Query 041301
Match_columns 291
No_of_seqs 114 out of 1043
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 09:26:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 97.1 0.0013 4.5E-08 59.1 8.4 94 188-289 14-108 (332)
2 3zux_A Transporter, ASBTNM; tr 95.0 1.8 6.2E-05 38.4 22.3 245 3-290 8-264 (332)
3 4ev6_A Magnesium transport pro 18.8 1.9E+02 0.0064 25.1 5.9 23 44-66 283-305 (339)
4 2iub_A CORA, divalent cation t 15.1 1.7E+02 0.0058 25.6 4.7 23 44-66 307-329 (363)
5 2k1k_A Ephrin type-A receptor 9.5 3E+02 0.01 15.7 3.0 20 10-29 17-36 (38)
6 2hac_A T-cell surface glycopro 6.7 3.9E+02 0.013 14.8 2.4 25 9-35 6-30 (33)
7 3vne_A Membrane-associated pro 6.3 7.3E+02 0.025 19.6 4.7 53 177-229 59-117 (224)
8 2l8s_A Integrin alpha-1; trans 5.0 6.8E+02 0.023 15.5 4.3 28 69-96 10-39 (54)
9 2es9_A Putative cytoplasmic pr 4.5 2.7E+02 0.0091 19.6 1.0 18 212-229 6-23 (115)
10 3tgu_G UQCRQ, mitochondrial ub 3.8 8.6E+02 0.029 16.3 3.2 24 37-60 36-59 (81)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.11 E-value=0.0013 Score=59.06 Aligned_cols=94 Identities=20% Similarity=0.172 Sum_probs=69.0
Q ss_pred HHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh-hhhhcCchHHHHHHHHHHHH
Q 041301 188 KLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE-KLLACGPSLTAFGMVLKFIA 266 (291)
Q Consensus 188 ~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~-~~~~~~~~~~~~~~~~kli~ 266 (291)
+.+.++..+.++++.+++.. .|+... .++..-....++.|+..|..++.++ +...+++|......+.++++
T Consensus 14 ~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi 85 (332)
T 3zux_A 14 SFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAI 85 (332)
T ss_dssp HHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 44567788888888888776 343211 1334445678899999999998654 22235677788899999999
Q ss_pred HHHHHHHHHHHhCCCccchhccc
Q 041301 267 GPAAMAIGSIATGLRGDVLRVSI 289 (291)
Q Consensus 267 ~Pli~~~~~~~~~l~~~~~~~~v 289 (291)
+|+++++++++++++++.+...+
T Consensus 86 ~Pll~~~l~~~~~l~~~~~~Gli 108 (332)
T 3zux_A 86 MPATAWCLSKLLNLPAEIAVGVI 108 (332)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHH
Confidence 99999999999999987665543
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=94.99 E-value=1.8 Score=38.41 Aligned_cols=245 Identities=11% Similarity=0.040 Sum_probs=114.3
Q ss_pred cHHHHHHHHHHHHHHHH--HHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCCCCCc-----chhHHHHH
Q 041301 3 GWEDVYKVIVAMVPLYF--ALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM-----NYRFIGAD 75 (291)
Q Consensus 3 ~~~~~~~vl~~vl~i~~--li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~~~~~-----~~~~l~~~ 75 (291)
.++.+.+.++.-+++.+ .+++|++.-. ..+.++. ....+++.++|..-.+.+.++. +++.....
T Consensus 8 ~l~~~~~~l~~~~~l~i~~~~~lg~~~P~--------~~~~~~~-~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~ 78 (332)
T 3zux_A 8 ILSKISSFIGKTFSLWAALFAAAAFFAPD--------TFKWAGP-YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIG 78 (332)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHCGG--------GTGGGGG-GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcch--------hhhhhHH-HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHH
Confidence 34555566665555543 3445555422 1111221 2446777888888777766542 55544332
Q ss_pred HHHHH-HHHHHHHHHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhh-cccchhHHHHHHHHHH---HHHHHHHH
Q 041301 76 AISKL-IIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMY-GQMAVDLVVQSSVFQS---IVWFTIFL 150 (291)
Q Consensus 76 ~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~-G~~~~~~~~~~~~~~~---~~~~~~~~ 150 (291)
..... +.-++++.+++....+ + +.....+..++.+-+ .. -++...+. ||... ++.....++ ++..++..
