Query 041302
Match_columns 484
No_of_seqs 334 out of 1494
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:49:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 1.7E-68 3.6E-73 574.8 17.1 365 105-471 87-534 (635)
2 TIGR02250 FCP1_euk FCP1-like p 100.0 2.1E-38 4.5E-43 292.7 14.4 155 158-313 1-156 (156)
3 TIGR02251 HIF-SF_euk Dullard-l 100.0 2.1E-32 4.6E-37 254.0 14.6 156 163-353 1-159 (162)
4 KOG1605 TFIIF-interacting CTD 100.0 7.4E-33 1.6E-37 273.3 8.5 172 158-375 84-259 (262)
5 PF03031 NIF: NLI interacting 100.0 1.5E-30 3.2E-35 239.1 14.2 149 164-352 1-153 (159)
6 TIGR02245 HAD_IIID1 HAD-superf 99.9 1.1E-26 2.4E-31 221.4 14.1 158 158-374 16-190 (195)
7 smart00577 CPDc catalytic doma 99.9 4.5E-23 9.7E-28 188.4 13.1 143 162-315 1-146 (148)
8 KOG2832 TFIIF-interacting CTD 99.9 4.2E-22 9.1E-27 201.1 10.5 159 158-377 184-345 (393)
9 COG5190 FCP1 TFIIF-interacting 99.8 1.2E-21 2.6E-26 202.6 7.3 300 141-468 4-361 (390)
10 COG5190 FCP1 TFIIF-interacting 99.8 5.6E-19 1.2E-23 182.8 7.3 169 160-374 209-380 (390)
11 PF12738 PTCB-BRCT: twin BRCT 99.5 6.4E-14 1.4E-18 109.7 5.6 63 383-449 1-63 (63)
12 KOG3226 DNA repair protein [Re 99.4 5.9E-14 1.3E-18 141.8 5.1 98 375-476 313-410 (508)
13 PF00533 BRCT: BRCA1 C Terminu 99.4 3.5E-13 7.6E-18 108.2 8.0 75 376-454 2-78 (78)
14 smart00292 BRCT breast cancer 99.3 9.7E-12 2.1E-16 98.4 8.0 77 378-457 1-80 (80)
15 cd00027 BRCT Breast Cancer Sup 99.3 1.9E-11 4.2E-16 94.5 8.1 70 382-454 1-71 (72)
16 PLN03122 Poly [ADP-ribose] pol 98.6 5.2E-08 1.1E-12 110.2 8.1 89 375-468 185-278 (815)
17 PLN03123 poly [ADP-ribose] pol 98.5 1.6E-07 3.6E-12 108.2 7.8 90 375-468 389-481 (981)
18 KOG1929 Nucleotide excision re 98.0 8.8E-06 1.9E-10 92.0 6.3 100 366-469 90-190 (811)
19 PRK14350 ligA NAD-dependent DN 98.0 1.5E-05 3.2E-10 89.4 8.0 72 378-452 592-663 (669)
20 KOG3524 Predicted guanine nucl 98.0 2.8E-06 6.1E-11 92.7 2.1 99 377-484 116-214 (850)
21 PRK06063 DNA polymerase III su 97.9 2.3E-05 4.9E-10 80.6 7.5 71 379-453 232-304 (313)
22 PRK07956 ligA NAD-dependent DN 97.9 4E-05 8.6E-10 86.1 9.9 87 366-455 566-663 (665)
23 PRK14351 ligA NAD-dependent DN 97.9 4.1E-05 8.8E-10 86.2 9.5 75 378-455 608-683 (689)
24 KOG1929 Nucleotide excision re 97.8 1.5E-05 3.2E-10 90.2 4.3 101 367-471 481-581 (811)
25 TIGR01681 HAD-SF-IIIC HAD-supe 97.8 2.2E-05 4.8E-10 70.1 4.3 80 216-296 29-120 (128)
26 PRK06195 DNA polymerase III su 97.8 5.4E-05 1.2E-09 77.6 7.6 72 378-452 219-304 (309)
27 COG0272 Lig NAD-dependent DNA 97.7 6.7E-05 1.5E-09 82.9 8.0 72 378-452 593-664 (667)
28 TIGR00575 dnlj DNA ligase, NAD 97.7 7E-05 1.5E-09 84.0 7.2 69 378-449 583-651 (652)
29 TIGR01684 viral_ppase viral ph 97.7 9.2E-05 2E-09 75.1 7.3 77 157-269 120-198 (301)
30 PHA03398 viral phosphatase sup 97.7 0.00011 2.4E-09 74.5 7.8 78 157-270 122-201 (303)
31 COG5275 BRCT domain type II [G 97.7 0.00011 2.3E-09 70.7 6.9 78 372-452 149-227 (276)
32 cd01427 HAD_like Haloacid deha 97.6 8.8E-05 1.9E-09 63.6 5.5 73 165-267 1-74 (139)
33 KOG2043 Signaling protein SWIF 97.5 0.0001 2.2E-09 84.8 4.9 86 383-475 660-746 (896)
34 KOG0966 ATP-dependent DNA liga 97.4 0.00037 8E-09 77.7 7.5 88 377-467 631-721 (881)
35 TIGR01685 MDP-1 magnesium-depe 97.4 0.00034 7.4E-09 66.1 6.2 94 213-307 42-153 (174)
36 PF05152 DUF705: Protein of un 97.3 0.001 2.2E-08 67.0 8.6 78 157-270 116-195 (297)
37 KOG3548 DNA damage checkpoint 97.2 0.00034 7.3E-09 78.9 5.1 96 372-472 917-1040(1176)
38 TIGR01662 HAD-SF-IIIA HAD-supe 97.2 0.0021 4.5E-08 56.8 9.0 102 165-298 2-119 (132)
39 TIGR01686 FkbH FkbH-like domai 97.2 0.00051 1.1E-08 70.6 5.7 108 162-295 2-114 (320)
40 PRK13225 phosphoglycolate phos 97.2 0.00023 5E-09 71.7 3.0 79 215-295 141-223 (273)
41 PHA02530 pseT polynucleotide k 97.1 0.00049 1.1E-08 69.4 4.9 122 161-307 156-292 (300)
42 KOG2481 Protein required for n 97.1 0.00034 7.3E-09 74.7 3.8 81 377-468 325-416 (570)
43 TIGR01672 AphA HAD superfamily 97.1 0.0014 3.1E-08 64.8 8.0 130 157-297 57-197 (237)
44 TIGR01656 Histidinol-ppas hist 97.1 0.0011 2.3E-08 60.3 6.5 106 164-295 1-129 (147)
45 TIGR01664 DNA-3'-Pase DNA 3'-p 97.1 0.002 4.3E-08 60.3 8.2 104 163-294 13-137 (166)
46 TIGR01261 hisB_Nterm histidino 97.1 0.0019 4.2E-08 60.1 8.0 104 164-295 2-131 (161)
47 TIGR00213 GmhB_yaeD D,D-heptos 97.0 0.003 6.6E-08 59.0 8.7 28 215-242 25-53 (176)
48 KOG4362 Transcriptional regula 96.9 0.001 2.2E-08 73.9 5.5 81 381-468 477-563 (684)
49 TIGR01533 lipo_e_P4 5'-nucleot 96.9 0.0057 1.2E-07 61.6 9.8 117 160-297 72-201 (266)
50 PHA02597 30.2 hypothetical pro 96.8 0.0012 2.6E-08 62.3 4.5 92 214-308 72-171 (197)
51 PRK08942 D,D-heptose 1,7-bisph 96.8 0.007 1.5E-07 56.7 9.2 102 163-295 3-131 (181)
52 COG5163 NOP7 Protein required 96.8 0.0011 2.4E-08 68.9 3.8 91 367-468 335-440 (591)
53 COG4996 Predicted phosphatase 96.6 0.0038 8.3E-08 56.2 5.6 129 165-310 2-145 (164)
54 PF13419 HAD_2: Haloacid dehal 96.6 0.0037 8E-08 56.2 5.7 83 213-297 74-163 (176)
55 PRK11009 aphA acid phosphatase 96.4 0.0051 1.1E-07 61.0 5.7 134 158-297 58-197 (237)
56 TIGR01668 YqeG_hyp_ppase HAD s 96.4 0.011 2.4E-07 55.2 7.6 98 158-299 20-125 (170)
57 TIGR02253 CTE7 HAD superfamily 96.3 0.0055 1.2E-07 58.6 5.2 79 214-294 92-177 (221)
58 TIGR02254 YjjG/YfnB HAD superf 95.9 0.013 2.9E-07 55.8 5.7 83 214-298 95-186 (224)
59 TIGR01449 PGP_bact 2-phosphogl 95.8 0.016 3.5E-07 54.9 5.5 93 214-308 83-182 (213)
60 PLN02770 haloacid dehalogenase 95.7 0.016 3.4E-07 57.3 5.5 91 214-306 106-203 (248)
61 PLN03243 haloacid dehalogenase 95.7 0.016 3.5E-07 58.0 5.4 82 214-297 107-195 (260)
62 PRK05446 imidazole glycerol-ph 95.7 0.044 9.5E-07 57.5 8.7 105 162-294 1-131 (354)
63 PRK08238 hypothetical protein; 95.7 0.021 4.5E-07 62.2 6.5 89 215-310 71-167 (479)
64 TIGR01428 HAD_type_II 2-haloal 95.6 0.018 3.8E-07 54.3 5.2 79 215-295 91-176 (198)
65 PRK09449 dUMP phosphatase; Pro 95.6 0.02 4.4E-07 55.0 5.5 82 215-298 94-184 (224)
66 TIGR01509 HAD-SF-IA-v3 haloaci 95.6 0.023 5E-07 52.1 5.7 78 215-295 84-168 (183)
67 TIGR01993 Pyr-5-nucltdase pyri 95.5 0.018 3.9E-07 53.7 4.6 77 215-295 83-169 (184)
68 PF12689 Acid_PPase: Acid Phos 95.4 0.031 6.8E-07 52.6 6.0 122 163-296 3-136 (169)
69 PRK13288 pyrophosphatase PpaX; 95.4 0.03 6.4E-07 53.6 5.9 91 214-306 80-177 (214)
70 TIGR01454 AHBA_synth_RP 3-amin 95.4 0.024 5.2E-07 53.8 5.1 92 214-307 73-171 (205)
71 TIGR01422 phosphonatase phosph 95.4 0.027 5.8E-07 55.4 5.6 82 215-297 98-187 (253)
72 TIGR01663 PNK-3'Pase polynucle 95.1 0.069 1.5E-06 58.8 8.3 107 160-294 165-294 (526)
73 COG2179 Predicted hydrolase of 94.9 0.09 2E-06 49.4 7.3 121 149-311 14-141 (175)
74 PRK10563 6-phosphogluconate ph 94.9 0.016 3.5E-07 55.6 2.4 91 214-307 86-182 (221)
75 PRK06769 hypothetical protein; 94.8 0.064 1.4E-06 50.2 6.3 79 215-295 27-121 (173)
76 PRK13222 phosphoglycolate phos 94.8 0.056 1.2E-06 51.6 6.0 82 214-297 91-179 (226)
77 PRK13226 phosphoglycolate phos 94.8 0.07 1.5E-06 51.9 6.7 82 214-297 93-181 (229)
78 PRK14988 GMP/IMP nucleotidase; 94.5 0.048 1.1E-06 53.1 4.8 89 215-305 92-187 (224)
79 PLN02575 haloacid dehalogenase 94.4 0.069 1.5E-06 56.6 6.0 82 215-298 215-303 (381)
80 COG1011 Predicted hydrolase (H 94.4 0.072 1.6E-06 50.9 5.5 81 214-296 97-183 (229)
81 PRK10826 2-deoxyglucose-6-phos 94.3 0.057 1.2E-06 52.0 4.7 83 215-299 91-180 (222)
82 TIGR03351 PhnX-like phosphonat 94.2 0.079 1.7E-06 50.7 5.4 80 215-295 86-174 (220)
83 PRK09456 ?-D-glucose-1-phospha 94.0 0.049 1.1E-06 51.6 3.6 94 213-307 81-181 (199)
84 PRK10725 fructose-1-P/6-phosph 94.0 0.041 8.9E-07 51.1 3.0 81 215-298 87-173 (188)
85 KOG3524 Predicted guanine nucl 94.0 0.023 5E-07 63.0 1.4 97 369-470 200-296 (850)
86 TIGR01549 HAD-SF-IA-v1 haloaci 93.9 0.13 2.8E-06 46.2 6.0 77 214-294 62-144 (154)
87 TIGR03333 salvage_mtnX 2-hydro 93.8 0.16 3.4E-06 48.9 6.6 51 214-264 68-119 (214)
88 PRK09552 mtnX 2-hydroxy-3-keto 93.6 0.2 4.2E-06 48.4 7.0 38 215-252 73-111 (219)
89 TIGR01459 HAD-SF-IIA-hyp4 HAD- 93.6 0.12 2.6E-06 50.8 5.6 94 163-294 8-105 (242)
90 PRK11587 putative phosphatase; 93.6 0.13 2.7E-06 49.6 5.6 80 214-296 81-167 (218)
91 PF08645 PNK3P: Polynucleotide 93.5 0.094 2E-06 48.7 4.4 53 164-240 1-54 (159)
92 PRK13223 phosphoglycolate phos 93.5 0.13 2.9E-06 51.6 5.8 81 215-297 100-187 (272)
93 PRK13478 phosphonoacetaldehyde 93.4 0.16 3.4E-06 50.6 6.0 83 215-298 100-190 (267)
94 TIGR02252 DREG-2 REG-2-like, H 93.4 0.14 3.1E-06 48.2 5.5 77 215-294 104-187 (203)
95 TIGR01491 HAD-SF-IB-PSPlk HAD- 93.3 0.15 3.1E-06 47.7 5.4 80 215-295 79-174 (201)
96 TIGR01548 HAD-SF-IA-hyp1 haloa 93.3 0.2 4.3E-06 47.3 6.3 77 216-294 106-188 (197)
97 COG0560 SerB Phosphoserine pho 93.1 0.096 2.1E-06 51.0 3.9 50 214-264 75-125 (212)
98 TIGR01689 EcbF-BcbF capsule bi 93.1 0.19 4.2E-06 45.1 5.5 51 215-266 23-86 (126)
99 PRK13582 thrH phosphoserine ph 93.1 0.16 3.4E-06 48.0 5.3 81 214-295 66-155 (205)
100 TIGR02009 PGMB-YQAB-SF beta-ph 92.9 0.1 2.2E-06 48.2 3.7 79 215-297 87-172 (185)
101 PLN02779 haloacid dehalogenase 92.6 0.15 3.2E-06 51.7 4.7 90 215-305 143-240 (286)
102 TIGR01670 YrbI-phosphatas 3-de 92.6 0.2 4.3E-06 46.0 5.1 77 214-297 28-105 (154)
103 TIGR01544 HAD-SF-IE haloacid d 92.5 0.29 6.3E-06 49.7 6.6 94 214-307 119-239 (277)
104 TIGR02247 HAD-1A3-hyp Epoxide 92.4 0.11 2.4E-06 49.4 3.2 82 214-297 92-182 (211)
105 PLN02940 riboflavin kinase 92.0 0.17 3.7E-06 53.5 4.4 81 215-297 92-180 (382)
106 TIGR00338 serB phosphoserine p 92.0 0.21 4.6E-06 47.7 4.7 49 215-264 84-133 (219)
107 TIGR01489 DKMTPPase-SF 2,3-dik 91.6 0.38 8.1E-06 44.3 5.8 50 215-266 71-121 (188)
108 TIGR01691 enolase-ppase 2,3-di 91.6 0.36 7.8E-06 47.3 5.8 83 214-297 93-182 (220)
109 PF13344 Hydrolase_6: Haloacid 91.4 0.41 8.9E-06 41.0 5.3 34 219-252 17-51 (101)
110 TIGR01990 bPGM beta-phosphoglu 90.9 0.28 6.1E-06 45.2 4.1 78 215-296 86-170 (185)
111 TIGR01493 HAD-SF-IA-v2 Haloaci 90.8 0.082 1.8E-06 48.6 0.4 72 215-294 89-166 (175)
112 PRK06698 bifunctional 5'-methy 89.7 0.52 1.1E-05 50.9 5.5 80 214-297 328-413 (459)
113 COG0637 Predicted phosphatase/ 89.3 0.29 6.3E-06 47.7 2.9 82 214-297 84-172 (221)
114 KOG0966 ATP-dependent DNA liga 89.3 1.3 2.8E-05 50.5 8.2 66 401-466 804-881 (881)
115 PLN02811 hydrolase 88.9 0.48 1E-05 45.6 4.2 81 215-297 77-170 (220)
116 TIGR02137 HSK-PSP phosphoserin 88.8 0.73 1.6E-05 44.5 5.3 52 215-267 67-118 (203)
117 PRK09484 3-deoxy-D-manno-octul 88.7 0.66 1.4E-05 43.8 4.8 61 230-295 63-123 (183)
118 KOG3109 Haloacid dehalogenase- 87.8 0.65 1.4E-05 45.6 4.1 81 215-298 99-192 (244)
119 PRK00192 mannosyl-3-phosphogly 87.7 0.9 2E-05 45.3 5.4 57 163-255 4-61 (273)
120 PF09419 PGP_phosphatase: Mito 87.7 2.1 4.6E-05 40.4 7.5 103 158-303 36-157 (168)
121 TIGR01488 HAD-SF-IB Haloacid D 87.6 1.1 2.4E-05 40.9 5.5 49 215-264 72-121 (177)
122 PLN02919 haloacid dehalogenase 86.9 1.1 2.4E-05 53.6 6.2 80 217-297 162-248 (1057)
123 TIGR01456 CECR5 HAD-superfamil 86.6 1.3 2.7E-05 45.7 5.8 52 164-252 1-61 (321)
124 TIGR02463 MPGP_rel mannosyl-3- 86.1 1.1 2.5E-05 42.8 4.9 34 221-254 21-55 (221)
125 PF08282 Hydrolase_3: haloacid 85.5 1.5 3.2E-05 41.7 5.4 52 166-253 1-53 (254)
126 TIGR02461 osmo_MPG_phos mannos 85.0 1.6 3.6E-05 42.5 5.4 34 221-254 20-54 (225)
127 PLN02645 phosphoglycolate phos 84.5 1.8 3.9E-05 44.4 5.7 105 153-297 19-125 (311)
128 COG0241 HisB Histidinol phosph 84.3 4.6 0.0001 38.6 7.9 124 163-316 5-152 (181)
129 COG0561 Cof Predicted hydrolas 84.2 2.3 5E-05 41.9 6.2 59 162-256 2-61 (264)
130 PLN02954 phosphoserine phospha 84.1 2 4.4E-05 41.0 5.6 50 215-264 83-134 (224)
131 COG2503 Predicted secreted aci 83.1 1.8 3.9E-05 43.2 4.7 40 140-179 56-95 (274)
132 PRK05601 DNA polymerase III su 82.3 3.3 7.3E-05 43.8 6.7 75 378-456 293-369 (377)
133 TIGR01484 HAD-SF-IIB HAD-super 82.2 2.4 5.1E-05 40.0 5.2 35 218-252 19-54 (204)
134 smart00775 LNS2 LNS2 domain. T 81.6 3.6 7.8E-05 38.0 6.0 57 165-246 1-58 (157)
135 TIGR00099 Cof-subfamily Cof su 81.4 3.3 7.1E-05 40.6 6.0 37 219-255 19-56 (256)
136 PTZ00445 p36-lilke protein; Pr 81.3 1.9 4.1E-05 42.3 4.1 78 141-244 24-104 (219)
137 TIGR01487 SPP-like sucrose-pho 80.2 4 8.8E-05 38.9 6.0 38 219-256 21-59 (215)
138 PRK03669 mannosyl-3-phosphogly 79.7 4.5 9.9E-05 40.2 6.4 17 162-178 6-22 (271)
139 PLN03017 trehalose-phosphatase 79.1 3.5 7.7E-05 43.6 5.6 64 156-250 104-167 (366)
140 PRK10444 UMP phosphatase; Prov 79.1 3.8 8.2E-05 40.8 5.6 51 165-252 3-54 (248)
141 PRK10513 sugar phosphate phosp 79.1 4.4 9.6E-05 39.9 6.1 48 390-438 190-248 (270)
142 PRK10748 flavin mononucleotide 78.8 2.1 4.6E-05 41.8 3.7 78 215-299 112-197 (238)
143 COG4502 5'(3')-deoxyribonucleo 78.5 3.7 8E-05 37.8 4.7 76 215-308 67-151 (180)
144 COG0546 Gph Predicted phosphat 78.3 5.2 0.00011 38.6 6.2 83 214-298 87-177 (220)
145 TIGR01490 HAD-SF-IB-hyp1 HAD-s 77.5 4.2 9.1E-05 38.1 5.2 49 215-264 86-135 (202)
146 PRK10530 pyridoxal phosphate ( 76.7 7.2 0.00016 38.3 6.8 17 163-179 3-19 (272)
147 PRK10187 trehalose-6-phosphate 76.4 4.2 9.2E-05 40.7 5.1 59 163-252 14-74 (266)
148 TIGR01458 HAD-SF-IIA-hyp3 HAD- 75.9 4.6 9.9E-05 40.2 5.2 54 165-251 3-57 (257)
149 COG0647 NagD Predicted sugar p 75.6 5.1 0.00011 40.6 5.4 53 162-251 7-60 (269)
150 PF06941 NT5C: 5' nucleotidase 75.4 2.1 4.5E-05 40.4 2.5 77 215-304 72-155 (191)
151 TIGR02244 HAD-IG-Ncltidse HAD 75.4 3.9 8.5E-05 42.9 4.7 57 210-267 178-242 (343)
152 PF11019 DUF2608: Protein of u 75.1 6.4 0.00014 39.4 6.0 150 162-315 19-213 (252)
153 TIGR01486 HAD-SF-IIB-MPGP mann 74.5 6 0.00013 38.9 5.6 34 221-254 21-55 (256)
154 PLN02151 trehalose-phosphatase 74.4 5.4 0.00012 42.0 5.4 63 157-250 92-154 (354)
155 COG3882 FkbH Predicted enzyme 74.3 2.5 5.3E-05 46.0 2.9 131 153-311 212-355 (574)
156 PRK01158 phosphoglycolate phos 74.0 8.1 0.00018 36.9 6.3 56 164-255 4-60 (230)
157 KOG3548 DNA damage checkpoint 73.8 4.9 0.00011 46.7 5.2 98 364-461 1044-1159(1176)
158 TIGR01452 PGP_euk phosphoglyco 73.4 6.2 0.00013 39.6 5.5 23 219-241 21-44 (279)
159 TIGR00685 T6PP trehalose-phosp 73.3 2.6 5.6E-05 41.5 2.6 62 162-255 2-63 (244)
160 PRK15126 thiamin pyrimidine py 71.2 9.6 0.00021 37.7 6.2 48 390-438 182-240 (272)
161 TIGR01482 SPP-subfamily Sucros 71.0 8 0.00017 36.8 5.4 14 166-179 1-14 (225)
162 PLN02580 trehalose-phosphatase 70.7 8.4 0.00018 41.0 5.9 64 156-250 112-175 (384)
163 TIGR01457 HAD-SF-IIA-hyp2 HAD- 70.6 8.2 0.00018 38.2 5.5 48 396-451 178-226 (249)
164 TIGR01675 plant-AP plant acid 70.4 22 0.00047 35.3 8.3 130 158-298 72-210 (229)
165 PLN02887 hydrolase family prot 70.0 8.7 0.00019 43.1 6.1 30 149-178 294-323 (580)
166 PF00702 Hydrolase: haloacid d 69.2 8.9 0.00019 35.7 5.2 78 212-294 123-205 (215)
167 PLN02423 phosphomannomutase 68.0 6.8 0.00015 38.7 4.3 18 162-179 6-23 (245)
168 TIGR01485 SPP_plant-cyano sucr 67.7 8.8 0.00019 37.6 5.0 15 163-177 1-15 (249)
169 TIGR01460 HAD-SF-IIA Haloacid 67.6 7.2 0.00016 38.2 4.3 32 219-250 17-53 (236)
170 PRK10976 putative hydrolase; P 66.3 13 0.00029 36.4 6.0 16 164-179 3-18 (266)
171 COG1877 OtsB Trehalose-6-phosp 65.2 12 0.00025 38.0 5.3 67 153-250 8-76 (266)
172 TIGR02726 phenyl_P_delta pheny 62.5 20 0.00043 33.7 6.1 61 230-295 49-109 (169)
173 TIGR01548 HAD-SF-IA-hyp1 haloa 61.1 4.4 9.5E-05 38.1 1.4 15 165-179 2-16 (197)
174 PTZ00174 phosphomannomutase; P 59.7 19 0.00041 35.4 5.7 18 162-179 4-21 (247)
175 PRK10725 fructose-1-P/6-phosph 59.6 5 0.00011 37.0 1.5 43 396-446 142-184 (188)
176 TIGR01993 Pyr-5-nucltdase pyri 57.1 5.3 0.00012 37.0 1.2 42 396-445 141-182 (184)
177 TIGR01545 YfhB_g-proteo haloac 56.1 20 0.00043 34.6 5.0 37 215-251 93-131 (210)
178 PRK11587 putative phosphatase; 55.9 6.1 0.00013 37.8 1.5 46 396-449 138-183 (218)
179 TIGR01511 ATPase-IB1_Cu copper 55.3 23 0.0005 39.5 6.1 73 214-294 403-476 (562)
180 PRK11590 hypothetical protein; 55.2 16 0.00035 35.0 4.2 39 215-253 94-134 (211)
181 PF03767 Acid_phosphat_B: HAD 55.1 12 0.00025 36.9 3.3 128 161-298 70-206 (229)
182 COG4359 Uncharacterized conser 53.9 26 0.00056 33.9 5.2 52 215-266 72-124 (220)
183 TIGR01680 Veg_Stor_Prot vegeta 53.3 88 0.0019 31.9 9.2 82 217-298 146-236 (275)
184 PRK13288 pyrophosphatase PpaX; 52.4 7.3 0.00016 37.0 1.3 48 396-451 138-185 (214)
185 TIGR02253 CTE7 HAD superfamily 52.4 7.3 0.00016 37.0 1.3 16 164-179 3-18 (221)
186 PRK11133 serB phosphoserine ph 51.6 19 0.00041 37.3 4.3 41 215-255 180-221 (322)
187 PRK14502 bifunctional mannosyl 51.1 28 0.00062 39.8 5.9 39 136-179 394-432 (694)
188 TIGR02252 DREG-2 REG-2-like, H 50.8 9.2 0.0002 35.9 1.7 15 165-179 2-16 (203)
189 PRK14501 putative bifunctional 50.5 26 0.00057 40.3 5.6 64 157-251 486-551 (726)
190 PRK13223 phosphoglycolate phos 50.3 8.2 0.00018 38.7 1.4 17 163-179 13-29 (272)
191 TIGR01549 HAD-SF-IA-v1 haloaci 50.3 7 0.00015 34.9 0.8 15 165-179 1-15 (154)
192 TIGR03351 PhnX-like phosphonat 50.0 9.2 0.0002 36.3 1.6 47 396-449 145-192 (220)
193 PLN03243 haloacid dehalogenase 49.8 11 0.00023 37.8 2.1 20 159-178 20-39 (260)
194 PRK12702 mannosyl-3-phosphogly 49.6 36 0.00078 35.2 5.8 15 164-178 2-16 (302)
195 TIGR02009 PGMB-YQAB-SF beta-ph 48.7 8.6 0.00019 35.2 1.2 16 164-179 2-17 (185)
196 PRK13226 phosphoglycolate phos 48.7 9.4 0.0002 37.0 1.5 48 396-451 151-198 (229)
197 TIGR01454 AHBA_synth_RP 3-amin 47.1 7.4 0.00016 36.7 0.5 48 396-451 131-178 (205)
198 TIGR00338 serB phosphoserine p 47.0 11 0.00023 35.9 1.5 17 162-178 13-29 (219)
199 TIGR01990 bPGM beta-phosphoglu 46.7 9 0.00019 35.1 0.9 15 165-179 1-15 (185)
200 PLN02770 haloacid dehalogenase 46.4 9.9 0.00021 37.4 1.2 46 396-449 164-209 (248)
201 TIGR01509 HAD-SF-IA-v3 haloaci 46.4 8.9 0.00019 34.8 0.9 42 396-445 140-181 (183)
202 PRK13478 phosphonoacetaldehyde 46.0 11 0.00024 37.3 1.6 49 396-451 158-206 (267)
203 PRK11590 hypothetical protein; 45.8 11 0.00024 36.1 1.4 14 162-175 5-18 (211)
204 PF13419 HAD_2: Haloacid dehal 45.4 10 0.00022 33.6 1.0 14 166-179 1-14 (176)
205 COG0546 Gph Predicted phosphat 45.4 12 0.00025 36.2 1.5 48 396-451 145-192 (220)
206 COG1105 FruK Fructose-1-phosph 44.8 41 0.00088 34.9 5.4 53 366-418 114-167 (310)
207 TIGR01489 DKMTPPase-SF 2,3-dik 44.7 12 0.00025 34.3 1.4 17 163-179 1-17 (188)
208 PF12710 HAD: haloacid dehalog 44.3 19 0.00042 32.9 2.8 47 217-263 86-138 (192)
209 COG3769 Predicted hydrolase (H 44.3 61 0.0013 32.3 6.2 31 229-259 37-67 (274)
210 TIGR01449 PGP_bact 2-phosphogl 43.9 9.1 0.0002 36.0 0.5 46 396-449 141-186 (213)
211 TIGR01422 phosphonatase phosph 43.5 14 0.00029 36.2 1.7 49 396-451 156-204 (253)
212 PLN02382 probable sucrose-phos 43.1 12 0.00025 40.3 1.2 22 156-177 2-23 (413)
213 PRK13222 phosphoglycolate phos 42.3 12 0.00026 35.4 1.1 16 164-179 7-22 (226)
214 PRK10748 flavin mononucleotide 42.3 13 0.00028 36.2 1.4 16 164-179 11-26 (238)
215 TIGR02254 YjjG/YfnB HAD superf 41.9 13 0.00029 35.0 1.3 47 396-449 152-199 (224)
216 TIGR01512 ATPase-IB2_Cd heavy 41.5 40 0.00087 37.3 5.2 77 212-295 358-436 (536)
217 TIGR01493 HAD-SF-IA-v2 Haloaci 41.4 12 0.00026 34.1 0.9 14 166-179 2-15 (175)
218 KOG0699 Serine/threonine prote 41.4 36 0.00079 36.0 4.4 15 239-253 450-464 (542)
219 PRK14988 GMP/IMP nucleotidase; 41.3 15 0.00032 35.7 1.5 40 396-443 149-188 (224)
220 TIGR01428 HAD_type_II 2-haloal 41.1 13 0.00028 34.7 1.1 15 165-179 3-17 (198)
221 TIGR01525 ATPase-IB_hvy heavy 40.9 35 0.00076 37.9 4.6 76 213-295 381-458 (556)
222 PRK10826 2-deoxyglucose-6-phos 39.7 16 0.00034 34.9 1.5 18 162-179 6-23 (222)
223 TIGR02247 HAD-1A3-hyp Epoxide 39.4 17 0.00036 34.4 1.5 47 396-450 152-198 (211)
224 TIGR01491 HAD-SF-IB-PSPlk HAD- 38.6 16 0.00035 33.8 1.3 15 164-178 5-19 (201)
225 PRK09449 dUMP phosphatase; Pro 38.4 15 0.00033 34.9 1.1 47 396-448 150-196 (224)
226 PF06888 Put_Phosphatase: Puta 37.3 57 0.0012 32.4 5.0 51 214-266 69-122 (234)
227 PLN02779 haloacid dehalogenase 37.2 19 0.00042 36.4 1.7 48 396-451 202-249 (286)
228 PF08235 LNS2: LNS2 (Lipin/Ned 37.1 52 0.0011 30.7 4.4 63 165-252 1-64 (157)
229 COG1885 Uncharacterized protei 36.4 52 0.0011 28.7 3.9 51 117-167 51-108 (115)
230 PRK10563 6-phosphogluconate ph 36.0 20 0.00042 34.2 1.5 17 163-179 4-20 (221)
231 PF13240 zinc_ribbon_2: zinc-r 35.6 18 0.0004 22.7 0.8 19 107-125 4-23 (23)
232 PF04889 Cwf_Cwc_15: Cwf15/Cwc 34.7 17 0.00037 36.3 0.9 12 61-72 153-164 (244)
233 PRK03922 hypothetical protein; 33.5 60 0.0013 28.6 3.8 50 117-166 51-107 (113)
234 PF13248 zf-ribbon_3: zinc-rib 33.3 21 0.00045 23.0 0.8 19 107-125 7-26 (26)
235 cd02514 GT13_GLCNAC-TI GT13_GL 32.6 54 0.0012 34.3 4.1 81 213-294 6-108 (334)
236 PRK09552 mtnX 2-hydroxy-3-keto 32.0 25 0.00055 33.6 1.5 17 163-179 3-19 (219)
237 PRK13582 thrH phosphoserine ph 31.9 23 0.0005 33.1 1.2 11 165-175 3-13 (205)
238 PLN02575 haloacid dehalogenase 31.8 25 0.00053 37.5 1.5 19 161-179 129-147 (381)
239 PRK06698 bifunctional 5'-methy 31.4 21 0.00046 38.5 1.0 16 164-179 242-257 (459)
240 PF05864 Chordopox_RPO7: Chord 31.4 18 0.00038 28.2 0.2 16 113-128 2-17 (63)
241 COG0637 Predicted phosphatase/ 30.6 23 0.00051 34.3 1.0 16 164-179 3-18 (221)
242 PLN02205 alpha,alpha-trehalose 30.0 53 0.0011 38.8 3.9 60 157-249 590-651 (854)
243 TIGR02137 HSK-PSP phosphoserin 29.7 25 0.00054 33.8 1.1 12 166-177 4-15 (203)
244 PLN02954 phosphoserine phospha 28.5 32 0.00069 32.7 1.6 18 162-179 11-28 (224)
245 PHA03082 DNA-dependent RNA pol 28.1 21 0.00046 27.7 0.2 16 113-128 2-17 (63)
246 KOG2134 Polynucleotide kinase 26.7 97 0.0021 33.2 4.8 60 159-241 71-130 (422)
247 PF05822 UMPH-1: Pyrimidine 5' 26.4 99 0.0022 31.0 4.6 40 213-252 87-127 (246)
248 PLN03063 alpha,alpha-trehalose 26.3 1.2E+02 0.0026 35.5 5.9 66 157-250 501-568 (797)
249 PF10235 Cript: Microtubule-as 26.1 26 0.00057 29.8 0.4 16 113-128 67-82 (90)
250 TIGR02471 sucr_syn_bact_C sucr 26.1 30 0.00064 33.5 0.9 25 219-243 42-67 (236)
251 PF05116 S6PP: Sucrose-6F-phos 25.7 35 0.00076 33.7 1.3 13 163-175 2-14 (247)
252 COG1011 Predicted hydrolase (H 25.5 37 0.00081 32.0 1.4 18 162-179 3-20 (229)
253 PLN03064 alpha,alpha-trehalose 25.1 1.4E+02 0.003 35.7 6.2 75 156-252 584-660 (934)
254 PF05221 AdoHcyase: S-adenosyl 24.9 1.1E+02 0.0024 31.1 4.6 36 375-414 36-71 (268)
255 PRK02935 hypothetical protein; 24.7 37 0.00081 29.6 1.1 31 98-128 66-99 (110)
256 COG4850 Uncharacterized conser 23.8 2.1E+02 0.0045 30.2 6.4 82 157-256 155-238 (373)
257 PLN02940 riboflavin kinase 23.7 41 0.00089 35.6 1.5 17 163-179 11-27 (382)
258 KOG2093 Translesion DNA polyme 22.2 1E+02 0.0022 36.3 4.1 90 376-472 44-135 (1016)
259 PRK09456 ?-D-glucose-1-phospha 22.0 45 0.00098 31.3 1.2 46 396-449 141-186 (199)
260 PF06941 NT5C: 5' nucleotidase 21.3 48 0.001 31.1 1.3 17 162-178 1-17 (191)
261 PF11023 DUF2614: Protein of u 21.2 43 0.00094 29.6 0.8 31 98-128 65-98 (114)
262 TIGR01545 YfhB_g-proteo haloac 21.2 50 0.0011 31.8 1.4 18 162-179 4-21 (210)
263 PRK11133 serB phosphoserine ph 20.6 55 0.0012 33.9 1.6 19 160-178 107-125 (322)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=1.7e-68 Score=574.81 Aligned_cols=365 Identities=38% Similarity=0.626 Sum_probs=320.0
Q ss_pred ccCCCCceeecccccccccccccccCceeeeecCCcccCHHHHHHHHh-hhhhhhhhcCccEEEEcCCCceeeeccCCCC
Q 041302 105 MDNCPHPGSLGGMCYRCGKRLEEESGVTFSYICKGLRLGNDEIDRLRN-TDMKHLLRHRKLYLILDLDHTLLNSTLLLHL 183 (484)
Q Consensus 105 ~~~C~H~~~~~~~C~~Cg~~~~~~~~~~~~~~~~~l~vs~~ea~~~~~-~~~~~ll~~rKL~LVLDLDeTLIhs~~~~~~ 183 (484)
.+.|.|+++++|||+.||+.|+...+..+.|+..++.++...+..+.. ......+++++|+||+|||+||+|++..+.+
T Consensus 87 ~~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l 166 (635)
T KOG0323|consen 87 TSCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDL 166 (635)
T ss_pred cCCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchh
Confidence 588999999999999999999988788889999999999999888877 4555667777789999999999999998888
Q ss_pred Chhhhhhhccccccccccccceeeee----ceeEEEEecccHHHHHHHhhhCCeEEEecCCcHhHHHHHHhhhCCCCccc
Q 041302 184 TPEEDYLKSQADSLQDVSKGSLFMLA----FMNMMTKLRPFVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSREYF 259 (484)
Q Consensus 184 ~~~e~~~~~~~~~~~d~~~~~~f~l~----~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F 259 (484)
...+.++..+...+ ..+..+|.++ .++||||+|||+.+||++++++|||||||||+|.||..|+++|||+|+||
T Consensus 167 ~e~~~~l~~~~~~~--~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF 244 (635)
T KOG0323|consen 167 SETEKYLKEEAESV--ESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYF 244 (635)
T ss_pred hhhhhhcccccccc--cccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhCCCCccc
Confidence 87778887766531 0112233333 47899999999999999999999999999999999999999999999999
Q ss_pred ceeEEeecCCCCCccccccccC-CCCCcEEEEcCChhhhhcCCCCeEEecccccccccccccC-----------------
Q 041302 260 NARVISRDDGTQRHQKGLDVVL-GQESAVLILDDTENAWTKHRDNLILMERYHFFASSCRQFG----------------- 321 (484)
Q Consensus 260 ~~RI~sRd~c~~~~~KdL~~l~-~~~~~vVIIDD~~~vw~~~~~NlI~I~py~fF~~~~~~~g----------------- 321 (484)
++|||||++....-.+||..++ ++.+||||||||.+||..++.|+|+|.||.||.+.++.+-
T Consensus 245 ~dRIisrde~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~~~~~~~ 324 (635)
T KOG0323|consen 245 GDRIISRDESPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVACSVRGA 324 (635)
T ss_pred cceEEEecCCCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchhcccccc
Confidence 9999999998776777887776 6899999999999999987779999999999999774331
Q ss_pred --------------------------------------------------------CcccccccccccchhhHHHHHHHH
Q 041302 322 --------------------------------------------------------YHCQSLSQLRSDESELEGALASVL 345 (484)
Q Consensus 322 --------------------------------------------------------~~~~sl~e~~~de~~~D~~L~~l~ 345 (484)
...+++.+.+.|+.+.|++|.+++
T Consensus 325 ~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~~L~~~~ 404 (635)
T KOG0323|consen 325 FFKEFDPSLKSRISEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDGELANLL 404 (635)
T ss_pred cccccCcccccccccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccchhHHHHh
Confidence 122344445566778899999999
Q ss_pred HHHHHHHHHHHhhhh---hhccCchhHHHHhhhhcccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCcc
Q 041302 346 KVLKRIHNIFFDELA---NDLAGRDVRQVLKMVRGEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVT 422 (484)
Q Consensus 346 ~~L~~IH~~ff~~~~---~~~~~~DVr~IL~~lr~~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vT 422 (484)
++|+.||..||..++ +....+|||.+|+++|..+|+||.++|||++|.+.+.+++.+..++..+||..+++++..+|
T Consensus 405 kvl~~vH~~ff~~~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~t 484 (635)
T KOG0323|consen 405 KVLKPVHKGFFAKYDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTT 484 (635)
T ss_pred hhhcccchhhhhccccccccccCCChhhhhhhhhhHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhh
Confidence 999999999999874 35678999999999999999999999999999999888899999999999999999999999
Q ss_pred EEEEcCCCChHHHHHHhcC-CeeeChhhHHHHHHhcCCCCCCCCCCCCCC
Q 041302 423 HVVSTDARTEKSRWAAKEA-KFLVDPRWIETANFLWQRQPEENFPVQQTK 471 (484)
Q Consensus 423 HlVa~~~~T~K~~~A~~~g-i~IV~~~WL~~c~~~w~r~dE~~Y~l~~~~ 471 (484)
|+|+.+.||.|+.+|...+ ++||++.||+.|+.+|.+++|..|.+....
