Query 041301
Match_columns 291
No_of_seqs 114 out of 1043
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 09:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041301.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041301hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 16.6 1E+02 0.0075 18.0 4.7 22 44-65 10-31 (64)
2 d2e74f1 f.23.25.1 (F:1-32) Pet 11.0 1.1E+02 0.0077 15.2 3.0 19 10-28 5-23 (32)
3 d2r6gg1 f.58.1.1 (G:7-296) Mal 10.8 3.1E+02 0.023 20.5 9.1 33 175-207 190-222 (290)
4 d2onkc1 f.58.1.1 (C:1-252) Mol 10.4 3E+02 0.022 20.1 7.4 33 175-207 166-198 (252)
5 d1v54g_ f.23.2.1 (G:) Mitochon 5.0 2.1E+02 0.015 18.0 2.4 22 38-59 12-33 (84)
6 d1q90g_ f.23.26.1 (G:) PetG su 3.6 2.9E+02 0.021 13.4 1.7 11 193-203 4-14 (30)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 3.4 3.1E+02 0.023 13.1 2.0 14 194-207 8-21 (30)
8 d1y5ic1 f.21.3.1 (C:1-225) Res 3.3 7.1E+02 0.052 17.8 4.9 21 9-29 91-111 (225)
9 d1ppjg_ f.23.13.1 (G:) Ubiquin 3.1 5.3E+02 0.039 15.5 3.2 24 37-60 36-59 (75)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 3.0 6E+02 0.044 15.6 4.0 29 68-96 30-58 (100)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=16.59 E-value=1e+02 Score=18.03 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=14.9
Q ss_pred HHHHHHHhHHHHHHHhccCCCC
Q 041301 44 RLVCYFTLPLFTIEFTTHVDPF 65 (291)
Q Consensus 44 ~lv~~v~lP~lif~~l~~~~~~ 65 (291)
..+--+++|.....++...+++
T Consensus 10 T~it~iflP~t~i~gifGMN~~ 31 (64)
T d2iuba2 10 TIIATIFMPLTFIAGIYGMNFE 31 (64)
T ss_dssp HHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHHhhhccCCC
Confidence 4566789999999999877554
No 2
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.99 E-value=1.1e+02 Score=15.21 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhHhhh
Q 041301 10 VIVAMVPLYFALILGYGSV 28 (291)
Q Consensus 10 vl~~vl~i~~li~iG~~~~ 28 (291)
++++-+--|-++++||-++
T Consensus 5 il~aa~lsfglifvgwglg 23 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLG 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHH
Confidence 4456666778888888765
No 3
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=10.75 E-value=3.1e+02 Score=20.53 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=22.7
Q ss_pred CChhHHHHHHHHHHHhhchhHHHHHHHHHHHHh
Q 041301 175 RPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFV 207 (291)
Q Consensus 175 ~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~ 207 (291)
+.+.++..+++..-+.+.....+.++..+.+..
T Consensus 190 GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~~~ 222 (290)
T d2r6gg1 190 GATPWQAFRLVLLPLSVPILAVVFILSFIAAIT 222 (290)
T ss_dssp TCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhcc
Confidence 455566666666666666677777778887776
No 4
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.44 E-value=3e+02 Score=20.08 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHHhhchhHHHHHHHHHHHHh
Q 041301 175 RPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFV 207 (291)
Q Consensus 175 ~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~ 207 (291)
+.+.++..+++..-..+.+...+.+++++.+..
T Consensus 166 Gas~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~ 198 (252)
T d2onkc1 166 GSSPLRVFFTVSLPLSVRHIVAGAIMSWARGIS 198 (252)
T ss_dssp TCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccceEEEhHHhHHHHHHHHHHHHHHHHH
Confidence 445566667776666777788888888888876
No 5
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.00 E-value=2.1e+02 Score=18.01 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHhHHHHHHHh
Q 041301 38 ECAAINRLVCYFTLPLFTIEFT 59 (291)
Q Consensus 38 ~~~~l~~lv~~v~lP~lif~~l 59 (291)
..+.-.++.+.+++||++...+
T Consensus 12 ~~~lWkkis~~va~P~i~l~~~ 33 (84)
T d1v54g_ 12 GARTWRFLTFGLALPSVALCTL 33 (84)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556678888898887664
No 6
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.58 E-value=2.9e+02 Score=13.42 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=5.1
Q ss_pred hhHHHHHHHHH
Q 041301 193 PNSYACVIGLA 203 (291)
Q Consensus 193 P~~ia~i~gli 203 (291)
|.+-++++|++
T Consensus 4 ~ll~GivlGli 14 (30)
T d1q90g_ 4 PLLCGIVLGLV 14 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhHHHhhH
Confidence 44444444443
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.39 E-value=3.1e+02 Score=13.08 Aligned_cols=14 Identities=29% Similarity=0.607 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHh
Q 041301 194 NSYACVIGLAWAFV 207 (291)
Q Consensus 194 ~~ia~i~gli~~~~ 207 (291)
.+.|+++|+.+-..
T Consensus 8 ~ifac~i~lfffai 21 (30)
T d2axtt1 8 FIFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45678888876655
No 8
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=3.27 E-value=7.1e+02 Score=17.78 Aligned_cols=21 Identities=0% Similarity=-0.366 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhh
Q 041301 9 KVIVAMVPLYFALILGYGSVK 29 (291)
Q Consensus 9 ~vl~~vl~i~~li~iG~~~~r 29 (291)
..+..+..+.+++++.+++.|
T Consensus 91 ~~~g~i~g~l~liG~~~ll~R 111 (225)
T d1y5ic1 91 MFAGGASGVLCLIGGVLLLKR 111 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777755
No 9
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.10 E-value=5.3e+02 Score=15.50 Aligned_cols=24 Identities=4% Similarity=0.013 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHhc
Q 041301 37 EECAAINRLVCYFTLPLFTIEFTT 60 (291)
Q Consensus 37 ~~~~~l~~lv~~v~lP~lif~~l~ 60 (291)
+..+....=+++++-|+.+++.++
T Consensus 36 N~~RR~~~~~l~v~PPfi~~Y~iy 59 (75)
T d1ppjg_ 36 NVLRRTRACILRVAPPFVAFYLVY 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhceEEcCHHHHHHHHH
Confidence 455556666777777777777665
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.00 E-value=6e+02 Score=15.65 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 041301 68 NYRFIGADAISKLIIVIVLAFWGMCSKKG 96 (291)
Q Consensus 68 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 96 (291)
++.+....++...+.+.+.+...|+.+++
T Consensus 30 ~~v~~i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 30 GFILVIIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccC
Done!