence 589999999999984 34677778888888889999999999999998655 11112223444444455555556
Q ss_pred HHHHHHhCCCccc
Q 041301 272 AIGSIATGLRGDV 284 (291)
Q Consensus 272 ~~~~~~~~l~~~~ 284 (291)
+.+...+|+|...
T Consensus 111 ~~lg~~lgld~~~ 123 (334)
T COG2855 111 YFLGKLLGLDKKL 123 (334)
T ss_pred HHHHHHhCCCHHH
Confidence 6666788887644
No 46
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=42.79 E-value=1.3e+02 Score=29.60 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=49.7
Q ss_pred hhchhHHHH-HHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHH
Q 041301 190 AKNPNSYAC-VIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGP 268 (291)
Q Consensus 190 ~~nP~~ia~-i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~P 268 (291)
++.|.+++- ++|+++.=. ..+. .++ .+..+.+++...-+-||.+|..++.+. .++..+........-.++.-
T Consensus 28 l~~P~ivg~IlaGillGp~--~lg~-~~~--~~~~~~la~lGli~llF~~Gle~d~~~--l~~~~~~~~~~~~~~~~~~~ 100 (558)
T PRK10669 28 LRISPLVGYLLAGVLAGPF--TPGF-VAD--TKLAPELAELGVILLMFGVGLHFSLKD--LMAVKSIAIPGAIAQIAVAT 100 (558)
T ss_pred cCCCHHHHHHHHHHhhCcc--cccc-ccc--hHHHHHHHHHHHHHHHHHhHhcCCHHH--HHHHhhHHHHHHHHHHHHHH
Confidence 577877665 445555321 1122 121 256788999999999999999997544 33333333444444545444
Q ss_pred HHHHHHHHHhCCC
Q 041301 269 AAMAIGSIATGLR 281 (291)
Q Consensus 269 li~~~~~~~~~l~ 281 (291)
+++.++.+.+|.+
T Consensus 101 ~~~~~~~~~~~~~ 113 (558)
T PRK10669 101 LLGMALSAVLGWS 113 (558)
T ss_pred HHHHHHHHHhCCC
Confidence 4455555666654
No 47
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=42.48 E-value=78 Score=28.82 Aligned_cols=86 Identities=10% Similarity=-0.001 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHH
Q 041301 195 SYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIG 274 (291)
Q Consensus 195 ~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~ 274 (291)
++-+++|.+++=+-+.. .++-++-...++.=+.+...+-+++.|.+++.+. .....++-......|.++.-++.+.+
T Consensus 16 ~vPl~lga~inTf~P~~-l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~--~~~~l~kg~~l~~~K~~~~~~~g~~~ 92 (312)
T PRK12460 16 VVPLLIGALINTFFPQA-LEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKA--APQALLKGGVLTITKLGVAIVIGLLV 92 (312)
T ss_pred HHHHHHHHHHHhccCcc-hhhCcccHHHHhcChHHHHHHHHHHhcCeeeccc--cchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 34455666665441110 2333333334444455566777999999997654 22345666777889999999999999
Q ss_pred HHHhCCCcc
Q 041301 275 SIATGLRGD 283 (291)
Q Consensus 275 ~~~~~l~~~ 283 (291)
..++|-|+.
T Consensus 93 ~~~~g~~g~ 101 (312)
T PRK12460 93 GKFFGAEGI 101 (312)
T ss_pred HHHcCcccc
Confidence 999997763
No 48
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=41.24 E-value=3.1e+02 Score=25.78 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhh------hhHHHHHHHhHHhhh
Q 041301 194 NSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKA------GTGTAMFSMGIFMAL 244 (291)
Q Consensus 194 ~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~------~~plaL~~lG~~L~~ 244 (291)
.+++......|.+. .-++|+.+.+.++.+.+. .+-+.++.+|..++.
T Consensus 234 ~iva~a~~f~~~lt----~~~vp~~la~~~~~~~~~~~~~ll~inl~llvvG~fmd~ 286 (379)
T COG1593 234 FIVAAAAAFAWLLT----VEQVPQQLADWLLSLSDSPLVVLLVINLLLLVVGTFMDL 286 (379)
T ss_pred HHHHHHHHHHHHHH----HhccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhccH
Confidence 34555555556555 678999999999988886 444566677777753
No 49
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=40.13 E-value=1.8e+02 Score=29.12 Aligned_cols=86 Identities=16% Similarity=0.030 Sum_probs=50.1
Q ss_pred hhchhHHHHH-HHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHH
Q 041301 190 AKNPNSYACV-IGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGP 268 (291)
Q Consensus 190 ~~nP~~ia~i-~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~P 268 (291)
++.|.+++-+ +|+++.= +..+. +|+ .+.+..+++....+.||.+|..++.+. .++..+........-.++.-
T Consensus 27 l~~p~ilg~ilaGillGP--~~lg~-i~~--~~~i~~laelGvv~LLF~iGLel~~~~--l~~~~~~~~~~g~~~v~~t~ 99 (601)
T PRK03659 27 LGIGAVLGYLLAGIAIGP--WGLGF-ISD--VDEILHFSELGVVFLMFIIGLELNPSK--LWQLRRSIFGVGAAQVLLSA 99 (601)
T ss_pred hCCChHHHHHHHHHHhcc--ccccC-CCc--HHHHHHHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 5677777764 4666542 11222 121 245678999999999999999997554 33334444444444444433
Q ss_pred HHHHHHHHHhCCCc
Q 041301 269 AAMAIGSIATGLRG 282 (291)
Q Consensus 269 li~~~~~~~~~l~~ 282 (291)
++...+++++|++.