T Consensus 485 h~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~l~~~~ 534 (635)
T KOG0323|consen 485 HLIAANAGTKKVYKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEPLDDDQ 534 (635)
T ss_pred hHHhhccCcceeeccccccceeEechhHHHHHHHHhcchhcccccccccc
Confidence 9999999999999999865 999999999999999999999999986444
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=2.1e-38 Score=292.71 Aligned_cols=155 Identities=46% Similarity=0.742 Sum_probs=132.8
Q ss_pred hhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCCeEEEe
Q 041302 158 LLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMFEMYIY 237 (484)
Q Consensus 158 ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~yEl~Iy 237 (484)
|++++||+||||||||||||+..+.....+.+ .++.......+....|.+.+..+++++|||+.+||+++++.|+|+||
T Consensus 1 ~~~~~kl~LVLDLDeTLihs~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~ 79 (156)
T TIGR02250 1 LLREKKLHLVLDLDQTLIHTTKDPTLSEWEKY-DIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVY 79 (156)
T ss_pred CCcCCceEEEEeCCCCcccccccCccchhhhc-ccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEE
Confidence 57899999999999999999997654433222 11111111223445677778899999999999999999999999999
Q ss_pred cCCcHhHHHHHHhhhCCCCcccceeEEeecCCCCCccccccccCC-CCCcEEEEcCChhhhhcCCCCeEEecccccc
Q 041302 238 TMGDRPYALEMAKLLDPSREYFNARVISRDDGTQRHQKGLDVVLG-QESAVLILDDTENAWTKHRDNLILMERYHFF 313 (484)
Q Consensus 238 T~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~~~KdL~~l~~-~~~~vVIIDD~~~vw~~~~~NlI~I~py~fF 313 (484)
|++++.||.+|++.|||.+.+|++||++|++|...+.|||+.+++ ++++||||||++++|..|++|+|+|+||.||
T Consensus 80 T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~~~~~f 156 (156)
T TIGR02250 80 TMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGSPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYNYF 156 (156)
T ss_pred eCCcHHHHHHHHHHhCcCCCeeccEEEEeccCCCCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeCCcccC
Confidence 999999999999999999999999999999999999999977764 9999999999999999999999999999998
No 3
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=2.1e-32 Score=253.97 Aligned_cols=156 Identities=26% Similarity=0.374 Sum_probs=130.0
Q ss_pred ccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCCeEEEecCCcH
Q 041302 163 KLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMFEMYIYTMGDR 242 (484)
Q Consensus 163 KL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~r 242 (484)
|++||||||||||||+..+..... |..-...+......+||++|||+.+||++++++|||+|||+|++
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~------------~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~ 68 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDA------------DFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLE 68 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCC------------ceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcH
Confidence 689999999999999874311000 11000011112468999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCCcccceeEEeecCCC---CCccccccccCCCCCcEEEEcCChhhhhcCCCCeEEecccccccccccc
Q 041302 243 PYALEMAKLLDPSREYFNARVISRDDGT---QRHQKGLDVVLGQESAVLILDDTENAWTKHRDNLILMERYHFFASSCRQ 319 (484)
Q Consensus 243 ~YA~~I~~~LDP~~~~F~~RI~sRd~c~---~~~~KdL~~l~~~~~~vVIIDD~~~vw~~~~~NlI~I~py~fF~~~~~~ 319 (484)
.||++|++.|||.+.+|.+++ +|++|. ..+.|+|+.+..+++.+|||||++..|..+++|+|+|.||.
T Consensus 69 ~yA~~il~~ldp~~~~f~~~l-~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~-------- 139 (162)
T TIGR02251 69 EYADPVLDILDRGGKVISRRL-YRESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWF-------- 139 (162)
T ss_pred HHHHHHHHHHCcCCCEEeEEE-EccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCC--------
Confidence 999999999999988998765 599995 34899999999999999999999999999999999999998
Q ss_pred cCCcccccccccccchhhHHHHHHHHHHHHHHHH
Q 041302 320 FGYHCQSLSQLRSDESELEGALASVLKVLKRIHN 353 (484)
Q Consensus 320 ~g~~~~sl~e~~~de~~~D~~L~~l~~~L~~IH~ 353 (484)
| +.+|.+|..|+++|+.+..
T Consensus 140 -~-------------~~~D~~L~~l~~~L~~l~~ 159 (162)
T TIGR02251 140 -G-------------DPNDTELLNLIPFLEGLRF 159 (162)
T ss_pred -C-------------CCCHHHHHHHHHHHHHHhc
Confidence 2 4679999999999999864
No 4
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.97 E-value=7.4e-33 Score=273.27 Aligned_cols=172 Identities=27% Similarity=0.384 Sum_probs=144.6
Q ss_pred hhhcCccEEEEcCCCceeeecc-CCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCCeEEE
Q 041302 158 LLRHRKLYLILDLDHTLLNSTL-LLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMFEMYI 236 (484)
Q Consensus 158 ll~~rKL~LVLDLDeTLIhs~~-~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~yEl~I 236 (484)
+-..+|++|||||||||+|++. .+...++ |......+......+||.+|||+++||..++++||++|
T Consensus 84 ~~~~~kk~lVLDLDeTLvHss~~~~~~~~~------------d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~ 151 (262)
T KOG1605|consen 84 LATVGRKTLVLDLDETLVHSSLNLKPIVNA------------DFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELVL 151 (262)
T ss_pred cccCCCceEEEeCCCcccccccccCCCCCc------------ceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHHH
Confidence 3477899999999999999995 2211111 11111112222467999999999999999999999999
Q ss_pred ecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC---CccccccccCCCCCcEEEEcCChhhhhcCCCCeEEecccccc
Q 041302 237 YTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ---RHQKGLDVVLGQESAVLILDDTENAWTKHRDNLILMERYHFF 313 (484)
Q Consensus 237 yT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~---~~~KdL~~l~~~~~~vVIIDD~~~vw~~~~~NlI~I~py~fF 313 (484)
||++...||.+|+++|||.+++|.+|+| |++|.. .++|||..+.++++.||||||+|.+|..||+|+|+|++|.
T Consensus 152 FTAs~~~Ya~~v~D~LD~~~~i~~~Rly-R~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~NgIpI~sw~-- 228 (262)
T KOG1605|consen 152 FTASLEVYADPLLDILDPDRKIISHRLY-RDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENGIPIKSWF-- 228 (262)
T ss_pred HHhhhHHHHHHHHHHccCCCCeeeeeec-ccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccCCCcccccc--
Confidence 9999999999999999998889999998 999974 6899999999999999999999999999999999999998
Q ss_pred cccccccCCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhhhccCchhHHHHhhh
Q 041302 314 ASSCRQFGYHCQSLSQLRSDESELEGALASVLKVLKRIHNIFFDELANDLAGRDVRQVLKMV 375 (484)
Q Consensus 314 ~~~~~~~g~~~~sl~e~~~de~~~D~~L~~l~~~L~~IH~~ff~~~~~~~~~~DVr~IL~~l 375 (484)
.+..|.+|++|+++|+.+- ...|||.++...
T Consensus 229 --------------------~d~~D~eLL~LlpfLe~L~-----------~~~Dvr~~l~~~ 259 (262)
T KOG1605|consen 229 --------------------DDPTDTELLKLLPFLEALA-----------FVDDVRPILARR 259 (262)
T ss_pred --------------------cCCChHHHHHHHHHHHHhc-----------ccccHHHHHHHh
Confidence 1567999999999999985 247999998763
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.97 E-value=1.5e-30 Score=239.10 Aligned_cols=149 Identities=30% Similarity=0.398 Sum_probs=112.6
Q ss_pred cEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCCeEEEecCCcHh
Q 041302 164 LYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMFEMYIYTMGDRP 243 (484)
Q Consensus 164 L~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~r~ 243 (484)
++|||||||||||+...+... . +... .. ....+++++|||+++||+.++++|||+|||+|++.
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~-~------------~~~~---~~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ 63 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLP-Y------------DFKI---ID-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEE 63 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT--------------SEEE---ET-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HH
T ss_pred CEEEEeCCCcEEEEeecCCCC-c------------ccce---ec-cccceeEeeCchHHHHHHHHHHhceEEEEEeehhh
Confidence 589999999999999854220 0 0000 01 24578999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCcccceeEEeecCCCC---CccccccccCCCCCcEEEEcCChhhhhcCCCCeEEeccccccccccccc
Q 041302 244 YALEMAKLLDPSREYFNARVISRDDGTQ---RHQKGLDVVLGQESAVLILDDTENAWTKHRDNLILMERYHFFASSCRQF 320 (484)
Q Consensus 244 YA~~I~~~LDP~~~~F~~RI~sRd~c~~---~~~KdL~~l~~~~~~vVIIDD~~~vw~~~~~NlI~I~py~fF~~~~~~~ 320 (484)
||.+|++.|||++.+|.+ +++|++|.. .+.|||++++.+.+.||||||++.+|..+++|+|+|+||.
T Consensus 64 ya~~v~~~ldp~~~~~~~-~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~--------- 133 (159)
T PF03031_consen 64 YAEPVLDALDPNGKLFSR-RLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFF--------- 133 (159)
T ss_dssp HHHHHHHHHTTTTSSEEE-EEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----S---------
T ss_pred hhhHHHHhhhhhcccccc-ccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEecccc---------
Confidence 999999999999889965 556999952 3479999998889999999999999988899999999987
Q ss_pred CCcccccccccccch-hhHHHHHHHHHHHHHHH
Q 041302 321 GYHCQSLSQLRSDES-ELEGALASVLKVLKRIH 352 (484)
Q Consensus 321 g~~~~sl~e~~~de~-~~D~~L~~l~~~L~~IH 352 (484)
| + .+|++|..|+++|+.+.
T Consensus 134 ~-------------~~~~D~~L~~l~~~L~~l~ 153 (159)
T PF03031_consen 134 G-------------DTPNDRELLRLLPFLEELA 153 (159)
T ss_dssp S-------------CHTT--HHHHHHHHHHHHH
T ss_pred C-------------CCcchhHHHHHHHHHHHhC
Confidence 2 2 67999999999999997
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.94 E-value=1.1e-26 Score=221.43 Aligned_cols=158 Identities=19% Similarity=0.252 Sum_probs=125.6
Q ss_pred hhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCCeEEEe
Q 041302 158 LLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMFEMYIY 237 (484)
Q Consensus 158 ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~yEl~Iy 237 (484)
....+|++||||||+||||+.... ...|+.+|||+++||+.++++|||+||
T Consensus 16 ~~~~~kklLVLDLDeTLvh~~~~~-----------------------------~~~~~~kRP~l~eFL~~~~~~feIvVw 66 (195)
T TIGR02245 16 PPREGKKLLVLDIDYTLFDHRSPA-----------------------------ETGEELMRPYLHEFLTSAYEDYDIVIW 66 (195)
T ss_pred CCCCCCcEEEEeCCCceEcccccC-----------------------------CCceEEeCCCHHHHHHHHHhCCEEEEE
Confidence 345688999999999999975311 125689999999999999999999999
Q ss_pred cCCcHhHHHHHHhhhCCCCc-ccceeEEeecCCC---------CC-ccccccccCC------CCCcEEEEcCChhhhhcC
Q 041302 238 TMGDRPYALEMAKLLDPSRE-YFNARVISRDDGT---------QR-HQKGLDVVLG------QESAVLILDDTENAWTKH 300 (484)
Q Consensus 238 T~g~r~YA~~I~~~LDP~~~-~F~~RI~sRd~c~---------~~-~~KdL~~l~~------~~~~vVIIDD~~~vw~~~ 300 (484)
|+++..||+.+++.|++.+. .|.-+. .++.|. .. ++|+|+.+.+ +++.+|||||++.++..|
T Consensus 67 TAa~~~ya~~~l~~l~~~~~~~~~i~~-~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~ 145 (195)
T TIGR02245 67 SATSMKWIEIKMTELGVLTNPNYKITF-LLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMN 145 (195)
T ss_pred ecCCHHHHHHHHHHhcccCCccceEEE-EeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcC
Confidence 99999999999999976431 233333 356662 12 4899998732 678999999999999999
Q ss_pred CCCeEEecccccccccccccCCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhhhccCchhHHHHhh
Q 041302 301 RDNLILMERYHFFASSCRQFGYHCQSLSQLRSDESELEGALASVLKVLKRIHNIFFDELANDLAGRDVRQVLKM 374 (484)
Q Consensus 301 ~~NlI~I~py~fF~~~~~~~g~~~~sl~e~~~de~~~D~~L~~l~~~L~~IH~~ff~~~~~~~~~~DVr~IL~~ 374 (484)
|+|+|+|+||.. .. ..+.+|.+|..|+++|+.|.. ..|||.+...
T Consensus 146 P~N~i~I~~f~~-~~-----------------~~~~~D~eL~~L~~yL~~la~-----------~~Dvr~~~~~ 190 (195)
T TIGR02245 146 PQNGLKIRPFKK-AH-----------------ANRGTDQELLKLTQYLKTIAE-----------LEDFSSLDHK 190 (195)
T ss_pred CCCccccCCccc-cC-----------------CCCcccHHHHHHHHHHHHHhc-----------Ccccchhhhc
Confidence 999999999971 10 014689999999999999973 6799988763
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.89 E-value=4.5e-23 Score=188.37 Aligned_cols=143 Identities=34% Similarity=0.423 Sum_probs=115.2
Q ss_pred CccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCCeEEEecCCc
Q 041302 162 RKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMFEMYIYTMGD 241 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~ 241 (484)
||++||||||+||||+...+.. ++. + .+.+....+......+++++|||+.+||+.|.+.|+|.|||++.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~---~~~---~----~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~ 70 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFK---EWT---N----RDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGL 70 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCC---CCC---c----cceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCc
Confidence 6999999999999999752211 110 0 01111112223356799999999999999999999999999999
Q ss_pred HhHHHHHHhhhCCCCcccceeEEeecCCCC---CccccccccCCCCCcEEEEcCChhhhhcCCCCeEEecccccccc
Q 041302 242 RPYALEMAKLLDPSREYFNARVISRDDGTQ---RHQKGLDVVLGQESAVLILDDTENAWTKHRDNLILMERYHFFAS 315 (484)
Q Consensus 242 r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~---~~~KdL~~l~~~~~~vVIIDD~~~vw~~~~~NlI~I~py~fF~~ 315 (484)
+.||+.+++.+|+.+.+| .+|+++++|.. .+.|+|+++..+.+.+|+|||++..|..++.|+|.|+||.++..
T Consensus 71 ~~~~~~il~~l~~~~~~f-~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~~~~~ 146 (148)
T smart00577 71 RMYADPVLDLLDPKKYFG-YRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWFGDPD 146 (148)
T ss_pred HHHHHHHHHHhCcCCCEe-eeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCcCCCCC
Confidence 999999999999976445 67999999853 37889998888899999999999999999999999999996553
No 8
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.87 E-value=4.2e-22 Score=201.11 Aligned_cols=159 Identities=22% Similarity=0.355 Sum_probs=141.7
Q ss_pred hhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCCeEEEe
Q 041302 158 LLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMFEMYIY 237 (484)
Q Consensus 158 ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~yEl~Iy 237 (484)
...+.++||||+|.++|||..+.-. ..+.+++|||++.||..++++|||+||
T Consensus 184 Py~Qp~yTLVleledvLVhpdws~~----------------------------tGwRf~kRPgvD~FL~~~a~~yEIVi~ 235 (393)
T KOG2832|consen 184 PYEQPPYTLVLELEDVLVHPDWSYK----------------------------TGWRFKKRPGVDYFLGHLAKYYEIVVY 235 (393)
T ss_pred cccCCCceEEEEeeeeEeccchhhh----------------------------cCceeccCchHHHHHHhhcccceEEEE
Confidence 3455789999999999999987310 347899999999999999999999999
Q ss_pred cCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC---CccccccccCCCCCcEEEEcCChhhhhcCCCCeEEeccccccc
Q 041302 238 TMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ---RHQKGLDVVLGQESAVLILDDTENAWTKHRDNLILMERYHFFA 314 (484)
Q Consensus 238 T~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~---~~~KdL~~l~~~~~~vVIIDD~~~vw~~~~~NlI~I~py~fF~ 314 (484)
|.....||..+++.|||.| +++.|++ |+.|.. .++|||+.|.+++++||+||-++.....||+|.|.++||.
T Consensus 236 sse~gmt~~pl~d~lDP~g-~IsYkLf-r~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W~--- 310 (393)
T KOG2832|consen 236 SSEQGMTVFPLLDALDPKG-YISYKLF-RGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPWS--- 310 (393)
T ss_pred ecCCccchhhhHhhcCCcc-eEEEEEe-cCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccCcCC---
Confidence 9999999999999999997 7889998 988853 6899999999999999999999999999999999999998
Q ss_pred ccccccCCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhhhccCchhHHHHhhhhc
Q 041302 315 SSCRQFGYHCQSLSQLRSDESELEGALASVLKVLKRIHNIFFDELANDLAGRDVRQVLKMVRG 377 (484)
Q Consensus 315 ~~~~~~g~~~~sl~e~~~de~~~D~~L~~l~~~L~~IH~~ff~~~~~~~~~~DVr~IL~~lr~ 377 (484)
| +++|+.|..|+.+|+.||+ .+..|||.+|.....
T Consensus 311 ------G-------------n~dDt~L~dL~~FL~~ia~---------~~~eDvR~vL~~y~~ 345 (393)
T KOG2832|consen 311 ------G-------------NDDDTSLFDLLAFLEYIAQ---------QQVEDVRPVLQSYSQ 345 (393)
T ss_pred ------C-------------CcccchhhhHHHHHHHHHH---------ccHHHHHHHHHHhcc
Confidence 4 6789999999999999995 246799999887653
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.84 E-value=1.2e-21 Score=202.57 Aligned_cols=300 Identities=22% Similarity=0.332 Sum_probs=219.9
Q ss_pred ccCHHHHHHHHhhhhhhhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhc-cccccccccccceeeeeceeEEEEecc
Q 041302 141 RLGNDEIDRLRNTDMKHLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKS-QADSLQDVSKGSLFMLAFMNMMTKLRP 219 (484)
Q Consensus 141 ~vs~~ea~~~~~~~~~~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~-~~~~~~d~~~~~~f~l~~~~~~vklRP 219 (484)
.++..+|.+.+.+.+.+|-..+++.||+|||+|.+||+..+..+...++... ...+..+ ..+....+.|++|.||
T Consensus 4 ~i~~~~~~~~~~~~~~~l~q~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~k~~~ 79 (390)
T COG5190 4 NISHEEASRTKKESMEALRQDKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVND----RDPVQEKCAYYVKARP 79 (390)
T ss_pred eeEeeehhhhhhhHHHHhhcCcccccccccccceecccccCCCCCchhhhhhccccchhc----cccccccccceeeecc
Confidence 6788899999999999999999999999999999999987622222111000 0001111 1122235789999999
Q ss_pred cHHHHHHHhhhCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCCCccccccccCC-CCCcEEEEcCChhhh-
Q 041302 220 FVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQRHQKGLDVVLG-QESAVLILDDTENAW- 297 (484)
Q Consensus 220 gl~eFL~~ls~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~~~KdL~~l~~-~~~~vVIIDD~~~vw- 297 (484)
++..|+...++.||+++||||++.||..+++++||.|.+|++|+.+|+......+|.++++++ +.++++|+||++++|
T Consensus 80 ~l~~~~~~i~~~~e~~~~~~~~~~~~~~~~~i~d~~g~~~~d~~~~~~~~~~~~~~s~~~l~p~~~n~~vi~~d~~~~~~ 159 (390)
T COG5190 80 KLFPFLTKISPLYELHIYTMGTRAYAERIAKIIDPTGKLFNDRILSRDESGSLSQKSLSRLFPKDQNMVVIIDDRGDVWG 159 (390)
T ss_pred cccchhhhhchhcceeeEeeccccchhhhhhcccccccccccccccccccccchhhhhhhcCccccccccccccccccCC
Confidence 999999999999999999999999999999999999999999999999998889999999985 899999999999999
Q ss_pred --hcCCCCeEEeccccccccccc-------------ccCCc------------ccccc----c----------------c
Q 041302 298 --TKHRDNLILMERYHFFASSCR-------------QFGYH------------CQSLS----Q----------------L 330 (484)
Q Consensus 298 --~~~~~NlI~I~py~fF~~~~~-------------~~g~~------------~~sl~----e----------------~ 330 (484)
.. ..|++...|+.++..... ..|.. .+.+. + .
T Consensus 160 ~~d~-~~~~v~~~~~~~~~~~~~i~d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~ 238 (390)
T COG5190 160 VGDM-NSNFVAKSPFSKYESDKDIVDLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLV 238 (390)
T ss_pred ccch-hhhhhcccccccccccccccCcccccchhhhhcccccccchhhcCCCCccccccCCCccceeeccccccccchhh
Confidence 43 468899888655554211 00100 00000 0 0
Q ss_pred cccch--------hhHHHHHHHHHHHHHHHHHHHhhhhhhccCchhHHHHhhhhcccccceeeeeeeccCCCCCcchHHH
Q 041302 331 RSDES--------ELEGALASVLKVLKRIHNIFFDELANDLAGRDVRQVLKMVRGEVLKGCKLVFSHVFPTKFPADTHYL 402 (484)
Q Consensus 331 ~~de~--------~~D~~L~~l~~~L~~IH~~ff~~~~~~~~~~DVr~IL~~lr~~vL~G~~IvfSG~~p~~~~~~~~~l 402 (484)
..+.. ..+.+|.+++..|.++|.-+|...........|..+|+..| +|++|.+.++++++.+. .- .+|
T Consensus 239 ~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc~~~~G~-~i-kDi 314 (390)
T COG5190 239 KVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESCVSYLGV-YI-KDI 314 (390)
T ss_pred ccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhccccc--eeehhhhcccceeccCc-hh-hhH
Confidence 00111 35789999999999999887765443223345889999888 99999999999998873 11 123
Q ss_pred HHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhhHHHHHHhcCCCCCCCCCCC
Q 041302 403 WKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWIETANFLWQRQPEENFPVQ 468 (484)
Q Consensus 403 ~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~WL~~c~~~w~r~dE~~Y~l~ 468 (484)
.++ | .+-.-||+|+.++.+- +....+.|+.+.|+.+ ++.+|..+.+.
T Consensus 315 s~i----~------r~l~~viiId~~p~SY----~~~p~~~i~i~~W~~d-----~~d~el~~ll~ 361 (390)
T COG5190 315 SKI----G------RSLDKVIIIDNSPASY----EFHPENAIPIEKWISD-----EHDDELLNLLP 361 (390)
T ss_pred Hhh----c------cCCCceEEeeCChhhh----hhCccceeccCccccc-----ccchhhhhhcc
Confidence 322 2 3345799999888766 3345578999999998 56666666654
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.76 E-value=5.6e-19 Score=182.85 Aligned_cols=169 Identities=24% Similarity=0.368 Sum_probs=137.9
Q ss_pred hcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCCeEEEecC
Q 041302 160 RHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMFEMYIYTM 239 (484)
Q Consensus 160 ~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~ 239 (484)
...+.+|++|||+||+|+.... .+..+ +. ...........+||..||++.+||..++++|++++||+
T Consensus 209 ~~~~k~L~l~lde~l~~S~~~~-~~~~d-f~-----------~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~ 275 (390)
T COG5190 209 TSPKKTLVLDLDETLVHSSFRY-ITLLD-FL-----------VKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTA 275 (390)
T ss_pred CCCccccccCCCccceeecccc-ccccc-hh-----------hccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEec
Confidence 4567899999999999999742 12111 10 00011111256999999999999999999999999999
Q ss_pred CcHhHHHHHHhhhCCCCcccceeEEeecCCCC---CccccccccCCCCCcEEEEcCChhhhhcCCCCeEEeccccccccc
Q 041302 240 GDRPYALEMAKLLDPSREYFNARVISRDDGTQ---RHQKGLDVVLGQESAVLILDDTENAWTKHRDNLILMERYHFFASS 316 (484)
Q Consensus 240 g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~---~~~KdL~~l~~~~~~vVIIDD~~~vw~~~~~NlI~I~py~fF~~~ 316 (484)
..+.||++|+++||+.+ .|++|+| |..|.. .++|||..++.+...++|||++|..|..++.|+|+|.+|.
T Consensus 276 s~~~y~~~v~d~l~~~k-~~~~~lf-r~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i~~W~----- 348 (390)
T COG5190 276 SVKRYADPVLDILDSDK-VFSHRLF-RESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPIEKWI----- 348 (390)
T ss_pred chhhhcchHHHhccccc-eeehhhh-cccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceeccCccc-----
Confidence 99999999999999998 8888888 999964 4889999999999999999999999999999999999998
Q ss_pred ccccCCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhhhccCchhHHHHhh
Q 041302 317 CRQFGYHCQSLSQLRSDESELEGALASVLKVLKRIHNIFFDELANDLAGRDVRQVLKM 374 (484)
Q Consensus 317 ~~~~g~~~~sl~e~~~de~~~D~~L~~l~~~L~~IH~~ff~~~~~~~~~~DVr~IL~~ 374 (484)
+++.|.+|.+++.+|..+-. -...||+.++..
T Consensus 349 -----------------~d~~d~el~~ll~~le~L~~---------~~~~d~~~~l~~ 380 (390)
T COG5190 349 -----------------SDEHDDELLNLLPFLEDLPD---------RDLKDVSSILQS 380 (390)
T ss_pred -----------------ccccchhhhhhccccccccc---------ccchhhhhhhhh
Confidence 14678999999999988842 235677777654
No 11
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.47 E-value=6.4e-14 Score=109.74 Aligned_cols=63 Identities=27% Similarity=0.379 Sum_probs=54.1
Q ss_pred eeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhh
Q 041302 383 CKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRW 449 (484)
Q Consensus 383 ~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~W 449 (484)
|+|+|||+.+.+ +..++++++.+||++..+++.++|||||.+..+.|++.|.++||+||+|+|
T Consensus 1 ~~i~~sg~~~~~----~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKE----RSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTT----CCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHH----HHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 589999986654 679999999999999999999999999999999999999999999999999
No 12
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.45 E-value=5.9e-14 Score=141.81 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=90.2
Q ss_pred hhcccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhhHHHHH
Q 041302 375 VRGEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWIETAN 454 (484)
Q Consensus 375 lr~~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~WL~~c~ 454 (484)
--.++|+|+++|+||+ ..|.++.|...|..|||++..|.+...|||||+.++|.||++...+|..||+-+||++|.
T Consensus 313 el~klL~GVV~VlSGf----qNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy 388 (508)
T KOG3226|consen 313 ELSKLLEGVVFVLSGF----QNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECY 388 (508)
T ss_pred hHHHhhhceEEEEecc----cCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHH
Confidence 3467899999999998 478899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCCCCCcchh
Q 041302 455 FLWQRQPEENFPVQQTKPEENF 476 (484)
Q Consensus 455 ~~w~r~dE~~Y~l~~~~~~~~~ 476 (484)
...+++|-..|+|..+++-.+-
T Consensus 389 ~~kk~lp~rrYlm~~~~p~~p~ 410 (508)
T KOG3226|consen 389 AQKKLLPIRRYLMHAGKPWRPS 410 (508)
T ss_pred HHHhhccHHHHHhcCCCCCCCC
Confidence 9999999999999877654433
No 13
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.43 E-value=3.5e-13 Score=108.20 Aligned_cols=75 Identities=25% Similarity=0.445 Sum_probs=67.9
Q ss_pred hcccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCC--CChHHHHHHhcCCeeeChhhHHHH
Q 041302 376 RGEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDA--RTEKSRWAAKEAKFLVDPRWIETA 453 (484)
Q Consensus 376 r~~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~--~T~K~~~A~~~gi~IV~~~WL~~c 453 (484)
+.++|+||.|++++. + ...+..+.++++.+||++...+++.+||||+.+. .+.|+..|...|++||+++||.+|
T Consensus 2 ~~~~F~g~~f~i~~~-~---~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~c 77 (78)
T PF00533_consen 2 KPKIFEGCTFCISGF-D---SDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDC 77 (78)
T ss_dssp STTTTTTEEEEESST-S---SSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHH
T ss_pred CCCCCCCEEEEEccC-C---CCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHh
Confidence 568999999999554 2 3467899999999999999999999999999987 899999999999999999999999
Q ss_pred H
Q 041302 454 N 454 (484)
Q Consensus 454 ~ 454 (484)
+
T Consensus 78 i 78 (78)
T PF00533_consen 78 I 78 (78)
T ss_dssp H
T ss_pred C
Confidence 6
No 14
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.29 E-value=9.7e-12 Score=98.37 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=66.0
Q ss_pred ccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCC-CccEEEEcCCCChH--HHHHHhcCCeeeChhhHHHHH
Q 041302 378 EVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDP-SVTHVVSTDARTEK--SRWAAKEAKFLVDPRWIETAN 454 (484)
Q Consensus 378 ~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~-~vTHlVa~~~~T~K--~~~A~~~gi~IV~~~WL~~c~ 454 (484)
.+|+|++|+|+|-+ ....+..+++++..+||++...+++ .+||+|+.+....+ ++.|...+++||+++||.+|+
T Consensus 1 ~~f~g~~~~~~g~~---~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~ 77 (80)
T smart00292 1 KLFKGKVFVITGKF---DKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCL 77 (80)
T ss_pred CccCCeEEEEeCCC---CCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHH
Confidence 47999999999921 2456789999999999999999998 99999999876554 477778999999999999998
Q ss_pred Hhc
Q 041302 455 FLW 457 (484)
Q Consensus 455 ~~w 457 (484)
..|
T Consensus 78 ~~~ 80 (80)
T smart00292 78 KAG 80 (80)
T ss_pred HCc
Confidence 764
No 15
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.26 E-value=1.9e-11 Score=94.49 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=62.9
Q ss_pred ceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChH-HHHHHhcCCeeeChhhHHHHH
Q 041302 382 GCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEK-SRWAAKEAKFLVDPRWIETAN 454 (484)
Q Consensus 382 G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K-~~~A~~~gi~IV~~~WL~~c~ 454 (484)
||.|+|+|..+ ...+..+.+++..+||++..++++.+||+|+....+.+ +..|...|++||+++||.+|+
T Consensus 1 ~~~~~i~g~~~---~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~ 71 (72)
T cd00027 1 GLTFVITGDLP---SEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCL 71 (72)
T ss_pred CCEEEEEecCC---CcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHh
Confidence 78999999865 34678999999999999999999999999999887665 788888999999999999996
No 16
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.64 E-value=5.2e-08 Score=110.19 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=79.3
Q ss_pred hhcccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcC-----CCChHHHHHHhcCCeeeChhh
Q 041302 375 VRGEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTD-----ARTEKSRWAAKEAKFLVDPRW 449 (484)
Q Consensus 375 lr~~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~-----~~T~K~~~A~~~gi~IV~~~W 449 (484)
....+|.|++|||+|.++. .+..+..+++.+||+++..+ .++||+|++. +|+.|+.+|.+.||+||+.+|
T Consensus 185 ~~~kpL~G~~fviTGtl~~----sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~ 259 (815)
T PLN03122 185 APGKPFSGMMISLSGRLSR----THQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAW 259 (815)
T ss_pred ccCCCcCCcEEEEeCCCCC----CHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHH
Confidence 4566899999999998753 46899999999999999999 5788999886 345899999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCC
Q 041302 450 IETANFLWQRQPEENFPVQ 468 (484)
Q Consensus 450 L~~c~~~w~r~dE~~Y~l~ 468 (484)
|.+|+...+.+++..|.+.
T Consensus 260 L~d~i~~~k~~~~~~y~l~ 278 (815)
T PLN03122 260 LIDSIEKQEAQPLEAYDVV 278 (815)
T ss_pred HHHHHhcCCcccchhhhhc
Confidence 9999999999999999984
No 17
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.52 E-value=1.6e-07 Score=108.22 Aligned_cols=90 Identities=12% Similarity=0.098 Sum_probs=79.8
Q ss_pred hhcccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcC---CCChHHHHHHhcCCeeeChhhHH
Q 041302 375 VRGEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTD---ARTEKSRWAAKEAKFLVDPRWIE 451 (484)
Q Consensus 375 lr~~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~---~~T~K~~~A~~~gi~IV~~~WL~ 451 (484)
...++|+|++|+++|.++.. ...+.+.++.+||+++..++..+||||+.. ....|+++|.+.||+||+.+||.
T Consensus 389 ~~~~~l~~~~i~i~G~~~~~----~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ 464 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKEK----VTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLV 464 (981)
T ss_pred ccCCCcCCeEEEEecCCCCc----HHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHH
Confidence 45688999999999987642 367788999999999999999999999984 35688999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCC
Q 041302 452 TANFLWQRQPEENFPVQ 468 (484)
Q Consensus 452 ~c~~~w~r~dE~~Y~l~ 468 (484)
+|.....++|+..|.+.
T Consensus 465 ds~~~~~~~p~~~y~~~ 481 (981)
T PLN03123 465 DCFKKKKKLPFDKYKLE 481 (981)
T ss_pred HHHhccccCcchhhhhc
Confidence 99999999999999775
No 18
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=97.98 E-value=8.8e-06 Score=92.00 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=89.5
Q ss_pred chhHHHHhhhhcccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCC-CChHHHHHHhcCCee
Q 041302 366 RDVRQVLKMVRGEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDA-RTEKSRWAAKEAKFL 444 (484)
Q Consensus 366 ~DVr~IL~~lr~~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~-~T~K~~~A~~~gi~I 444 (484)
.........++..++.||.||.+|+ ...+++.+..++..+||+....++..|+|++.... .|+||.+|++++++|
T Consensus 90 ~~~~~l~~~~~~p~~~~~~Vc~tgl----~~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn~~v 165 (811)
T KOG1929|consen 90 RLLDPLRDTMKCPGFFGLKVCLTGL----SGDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWNIPV 165 (811)
T ss_pred ccCccchhhhcCCcccceEEEeccc----chHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhCCcc
Confidence 4455667778999999999999998 34578999999999999999999999999888764 569999999999999
Q ss_pred eChhhHHHHHHhcCCCCCCCCCCCC
Q 041302 445 VDPRWIETANFLWQRQPEENFPVQQ 469 (484)
Q Consensus 445 V~~~WL~~c~~~w~r~dE~~Y~l~~ 469 (484)
|+.+|+++|..+...++...|.+..
T Consensus 166 ~~~~w~~~s~~~~~~~~~~~~e~~~ 190 (811)
T KOG1929|consen 166 VSDDWLFDSIEKTAVLETKPYEGAP 190 (811)
T ss_pred ccHHHHhhhhccccccccccccccc
Confidence 9999999999999999999999865
No 19
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.98 E-value=1.5e-05 Score=89.36 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=65.6
Q ss_pred ccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhhHHH
Q 041302 378 EVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWIET 452 (484)
Q Consensus 378 ~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~WL~~ 452 (484)
.+|.|.++||||.++.. .|..+.++++++||+++..++++|+.||+....+.|..+|.+.||+|++.+.+.+
T Consensus 592 ~~l~gktfV~TG~l~~~---~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~ 663 (669)
T PRK14350 592 SFLFGKKFCITGSFNGY---SRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKS 663 (669)
T ss_pred CccCCcEEEEecccCCC---CHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHH
Confidence 35999999999988654 5789999999999999999999999999998777999999999999999998876
No 20
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=97.97 E-value=2.8e-06 Score=92.72 Aligned_cols=99 Identities=16% Similarity=0.295 Sum_probs=83.9
Q ss_pred cccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhhHHHHHHh
Q 041302 377 GEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWIETANFL 456 (484)
Q Consensus 377 ~~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~WL~~c~~~ 456 (484)
...|+|++.||+|..+.. ..+..++..|||.|..+.+.++||+||.+.+..|++.|.-. .+++.|+|+.+|
T Consensus 116 ~~~m~~vvlcfTg~rkk~-----e~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t~-~~~~rp~wv~~a--- 186 (850)
T KOG3524|consen 116 CELMKDVVMCFTGERKKK-----EELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALVG-VPTMRPDWVTEA--- 186 (850)
T ss_pred chhhcCceeeeeccchhh-----HHHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEeec-cceechHhhhhh---
Confidence 357899999999987664 38999999999999999999999999999999998877666 999999999999
Q ss_pred cCCCCCCCCCCCCCCCcchhhhhhcccC
Q 041302 457 WQRQPEENFPVQQTKPEENFHAKQMKDQ 484 (484)
Q Consensus 457 w~r~dE~~Y~l~~~~~~~~~~~~~~~~q 484 (484)
|++.++..|.+..+...-.++.+-+.+|
T Consensus 187 w~~rn~~yfda~~~~f~d~hrl~~feg~ 214 (850)
T KOG3524|consen 187 WKHRNDSYFDAMEPCFVDKHRLGVFEGL 214 (850)
T ss_pred hcCcchhhhhhhccchhhhhccccccCC
Confidence 9999998888877766666655555443
No 21
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=97.92 E-value=2.3e-05 Score=80.61 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=62.7
Q ss_pred cccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCC--hHHHHHHhcCCeeeChhhHHHH
Q 041302 379 VLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDART--EKSRWAAKEAKFLVDPRWIETA 453 (484)
Q Consensus 379 vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T--~K~~~A~~~gi~IV~~~WL~~c 453 (484)
+|.|.+|||||-+.. .+..++++++.+||.+.+.++++|+.||+++..+ .|.++|.+.||+|++.+=+.+=
T Consensus 232 l~~g~~~v~TG~l~~----~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~l 304 (313)
T PRK06063 232 LVQGMRVALSAEVSR----THEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLEL 304 (313)
T ss_pred ccCCCEEEEecCCCC----CHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHH
Confidence 479999999998752 5789999999999999999999999999997644 7999999999999998766553
No 22
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=97.91 E-value=4e-05 Score=86.11 Aligned_cols=87 Identities=17% Similarity=0.078 Sum_probs=73.0
Q ss_pred chhHHHHhhhhc-----------ccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHH
Q 041302 366 RDVRQVLKMVRG-----------EVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKS 434 (484)
Q Consensus 366 ~DVr~IL~~lr~-----------~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~ 434 (484)
++.+.+|..++. ..|.|.+|||||.++.. .+..+..+++.+||.++.+++++|+.||+....+.|.
T Consensus 566 ~~~~~~i~~L~~~gv~~~~~~~~~~~~g~~~v~TG~l~~~---~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~ 642 (665)
T PRK07956 566 EENRELIDELLEAGVNMEYKGEEVDLAGKTVVLTGTLEQL---SRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKL 642 (665)
T ss_pred hhHHHHHHHHHHcCCCccccccCCCccccEEEEeCCCCCC---CHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHH
Confidence 455666665543 12889999999988643 4789999999999999999999999999998777999
Q ss_pred HHHHhcCCeeeChhhHHHHHH
Q 041302 435 RWAAKEAKFLVDPRWIETANF 455 (484)
Q Consensus 435 ~~A~~~gi~IV~~~WL~~c~~ 455 (484)
.+|.+.||+|++.+-+.+.+.