T Consensus 79 l~~~~vi~Pll~~~l~~~~~l~-~-~~~~Glil~~~~P~~-~~-s~v~t~~a~Gd~~l--a~~~~~~stll~~~~~Pl~~ 152 (332)
T 3zux_A 79 VIAQFAIMPATAWCLSKLLNLP-A-EIAVGVILVGCCPGG-TA-SNVMTYLARGNVAL--SVAVTSVSTLTSPLLTPAIF 152 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC-H-HHHHHHHHHHHSCCC-TH-HHHHHHHTTCCHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-h-HHHHHHHHHhcCCch-hH-HHHHHHHhCCCHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 23332 3334556666655443 2 222222221222322 23 23466665 45443 333333333 34445555
Q ss_pred HHHHhhhccCcccccccCCCCCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhh
Q 041301 151 FILEFRRAGNALEDLEEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAG 230 (291)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~ 230 (291)
.++.. +.. +.+ ..+..++++. =.++-.++|.+.+.. .|+...+..+.+....
T Consensus 153 ~l~~g-~~~---------------~v~----~~~~~~~l~~-~vllP~~lG~l~r~~-------~~~~~~~~~~~l~~~s 204 (332)
T 3zux_A 153 LMLAG-EML---------------EIQ----AAGMLMSIVK-MVLLPIVLGLIVHKV-------LGSKTEKLTDALPLVS 204 (332)
T ss_dssp HHHHC-GGG---------------HHH----HHHHHHHHHH-HTHHHHHHHHHHHHH-------HGGGGHHHHTTHHHHH
T ss_pred HHHcC-Ccc---------------CCC----HHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHH
Confidence 54431 110 122 3344455432 255667777777654 3333333333333333
Q ss_pred hHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhcccc
Q 041301 231 TGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSII 290 (291)
Q Consensus 231 ~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~~~vl 290 (291)
....++.+...++...+........+...++.=..+.-.+++.+++.+|++....++..+
T Consensus 205 ~~~illiv~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~ 264 (332)
T 3zux_A 205 VAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTI 264 (332)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhHHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhh
Confidence 333444444444432222222222334444555556666677778888998877766543
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=18.79 E-value=1.9e+02 Score=25.05 Aligned_cols=23 Identities=9% Similarity=-0.203 Sum_probs=18.0
Q ss_pred HHHHHHHhHHHHHHHhccCCCCC
Q 041301 44 RLVCYFTLPLFTIEFTTHVDPFN 66 (291)
Q Consensus 44 ~lv~~v~lP~lif~~l~~~~~~~ 66 (291)
..+--+++|..++.+++..++.+
T Consensus 283 Tiit~IflP~T~IaGiyGMNf~~ 305 (339)
T 4ev6_A 283 TMVTTIFAVPMWITGIYGMNFSY 305 (339)
T ss_dssp HHHHHHSSHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHHHHHhhccCcCCC
Confidence 34456789999999999887763
No 4
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=15.09 E-value=1.7e+02 Score=25.63 Aligned_cols=23 Identities=13% Similarity=0.041 Sum_probs=14.8
Q ss_pred HHHHHHHhHHHHHHHhccCCCCC
Q 041301 44 RLVCYFTLPLFTIEFTTHVDPFN 66 (291)
Q Consensus 44 ~lv~~v~lP~lif~~l~~~~~~~ 66 (291)
..+--+++|..++.+++..++++
T Consensus 307 Tiit~IflP~T~IaGiyGMNf~~ 329 (363)
T 2iub_A 307 TIIATIFMPLTFIAGIYGMNFEY 329 (363)
T ss_dssp HHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHHHhhhcccCCC
Confidence 35566889999999999887764
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=9.47 E-value=3e+02 Score=15.68 Aligned_cols=20 Identities=5% Similarity=-0.112 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhHhhhh
Q 041301 10 VIVAMVPLYFALILGYGSVK 29 (291)