T Consensus 100 ~~~~~~~~~~g~~~ 113 (601)
T PRK03659 100 AVLAGLLMLTDFSW 113 (601)
T ss_pred HHHHHHHHHHccCH
Confidence 34444555666654
No 50
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=39.75 E-value=1.4e+02 Score=29.67 Aligned_cols=78 Identities=10% Similarity=0.032 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh-hhhhc-CchHHHHHHHHHHHHHHHHHHH
Q 041301 196 YACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE-KLLAC-GPSLTAFGMVLKFIAGPAAMAI 273 (291)
Q Consensus 196 ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~-~~~~~-~~~~~~~~~~~kli~~Pli~~~ 273 (291)
-..++|+++... +.++|+.+.+ ...-+-++++|.+-..+. +..++ .++. ....++=.++.-+++++
T Consensus 40 gvLfvgl~~G~~----g~~i~~~v~~-------~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~-~~~a~~~~~~~~~~~~~ 107 (562)
T TIGR03802 40 GSLIVAVLIGQL----GIQIDPGVKA-------VFFALFIFAIGYEVGPQFFASLKKDGLRE-IILALVFAVSGLITVYA 107 (562)
T ss_pred HHHHHHHHHHhc----CCCCChHHHH-------HHHHHHHHHhhhccCHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHH
Confidence 456677777766 8888876443 344455566777654332 33333 3443 34445555666677778
Q ss_pred HHHHhCCCccch
Q 041301 274 GSIATGLRGDVL 285 (291)
Q Consensus 274 ~~~~~~l~~~~~ 285 (291)
+.+++|+|....
T Consensus 108 ~~~~~g~~~~~~ 119 (562)
T TIGR03802 108 LAKIFGLDKGTA 119 (562)
T ss_pred HHHHhCCCHHHH
Confidence 888999986543
No 51
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=36.79 E-value=1.8e+02 Score=23.41 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHH
Q 041301 196 YACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGS 275 (291)
Q Consensus 196 ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~ 275 (291)
+-+++|.++.+.+...=+++|++..+.=-.=-..+..+.++.+|..+...... .......+...++=++..|.....++
T Consensus 14 ill~lG~~f~ligaIGllRfPD~ytRlHAatKa~TlG~~liLlg~~l~~~~~~-~~~~~k~lLii~fl~lTaPVaah~ia 92 (145)
T PRK12586 14 IMILLGSIIALISAIGIVKFQDVFLRSHAATKSSTLSVLLTLIGVLIYFIVNT-GFFSVRLLLSLVFINLTSPVGMHLIA 92 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHccccccchhhHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555521123689998887654444556777888888877532211 01133566777888999999998886
Q ss_pred H
Q 041301 276 I 276 (291)
Q Consensus 276 ~ 276 (291)
.
T Consensus 93 R 93 (145)
T PRK12586 93 R 93 (145)
T ss_pred H
Confidence 4
No 52
>COG3329 Predicted permease [General function prediction only]
Probab=36.48 E-value=3.1e+02 Score=25.08 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=52.9
Q ss_pred HHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHH--hhhhhhhhhcCchHHHHHHHHH
Q 041301 186 WLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIF--MALQEKLLACGPSLTAFGMVLK 263 (291)
Q Consensus 186 ~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~--L~~~~~~~~~~~~~~~~~~~~k 263 (291)
..+ +.+|.+.=.+.|++.... ..+..+|+.+.+.+.. .-|+++|.- .+.+++......-........-
T Consensus 12 ~~n-L~sP~llFf~~Gmlia~~--ksdl~iP~~i~~~lsl-------yLL~aIG~kGGveir~snl~a~v~~~~~~~aL~ 81 (372)
T COG3329 12 VGN-LLSPTLLFFILGMLIAAF--KSDLEIPEAIYQALSL-------YLLLAIGFKGGVEIRNSNLTAMVLPVALGVALG 81 (372)
T ss_pred Hhh-hccchHHHHHHHHHHHHH--hccccCchHHHHHHHH-------HHHHHHhcccceeeecCCcchhHHHHHHHHHHH
Confidence 344 459999999999998887 2346789888877654 467777752 1112222222233344444455
Q ss_pred HHHHHHHHHHHHHHhCCCccch
Q 041301 264 FIAGPAAMAIGSIATGLRGDVL 285 (291)
Q Consensus 264 li~~Pli~~~~~~~~~l~~~~~ 285 (291)
+++.++.-+.+....++|...+
T Consensus 82 ~li~~ia~f~l~kl~~vdtvda 103 (372)
T COG3329 82 FLIVFIAYFLLRKLPKVDTVDA 103 (372)
T ss_pred HHHHHHHHHHHHHccccchHHH
Confidence 5555554455566667765443
No 53
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=36.46 E-value=3.5e+02 Score=25.03 Aligned_cols=87 Identities=10% Similarity=-0.058 Sum_probs=41.8
Q ss_pred HHHHHHHHhHHHHHHHhccC-CCCCc--chhHHHHHHHHHHHHHHHHHHHHHhhcCCccchhhhhhh-hhccccccccch
Q 041301 43 NRLVCYFTLPLFTIEFTTHV-DPFNM--NYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNF-SLCTLTNTLVLG 118 (291)
Q Consensus 43 ~~lv~~v~lP~lif~~l~~~-~~~~~--~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~N~~~~g 118 (291)
+.-+-+=..||++|-.+.-. |+.-+ +.+.+..-..+.+-.|. .+..+....-+ ..+.+..++ .++=-+-+.|..