T Consensus 643 ~kA~~lgI~ii~E~~f~~~l~ 663 (665)
T PRK07956 643 AKAQELGIEVLDEEEFLRLLG 663 (665)
T ss_pred HHHHHcCCeEEcHHHHHHHHh
Confidence 999999999999988877653
No 23
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.89 E-value=4.1e-05 Score=86.22 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=66.0
Q ss_pred ccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCC-hHHHHHHhcCCeeeChhhHHHHHH
Q 041302 378 EVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDART-EKSRWAAKEAKFLVDPRWIETANF 455 (484)
Q Consensus 378 ~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T-~K~~~A~~~gi~IV~~~WL~~c~~ 455 (484)
..|.|.++||||.+... .+..+..+++.+||++.++++++|+.||+....+ .|..+|.+.||+|++.+.+.+=+.
T Consensus 608 ~~l~g~~~v~TG~l~~~---~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~ 683 (689)
T PRK14351 608 DALDGLTFVFTGSLSGY---TRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLA 683 (689)
T ss_pred CCCCCcEEEEccCCCCC---CHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHH
Confidence 35999999999988654 5789999999999999999999999999997544 899999999999999988877544
No 24
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=97.81 E-value=1.5e-05 Score=90.16 Aligned_cols=101 Identities=20% Similarity=0.224 Sum_probs=88.9
Q ss_pred hhHHHHhhhhcccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeC
Q 041302 367 DVRQVLKMVRGEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVD 446 (484)
Q Consensus 367 DVr~IL~~lr~~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~ 446 (484)
-++.+....-.++|.||.|++++. ...++.-+...+..+||.....+....||||+.+.+..|+..|.+++++||+
T Consensus 481 ~~~~vp~~~l~~~~e~~~~~~s~~----~~~~~e~ln~~~~~~gas~~~~f~r~~~~l~~~~~k~s~~~~~~kw~ip~vT 556 (811)
T KOG1929|consen 481 NLRPVPAAALSQPFENLTISNSQS----AEAEREKLNNLANDLGASNVKTFTRKSTTLLTTSAKGSKYEIAGKWSIPIVT 556 (811)
T ss_pred hcCcchhhcccccccCceEEeeec----hHHHHHHHhHhhhhccccccceeeecccEEeccccccchhhhccccCCCccC
Confidence 455666667789999999999974 2346778889999999999999998889999999999999999999999999
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCCCC
Q 041302 447 PRWIETANFLWQRQPEENFPVQQTK 471 (484)
Q Consensus 447 ~~WL~~c~~~w~r~dE~~Y~l~~~~ 471 (484)
|+||..|..+.++.+.+.|......
T Consensus 557 ~~wL~e~~rq~~~~~~e~~l~~~st 581 (811)
T KOG1929|consen 557 PDWLYECVRQNKGERNEGFLNGNST 581 (811)
T ss_pred hhHHHhhccccCcccceeecccccc
Confidence 9999999999999999999986544
No 25
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.79 E-value=2.2e-05 Score=70.06 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=57.6
Q ss_pred EecccHHHHHHHhh-hCCeEEEecCC-cHhHHHHHHhhhCC------CCcccceeEEeecCCCC--CccccccccC--CC
Q 041302 216 KLRPFVHTFLKEAS-EMFEMYIYTMG-DRPYALEMAKLLDP------SREYFNARVISRDDGTQ--RHQKGLDVVL--GQ 283 (484)
Q Consensus 216 klRPgl~eFL~~ls-~~yEl~IyT~g-~r~YA~~I~~~LDP------~~~~F~~RI~sRd~c~~--~~~KdL~~l~--~~ 283 (484)
++.||+.++|+.+. ..+.+.|.|++ .+.|+..+++.+.+ -..+|.. +++.++.+. .+.+-+.++. -.
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~-~~~~~~~pkp~~~~~a~~~lg~~~~ 107 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDP-LTIGYWLPKSPRLVEIALKLNGVLK 107 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhh-hhhcCCCcHHHHHHHHHHHhcCCCC
Confidence 68899999999995 46999999999 99999999988763 1235543 333333222 2444555566 57
Q ss_pred CCcEEEEcCChhh
Q 041302 284 ESAVLILDDTENA 296 (484)
Q Consensus 284 ~~~vVIIDD~~~v 296 (484)
.+.+++|||++..
T Consensus 108 p~~~l~igDs~~n 120 (128)
T TIGR01681 108 PKSILFVDDRPDN 120 (128)
T ss_pred cceEEEECCCHhH
Confidence 7899999998753
No 26
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=97.78 E-value=5.4e-05 Score=77.61 Aligned_cols=72 Identities=14% Similarity=0.117 Sum_probs=61.3
Q ss_pred ccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcC---------CCChHHHHHHhc-----CCe
Q 041302 378 EVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTD---------ARTEKSRWAAKE-----AKF 443 (484)
Q Consensus 378 ~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~---------~~T~K~~~A~~~-----gi~ 443 (484)
..|.|.++||||.+... .+..+..+++.+||.+.+.++.+||.||++. ..+.|.++|.+. ||+
T Consensus 219 ~~l~g~~~vfTG~l~~~---~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ 295 (309)
T PRK06195 219 TAFKEEVVVFTGGLASM---TRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIK 295 (309)
T ss_pred ccccCCEEEEccccCCC---CHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcE
Confidence 46999999999998543 4789999999999999999999999999984 246899999886 899
Q ss_pred eeChhhHHH
Q 041302 444 LVDPRWIET 452 (484)
Q Consensus 444 IV~~~WL~~ 452 (484)
|++.+=+++
T Consensus 296 ii~E~~f~~ 304 (309)
T PRK06195 296 FLNEEEFLQ 304 (309)
T ss_pred EecHHHHHH
Confidence 998764443
No 27
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=97.74 E-value=6.7e-05 Score=82.92 Aligned_cols=72 Identities=18% Similarity=0.126 Sum_probs=66.1
Q ss_pred ccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhhHHH
Q 041302 378 EVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWIET 452 (484)
Q Consensus 378 ~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~WL~~ 452 (484)
.+|.|.+|||||.++.- .|..+..+++++||+|+.++++++..||++...+.|+.+|.+.||+|.+.+++.+
T Consensus 593 ~~l~gkt~V~TGtL~~~---sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~ 664 (667)
T COG0272 593 SPLAGKTFVLTGTLEGM---SRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLA 664 (667)
T ss_pred cccCCCEEEEeccCCCC---CHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHH
Confidence 56999999999998743 5789999999999999999999999999999888899999999999999998865
No 28
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.68 E-value=7e-05 Score=84.03 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=61.6
Q ss_pred ccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhh
Q 041302 378 EVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRW 449 (484)
Q Consensus 378 ~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~W 449 (484)
..|.|.+|||||.++.. .+..+..+++.+||++.++++.+|+.||+....+.|..+|.+.||+|++.+.
T Consensus 583 ~~l~gk~~v~TG~l~~~---~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQM---SRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQELGIPIINEEE 651 (652)
T ss_pred CCccCcEEEEeccCCCC---CHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHcCCcEechhh
Confidence 35899999999988653 5789999999999999999999999999998666799999999999998654
No 29
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=97.68 E-value=9.2e-05 Score=75.10 Aligned_cols=77 Identities=23% Similarity=0.367 Sum_probs=63.5
Q ss_pred hhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEec-ccHHHHHHHhhhC-CeE
Q 041302 157 HLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLR-PFVHTFLKEASEM-FEM 234 (484)
Q Consensus 157 ~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklR-Pgl~eFL~~ls~~-yEl 234 (484)
.+.-..+..+|+|||+|||.... -+.+| ||+.++|++|.+. +-+
T Consensus 120 ~~~~~~~kvIvFDLDgTLi~~~~----------------------------------~v~irdPgV~EaL~~LkekGikL 165 (301)
T TIGR01684 120 SKVFEPPHVVVFDLDSTLITDEE----------------------------------PVRIRDPRIYDSLTELKKRGCIL 165 (301)
T ss_pred ccccccceEEEEecCCCCcCCCC----------------------------------ccccCCHHHHHHHHHHHHCCCEE
Confidence 35556678999999999997743 16688 9999999999886 899
Q ss_pred EEecCCcHhHHHHHHhhhCCCCcccceeEEeecCC
Q 041302 235 YIYTMGDRPYALEMAKLLDPSREYFNARVISRDDG 269 (484)
Q Consensus 235 ~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c 269 (484)
.|+|+|.+.+|..+++.++-.+ +| +.|++.++.
T Consensus 166 aIaTS~~Re~v~~~L~~lGLd~-YF-dvIIs~Gdv 198 (301)
T TIGR01684 166 VLWSYGDRDHVVESMRKVKLDR-YF-DIIISGGHK 198 (301)
T ss_pred EEEECCCHHHHHHHHHHcCCCc-cc-CEEEECCcc
Confidence 9999999999999999998876 77 456665543
No 30
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.68 E-value=0.00011 Score=74.53 Aligned_cols=78 Identities=24% Similarity=0.390 Sum_probs=64.4
Q ss_pred hhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEec-ccHHHHHHHhhhC-CeE
Q 041302 157 HLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLR-PFVHTFLKEASEM-FEM 234 (484)
Q Consensus 157 ~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklR-Pgl~eFL~~ls~~-yEl 234 (484)
.+.-.-+..+|+|||+|||.... -+.+| |++.++|++|.+. +.+
T Consensus 122 ~~~~~~~~~i~~D~D~TL~~~~~----------------------------------~v~irdp~V~EtL~eLkekGikL 167 (303)
T PHA03398 122 SLVWEIPHVIVFDLDSTLITDEE----------------------------------PVRIRDPFVYDSLDELKERGCVL 167 (303)
T ss_pred eeEeeeccEEEEecCCCccCCCC----------------------------------ccccCChhHHHHHHHHHHCCCEE
Confidence 45556778999999999998743 16688 9999999999875 899
Q ss_pred EEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCC
Q 041302 235 YIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGT 270 (484)
Q Consensus 235 ~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~ 270 (484)
.|+|+|.+.++..+++.+.-.+ +|. -|++.++..
T Consensus 168 aIvTNg~Re~v~~~Le~lgL~~-yFD-vII~~g~i~ 201 (303)
T PHA03398 168 VLWSYGNREHVVHSLKETKLEG-YFD-IIICGGRKA 201 (303)
T ss_pred EEEcCCChHHHHHHHHHcCCCc-ccc-EEEECCCcc
Confidence 9999999999999999988865 774 577666654
No 31
>COG5275 BRCT domain type II [General function prediction only]
Probab=97.66 E-value=0.00011 Score=70.69 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=68.7
Q ss_pred HhhhhcccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcC-CCChHHHHHHhcCCeeeChhhH
Q 041302 372 LKMVRGEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTD-ARTEKSRWAAKEAKFLVDPRWI 450 (484)
Q Consensus 372 L~~lr~~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~-~~T~K~~~A~~~gi~IV~~~WL 450 (484)
.++..+..|+|.+|||+|+++. .++.....++..+||+|....+.++|.||+.+ +|..|++.+++.+|+.++.+=+
T Consensus 149 ~peg~~~cL~G~~fVfTG~l~T---lsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf 225 (276)
T COG5275 149 VPEGERECLKGKVFVFTGDLKT---LSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGF 225 (276)
T ss_pred CCCCCcccccccEEEEeccccc---ccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHHH
Confidence 6678899999999999999874 35678889999999999999999999999985 6889999999999999987766
Q ss_pred HH
Q 041302 451 ET 452 (484)
Q Consensus 451 ~~ 452 (484)
..
T Consensus 226 ~~ 227 (276)
T COG5275 226 DS 227 (276)
T ss_pred HH
Confidence 54
No 32
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.63 E-value=8.8e-05 Score=63.64 Aligned_cols=73 Identities=32% Similarity=0.351 Sum_probs=55.4
Q ss_pred EEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhC-CeEEEecCCcHh
Q 041302 165 YLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEM-FEMYIYTMGDRP 243 (484)
Q Consensus 165 ~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~r~ 243 (484)
++|+|+|+||+....... ......++|++.+||+.+.+. +.++|.|++.+.
T Consensus 1 ~~vfD~D~tl~~~~~~~~----------------------------~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~ 52 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIA----------------------------EIEELELYPGVKEALKELKEKGIKLALATNKSRR 52 (139)
T ss_pred CeEEccCCceEccCcccc----------------------------ccccCCcCcCHHHHHHHHHHCCCeEEEEeCchHH
Confidence 489999999988765210 023478999999999999886 999999999999
Q ss_pred HHHHHHhhhCCCCcccceeEEeec
Q 041302 244 YALEMAKLLDPSREYFNARVISRD 267 (484)
Q Consensus 244 YA~~I~~~LDP~~~~F~~RI~sRd 267 (484)
++..+++.+.-.. +|. .+++.+
T Consensus 53 ~~~~~~~~~~~~~-~~~-~i~~~~ 74 (139)
T cd01427 53 EVLELLEELGLDD-YFD-PVITSN 74 (139)
T ss_pred HHHHHHHHcCCch-hhh-heeccc
Confidence 9999998875432 343 344433
No 33
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.48 E-value=0.0001 Score=84.76 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=71.7
Q ss_pred eeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCC-CChHHHHHHhcCCeeeChhhHHHHHHhcCCCC
Q 041302 383 CKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDA-RTEKSRWAAKEAKFLVDPRWIETANFLWQRQP 461 (484)
Q Consensus 383 ~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~-~T~K~~~A~~~gi~IV~~~WL~~c~~~w~r~d 461 (484)
..+.|++.... ..+.+.++.+|+.++.+.. ..||+|+.+. .|.|...|+..|++||+++||.+|+.....++
T Consensus 660 ~~~lfs~~~~~------~~~k~~~k~lg~s~~ss~~-e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~d 732 (896)
T KOG2043|consen 660 IEVLFSDKNDG------KNYKLAKKFLGGSVASSDS-EATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLD 732 (896)
T ss_pred eeeeeeeccCc------hhhhhHHhhccceeecccc-cceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhcccccc
Confidence 55778876422 3567778888988887754 8999999975 79999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcch
Q 041302 462 EENFPVQQTKPEEN 475 (484)
Q Consensus 462 E~~Y~l~~~~~~~~ 475 (484)
|.+|.+.+...+.+
T Consensus 733 ek~yil~D~ekEk~ 746 (896)
T KOG2043|consen 733 EKPYILHDEEKEKE 746 (896)
T ss_pred CccccccCHHHHhc
Confidence 99999987765443
No 34
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=97.38 E-value=0.00037 Score=77.75 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=72.3
Q ss_pred cccccceeee-eeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEE--cCCCChHHHHHHhcCCeeeChhhHHHH
Q 041302 377 GEVLKGCKLV-FSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVS--TDARTEKSRWAAKEAKFLVDPRWIETA 453 (484)
Q Consensus 377 ~~vL~G~~Iv-fSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa--~~~~T~K~~~A~~~gi~IV~~~WL~~c 453 (484)
..+|.|..+| ++|.. ..+....+.+++..+||.++.++.+.+||.|+ ....|.+..+|+++++-||+|.||.+|
T Consensus 631 s~if~gl~f~Vlsgt~---~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldc 707 (881)
T KOG0966|consen 631 SNIFDGLEFCVLSGTS---ETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDC 707 (881)
T ss_pred hhhhcCeeEEEecCCc---ccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHH
Confidence 5789999875 55542 23456899999999999999999999999996 455677778888889999999999999
Q ss_pred HHhcCCCCCCCCCC
Q 041302 454 NFLWQRQPEENFPV 467 (484)
Q Consensus 454 ~~~w~r~dE~~Y~l 467 (484)
....+.++-.++.+
T Consensus 708 c~~~~l~p~~P~~~ 721 (881)
T KOG0966|consen 708 CKKQRLLPWLPRDL 721 (881)
T ss_pred HhhhhccccccHHH
Confidence 99888787766654
No 35
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.37 E-value=0.00034 Score=66.12 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=64.5
Q ss_pred EEEEecccHHHHHHHhh-hCCeEEEecCC-cHhHHHHHHhhhCCC--C------cccceeEEeecCCCC-Cc----cccc
Q 041302 213 MMTKLRPFVHTFLKEAS-EMFEMYIYTMG-DRPYALEMAKLLDPS--R------EYFNARVISRDDGTQ-RH----QKGL 277 (484)
Q Consensus 213 ~~vklRPgl~eFL~~ls-~~yEl~IyT~g-~r~YA~~I~~~LDP~--~------~~F~~RI~sRd~c~~-~~----~KdL 277 (484)
.-+.++||+.++|+.|. +.+.+.|-|++ .+.++..+++.++-. | .+|.. +++-++... .. .+.+
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~-iv~~~~~~~~kp~~~i~~~~ 120 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDD-RIEIYKPNKAKQLEMILQKV 120 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhcee-eeeccCCchHHHHHHHHHHh
Confidence 45789999999999996 56999999988 999999999998854 2 57854 555444221 11 1112
Q ss_pred cccC---CCCCcEEEEcCChhhhhcCCCCeEEe
Q 041302 278 DVVL---GQESAVLILDDTENAWTKHRDNLILM 307 (484)
Q Consensus 278 ~~l~---~~~~~vVIIDD~~~vw~~~~~NlI~I 307 (484)
...+ -..+.+++|||++.-...-..+++.+
T Consensus 121 ~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~ 153 (174)
T TIGR01685 121 NKVDPSVLKPAQILFFDDRTDNVREVWGYGVTS 153 (174)
T ss_pred hhcccCCCCHHHeEEEcChhHhHHHHHHhCCEE
Confidence 1222 35689999999987664434455544
No 36
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.28 E-value=0.001 Score=66.97 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=62.5
Q ss_pred hhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEE-ecccHHHHHHHhhhCC-eE
Q 041302 157 HLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTK-LRPFVHTFLKEASEMF-EM 234 (484)
Q Consensus 157 ~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vk-lRPgl~eFL~~ls~~y-El 234 (484)
.+.-..+-++|+|||.|||..... +. .-|.+.+.|.++.+.+ -|
T Consensus 116 ~~~~~~phVIVfDlD~TLItd~~~----------------------------------v~Ir~~~v~~sL~~Lk~~g~vL 161 (297)
T PF05152_consen 116 SLVWEPPHVIVFDLDSTLITDEGD----------------------------------VRIRDPAVYDSLRELKEQGCVL 161 (297)
T ss_pred hccCCCCcEEEEECCCcccccCCc----------------------------------cccCChHHHHHHHHHHHcCCEE
Confidence 455667889999999999977641 11 2377889999998887 79
Q ss_pred EEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCC
Q 041302 235 YIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGT 270 (484)
Q Consensus 235 ~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~ 270 (484)
++|+.|+++|+..-++.+.-.+ +| +-|+++....
T Consensus 162 vLWSyG~~eHV~~sl~~~~L~~-~F-d~ii~~G~~~ 195 (297)
T PF05152_consen 162 VLWSYGNREHVRHSLKELKLEG-YF-DIIICGGNKA 195 (297)
T ss_pred EEecCCCHHHHHHHHHHhCCcc-cc-EEEEeCCccC
Confidence 9999999999999999999775 88 5688776543
No 37
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=97.23 E-value=0.00034 Score=78.90 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=69.9
Q ss_pred Hhhhhc-ccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeec-CCCccE-------------------------E
Q 041302 372 LKMVRG-EVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIEL-DPSVTH-------------------------V 424 (484)
Q Consensus 372 L~~lr~-~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i-~~~vTH-------------------------l 424 (484)
+..-++ .||.||+++|++.+-.+ .....-.+.+||.+.... ..--+| |
T Consensus 917 lEe~~gkniFd~cvF~lTsa~~sd-----~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalL 991 (1176)
T KOG3548|consen 917 LEEAIGKNIFDGCVFMLTSANRSD-----SASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALL 991 (1176)
T ss_pred chhhhCcchhcceeEEEeccccch-----hhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeE
Confidence 334444 79999999999976543 455666666888875432 111121 2
Q ss_pred EEc-CCCChHHHHHHhcCCeeeChhhHHHHHHhcCCCCCCCCCCCCCCC
Q 041302 425 VST-DARTEKSRWAAKEAKFLVDPRWIETANFLWQRQPEENFPVQQTKP 472 (484)
Q Consensus 425 Va~-~~~T~K~~~A~~~gi~IV~~~WL~~c~~~w~r~dE~~Y~l~~~~~ 472 (484)
|+- .-+|.||..|++.||+.||+.||.+|+.+.+.+|-.+|+|...-+
T Consensus 992 Isdth~Rt~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGyS 1040 (1176)
T KOG3548|consen 992 ISDTHYRTHKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLLPSGYS 1040 (1176)
T ss_pred eehhhhHHHHHHHHHHcCCCcccHHHHHHHHhccccccchhhcccCccc
Confidence 222 126889999999999999999999999999999999999975543
No 38
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.19 E-value=0.0021 Score=56.84 Aligned_cols=102 Identities=17% Similarity=0.076 Sum_probs=67.3
Q ss_pred EEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-CCeEEEecCCc--
Q 041302 165 YLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE-MFEMYIYTMGD-- 241 (484)
Q Consensus 165 ~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g~-- 241 (484)
.|++|+|+||++.... .. .+....+.||+.++|+.|.+ .|.++|.|++.
T Consensus 2 ~~~~D~dgtL~~~~~~--~~--------------------------~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~ 53 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPY--VD--------------------------DEDERILYPEVPDALAELKEAGYKVVIVTNQSGI 53 (132)
T ss_pred EEEEeCCCceecCCCC--CC--------------------------CHHHheeCCCHHHHHHHHHHCCCEEEEEECCccc
Confidence 6899999999964210 00 11235688999999999965 59999999999
Q ss_pred ------HhHHHHHHhhhCCCCcccceeEEeecCCCCC----cccccccc-CCCCCcEEEEcCC--hhhhh
Q 041302 242 ------RPYALEMAKLLDPSREYFNARVISRDDGTQR----HQKGLDVV-LGQESAVLILDDT--ENAWT 298 (484)
Q Consensus 242 ------r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~----~~KdL~~l-~~~~~~vVIIDD~--~~vw~ 298 (484)
..++..+++.+.-. ++ .+++.....++ +.+-++++ .-+.+.+|+|+|+ .++..
T Consensus 54 ~~~~~~~~~~~~~l~~~~l~--~~--~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~ 119 (132)
T TIGR01662 54 GRGKFSSGRVARRLEELGVP--ID--VLYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQA 119 (132)
T ss_pred cccHHHHHHHHHHHHHCCCC--EE--EEEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHH
Confidence 88888888887653 22 12222222221 23334444 2467889999994 45554
No 39
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.19 E-value=0.00051 Score=70.63 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=68.9
Q ss_pred CccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-CCeEEEecCC
Q 041302 162 RKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE-MFEMYIYTMG 240 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g 240 (484)
.+++||+|||+||..-+.-.+ . +. +. -+....||+.++|+.+.+ -+-+.|.|+.
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~-g----------------~~-------~i-~~~~~~~~~~e~L~~L~~~Gi~lai~S~n 56 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGED-G----------------ID-------NL-NLSPLHKTLQEKIKTLKKQGFLLALASKN 56 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccC-C----------------cc-------cc-ccCccHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 368999999999996654211 0 00 00 112357999999999965 5899999999
Q ss_pred cHhHHHHHHhh----hCCCCcccceeEEeecCCCCCccccccccCCCCCcEEEEcCChh
Q 041302 241 DRPYALEMAKL----LDPSREYFNARVISRDDGTQRHQKGLDVVLGQESAVLILDDTEN 295 (484)
Q Consensus 241 ~r~YA~~I~~~----LDP~~~~F~~RI~sRd~c~~~~~KdL~~l~~~~~~vVIIDD~~~ 295 (484)
.+..|..+++. +.... +|..-..+...-+....+-++.+.-+.+.+|+|||++.
T Consensus 57 ~~~~a~~~l~~~~~~~~~~~-~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~ 114 (320)
T TIGR01686 57 DEDDAKKVFERRKDFILQAE-DFDARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNPA 114 (320)
T ss_pred CHHHHHHHHHhCccccCcHH-HeeEEEEecCchHHHHHHHHHHhCCCcCcEEEECCCHH
Confidence 99999999987 54433 56432222111000122223334446788999999875
No 40
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.18 E-value=0.00023 Score=71.74 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=57.0
Q ss_pred EEecccHHHHHHHhh-hCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCCC---ccccccccCCCCCcEEEE
Q 041302 215 TKLRPFVHTFLKEAS-EMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQR---HQKGLDVVLGQESAVLIL 290 (484)
Q Consensus 215 vklRPgl~eFL~~ls-~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~---~~KdL~~l~~~~~~vVII 290 (484)
+.+.||+.++|+.|. +.+.+.|.|++.+.++..+++.++-.. +|. .+++.++.... +.+-+.++.-..+.+|+|
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F~-~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~I 218 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LFS-VVQAGTPILSKRRALSQLVAREGWQPAAVMYV 218 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-heE-EEEecCCCCCCHHHHHHHHHHhCcChhHEEEE
Confidence 567899999999996 458999999999999999999988754 785 46654442211 112222333356789999
Q ss_pred cCChh
Q 041302 291 DDTEN 295 (484)
Q Consensus 291 DD~~~ 295 (484)
+|++.
T Consensus 219 GDs~~ 223 (273)
T PRK13225 219 GDETR 223 (273)
T ss_pred CCCHH
Confidence 99864
No 41
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.14 E-value=0.00049 Score=69.44 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=84.2
Q ss_pred cCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhC-CeEEEecC
Q 041302 161 HRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEM-FEMYIYTM 239 (484)
Q Consensus 161 ~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~ 239 (484)
.++..+++|+|+||....... +.+|. ...-..+.|++.++|+.+.+. +.+.|.|+
T Consensus 156 ~~~~~~~~D~dgtl~~~~~~~---~~~~~---------------------~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~ 211 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGGRS---PYDWT---------------------KVKEDKPNPMVVELVKMYKAAGYEIIVVSG 211 (300)
T ss_pred CCCCEEEEECCCcCcCCCCCC---ccchh---------------------hcccCCCChhHHHHHHHHHhCCCEEEEEeC
Confidence 356799999999999765321 11110 012245799999999999765 99999999
Q ss_pred CcHhHHHHHHhhhCCCCcccceeEEeecC-------CCC------CccccccccCC-CCCcEEEEcCChhhhhcCCCCeE
Q 041302 240 GDRPYALEMAKLLDPSREYFNARVISRDD-------GTQ------RHQKGLDVVLG-QESAVLILDDTENAWTKHRDNLI 305 (484)
Q Consensus 240 g~r~YA~~I~~~LDP~~~~F~~RI~sRd~-------c~~------~~~KdL~~l~~-~~~~vVIIDD~~~vw~~~~~NlI 305 (484)
....++..+++.|+..+.+|. .+++.+. ... ...+.|..+.. +.+.+|+|||++..-.....++|
T Consensus 212 r~~~~~~~~l~~l~~~~~~f~-~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi 290 (300)
T PHA02530 212 RDGVCEEDTVEWLRQTDIWFD-DLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGL 290 (300)
T ss_pred CChhhHHHHHHHHHHcCCchh-hhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCC
Confidence 999999999999999887784 4666652 111 12233444444 56889999999876554444555
Q ss_pred Ee
Q 041302 306 LM 307 (484)
Q Consensus 306 ~I 307 (484)
++
T Consensus 291 ~~ 292 (300)
T PHA02530 291 EC 292 (300)
T ss_pred eE
Confidence 43
No 42
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=97.14 E-value=0.00034 Score=74.68 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=67.5
Q ss_pred cccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeee----------cCCCccEEEEcCCCC-hHHHHHHhcCCeee
Q 041302 377 GEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIE----------LDPSVTHVVSTDART-EKSRWAAKEAKFLV 445 (484)
Q Consensus 377 ~~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~----------i~~~vTHlVa~~~~T-~K~~~A~~~gi~IV 445 (484)
+.+|+|+++.++.-+|. ..|.-++.++||.|..+ .+..+||=|+-+++- .++ .|...|
T Consensus 325 kslF~glkFfl~reVPr------esL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v-----~gR~Yv 393 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVPR------ESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSV-----IGRTYV 393 (570)
T ss_pred HHHhhcceeeeeccCch------HHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCcccee-----eeeeee
Confidence 67899999999987775 47889999999999876 235689999988862 222 477899
Q ss_pred ChhhHHHHHHhcCCCCCCCCCCC
Q 041302 446 DPRWIETANFLWQRQPEENFPVQ 468 (484)
Q Consensus 446 ~~~WL~~c~~~w~r~dE~~Y~l~ 468 (484)
-|+|++||+.+..++|-+.|...
T Consensus 394 QPQWvfDsvNar~llpt~~Y~~G 416 (570)
T KOG2481|consen 394 QPQWVFDSVNARLLLPTEKYFPG 416 (570)
T ss_pred cchhhhhhccchhhccHhhhCCC
Confidence 99999999999999999999874
No 43
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.13 E-value=0.0014 Score=64.85 Aligned_cols=130 Identities=13% Similarity=0.109 Sum_probs=75.1
Q ss_pred hhhhcCccEEEEcCCCceeeeccCC-----CCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-
Q 041302 157 HLLRHRKLYLILDLDHTLLNSTLLL-----HLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE- 230 (484)
Q Consensus 157 ~ll~~rKL~LVLDLDeTLIhs~~~~-----~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~- 230 (484)
.|-.++++.++||||+||+.+...- ..++.+. ..+...+-...+. +...-.....|++.+||+.+.+
T Consensus 57 ~~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~------~~l~g~~~w~~~~-~~~~~~s~p~~~a~elL~~l~~~ 129 (237)
T TIGR01672 57 SLEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSE------DYLKNQVFWEKVN-NGWDEFSIPKEVARQLIDMHQRR 129 (237)
T ss_pred hcCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHh------hhhcChHHHHHHH-HhcccCCcchhHHHHHHHHHHHC
Confidence 4455567799999999999998621 0111100 0000000000000 0112234555669999999966
Q ss_pred CCeEEEecCC----cHhHHHHHHhhhCCCCcccceeEEeecCCCC-CccccccccCCCCCcEEEEcCChhhh
Q 041302 231 MFEMYIYTMG----DRPYALEMAKLLDPSREYFNARVISRDDGTQ-RHQKGLDVVLGQESAVLILDDTENAW 297 (484)
Q Consensus 231 ~yEl~IyT~g----~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~-~~~KdL~~l~~~~~~vVIIDD~~~vw 297 (484)
-+.|.|.|+. ...++..+++.+.-.. +| .-|++.++... ..-|. ........++.|-|+..=.
T Consensus 130 G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~-~f-~~i~~~d~~~~~Kp~~~--~~l~~~~i~i~vGDs~~DI 197 (237)
T TIGR01672 130 GDAIFFVTGRTPGKTDTVSKTLAKNFHIPA-MN-PVIFAGDKPGQYQYTKT--QWIQDKNIRIHYGDSDNDI 197 (237)
T ss_pred CCEEEEEeCCCCCcCHHHHHHHHHHhCCch-he-eEEECCCCCCCCCCCHH--HHHHhCCCeEEEeCCHHHH
Confidence 5999999998 6679999998877654 67 35666555422 11121 1223344578899986433
No 44
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.12 E-value=0.0011 Score=60.31 Aligned_cols=106 Identities=17% Similarity=0.064 Sum_probs=64.0
Q ss_pred cEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhh-hCCeEEEecCCcH
Q 041302 164 LYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEAS-EMFEMYIYTMGDR 242 (484)
Q Consensus 164 L~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls-~~yEl~IyT~g~r 242 (484)
.+|++|+|+||+...... ... .+.-+++.||+.++|+.|. .-|.+.|-|++.+
T Consensus 1 ~~~~~d~dgtl~~~~~~~-~~~-------------------------~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~ 54 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD-YPR-------------------------SLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSG 54 (147)
T ss_pred CeEEEeCCCceeccCCcc-cCC-------------------------CHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCc
Confidence 368999999999887521 110 0112468999999999996 5699999999884
Q ss_pred ---------------hHHHHHHhhhCCCC-cccceeEEeecC--CCCC----ccccccccCCCCCcEEEEcCChh
Q 041302 243 ---------------PYALEMAKLLDPSR-EYFNARVISRDD--GTQR----HQKGLDVVLGQESAVLILDDTEN 295 (484)
Q Consensus 243 ---------------~YA~~I~~~LDP~~-~~F~~RI~sRd~--c~~~----~~KdL~~l~~~~~~vVIIDD~~~ 295 (484)
.++..+++.++-.- .+|...+.+.+. +.++ +.+-+.++.-+.+.+++|+|+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~ 129 (147)
T TIGR01656 55 IGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLR 129 (147)
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHH
Confidence 56667777665431 011111110121 1111 22223334446778999999743
No 45
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.10 E-value=0.002 Score=60.25 Aligned_cols=104 Identities=15% Similarity=0.098 Sum_probs=63.1
Q ss_pred ccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhh-hCCeEEEecCCc
Q 041302 163 KLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEAS-EMFEMYIYTMGD 241 (484)
Q Consensus 163 KL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls-~~yEl~IyT~g~ 241 (484)
+..+++|+|+||+.+..... .+ .+ ..-+..+-||+.+.|+.|. +.|.+.|.|++.
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~-~~------------~~-----------~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~ 68 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKV-FP------------TS-----------ASDWRFLYPEIPAKLQELDDEGYKIVIFTNQS 68 (166)
T ss_pred CcEEEEeCCCceEecCCCCc-cc------------CC-----------hHHeEEecCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 45788999999997643100 00 00 0112335699999999995 679999999988
Q ss_pred Hh------------HHHHHHhhhCCCCcccceeEEeecCC--CCCc----cccccccC--CCCCcEEEEcCCh
Q 041302 242 RP------------YALEMAKLLDPSREYFNARVISRDDG--TQRH----QKGLDVVL--GQESAVLILDDTE 294 (484)
Q Consensus 242 r~------------YA~~I~~~LDP~~~~F~~RI~sRd~c--~~~~----~KdL~~l~--~~~~~vVIIDD~~ 294 (484)
.. ++..+++.++-. + .-+++-+.. .++. ..-+.++. .+.+.+++|.|++
T Consensus 69 ~~~~~~~~~~~~~~~i~~~l~~~gl~---~-~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 69 GIGRGKLSAESFKNKIEAFLEKLKVP---I-QVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred ccccCcccHHHHHHHHHHHHHHcCCC---E-EEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCC
Confidence 74 455666666542 2 223433322 1111 12233343 4567899999986
No 46
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.09 E-value=0.0019 Score=60.05 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=67.8
Q ss_pred cEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-CCeEEEecCC--
Q 041302 164 LYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE-MFEMYIYTMG-- 240 (484)
Q Consensus 164 L~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g-- 240 (484)
..|+||.|+||++..... .. .+. .-.+++-||+.++|++|.+ .|.++|.||.
T Consensus 2 ~~~~~d~dg~l~~~~~~~-~~-------------~~~-----------~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g 56 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSD-FQ-------------VDA-----------LEKLRFEKGVIPALLKLKKAGYKFVMVTNQDG 56 (161)
T ss_pred CEEEEeCCCCccccCCCc-cc-------------cCC-----------HHHeeECCCHHHHHHHHHHCCCeEEEEeCCcc
Confidence 579999999999854310 00 011 1247889999999999976 5999999996
Q ss_pred -------------cHhHHHHHHhhhCCCCcccceeEEe----ecCCCC--Cc----cccccccCCCCCcEEEEcCChh
Q 041302 241 -------------DRPYALEMAKLLDPSREYFNARVIS----RDDGTQ--RH----QKGLDVVLGQESAVLILDDTEN 295 (484)
Q Consensus 241 -------------~r~YA~~I~~~LDP~~~~F~~RI~s----Rd~c~~--~~----~KdL~~l~~~~~~vVIIDD~~~ 295 (484)
...|+..+++.++-. |...+++ .+++.. +. ..-+++...+.+.+++|+|+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~ 131 (161)
T TIGR01261 57 LGTPSFPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRET 131 (161)
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHH
Confidence 356777777777664 6544555 344322 11 1112233346778999999853
No 47
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.02 E-value=0.003 Score=59.03 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=24.7
Q ss_pred EEecccHHHHHHHhhhC-CeEEEecCCcH
Q 041302 215 TKLRPFVHTFLKEASEM-FEMYIYTMGDR 242 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~-yEl~IyT~g~r 242 (484)
+++-||+.++|++|.+. |.|.|.|++..
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 55779999999999754 99999999985
No 48
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=96.95 E-value=0.001 Score=73.92 Aligned_cols=81 Identities=27% Similarity=0.298 Sum_probs=68.6
Q ss_pred cceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcC------CCChHHHHHHhcCCeeeChhhHHHHH
Q 041302 381 KGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTD------ARTEKSRWAAKEAKFLVDPRWIETAN 454 (484)
Q Consensus 381 ~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~------~~T~K~~~A~~~gi~IV~~~WL~~c~ 454 (484)
+-.+.+.+|..|.. ...+.+.|.. ++....++.+||+|+.- .+|.|+..++..|.+|++..|+.+|+
T Consensus 477 kk~~~~~s~l~p~e----k~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~ 549 (684)
T KOG4362|consen 477 KKLVLLVSGLTPSE----KQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASL 549 (684)
T ss_pred cceeeeeccCCcch----HHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHH
Confidence 34556777877654 4677777777 77888889999999984 26899999999999999999999999
Q ss_pred HhcCCCCCCCCCCC
Q 041302 455 FLWQRQPEENFPVQ 468 (484)
Q Consensus 455 ~~w~r~dE~~Y~l~ 468 (484)
...+.++|++|.|.
T Consensus 550 k~~~~~~eepfEl~ 563 (684)
T KOG4362|consen 550 KLRKWVSEEPFELQ 563 (684)
T ss_pred HhcCCCCCCCeeEe
Confidence 99999999999985
No 49
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.88 E-value=0.0057 Score=61.64 Aligned_cols=117 Identities=18% Similarity=0.160 Sum_probs=70.9
Q ss_pred hcCccEEEEcCCCceeeeccCC--------CCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhh-h
Q 041302 160 RHRKLYLILDLDHTLLNSTLLL--------HLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEAS-E 230 (484)
Q Consensus 160 ~~rKL~LVLDLDeTLIhs~~~~--------~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls-~ 230 (484)
+.+++.+|||+|+|++...... ..++..|. .. . ..--...-||+.+||+.+. .
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~--~w---v-------------~~~~a~~ipGA~e~L~~L~~~ 133 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWD--KW---V-------------QAAQAKPVAGALDFLNYANSK 133 (266)
T ss_pred CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHH--HH---H-------------HcCCCCcCccHHHHHHHHHHC
Confidence 5678999999999999765210 00011010 00 0 0112456799999999995 4
Q ss_pred CCeEEEecCCcHhHHHHHHhhhCCCCc--ccceeEEeecCCCCCccccccc--cCCCCCcEEEEcCChhhh
Q 041302 231 MFEMYIYTMGDRPYALEMAKLLDPSRE--YFNARVISRDDGTQRHQKGLDV--VLGQESAVLILDDTENAW 297 (484)
Q Consensus 231 ~yEl~IyT~g~r~YA~~I~~~LDP~~~--~F~~RI~sRd~c~~~~~KdL~~--l~~~~~~vVIIDD~~~vw 297 (484)
-..|+|.|+..+.+.....+.|...|. .+...|+.|++.. -|...+ +...-..++.|.|+..=+
T Consensus 134 G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~~---~K~~rr~~I~~~y~Ivl~vGD~~~Df 201 (266)
T TIGR01533 134 GVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDKS---SKESRRQKVQKDYEIVLLFGDNLLDF 201 (266)
T ss_pred CCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCCC---CcHHHHHHHHhcCCEEEEECCCHHHh
Confidence 589999999987777766655544432 2334677776432 243222 223456688999985433
No 50
>PHA02597 30.2 hypothetical protein; Provisional
Probab=96.84 E-value=0.0012 Score=62.32 Aligned_cols=92 Identities=10% Similarity=0.112 Sum_probs=57.7
Q ss_pred EEEecccHHHHHHHhhhCCeEEEecCCcHhHHHHHHhhhCCCC---cccceeEEeecCCCCC---ccccccccCCCCCcE
Q 041302 214 MTKLRPFVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSR---EYFNARVISRDDGTQR---HQKGLDVVLGQESAV 287 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~~yEl~IyT~g~r~YA~~I~~~LDP~~---~~F~~RI~sRd~c~~~---~~KdL~~l~~~~~~v 287 (484)
.+++.||+.++|+.|.+.|.+++-|++.......+.+.+.-.+ .+|. .+++.++.... +.+-++++ + .+.+
T Consensus 72 ~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~-~i~~~~~~~~kp~~~~~a~~~~-~-~~~~ 148 (197)
T PHA02597 72 YLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFS-EVLMCGHDESKEKLFIKAKEKY-G-DRVV 148 (197)
T ss_pred hccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCccc-EEEEeccCcccHHHHHHHHHHh-C-CCcE
Confidence 3678999999999998888888888877665555555553321 2564 46655554321 11122223 3 5679
Q ss_pred EEEcCChhhhhcCCCC--eEEec
Q 041302 288 LILDDTENAWTKHRDN--LILME 308 (484)
Q Consensus 288 VIIDD~~~vw~~~~~N--lI~I~ 308 (484)
|+|||+..--..-..+ +|+..