Q Consensus 10 vl~~vl~i~~li~iG~~~~r 29 (291)
++..++-+.++.+++|++.|
T Consensus 17 VvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 17 IFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred ehHHHHHHHHHHHHHHHHee
Confidence 44555667777788887755
No 6
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=6.71 E-value=3.9e+02 Score=14.85 Aligned_cols=25 Identities=8% Similarity=0.075 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhccccC
Q 041301 9 KVIVAMVPLYFALILGYGSVKWWKIIA 35 (291)
Q Consensus 9 ~vl~~vl~i~~li~iG~~~~r~~~~~~ 35 (291)
-++..++-++.++..+..+ | .|+.+
T Consensus 6 YiLDgiL~iYgii~T~Ly~-R-~K~~~ 30 (33)
T 2hac_A 6 YLLDGILFIYGVILTALFL-R-VKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H-HHSTT
T ss_pred eehHHHHHHHHHHHHHHHH-H-HHhhc
Confidence 3567788889999999988 5 46443
No 7
>3vne_A Membrane-associated protein VP24; interferon antagonist, STAT1, zaire, sudan VP35, karyopherin alpha, IFN response pathway, viral protei; 2.00A {Sudan ebolavirus} PDB: 3vnf_A 4d9o_A
Probab=6.31 E-value=7.3e+02 Score=19.61 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHhhch------hHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhh
Q 041301 177 SFWHLMKVVWLKLAKNP------NSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKA 229 (291)
Q Consensus 177 ~~~~~~~~~~~~~~~nP------~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~ 229 (291)
..|...|..+-.+|+|| |+||.=+=+...+--+..+-.+-+++..+++.+++-
T Consensus 59 PaW~mTrNLFpHLF~Np~Sti~~P~waLRviLaa~l~DQl~dqSLiepl~~al~lisdW 117 (224)
T 3vne_A 59 PAWAMTRNLFPHLFKNQQSEVQTPIWALRVILAAGILDQLMDHSLIEPLSGALNLIADW 117 (224)
T ss_dssp GGGHHHHHHSHHHHSCTTEEECCHHHHHHHHHHHHHHTTC------CCHHHHHHHHHHH
T ss_pred hHHHHHhhhhHHHhcCCCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34667788889999999 688865555554441112334556788888877764
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=4.97 E-value=6.8e+02 Score=15.54 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH--hhcCC
Q 041301 69 YRFIGADAISKLIIVIVLAFWGM--CSKKG 96 (291)
Q Consensus 69 ~~~l~~~~~~~~i~~~~~~~~~~--~~~~~ 96 (291)
|..+.+...+.++..++.+.+-| +++|+
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK~GFFKR~ 39 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWKIGFFKRP 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 33344444444333333333333 45544
No 9
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=4.53 E-value=2.7e+02 Score=19.59 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=9.1
Q ss_pred CCCcChhHHHHHHHhhhh
Q 041301 212 HFKMPSIIEGSILIMSKA 229 (291)
Q Consensus 212 ~~~~P~~i~~~l~~l~~~ 229 (291)
.-.+|..+..+++.++.+
T Consensus 6 dk~MpavIdKALDFI~~M 23 (115)
T 2es9_A 6 DKSMPTAIEKALDFIGGM 23 (115)
T ss_dssp -----CHHHHHHHHHHTS
T ss_pred cCccHHHHHHHHHHhccc
Confidence 456777777777777654
No 10
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=3.81 E-value=8.6e+02 Score=16.32 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHhc
Q 041301 37 EECAAINRLVCYFTLPLFTIEFTT 60 (291)
Q Consensus 37 ~~~~~l~~lv~~v~lP~lif~~l~ 60 (291)
+..+....=+++++.|+.++..++
T Consensus 36 N~~RR~~~q~l~v~pPfi~~Y~i~ 59 (81)
T 3tgu_G 36 NVWRRFSSQVFKVAPPFLGAYLLY 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHhhHHHHHHHHHH
Confidence 345555555666666666665554
Done!