T Consensus 63 ~~gi~~~l~P~LIF~GIGAmtDFgpllanP~~~llGaaAQ~Gif~-t~~~A~~lGf~-~~eAAsIgIIGgADGPtsIf~s 140 (360)
T PF03977_consen 63 YFGISNGLFPPLIFMGIGAMTDFGPLLANPKTLLLGAAAQFGIFA-TFLGAILLGFT-PKEAASIGIIGGADGPTSIFVS 140 (360)
T ss_pred HHhhhcchhhHHHHHHHhHHHhhHHHHhCHHHHHHHHHHHHhHHH-HHHHHHHhCCC-HHHhhHhhhcccCCCcHHHHHH
Confidence 33344567899999999865 76643 55543332334443332 33344433322 223332232 212223334444
Q ss_pred HHHHHHhhcccch
Q 041301 119 VPLMKAMYGQMAV 131 (291)
Q Consensus 119 ~Pi~~~l~G~~~~ 131 (291)
.-+...++|.-++
T Consensus 141 ~~LAp~LlgpIaV 153 (360)
T PF03977_consen 141 SKLAPHLLGPIAV 153 (360)
T ss_pred HhhhHHHHHHHHH
Confidence 5555555665443
No 54
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=35.51 E-value=2.1e+02 Score=22.15 Aligned_cols=76 Identities=8% Similarity=0.050 Sum_probs=45.1
Q ss_pred HHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhc-cCCCC-Cc--chhHHHHHHHHHHHHHHHHHHHH
Q 041301 15 VPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT-HVDPF-NM--NYRFIGADAISKLIIVIVLAFWG 90 (291)
Q Consensus 15 l~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~-~~~~~-~~--~~~~l~~~~~~~~i~~~~~~~~~ 90 (291)
+.++++++..-.+.| ++++++++.+++. ||-.+=.=+-..++ +++.- .+ .+.-+.+-..+..++|.....++
T Consensus 38 iAMlLLi~~~~~l~k-~G~l~~~te~Gi~---FW~aMYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~i~~l~ 113 (125)
T TIGR00807 38 IAMILLIISKELLAK-RGHLPQVTQFGVG---FWSAMYIPIVVAMAAGQNVVAALSGGMLALLASVAALIVTVLVIRWIS 113 (125)
T ss_pred HHHHHHHHHHHHHHH-cCCCChhHHhHHH---HHHccHhHHHHHHhhhchhHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888866 6999999888877 55554333333443 23322 22 22223333445556666666677
Q ss_pred Hhhc
Q 041301 91 MCSK 94 (291)
Q Consensus 91 ~~~~ 94 (291)
|+.+
T Consensus 114 r~g~ 117 (125)
T TIGR00807 114 KSSY 117 (125)
T ss_pred HhCC
Confidence 7644
No 55
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=35.10 E-value=3.6e+02 Score=25.48 Aligned_cols=97 Identities=16% Similarity=0.065 Sum_probs=53.7
Q ss_pred HHHHHhHhhhhhccccChhh---hHHHHHHHH-HHHhHHHHHHHhccCCCCC----cchhHHHHHHHHHHHHHHHHHHHH
Q 041301 19 FALILGYGSVKWWKIIAPEE---CAAINRLVC-YFTLPLFTIEFTTHVDPFN----MNYRFIGADAISKLIIVIVLAFWG 90 (291)
Q Consensus 19 ~li~iG~~~~r~~~~~~~~~---~~~l~~lv~-~v~lP~lif~~l~~~~~~~----~~~~~l~~~~~~~~i~~~~~~~~~ 90 (291)
.++.+=.++ |..++++++. .+.++++.. +.+-|.+.=..+.-.|+++ +.|..+.......+.+...+++..
T Consensus 295 ~MIil~a~l-k~~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~g 373 (438)
T COG3493 295 FMIILVAIL-KAANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVG 373 (438)
T ss_pred HHHHHHHHH-HHhCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 3457776543 455666655 4555555555566667764 377776655444444555567777
Q ss_pred HhhcCCccchhhhhh-hhhccccccccc
Q 041301 91 MCSKKGSCFSWCITN-FSLCTLTNTLVL 117 (291)
Q Consensus 91 ~~~~~~~~~~~~~~~-~~~~~~~N~~~~ 117 (291)
|+.+-. +-|.++++ .|.+..+-+|..
T Consensus 374 rl~~~Y-PVEaAI~aglC~a~~GGtGDv 400 (438)
T COG3493 374 RLMGFY-PVEAAITAGLCMANMGGTGDV 400 (438)
T ss_pred HHhcCC-chHHHHHHhHHhcCCCCCCch
Confidence 876544 34545544 443455555544
No 56
>PRK12671 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=34.23 E-value=2.2e+02 Score=22.06 Aligned_cols=79 Identities=11% Similarity=0.042 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHH
Q 041301 198 CVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIA 277 (291)
Q Consensus 198 ~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~ 277 (291)
+++|.++.+.+...=+++|++..+.=--=-..+..+.++.+|..+...... .....+.....++=++..|..+..+...
T Consensus 19 ll~G~~f~l~gaiGllR~PD~ytRlHAatKa~TlG~~liL~g~~l~~~~~~-~~~~~k~lli~~Fl~lTaPvaaH~iaRA 97 (120)
T PRK12671 19 LVLGAGLTLIGTIGLVRLKSFYERLHAPTLGTSWGAGGILIASILYFSVLQ-SRPVLHEVLIGVFVVVTTPVTLMLLSRA 97 (120)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHhhcchhhhhhhHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544421123689999888655555566778888888877543211 0112245677788889999999988754
No 57
>PF03334 PhaG_MnhG_YufB: Na+/H+ antiporter subunit; InterPro: IPR005133 This is a family of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti (Sinorhizobium meliloti), show some similarity to chain L of the NADH dehydrogenase I, which also translocates protons. ; GO: 0005451 monovalent cation:hydrogen antiporter activity, 0015672 monovalent inorganic cation transport, 0015992 proton transport
Probab=33.17 E-value=1.8e+02 Score=20.67 Aligned_cols=61 Identities=8% Similarity=0.115 Sum_probs=43.7
Q ss_pred CCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHH
Q 041301 213 FKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSI 276 (291)
Q Consensus 213 ~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~ 276 (291)
+++|++..+.=-.=-..+....++.+|..+..... ...-+.....+.=++..|.....+++
T Consensus 17 lR~pd~y~RlHa~s~~~tlG~~lilig~~l~~~~~---~~~~k~lli~~~~~lt~Pv~sh~iar 77 (81)
T PF03334_consen 17 LRFPDFYTRLHAASKADTLGAILILIGLALYFGSS---WVSLKLLLIILFLLLTNPVASHAIAR 77 (81)
T ss_pred HhCCcHHHHhhhhhHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999887765555556677888888998875321 22345567778888999998888765
No 58
>PRK05326 potassium/proton antiporter; Reviewed
Probab=32.52 E-value=2.1e+02 Score=28.23 Aligned_cols=87 Identities=9% Similarity=-0.019 Sum_probs=50.1
Q ss_pred hhchhHHH-HHHHHHHHHhhhccC-CCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHH
Q 041301 190 AKNPNSYA-CVIGLAWAFVANRWH-FKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAG 267 (291)
Q Consensus 190 ~~nP~~ia-~i~gli~~~~~~~~~-~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~ 267 (291)
++.|.+++ +++|+++.-. ..+ ++.+ -.+..+.+++.+.++.||..|..++.+. .++..+........-.++.