T Consensus 149 v~vgDs~~di~aA~~a~~Gi~~i 171 (197)
T PHA02597 149 CFVDDLAHNLDAAHEALSQLPVI 171 (197)
T ss_pred EEeCCCHHHHHHHHHHHcCCcEE
Confidence 9999998765443344 55543
No 51
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.80 E-value=0.007 Score=56.71 Aligned_cols=102 Identities=6% Similarity=-0.142 Sum_probs=61.5
Q ss_pred ccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhC-CeEEEecCCc
Q 041302 163 KLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEM-FEMYIYTMGD 241 (484)
Q Consensus 163 KL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~ 241 (484)
.+.|++|+|+||+-... ... +. . -.+.+.||+.++|++|.+. |.+.|.|+++
T Consensus 3 ~~~~~~d~~~t~~~~~~--~~~--------------~~----------~-~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 3 MKAIFLDRDGVINVDSD--GYV--------------KS----------P-DEWIPIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred ccEEEEECCCCcccCCc--ccc--------------CC----------H-HHeEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 56899999999864431 000 00 0 1256789999999999875 9999999987
Q ss_pred H---------------hHHHHHHhhhCCCCcccceeEEeecC-----CC--C----CccccccccCCCCCcEEEEcCChh
Q 041302 242 R---------------PYALEMAKLLDPSREYFNARVISRDD-----GT--Q----RHQKGLDVVLGQESAVLILDDTEN 295 (484)
Q Consensus 242 r---------------~YA~~I~~~LDP~~~~F~~RI~sRd~-----c~--~----~~~KdL~~l~~~~~~vVIIDD~~~ 295 (484)
+ .+...+++.+ +.+|.. ++.... +. + .+.+-+..+.-..+.+++|+|++.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~f~~-i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~ 131 (181)
T PRK08942 56 GIARGLFTEAQLNALHEKMDWSLADR---GGRLDG-IYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLR 131 (181)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHHHc---CCccce-EEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHH
Confidence 4 2233334333 323543 443221 11 1 123344445456788999999863
No 52
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0011 Score=68.93 Aligned_cols=91 Identities=20% Similarity=0.257 Sum_probs=71.8
Q ss_pred hhHHHHhhhh---cccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEee-----------ecCCCccEEEEcCCC-C
Q 041302 367 DVRQVLKMVR---GEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSI-----------ELDPSVTHVVSTDAR-T 431 (484)
Q Consensus 367 DVr~IL~~lr---~~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~-----------~i~~~vTHlVa~~~~-T 431 (484)
|+......+- ..+|+|.++++|.-+|.+ .|.-++.++||.|.. ++++.|||-||-++- .
T Consensus 335 d~~~~vsk~~Ss~~slFS~f~FyisreVp~d------sLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~ 408 (591)
T COG5163 335 DIMEMVSKPCSSLKSLFSGFKFYISREVPGD------SLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMK 408 (591)
T ss_pred hhhhhccCcCcchhhhhhceEEEEeccccch------HHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhh
Confidence 5544444433 468999999999988875 678889999999853 456789999998773 2
Q ss_pred hHHHHHHhcCCeeeChhhHHHHHHhcCCCCCCCCCCC
Q 041302 432 EKSRWAAKEAKFLVDPRWIETANFLWQRQPEENFPVQ 468 (484)
Q Consensus 432 ~K~~~A~~~gi~IV~~~WL~~c~~~w~r~dE~~Y~l~ 468 (484)
.|+ .|...|.|+||++|+.++.+..-..|.+.
T Consensus 409 ~kv-----egrtYiQPQw~fDsiNkG~l~~~~~Y~~G 440 (591)
T COG5163 409 NKV-----EGRTYIQPQWLFDSINKGKLACVENYCVG 440 (591)
T ss_pred hhh-----cceeeechHHHHhhhccccchhhhhcccc
Confidence 232 58889999999999999999999999874
No 53
>COG4996 Predicted phosphatase [General function prediction only]
Probab=96.62 E-value=0.0038 Score=56.20 Aligned_cols=129 Identities=23% Similarity=0.311 Sum_probs=81.8
Q ss_pred EEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhh-hCCeEEEecCCcHh
Q 041302 165 YLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEAS-EMFEMYIYTMGDRP 243 (484)
Q Consensus 165 ~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls-~~yEl~IyT~g~r~ 243 (484)
.+|+|+|+||-.-...+.+.+. .......++.| +...-|.++|++.+||+++. .-|-+..+|=....
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pP--f~rVs~n~i~D----------s~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~ 69 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPP--FRRVSSNTIED----------SKGREVHLFPDVKETLKWARNSGYILGLASWNFED 69 (164)
T ss_pred cEEEeCCCcccccccchhcCCc--ceecCccceec----------CCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchH
Confidence 5799999999844332222111 00001111122 23456899999999999996 56889999999999
Q ss_pred HHHHHHhhhCCCCcccceeEEeecCCCCCccccccccC------C----CCCcEEEEcCCh----hhhhcCCCCeEEecc
Q 041302 244 YALEMAKLLDPSREYFNARVISRDDGTQRHQKGLDVVL------G----QESAVLILDDTE----NAWTKHRDNLILMER 309 (484)
Q Consensus 244 YA~~I~~~LDP~~~~F~~RI~sRd~c~~~~~KdL~~l~------~----~~~~vVIIDD~~----~vw~~~~~NlI~I~p 309 (484)
-|-++++.||-.. ||..-++ +-.+ ...+-|..+. + .++.+|.+|||. +.|. +.+|+=.++.
T Consensus 70 kA~~aLral~~~~-yFhy~Vi--ePhP-~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe-~~G~V~~~~~ 144 (164)
T COG4996 70 KAIKALRALDLLQ-YFHYIVI--EPHP-YKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWE-YLGNVKCLEM 144 (164)
T ss_pred HHHHHHHHhchhh-hEEEEEe--cCCC-hhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHH-hcCCeeeeEe
Confidence 9999999999987 8965554 2211 1122233322 1 367899999986 4665 3555544443
Q ss_pred c
Q 041302 310 Y 310 (484)
Q Consensus 310 y 310 (484)
+
T Consensus 145 ~ 145 (164)
T COG4996 145 W 145 (164)
T ss_pred e
Confidence 4
No 54
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=96.62 E-value=0.0037 Score=56.24 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=65.2
Q ss_pred EEEEecccHHHHHHHhh-hCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--C----ccccccccCCCCC
Q 041302 213 MMTKLRPFVHTFLKEAS-EMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--R----HQKGLDVVLGQES 285 (484)
Q Consensus 213 ~~vklRPgl~eFL~~ls-~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~----~~KdL~~l~~~~~ 285 (484)
...++.||+.+||+.+. +.|.++|.|++.+.++..+++.+... .+|. .+++.++... + +.+-++.+..+.+
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~-~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~ 151 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFD-EIISSDDVGSRKPDPDAYRRALEKLGIPPE 151 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCS-EEEEGGGSSSSTTSHHHHHHHHHHHTSSGG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-cccc-cccccchhhhhhhHHHHHHHHHHHcCCCcc
Confidence 56899999999999998 88999999999999999999988766 4785 5777776542 1 2333444545678
Q ss_pred cEEEEcCChhhh
Q 041302 286 AVLILDDTENAW 297 (484)
Q Consensus 286 ~vVIIDD~~~vw 297 (484)
.+|+|||++.--
T Consensus 152 ~~~~vgD~~~d~ 163 (176)
T PF13419_consen 152 EILFVGDSPSDV 163 (176)
T ss_dssp GEEEEESSHHHH
T ss_pred eEEEEeCCHHHH
Confidence 899999998543
No 55
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=96.42 E-value=0.0051 Score=60.96 Aligned_cols=134 Identities=12% Similarity=0.058 Sum_probs=72.6
Q ss_pred hhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHh-hhCCeEEE
Q 041302 158 LLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEA-SEMFEMYI 236 (484)
Q Consensus 158 ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~l-s~~yEl~I 236 (484)
+-.++++.+++|+|+|+++++...-... + ....+...+.+-.....+-.+....+.++-||+.+||+.+ .+-++|++
T Consensus 58 ~~~~~p~av~~DIDeTvldnsp~~~~~~-~-~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~i 135 (237)
T PRK11009 58 LEGRPPMAVGFDIDDTVLFSSPGFWRGK-K-TFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYF 135 (237)
T ss_pred ccCCCCcEEEEECcCccccCCchheeee-e-ccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEE
Confidence 3445577999999999998654210110 0 0000000000000000000011234577788899999999 67799999
Q ss_pred ecC----CcHhHHHHHHhhhCC-CCcccceeEEeecCCCCCccccccccCCCCCcEEEEcCChhhh
Q 041302 237 YTM----GDRPYALEMAKLLDP-SREYFNARVISRDDGTQRHQKGLDVVLGQESAVLILDDTENAW 297 (484)
Q Consensus 237 yT~----g~r~YA~~I~~~LDP-~~~~F~~RI~sRd~c~~~~~KdL~~l~~~~~~vVIIDD~~~vw 297 (484)
-|+ ....++..+++.+.- ...+|. -+++.+... ..-|. . .......+|+|.|+..=.
T Consensus 136 VTnR~~~k~~~t~~~Llk~~gip~~~~f~-vil~gd~~~-K~~K~-~-~l~~~~i~I~IGDs~~Di 197 (237)
T PRK11009 136 ITGRTATKTETVSKTLADDFHIPADNMNP-VIFAGDKPG-QYTKT-Q-WLKKKNIRIFYGDSDNDI 197 (237)
T ss_pred EeCCCCcccHHHHHHHHHHcCCCccccee-EEEcCCCCC-CCCHH-H-HHHhcCCeEEEcCCHHHH
Confidence 999 457788888885554 233673 466555421 11121 1 112344588999985433
No 56
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.40 E-value=0.011 Score=55.24 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=66.0
Q ss_pred hhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhC-CeEEE
Q 041302 158 LLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEM-FEMYI 236 (484)
Q Consensus 158 ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~-yEl~I 236 (484)
+....-..+|+|+|+||..... ..+-||+.++|+.|.+. +.++|
T Consensus 20 ~~~~~v~~vv~D~Dgtl~~~~~-----------------------------------~~~~pgv~e~L~~Lk~~g~~l~I 64 (170)
T TIGR01668 20 LKKVGIKGVVLDKDNTLVYPDH-----------------------------------NEAYPALRDWIEELKAAGRKLLI 64 (170)
T ss_pred HHHCCCCEEEEecCCccccCCC-----------------------------------CCcChhHHHHHHHHHHcCCEEEE
Confidence 4445567899999999885432 12458999999999766 99999
Q ss_pred ecCCc-HhHHHHHHhhhCCCCcccceeEEeecCCCCC----ccccccccCCCCCcEEEEcCCh--hhhhc
Q 041302 237 YTMGD-RPYALEMAKLLDPSREYFNARVISRDDGTQR----HQKGLDVVLGQESAVLILDDTE--NAWTK 299 (484)
Q Consensus 237 yT~g~-r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~----~~KdL~~l~~~~~~vVIIDD~~--~vw~~ 299 (484)
.|++. ...+..+++.++-.. ++ .+.++ +.+-++++....+.+++|+|+. |+-..
T Consensus 65 ~Sn~~~~~~~~~~~~~~gl~~-~~--------~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA 125 (170)
T TIGR01668 65 VSNNAGEQRAKAVEKALGIPV-LP--------HAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGG 125 (170)
T ss_pred EeCCchHHHHHHHHHHcCCEE-Ec--------CCCCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHH
Confidence 99999 688888777665321 11 11111 2233344444567899999985 66654
No 57
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.32 E-value=0.0055 Score=58.57 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=61.9
Q ss_pred EEEecccHHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------CccccccccCCCCCc
Q 041302 214 MTKLRPFVHTFLKEASEM-FEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVVLGQESA 286 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~~~~~ 286 (484)
++.+.||+.+||+.|.+. +.+.|.|++.+.++...++.++-.. +|. .+++.++... .+.+-++++.-+.+.
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f~-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 169 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FFD-AVITSEEEGVEKPHPKIFYAALKRLGVKPEE 169 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hcc-EEEEeccCCCCCCCHHHHHHHHHHcCCChhh
Confidence 578999999999999775 9999999999999999999887754 785 4776766542 133445555546688
Q ss_pred EEEEcCCh
Q 041302 287 VLILDDTE 294 (484)
Q Consensus 287 vVIIDD~~ 294 (484)
+|+|+|++
T Consensus 170 ~~~igDs~ 177 (221)
T TIGR02253 170 AVMVGDRL 177 (221)
T ss_pred EEEECCCh
Confidence 99999986
No 58
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=95.92 E-value=0.013 Score=55.76 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=63.9
Q ss_pred EEEecccHHHHHHHhhhCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------Ccccccccc-CCCCCc
Q 041302 214 MTKLRPFVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVV-LGQESA 286 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l-~~~~~~ 286 (484)
.++++||+.++|+.+.+.|.++|-|++.+.++..+++.+.-.+ +|. .+++.++... .+.+-++++ .-..+.
T Consensus 95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 172 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFD-DIFVSEDAGIQKPDKEIFNYALERMPKFSKEE 172 (224)
T ss_pred cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcC-EEEEcCccCCCCCCHHHHHHHHHHhcCCCchh
Confidence 3689999999999998889999999999999999998876554 784 5777666532 134445666 446778
Q ss_pred EEEEcCCh--hhhh
Q 041302 287 VLILDDTE--NAWT 298 (484)
Q Consensus 287 vVIIDD~~--~vw~ 298 (484)
+|+|+|++ ++=.
T Consensus 173 ~v~igD~~~~di~~ 186 (224)
T TIGR02254 173 VLMIGDSLTADIKG 186 (224)
T ss_pred eEEECCCcHHHHHH
Confidence 99999985 4443
No 59
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=95.75 E-value=0.016 Score=54.89 Aligned_cols=93 Identities=17% Similarity=0.131 Sum_probs=66.5
Q ss_pred EEEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--C----ccccccccCCCCCc
Q 041302 214 MTKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--R----HQKGLDVVLGQESA 286 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~----~~KdL~~l~~~~~~ 286 (484)
.+.+.||+.++|+.+.+ .|.+.|.|++.+.++..+++.++-.+ +|. .+++.++... + +.+-++++.-..+.
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 160 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFS-VLIGGDSLAQRKPHPDPLLLAAERLGVAPQQ 160 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCc-EEEecCCCCCCCCChHHHHHHHHHcCCChhH
Confidence 46899999999999965 49999999999999999999987655 674 5777665431 1 23334445446677
Q ss_pred EEEEcCChhhhhcCCCCeEEec
Q 041302 287 VLILDDTENAWTKHRDNLILME 308 (484)
Q Consensus 287 vVIIDD~~~vw~~~~~NlI~I~ 308 (484)
+++|+|++.-...-...++++.
T Consensus 161 ~~~igDs~~d~~aa~~aG~~~i 182 (213)
T TIGR01449 161 MVYVGDSRVDIQAARAAGCPSV 182 (213)
T ss_pred eEEeCCCHHHHHHHHHCCCeEE
Confidence 9999998765543233444443
No 60
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=95.75 E-value=0.016 Score=57.28 Aligned_cols=91 Identities=18% Similarity=0.092 Sum_probs=67.3
Q ss_pred EEEecccHHHHHHHhh-hCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------CccccccccCCCCCc
Q 041302 214 MTKLRPFVHTFLKEAS-EMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVVLGQESA 286 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls-~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~~~~~ 286 (484)
.+.+.||+.++|+.|. ..|.+.|-|++.+.++..+++.++-.. ||. .+++.+++.. .+.+-++++..+.+.
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd-~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 183 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FFQ-AVIIGSECEHAKPHPDPYLKALEVLKVSKDH 183 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hCc-EEEecCcCCCCCCChHHHHHHHHHhCCChhH
Confidence 4678899999999995 569999999999999999999988765 785 5777777542 234555656556788
Q ss_pred EEEEcCChhhhhcCCCCeEE
Q 041302 287 VLILDDTENAWTKHRDNLIL 306 (484)
Q Consensus 287 vVIIDD~~~vw~~~~~NlI~ 306 (484)
+++|+|++.-...-..+++.
T Consensus 184 ~l~vgDs~~Di~aA~~aGi~ 203 (248)
T PLN02770 184 TFVFEDSVSGIKAGVAAGMP 203 (248)
T ss_pred EEEEcCCHHHHHHHHHCCCE
Confidence 99999987433322234443
No 61
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=95.70 E-value=0.016 Score=58.04 Aligned_cols=82 Identities=11% Similarity=0.191 Sum_probs=64.2
Q ss_pred EEEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------CccccccccCCCCCc
Q 041302 214 MTKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVVLGQESA 286 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~~~~~ 286 (484)
.+.+.||+.++|+.|.+ .|-+.|-|++++.++..+++.++-.+ ||. .+++.+++.. .+.+-+.++.-..+.
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd-~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~ 184 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFS-VVLAAEDVYRGKPDPEMFMYAAERLGFIPER 184 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCc-EEEecccCCCCCCCHHHHHHHHHHhCCChHH
Confidence 36789999999999975 59999999999999999999887654 785 5777777642 234556666667788
Q ss_pred EEEEcCChhhh
Q 041302 287 VLILDDTENAW 297 (484)
Q Consensus 287 vVIIDD~~~vw 297 (484)
+|+|+|+..-.
T Consensus 185 ~l~IgDs~~Di 195 (260)
T PLN03243 185 CIVFGNSNSSV 195 (260)
T ss_pred eEEEcCCHHHH
Confidence 99999986544
No 62
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=95.67 E-value=0.044 Score=57.51 Aligned_cols=105 Identities=14% Similarity=0.092 Sum_probs=64.6
Q ss_pred CccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-CCeEEEecCC
Q 041302 162 RKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE-MFEMYIYTMG 240 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g 240 (484)
+|.+|+||-|+||+...... .. .+ ....+.+.||+.+||+.|.+ .|.++|.|++
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~-y~-------------~~-----------~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq 55 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTD-FQ-------------VD-----------SLDKLAFEPGVIPALLKLQKAGYKLVMVTNQ 55 (354)
T ss_pred CCcEEEEeCCCCccCCCCcc-cc-------------cc-----------CcccceECcCHHHHHHHHHhCCCeEEEEECC
Confidence 47899999999999876310 00 00 12348899999999999976 5999999994
Q ss_pred ---------------cHhHHHHHHhhhCCCCcccceeEEee----cCCCC--Cccccc----cccCCCCCcEEEEcCCh
Q 041302 241 ---------------DRPYALEMAKLLDPSREYFNARVISR----DDGTQ--RHQKGL----DVVLGQESAVLILDDTE 294 (484)
Q Consensus 241 ---------------~r~YA~~I~~~LDP~~~~F~~RI~sR----d~c~~--~~~KdL----~~l~~~~~~vVIIDD~~ 294 (484)
.+.++..+++.+ +.+|..-+++- ++|.. +...-+ ..+.-+.+.+++|.|+.
T Consensus 56 ~g~G~~~~~~~~l~~~~~~i~~iL~~~---gl~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~ 131 (354)
T PRK05446 56 DGLGTDSFPQEDFDPPHNLMMQIFESQ---GIKFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRE 131 (354)
T ss_pred ccccCccccHHHHhhHHHHHHHHHHHc---CCceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCH
Confidence 244444455544 33463333432 34322 111111 12223668899999985
No 63
>PRK08238 hypothetical protein; Validated
Probab=95.65 E-value=0.021 Score=62.24 Aligned_cols=89 Identities=19% Similarity=0.229 Sum_probs=61.4
Q ss_pred EEecccHHHHHHHhh-hCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCCC--cccc--ccccCCCCCcEEE
Q 041302 215 TKLRPFVHTFLKEAS-EMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQR--HQKG--LDVVLGQESAVLI 289 (484)
Q Consensus 215 vklRPgl~eFL~~ls-~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~--~~Kd--L~~l~~~~~~vVI 289 (484)
+.++|++.++|+++. +-+.+.|-|++.+.|++.+++.+.- |. .+++.++..+. ..|- +...++ .+.++.
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----Fd-~Vigsd~~~~~kg~~K~~~l~~~l~-~~~~~y 144 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----FD-GVFASDGTTNLKGAAKAAALVEAFG-ERGFDY 144 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----CC-EEEeCCCccccCCchHHHHHHHHhC-ccCeeE
Confidence 357899999999995 5699999999999999999998853 63 57766553321 1221 111222 344677
Q ss_pred EcCCh---hhhhcCCCCeEEeccc
Q 041302 290 LDDTE---NAWTKHRDNLILMERY 310 (484)
Q Consensus 290 IDD~~---~vw~~~~~NlI~I~py 310 (484)
+.|+. .+|. ..+|.+.|.|=
T Consensus 145 vGDS~~Dlp~~~-~A~~av~Vn~~ 167 (479)
T PRK08238 145 AGNSAADLPVWA-AARRAIVVGAS 167 (479)
T ss_pred ecCCHHHHHHHH-hCCCeEEECCC
Confidence 88876 4676 46788887653
No 64
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=95.63 E-value=0.018 Score=54.34 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=59.6
Q ss_pred EEecccHHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--C----ccccccccCCCCCcE
Q 041302 215 TKLRPFVHTFLKEASEM-FEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--R----HQKGLDVVLGQESAV 287 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~----~~KdL~~l~~~~~~v 287 (484)
+.+.||+.++|+.+.+. |.++|.|++...++..+++.+.-. .+|. .+++.++... + +.+-++++.-..+.+
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~fd-~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~ 168 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPFD-AVLSADAVRAYKPAPQVYQLALEALGVPPDEV 168 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhhh-eeEehhhcCCCCCCHHHHHHHHHHhCCChhhE
Confidence 56789999999999986 999999999999999999887643 3784 5777666532 1 223334444467889
Q ss_pred EEEcCChh
Q 041302 288 LILDDTEN 295 (484)
Q Consensus 288 VIIDD~~~ 295 (484)
++|+|++.
T Consensus 169 ~~vgD~~~ 176 (198)
T TIGR01428 169 LFVASNPW 176 (198)
T ss_pred EEEeCCHH
Confidence 99999874
No 65
>PRK09449 dUMP phosphatase; Provisional
Probab=95.59 E-value=0.02 Score=54.96 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=62.3
Q ss_pred EEecccHHHHHHHhhhCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--C----ccccccccCC-CCCcE
Q 041302 215 TKLRPFVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--R----HQKGLDVVLG-QESAV 287 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~----~~KdL~~l~~-~~~~v 287 (484)
+.+.||+.++|+.|.+.|.+.|.|++.+.++..+++.+.-.+ +|. .+++.++... + +.+-++++.. +.+.+
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd-~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~ 171 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFD-LLVISEQVGVAKPDVAIFDYALEQMGNPDRSRV 171 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcC-EEEEECccCCCCCCHHHHHHHHHHcCCCCcccE
Confidence 578999999999999889999999999999999998877654 784 5776766532 1 3344555543 44679
Q ss_pred EEEcCCh--hhhh
Q 041302 288 LILDDTE--NAWT 298 (484)
Q Consensus 288 VIIDD~~--~vw~ 298 (484)
++|+|+. ++=.
T Consensus 172 ~~vgD~~~~Di~~ 184 (224)
T PRK09449 172 LMVGDNLHSDILG 184 (224)
T ss_pred EEEcCCcHHHHHH
Confidence 9999985 5544
No 66
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=95.59 E-value=0.023 Score=52.15 Aligned_cols=78 Identities=19% Similarity=0.139 Sum_probs=55.2
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--C----ccccccccCCCCCcE
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--R----HQKGLDVVLGQESAV 287 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~----~~KdL~~l~~~~~~v 287 (484)
+.+.||+.+||+.+.+ .|.+.|.|++...+ ..+...++-.+ +|.. +++.++... + +.+-++++.-+.+.+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~-i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 160 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDV-VIFSGDVGRGKPDPDIYLLALKKLGLKPEEC 160 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCE-EEEcCCCCCCCCCHHHHHHHHHHcCCCcceE
Confidence 6889999999999976 59999999999999 66665566554 6754 555444331 1 222233344467889
Q ss_pred EEEcCChh
Q 041302 288 LILDDTEN 295 (484)
Q Consensus 288 VIIDD~~~ 295 (484)
|+|||++.
T Consensus 161 ~~vgD~~~ 168 (183)
T TIGR01509 161 LFVDDSPA 168 (183)
T ss_pred EEEcCCHH
Confidence 99999874
No 67
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=95.46 E-value=0.018 Score=53.69 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=57.9
Q ss_pred EEecccHHHHHHHhhhCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------C----ccccccccCCCC
Q 041302 215 TKLRPFVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------R----HQKGLDVVLGQE 284 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~----~~KdL~~l~~~~ 284 (484)
+++.||+.++|++|. +.++|.|++.+.++..+++.++-.. +|. .|++.++... + +.+-++++.-+.
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~fd-~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~ 158 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CFD-GIFCFDTANPDYLLPKPSPQAYEKALREAGVDP 158 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hhC-eEEEeecccCccCCCCCCHHHHHHHHHHhCCCc
Confidence 567899999999998 7899999999999999999886543 785 4776655331 1 223344444467
Q ss_pred CcEEEEcCChh
Q 041302 285 SAVLILDDTEN 295 (484)
Q Consensus 285 ~~vVIIDD~~~ 295 (484)
+.+++|+|++.
T Consensus 159 ~~~l~vgD~~~ 169 (184)
T TIGR01993 159 ERAIFFDDSAR 169 (184)
T ss_pred cceEEEeCCHH
Confidence 88999999874
No 68
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=95.44 E-value=0.031 Score=52.64 Aligned_cols=122 Identities=24% Similarity=0.337 Sum_probs=63.7
Q ss_pred ccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-CCeEEEec-CC
Q 041302 163 KLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE-MFEMYIYT-MG 240 (484)
Q Consensus 163 KL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT-~g 240 (484)
...+|+|||.||---......++. ++-..... --......-+++-|++...|++|.. -..|.|-+ ..
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~P----------f~~~~~~~-~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~ 71 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPP----------FKKISNGN-VVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTD 71 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-----------EEE-TTS---EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S
T ss_pred CcEEEEcCcCCCCchhHhhccCCC----------ceecCCCC-EEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCC
Confidence 467899999999865553322211 00000000 0011234568999999999999975 68888888 57
Q ss_pred cHhHHHHHHhhhCCC---------CcccceeEEeecCCCCCccccccccCC-CCCcEEEEcCChhh
Q 041302 241 DRPYALEMAKLLDPS---------REYFNARVISRDDGTQRHQKGLDVVLG-QESAVLILDDTENA 296 (484)
Q Consensus 241 ~r~YA~~I~~~LDP~---------~~~F~~RI~sRd~c~~~~~KdL~~l~~-~~~~vVIIDD~~~v 296 (484)
....|.++++.|+-. ..+|.+.=+... +...+.+.|.+-.+ +-+.++++||....
T Consensus 72 ~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N 136 (169)
T PF12689_consen 72 EPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG-SKTTHFRRIHRKTGIPYEEMLFFDDESRN 136 (169)
T ss_dssp -HHHHHHHHHHTT-C----------CCECEEEESSS--HHHHHHHHHHHH---GGGEEEEES-HHH
T ss_pred ChHHHHHHHHhcCCCccccccccchhhcchhheecC-chHHHHHHHHHhcCCChhHEEEecCchhc
Confidence 889999999998876 135654333232 22234455544333 56779999997643
No 69
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=95.41 E-value=0.03 Score=53.56 Aligned_cols=91 Identities=19% Similarity=0.155 Sum_probs=66.0
Q ss_pred EEEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--C----ccccccccCCCCCc
Q 041302 214 MTKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--R----HQKGLDVVLGQESA 286 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~----~~KdL~~l~~~~~~ 286 (484)
.+++.||+.++|+.|.+ .+.+.|.|++.+.++..+++.++-.. +|. .+++.+++.. + +.+-++++.-..+.
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f~-~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 157 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FFD-VVITLDDVEHAKPDPEPVLKALELLGAKPEE 157 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-cee-EEEecCcCCCCCCCcHHHHHHHHHcCCCHHH
Confidence 46789999999999975 69999999999999999999987654 785 5777766532 1 23334444445688
Q ss_pred EEEEcCChhhhhcCCCCeEE
Q 041302 287 VLILDDTENAWTKHRDNLIL 306 (484)
Q Consensus 287 vVIIDD~~~vw~~~~~NlI~ 306 (484)
+++|+|++.=...-..++++
T Consensus 158 ~~~iGDs~~Di~aa~~aG~~ 177 (214)
T PRK13288 158 ALMVGDNHHDILAGKNAGTK 177 (214)
T ss_pred EEEECCCHHHHHHHHHCCCe
Confidence 99999997544432333443
No 70
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=95.37 E-value=0.024 Score=53.83 Aligned_cols=92 Identities=17% Similarity=0.140 Sum_probs=65.8
Q ss_pred EEEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--C----ccccccccCCCCCc
Q 041302 214 MTKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--R----HQKGLDVVLGQESA 286 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~----~~KdL~~l~~~~~~ 286 (484)
.+.+.||+.++|+.+.+ .|.+.|.|++.+.++..+++.++-.+ +|. .+++.+++.. + +.+-++++.-+.+.
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 150 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFD-HVIGSDEVPRPKPAPDIVREALRLLDVPPED 150 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-hee-eEEecCcCCCCCCChHHHHHHHHHcCCChhh
Confidence 47789999999999965 69999999999999999999888765 775 5777766532 1 22223334446678
Q ss_pred EEEEcCChhhhhcCCCCeEEe
Q 041302 287 VLILDDTENAWTKHRDNLILM 307 (484)
Q Consensus 287 vVIIDD~~~vw~~~~~NlI~I 307 (484)
+++|+|++.-...-..+++++
T Consensus 151 ~l~igD~~~Di~aA~~~Gi~~ 171 (205)
T TIGR01454 151 AVMVGDAVTDLASARAAGTAT 171 (205)
T ss_pred eEEEcCCHHHHHHHHHcCCeE
Confidence 999999865443223445543
No 71
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=95.36 E-value=0.027 Score=55.42 Aligned_cols=82 Identities=15% Similarity=-0.064 Sum_probs=62.5
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------CccccccccCC-CCCc
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVVLG-QESA 286 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~-~~~~ 286 (484)
+++.||+.++|+.|.+ .+.+.|-|++++.++..+++.+.-.+ +|-+.|++.++... .+.+-++++.. +.+.
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~ 176 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAA 176 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchh
Confidence 6789999999999965 59999999999999999999887665 54356888776432 13444555554 3678
Q ss_pred EEEEcCChhhh
Q 041302 287 VLILDDTENAW 297 (484)
Q Consensus 287 vVIIDD~~~vw 297 (484)
+|+|.|++.=.
T Consensus 177 ~l~IGDs~~Di 187 (253)
T TIGR01422 177 CVKVGDTVPDI 187 (253)
T ss_pred eEEECCcHHHH
Confidence 99999986433
No 72
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.10 E-value=0.069 Score=58.84 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=67.8
Q ss_pred hcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-CCeEEEec
Q 041302 160 RHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE-MFEMYIYT 238 (484)
Q Consensus 160 ~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT 238 (484)
..+..++.||+|+|||.+........ + ..-|..+-||+.+.|+.|.+ -|.|+|+|
T Consensus 165 ~~~~Kia~fD~DGTLi~t~sg~~~~~-------------~-----------~~d~~~l~pgV~e~L~~L~~~Gy~IvIvT 220 (526)
T TIGR01663 165 KGQEKIAGFDLDGTIIKTKSGKVFPK-------------G-----------PDDWQIIFPEIPEKLKELEADGFKICIFT 220 (526)
T ss_pred CccCcEEEEECCCCccccCCCccCCC-------------C-----------HHHeeecccCHHHHHHHHHHCCCEEEEEE
Confidence 45678999999999997643110000 0 00122245999999999976 59999999
Q ss_pred CCcH------------hHHHHHHhhhCCCCcccceeEEeecCCCC--Cc----cccccccC----CCCCcEEEEcCCh
Q 041302 239 MGDR------------PYALEMAKLLDPSREYFNARVISRDDGTQ--RH----QKGLDVVL----GQESAVLILDDTE 294 (484)
Q Consensus 239 ~g~r------------~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~~----~KdL~~l~----~~~~~vVIIDD~~ 294 (484)
|... .++..|++.++- .|. -+++-++|.. +. ..-++.+. -+.+..++|.|+.
T Consensus 221 NQ~gI~~G~~~~~~~~~ki~~iL~~lgi---pfd-viia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 221 NQGGIARGKINADDFKAKIEAIVAKLGV---PFQ-VFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred CCcccccCcccHHHHHHHHHHHHHHcCC---ceE-EEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 9777 467778877764 364 4666555432 11 11112221 2678899999975
No 73
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=94.94 E-value=0.09 Score=49.36 Aligned_cols=121 Identities=19% Similarity=0.210 Sum_probs=85.3
Q ss_pred HHHhhhhhhhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHh
Q 041302 149 RLRNTDMKHLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEA 228 (484)
Q Consensus 149 ~~~~~~~~~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~l 228 (484)
.+..-+...|.+..-..+|+|||+|||-=.. ++ .-|-+++.+.++
T Consensus 14 tv~~i~~~~L~~~Gikgvi~DlDNTLv~wd~-~~----------------------------------~tpe~~~W~~e~ 58 (175)
T COG2179 14 TVFDITPDILKAHGIKGVILDLDNTLVPWDN-PD----------------------------------ATPELRAWLAEL 58 (175)
T ss_pred hHhhCCHHHHHHcCCcEEEEeccCceecccC-CC----------------------------------CCHHHHHHHHHH
Confidence 3445566788899999999999999995432 11 225566788888
Q ss_pred hhC-CeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCC--CCccccccccCCCCCcEEEEcCC--hhhhhcCCCC
Q 041302 229 SEM-FEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGT--QRHQKGLDVVLGQESAVLILDDT--ENAWTKHRDN 303 (484)
Q Consensus 229 s~~-yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~--~~~~KdL~~l~~~~~~vVIIDD~--~~vw~~~~~N 303 (484)
.+. --++|.+|+++.=+..++..||-.- |+ +---+ ...-|-|....-+.+.||+|.|+ .||...+.-+
T Consensus 59 k~~gi~v~vvSNn~e~RV~~~~~~l~v~f------i~-~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G 131 (175)
T COG2179 59 KEAGIKVVVVSNNKESRVARAAEKLGVPF------IY-RAKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAG 131 (175)
T ss_pred HhcCCEEEEEeCCCHHHHHhhhhhcCCce------ee-cccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccC
Confidence 665 7899999999999999999888753 22 22211 12345555555578899999996 5788766544
Q ss_pred --eEEecccc
Q 041302 304 --LILMERYH 311 (484)
Q Consensus 304 --lI~I~py~ 311 (484)
.|+|+|-.
T Consensus 132 ~~tIlV~Pl~ 141 (175)
T COG2179 132 MRTILVEPLV 141 (175)
T ss_pred cEEEEEEEec
Confidence 57888876
No 74
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=94.89 E-value=0.016 Score=55.58 Aligned_cols=91 Identities=10% Similarity=0.039 Sum_probs=64.6
Q ss_pred EEEecccHHHHHHHhhhCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------CccccccccCCCCCcE
Q 041302 214 MTKLRPFVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVVLGQESAV 287 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~~~~~v 287 (484)
.+.+.||+.++|+.+. +.+.|.|++++.++..+++.++-.. +|...+++.++... .+.+-+.++....+.+
T Consensus 86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 162 (221)
T PRK10563 86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENC 162 (221)
T ss_pred cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 4678899999999994 8999999999999999998776654 77545777655431 1233344454466789
Q ss_pred EEEcCChhhhhcCCCCeEEe
Q 041302 288 LILDDTENAWTKHRDNLILM 307 (484)
Q Consensus 288 VIIDD~~~vw~~~~~NlI~I 307 (484)
|+|+|++.-...-...++++
T Consensus 163 l~igDs~~di~aA~~aG~~~ 182 (221)
T PRK10563 163 ILVDDSSAGAQSGIAAGMEV 182 (221)
T ss_pred EEEeCcHhhHHHHHHCCCEE
Confidence 99999987654333344443
No 75
>PRK06769 hypothetical protein; Validated
Probab=94.85 E-value=0.064 Score=50.20 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=46.8
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHH-----HHHHhhhCCCCcccceeEEeecCC------CC----Ccccccc
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYA-----LEMAKLLDPSREYFNARVISRDDG------TQ----RHQKGLD 278 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA-----~~I~~~LDP~~~~F~~RI~sRd~c------~~----~~~KdL~ 278 (484)
+.+-||+.++|++|.+ -|.|.|.|++....+ ..+...+...| |.+.+++-..+ .+ .+.+-++
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~ 104 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFG--FDDIYLCPHKHGDGCECRKPSTGMLLQAAE 104 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCC--cCEEEECcCCCCCCCCCCCCCHHHHHHHHH
Confidence 4577999999999965 599999999875210 12223333333 22223332211 11 1334445
Q ss_pred ccCCCCCcEEEEcCChh
Q 041302 279 VVLGQESAVLILDDTEN 295 (484)
Q Consensus 279 ~l~~~~~~vVIIDD~~~ 295 (484)
++.-+.+.+++|+|++.
T Consensus 105 ~l~~~p~~~i~IGD~~~ 121 (173)
T PRK06769 105 KHGLDLTQCAVIGDRWT 121 (173)
T ss_pred HcCCCHHHeEEEcCCHH
Confidence 55456788999999863
No 76
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=94.81 E-value=0.056 Score=51.60 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=60.7
Q ss_pred EEEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--C----ccccccccCCCCCc
Q 041302 214 MTKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--R----HQKGLDVVLGQESA 286 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~----~~KdL~~l~~~~~~ 286 (484)
.++++||+.+||+.+.+ .+.+.|.|++.+.++..+++.++-.. +|. .+++.++... + +.+-+.++..+.+.
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 168 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YFS-VVIGGDSLPNKKPDPAPLLLACEKLGLDPEE 168 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-Ccc-EEEcCCCCCCCCcChHHHHHHHHHcCCChhh
Confidence 47799999999999975 59999999999999999999887654 674 5776655421 1 12233344446788
Q ss_pred EEEEcCChhhh
Q 041302 287 VLILDDTENAW 297 (484)
Q Consensus 287 vVIIDD~~~vw 297 (484)
+|+|+|++.-.
T Consensus 169 ~i~igD~~~Di 179 (226)
T PRK13222 169 MLFVGDSRNDI 179 (226)
T ss_pred eEEECCCHHHH
Confidence 99999986544
No 77
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=94.79 E-value=0.07 Score=51.89 Aligned_cols=82 Identities=13% Similarity=-0.026 Sum_probs=61.9
Q ss_pred EEEecccHHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--C----ccccccccCCCCCc
Q 041302 214 MTKLRPFVHTFLKEASEM-FEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--R----HQKGLDVVLGQESA 286 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~----~~KdL~~l~~~~~~ 286 (484)
.+.+.||+.++|+.|.+. +.+.|-|++.+.++..+++.++-.. +|. .+++.+++.. + +.+-++++.-+.+.