T Consensus 28 ~~~P~ll~~il~GillGp~--~lg~i~~~--~~~~~~~i~~l~L~~iLF~~Gl~~~~~~--l~~~~~~~~~la~~gv~~t 101 (562)
T PRK05326 28 LGIPSLLLFLAIGMLAGED--GLGGIQFD--NYPLAYLVGNLALAVILFDGGLRTRWSS--FRPALGPALSLATLGVLIT 101 (562)
T ss_pred cCCcHHHHHHHHHHHhCcc--ccCCcccC--cHHHHHHHHHHHHHHHHHcCccCCCHHH--HHHHHHHHHHHHHHHHHHH
Confidence 46676554 4567766532 111 1222 2356788999999999999999987544 4455666655444444432
Q ss_pred HHH-HHHHHHHhCCCc
Q 041301 268 PAA-MAIGSIATGLRG 282 (291)
Q Consensus 268 Pli-~~~~~~~~~l~~ 282 (291)
=.+ ++...+++|++.
T Consensus 102 ~~~~g~~~~~l~g~~~ 117 (562)
T PRK05326 102 AGLTGLFAHWLLGLDW 117 (562)
T ss_pred HHHHHHHHHHHhcCCH
Confidence 222 233345666643
No 59
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=32.21 E-value=6.1e+02 Score=26.55 Aligned_cols=84 Identities=12% Similarity=-0.003 Sum_probs=48.5
Q ss_pred hhchhHHHHH-HHHHHHHhhhccCC-------CcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHH
Q 041301 190 AKNPNSYACV-IGLAWAFVANRWHF-------KMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMV 261 (291)
Q Consensus 190 ~~nP~~ia~i-~gli~~~~~~~~~~-------~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~ 261 (291)
++.|.+++-+ +|+++.=. ..+. -.|.--.+.++.+++...-+-||.+|+.++.+. .++..|..+...+
T Consensus 65 l~~P~ivgeIlaGIlLGPs--~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~--lr~~~k~a~~ia~ 140 (832)
T PLN03159 65 FRQPRVISEILGGVILGPS--VLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISV--IRRTGKKALAIAI 140 (832)
T ss_pred cCCChhHHHHHHHHhcCHh--hhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHH--HHhcchHHHHHHH
Confidence 5677666653 44554311 1121 133333457899999999999999999997544 4455555554444
Q ss_pred HHHHHHHHH-HHHHHHHh
Q 041301 262 LKFIAGPAA-MAIGSIAT 278 (291)
Q Consensus 262 ~kli~~Pli-~~~~~~~~ 278 (291)
.-+++ |.+ ++++++.+
T Consensus 141 ~~~il-pf~lg~~~~~~l 157 (832)
T PLN03159 141 AGMAL-PFCIGLAFSFIF 157 (832)
T ss_pred HHHHH-HHHHHHHHHHHH
Confidence 44433 443 33444433
No 60
>COG5546 Small integral membrane protein [Function unknown]
Probab=30.74 E-value=60 Score=22.79 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=25.8
Q ss_pred hhchhHHHHHHHHHHHHhhh---ccCCCcChhHHHHHHH
Q 041301 190 AKNPNSYACVIGLAWAFVAN---RWHFKMPSIIEGSILI 225 (291)
Q Consensus 190 ~~nP~~ia~i~gli~~~~~~---~~~~~~P~~i~~~l~~ 225 (291)
+|||.+|-.++|.++-+.-+ -+|+++|.-+.+.++.