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~-~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~ 170 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCA-VLIGGDTLAERKPHPLPLLVAAERIGVAPTD 170 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-ccc-EEEecCcCCCCCCCHHHHHHHHHHhCCChhh
Confidence 478899999999999765 8999999999999999998887654 674 5666665432 1 33444555556788
Q ss_pred EEEEcCChhhh
Q 041302 287 VLILDDTENAW 297 (484)
Q Consensus 287 vVIIDD~~~vw 297 (484)
+++|+|++.-.
T Consensus 171 ~l~IGDs~~Di 181 (229)
T PRK13226 171 CVYVGDDERDI 181 (229)
T ss_pred EEEeCCCHHHH
Confidence 99999997544
No 78
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=94.54 E-value=0.048 Score=53.07 Aligned_cols=89 Identities=13% Similarity=-0.005 Sum_probs=63.8
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--C----ccccccccCCCCCcE
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--R----HQKGLDVVLGQESAV 287 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~----~~KdL~~l~~~~~~v 287 (484)
+.+.||+.++|+.+.+ .|.+.|-|++.+.++...++.+.-.. +|.. +++.++... + +.+-++++.-+.+.+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 169 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA-HLDL-LLSTHTFGYPKEDQRLWQAVAEHTGLKAERT 169 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH-HCCE-EEEeeeCCCCCCCHHHHHHHHHHcCCChHHE
Confidence 6789999999999976 59999999999999999988765443 7854 665555432 1 333345555567889
Q ss_pred EEEcCChhhhhcCCCCeE
Q 041302 288 LILDDTENAWTKHRDNLI 305 (484)
Q Consensus 288 VIIDD~~~vw~~~~~NlI 305 (484)
|+|+|++.-...-..+++
T Consensus 170 l~igDs~~di~aA~~aG~ 187 (224)
T PRK14988 170 LFIDDSEPILDAAAQFGI 187 (224)
T ss_pred EEEcCCHHHHHHHHHcCC
Confidence 999999765433233444
No 79
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=94.44 E-value=0.069 Score=56.57 Aligned_cols=82 Identities=9% Similarity=0.107 Sum_probs=64.1
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------CccccccccCCCCCcE
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVVLGQESAV 287 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~~~~~v 287 (484)
+.+.||+.+||+.|.+ .+.+.|-|++.+.++..+++.++-.. ||. .|++.+++.. .+.+-+.++.-..+.+
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yFd-~Iv~sddv~~~KP~Peifl~A~~~lgl~Peec 292 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FFS-VIVAAEDVYRGKPDPEMFIYAAQLLNFIPERC 292 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-Hce-EEEecCcCCCCCCCHHHHHHHHHHcCCCcccE
Confidence 5678999999999965 59999999999999999999887654 885 6888887642 1344455555577889
Q ss_pred EEEcCChhhhh
Q 041302 288 LILDDTENAWT 298 (484)
Q Consensus 288 VIIDD~~~vw~ 298 (484)
|+|+|+..-..
T Consensus 293 l~IGDS~~DIe 303 (381)
T PLN02575 293 IVFGNSNQTVE 303 (381)
T ss_pred EEEcCCHHHHH
Confidence 99999876443
No 80
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.37 E-value=0.072 Score=50.90 Aligned_cols=81 Identities=22% Similarity=0.263 Sum_probs=62.2
Q ss_pred EEEecccHHHHHHHhhhCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCC--CC----ccccccccCCCCCcE
Q 041302 214 MTKLRPFVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGT--QR----HQKGLDVVLGQESAV 287 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~--~~----~~KdL~~l~~~~~~v 287 (484)
.+..-|++.++|+.+.+.|.|+|.|||...++...++.+. =..+|.. |++.++.. ++ +..-++++......+
T Consensus 97 ~~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~Fd~-v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~ 174 (229)
T COG1011 97 LLPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG-LLDYFDA-VFISEDVGVAKPDPEIFEYALEKLGVPPEEA 174 (229)
T ss_pred hCccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC-Chhhhhe-EEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence 3788999999999998889999999999999999999877 4458854 66666654 11 233344455567889
Q ss_pred EEEcCChhh
Q 041302 288 LILDDTENA 296 (484)
Q Consensus 288 VIIDD~~~v 296 (484)
++|||+...
T Consensus 175 l~VgD~~~~ 183 (229)
T COG1011 175 LFVGDSLEN 183 (229)
T ss_pred EEECCChhh
Confidence 999998653
No 81
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=94.32 E-value=0.057 Score=51.97 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=62.6
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--C----ccccccccCCCCCcE
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--R----HQKGLDVVLGQESAV 287 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~----~~KdL~~l~~~~~~v 287 (484)
..+.||+.++|+.+.+ .|.++|.|++.+.++..+++.+.-.+ +|. .+++.++... + +..-++++.-..+.+
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 168 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFD-ALASAEKLPYSKPHPEVYLNCAAKLGVDPLTC 168 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-ccc-EEEEcccCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 5788999999999975 59999999999999999999887655 785 5777766432 1 223334444466889
Q ss_pred EEEcCChhhhhc
Q 041302 288 LILDDTENAWTK 299 (484)
Q Consensus 288 VIIDD~~~vw~~ 299 (484)
++|+|+..-...
T Consensus 169 ~~igDs~~Di~a 180 (222)
T PRK10826 169 VALEDSFNGMIA 180 (222)
T ss_pred EEEcCChhhHHH
Confidence 999999865543
No 82
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=94.20 E-value=0.079 Score=50.68 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=60.6
Q ss_pred EEecccHHHHHHHhh-hCCeEEEecCCcHhHHHHHHhhhCCC-CcccceeEEeecCCC--CC----ccccccccCCC-CC
Q 041302 215 TKLRPFVHTFLKEAS-EMFEMYIYTMGDRPYALEMAKLLDPS-REYFNARVISRDDGT--QR----HQKGLDVVLGQ-ES 285 (484)
Q Consensus 215 vklRPgl~eFL~~ls-~~yEl~IyT~g~r~YA~~I~~~LDP~-~~~F~~RI~sRd~c~--~~----~~KdL~~l~~~-~~ 285 (484)
+.+.||+.+||+.|. +.|.+.|-|++.+.++..+++.++-. +.+|. .+++.++-. ++ +.+-+.++... .+
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~-~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 164 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVD-AVVCPSDVAAGRPAPDLILRAMELTGVQDVQ 164 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCC-EEEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence 579999999999995 56999999999999999999988765 25885 577776632 11 23334444443 57
Q ss_pred cEEEEcCChh
Q 041302 286 AVLILDDTEN 295 (484)
Q Consensus 286 ~vVIIDD~~~ 295 (484)
.+|+|+|++.
T Consensus 165 ~~~~igD~~~ 174 (220)
T TIGR03351 165 SVAVAGDTPN 174 (220)
T ss_pred HeEEeCCCHH
Confidence 8999999864
No 83
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=94.04 E-value=0.049 Score=51.64 Aligned_cols=94 Identities=14% Similarity=0.060 Sum_probs=62.0
Q ss_pred EEEEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------CccccccccCCCCC
Q 041302 213 MMTKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVVLGQES 285 (484)
Q Consensus 213 ~~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~~~~ 285 (484)
++..++||+.++|+.+.+ .|.++|-|++.+..+..+......-..+|. .+++.+++.. .+..-++++.-+.+
T Consensus 81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd-~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~ 159 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAAD-HIYLSQDLGMRKPEARIYQHVLQAEGFSAA 159 (199)
T ss_pred HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcC-EEEEecccCCCCCCHHHHHHHHHHcCCChh
Confidence 356789999999999975 599999999998876654432111133674 5777666543 13444555555778
Q ss_pred cEEEEcCChhhhhcCCCCeEEe
Q 041302 286 AVLILDDTENAWTKHRDNLILM 307 (484)
Q Consensus 286 ~vVIIDD~~~vw~~~~~NlI~I 307 (484)
.+|+|||++.-...-...++..
T Consensus 160 ~~l~vgD~~~di~aA~~aG~~~ 181 (199)
T PRK09456 160 DAVFFDDNADNIEAANALGITS 181 (199)
T ss_pred HeEEeCCCHHHHHHHHHcCCEE
Confidence 8999999975443223344443
No 84
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=94.03 E-value=0.041 Score=51.15 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=60.0
Q ss_pred EEecccHHHHHHHhhhCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--C----ccccccccCCCCCcEE
Q 041302 215 TKLRPFVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--R----HQKGLDVVLGQESAVL 288 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~----~~KdL~~l~~~~~~vV 288 (484)
+.+-|++ ++|+.+.+.+.+.|-|++.+.++..+++.+.=.+ ||. .|++.++... + +..-++++..+.+.+|
T Consensus 87 ~~~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd-~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l 163 (188)
T PRK10725 87 VEPLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFD-AVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCV 163 (188)
T ss_pred CCCccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-Hce-EEEehhhccCCCCChHHHHHHHHHcCCCHHHeE
Confidence 4456774 8999998889999999999999999999887654 785 6888877542 1 2333444444567899
Q ss_pred EEcCChhhhh
Q 041302 289 ILDDTENAWT 298 (484)
Q Consensus 289 IIDD~~~vw~ 298 (484)
+|+|++.-..
T Consensus 164 ~igDs~~di~ 173 (188)
T PRK10725 164 VFEDADFGIQ 173 (188)
T ss_pred EEeccHhhHH
Confidence 9999865554
No 85
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=94.00 E-value=0.023 Score=63.04 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=78.0
Q ss_pred HHHHhhhhcccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChh
Q 041302 369 RQVLKMVRGEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPR 448 (484)
Q Consensus 369 r~IL~~lr~~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~ 448 (484)
+......|..+|.||.++|-|+ + +-+.+.+....+.-||.+.. =+..+||||.....+.-.-.+......+|.-+
T Consensus 200 ~~f~d~hrl~~feg~~~~f~gF-~---~ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e~~~~~~p~~~s~~~~~vk~e 274 (850)
T KOG3524|consen 200 PCFVDKHRLGVFEGLSLFFHGF-K---QEEIDDMLRSLENTGGKLAP-SDTLCTHVVVNEDNDEVEPLAVSSNQVHVKKE 274 (850)
T ss_pred cchhhhhccccccCCeEeecCC-c---HHHHHHHHHHHHhcCCcccC-CCCCceeEeecCCccccccccccccceeeccc
Confidence 3455678899999999999996 3 33567888889999999999 56799999998765544344555667899999
Q ss_pred hHHHHHHhcCCCCCCCCCCCCC
Q 041302 449 WIETANFLWQRQPEENFPVQQT 470 (484)
Q Consensus 449 WL~~c~~~w~r~dE~~Y~l~~~ 470 (484)
|.|-++....+..|..|.+...
T Consensus 275 wfw~siq~g~~a~e~~yl~~~~ 296 (850)
T KOG3524|consen 275 WFWVSIQRGCCAIEDNYLLPTG 296 (850)
T ss_pred ceEEEEecchhccccceecccc
Confidence 9999999999999999987654
No 86
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=93.91 E-value=0.13 Score=46.23 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=55.3
Q ss_pred EEEecccHHHHHHHhh-hCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC-C----ccccccccCCCCCcE
Q 041302 214 MTKLRPFVHTFLKEAS-EMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ-R----HQKGLDVVLGQESAV 287 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls-~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~-~----~~KdL~~l~~~~~~v 287 (484)
.....||+.++|+.+. +.+.+.|.|++.+.++..+++.+ -..+|. .+++.++... + +.+-++++..+. .+
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f~-~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~ 137 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH--LGDYFD-LILGSDEFGAKPEPEIFLAALESLGLPP-EV 137 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH--HHhcCc-EEEecCCCCCCcCHHHHHHHHHHcCCCC-CE
Confidence 3445699999999995 56999999999999999999984 233674 5777776531 1 222234444445 79
Q ss_pred EEEcCCh
Q 041302 288 LILDDTE 294 (484)
Q Consensus 288 VIIDD~~ 294 (484)
|+|+|++
T Consensus 138 l~iGDs~ 144 (154)
T TIGR01549 138 LHVGDNL 144 (154)
T ss_pred EEEeCCH
Confidence 9999985
No 87
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=93.79 E-value=0.16 Score=48.92 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=42.4
Q ss_pred EEEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEE
Q 041302 214 MTKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVI 264 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~ 264 (484)
.+.+|||+.+||+.+.+ .+.++|.|+|.+.|+..+++.+.+...+|++++.
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~ 119 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEAD 119 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeE
Confidence 47899999999999977 4999999999999999999988654445555444
No 88
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=93.65 E-value=0.2 Score=48.38 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=35.0
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhh
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLL 252 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~L 252 (484)
+.++||+.+||+.+.+ .+.+.|.|+|.+.|+..+++.+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 7899999999999965 5999999999999999999875
No 89
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=93.64 E-value=0.12 Score=50.81 Aligned_cols=94 Identities=14% Similarity=0.048 Sum_probs=60.7
Q ss_pred ccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-CCeEEEecCCc
Q 041302 163 KLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE-MFEMYIYTMGD 241 (484)
Q Consensus 163 KL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g~ 241 (484)
-..+++|+|+||.+... +-||+.++|++|.+ -+.++|.||++
T Consensus 8 ~~~~~~D~dG~l~~~~~-------------------------------------~~pga~e~L~~L~~~G~~~~ivTN~~ 50 (242)
T TIGR01459 8 YDVFLLDLWGVIIDGNH-------------------------------------TYPGAVQNLNKIIAQGKPVYFVSNSP 50 (242)
T ss_pred CCEEEEecccccccCCc-------------------------------------cCccHHHHHHHHHHCCCEEEEEeCCC
Confidence 45788899999976432 35899999999975 69999999999
Q ss_pred HhHHH--HHHhhhCCCCcccceeEEeecCCCCCcccc-ccccCCCCCcEEEEcCCh
Q 041302 242 RPYAL--EMAKLLDPSREYFNARVISRDDGTQRHQKG-LDVVLGQESAVLILDDTE 294 (484)
Q Consensus 242 r~YA~--~I~~~LDP~~~~F~~RI~sRd~c~~~~~Kd-L~~l~~~~~~vVIIDD~~ 294 (484)
+..+. ..++.+.-...+|. .|++.++....++.- ++.+......+++|-|.+
T Consensus 51 ~~~~~~~~~L~~~gl~~~~~~-~Ii~s~~~~~~~l~~~~~~~~~~~~~~~~vGd~~ 105 (242)
T TIGR01459 51 RNIFSLHKTLKSLGINADLPE-MIISSGEIAVQMILESKKRFDIRNGIIYLLGHLE 105 (242)
T ss_pred CChHHHHHHHHHCCCCccccc-eEEccHHHHHHHHHhhhhhccCCCceEEEeCCcc
Confidence 98876 66676665432463 477655432222221 122222345567777654
No 90
>PRK11587 putative phosphatase; Provisional
Probab=93.62 E-value=0.13 Score=49.56 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=58.1
Q ss_pred EEEecccHHHHHHHhh-hCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------CccccccccCCCCCc
Q 041302 214 MTKLRPFVHTFLKEAS-EMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVVLGQESA 286 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls-~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~~~~~ 286 (484)
.+.+.||+.+||+.|. +.+.+.|-|++++.++..+++...- . +|. -+++.++... .+.+-+.++.-..+.
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~-~~~-~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~ 157 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-P-APE-VFVTAERVKRGKPEPDAYLLGAQLLGLAPQE 157 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-C-Ccc-EEEEHHHhcCCCCCcHHHHHHHHHcCCCccc
Confidence 4678999999999996 5699999999999988877776554 2 353 4677665432 234445555556788
Q ss_pred EEEEcCChhh
Q 041302 287 VLILDDTENA 296 (484)
Q Consensus 287 vVIIDD~~~v 296 (484)
+|+|+|++.-
T Consensus 158 ~l~igDs~~d 167 (218)
T PRK11587 158 CVVVEDAPAG 167 (218)
T ss_pred EEEEecchhh
Confidence 9999998643
No 91
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=93.52 E-value=0.094 Score=48.72 Aligned_cols=53 Identities=23% Similarity=0.212 Sum_probs=34.6
Q ss_pred cEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-CCeEEEecCC
Q 041302 164 LYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE-MFEMYIYTMG 240 (484)
Q Consensus 164 L~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g 240 (484)
+++.+|||+|||.+........ + ..=|..+-|++.+-|+++.+ -|.|+|+||-
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~-------------~-----------~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPK-------------D-----------PDDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-S-------------S-----------TCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred CEEEEeCCCCccCCCCCCcCcC-------------C-----------HHHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 3688999999999875321110 0 01135567889999999965 7999999996
No 92
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=93.48 E-value=0.13 Score=51.57 Aligned_cols=81 Identities=21% Similarity=0.187 Sum_probs=59.6
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCCC------ccccccccCCCCCcE
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQR------HQKGLDVVLGQESAV 287 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~------~~KdL~~l~~~~~~v 287 (484)
+.++||+.++|+.+.+ .+.+.|.|++.+.++..+++.++-.+ +|. .+++.++.... +.+-+.++.-+.+.+
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f~-~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~ 177 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YFR-WIIGGDTLPQKKPDPAALLFVMKMAGVPPSQS 177 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hCe-EEEecCCCCCCCCCcHHHHHHHHHhCCChhHE
Confidence 5689999999999965 69999999999999999998876544 774 57777655321 112223333367889
Q ss_pred EEEcCChhhh
Q 041302 288 LILDDTENAW 297 (484)
Q Consensus 288 VIIDD~~~vw 297 (484)
|+|+|+..--
T Consensus 178 l~IGD~~~Di 187 (272)
T PRK13223 178 LFVGDSRSDV 187 (272)
T ss_pred EEECCCHHHH
Confidence 9999986544
No 93
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=93.40 E-value=0.16 Score=50.61 Aligned_cols=83 Identities=17% Similarity=0.017 Sum_probs=61.0
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------CccccccccCCC-CCc
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVVLGQ-ESA 286 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~~-~~~ 286 (484)
+.+-||+.++|+.|.+ .|.+.|-|++.+.++..+++.+.-.+ +|...|++.++... .+.+-++++... .+.
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e 178 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAA 178 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence 5788999999999965 59999999999999999998766544 44356777776532 134445555543 578
Q ss_pred EEEEcCChhhhh
Q 041302 287 VLILDDTENAWT 298 (484)
Q Consensus 287 vVIIDD~~~vw~ 298 (484)
+|+|+|++.=..
T Consensus 179 ~l~IGDs~~Di~ 190 (267)
T PRK13478 179 CVKVDDTVPGIE 190 (267)
T ss_pred eEEEcCcHHHHH
Confidence 999999875443
No 94
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=93.39 E-value=0.14 Score=48.24 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=54.3
Q ss_pred EEecccHHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--C----ccccccccCCCCCcE
Q 041302 215 TKLRPFVHTFLKEASEM-FEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--R----HQKGLDVVLGQESAV 287 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~----~~KdL~~l~~~~~~v 287 (484)
+++-||+.++|+.|.+. |.+.|.|++.+.+ ..+++.+.-.+ +|. .|++.++... + +.+-++.+..+.+.+
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~~-~fd-~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~ 180 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLLE-YFD-FVVTSYEVGAEKPDPKIFQEALERAGISPEEA 180 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcHH-hcc-eEEeecccCCCCCCHHHHHHHHHHcCCChhHE
Confidence 46889999999999864 9999999998764 66676654433 774 4665555432 1 233344444567889
Q ss_pred EEEcCCh
Q 041302 288 LILDDTE 294 (484)
Q Consensus 288 VIIDD~~ 294 (484)
|+|+|+.
T Consensus 181 ~~IgD~~ 187 (203)
T TIGR02252 181 LHIGDSL 187 (203)
T ss_pred EEECCCc
Confidence 9999985
No 95
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=93.34 E-value=0.15 Score=47.73 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=56.6
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC---C------ccc--cccc---
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ---R------HQK--GLDV--- 279 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~---~------~~K--dL~~--- 279 (484)
+.++||+.++|+.+.+ -+.++|.|++.+.++..+++.+.... +|.+.+.+.+.... . .-| -+..
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 6789999999999964 69999999999999999999987654 67766664432210 0 011 1222
Q ss_pred -cCCCCCcEEEEcCChh
Q 041302 280 -VLGQESAVLILDDTEN 295 (484)
Q Consensus 280 -l~~~~~~vVIIDD~~~ 295 (484)
+..+.+.+++|.|+..
T Consensus 158 ~~~~~~~~~i~iGDs~~ 174 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKN 174 (201)
T ss_pred HhCCCHHHEEEEcCCHh
Confidence 2234567999999863
No 96
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=93.26 E-value=0.2 Score=47.31 Aligned_cols=77 Identities=14% Similarity=-0.009 Sum_probs=57.1
Q ss_pred EecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC-C----ccccccccCCCCCcEEE
Q 041302 216 KLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ-R----HQKGLDVVLGQESAVLI 289 (484)
Q Consensus 216 klRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~-~----~~KdL~~l~~~~~~vVI 289 (484)
+..|+..++|+.|.+ -+.+.|.|++.+.++..+++.+.-.. +|. .+++.++... + +.+-++++..+.+.+|+
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f~-~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~ 183 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI-LFP-VQIWMEDCPPKPNPEPLILAAKALGVEACHAAM 183 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh-hCC-EEEeecCCCCCcCHHHHHHHHHHhCcCcccEEE
Confidence 455667999999976 49999999999999999999887654 784 5777666432 1 23334445556778999
Q ss_pred EcCCh
Q 041302 290 LDDTE 294 (484)
Q Consensus 290 IDD~~ 294 (484)
|+|++
T Consensus 184 vGD~~ 188 (197)
T TIGR01548 184 VGDTV 188 (197)
T ss_pred EeCCH
Confidence 99986
No 97
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=93.13 E-value=0.096 Score=50.98 Aligned_cols=50 Identities=12% Similarity=0.061 Sum_probs=43.9
Q ss_pred EEEecccHHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhhCCCCcccceeEE
Q 041302 214 MTKLRPFVHTFLKEASEM-FEMYIYTMGDRPYALEMAKLLDPSREYFNARVI 264 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~ 264 (484)
+++++||..+.++.+.+. +.+.|.|.|-..|+++|++.|.-+. .+++++.
T Consensus 75 ~~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~ 125 (212)
T COG0560 75 FLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELE 125 (212)
T ss_pred cCcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEE
Confidence 389999999999999766 9999999999999999999998875 5666555
No 98
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=93.11 E-value=0.19 Score=45.12 Aligned_cols=51 Identities=12% Similarity=-0.020 Sum_probs=38.1
Q ss_pred EEecccHHHHHHHh-hhCCeEEEecCCcHhHHH------------HHHhhhCCCCcccceeEEee
Q 041302 215 TKLRPFVHTFLKEA-SEMFEMYIYTMGDRPYAL------------EMAKLLDPSREYFNARVISR 266 (484)
Q Consensus 215 vklRPgl~eFL~~l-s~~yEl~IyT~g~r~YA~------------~I~~~LDP~~~~F~~RI~sR 266 (484)
....|.+.+.|+++ .+-+++++.|+-...+.. .+.+.|+-.+.-| +.|+-|
T Consensus 23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY-d~l~~~ 86 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY-DEIYVG 86 (126)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCC-ceEEeC
Confidence 34778888999998 668999999988777766 7778888777555 345534
No 99
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=93.11 E-value=0.16 Score=47.97 Aligned_cols=81 Identities=19% Similarity=0.103 Sum_probs=54.3
Q ss_pred EEEecccHHHHHHHhhhCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEee-------cCCCCCccc--cccccCCCC
Q 041302 214 MTKLRPFVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISR-------DDGTQRHQK--GLDVVLGQE 284 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sR-------d~c~~~~~K--dL~~l~~~~ 284 (484)
.+.++||+.+||+.+.+.+.+.|.|++.+.++..+++.++-.. +|.+++... .+...+..| -+..+....
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~ 144 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLG 144 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hhcceEEECCCCeEECccccccchHHHHHHHHHHhC
Confidence 4667899999999998779999999999999999999877543 665544322 111111112 122222233
Q ss_pred CcEEEEcCChh
Q 041302 285 SAVLILDDTEN 295 (484)
Q Consensus 285 ~~vVIIDD~~~ 295 (484)
..+|.|.|+..
T Consensus 145 ~~~v~iGDs~~ 155 (205)
T PRK13582 145 YRVIAAGDSYN 155 (205)
T ss_pred CeEEEEeCCHH
Confidence 57888999754
No 100
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=92.91 E-value=0.1 Score=48.17 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=56.0
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--C----ccccccccCCCCCcE
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--R----HQKGLDVVLGQESAV 287 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~----~~KdL~~l~~~~~~v 287 (484)
+.+.||+.++|+.|.+ .|.+.|-|++ .++..+++.++-.+ +|. .+++.++... + +.+-++++....+.+
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f~-~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 162 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YFD-AIVDADEVKEGKPHPETFLLAAELLGVSPNEC 162 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HCC-EeeehhhCCCCCCChHHHHHHHHHcCCCHHHe
Confidence 6799999999999976 4899999988 77888888766544 785 4666655431 1 233344444456789
Q ss_pred EEEcCChhhh
Q 041302 288 LILDDTENAW 297 (484)
Q Consensus 288 VIIDD~~~vw 297 (484)
|+|+|+..-.
T Consensus 163 v~IgD~~~di 172 (185)
T TIGR02009 163 VVFEDALAGV 172 (185)
T ss_pred EEEeCcHhhH
Confidence 9999986433
No 101
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=92.62 E-value=0.15 Score=51.68 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=60.3
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccce-eEEeecCCCC--C----ccccccccCCCCCc
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNA-RVISRDDGTQ--R----HQKGLDVVLGQESA 286 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~-RI~sRd~c~~--~----~~KdL~~l~~~~~~ 286 (484)
+++.||+.+||+.+.+ .|.|.|-|++++.++..+++.+.-.+ +|.. .+++.+++.. + +.+-++++.-+.+.
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPE-RAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcccc-ccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 5889999999999965 59999999999999999988662111 3321 2345555432 1 22334444446678
Q ss_pred EEEEcCChhhhhcCCCCeE
Q 041302 287 VLILDDTENAWTKHRDNLI 305 (484)
Q Consensus 287 vVIIDD~~~vw~~~~~NlI 305 (484)
+|+|+|++.-+..-..+++
T Consensus 222 ~l~IGDs~~Di~aA~~aG~ 240 (286)
T PLN02779 222 CVVVEDSVIGLQAAKAAGM 240 (286)
T ss_pred EEEEeCCHHhHHHHHHcCC
Confidence 9999999866643333343
No 102
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=92.61 E-value=0.2 Score=45.99 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=49.0
Q ss_pred EEEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCCCccccccccCCCCCcEEEEcC
Q 041302 214 MTKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQRHQKGLDVVLGQESAVLILDD 292 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~~~KdL~~l~~~~~~vVIIDD 292 (484)
++.++|+. -|++|.+ .+.+.|.|++.+..+..+++.+.-.. +|.. ...-.....+-++.+.-+.+.++.|.|
T Consensus 28 ~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~-~~~~----~~~k~~~~~~~~~~~~~~~~~~~~vGD 100 (154)
T TIGR01670 28 AFNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITH-LYQG----QSNKLIAFSDILEKLALAPENVAYIGD 100 (154)
T ss_pred EEechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCE-EEec----ccchHHHHHHHHHHcCCCHHHEEEECC
Confidence 35677776 6788865 68999999999999999998887653 4532 100000111222333335678999988
Q ss_pred Chhhh
Q 041302 293 TENAW 297 (484)
Q Consensus 293 ~~~vw 297 (484)
+..=.
T Consensus 101 s~~D~ 105 (154)
T TIGR01670 101 DLIDW 105 (154)
T ss_pred CHHHH
Confidence 76433
No 103
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=92.53 E-value=0.29 Score=49.70 Aligned_cols=94 Identities=13% Similarity=0.239 Sum_probs=61.8
Q ss_pred EEEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhh---hCCCCcccceeEEeecCCCC-----C----cccc--cc
Q 041302 214 MTKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKL---LDPSREYFNARVISRDDGTQ-----R----HQKG--LD 278 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~---LDP~~~~F~~RI~sRd~c~~-----~----~~Kd--L~ 278 (484)
-+.+|||+.+||+.|.+ ...+.|+|+|...++..+++. .+|...+++|++.-.++... + .-|. +-
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~ 198 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVA 198 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHH
Confidence 48899999999999965 599999999999999999995 34555676776664332211 1 1121 11
Q ss_pred -----ccC--CCCCcEEEEcCCh-hhhhc----CCCCeEEe
Q 041302 279 -----VVL--GQESAVLILDDTE-NAWTK----HRDNLILM 307 (484)
Q Consensus 279 -----~l~--~~~~~vVIIDD~~-~vw~~----~~~NlI~I 307 (484)
.+. -+.+.+|+|.|.. ++... +.+|.|.|
T Consensus 199 ~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~i 239 (277)
T TIGR01544 199 LRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKI 239 (277)
T ss_pred HHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEE
Confidence 111 2456799999975 34331 23466666
No 104
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=92.38 E-value=0.11 Score=49.38 Aligned_cols=82 Identities=22% Similarity=0.082 Sum_probs=52.3
Q ss_pred EEEecccHHHHHHHhhh-CCeEEEecCCcHhH--HHHHHhhhCCCCcccceeEEeecCCC--CC----ccccccccCCCC
Q 041302 214 MTKLRPFVHTFLKEASE-MFEMYIYTMGDRPY--ALEMAKLLDPSREYFNARVISRDDGT--QR----HQKGLDVVLGQE 284 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~Y--A~~I~~~LDP~~~~F~~RI~sRd~c~--~~----~~KdL~~l~~~~ 284 (484)
.+.+.||+.++|+.|.+ .|.++|.|++...+ +......++- ..+|. .+++.++.. ++ +.+-++++.-..
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l-~~~fd-~v~~s~~~~~~KP~p~~~~~~~~~~g~~~ 169 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDI-MALFD-AVVESCLEGLRKPDPRIYQLMLERLGVAP 169 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhh-HhhCC-EEEEeeecCCCCCCHHHHHHHHHHcCCCH
Confidence 46789999999999976 59999999998765 2222222221 23674 466555432 11 234445555466
Q ss_pred CcEEEEcCChhhh
Q 041302 285 SAVLILDDTENAW 297 (484)
Q Consensus 285 ~~vVIIDD~~~vw 297 (484)
+.+|+|||++.--
T Consensus 170 ~~~l~i~D~~~di 182 (211)
T TIGR02247 170 EECVFLDDLGSNL 182 (211)
T ss_pred HHeEEEcCCHHHH
Confidence 7788889986544
No 105
>PLN02940 riboflavin kinase
Probab=92.04 E-value=0.17 Score=53.51 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=59.2
Q ss_pred EEecccHHHHHHHhhhC-CeEEEecCCcHhHHHHHHh-hhCCCCcccceeEEeecCCCC------CccccccccCCCCCc
Q 041302 215 TKLRPFVHTFLKEASEM-FEMYIYTMGDRPYALEMAK-LLDPSREYFNARVISRDDGTQ------RHQKGLDVVLGQESA 286 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~-~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~~~~~ 286 (484)
+.+.||+.++|+.|.+. +.+.|-|++.+.++..+++ ..+=. .+|. .|++.+++.. .+.+-++++.-..+.
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd-~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~ 169 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFS-VIVGGDEVEKGKPSPDIFLEAAKRLNVEPSN 169 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCC-EEEehhhcCCCCCCHHHHHHHHHHcCCChhH
Confidence 56789999999999654 8999999999999998876 44433 3785 5777777542 123334444445678
Q ss_pred EEEEcCChhhh
Q 041302 287 VLILDDTENAW 297 (484)
Q Consensus 287 vVIIDD~~~vw 297 (484)
+|+|+|+..--
T Consensus 170 ~l~VGDs~~Di 180 (382)
T PLN02940 170 CLVIEDSLPGV 180 (382)
T ss_pred EEEEeCCHHHH
Confidence 99999987543
No 106
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=92.01 E-value=0.21 Score=47.65 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=41.6
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEE
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVI 264 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~ 264 (484)
++++||+.+||+.+.+ .+.++|.|+|.+.++..+++.+.-.. +|++.+.
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~~ 133 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRLE 133 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEEE
Confidence 5689999999999986 59999999999999999999876554 6765443
No 107
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=91.63 E-value=0.38 Score=44.34 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=41.0
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEee
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISR 266 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sR 266 (484)
+.++||+.++|+.+.+ .+.++|.|++.+.++..+++.++-.. +|. .+++.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~i~~~ 121 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VFI-EIYSN 121 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-hee-EEecc
Confidence 6899999999999966 49999999999999999998876443 563 35543
No 108
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=91.60 E-value=0.36 Score=47.29 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=57.1
Q ss_pred EEEecccHHHHHHHhh-hCCeEEEecCCcHhHHHHHHhhhCC--CCcccceeEEeecCCCC----CccccccccCCCCCc
Q 041302 214 MTKLRPFVHTFLKEAS-EMFEMYIYTMGDRPYALEMAKLLDP--SREYFNARVISRDDGTQ----RHQKGLDVVLGQESA 286 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls-~~yEl~IyT~g~r~YA~~I~~~LDP--~~~~F~~RI~sRd~c~~----~~~KdL~~l~~~~~~ 286 (484)
...+.||+.++|+.+. +.|.++|+|+++..+...+++..+- -..+|.. +|.-..+.+ .+.+-++++.-+.+.
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~-~fd~~~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSG-YFDTTVGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcce-EEEeCcccCCCHHHHHHHHHHhCcChhH
Confidence 3568999999999995 4699999999999999988877531 1124543 332222222 234445555556788
Q ss_pred EEEEcCChhhh
Q 041302 287 VLILDDTENAW 297 (484)
Q Consensus 287 vVIIDD~~~vw 297 (484)
+++|+|+..-.
T Consensus 172 ~lfVgDs~~Di 182 (220)
T TIGR01691 172 ILFLSDIINEL 182 (220)
T ss_pred EEEEeCCHHHH
Confidence 99999997544
No 109
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=91.39 E-value=0.41 Score=40.98 Aligned_cols=34 Identities=24% Similarity=0.066 Sum_probs=24.6
Q ss_pred ccHHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhh
Q 041302 219 PFVHTFLKEASEM-FEMYIYTMGDRPYALEMAKLL 252 (484)
Q Consensus 219 Pgl~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~L 252 (484)
||+.+||+.|.+. ..+++.||++..=...+++.|
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 8899999999775 999999999944444444433
No 110
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=90.87 E-value=0.28 Score=45.21 Aligned_cols=78 Identities=10% Similarity=0.171 Sum_probs=53.1
Q ss_pred EEecccHHHHHHHhh-hCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------CccccccccCCCCCcE
Q 041302 215 TKLRPFVHTFLKEAS-EMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVVLGQESAV 287 (484)
Q Consensus 215 vklRPgl~eFL~~ls-~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~~~~~v 287 (484)
+++.||+.++|+.|. ..+.+.|-|++. .+..+++.+.-.. +|. .+++.++-.. .+.+-++++.-+.+.+
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~-~f~-~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 161 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID-YFD-AIVDPAEIKKGKPDPEIFLAAAEGLGVSPSEC 161 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh-hCc-EEEehhhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 468899999999996 458999999875 3567777776543 675 4665554321 1334444444466789
Q ss_pred EEEcCChhh
Q 041302 288 LILDDTENA 296 (484)
Q Consensus 288 VIIDD~~~v 296 (484)
|+|+|++.-
T Consensus 162 v~vgD~~~d 170 (185)
T TIGR01990 162 IGIEDAQAG 170 (185)
T ss_pred EEEecCHHH
Confidence 999998643
No 111
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=90.76 E-value=0.082 Score=48.63 Aligned_cols=72 Identities=18% Similarity=0.076 Sum_probs=54.9
Q ss_pred EEecccHHHHHHHhhhCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------CccccccccCCCCCcEE
Q 041302 215 TKLRPFVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVVLGQESAVL 288 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~~~~~vV 288 (484)
+.+.||+.++|+. |.|.||+.+.+...+++.+.-. .+|. .+++.++... .+.+-++++..+.+.+|
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~-~~fd-~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l 160 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLP-WYFD-RAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVL 160 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCH-HHHh-hhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeE
Confidence 6689999999994 7899999999999999987654 3785 4777766432 13445556656778899
Q ss_pred EEcCCh
Q 041302 289 ILDDTE 294 (484)
Q Consensus 289 IIDD~~ 294 (484)
+|+|++
T Consensus 161 ~vgD~~ 166 (175)
T TIGR01493 161 MVAAHQ 166 (175)
T ss_pred eEecCh
Confidence 999984
No 112
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=89.72 E-value=0.52 Score=50.90 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=58.6
Q ss_pred EEEecccHHHHHHHhh-hCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC-----CccccccccCCCCCcE
Q 041302 214 MTKLRPFVHTFLKEAS-EMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ-----RHQKGLDVVLGQESAV 287 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls-~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~-----~~~KdL~~l~~~~~~v 287 (484)
.+++.||+.++|+.+. +.+.+.|.|++.+.++..+++.++-.. ||. .+++.++... .+.+-++++ +.+.+
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~-~i~~~d~v~~~~kP~~~~~al~~l--~~~~~ 403 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVT-ETFSIEQINSLNKSDLVKSILNKY--DIKEA 403 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcc-eeEecCCCCCCCCcHHHHHHHHhc--CcceE
Confidence 3678999999999996 569999999999999999999887654 785 4777665421 122223333 34679
Q ss_pred EEEcCChhhh
Q 041302 288 LILDDTENAW 297 (484)
Q Consensus 288 VIIDD~~~vw 297 (484)
|+|.|++.=.
T Consensus 404 v~VGDs~~Di 413 (459)
T PRK06698 404 AVVGDRLSDI 413 (459)
T ss_pred EEEeCCHHHH
Confidence 9999987433
No 113
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=89.33 E-value=0.29 Score=47.67 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=66.2
Q ss_pred EEEecccHHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------CccccccccCCCCCc
Q 041302 214 MTKLRPFVHTFLKEASEM-FEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVVLGQESA 286 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~~~~~ 286 (484)
-++..||+.+||+.|... .-+.+-|++.+.-+..+++.+.-.. +|...| ++++... .|.+...+|.-+...
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v-~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~ 161 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIV-TADDVARGKPAPDIYLLAAERLGVDPEE 161 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhc-cHHHHhcCCCCCHHHHHHHHHcCCChHH
Confidence 368999999999999887 9999999999999999998887765 786644 4555432 367777777778889
Q ss_pred EEEEcCChhhh
Q 041302 287 VLILDDTENAW 297 (484)
Q Consensus 287 vVIIDD~~~vw 297 (484)
+|+|+|++.--
T Consensus 162 CvviEDs~~Gi 172 (221)
T COG0637 162 CVVVEDSPAGI 172 (221)
T ss_pred eEEEecchhHH
Confidence 99999987643
No 114
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=89.27 E-value=1.3 Score=50.50 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=47.4
Q ss_pred HHHHHHHHhCCeEeee------cCCCccEEEEcCC--CChHH--HHHHhc--CCeeeChhhHHHHHHhcCCCCCCCCC
Q 041302 401 YLWKMAEQLGATCSIE------LDPSVTHVVSTDA--RTEKS--RWAAKE--AKFLVDPRWIETANFLWQRQPEENFP 466 (484)
Q Consensus 401 ~l~~la~~lGA~v~~~------i~~~vTHlVa~~~--~T~K~--~~A~~~--gi~IV~~~WL~~c~~~w~r~dE~~Y~ 466 (484)
.+.-.+..+|+.++.. +..++||+|+.-- .+.+. +.|.+. .-+||.|.|+.+|+.....++|..|+
T Consensus 804 ~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~~~~wv~~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 804 IIELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIKRKVVAPSWVDHSINENCLLPEEDFP 881 (881)
T ss_pred HHHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhcccccccCHHHHHHhhcccccCccccCC
Confidence 4456677889998743 3357899999732 23332 333332 33899999999999999999999985
No 115
>PLN02811 hydrolase
Probab=88.95 E-value=0.48 Score=45.63 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=54.5
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHH-HHhhhCCCCcccceeEEeec--CCCC------CccccccccC---
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALE-MAKLLDPSREYFNARVISRD--DGTQ------RHQKGLDVVL--- 281 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~-I~~~LDP~~~~F~~RI~sRd--~c~~------~~~KdL~~l~--- 281 (484)
+.+.||+.+||+.|.+ .|.+.|-|++.+.+... ..+...-. .+|. .+++.+ ++.. .+.+-+.++.