T Consensus 8 mknkvf~vail~~ifllAQqll~~fGI~~~~nl~d~~n~ 46 (80)
T COG5546 8 MKNKVFLVAILGAIFLLAQQLLGWFGIKLPSNLADIANT 46 (80)
T ss_pred ecCceehHHHHHHHHHHHHHHHHHeeeecchhHHHHHHH
Confidence 58999999999988776532 2568899775555543
No 61
>PRK12675 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=30.36 E-value=2.4e+02 Score=21.25 Aligned_cols=77 Identities=10% Similarity=0.021 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHH
Q 041301 198 CVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSI 276 (291)
Q Consensus 198 ~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~ 276 (291)
+++|..+.+.+...=+++|++..+.=--=-..+..+.++.+|..+...... ....+.....++=++..|..+..+.+
T Consensus 7 ll~G~~f~l~g~iGllR~PD~ytRlHAatk~~TlG~~lil~g~~l~~~~~~--~~~~k~lli~~f~~lt~Pvaah~iar 83 (104)
T PRK12675 7 LLFGYSIMFFGALGLLRFPDVYTRLHAATKCDTGGAMGIILALALASDASL--LIKLKFLVLAFLIAMINPMVSHAIAR 83 (104)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHhhhchhhhhhhHHHHHHHHHHHhcchh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555522223689999888766656667788888889887633111 11234556666777888999988864
No 62
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=30.29 E-value=2.3e+02 Score=24.76 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=57.9
Q ss_pred HHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh-hhhhcCchHHHHHHH---HH
Q 041301 188 KLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE-KLLACGPSLTAFGMV---LK 263 (291)
Q Consensus 188 ~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~-~~~~~~~~~~~~~~~---~k 263 (291)
++..-|.+||+++|++++... -.+.++++.+--...+.....++++.+++-+...- ... .......+..+ +-
T Consensus 18 ~i~llPmlyA~iig~~~~~~~---~~~~~k~~~~~~~~~a~~~~~~~ll~l~ak~g~~vGp~i-~~i~~aGpALilQE~G 93 (241)
T PF11299_consen 18 KIVLLPMLYALIIGMALGPQK---LKPLKKIISEKEMKFAGKLVGIALLPLIAKLGTTVGPNI-PKILSAGPALILQEFG 93 (241)
T ss_pred eeehHHHHHHHHHHHHhcchh---hcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccH-HHHHHhhHHHHHHHhc
Confidence 445689999999999998651 12445778887788888888888888888775322 000 11112222222 33
Q ss_pred HHHHHHHHHHHHHHhCCCcc
Q 041301 264 FIAGPAAMAIGSIATGLRGD 283 (291)
Q Consensus 264 li~~Pli~~~~~~~~~l~~~ 283 (291)
.+...++++-++.++|++-+
T Consensus 94 nlGTillaLPiAllLGlkRE 113 (241)
T PF11299_consen 94 NLGTILLALPIALLLGLKRE 113 (241)
T ss_pred chhhHHHHhHHHHHhcccHH
Confidence 44666777777777777544
No 63
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=30.25 E-value=5.2e+02 Score=25.08 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHh
Q 041301 181 LMKVVWLKLAKNPNSYACVIGLAWAFV 207 (291)
Q Consensus 181 ~~~~~~~~~~~nP~~ia~i~gli~~~~ 207 (291)
..++.+..+++|.++.-.++..++...
T Consensus 224 ~~~~~~~~~~~Nrp~~~~l~~~l~~~~ 250 (467)
T COG2211 224 KLKDSFLLIFKNRPLLLLLLMNLLLFI 250 (467)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 477778888999998877775555544
No 64
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=29.81 E-value=5.9e+02 Score=26.66 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=29.6
Q ss_pred HHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCCCC
Q 041301 18 YFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPF 65 (291)
Q Consensus 18 ~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~~~ 65 (291)
+-...+|..+.. .-+.++..+.+..++..+++|......=.+.|+.
T Consensus 297 lGAFlaGl~lp~--~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~ 342 (832)
T PLN03159 297 FGAFVFGLVIPN--GPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVT 342 (832)
T ss_pred HHHHHHhhccCC--cchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHH
Confidence 333444555432 2233456778888999999999888775566654
No 65
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=29.70 E-value=4.9e+02 Score=24.63 Aligned_cols=76 Identities=9% Similarity=0.066 Sum_probs=46.2
Q ss_pred HHHHHhHhhhhhccccChhhhHHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhHHHHHHHHHHHHHHHHHHHH
Q 041301 19 FALILGYGSVKWWKIIAPEECAAINRLV-----CYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKLIIVIVLAFWG 90 (291)
Q Consensus 19 ~li~iG~~~~r~~~~~~~~~~~~l~~lv-----~~v~lP~lif~~l~~~~~~~~---~~~~l~~~~~~~~i~~~~~~~~~ 90 (291)
.++..-|+. . .++++++..+..+.+. .|+..+|++--++...+.+-+ ..+++.....+.......+.+..
T Consensus 82 ~~fvaa~~v-~-~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG 159 (438)
T COG3493 82 ALFVAAYLV-F-YNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVG 159 (438)
T ss_pred HHHHHHHHH-H-hccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 444444443 4 5888888888888775 688899999999887764321 33444444444444444444444
Q ss_pred HhhcCC
Q 041301 91 MCSKKG 96 (291)
Q Consensus 91 ~~~~~~ 96 (291)
..++.+
T Consensus 160 ~~~G~~ 165 (438)
T COG3493 160 LLFGLS 165 (438)
T ss_pred HHhCCC
Confidence 445544
No 66
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.65 E-value=54 Score=22.92 Aligned_cols=23 Identities=9% Similarity=0.106 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh
Q 041301 7 VYKVIVAMVPLYFALILGYGSVK 29 (291)
Q Consensus 7 ~~~vl~~vl~i~~li~iG~~~~r 29 (291)
+...+...+-+...|.+||+++|
T Consensus 4 ~lltFg~Fllvi~gMsiG~I~kr 26 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYIFKR 26 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhheec
Confidence 44556667778888999999965
No 67
>PRK12670 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=29.17 E-value=2.4e+02 Score=20.95 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHH
Q 041301 198 CVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIA 277 (291)
Q Consensus 198 ~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~ 277 (291)
+++|..+.+.+...=+++|++..+.=..=-..+....++.+|..+...... . .-+.....++=++..|.....+.+.
T Consensus 10 l~~G~~f~l~g~iGllR~pD~y~RlHA~tk~~TlG~~lil~g~~l~~~~~~--~-~~k~lli~~f~~lT~Pvaah~iarA 86 (99)
T PRK12670 10 LGLGIFLIVISVIGVIRFPDFYTRLHAAGITDSLGAALILIGLAMQCGFSV--F-TVKVLLLICLLWITSTTASYALARS 86 (99)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHhhccccchhhhHHHHHHHHHHHhcchH--H-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445655555421112589998887654444556677788888776432211 1 2234455555688999999888653
No 68
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=28.83 E-value=5.3e+02 Score=24.80 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=19.9
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHh
Q 041301 182 MKVVWLKLAKNPNSYACVIGLAWAFV 207 (291)
Q Consensus 182 ~~~~~~~~~~nP~~ia~i~gli~~~~ 207 (291)
.+...+.+++||.+|.+.++-++-+.