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~-~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~ 154 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMH-HVVTGDDPEVKQGKPAPDIFLAAARRFEDGP 154 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCC-EEEECChhhccCCCCCcHHHHHHHHHhCCCC
Confidence 5678999999999965 69999999999876553 33222211 2664 577777 5432 2344455554
Q ss_pred CCCCcEEEEcCChhhh
Q 041302 282 GQESAVLILDDTENAW 297 (484)
Q Consensus 282 ~~~~~vVIIDD~~~vw 297 (484)
...+.+|+|+|+..-.
T Consensus 155 ~~~~~~v~IgDs~~di 170 (220)
T PLN02811 155 VDPGKVLVFEDAPSGV 170 (220)
T ss_pred CCccceEEEeccHhhH
Confidence 3567899999987544
No 116
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=88.84 E-value=0.73 Score=44.46 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=44.9
Q ss_pred EEecccHHHHHHHhhhCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeec
Q 041302 215 TKLRPFVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRD 267 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd 267 (484)
+.++||+.+||+.+.+.+.+.|-|+|.+.|+..+++.+.-+. +|.+++...+
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~an~l~~~~ 118 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLEIDD 118 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hhceeeEEec
Confidence 578999999999998888999999999999999999988654 7877766433
No 117
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=88.68 E-value=0.66 Score=43.77 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=38.2
Q ss_pred hCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCCCccccccccCCCCCcEEEEcCChh
Q 041302 230 EMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQRHQKGLDVVLGQESAVLILDDTEN 295 (484)
Q Consensus 230 ~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~~~KdL~~l~~~~~~vVIIDD~~~ 295 (484)
+.+.+.|-|+.....+..+++.+.-.. +|.+ .++-.....+-+..+.-..+.+++|.|+..
T Consensus 63 ~Gi~v~I~T~~~~~~v~~~l~~lgl~~-~f~g----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~ 123 (183)
T PRK09484 63 SGIEVAIITGRKSKLVEDRMTTLGITH-LYQG----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLI 123 (183)
T ss_pred CCCEEEEEeCCCcHHHHHHHHHcCCce-eecC----CCcHHHHHHHHHHHhCCCHHHEEEECCCHH
Confidence 679999999999999999999886543 4431 111000111222333335677999988754
No 118
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=87.80 E-value=0.65 Score=45.60 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=59.2
Q ss_pred EEecccHHHHHHHhhhCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCC--------CCccccccccC-----
Q 041302 215 TKLRPFVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGT--------QRHQKGLDVVL----- 281 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~--------~~~~KdL~~l~----- 281 (484)
+|.-|-|++||-.|.+.+ .+|||||.+..|..+++.|.-.. .|.. |++=+-.. ++..+...+.+
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFeg-ii~~e~~np~~~~~vcKP~~~afE~a~k~agi 175 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEG-IICFETLNPIEKTVVCKPSEEAFEKAMKVAGI 175 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccc-eeEeeccCCCCCceeecCCHHHHHHHHHHhCC
Confidence 889999999999999988 99999999999999999998876 5643 44332211 12222222222
Q ss_pred CCCCcEEEEcCChhhhh
Q 041302 282 GQESAVLILDDTENAWT 298 (484)
Q Consensus 282 ~~~~~vVIIDD~~~vw~ 298 (484)
.+...++++||+...-.
T Consensus 176 ~~p~~t~FfDDS~~NI~ 192 (244)
T KOG3109|consen 176 DSPRNTYFFDDSERNIQ 192 (244)
T ss_pred CCcCceEEEcCchhhHH
Confidence 24789999999987654
No 119
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=87.74 E-value=0.9 Score=45.35 Aligned_cols=57 Identities=25% Similarity=0.139 Sum_probs=44.1
Q ss_pred ccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhC-CeEEEecCCc
Q 041302 163 KLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEM-FEMYIYTMGD 241 (484)
Q Consensus 163 KL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~ 241 (484)
...+++||||||+.... ...|...+.|+.+.+. +.++|.|.-.
T Consensus 4 ~kli~~DlDGTLl~~~~------------------------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR~ 47 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT------------------------------------YSYEPAKPALKALKEKGIPVIPCTSKT 47 (273)
T ss_pred ceEEEEcCcccCcCCCC------------------------------------cCcHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 46899999999997432 0234566888888765 8999999999
Q ss_pred HhHHHHHHhhhCCC
Q 041302 242 RPYALEMAKLLDPS 255 (484)
Q Consensus 242 r~YA~~I~~~LDP~ 255 (484)
...+..+++.++..
T Consensus 48 ~~~~~~~~~~l~l~ 61 (273)
T PRK00192 48 AAEVEVLRKELGLE 61 (273)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999887654
No 120
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=87.73 E-value=2.1 Score=40.36 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=65.1
Q ss_pred hhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCCe---E
Q 041302 158 LLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMFE---M 234 (484)
Q Consensus 158 ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~yE---l 234 (484)
|....=..||+|+|+||..-.. -.+-|-+.+.++++.+.|- +
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~-----------------------------------~~i~~~~~~~~~~l~~~~~~~~v 80 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYE-----------------------------------DEIPPEYAEWLNELKKQFGKDRV 80 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCc-----------------------------------CcCCHHHHHHHHHHHHHCCCCeE
Confidence 6667778999999999874332 1234556688888887763 8
Q ss_pred EEecCCc-------HhHHHHHHhhhCCCCcccceeEEeecCCCCC-ccccccccC-C-----CCCcEEEEcCC--hhhhh
Q 041302 235 YIYTMGD-------RPYALEMAKLLDPSREYFNARVISRDDGTQR-HQKGLDVVL-G-----QESAVLILDDT--ENAWT 298 (484)
Q Consensus 235 ~IyT~g~-------r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~-~~KdL~~l~-~-----~~~~vVIIDD~--~~vw~ 298 (484)
.|++|+. ..=|..+.+.|.-. +|.+ .+.++ ..+.+...+ . ..+.+++|.|| .|++.
T Consensus 81 ~IvSNsaGs~~d~~~~~a~~~~~~lgIp--vl~h------~~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~ 152 (168)
T PF09419_consen 81 LIVSNSAGSSDDPDGERAEALEKALGIP--VLRH------RAKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLM 152 (168)
T ss_pred EEEECCCCcccCccHHHHHHHHHhhCCc--EEEe------CCCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHH
Confidence 9999983 66677777777632 2322 22222 222222222 1 36789999997 47776
Q ss_pred cCCCC
Q 041302 299 KHRDN 303 (484)
Q Consensus 299 ~~~~N 303 (484)
.+.-+
T Consensus 153 gN~~G 157 (168)
T PF09419_consen 153 GNRMG 157 (168)
T ss_pred hhccC
Confidence 55433
No 121
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=87.58 E-value=1.1 Score=40.90 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=41.4
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEE
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVI 264 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~ 264 (484)
+.++||+.++|+.+.+ .+.++|.|+|.+.|+..+++.+.-. .+|++++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~~~~~ 121 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID-DVFANRLE 121 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc-hheeeeEE
Confidence 5689999999999965 5899999999999999999988655 36776654
No 122
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=86.87 E-value=1.1 Score=53.63 Aligned_cols=80 Identities=10% Similarity=0.058 Sum_probs=61.2
Q ss_pred ecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------CccccccccCCCCCcEEE
Q 041302 217 LRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVVLGQESAVLI 289 (484)
Q Consensus 217 lRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~~~~~vVI 289 (484)
+-||+.+||+.|.+ -|.+.|.|++.+.++..+++.+.-...+|. .+++.+++.. .+.+-++++.-....+|+
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd-~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~ 240 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFD-AIVSADAFENLKPAPDIFLAAAKILGVPTSECVV 240 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCC-EEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence 68999999999964 599999999999999999988765444785 5777777642 134445555556778999
Q ss_pred EcCChhhh
Q 041302 290 LDDTENAW 297 (484)
Q Consensus 290 IDD~~~vw 297 (484)
|+|++.-.
T Consensus 241 IgDs~~Di 248 (1057)
T PLN02919 241 IEDALAGV 248 (1057)
T ss_pred EcCCHHHH
Confidence 99987644
No 123
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=86.60 E-value=1.3 Score=45.74 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=38.2
Q ss_pred cEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-----CCeEEEec
Q 041302 164 LYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE-----MFEMYIYT 238 (484)
Q Consensus 164 L~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~-----~yEl~IyT 238 (484)
+.+++|+||||+++.. .-||..+||+.+.. ...+.++|
T Consensus 1 ~~~ifD~DGvL~~g~~-------------------------------------~i~ga~eal~~L~~~~~~~g~~~~flT 43 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKK-------------------------------------PIAGASDALRRLNRNQGQLKIPYIFLT 43 (321)
T ss_pred CEEEEeCcCceECCcc-------------------------------------ccHHHHHHHHHHhccccccCCCEEEEe
Confidence 4689999999998753 13667788888876 67788888
Q ss_pred CCc----HhHHHHHHhhh
Q 041302 239 MGD----RPYALEMAKLL 252 (484)
Q Consensus 239 ~g~----r~YA~~I~~~L 252 (484)
|++ +.||+.+.+.+
T Consensus 44 Nn~g~s~~~~~~~l~~~l 61 (321)
T TIGR01456 44 NGGGFSERARAEEISSLL 61 (321)
T ss_pred cCCCCCHHHHHHHHHHHc
Confidence 875 56677664443
No 124
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=86.15 E-value=1.1 Score=42.80 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=27.9
Q ss_pred HHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhhCC
Q 041302 221 VHTFLKEASEM-FEMYIYTMGDRPYALEMAKLLDP 254 (484)
Q Consensus 221 l~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~LDP 254 (484)
..+.|+.+.+. ..++|.|......+..+++.+.-
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~ 55 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGL 55 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 45788887654 78999999999999999988764
No 125
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=85.53 E-value=1.5 Score=41.65 Aligned_cols=52 Identities=31% Similarity=0.270 Sum_probs=37.4
Q ss_pred EEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhh-hCCeEEEecCCcHhH
Q 041302 166 LILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEAS-EMFEMYIYTMGDRPY 244 (484)
Q Consensus 166 LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls-~~yEl~IyT~g~r~Y 244 (484)
|++||||||+++.. .++ |...+.|+++. +-..++|.|.-+...
T Consensus 1 i~~DlDGTLl~~~~--~i~----------------------------------~~~~~al~~l~~~g~~~~i~TGR~~~~ 44 (254)
T PF08282_consen 1 IFSDLDGTLLNSDG--KIS----------------------------------PETIEALKELQEKGIKLVIATGRSYSS 44 (254)
T ss_dssp EEEECCTTTCSTTS--SSC----------------------------------HHHHHHHHHHHHTTCEEEEECSSTHHH
T ss_pred cEEEECCceecCCC--eeC----------------------------------HHHHHHHHhhcccceEEEEEccCcccc
Confidence 68999999999554 122 33456777765 668888888888888
Q ss_pred HHHHHhhhC
Q 041302 245 ALEMAKLLD 253 (484)
Q Consensus 245 A~~I~~~LD 253 (484)
+..++..+.
T Consensus 45 ~~~~~~~~~ 53 (254)
T PF08282_consen 45 IKRLLKELG 53 (254)
T ss_dssp HHHHHHHTT
T ss_pred ccccccccc
Confidence 888777554
No 126
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=84.96 E-value=1.6 Score=42.54 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=23.8
Q ss_pred HHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhhCC
Q 041302 221 VHTFLKEASEM-FEMYIYTMGDRPYALEMAKLLDP 254 (484)
Q Consensus 221 l~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~LDP 254 (484)
..++|+++.+. ..+++.|.-++..+..+++.|..
T Consensus 20 ~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 20 AREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 45777777654 77888887777777777766653
No 127
>PLN02645 phosphoglycolate phosphatase
Probab=84.45 E-value=1.8 Score=44.36 Aligned_cols=105 Identities=10% Similarity=0.060 Sum_probs=60.5
Q ss_pred hhhhhhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhh-hC
Q 041302 153 TDMKHLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEAS-EM 231 (484)
Q Consensus 153 ~~~~~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls-~~ 231 (484)
.....++.. -..+++|+||||++... + + ||..++|+.+. +.
T Consensus 19 ~~~~~~~~~-~~~~~~D~DGtl~~~~~-----------------------------------~-~-~ga~e~l~~lr~~g 60 (311)
T PLN02645 19 ENADELIDS-VETFIFDCDGVIWKGDK-----------------------------------L-I-EGVPETLDMLRSMG 60 (311)
T ss_pred HHHHHHHHh-CCEEEEeCcCCeEeCCc-----------------------------------c-C-cCHHHHHHHHHHCC
Confidence 344455553 45888999999987532 1 1 78889999996 57
Q ss_pred CeEEEecCCcHhHHHHHHhhhCCCCc-ccceeEEeecCCCCCccccccccCCCCCcEEEEcCChhhh
Q 041302 232 FEMYIYTMGDRPYALEMAKLLDPSRE-YFNARVISRDDGTQRHQKGLDVVLGQESAVLILDDTENAW 297 (484)
Q Consensus 232 yEl~IyT~g~r~YA~~I~~~LDP~~~-~F~~RI~sRd~c~~~~~KdL~~l~~~~~~vVIIDD~~~vw 297 (484)
..+++-|+.+..-...+++.|.--|- +..+.|++.......+++... + .....|.+++.....-
T Consensus 61 ~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~~l~~~~-~-~~~~~V~viG~~~~~~ 125 (311)
T PLN02645 61 KKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAAYLKSIN-F-PKDKKVYVIGEEGILE 125 (311)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHHHHHhhc-c-CCCCEEEEEcCHHHHH
Confidence 99999999885555555554433331 112445543322112222211 1 1224588888765443
No 128
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=84.30 E-value=4.6 Score=38.59 Aligned_cols=124 Identities=15% Similarity=0.046 Sum_probs=73.8
Q ss_pred ccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhh-hCCeEEEecCC-
Q 041302 163 KLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEAS-EMFEMYIYTMG- 240 (484)
Q Consensus 163 KL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls-~~yEl~IyT~g- 240 (484)
...|+||.||||+--... -+.. +. -..+.||+.+=|..+. ..|-++|+||-
T Consensus 5 ~k~lflDRDGtin~d~~~-yv~~-----------~~---------------~~~~~~g~i~al~~l~~~gy~lVvvTNQs 57 (181)
T COG0241 5 QKALFLDRDGTINIDKGD-YVDS-----------LD---------------DFQFIPGVIPALLKLQRAGYKLVVVTNQS 57 (181)
T ss_pred CcEEEEcCCCceecCCCc-ccCc-----------HH---------------HhccCccHHHHHHHHHhCCCeEEEEECCC
Confidence 679999999999843320 0010 01 1457899999999994 56999999993
Q ss_pred ---cHhH--------HHHHHhhhCCCCcccceeEEeec------CCCCCcccc----ccccCCCCCcEEEEcCCh-hhhh
Q 041302 241 ---DRPY--------ALEMAKLLDPSREYFNARVISRD------DGTQRHQKG----LDVVLGQESAVLILDDTE-NAWT 298 (484)
Q Consensus 241 ---~r~Y--------A~~I~~~LDP~~~~F~~RI~sRd------~c~~~~~Kd----L~~l~~~~~~vVIIDD~~-~vw~ 298 (484)
+..| -..|...|--.|.-|...+++.. +|.++..+- ++....+.+..++|-|+. |+=.
T Consensus 58 Gi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~ 137 (181)
T COG0241 58 GIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQA 137 (181)
T ss_pred CccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHH
Confidence 3333 33355555555656666555431 344332222 333345888999999994 4332
Q ss_pred cCCCCeEEeccccccccc
Q 041302 299 KHRDNLILMERYHFFASS 316 (484)
Q Consensus 299 ~~~~NlI~I~py~fF~~~ 316 (484)
. ....|. |+.|+.+.
T Consensus 138 a-~n~gi~--~~~~~~~~ 152 (181)
T COG0241 138 A-ENAGIK--GVLVLTGI 152 (181)
T ss_pred H-HHCCCC--ceEEEcCc
Confidence 1 112233 66666654
No 129
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=84.18 E-value=2.3 Score=41.89 Aligned_cols=59 Identities=24% Similarity=0.206 Sum_probs=47.4
Q ss_pred CccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHh-hhCCeEEEecCC
Q 041302 162 RKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEA-SEMFEMYIYTMG 240 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~l-s~~yEl~IyT~g 240 (484)
....|++||||||+..... ..|...+.|+++ .+-+.+.|-|-.
T Consensus 2 ~~kli~~DlDGTLl~~~~~------------------------------------i~~~~~~al~~~~~~g~~v~iaTGR 45 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKT------------------------------------ISPETKEALARLREKGVKVVLATGR 45 (264)
T ss_pred CeeEEEEcCCCCccCCCCc------------------------------------cCHHHHHHHHHHHHCCCEEEEECCC
Confidence 3578999999999987641 455666788877 677889999998
Q ss_pred cHhHHHHHHhhhCCCC
Q 041302 241 DRPYALEMAKLLDPSR 256 (484)
Q Consensus 241 ~r~YA~~I~~~LDP~~ 256 (484)
....+..+++.|...+
T Consensus 46 ~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 46 PLPDVLSILEELGLDG 61 (264)
T ss_pred ChHHHHHHHHHcCCCc
Confidence 8889999998888776
No 130
>PLN02954 phosphoserine phosphatase
Probab=84.14 E-value=2 Score=41.03 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=40.6
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCC-cccceeEE
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSR-EYFNARVI 264 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~-~~F~~RI~ 264 (484)
..++||+.++|+.+.+ .+.+.|-|++.+.++..+++.+.-.. .+|.+++.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~ 134 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQIL 134 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEE
Confidence 5688999999999965 58999999999999999999876432 36765443
No 131
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=83.06 E-value=1.8 Score=43.17 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=26.3
Q ss_pred cccCHHHHHHHHhhhhhhhhhcCccEEEEcCCCceeeecc
Q 041302 140 LRLGNDEIDRLRNTDMKHLLRHRKLYLILDLDHTLLNSTL 179 (484)
Q Consensus 140 l~vs~~ea~~~~~~~~~~ll~~rKL~LVLDLDeTLIhs~~ 179 (484)
|.+-.-..+.+.-.+....-+.++..+|||||||++....
T Consensus 56 L~~Q~yn~Ak~~~d~~~k~~k~K~~aVvlDlDETvLdNs~ 95 (274)
T COG2503 56 LYLQAYNSAKIALDTQAKKKKGKKKAVVLDLDETVLDNSA 95 (274)
T ss_pred HHHHHhhhHHHHHHhhhccccCCCceEEEecchHhhcCcc
Confidence 4443333444444444455667888999999999997654
No 132
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=82.30 E-value=3.3 Score=43.77 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=63.0
Q ss_pred ccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEeeecCCCccEEEEcCC--CChHHHHHHhcCCeeeChhhHHHHHH
Q 041302 378 EVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCSIELDPSVTHVVSTDA--RTEKSRWAAKEAKFLVDPRWIETANF 455 (484)
Q Consensus 378 ~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~--~T~K~~~A~~~gi~IV~~~WL~~c~~ 455 (484)
.+-.|..|+|+|-+-. .+..|...+...|-.++..++..+.=|||..+ .+.|...|...||++|+-.=+.+++.
T Consensus 293 ~lv~Gm~v~~~~e~~~----~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~ 368 (377)
T PRK05601 293 GLVAGMEVVVAPEITM----DPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVE 368 (377)
T ss_pred ccccCcEEEEeCCccC----CHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHH
Confidence 4778999999986543 35688888889999999999999889999865 47799999999999999888887766
Q ss_pred h
Q 041302 456 L 456 (484)
Q Consensus 456 ~ 456 (484)
.
T Consensus 369 ~ 369 (377)
T PRK05601 369 R 369 (377)
T ss_pred H
Confidence 4
No 133
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=82.24 E-value=2.4 Score=40.00 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=28.7
Q ss_pred cccHHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhh
Q 041302 218 RPFVHTFLKEASEM-FEMYIYTMGDRPYALEMAKLL 252 (484)
Q Consensus 218 RPgl~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~L 252 (484)
.|.+.+.|+++.+. ..++|-|..+..++..+++.+
T Consensus 19 ~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 19 SPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 36677888888776 788999999999999888764
No 134
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=81.64 E-value=3.6 Score=38.01 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=36.8
Q ss_pred EEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-CCeEEEecCCcHh
Q 041302 165 YLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE-MFEMYIYTMGDRP 243 (484)
Q Consensus 165 ~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~ 243 (484)
.+++|+|+||+.+.....+-. +-+.. +..|++.++++.+.+ -|.+.+.|.-...
T Consensus 1 iVisDIDGTL~~sd~~~~~~~----------------------~~~~~---~~~~~~~~a~~~l~~~G~~ivy~TGRp~~ 55 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVP----------------------IIGKD---WTHPGVAKLYRDIQNNGYKILYLTARPIG 55 (157)
T ss_pred CEEEecCCCCccccccccccc----------------------ccccC---cCCHHHHHHHHHHHHcCCeEEEEcCCcHH
Confidence 378999999997764211100 00111 247999999999975 5777777777666
Q ss_pred HHH
Q 041302 244 YAL 246 (484)
Q Consensus 244 YA~ 246 (484)
-+.
T Consensus 56 ~~~ 58 (157)
T smart00775 56 QAD 58 (157)
T ss_pred HHH
Confidence 554
No 135
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=81.36 E-value=3.3 Score=40.61 Aligned_cols=37 Identities=16% Similarity=0.046 Sum_probs=26.7
Q ss_pred ccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCC
Q 041302 219 PFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPS 255 (484)
Q Consensus 219 Pgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~ 255 (484)
|...+.|+++.+ -+.+.|-|..+...+..+++.+...
T Consensus 19 ~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 19 PSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 344567777765 4888888888888888888777654
No 136
>PTZ00445 p36-lilke protein; Provisional
Probab=81.30 E-value=1.9 Score=42.28 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=53.6
Q ss_pred ccCHHHHHHHHhhhhhhhhhcCccEEEEcCCCcee--eeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEec
Q 041302 141 RLGNDEIDRLRNTDMKHLLRHRKLYLILDLDHTLL--NSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLR 218 (484)
Q Consensus 141 ~vs~~ea~~~~~~~~~~ll~~rKL~LVLDLDeTLI--hs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklR 218 (484)
.+|..++...- .+.|.+.+=..+++|||+||| ||--.-+.. .| ...+....|
T Consensus 24 ~~~~~~~~~~~---v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~-------------~~----------~~~~~~~~t 77 (219)
T PTZ00445 24 HLNPHESADKF---VDLLNECGIKVIASDFDLTMITKHSGGYIDPD-------------ND----------DIRVLTSVT 77 (219)
T ss_pred cCCHHHHHHHH---HHHHHHcCCeEEEecchhhhhhhhcccccCCC-------------cc----------hhhhhccCC
Confidence 34666665432 334566677899999999999 554311100 01 123557799
Q ss_pred ccHHHHHHHhhh-CCeEEEecCCcHhH
Q 041302 219 PFVHTFLKEASE-MFEMYIYTMGDRPY 244 (484)
Q Consensus 219 Pgl~eFL~~ls~-~yEl~IyT~g~r~Y 244 (484)
|.+..+++.|.+ .+-|.|-|.+.+.-
T Consensus 78 pefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 78 PDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred HHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 999999999974 79999999998865
No 137
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=80.19 E-value=4 Score=38.92 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=27.4
Q ss_pred ccHHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhhCCCC
Q 041302 219 PFVHTFLKEASEM-FEMYIYTMGDRPYALEMAKLLDPSR 256 (484)
Q Consensus 219 Pgl~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~LDP~~ 256 (484)
|...+-|+++.+. +.++|.|.-....+..+++.|+..+
T Consensus 21 ~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 21 ERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 4445666666544 7888888888888888888887764
No 138
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=79.69 E-value=4.5 Score=40.24 Aligned_cols=17 Identities=47% Similarity=0.632 Sum_probs=14.3
Q ss_pred CccEEEEcCCCceeeec
Q 041302 162 RKLYLILDLDHTLLNST 178 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~ 178 (484)
.+..+++||||||++..
T Consensus 6 ~~~lI~~DlDGTLL~~~ 22 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSH 22 (271)
T ss_pred CCeEEEEeCccCCcCCC
Confidence 46788999999999863
No 139
>PLN03017 trehalose-phosphatase
Probab=79.15 E-value=3.5 Score=43.55 Aligned_cols=64 Identities=17% Similarity=0.070 Sum_probs=45.9
Q ss_pred hhhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCCeEE
Q 041302 156 KHLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMFEMY 235 (484)
Q Consensus 156 ~~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~yEl~ 235 (484)
..+.+.+++.|+||+||||+--...+ -...+-|.+.+-|++|++.+.++
T Consensus 104 ~~~~~~k~~llflD~DGTL~Piv~~p-------------------------------~~a~i~~~~~~aL~~La~~~~va 152 (366)
T PLN03017 104 MEASRGKQIVMFLDYDGTLSPIVDDP-------------------------------DKAFMSSKMRRTVKKLAKCFPTA 152 (366)
T ss_pred HHHhcCCCeEEEEecCCcCcCCcCCc-------------------------------ccccCCHHHHHHHHHHhcCCcEE
Confidence 34567789999999999999322211 01234577889999999999999
Q ss_pred EecCCcHhHHHHHHh
Q 041302 236 IYTMGDRPYALEMAK 250 (484)
Q Consensus 236 IyT~g~r~YA~~I~~ 250 (484)
|-|--...-+..+..
T Consensus 153 IvSGR~~~~l~~~~~ 167 (366)
T PLN03017 153 IVTGRCIDKVYNFVK 167 (366)
T ss_pred EEeCCCHHHHHHhhc
Confidence 988777776666643
No 140
>PRK10444 UMP phosphatase; Provisional
Probab=79.06 E-value=3.8 Score=40.76 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=34.4
Q ss_pred EEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-CCeEEEecCCcHh
Q 041302 165 YLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE-MFEMYIYTMGDRP 243 (484)
Q Consensus 165 ~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~ 243 (484)
.+++||||||++... .=||..+||+.+.+ -..+++.|+.+..
T Consensus 3 ~v~~DlDGtL~~~~~-------------------------------------~~p~a~~~l~~L~~~g~~~~~~Tn~~~~ 45 (248)
T PRK10444 3 NVICDIDGVLMHDNV-------------------------------------AVPGAAEFLHRILDKGLPLVLLTNYPSQ 45 (248)
T ss_pred EEEEeCCCceEeCCe-------------------------------------eCccHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 678999999998752 12566677777754 4667777777665
Q ss_pred HHHHHHhhh
Q 041302 244 YALEMAKLL 252 (484)
Q Consensus 244 YA~~I~~~L 252 (484)
=+..+++.|
T Consensus 46 ~~~~~~~~l 54 (248)
T PRK10444 46 TGQDLANRF 54 (248)
T ss_pred CHHHHHHHH
Confidence 555555554
No 141
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=79.06 E-value=4.4 Score=39.90 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=26.7
Q ss_pred ccCCCCCcchHHHHHHHHHhCCeEeeec---------C--CCccEEEEcCCCChHHHHHH
Q 041302 390 VFPTKFPADTHYLWKMAEQLGATCSIEL---------D--PSVTHVVSTDARTEKSRWAA 438 (484)
Q Consensus 390 ~~p~~~~~~~~~l~~la~~lGA~v~~~i---------~--~~vTHlVa~~~~T~K~~~A~ 438 (484)
+.|.+.. .-+-+..+++.+|-....-+ . ..+-|=||.....+.++.+.
T Consensus 190 I~~~gvs-Kg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA~~~vK~~A 248 (270)
T PRK10513 190 ILDKRVN-KGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNAIPSVKEVA 248 (270)
T ss_pred EeCCCCC-hHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCccHHHHHhc
Confidence 4454432 34677888888885432111 1 24566677666666665543
No 142
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=78.77 E-value=2.1 Score=41.83 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=52.1
Q ss_pred EEecccHHHHHHHhhhCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC------CccccccccCCCCCcEE
Q 041302 215 TKLRPFVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ------RHQKGLDVVLGQESAVL 288 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~------~~~KdL~~l~~~~~~vV 288 (484)
+.+-||+.++|+.|.+.|.+.|.|+|+.. ++.+.- ..+|. .|++.++... .+.+-++++..+.+.+|
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl-~~~fd-~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~ 184 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGL-GDYFE-FVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEIL 184 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCc-HHhhc-eeEecccCCcCCCcHHHHHHHHHHcCCChhHEE
Confidence 55669999999999988999999999875 233322 23674 4665544321 12333445555678899
Q ss_pred EEcCC--hhhhhc
Q 041302 289 ILDDT--ENAWTK 299 (484)
Q Consensus 289 IIDD~--~~vw~~ 299 (484)
+|.|+ .|+-..
T Consensus 185 ~VGD~~~~Di~~A 197 (238)
T PRK10748 185 HVGDDLTTDVAGA 197 (238)
T ss_pred EEcCCcHHHHHHH
Confidence 99887 477654
No 143
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=78.50 E-value=3.7 Score=37.84 Aligned_cols=76 Identities=22% Similarity=0.355 Sum_probs=49.6
Q ss_pred EEecccHHHHHHHhhhCCeEEEecCCcHhHHHH------HHh---hhCCCCcccceeEEeecCCCCCccccccccCCCCC
Q 041302 215 TKLRPFVHTFLKEASEMFEMYIYTMGDRPYALE------MAK---LLDPSREYFNARVISRDDGTQRHQKGLDVVLGQES 285 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~yEl~IyT~g~r~YA~~------I~~---~LDP~~~~F~~RI~sRd~c~~~~~KdL~~l~~~~~ 285 (484)
++.-||.++-+++|-+.|++||-|+++--|-.. +.+ .|+|+.. || |.. |++- +
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~-----vf----Cgn---Kniv------k 128 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNI-----VF----CGN---KNIV------K 128 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHHCCCCChhhE-----EE----ecC---CCeE------E
Confidence 678899999999999999999999996544221 111 3455442 22 221 2221 2
Q ss_pred cEEEEcCChhhhhcCCCCeEEec
Q 041302 286 AVLILDDTENAWTKHRDNLILME 308 (484)
Q Consensus 286 ~vVIIDD~~~vw~~~~~NlI~I~ 308 (484)
.=++|||.|..-....+|-|.-.
T Consensus 129 aDilIDDnp~nLE~F~G~kIlFd 151 (180)
T COG4502 129 ADILIDDNPLNLENFKGNKILFD 151 (180)
T ss_pred eeEEecCCchhhhhccCceEEEe
Confidence 34789999887766667766543
No 144
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=78.29 E-value=5.2 Score=38.62 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=57.9
Q ss_pred EEEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCC--Ccccc----ccccCCCCCc
Q 041302 214 MTKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQ--RHQKG----LDVVLGQESA 286 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~--~~~Kd----L~~l~~~~~~ 286 (484)
...+-||+.+.|..+.+ -|.+.|.|+..+..++.+++.++-.. +|.- +++-++... +.-.. +..+..+.+.
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~-i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~ 164 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDV-IVGGDDVPPPKPDPEPLLLLLEKLGLDPEE 164 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccce-EEcCCCCCCCCcCHHHHHHHHHHhCCChhh
Confidence 36789999999999965 58999999999999999999988865 8853 555233321 12222 2233334358
Q ss_pred EEEEcCChh-hhh
Q 041302 287 VLILDDTEN-AWT 298 (484)
Q Consensus 287 vVIIDD~~~-vw~ 298 (484)
+|+|-|+.. .=.
T Consensus 165 ~l~VGDs~~Di~a 177 (220)
T COG0546 165 ALMVGDSLNDILA 177 (220)
T ss_pred eEEECCCHHHHHH
Confidence 899988754 443
No 145
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=77.54 E-value=4.2 Score=38.10 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=41.9
Q ss_pred EEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEE
Q 041302 215 TKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVI 264 (484)
Q Consensus 215 vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~ 264 (484)
.+++|++.++|+.+.+ .+.++|-|++...|+..+++.+.-+. +|+.++.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~ 135 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLE 135 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceE
Confidence 4689999999999865 59999999999999999999887655 6766555
No 146
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=76.70 E-value=7.2 Score=38.29 Aligned_cols=17 Identities=41% Similarity=0.432 Sum_probs=13.6
Q ss_pred ccEEEEcCCCceeeecc
Q 041302 163 KLYLILDLDHTLLNSTL 179 (484)
Q Consensus 163 KL~LVLDLDeTLIhs~~ 179 (484)
...+++||||||+....
T Consensus 3 ~kli~~DlDGTLl~~~~ 19 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK 19 (272)
T ss_pred ccEEEEeCCCceECCCC
Confidence 35789999999997643
No 147
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=76.38 E-value=4.2 Score=40.73 Aligned_cols=59 Identities=14% Similarity=-0.046 Sum_probs=39.0
Q ss_pred ccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh--CCeEEEecCC
Q 041302 163 KLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE--MFEMYIYTMG 240 (484)
Q Consensus 163 KL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~--~yEl~IyT~g 240 (484)
++.|++|+||||+.....+ .. ..+-|.+.+-|+.|++ ...++|-|--
T Consensus 14 ~~li~~D~DGTLl~~~~~p--~~-----------------------------~~i~~~~~~~L~~L~~~~g~~v~i~SGR 62 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHP--DQ-----------------------------VVVPDNILQGLQLLATANDGALALISGR 62 (266)
T ss_pred CEEEEEecCCCCCCCCCCc--cc-----------------------------ccCCHHHHHHHHHHHhCCCCcEEEEeCC
Confidence 6899999999999765421 10 1234777888888876 3567776666
Q ss_pred cHhHHHHHHhhh
Q 041302 241 DRPYALEMAKLL 252 (484)
Q Consensus 241 ~r~YA~~I~~~L 252 (484)
...-+..+++.+
T Consensus 63 ~~~~~~~~~~~~ 74 (266)
T PRK10187 63 SMVELDALAKPY 74 (266)
T ss_pred CHHHHHHhcCcc
Confidence 666555555443
No 148
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=75.95 E-value=4.6 Score=40.21 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=36.8
Q ss_pred EEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-CCeEEEecCCcHh
Q 041302 165 YLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE-MFEMYIYTMGDRP 243 (484)
Q Consensus 165 ~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~ 243 (484)
.+++||||||++..... =..=||..++|+.+.+ -..+.+.|+.+..
T Consensus 3 ~i~~D~DGtl~~~~~~~---------------------------------~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 3 GVLLDISGVLYISDAKS---------------------------------GVAVPGSQEAVKRLRGASVKVRFVTNTTKE 49 (257)
T ss_pred EEEEeCCCeEEeCCCcc---------------------------------cCcCCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 68999999999775310 0024788899999975 4889999986655
Q ss_pred HHHHHHhh
Q 041302 244 YALEMAKL 251 (484)
Q Consensus 244 YA~~I~~~ 251 (484)
=...+.+.
T Consensus 50 ~~~~~~~~ 57 (257)
T TIGR01458 50 SKQDLLER 57 (257)
T ss_pred CHHHHHHH
Confidence 33333333
No 149
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=75.59 E-value=5.1 Score=40.65 Aligned_cols=53 Identities=17% Similarity=0.051 Sum_probs=38.8
Q ss_pred CccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhC-CeEEEecCC
Q 041302 162 RKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEM-FEMYIYTMG 240 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g 240 (484)
+.-+.++|||+||++-.. .=||..+||+.|.+. =.+++-||+
T Consensus 7 ~y~~~l~DlDGvl~~G~~-------------------------------------~ipga~e~l~~L~~~g~~~iflTNn 49 (269)
T COG0647 7 KYDGFLFDLDGVLYRGNE-------------------------------------AIPGAAEALKRLKAAGKPVIFLTNN 49 (269)
T ss_pred hcCEEEEcCcCceEeCCc-------------------------------------cCchHHHHHHHHHHcCCeEEEEeCC
Confidence 455789999999997764 127888999999766 778888988
Q ss_pred cHhHHHHHHhh
Q 041302 241 DRPYALEMAKL 251 (484)
Q Consensus 241 ~r~YA~~I~~~ 251 (484)
++.-+..+.+.
T Consensus 50 ~~~s~~~~~~~ 60 (269)
T COG0647 50 STRSREVVAAR 60 (269)
T ss_pred CCCCHHHHHHH
Confidence 76544444433
No 150
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=75.40 E-value=2.1 Score=40.44 Aligned_cols=77 Identities=19% Similarity=0.172 Sum_probs=44.2
Q ss_pred EEecccHHHHHHHhhhC-CeEEEecCCcHh-H---HHHHHhhhCCC--CcccceeEEeecCCCCCccccccccCCCCCcE
Q 041302 215 TKLRPFVHTFLKEASEM-FEMYIYTMGDRP-Y---ALEMAKLLDPS--REYFNARVISRDDGTQRHQKGLDVVLGQESAV 287 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~-yEl~IyT~g~r~-Y---A~~I~~~LDP~--~~~F~~RI~sRd~c~~~~~KdL~~l~~~~~~v 287 (484)
...=||+.+.|++|.+. |++++-|+.... | +..-.+.|+-. +..+.+.+++. -|.+ +.++
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~-------~K~~--v~~D---- 138 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTG-------DKTL--VGGD---- 138 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEES-------SGGG--C--S----
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEec-------CCCe--Eecc----
Confidence 67789999999999988 588877777655 2 34445556554 22223444432 2432 3333
Q ss_pred EEEcCChhhhhcCCCCe
Q 041302 288 LILDDTENAWTKHRDNL 304 (484)
Q Consensus 288 VIIDD~~~vw~~~~~Nl 304 (484)
|+|||++..-......+
T Consensus 139 vlIDD~~~n~~~~~~~g 155 (191)
T PF06941_consen 139 VLIDDRPHNLEQFANAG 155 (191)
T ss_dssp EEEESSSHHHSS-SSES
T ss_pred EEecCChHHHHhccCCC
Confidence 89999998876443444
No 151
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=75.35 E-value=3.9 Score=42.87 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=45.9
Q ss_pred ceeEEEEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhh-C-----CC-CcccceeEEeec
Q 041302 210 FMNMMTKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLL-D-----PS-REYFNARVISRD 267 (484)
Q Consensus 210 ~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~L-D-----P~-~~~F~~RI~sRd 267 (484)
.+.-||++-||+.++|+.+.+ -..+.|-|++...|++.+++.+ + |+ ..+|. -|++..
T Consensus 178 dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD-~IIt~a 242 (343)
T TIGR02244 178 NPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFD-VVIVDA 242 (343)
T ss_pred CHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCc-EEEeCC
Confidence 356789999999999999965 4899999999999999999996 6 33 45773 455433
No 152
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=75.12 E-value=6.4 Score=39.39 Aligned_cols=150 Identities=17% Similarity=0.234 Sum_probs=84.7
Q ss_pred CccEEEEcCCCceeeeccCCCCChhhhh---hh-ccc--ccccccccccee--e---eeceeEEEEecccHHHHHHHhhh
Q 041302 162 RKLYLILDLDHTLLNSTLLLHLTPEEDY---LK-SQA--DSLQDVSKGSLF--M---LAFMNMMTKLRPFVHTFLKEASE 230 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~~~~~~~~~e~~---~~-~~~--~~~~d~~~~~~f--~---l~~~~~~vklRPgl~eFL~~ls~ 230 (484)
....+|+|+|+||+-... .++...|+ .. .+. .+..+..+ ..| . +....-+...-|.+.+|++.+++
T Consensus 19 ~~tLvvfDiDdTLi~~~~--~lg~~~w~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~ 95 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQ--PLGSPAWYQWQLGKLQKRGKSEYKAVE-CIFEEWLSLIFELRKMELIESDVPNIINSLQN 95 (252)
T ss_pred CCeEEEEEcchhhhcCcc--ccCCchhHHHHHHHHHhhccchhhhhh-HHHHHHHHHHHhhcceEEcchhHHHHHHHHHH
Confidence 678899999999997663 23332232 11 100 00000000 001 0 00122356678999999999985
Q ss_pred -CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCC-----------C------------CCcccc--c----ccc
Q 041302 231 -MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDG-----------T------------QRHQKG--L----DVV 280 (484)
Q Consensus 231 -~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c-----------~------------~~~~Kd--L----~~l 280 (484)
..-+..+|.....|...-++.|=-.|.=|.+..+ +.+. . ...-|. | ..+
T Consensus 96 ~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~-~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~ 174 (252)
T PF11019_consen 96 KGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSF-PEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKI 174 (252)
T ss_pred CCCcEEEEcCCChhhHHHHHHHHHHCCCCcccccc-ccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHc
Confidence 5999999999999999988876444444443321 1110 0 011121 2 223
Q ss_pred CCCCCcEEEEcCChhhhh----cCCCCeEEecccccccc
Q 041302 281 LGQESAVLILDDTENAWT----KHRDNLILMERYHFFAS 315 (484)
Q Consensus 281 ~~~~~~vVIIDD~~~vw~----~~~~NlI~I~py~fF~~ 315 (484)
....+.||+|||+.+.-. ......|..--|+|-..
T Consensus 175 ~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~~ 213 (252)
T PF11019_consen 175 NQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYTGA 213 (252)
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcch
Confidence 345789999999987432 22346777777776443
No 153
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=74.54 E-value=6 Score=38.92 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=25.7
Q ss_pred HHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhhCC
Q 041302 221 VHTFLKEASEM-FEMYIYTMGDRPYALEMAKLLDP 254 (484)
Q Consensus 221 l~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~LDP 254 (484)
..++|+.+.+. ..++|.|.-+...+..+++.++.
T Consensus 21 ~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~ 55 (256)
T TIGR01486 21 AKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGL 55 (256)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 45778887664 78888888888878888877763
No 154
>PLN02151 trehalose-phosphatase
Probab=74.43 E-value=5.4 Score=42.02 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=47.4
Q ss_pred hhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCCeEEE
Q 041302 157 HLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMFEMYI 236 (484)
Q Consensus 157 ~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~yEl~I 236 (484)
.+.+.+++.|+||+||||+--...+ .-+..-|.+.+-|+.|++.+.+.|
T Consensus 92 ~~~~~~~~ll~lDyDGTL~PIv~~P-------------------------------~~A~~~~~~~~aL~~La~~~~vaI 140 (354)
T PLN02151 92 HKSEGKQIVMFLDYDGTLSPIVDDP-------------------------------DRAFMSKKMRNTVRKLAKCFPTAI 140 (354)
T ss_pred HhhcCCceEEEEecCccCCCCCCCc-------------------------------ccccCCHHHHHHHHHHhcCCCEEE
Confidence 4556688999999999999332211 124466899999999999999999
Q ss_pred ecCCcHhHHHHHHh
Q 041302 237 YTMGDRPYALEMAK 250 (484)
Q Consensus 237 yT~g~r~YA~~I~~ 250 (484)
-|--.+.-...++.
T Consensus 141 vSGR~~~~l~~~~~ 154 (354)
T PLN02151 141 VSGRCREKVSSFVK 154 (354)
T ss_pred EECCCHHHHHHHcC
Confidence 88877776666554
No 155
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.30 E-value=2.5 Score=46.03 Aligned_cols=131 Identities=13% Similarity=0.158 Sum_probs=70.7
Q ss_pred hhhhhhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-C
Q 041302 153 TDMKHLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE-M 231 (484)
Q Consensus 153 ~~~~~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~-~ 231 (484)
.-...+....|.+||||||+||.--..-.+ +.. +++-... .+|..++ -+++|.+.+.+ -
T Consensus 212 Sl~~A~~g~~kK~LVLDLDNTLWGGVIGed-Gv~----GI~Ls~~----------~~G~~fk-----~fQ~~Ik~l~kqG 271 (574)
T COG3882 212 SLLAAMSGKSKKALVLDLDNTLWGGVIGED-GVD----GIRLSNS----------AEGEAFK-----TFQNFIKGLKKQG 271 (574)
T ss_pred HHHHHhhCcccceEEEecCCcccccccccc-ccc----ceeecCC----------CCchhHH-----HHHHHHHHHHhcc
Confidence 344556778899999999999986654211 000 0000000 0011122 14566666654 4
Q ss_pred CeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCC---C----Ccccccc----ccCCCCCcEEEEcCChhhhhcC
Q 041302 232 FEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGT---Q----RHQKGLD----VVLGQESAVLILDDTENAWTKH 300 (484)
Q Consensus 232 yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~---~----~~~KdL~----~l~~~~~~vVIIDD~~~vw~~~ 300 (484)
+=+.|++..+..=|..+... -| +.|+ +++.. . +-.-++. .+.-+.+.+|+|||+|---..-
T Consensus 272 VlLav~SKN~~~da~evF~k-hp------~MiL-keedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE~v 343 (574)
T COG3882 272 VLLAVCSKNTEKDAKEVFRK-HP------DMIL-KEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERELV 343 (574)
T ss_pred EEEEEecCCchhhHHHHHhh-CC------CeEe-eHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHHHH
Confidence 66889999988888877652 12 3466 33321 1 1122222 2344778889999988654332
Q ss_pred CCCe-EEecccc
Q 041302 301 RDNL-ILMERYH 311 (484)
Q Consensus 301 ~~Nl-I~I~py~ 311 (484)
..++ |.|.+|-
T Consensus 344 k~~~~v~Vi~~~ 355 (574)
T COG3882 344 KRELPVSVIEFP 355 (574)
T ss_pred HhcCceeeccCC
Confidence 2222 5555553
No 156
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=74.04 E-value=8.1 Score=36.92 Aligned_cols=56 Identities=20% Similarity=0.177 Sum_probs=34.5
Q ss_pred cEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh-CCeEEEecCCcH
Q 041302 164 LYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE-MFEMYIYTMGDR 242 (484)
Q Consensus 164 L~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g~r 242 (484)
..+++||||||+.... . +.|...+-|+++.+ -..++|-|.-+.
T Consensus 4 kli~~DlDGTLl~~~~--~----------------------------------i~~~~~~al~~l~~~G~~~~iaTGR~~ 47 (230)
T PRK01158 4 KAIAIDIDGTITDKDR--R----------------------------------LSLKAVEAIRKAEKLGIPVILATGNVL 47 (230)
T ss_pred eEEEEecCCCcCCCCC--c----------------------------------cCHHHHHHHHHHHHCCCEEEEEcCCch
Confidence 5789999999996432 1 22333455555543 356666666666
Q ss_pred hHHHHHHhhhCCC
Q 041302 243 PYALEMAKLLDPS 255 (484)
Q Consensus 243 ~YA~~I~~~LDP~ 255 (484)
..+..+++.|...
T Consensus 48 ~~~~~~~~~l~~~ 60 (230)
T PRK01158 48 CFARAAAKLIGTS 60 (230)
T ss_pred HHHHHHHHHhCCC
Confidence 6666666666544
No 157
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=73.83 E-value=4.9 Score=46.73 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=62.3
Q ss_pred cCchhHHHHhhhhcccccceeeeeeeccCCC----CCc--chHHHHHHHHHhCCeEeeec---C---------CCccEEE
Q 041302 364 AGRDVRQVLKMVRGEVLKGCKLVFSHVFPTK----FPA--DTHYLWKMAEQLGATCSIEL---D---------PSVTHVV 425 (484)
Q Consensus 364 ~~~DVr~IL~~lr~~vL~G~~IvfSG~~p~~----~~~--~~~~l~~la~~lGA~v~~~i---~---------~~vTHlV 425 (484)
+.++-..|++..+.+-|+|-++...+.+... ..| .--.+|.-+.+.|+.-+-+. + +-.-||+
T Consensus 1044 ds~l~~~i~~fn~~~nLkd~~l~vk~~l~~~~v~q~gp~~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~ 1123 (1176)
T KOG3548|consen 1044 DSQLMPAIEPFNPSENLKDTTLYVKSTLSAREVTQTGPGGTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLV 1123 (1176)
T ss_pred ccccccCccccCchhhccceeeEeeccccceeEEEecCCcchHHHHHHHHHhhchheecccccccccccccccceeEEEe
Confidence 4455566666666777777666666542211 011 23466777777776655443 1 1234666
Q ss_pred EcCCCChHHHHHHhcCCeeeChhhHHHHHHhcCCCC
Q 041302 426 STDARTEKSRWAAKEAKFLVDPRWIETANFLWQRQP 461 (484)
Q Consensus 426 a~~~~T~K~~~A~~~gi~IV~~~WL~~c~~~w~r~d 461 (484)
+...++.-.+.|-..+.++|+++||.+|+-......
T Consensus 1124 d~~~~~svmk~ad~l~~pvvs~EWvIQtiI~~~~i~ 1159 (1176)
T KOG3548|consen 1124 DGTFRDSVMKYADTLGAPVVSSEWVIQTIILGKAIE 1159 (1176)
T ss_pred cCccHHHHHHHHHHhCCCccChhHhheeeeccccCC
Confidence 666667767778888999999999999988766544
No 158
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=73.42 E-value=6.2 Score=39.58 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=18.2
Q ss_pred ccHHHHHHHhhh-CCeEEEecCCc
Q 041302 219 PFVHTFLKEASE-MFEMYIYTMGD 241 (484)
Q Consensus 219 Pgl~eFL~~ls~-~yEl~IyT~g~ 241 (484)
||..++|+++.+ ...+++.|+++
T Consensus 21 ~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 21 PGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCC
Confidence 677899999875 57888999865
No 159
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=73.31 E-value=2.6 Score=41.50 Aligned_cols=62 Identities=18% Similarity=0.087 Sum_probs=40.4
Q ss_pred CccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCCeEEEecCCc
Q 041302 162 RKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMFEMYIYTMGD 241 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~ 241 (484)
||..|+||+||||+-....+ ...+.-|++.+.|+.|++.....||=.+.
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p-------------------------------~~~~~~~~~~~~L~~L~~~~~~~v~ivSG 50 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDP-------------------------------DAAVVSDRLLTILQKLAARPHNAIWIISG 50 (244)
T ss_pred CcEEEEEecCccccCCcCCC-------------------------------cccCCCHHHHHHHHHHHhCCCCeEEEEEC
Confidence 67899999999999543211 01345689999999999987665444444
Q ss_pred HhHHHHHHhhhCCC
Q 041302 242 RPYALEMAKLLDPS 255 (484)
Q Consensus 242 r~YA~~I~~~LDP~ 255 (484)
|.+. .+...+.|.
T Consensus 51 R~~~-~~~~~~~~~ 63 (244)
T TIGR00685 51 RKFL-EKWLGVKLP 63 (244)
T ss_pred CChh-hccccCCCC
Confidence 4553 334444443
No 160
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=71.16 E-value=9.6 Score=37.72 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=29.1
Q ss_pred ccCCCCCcchHHHHHHHHHhCCeEeeec---------C--CCccEEEEcCCCChHHHHHH
Q 041302 390 VFPTKFPADTHYLWKMAEQLGATCSIEL---------D--PSVTHVVSTDARTEKSRWAA 438 (484)
Q Consensus 390 ~~p~~~~~~~~~l~~la~~lGA~v~~~i---------~--~~vTHlVa~~~~T~K~~~A~ 438 (484)
+.|.+.. .-+-+..+++.+|-....-+ . ..+.|=||...+.+.++.+.
T Consensus 182 I~~~g~s-Kg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~~A 240 (272)
T PRK15126 182 VLPVGCN-KGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRAEL 240 (272)
T ss_pred eecCCCC-hHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChHHHHHhC
Confidence 4455432 34678888999986432211 1 24677788777777776554
No 161
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=70.97 E-value=8 Score=36.80 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=11.5
Q ss_pred EEEcCCCceeeecc
Q 041302 166 LILDLDHTLLNSTL 179 (484)
Q Consensus 166 LVLDLDeTLIhs~~ 179 (484)
+++|||+||+++..
T Consensus 1 i~~DlDGTLl~~~~ 14 (225)
T TIGR01482 1 IASDIDGTLTDPNR 14 (225)
T ss_pred CeEeccCccCCCCc
Confidence 57999999997653
No 162
>PLN02580 trehalose-phosphatase
Probab=70.66 E-value=8.4 Score=41.03 Aligned_cols=64 Identities=19% Similarity=0.172 Sum_probs=49.3
Q ss_pred hhhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCCeEE
Q 041302 156 KHLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMFEMY 235 (484)
Q Consensus 156 ~~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~yEl~ 235 (484)
..+.+.+++.|+||.||||.--...+ --+..-|++++-|+.|++.+.+.
T Consensus 112 ~~~~~~k~~~LfLDyDGTLaPIv~~P-------------------------------d~A~~s~~~~~aL~~La~~~~VA 160 (384)
T PLN02580 112 ANFAKGKKIALFLDYDGTLSPIVDDP-------------------------------DRALMSDAMRSAVKNVAKYFPTA 160 (384)
T ss_pred HHHhhcCCeEEEEecCCccCCCCCCc-------------------------------ccccCCHHHHHHHHHHhhCCCEE
Confidence 34567789999999999998433211 12456689999999999999999
Q ss_pred EecCCcHhHHHHHHh
Q 041302 236 IYTMGDRPYALEMAK 250 (484)
Q Consensus 236 IyT~g~r~YA~~I~~ 250 (484)
|-|--.+.-....+.
T Consensus 161 IVSGR~~~~L~~~l~ 175 (384)
T PLN02580 161 IISGRSRDKVYELVG 175 (384)
T ss_pred EEeCCCHHHHHHHhC
Confidence 999888877766664
No 163
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=70.56 E-value=8.2 Score=38.16 Aligned_cols=48 Identities=10% Similarity=-0.024 Sum_probs=27.8
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCC-ChHHHHHHhcCCeeeChhhHH
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDAR-TEKSRWAAKEAKFLVDPRWIE 451 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~-T~K~~~A~~~gi~IV~~~WL~ 451 (484)
+|....+...++.+|. + ..++|..... ..-+.-|.+.|++.|...|-.
T Consensus 178 KP~~~~~~~~~~~~~~------~--~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~ 226 (249)
T TIGR01457 178 KPNAIIMEKAVEHLGT------E--REETLMVGDNYLTDIRAGIDAGIDTLLVHTGV 226 (249)
T ss_pred CChHHHHHHHHHHcCC------C--cccEEEECCCchhhHHHHHHcCCcEEEEcCCC
Confidence 5666666666666663 2 2333433332 245667788888777666643
No 164
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=70.42 E-value=22 Score=35.27 Aligned_cols=130 Identities=12% Similarity=-0.006 Sum_probs=69.8
Q ss_pred hhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHh-hhCCeEEE
Q 041302 158 LLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEA-SEMFEMYI 236 (484)
Q Consensus 158 ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~l-s~~yEl~I 236 (484)
+-..+|..+|||+|+|++-...-. .....+ .... + ...|.-=-..---..-|++.+|++.+ +.-++|++
T Consensus 72 ~~~dg~~A~V~DIDET~LsN~py~----~~~~~g--~~~~-~---~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~ 141 (229)
T TIGR01675 72 LSGDGMDAWIFDVDDTLLSNIPYY----KKHGYG--TEKT-D---PTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFL 141 (229)
T ss_pred ccCCCCcEEEEccccccccCHHHH----HHhccC--CCcC-C---HHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 335689999999999999654210 000000 0000 0 00000000000124568999999998 56799999
Q ss_pred ecCCcHhHHHHHHhhhCCCCcc-cceeEEeecC--CCCC--ccccccc--c-CCCCCcEEEEcCChhhhh
Q 041302 237 YTMGDRPYALEMAKLLDPSREY-FNARVISRDD--GTQR--HQKGLDV--V-LGQESAVLILDDTENAWT 298 (484)
Q Consensus 237 yT~g~r~YA~~I~~~LDP~~~~-F~~RI~sRd~--c~~~--~~KdL~~--l-~~~~~~vVIIDD~~~vw~ 298 (484)
.|.=+........+.|--.|-- + .+++=|.. .... ..|.-.+ + ..+-+.+..|+|...-+.
T Consensus 142 lTGR~e~~r~~T~~nL~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~ 210 (229)
T TIGR01675 142 LSGRWEELRNATLDNLINAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLL 210 (229)
T ss_pred EcCCChHHHHHHHHHHHHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhc
Confidence 9998887766666666544511 2 34555652 1110 1133221 2 235678888999855443
No 165
>PLN02887 hydrolase family protein
Probab=69.99 E-value=8.7 Score=43.13 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=22.1
Q ss_pred HHHhhhhhhhhhcCccEEEEcCCCceeeec
Q 041302 149 RLRNTDMKHLLRHRKLYLILDLDHTLLNST 178 (484)
Q Consensus 149 ~~~~~~~~~ll~~rKL~LVLDLDeTLIhs~ 178 (484)
-.++....|.++.+...+++||||||++..
T Consensus 294 ~~~~~~~~~~~~~~iKLIa~DLDGTLLn~d 323 (580)
T PLN02887 294 DRKKEGSLRFYKPKFSYIFCDMDGTLLNSK 323 (580)
T ss_pred chhhhcchhhhccCccEEEEeCCCCCCCCC
Confidence 344445556677777889999999999764
No 166
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=69.20 E-value=8.9 Score=35.69 Aligned_cols=78 Identities=22% Similarity=0.172 Sum_probs=55.4
Q ss_pred eEEEEecccHHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCCCcccc----ccccCCCCCc
Q 041302 212 NMMTKLRPFVHTFLKEASEM-FEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQRHQKG----LDVVLGQESA 286 (484)
Q Consensus 212 ~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~~~Kd----L~~l~~~~~~ 286 (484)
...-.+||++.++|++|.+. +.++|.|..++..|..+++.+.-... .++++.. .++..|. ++.+.-....
T Consensus 123 ~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~----~v~a~~~-~kP~~k~~~~~i~~l~~~~~~ 197 (215)
T PF00702_consen 123 GLRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDS----IVFARVI-GKPEPKIFLRIIKELQVKPGE 197 (215)
T ss_dssp EEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSE----EEEESHE-TTTHHHHHHHHHHHHTCTGGG
T ss_pred eecCcchhhhhhhhhhhhccCcceeeeeccccccccccccccccccc----ccccccc-ccccchhHHHHHHHHhcCCCE
Confidence 34567899999999999887 89999999999999999999887432 2333221 2233342 2223335558
Q ss_pred EEEEcCCh
Q 041302 287 VLILDDTE 294 (484)
Q Consensus 287 vVIIDD~~ 294 (484)
|++|-|..
T Consensus 198 v~~vGDg~ 205 (215)
T PF00702_consen 198 VAMVGDGV 205 (215)
T ss_dssp EEEEESSG
T ss_pred EEEEccCH
Confidence 99999975
No 167
>PLN02423 phosphomannomutase
Probab=68.01 E-value=6.8 Score=38.71 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=13.7
Q ss_pred CccEEEEcCCCceeeecc
Q 041302 162 RKLYLILDLDHTLLNSTL 179 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~~ 179 (484)
.|+.+++||||||++...
T Consensus 6 ~~~i~~~D~DGTLl~~~~ 23 (245)
T PLN02423 6 PGVIALFDVDGTLTAPRK 23 (245)
T ss_pred cceEEEEeccCCCcCCCC
Confidence 355666999999997653
No 168
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=67.75 E-value=8.8 Score=37.62 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=12.7
Q ss_pred ccEEEEcCCCceeee
Q 041302 163 KLYLILDLDHTLLNS 177 (484)
Q Consensus 163 KL~LVLDLDeTLIhs 177 (484)
++.++.|||+||+..
T Consensus 1 ~~li~tDlDGTLl~~ 15 (249)
T TIGR01485 1 RLLLVSDLDNTLVDH 15 (249)
T ss_pred CeEEEEcCCCcCcCC
Confidence 468899999999964
No 169
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=67.59 E-value=7.2 Score=38.21 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=21.8
Q ss_pred ccHHHHHHHhhhC-CeEEEecCCc----HhHHHHHHh
Q 041302 219 PFVHTFLKEASEM-FEMYIYTMGD----RPYALEMAK 250 (484)
Q Consensus 219 Pgl~eFL~~ls~~-yEl~IyT~g~----r~YA~~I~~ 250 (484)
|++.++|+.+.+. +.+.+-||++ ..|+..+.+
T Consensus 17 ~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~ 53 (236)
T TIGR01460 17 PGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSS 53 (236)
T ss_pred cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4667888888654 8888888666 445555555
No 170
>PRK10976 putative hydrolase; Provisional
Probab=66.29 E-value=13 Score=36.44 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=13.3
Q ss_pred cEEEEcCCCceeeecc
Q 041302 164 LYLILDLDHTLLNSTL 179 (484)
Q Consensus 164 L~LVLDLDeTLIhs~~ 179 (484)
..+++||||||++...
T Consensus 3 kli~~DlDGTLl~~~~ 18 (266)
T PRK10976 3 QVVASDLDGTLLSPDH 18 (266)
T ss_pred eEEEEeCCCCCcCCCC
Confidence 4789999999997653
No 171
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=65.18 E-value=12 Score=38.02 Aligned_cols=67 Identities=16% Similarity=0.060 Sum_probs=50.9
Q ss_pred hhhhhhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCC
Q 041302 153 TDMKHLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMF 232 (484)
Q Consensus 153 ~~~~~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~y 232 (484)
.......+.+|..++||.|+||.+-...+. -...=|++.+.|..|+..+
T Consensus 8 ~~~~~~~~a~~~~~~lDyDGTl~~i~~~p~-------------------------------~a~~~~~l~~lL~~Las~~ 56 (266)
T COG1877 8 QLLEPYLNARKRLLFLDYDGTLTEIVPHPE-------------------------------AAVPDDRLLSLLQDLASDP 56 (266)
T ss_pred hhccccccccceEEEEeccccccccccCcc-------------------------------ccCCCHHHHHHHHHHHhcC
Confidence 345567888999999999999998876331 1234467889999999999
Q ss_pred e--EEEecCCcHhHHHHHHh
Q 041302 233 E--MYIYTMGDRPYALEMAK 250 (484)
Q Consensus 233 E--l~IyT~g~r~YA~~I~~ 250 (484)
. ++|.|--+..-.+..+.
T Consensus 57 ~~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 57 RNVVAIISGRSLAELERLFG 76 (266)
T ss_pred CCeEEEEeCCCHHHHHHhcC
Confidence 9 77877777776666655
No 172
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=62.53 E-value=20 Score=33.67 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=38.9
Q ss_pred hCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCCCccccccccCCCCCcEEEEcCChh
Q 041302 230 EMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQRHQKGLDVVLGQESAVLILDDTEN 295 (484)
Q Consensus 230 ~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~~~KdL~~l~~~~~~vVIIDD~~~ 295 (484)
..+.+.|.|++...++..+++.+.-. .+|.. + . .-+..+..-++++.-..+.++.|.|+..
T Consensus 49 ~Gi~laIiT~k~~~~~~~~l~~lgi~-~~f~~-~--k-pkp~~~~~~~~~l~~~~~ev~~iGD~~n 109 (169)
T TIGR02726 49 CGIDVAIITSKKSGAVRHRAEELKIK-RFHEG-I--K-KKTEPYAQMLEEMNISDAEVCYVGDDLV 109 (169)
T ss_pred CCCEEEEEECCCcHHHHHHHHHCCCc-EEEec-C--C-CCHHHHHHHHHHcCcCHHHEEEECCCHH
Confidence 56999999999999999999998765 35632 1 1 0000111222233335577899998764
No 173
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=61.11 E-value=4.4 Score=38.11 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=13.2
Q ss_pred EEEEcCCCceeeecc
Q 041302 165 YLILDLDHTLLNSTL 179 (484)
Q Consensus 165 ~LVLDLDeTLIhs~~ 179 (484)
.+++||||||+.|..
T Consensus 2 ~viFD~DGTLiDs~~ 16 (197)
T TIGR01548 2 ALVLDMDGVMADVSQ 16 (197)
T ss_pred ceEEecCceEEechH
Confidence 479999999999975
No 174
>PTZ00174 phosphomannomutase; Provisional
Probab=59.75 E-value=19 Score=35.44 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=14.8
Q ss_pred CccEEEEcCCCceeeecc
Q 041302 162 RKLYLILDLDHTLLNSTL 179 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~~ 179 (484)
....+++||||||+++..
T Consensus 4 ~~klia~DlDGTLL~~~~ 21 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRN 21 (247)
T ss_pred CCeEEEEECcCCCcCCCC
Confidence 356789999999998765
No 175
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=59.60 E-value=5 Score=37.02 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=28.5
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeC
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVD 446 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~ 446 (484)
+|....+...++.+|.. -.+.|.......=++.|.+.|++.|-
T Consensus 142 KP~p~~~~~~~~~~~~~--------~~~~l~igDs~~di~aA~~aG~~~i~ 184 (188)
T PRK10725 142 KPAPDTFLRCAQLMGVQ--------PTQCVVFEDADFGIQAARAAGMDAVD 184 (188)
T ss_pred CCChHHHHHHHHHcCCC--------HHHeEEEeccHhhHHHHHHCCCEEEe
Confidence 67777888888888752 23344444445667778888887664
No 176
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=57.08 E-value=5.3 Score=36.98 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=25.3
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeee
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLV 445 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV 445 (484)
+|....+...++.+|.. +.-+ ++..+ ...-+..|++.|++.|
T Consensus 141 KP~p~~~~~~~~~~~~~------~~~~-l~vgD-~~~di~aA~~~G~~~i 182 (184)
T TIGR01993 141 KPSPQAYEKALREAGVD------PERA-IFFDD-SARNIAAAKALGMKTV 182 (184)
T ss_pred CCCHHHHHHHHHHhCCC------ccce-EEEeC-CHHHHHHHHHcCCEEe
Confidence 56666777777787742 2222 33333 3345777888888765
No 177
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=56.14 E-value=20 Score=34.65 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=33.1
Q ss_pred EEecccHHHHHH-Hhh-hCCeEEEecCCcHhHHHHHHhh
Q 041302 215 TKLRPFVHTFLK-EAS-EMFEMYIYTMGDRPYALEMAKL 251 (484)
Q Consensus 215 vklRPgl~eFL~-~ls-~~yEl~IyT~g~r~YA~~I~~~ 251 (484)
++++||+.+.|+ .+. +-+.|+|-|++.+.|+.++++.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence 467999999996 776 5899999999999999999976
No 178
>PRK11587 putative phosphatase; Provisional
Probab=55.91 E-value=6.1 Score=37.80 Aligned_cols=46 Identities=17% Similarity=0.108 Sum_probs=29.1
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhh
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRW 449 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~W 449 (484)
+|....+...++.+|.. +. ..++..+. ..-+..|.+.|++.|...|
T Consensus 138 KP~p~~~~~~~~~~g~~------p~-~~l~igDs-~~di~aA~~aG~~~i~v~~ 183 (218)
T PRK11587 138 KPEPDAYLLGAQLLGLA------PQ-ECVVVEDA-PAGVLSGLAAGCHVIAVNA 183 (218)
T ss_pred CCCcHHHHHHHHHcCCC------cc-cEEEEecc-hhhhHHHHHCCCEEEEECC
Confidence 56777777778888742 22 23333333 3456778888988776666
No 179
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=55.33 E-value=23 Score=39.45 Aligned_cols=73 Identities=22% Similarity=0.185 Sum_probs=50.2
Q ss_pred EEEecccHHHHHHHhhh-CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCCCccccccccCCCCCcEEEEcC
Q 041302 214 MTKLRPFVHTFLKEASE-MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQRHQKGLDVVLGQESAVLILDD 292 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~~~KdL~~l~~~~~~vVIIDD 292 (484)
.-.+||++.++|+++.+ .+.++|-|.+.+.+|+.+++.+.-+ +|.. +. .+ .....++.| ....+.+++|.|
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~--~~~~-~~-p~-~K~~~v~~l---~~~~~~v~~VGD 474 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN--VRAE-VL-PD-DKAALIKEL---QEKGRVVAMVGD 474 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc--EEcc-CC-hH-HHHHHHHHH---HHcCCEEEEEeC
Confidence 45689999999999976 4999999999999999999987653 4432 11 00 000112222 234567999988
Q ss_pred Ch
Q 041302 293 TE 294 (484)
Q Consensus 293 ~~ 294 (484)
..
T Consensus 475 g~ 476 (562)
T TIGR01511 475 GI 476 (562)
T ss_pred CC
Confidence 64
No 180
>PRK11590 hypothetical protein; Provisional
Probab=55.24 E-value=16 Score=34.96 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=34.2
Q ss_pred EEecccHHHHH-HHhh-hCCeEEEecCCcHhHHHHHHhhhC
Q 041302 215 TKLRPFVHTFL-KEAS-EMFEMYIYTMGDRPYALEMAKLLD 253 (484)
Q Consensus 215 vklRPgl~eFL-~~ls-~~yEl~IyT~g~r~YA~~I~~~LD 253 (484)
+.++||+.+.| +.+. ..+.+.|-|++.+.|+.++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 56799999999 5676 589999999999999999998765
No 181
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=55.12 E-value=12 Score=36.93 Aligned_cols=128 Identities=13% Similarity=0.036 Sum_probs=63.0
Q ss_pred cCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhC-CeEEEecC
Q 041302 161 HRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEM-FEMYIYTM 239 (484)
Q Consensus 161 ~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~ 239 (484)
.+++.+|||+|+||+..... ..........-+..+. ..+...+.. ..=||..+|++.+.+. ++|++-|.
T Consensus 70 ~~~~avv~DIDeTvLsn~~y----~~~~~~~~~~~~~~~w---~~wv~~~~~---~aip~a~~l~~~~~~~G~~V~~iT~ 139 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPY----YAYLIFGGESFSPEDW---DEWVASGKA---PAIPGALELYNYARSRGVKVFFITG 139 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHH----HHHHHHHTHHH-CCHH---HHHHHCTGG---EEETTHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCcEEEEECCcccccCHHH----HHHHhhccCCCChHHH---HHHHhcccC---cccHHHHHHHHHHHHCCCeEEEEec
Confidence 68999999999999944321 0000000000000000 000001111 4558899999999665 99999998
Q ss_pred CcHhHHHHHHhhhCCCCcccceeEEeecCCC-C----Cccccccc--cC-CCCCcEEEEcCChhhhh
Q 041302 240 GDRPYALEMAKLLDPSREYFNARVISRDDGT-Q----RHQKGLDV--VL-GQESAVLILDDTENAWT 298 (484)
Q Consensus 240 g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~-~----~~~KdL~~--l~-~~~~~vVIIDD~~~vw~ 298 (484)
=....-..-++-|--.|--.-+.++-|.... . ...|.=.+ |- .+-+.+..|.|+..-+.
T Consensus 140 R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~Ii~~iGD~~~D~~ 206 (229)
T PF03767_consen 140 RPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYRIIANIGDQLSDFS 206 (229)
T ss_dssp EETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTEEEEEEEESSGGGCH
T ss_pred CCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcCCcEEEEeCCCHHHhh
Confidence 7766545555544433311112233243322 1 12233222 21 23467888888766554
No 182
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=53.95 E-value=26 Score=33.91 Aligned_cols=52 Identities=13% Similarity=0.260 Sum_probs=39.4
Q ss_pred EEecccHHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhhCCCCcccceeEEee
Q 041302 215 TKLRPFVHTFLKEASEM-FEMYIYTMGDRPYALEMAKLLDPSREYFNARVISR 266 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sR 266 (484)
+++|||.++|.+.+.+. --++|-++|...|..++...|=-...+-..-|+|.
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn 124 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSN 124 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeec
Confidence 88999999999999765 67999999999999999976543322333334433
No 183
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=53.31 E-value=88 Score=31.93 Aligned_cols=82 Identities=12% Similarity=-0.016 Sum_probs=49.9
Q ss_pred ecccHHHHHHHhh-hCCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCCC-----ccccc--cc-cCCCCCcE
Q 041302 217 LRPFVHTFLKEAS-EMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQR-----HQKGL--DV-VLGQESAV 287 (484)
Q Consensus 217 lRPgl~eFL~~ls-~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~-----~~KdL--~~-l~~~~~~v 287 (484)
-=|+..+|++.+. .-+.|++-|.-....-..-++-|--.|--.-.+++=|+..... ..|.- .. +..+-+.+
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv 225 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIV 225 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCceEE
Confidence 3478999999994 6799999998887665555666655552111345557543211 12221 11 22456788
Q ss_pred EEEcCChhhhh
Q 041302 288 LILDDTENAWT 298 (484)
Q Consensus 288 VIIDD~~~vw~ 298 (484)
..|||+..-+.
T Consensus 226 ~~iGDq~sDl~ 236 (275)
T TIGR01680 226 GIIGDQWNDLK 236 (275)
T ss_pred EEECCCHHhcc
Confidence 99999865554
No 184
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=52.41 E-value=7.3 Score=37.01 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=29.4
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhhHH
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWIE 451 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~WL~ 451 (484)
+|....+.+.+..+|.. +. .-++..+. ..=+..|.+.|++.|...|-.
T Consensus 138 Kp~p~~~~~~~~~~~~~------~~-~~~~iGDs-~~Di~aa~~aG~~~i~v~~g~ 185 (214)
T PRK13288 138 KPDPEPVLKALELLGAK------PE-EALMVGDN-HHDILAGKNAGTKTAGVAWTI 185 (214)
T ss_pred CCCcHHHHHHHHHcCCC------HH-HEEEECCC-HHHHHHHHHCCCeEEEEcCCC
Confidence 45666777777777632 22 22333333 356677788899888777753
No 185
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=52.36 E-value=7.3 Score=36.96 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.9
Q ss_pred cEEEEcCCCceeeecc
Q 041302 164 LYLILDLDHTLLNSTL 179 (484)
Q Consensus 164 L~LVLDLDeTLIhs~~ 179 (484)
..+++||||||+.+..
T Consensus 3 ~~viFDlDGTL~ds~~ 18 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSG 18 (221)
T ss_pred eEEEEeCCCCCcCCCC
Confidence 4789999999999875
No 186
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=51.56 E-value=19 Score=37.33 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=36.4
Q ss_pred EEecccHHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhhCCC
Q 041302 215 TKLRPFVHTFLKEASEM-FEMYIYTMGDRPYALEMAKLLDPS 255 (484)
Q Consensus 215 vklRPgl~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~LDP~ 255 (484)
+.++||+.+||+.+.+. |.+.|.|.|...+++.+.+.++-.
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld 221 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLD 221 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCC
Confidence 67899999999999754 999999999999999999877654
No 187
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=51.10 E-value=28 Score=39.80 Aligned_cols=39 Identities=23% Similarity=0.116 Sum_probs=23.9
Q ss_pred ecCCcccCHHHHHHHHhhhhhhhhhcCccEEEEcCCCceeeecc
Q 041302 136 ICKGLRLGNDEIDRLRNTDMKHLLRHRKLYLILDLDHTLLNSTL 179 (484)
Q Consensus 136 ~~~~l~vs~~ea~~~~~~~~~~ll~~rKL~LVLDLDeTLIhs~~ 179 (484)
+-+|+.++.+....-. .-=..++..++.|||+||++...
T Consensus 394 ~~~~~~~~~~~~~~~~-----~~~~~~~KLIfsDLDGTLLd~d~ 432 (694)
T PRK14502 394 LPDGELISRAARPSRL-----PSSGQFKKIVYTDLDGTLLNPLT 432 (694)
T ss_pred CCCCCccchhhhcccC-----CCcCceeeEEEEECcCCCcCCCC
Confidence 3467777765332111 11234567899999999998643
No 188
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=50.75 E-value=9.2 Score=35.85 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=13.1
Q ss_pred EEEEcCCCceeeecc
Q 041302 165 YLILDLDHTLLNSTL 179 (484)
Q Consensus 165 ~LVLDLDeTLIhs~~ 179 (484)
.+++||||||+.+..
T Consensus 2 ~viFDlDGTL~d~~~ 16 (203)
T TIGR02252 2 LITFDAVGTLLALKE 16 (203)
T ss_pred eEEEecCCceeeeCC
Confidence 689999999999864
No 189
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=50.54 E-value=26 Score=40.26 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=44.2
Q ss_pred hhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhh--CCeE
Q 041302 157 HLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASE--MFEM 234 (484)
Q Consensus 157 ~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~--~yEl 234 (484)
++...++..|++|+||||+.....+ . ....-|.+.+.|+.|++ ...+
T Consensus 486 ~y~~~~~rLi~~D~DGTL~~~~~~~--~-----------------------------~~~~~~~~~~~L~~L~~d~g~~V 534 (726)
T PRK14501 486 RYRAASRRLLLLDYDGTLVPFAPDP--E-----------------------------LAVPDKELRDLLRRLAADPNTDV 534 (726)
T ss_pred HHHhccceEEEEecCccccCCCCCc--c-----------------------------cCCCCHHHHHHHHHHHcCCCCeE
Confidence 3445678899999999999543211 0 01234678899999987 6788
Q ss_pred EEecCCcHhHHHHHHhh
Q 041302 235 YIYTMGDRPYALEMAKL 251 (484)
Q Consensus 235 ~IyT~g~r~YA~~I~~~ 251 (484)
+|-|--++.........
T Consensus 535 ~ivSGR~~~~l~~~~~~ 551 (726)
T PRK14501 535 AIISGRDRDTLERWFGD 551 (726)
T ss_pred EEEeCCCHHHHHHHhCC
Confidence 88888887766665543
No 190
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=50.31 E-value=8.2 Score=38.68 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.7
Q ss_pred ccEEEEcCCCceeeecc
Q 041302 163 KLYLILDLDHTLLNSTL 179 (484)
Q Consensus 163 KL~LVLDLDeTLIhs~~ 179 (484)
...+++|||+||+++..
T Consensus 13 ~k~viFDlDGTL~Ds~~ 29 (272)
T PRK13223 13 PRLVMFDLDGTLVDSVP 29 (272)
T ss_pred CCEEEEcCCCccccCHH
Confidence 34899999999999865
No 191
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=50.29 E-value=7 Score=34.87 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=12.9
Q ss_pred EEEEcCCCceeeecc
Q 041302 165 YLILDLDHTLLNSTL 179 (484)
Q Consensus 165 ~LVLDLDeTLIhs~~ 179 (484)
++++|+|+||+.+..
T Consensus 1 ~iifD~DGTL~d~~~ 15 (154)
T TIGR01549 1 AILFDIDGTLVDSSF 15 (154)
T ss_pred CeEecCCCcccccHH
Confidence 479999999999863
No 192
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=50.02 E-value=9.2 Score=36.33 Aligned_cols=47 Identities=11% Similarity=0.016 Sum_probs=26.6
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCee-eChhh
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFL-VDPRW 449 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~I-V~~~W 449 (484)
+|....+...++.+|.. +.-..++..+. ..=++.|++.|++. |-..|
T Consensus 145 KP~p~~~~~a~~~~~~~------~~~~~~~igD~-~~Di~aa~~aG~~~~i~~~~ 192 (220)
T TIGR03351 145 RPAPDLILRAMELTGVQ------DVQSVAVAGDT-PNDLEAGINAGAGAVVGVLT 192 (220)
T ss_pred CCCHHHHHHHHHHcCCC------ChhHeEEeCCC-HHHHHHHHHCCCCeEEEEec
Confidence 56666777777777653 11223344433 34566677778776 54444
No 193
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=49.82 E-value=11 Score=37.76 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=16.3
Q ss_pred hhcCccEEEEcCCCceeeec
Q 041302 159 LRHRKLYLILDLDHTLLNST 178 (484)
Q Consensus 159 l~~rKL~LVLDLDeTLIhs~ 178 (484)
|......+++||||||+.|.