T Consensus 241 ~~i~~~YVL~Nk~iW~la~a~vfvYi 266 (448)
T COG2271 241 WQIFVKYVLKNKLIWLLALANVFVYV 266 (448)
T ss_pred HHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 34456788999999999888776554
No 69
>PRK05326 potassium/proton antiporter; Reviewed
Probab=28.73 E-value=3.2e+02 Score=26.89 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=47.8
Q ss_pred chhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchH-HHHHHHHHHHHHHHH
Q 041301 192 NPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSL-TAFGMVLKFIAGPAA 270 (291)
Q Consensus 192 nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~-~~~~~~~kli~~Pli 270 (291)
|+.+-+.+.|++++-. +.+--+.+.+..+.++....|+..+.+|+.+.... ....... .....+.-++.=|+.
T Consensus 245 Sg~la~~iaGl~l~n~----~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~--l~~~~~~~l~i~~~l~~vaR~l~ 318 (562)
T PRK05326 245 SGFLAVYLAGLVLGNR----PIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSR--LLDIALPALLLALFLILVARPLA 318 (562)
T ss_pred cHHHHHHHHHHHHhCC----cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777776533 22222457777888888888999999999986433 2211111 222222333444555
Q ss_pred HHHHHHHhCCC
Q 041301 271 MAIGSIATGLR 281 (291)
Q Consensus 271 ~~~~~~~~~l~ 281 (291)
.+..+..++.+
T Consensus 319 v~l~~~~~~~~ 329 (562)
T PRK05326 319 VFLSLLPFRFN 329 (562)
T ss_pred HHHHHccCCCC
Confidence 55555555554
No 70
>PRK03818 putative transporter; Validated
Probab=28.02 E-value=3.3e+02 Score=26.92 Aligned_cols=85 Identities=20% Similarity=0.129 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh-hhhhc-CchHHHHHHHHHHHHHHHHHHH
Q 041301 196 YACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE-KLLAC-GPSLTAFGMVLKFIAGPAAMAI 273 (291)
Q Consensus 196 ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~-~~~~~-~~~~~~~~~~~kli~~Pli~~~ 273 (291)
-+.+.|+++....+..+.++|+...+.++.+| .-+-+.++|.+-..+. +..++ .++.... .++=.++..++++.
T Consensus 35 g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~g---l~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~-~~~~~~~~~~~~~~ 110 (552)
T PRK03818 35 GVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFG---LILFVYTIGIQVGPGFFSSLRKSGLRLNLF-AVLIVILGGLVTAI 110 (552)
T ss_pred HHHHHHHHHhccccccCcccChHHHHHHHHHH---HHHHHHHHhhcccHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHH
Confidence 45556666665211226777877666666444 3344555666543222 22222 3343333 23333334445566
Q ss_pred HHHHhCCCccc
Q 041301 274 GSIATGLRGDV 284 (291)
Q Consensus 274 ~~~~~~l~~~~ 284 (291)
+.+++++|...
T Consensus 111 ~~~~~~~~~~~ 121 (552)
T PRK03818 111 LHKLFGIPLPV 121 (552)
T ss_pred HHHHhCCCHHH
Confidence 67889988654
No 71
>COG2855 Predicted membrane protein [Function unknown]
Probab=27.84 E-value=4.9e+02 Score=24.03 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHH
Q 041301 192 NPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTA 257 (291)
Q Consensus 192 nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~ 257 (291)
-|-++--.+++..--+ -..+|+.+.+.++.++.-..-++|-++|...+.++ ..+.+.|+..
T Consensus 253 iPwFi~gFl~~a~lnS----~~~iP~~~~~~~~~lst~ll~~aMaAlGL~t~i~~-l~~~G~kpl~ 313 (334)
T COG2855 253 IPWFILGFLLVALLNS----LGLIPAEVVSALVTLSTFLLAMAMAALGLTTHIKA-LKKAGGKPLL 313 (334)
T ss_pred CCHHHHHHHHHHHHHh----cccCcHHHHHHHHHHHHHHHHHHHHHhccccCHHH-HHHcCccHHH
Confidence 5655555555554433 44589999999999999999999999999987554 2233445443
No 72
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=26.63 E-value=1.4e+02 Score=27.24 Aligned_cols=55 Identities=18% Similarity=0.037 Sum_probs=41.4
Q ss_pred hhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 041301 226 MSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRG 282 (291)
Q Consensus 226 l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~ 282 (291)
=+.+...+-+++.|.+++.+. .....++-......|.++.-++.+.+.+++|-++
T Consensus 46 G~~~il~~~l~~~Ga~I~~k~--~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~G 100 (314)
T TIGR00793 46 GTVPILAVWFFCMGASIDLSA--TGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDG 100 (314)
T ss_pred CcHHHHHHHHHHhCCeeeecc--cchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCC
Confidence 344455667899999997554 2233455566778899999999999999999877
No 73
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=26.30 E-value=2.5e+02 Score=20.35 Aligned_cols=59 Identities=10% Similarity=0.158 Sum_probs=39.7
Q ss_pred HHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh
Q 041301 186 WLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE 246 (291)
Q Consensus 186 ~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~ 246 (291)
+.+.+.---++.++.|+..+++.+..+..+|+++.... +-...+.-.+-..|+.+.+++
T Consensus 9 ~GN~lMglGmv~Mv~gigysi~~~~~~L~Lp~~~~~ga--l~~IFiGAllWL~GARigGrE 67 (89)
T PF10762_consen 9 LGNVLMGLGMVVMVGGIGYSILSQIPQLGLPQFLAHGA--LFSIFIGALLWLVGARIGGRE 67 (89)
T ss_pred HhhHHHHHhHHHHHHhHHHHHHHhcccCCCcHHHHhhH--HHHHHHHHHHHHhcccccCcc
Confidence 44555445677888999999887777889998876532 233444445556677777665
No 74
>PRK10692 hypothetical protein; Provisional
Probab=25.54 E-value=2.7e+02 Score=20.28 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=39.3
Q ss_pred HHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh
Q 041301 186 WLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE 246 (291)
Q Consensus 186 ~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~ 246 (291)
+.+.+.---++.++.|+..+++.+..+..+|+++.... +-...+.-.+-..|+.+.+++
T Consensus 9 ~GN~lMglGmv~Mv~gigysi~~~i~~L~Lp~~~~~ga--l~~IFiGAllWL~GArigGRE 67 (92)
T PRK10692 9 LGNVLMGLGLVVMVVGVGYSILNQLPQLNLPQFFAHGA--LLSIFVGALLWLAGARVGGRE 67 (92)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHhhH--HHHHHHHHHHHHhcccccCcc
Confidence 44555555677888999999887777889998876532 223334444555677776665
No 75
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=25.06 E-value=5.4e+02 Score=23.60 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhh--ccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh
Q 041301 195 SYACVIGLAWAFVAN--RWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE 246 (291)
Q Consensus 195 ~ia~i~gli~~~~~~--~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~ 246 (291)
.++.++|++++.+.. ....+.| .++.+=....-+.|-+.|++++.++
T Consensus 85 tiGLiiGLlia~l~~~pL~~~~ip-----~~~~ii~vi~t~il~y~G~~~~~k~ 133 (356)
T COG4956 85 TIGLIIGLLIAVLLSSPLFLLPIP-----FISTIIPVILTIILAYFGFQLADKK 133 (356)
T ss_pred HHHHHHHHHHHHHHhhHHhhCCcc-----HHHhHHHHHHHHHHHHHhhHHhhhh
Confidence 467777777766521 1234455 3333333445567888999998655
No 76
>COG1906 Uncharacterized conserved protein [Function unknown]
Probab=25.02 E-value=5.5e+02 Score=23.72 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=16.9
Q ss_pred ccchHHHHHHhhcc-cchhHHHHHH
Q 041301 115 LVLGVPLMKAMYGQ-MAVDLVVQSS 138 (291)
Q Consensus 115 ~~~g~Pi~~~l~G~-~~~~~~~~~~ 138 (291)
.-+.+|+++..|+. +.++++....
T Consensus 315 vsiafPlL~pff~g~~~lalay~gg 339 (388)
T COG1906 315 VSIAFPLLMPFFTGFKKLALAYAGG 339 (388)
T ss_pred HHHhhhhhHHHhccchHHHHHHHhh
Confidence 35679999999976 6666655543
No 77
>PRK09546 zntB zinc transporter; Reviewed
Probab=23.90 E-value=2.5e+02 Score=25.43 Aligned_cols=24 Identities=17% Similarity=-0.020 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHHhccCCCCC
Q 041301 43 NRLVCYFTLPLFTIEFTTHVDPFN 66 (291)
Q Consensus 43 ~~lv~~v~lP~lif~~l~~~~~~~ 66 (291)
-+++--+++|..++.+++..++++
T Consensus 267 Ltilt~IflPlT~IaGiyGMNf~~ 290 (324)
T PRK09546 267 MSLMAMVFLPTTFLTGLFGVNLGG 290 (324)
T ss_pred HHHHHHHHHHHHHHHhhhccccCC
Confidence 345556888999999999887764
No 78
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.77 E-value=3.4e+02 Score=20.90 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHH
Q 041301 197 ACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSI 276 (291)
Q Consensus 197 a~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~ 276 (291)
-+++|..+.+.+...=+++|++..+.=-.=-..+..+.++.+|..+...... .....+.....++=++..|.....+..
T Consensus 13 ll~~G~~~~ligaiGllR~PD~y~RlHAatk~~TlG~~lil~g~~l~~~~~~-~~~~~k~ll~~~f~~lT~Pvaah~iaR 91 (118)
T PRK12587 13 FVIIGALISALAAIGLLRLEDVYSRAHAAGKASTLGAMSLLFGTFLYFIATQ-GYVNMQLIVGIIFVLITGPLSSHMIMK 91 (118)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHhhhchhhhHhhHHHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554421123689999888765555667778888899887643211 011234567777888999999998865
Q ss_pred H
Q 041301 277 A 277 (291)
Q Consensus 277 ~ 277 (291)
.
T Consensus 92 A 92 (118)
T PRK12587 92 A 92 (118)
T ss_pred H
Confidence 3
No 79
>PRK12674 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=22.84 E-value=3.2e+02 Score=20.20 Aligned_cols=78 Identities=12% Similarity=0.153 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHH
Q 041301 197 ACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSI 276 (291)
Q Consensus 197 a~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~ 276 (291)
..++|.++.+.+...=+++|++..+.=-.=-..+....++.+|..+..... ...-+.....+.=++..|.....+++
T Consensus 10 ll~~G~~f~~~gaiGllR~pD~y~RlHa~tk~~tlG~~lil~g~~l~~~~~---~~~~k~ll~~~~~~lt~pv~sh~iar 86 (99)
T PRK12674 10 LLLLGAFFALVGAIGLVRLPDVYTRLHAATKATTLGLGLVLLASALYFAGG---GNSLKALLIILFLFLTAPVAAHLLAR 86 (99)
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHhhhcchhhHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555542111258999988875555556677888888888864321 22335667777888899999988865
Q ss_pred H
Q 041301 277 A 277 (291)
Q Consensus 277 ~ 277 (291)
.
T Consensus 87 a 87 (99)
T PRK12674 87 A 87 (99)
T ss_pred H
Confidence 3
No 80
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=22.56 E-value=2.2e+02 Score=25.52 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=18.1
Q ss_pred HHHHHHHhHHHHHHHhccCCCCC
Q 041301 44 RLVCYFTLPLFTIEFTTHVDPFN 66 (291)
Q Consensus 44 ~lv~~v~lP~lif~~l~~~~~~~ 66 (291)
..+--+++|..++.+++..++++
T Consensus 262 Tvvt~IflP~t~IaGiyGMNf~~ 284 (318)
T TIGR00383 262 TVVSTIFIPLTFIAGIYGMNFKF 284 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCccc
Confidence 35567889999999999887664
No 81
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=21.42 E-value=4.3e+02 Score=21.11 Aligned_cols=83 Identities=10% Similarity=0.002 Sum_probs=37.7
Q ss_pred hHHHH-HHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh-hhhhcCchHHHHHHHHHHHHHHHHH
Q 041301 194 NSYAC-VIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE-KLLACGPSLTAFGMVLKFIAGPAAM 271 (291)
Q Consensus 194 ~~ia~-i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~-~~~~~~~~~~~~~~~~kli~~Pli~ 271 (291)
.+++. +.+.+++.. ...+.++|+++.+..+.+-. ..+|..+.... +..++.+......++.=+...=..+
T Consensus 23 ~llG~mi~~~~~~~~-~~~~~~~P~~~~~~~qviiG-------~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~ 94 (156)
T TIGR03082 23 WLLGPLLAGAVLSLA-GGLEITLPPWLLALAQVVIG-------ILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLA 94 (156)
T ss_pred HHHHHHHHHHHHHhc-CCccCCCCHHHHHHHHHHHH-------HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 334444443 11245678776665443322 23444443221 2222223333333444444444555
Q ss_pred HHHHHHhCCCccc
Q 041301 272 AIGSIATGLRGDV 284 (291)
Q Consensus 272 ~~~~~~~~l~~~~ 284 (291)
+.+.++.|.|...
T Consensus 95 ~~l~~~~~~~~~t 107 (156)
T TIGR03082 95 WLLARLTGVDPLT 107 (156)
T ss_pred HHHHHHHCCCHHH
Confidence 6666777776543
No 82
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=21.28 E-value=4e+02 Score=20.69 Aligned_cols=76 Identities=4% Similarity=0.023 Sum_probs=43.4
Q ss_pred HHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhc-cCCC-CCcc--hhHHHHHHHHHHHHHHHHHHHH
Q 041301 15 VPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT-HVDP-FNMN--YRFIGADAISKLIIVIVLAFWG 90 (291)
Q Consensus 15 l~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~-~~~~-~~~~--~~~l~~~~~~~~i~~~~~~~~~ 90 (291)
+.+++++.+.-.+.| ++.+++++.+++. ||-.+=.=+-..++ +++. ..++ +.-+.+-..+..++|...-+++
T Consensus 38 iAMlLLI~~~~~l~k-~g~l~~~te~Gi~---FW~amYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~ip~ls 113 (125)
T PF03817_consen 38 IAMLLLIFARLWLQK-KGLLSKPTEQGIE---FWSAMYIPIVVAMAAQQNVVAALSGGPVALLAGIGAVAVCFLLIPLLS 113 (125)
T ss_pred HHHHHHHHHHHHHHH-cCCCChHHHhHHH---HHHccHHHHHHHHhhhhhhHHhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 456788888888866 6999999888876 55443322333333 2232 1222 2222333345556666666677
Q ss_pred Hhhc
Q 041301 91 MCSK 94 (291)
Q Consensus 91 ~~~~ 94 (291)
|+-+
T Consensus 114 r~g~ 117 (125)
T PF03817_consen 114 RIGR 117 (125)
T ss_pred hcCC
Confidence 7643
No 83
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=20.92 E-value=4.5e+02 Score=21.18 Aligned_cols=85 Identities=9% Similarity=0.009 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhhc--cCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh-hhhhcCc--hHHHHHHHHHHHHHHHHH
Q 041301 197 ACVIGLAWAFVANR--WHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE-KLLACGP--SLTAFGMVLKFIAGPAAM 271 (291)
Q Consensus 197 a~i~gli~~~~~~~--~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~-~~~~~~~--~~~~~~~~~kli~~Pli~ 271 (291)
..+.|+++...... ..+.+|....+.++.++ .-+-+.++|.+-..+. +..++.. +......++=.+..=+..
T Consensus 27 ~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~G---L~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 27 VLFVGLLLGHFGATGPLTWYIPFSANLFIREFG---LMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred HHHHHHHHHhccccCCcceecChhHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 34566666665111 11467776666666543 3344445555543221 2222322 223233333333333333
Q ss_pred HHHHHHhCCCccc
Q 041301 272 AIGSIATGLRGDV 284 (291)
Q Consensus 272 ~~~~~~~~l~~~~ 284 (291)
+...++++++...
T Consensus 104 ~~~~~~~~~~~~~ 116 (154)
T TIGR01625 104 VALIKLLRINYAL 116 (154)
T ss_pred HHHHHHhCCCHHH
Confidence 4445789988653
No 84
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=20.69 E-value=7.3e+02 Score=23.52 Aligned_cols=86 Identities=10% Similarity=-0.032 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHH
Q 041301 195 SYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIG 274 (291)
Q Consensus 195 ~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~ 274 (291)
.++++.|+++...- ...+.++...+..+.+|+.+.-+-+-.-=+++..-+ ...-.-+......+..+++-+.++.+
T Consensus 252 v~~lfvgiIvrni~--~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLwe--L~~l~lpl~viL~vQ~i~m~lfa~fv 327 (404)
T COG0786 252 VMCLFVGVILRNIL--DLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWE--LADLALPLLVILAVQTIVMALFAIFV 327 (404)
T ss_pred HHHHHHHHHHHhHH--HHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHHHHHHHH
Confidence 35566666655441 123455578889999998876654433333443222 22234455666667777776666555
Q ss_pred -HHHhCCCccc
Q 041301 275 -SIATGLRGDV 284 (291)
Q Consensus 275 -~~~~~l~~~~ 284 (291)
.+.+|=|-+.
T Consensus 328 tfr~mG~~YdA 338 (404)
T COG0786 328 TFRLMGKNYDA 338 (404)
T ss_pred HHHHhCcchhH
Confidence 3455544443
Done!