T Consensus 20 ~~~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 20 LGCGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred hcCCceEEEEeCCCceeCCc
Confidence 44455679999999999985
No 194
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=49.63 E-value=36 Score=35.15 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.5
Q ss_pred cEEEEcCCCceeeec
Q 041302 164 LYLILDLDHTLLNST 178 (484)
Q Consensus 164 L~LVLDLDeTLIhs~ 178 (484)
..+++|||+||+...
T Consensus 2 KLIftDLDGTLLd~~ 16 (302)
T PRK12702 2 RLVLSSLDGSLLDLE 16 (302)
T ss_pred cEEEEeCCCCCcCCC
Confidence 478999999999754
No 195
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=48.72 E-value=8.6 Score=35.21 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=13.8
Q ss_pred cEEEEcCCCceeeecc
Q 041302 164 LYLILDLDHTLLNSTL 179 (484)
Q Consensus 164 L~LVLDLDeTLIhs~~ 179 (484)
..+++|+||||+.+..
T Consensus 2 ~~iiFD~DGTL~ds~~ 17 (185)
T TIGR02009 2 KAVIFDMDGVIVDTAP 17 (185)
T ss_pred CeEEEcCCCcccCChH
Confidence 3689999999999874
No 196
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=48.71 E-value=9.4 Score=36.98 Aligned_cols=48 Identities=21% Similarity=0.149 Sum_probs=29.7
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhhHH
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWIE 451 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~WL~ 451 (484)
+|....+...++.+|.. + .+.|.......-+..|++.|++.|-..|-.
T Consensus 151 KP~p~~~~~~~~~l~~~------p--~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~ 198 (229)
T PRK13226 151 KPHPLPLLVAAERIGVA------P--TDCVYVGDDERDILAARAAGMPSVAALWGY 198 (229)
T ss_pred CCCHHHHHHHHHHhCCC------h--hhEEEeCCCHHHHHHHHHCCCcEEEEeecC
Confidence 56777778888888742 2 223333333455667777888877766654
No 197
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=47.14 E-value=7.4 Score=36.69 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=28.5
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhhHH
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWIE 451 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~WL~ 451 (484)
+|....+.+.++.+|..- .- -++..+ ...-+..|.+.|++.|-..|-.
T Consensus 131 KP~~~~~~~~~~~~~~~~------~~-~l~igD-~~~Di~aA~~~Gi~~i~~~~g~ 178 (205)
T TIGR01454 131 KPAPDIVREALRLLDVPP------ED-AVMVGD-AVTDLASARAAGTATVAALWGE 178 (205)
T ss_pred CCChHHHHHHHHHcCCCh------hh-eEEEcC-CHHHHHHHHHcCCeEEEEEecC
Confidence 556666777777766331 11 133333 3355667778888887777765
No 198
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=47.00 E-value=11 Score=35.89 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=14.4
Q ss_pred CccEEEEcCCCceeeec
Q 041302 162 RKLYLILDLDHTLLNST 178 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~ 178 (484)
++..+++|+||||+++.
T Consensus 13 ~~k~iiFD~DGTL~~~~ 29 (219)
T TIGR00338 13 SKKLVVFDMDSTLINAE 29 (219)
T ss_pred cCCEEEEeCcccCCCch
Confidence 35689999999999874
No 199
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=46.67 E-value=9 Score=35.10 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=13.0
Q ss_pred EEEEcCCCceeeecc
Q 041302 165 YLILDLDHTLLNSTL 179 (484)
Q Consensus 165 ~LVLDLDeTLIhs~~ 179 (484)
.+++|+|+||+.+..
T Consensus 1 ~iiFD~DGTL~ds~~ 15 (185)
T TIGR01990 1 AVIFDLDGVITDTAE 15 (185)
T ss_pred CeEEcCCCccccChH
Confidence 379999999998875
No 200
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=46.45 E-value=9.9 Score=37.40 Aligned_cols=46 Identities=11% Similarity=-0.038 Sum_probs=30.1
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhh
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRW 449 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~W 449 (484)
+|....+.+.++.+|. ++.-+ |.......-++.|++.|++.|...|
T Consensus 164 KP~p~~~~~a~~~~~~------~~~~~--l~vgDs~~Di~aA~~aGi~~i~v~~ 209 (248)
T PLN02770 164 KPHPDPYLKALEVLKV------SKDHT--FVFEDSVSGIKAGVAAGMPVVGLTT 209 (248)
T ss_pred CCChHHHHHHHHHhCC------ChhHE--EEEcCCHHHHHHHHHCCCEEEEEeC
Confidence 6777788888888875 22223 2233334566778888998887776
No 201
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=46.43 E-value=8.9 Score=34.84 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=24.3
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeee
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLV 445 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV 445 (484)
+|....+...++.+|. ++. ++|.......-+..|++.|++.|
T Consensus 140 KP~~~~~~~~~~~~~~------~~~--~~~~vgD~~~di~aA~~~G~~~i 181 (183)
T TIGR01509 140 KPDPDIYLLALKKLGL------KPE--ECLFVDDSPAGIEAAKAAGMHTV 181 (183)
T ss_pred CCCHHHHHHHHHHcCC------Ccc--eEEEEcCCHHHHHHHHHcCCEEE
Confidence 5666677777777763 222 22222233345677777888765
No 202
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=45.96 E-value=11 Score=37.31 Aligned_cols=49 Identities=14% Similarity=-0.010 Sum_probs=28.5
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhhHH
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWIE 451 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~WL~ 451 (484)
+|....+...++.+|.. +.-+-++..+ ...=++.|++.|++.|...|-.
T Consensus 158 KP~p~~~~~a~~~l~~~------~~~e~l~IGD-s~~Di~aA~~aG~~~i~v~~g~ 206 (267)
T PRK13478 158 RPYPWMALKNAIELGVY------DVAACVKVDD-TVPGIEEGLNAGMWTVGVILSG 206 (267)
T ss_pred CCChHHHHHHHHHcCCC------CCcceEEEcC-cHHHHHHHHHCCCEEEEEccCc
Confidence 56667777778887742 1111233333 3345667777788777766644
No 203
>PRK11590 hypothetical protein; Provisional
Probab=45.84 E-value=11 Score=36.11 Aligned_cols=14 Identities=36% Similarity=0.505 Sum_probs=12.2
Q ss_pred CccEEEEcCCCcee
Q 041302 162 RKLYLILDLDHTLL 175 (484)
Q Consensus 162 rKL~LVLDLDeTLI 175 (484)
.+..+++|||+||+
T Consensus 5 ~~k~~iFD~DGTL~ 18 (211)
T PRK11590 5 ERRVVFFDLDGTLH 18 (211)
T ss_pred cceEEEEecCCCCc
Confidence 45589999999999
No 204
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=45.40 E-value=10 Score=33.63 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=12.2
Q ss_pred EEEcCCCceeeecc
Q 041302 166 LILDLDHTLLNSTL 179 (484)
Q Consensus 166 LVLDLDeTLIhs~~ 179 (484)
+++|+|+||+++..
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 68999999998764
No 205
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=45.39 E-value=12 Score=36.19 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=27.9
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhhHH
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWIE 451 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~WL~ 451 (484)
+|....+...++.+|.. . -++|.......-...|++.|+..|-..|-.
T Consensus 145 KP~P~~l~~~~~~~~~~-~-------~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~ 192 (220)
T COG0546 145 KPDPEPLLLLLEKLGLD-P-------EEALMVGDSLNDILAAKAAGVPAVGVTWGY 192 (220)
T ss_pred CcCHHHHHHHHHHhCCC-h-------hheEEECCCHHHHHHHHHcCCCEEEEECCC
Confidence 45666777777777766 2 223333333445556666677766666643
No 206
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=44.79 E-value=41 Score=34.90 Aligned_cols=53 Identities=21% Similarity=0.316 Sum_probs=38.5
Q ss_pred chhHHHHhhhhcccccceeeeeeeccCCCCCcc-hHHHHHHHHHhCCeEeeecC
Q 041302 366 RDVRQVLKMVRGEVLKGCKLVFSHVFPTKFPAD-THYLWKMAEQLGATCSIELD 418 (484)
Q Consensus 366 ~DVr~IL~~lr~~vL~G~~IvfSG~~p~~~~~~-~~~l~~la~~lGA~v~~~i~ 418 (484)
.+++.++..+++.+-++-.+++||.+|.+..+. -..+.+.+.+.|+.+.-|.+
T Consensus 114 ~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~S 167 (310)
T COG1105 114 AELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTS 167 (310)
T ss_pred HHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECC
Confidence 355566666666666667799999999987433 24566778888999888765
No 207
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=44.71 E-value=12 Score=34.32 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.6
Q ss_pred ccEEEEcCCCceeeecc
Q 041302 163 KLYLILDLDHTLLNSTL 179 (484)
Q Consensus 163 KL~LVLDLDeTLIhs~~ 179 (484)
|..+|+|+|+||+....
T Consensus 1 ~~~iiFD~dgTL~~~~~ 17 (188)
T TIGR01489 1 KVVVVSDFDGTITLNDS 17 (188)
T ss_pred CeEEEEeCCCcccCCCc
Confidence 67899999999997754
No 208
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=44.35 E-value=19 Score=32.94 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=36.4
Q ss_pred ecccHH----HHHHHh-hhCCeEEEecCCcHhHHHHHHhhhCCCC-cccceeE
Q 041302 217 LRPFVH----TFLKEA-SEMFEMYIYTMGDRPYALEMAKLLDPSR-EYFNARV 263 (484)
Q Consensus 217 lRPgl~----eFL~~l-s~~yEl~IyT~g~r~YA~~I~~~LDP~~-~~F~~RI 263 (484)
++|++. +||+.+ ...+.++|-|.|.+.|+..+++.+.-.. .++++++
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 456666 999998 6789999999999999999998766443 2345544
No 209
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=44.34 E-value=61 Score=32.30 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=23.6
Q ss_pred hhCCeEEEecCCcHhHHHHHHhhhCCCCccc
Q 041302 229 SEMFEMYIYTMGDRPYALEMAKLLDPSREYF 259 (484)
Q Consensus 229 s~~yEl~IyT~g~r~YA~~I~~~LDP~~~~F 259 (484)
-.-|+|+.+|.-++.=-....+-|+-.+..|
T Consensus 37 d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p~ 67 (274)
T COG3769 37 DAGVPVILCSSKTRAEMLYLQKSLGVQGLPL 67 (274)
T ss_pred HcCCeEEEeccchHHHHHHHHHhcCCCCCce
Confidence 4569999999888877777778888776443
No 210
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=43.85 E-value=9.1 Score=35.99 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=28.2
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhh
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRW 449 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~W 449 (484)
+|....+.+.++.+|.. +. +.+.......=+..|.+.|++.|...|
T Consensus 141 Kp~p~~~~~~~~~~~~~------~~--~~~~igDs~~d~~aa~~aG~~~i~v~~ 186 (213)
T TIGR01449 141 KPHPDPLLLAAERLGVA------PQ--QMVYVGDSRVDIQAARAAGCPSVLLTY 186 (213)
T ss_pred CCChHHHHHHHHHcCCC------hh--HeEEeCCCHHHHHHHHHCCCeEEEEcc
Confidence 56667788888888752 22 222222234456667778988876665
No 211
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=43.48 E-value=14 Score=36.22 Aligned_cols=49 Identities=16% Similarity=0.061 Sum_probs=28.4
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhhHH
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWIE 451 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~WL~ 451 (484)
+|....+...++.+|.. ++. .-++..+. ..=++.|++.|++.|-..|-.
T Consensus 156 KP~p~~~~~a~~~l~~~-----~~~-~~l~IGDs-~~Di~aA~~aGi~~i~v~~g~ 204 (253)
T TIGR01422 156 RPAPWMALKNAIELGVY-----DVA-ACVKVGDT-VPDIEEGRNAGMWTVGLILSS 204 (253)
T ss_pred CCCHHHHHHHHHHcCCC-----Cch-heEEECCc-HHHHHHHHHCCCeEEEEecCC
Confidence 56677777777887742 111 12233322 355566777788877766653
No 212
>PLN02382 probable sucrose-phosphatase
Probab=43.10 E-value=12 Score=40.25 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=18.4
Q ss_pred hhhhhcCccEEEEcCCCceeee
Q 041302 156 KHLLRHRKLYLILDLDHTLLNS 177 (484)
Q Consensus 156 ~~ll~~rKL~LVLDLDeTLIhs 177 (484)
.+|-...++.|+.||||||+..
T Consensus 2 ~~~~~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 2 DRLSGSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CcccCCCCEEEEEcCCCcCcCC
Confidence 3566778999999999999965
No 213
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=42.28 E-value=12 Score=35.42 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=13.7
Q ss_pred cEEEEcCCCceeeecc
Q 041302 164 LYLILDLDHTLLNSTL 179 (484)
Q Consensus 164 L~LVLDLDeTLIhs~~ 179 (484)
..+++|+|+||+++..
T Consensus 7 ~~iiFD~DGTL~d~~~ 22 (226)
T PRK13222 7 RAVAFDLDGTLVDSAP 22 (226)
T ss_pred cEEEEcCCcccccCHH
Confidence 4799999999998764
No 214
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=42.27 E-value=13 Score=36.25 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=13.8
Q ss_pred cEEEEcCCCceeeecc
Q 041302 164 LYLILDLDHTLLNSTL 179 (484)
Q Consensus 164 L~LVLDLDeTLIhs~~ 179 (484)
..+++|||+||+.+..
T Consensus 11 k~iiFDlDGTL~D~~~ 26 (238)
T PRK10748 11 SALTFDLDDTLYDNRP 26 (238)
T ss_pred eeEEEcCcccccCChH
Confidence 4799999999998864
No 215
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=41.91 E-value=13 Score=35.01 Aligned_cols=47 Identities=9% Similarity=-0.086 Sum_probs=29.6
Q ss_pred CcchHHHHHHHHHh-CCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhh
Q 041302 396 PADTHYLWKMAEQL-GATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRW 449 (484)
Q Consensus 396 ~~~~~~l~~la~~l-GA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~W 449 (484)
+|....+...++.+ |.. +. ..|+..+..+.-+..|++.|++.|...|
T Consensus 152 KP~~~~~~~~~~~~~~~~------~~-~~v~igD~~~~di~~A~~~G~~~i~~~~ 199 (224)
T TIGR02254 152 KPDKEIFNYALERMPKFS------KE-EVLMIGDSLTADIKGGQNAGLDTCWMNP 199 (224)
T ss_pred CCCHHHHHHHHHHhcCCC------ch-heEEECCCcHHHHHHHHHCCCcEEEECC
Confidence 56767777778887 533 11 2333333333567788889998777666
No 216
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=41.54 E-value=40 Score=37.30 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=55.0
Q ss_pred eEEEEecccHHHHHHHhhhC-C-eEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCCCccccccccCCCCCcEEE
Q 041302 212 NMMTKLRPFVHTFLKEASEM-F-EMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQRHQKGLDVVLGQESAVLI 289 (484)
Q Consensus 212 ~~~vklRPgl~eFL~~ls~~-y-El~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~~~KdL~~l~~~~~~vVI 289 (484)
.+...+|||+.+.|++|.+. + .++|.|+..+.+|..+++.+.-.. +|.. +. +....+-++.+......+++
T Consensus 358 ~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~-~f~~-~~-----p~~K~~~i~~l~~~~~~v~~ 430 (536)
T TIGR01512 358 LLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE-VHAE-LL-----PEDKLEIVKELREKYGPVAM 430 (536)
T ss_pred EEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh-hhhc-cC-----cHHHHHHHHHHHhcCCEEEE
Confidence 34567999999999999764 8 999999999999999999988754 5642 22 11112223333334578999
Q ss_pred EcCChh
Q 041302 290 LDDTEN 295 (484)
Q Consensus 290 IDD~~~ 295 (484)
|.|...
T Consensus 431 vGDg~n 436 (536)
T TIGR01512 431 VGDGIN 436 (536)
T ss_pred EeCCHH
Confidence 999754
No 217
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=41.43 E-value=12 Score=34.09 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=12.4
Q ss_pred EEEcCCCceeeecc
Q 041302 166 LILDLDHTLLNSTL 179 (484)
Q Consensus 166 LVLDLDeTLIhs~~ 179 (484)
+++||||||+.+..
T Consensus 2 viFD~DGTL~D~~~ 15 (175)
T TIGR01493 2 MVFDVYGTLVDVHG 15 (175)
T ss_pred eEEecCCcCcccHH
Confidence 79999999998774
No 218
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=41.37 E-value=36 Score=36.03 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=7.9
Q ss_pred CCcHhHHHHHHhhhC
Q 041302 239 MGDRPYALEMAKLLD 253 (484)
Q Consensus 239 ~g~r~YA~~I~~~LD 253 (484)
|+++..++.|-.+|-
T Consensus 450 MsSqeVVdFvr~~l~ 464 (542)
T KOG0699|consen 450 MSSQEVVDFVRDLLA 464 (542)
T ss_pred ccHHHHHHHHHHHHh
Confidence 455555555555544
No 219
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=41.27 E-value=15 Score=35.70 Aligned_cols=40 Identities=20% Similarity=0.072 Sum_probs=23.5
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCe
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKF 443 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~ 443 (484)
+|....+...++.+|.. +.-+ ++..+ ...-++.|.+.|++
T Consensus 149 KP~p~~~~~~~~~~~~~------p~~~-l~igD-s~~di~aA~~aG~~ 188 (224)
T PRK14988 149 KEDQRLWQAVAEHTGLK------AERT-LFIDD-SEPILDAAAQFGIR 188 (224)
T ss_pred CCCHHHHHHHHHHcCCC------hHHE-EEEcC-CHHHHHHHHHcCCe
Confidence 56666777777887742 2222 22333 33457778888886
No 220
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=41.13 E-value=13 Score=34.74 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=13.2
Q ss_pred EEEEcCCCceeeecc
Q 041302 165 YLILDLDHTLLNSTL 179 (484)
Q Consensus 165 ~LVLDLDeTLIhs~~ 179 (484)
.+++|+|+||+.+..
T Consensus 3 ~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 3 ALVFDVYGTLFDVHS 17 (198)
T ss_pred EEEEeCCCcCccHHH
Confidence 689999999998764
No 221
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=40.85 E-value=35 Score=37.86 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=53.0
Q ss_pred EEEEecccHHHHHHHhhh-C-CeEEEecCCcHhHHHHHHhhhCCCCcccceeEEeecCCCCCccccccccCCCCCcEEEE
Q 041302 213 MMTKLRPFVHTFLKEASE-M-FEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQRHQKGLDVVLGQESAVLIL 290 (484)
Q Consensus 213 ~~vklRPgl~eFL~~ls~-~-yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sRd~c~~~~~KdL~~l~~~~~~vVII 290 (484)
+...+|||+.+.|+++.+ . +.++|-|...+.+|..+++.++-+. +|. ++. .+ ...+-++.+......+++|
T Consensus 381 ~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~-~f~-~~~-p~----~K~~~v~~l~~~~~~v~~v 453 (556)
T TIGR01525 381 LRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE-VHA-ELL-PE----DKLAIVKELQEEGGVVAMV 453 (556)
T ss_pred ecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe-eec-cCC-HH----HHHHHHHHHHHcCCEEEEE
Confidence 446799999999999966 4 8999999999999999999988754 554 231 11 0111122222234588999
Q ss_pred cCChh
Q 041302 291 DDTEN 295 (484)
Q Consensus 291 DD~~~ 295 (484)
.|...
T Consensus 454 GDg~n 458 (556)
T TIGR01525 454 GDGIN 458 (556)
T ss_pred ECChh
Confidence 99653
No 222
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=39.74 E-value=16 Score=34.93 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=14.9
Q ss_pred CccEEEEcCCCceeeecc
Q 041302 162 RKLYLILDLDHTLLNSTL 179 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~~ 179 (484)
+-..+++|+||||+++..
T Consensus 6 ~~k~iiFD~DGTL~d~~~ 23 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEP 23 (222)
T ss_pred cCcEEEEcCCCCCCcCHH
Confidence 356889999999998864
No 223
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=39.39 E-value=17 Score=34.39 Aligned_cols=47 Identities=21% Similarity=0.100 Sum_probs=28.1
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhhH
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWI 450 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~WL 450 (484)
+|....+...++.+|.. +.-+ ++. .....-+..|.+.|++.|...+-
T Consensus 152 KP~p~~~~~~~~~~g~~------~~~~-l~i-~D~~~di~aA~~aG~~~i~v~~~ 198 (211)
T TIGR02247 152 KPDPRIYQLMLERLGVA------PEEC-VFL-DDLGSNLKPAAALGITTIKVSDE 198 (211)
T ss_pred CCCHHHHHHHHHHcCCC------HHHe-EEE-cCCHHHHHHHHHcCCEEEEECCH
Confidence 56777777777888732 2222 222 33344567778889887765553
No 224
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=38.63 E-value=16 Score=33.83 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=13.0
Q ss_pred cEEEEcCCCceeeec
Q 041302 164 LYLILDLDHTLLNST 178 (484)
Q Consensus 164 L~LVLDLDeTLIhs~ 178 (484)
..+|+|+|+||+.+.
T Consensus 5 k~viFD~DGTLid~~ 19 (201)
T TIGR01491 5 KLIIFDLDGTLTDVM 19 (201)
T ss_pred eEEEEeCCCCCcCCc
Confidence 469999999999865
No 225
>PRK09449 dUMP phosphatase; Provisional
Probab=38.42 E-value=15 Score=34.95 Aligned_cols=47 Identities=11% Similarity=-0.076 Sum_probs=30.0
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChh
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPR 448 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~ 448 (484)
+|....+...++.+|.. +.-..++..+....-+..|++.|++.|...
T Consensus 150 KP~p~~~~~~~~~~~~~------~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 150 KPDVAIFDYALEQMGNP------DRSRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred CCCHHHHHHHHHHcCCC------CcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 67777888888888742 122344444433346778888998877554
No 226
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=37.33 E-value=57 Score=32.39 Aligned_cols=51 Identities=10% Similarity=0.199 Sum_probs=41.8
Q ss_pred EEEecccHHHHHHHhhh---CCeEEEecCCcHhHHHHHHhhhCCCCcccceeEEee
Q 041302 214 MTKLRPFVHTFLKEASE---MFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISR 266 (484)
Q Consensus 214 ~vklRPgl~eFL~~ls~---~yEl~IyT~g~r~YA~~I~~~LDP~~~~F~~RI~sR 266 (484)
-+.+.||..+|++.+++ .|+++|-+.|..-|-+.|++.-+-.. +|. .|+|.
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~-~f~-~I~TN 122 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD-CFS-EIFTN 122 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc-ccc-eEEeC
Confidence 36789999999999953 89999999999999999998766654 564 47743
No 227
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=37.21 E-value=19 Score=36.36 Aligned_cols=48 Identities=21% Similarity=0.080 Sum_probs=30.5
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhhHH
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWIE 451 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~WL~ 451 (484)
+|....+...++.+|.. +. .-++.. ....-+..|.+.|+++|-..|-.
T Consensus 202 KP~p~~~~~a~~~~~~~------p~-~~l~IG-Ds~~Di~aA~~aG~~~i~v~~g~ 249 (286)
T PLN02779 202 KPDPDIYNLAAETLGVD------PS-RCVVVE-DSVIGLQAAKAAGMRCIVTKSSY 249 (286)
T ss_pred CCCHHHHHHHHHHhCcC------hH-HEEEEe-CCHHhHHHHHHcCCEEEEEccCC
Confidence 67777888888888753 22 222333 33356677788898887776643
No 228
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=37.13 E-value=52 Score=30.74 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=40.0
Q ss_pred EEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhC-CeEEEecCCcHh
Q 041302 165 YLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEM-FEMYIYTMGDRP 243 (484)
Q Consensus 165 ~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~r~ 243 (484)
++|.|+|+||--|-..-.+ +.+-+.. +.+||+.++.+.+.+. |.+.--|+-.-.
T Consensus 1 VVvsDIDGTiT~SD~~G~i----------------------~~~~G~d---~~h~g~~~l~~~i~~~GY~ilYlTaRp~~ 55 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHI----------------------LPILGKD---WTHPGAAELYRKIADNGYKILYLTARPIG 55 (157)
T ss_pred CEEEeccCCcCccchhhhh----------------------hhccCch---hhhhcHHHHHHHHHHCCeEEEEECcCcHH
Confidence 4788999999877542110 0001222 7899999999999765 777666665555
Q ss_pred HHHHHHhhh
Q 041302 244 YALEMAKLL 252 (484)
Q Consensus 244 YA~~I~~~L 252 (484)
.|......|
T Consensus 56 qa~~Tr~~L 64 (157)
T PF08235_consen 56 QANRTRSWL 64 (157)
T ss_pred HHHHHHHHH
Confidence 555554444
No 229
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.37 E-value=52 Score=28.73 Aligned_cols=51 Identities=14% Similarity=0.459 Sum_probs=32.2
Q ss_pred cccccccccccc---cCceeeeecCCccc----CHHHHHHHHhhhhhhhhhcCccEEE
Q 041302 117 MCYRCGKRLEEE---SGVTFSYICKGLRL----GNDEIDRLRNTDMKHLLRHRKLYLI 167 (484)
Q Consensus 117 ~C~~Cg~~~~~~---~~~~~~~~~~~l~v----s~~ea~~~~~~~~~~ll~~rKL~LV 167 (484)
.|..||..++.. .+.+..-+-=.++| |.+-|.|+.+.....-|++=.|.+|
T Consensus 51 ~CP~Cg~~~e~~fvva~~aLVgl~l~mkVFNaes~EHA~RIAK~eIGk~L~~iPL~vv 108 (115)
T COG1885 51 SCPKCGEPFESAFVVANTALVGLILSMKVFNAESDEHAERIAKAEIGKALKDIPLEVV 108 (115)
T ss_pred cCCCCCCccceeEEEecceeEEEEEEEEEecCCCHHHHHHHHHHHHhhHhhcCCceEE
Confidence 477899998864 12111111112233 7899999999888877877666543
No 230
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=36.03 E-value=20 Score=34.15 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.1
Q ss_pred ccEEEEcCCCceeeecc
Q 041302 163 KLYLILDLDHTLLNSTL 179 (484)
Q Consensus 163 KL~LVLDLDeTLIhs~~ 179 (484)
...+++|+||||+.+..
T Consensus 4 ~~~viFD~DGTL~d~~~ 20 (221)
T PRK10563 4 IEAVFFDCDGTLVDSEV 20 (221)
T ss_pred CCEEEECCCCCCCCChH
Confidence 35789999999998754
No 231
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=35.58 E-value=18 Score=22.75 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=11.3
Q ss_pred CCCCceeec-cccccccccc
Q 041302 107 NCPHPGSLG-GMCYRCGKRL 125 (484)
Q Consensus 107 ~C~H~~~~~-~~C~~Cg~~~ 125 (484)
.|.+.+.-+ ..|..||.+|
T Consensus 4 ~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 4 NCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred ccCCCCCCcCcchhhhCCcC
Confidence 366666533 3677777654
No 232
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=34.71 E-value=17 Score=36.32 Aligned_cols=12 Identities=33% Similarity=0.861 Sum_probs=10.4
Q ss_pred hhhhhhhhcccc
Q 041302 61 KDLERIKRRKTQ 72 (484)
Q Consensus 61 ~~~~~~~~~~~~ 72 (484)
.|++.+|+.|.+
T Consensus 153 ~ELekIKkER~e 164 (244)
T PF04889_consen 153 RELEKIKKERAE 164 (244)
T ss_pred HHHHHHHHHHHH
Confidence 689999998887
No 233
>PRK03922 hypothetical protein; Provisional
Probab=33.51 E-value=60 Score=28.59 Aligned_cols=50 Identities=14% Similarity=0.450 Sum_probs=31.7
Q ss_pred cccccccccccc---cCceeeeecCCccc----CHHHHHHHHhhhhhhhhhcCccEE
Q 041302 117 MCYRCGKRLEEE---SGVTFSYICKGLRL----GNDEIDRLRNTDMKHLLRHRKLYL 166 (484)
Q Consensus 117 ~C~~Cg~~~~~~---~~~~~~~~~~~l~v----s~~ea~~~~~~~~~~ll~~rKL~L 166 (484)
.|..||++++.. .+.+..-+-=.++| |.+.|.|+.+....+-|++=.|.+
T Consensus 51 ~cP~cge~~~~afvvA~taLVgL~lemkVFnAes~EHA~RIAK~eIG~aL~dvPL~v 107 (113)
T PRK03922 51 ICPKCGEPFDSAFVVADTALVGLLLEMKVFNAESEEHASRIAKSEIGKALRDIPLEV 107 (113)
T ss_pred cCCCCCCcCCcEEEEeccceEEEEEEEEEeecCCHHHHHHHHHHHHhhHHhcCCceE
Confidence 588899999864 11111101011122 889999999988888787776654
No 234
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=33.34 E-value=21 Score=22.99 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=11.7
Q ss_pred CCCCceee-ccccccccccc
Q 041302 107 NCPHPGSL-GGMCYRCGKRL 125 (484)
Q Consensus 107 ~C~H~~~~-~~~C~~Cg~~~ 125 (484)
.|.+.+.. ...|..||+.|
T Consensus 7 ~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 7 NCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred ccCCcCCcccccChhhCCCC
Confidence 46665443 34788888764
No 235
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=32.60 E-value=54 Score=34.34 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=49.5
Q ss_pred EEEEecc-cHHHHHHHhhh------CCeEEEecCCcHhHHHHHHhhhC-CCCcccceeEEeecC--------CCC----C
Q 041302 213 MMTKLRP-FVHTFLKEASE------MFEMYIYTMGDRPYALEMAKLLD-PSREYFNARVISRDD--------GTQ----R 272 (484)
Q Consensus 213 ~~vklRP-gl~eFL~~ls~------~yEl~IyT~g~r~YA~~I~~~LD-P~~~~F~~RI~sRd~--------c~~----~ 272 (484)
+.++-|| ++++-|+.|.+ .|+|+|+-.|.+.-+..+++... +- +++.+.-++-.. |-. .
T Consensus 6 v~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i-~~i~~~~~~~~~~~~~~~~~~y~~ia~h 84 (334)
T cd02514 6 VIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGV-THIQHPPISIKNVNPPHKFQGYYRIARH 84 (334)
T ss_pred EEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhcccc-EEEEcccccccccCcccccchhhHHHHH
Confidence 4688999 69999999875 48999999999876666665442 21 123221111000 000 1
Q ss_pred ccccccccCC--CCCcEEEEcCCh
Q 041302 273 HQKGLDVVLG--QESAVLILDDTE 294 (484)
Q Consensus 273 ~~KdL~~l~~--~~~~vVIIDD~~ 294 (484)
+...|+.++. .-+.+|||||.-
T Consensus 85 yk~aln~vF~~~~~~~vIILEDDl 108 (334)
T cd02514 85 YKWALTQTFNLFGYSFVIILEDDL 108 (334)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCC
Confidence 2235666664 378999999953
No 236
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=31.97 E-value=25 Score=33.64 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.6
Q ss_pred ccEEEEcCCCceeeecc
Q 041302 163 KLYLILDLDHTLLNSTL 179 (484)
Q Consensus 163 KL~LVLDLDeTLIhs~~ 179 (484)
|.++++|+|+||+.+..
T Consensus 3 ~~~vifDfDgTi~~~d~ 19 (219)
T PRK09552 3 SIQIFCDFDGTITNNDN 19 (219)
T ss_pred CcEEEEcCCCCCCcchh
Confidence 56899999999997764
No 237
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=31.91 E-value=23 Score=33.10 Aligned_cols=11 Identities=36% Similarity=0.600 Sum_probs=10.3
Q ss_pred EEEEcCCCcee
Q 041302 165 YLILDLDHTLL 175 (484)
Q Consensus 165 ~LVLDLDeTLI 175 (484)
.+|+|+|+||+
T Consensus 3 ~v~FD~DGTL~ 13 (205)
T PRK13582 3 IVCLDLEGVLV 13 (205)
T ss_pred EEEEeCCCCCh
Confidence 68999999999
No 238
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=31.83 E-value=25 Score=37.52 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=15.9
Q ss_pred cCccEEEEcCCCceeeecc
Q 041302 161 HRKLYLILDLDHTLLNSTL 179 (484)
Q Consensus 161 ~rKL~LVLDLDeTLIhs~~ 179 (484)
..-+.+|+|||||||.+..
T Consensus 129 ~~~~~VIFDlDGTLIDS~~ 147 (381)
T PLN02575 129 CGWLGAIFEWEGVIIEDNP 147 (381)
T ss_pred CCCCEEEEcCcCcceeCHH
Confidence 3567899999999999864
No 239
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=31.45 E-value=21 Score=38.52 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=14.2
Q ss_pred cEEEEcCCCceeeecc
Q 041302 164 LYLILDLDHTLLNSTL 179 (484)
Q Consensus 164 L~LVLDLDeTLIhs~~ 179 (484)
..+++||||||++|..
T Consensus 242 k~vIFDlDGTLiDs~~ 257 (459)
T PRK06698 242 QALIFDMDGTLFQTDK 257 (459)
T ss_pred hheeEccCCceecchh
Confidence 4789999999999875
No 240
>PF05864 Chordopox_RPO7: Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7); InterPro: IPR008448 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide sequences. DNA-dependent RNA polymerase catalyses the transcription of DNA into RNA [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=31.43 E-value=18 Score=28.20 Aligned_cols=16 Identities=38% Similarity=0.802 Sum_probs=13.3
Q ss_pred eecccccccccccccc
Q 041302 113 SLGGMCYRCGKRLEEE 128 (484)
Q Consensus 113 ~~~~~C~~Cg~~~~~~ 128 (484)
++.-.|..||.|+.++
T Consensus 2 Vf~lvCSTCGrDlSee 17 (63)
T PF05864_consen 2 VFQLVCSTCGRDLSEE 17 (63)
T ss_pred eeeeeecccCCcchHH
Confidence 4566899999999875
No 241
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=30.58 E-value=23 Score=34.29 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=13.7
Q ss_pred cEEEEcCCCceeeecc
Q 041302 164 LYLILDLDHTLLNSTL 179 (484)
Q Consensus 164 L~LVLDLDeTLIhs~~ 179 (484)
..+++|||||||.|..
T Consensus 3 ~avIFD~DGvLvDse~ 18 (221)
T COG0637 3 KAVIFDMDGTLVDSEP 18 (221)
T ss_pred cEEEEcCCCCcCcchH
Confidence 4689999999999964
No 242
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=30.03 E-value=53 Score=38.76 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=36.9
Q ss_pred hhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhC--CeE
Q 041302 157 HLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEM--FEM 234 (484)
Q Consensus 157 ~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~--yEl 234 (484)
.+...++..|+||+||||+..... -...-|++.+-|++|+.. -.+
T Consensus 590 ~y~~~~~rlI~LDyDGTLlp~~~~---------------------------------~~~p~~~~~~~L~~L~~d~g~~V 636 (854)
T PLN02205 590 AYKRTTTRAILLDYDGTLMPQASI---------------------------------DKSPSSKSIDILNTLCRDKNNMV 636 (854)
T ss_pred HHHhhcCeEEEEecCCcccCCccc---------------------------------cCCCCHHHHHHHHHHHhcCCCEE
Confidence 445567889999999999943310 011336788899998654 455
Q ss_pred EEecCCcHhHHHHHH
Q 041302 235 YIYTMGDRPYALEMA 249 (484)
Q Consensus 235 ~IyT~g~r~YA~~I~ 249 (484)
+|-|--.+.-.+...
T Consensus 637 aIvSGR~~~~L~~~f 651 (854)
T PLN02205 637 FIVSARSRKTLADWF 651 (854)
T ss_pred EEEeCCCHHHHHHHh
Confidence 665544444434333
No 243
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=29.72 E-value=25 Score=33.81 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=10.6
Q ss_pred EEEcCCCceeee
Q 041302 166 LILDLDHTLLNS 177 (484)
Q Consensus 166 LVLDLDeTLIhs 177 (484)
.++|||+|||..
T Consensus 4 a~FDlD~TLi~~ 15 (203)
T TIGR02137 4 ACLDLEGVLVPE 15 (203)
T ss_pred EEEeCCcccHHH
Confidence 799999999954
No 244
>PLN02954 phosphoserine phosphatase
Probab=28.51 E-value=32 Score=32.69 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=14.3
Q ss_pred CccEEEEcCCCceeeecc
Q 041302 162 RKLYLILDLDHTLLNSTL 179 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~~ 179 (484)
....+|+|+|+||+.+..
T Consensus 11 ~~k~viFDfDGTL~~~~~ 28 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEG 28 (224)
T ss_pred cCCEEEEeCCCcccchHH
Confidence 356778899999998754
No 245
>PHA03082 DNA-dependent RNA polymerase subunit; Provisional
Probab=28.10 E-value=21 Score=27.74 Aligned_cols=16 Identities=38% Similarity=0.802 Sum_probs=13.2
Q ss_pred eecccccccccccccc
Q 041302 113 SLGGMCYRCGKRLEEE 128 (484)
Q Consensus 113 ~~~~~C~~Cg~~~~~~ 128 (484)
++.-.|..||.|+.++
T Consensus 2 Vf~lVCsTCGrDlSee 17 (63)
T PHA03082 2 VFQLVCSTCGRDLSEE 17 (63)
T ss_pred eeeeeecccCcchhHH
Confidence 4566899999999875
No 246
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=26.66 E-value=97 Score=33.20 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=37.1
Q ss_pred hhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCCeEEEec
Q 041302 159 LRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMFEMYIYT 238 (484)
Q Consensus 159 l~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~yEl~IyT 238 (484)
++.......+|||+|||.+.... .|....+.+.+-.+|+-..+=..=.+-|-+.|+|
T Consensus 71 v~~~~K~i~FD~dgtlI~t~sg~-----------------------vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~ift 127 (422)
T KOG2134|consen 71 VNGGSKIIMFDYDGTLIDTKSGK-----------------------VFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFT 127 (422)
T ss_pred cCCCcceEEEecCCceeecCCcc-----------------------eeeccCccceeeccccchhhhhhccCCeEEEEEe
Confidence 44566788999999999887521 1111123333444444444444446779999999
Q ss_pred CCc
Q 041302 239 MGD 241 (484)
Q Consensus 239 ~g~ 241 (484)
+..
T Consensus 128 nq~ 130 (422)
T KOG2134|consen 128 NQN 130 (422)
T ss_pred ccc
Confidence 865
No 247
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=26.40 E-value=99 Score=31.05 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=30.7
Q ss_pred EEEEecccHHHHHHHhhhC-CeEEEecCCcHhHHHHHHhhh
Q 041302 213 MMTKLRPFVHTFLKEASEM-FEMYIYTMGDRPYALEMAKLL 252 (484)
Q Consensus 213 ~~vklRPgl~eFL~~ls~~-yEl~IyT~g~r~YA~~I~~~L 252 (484)
.-+.+|.|+.+|++.|.+. -=+.||++|--.-...+++.-
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~ 127 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA 127 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc
Confidence 3589999999999999876 569999999999999999864
No 248
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=26.26 E-value=1.2e+02 Score=35.55 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=45.1
Q ss_pred hhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhC--CeE
Q 041302 157 HLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEM--FEM 234 (484)
Q Consensus 157 ~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~--yEl 234 (484)
++.+.++..|+||.||||+.-... .. ...-+..-|++.+-|+.|++. -.|
T Consensus 501 ~y~~a~~rll~LDyDGTL~~~~~~--~~--------------------------~p~~a~p~~~l~~~L~~L~~d~~~~V 552 (797)
T PLN03063 501 QYSKSNNRLLILGFYGTLTEPRNS--QI--------------------------KEMDLGLHPELKETLKALCSDPKTTV 552 (797)
T ss_pred HHHhccCeEEEEecCccccCCCCC--cc--------------------------ccccCCCCHHHHHHHHHHHcCCCCEE
Confidence 445667899999999999943221 00 011245568999999999865 678
Q ss_pred EEecCCcHhHHHHHHh
Q 041302 235 YIYTMGDRPYALEMAK 250 (484)
Q Consensus 235 ~IyT~g~r~YA~~I~~ 250 (484)
+|-|--++.-.+..+.
T Consensus 553 ~IvSGR~~~~L~~~~~ 568 (797)
T PLN03063 553 VVLSRSGKDILDKNFG 568 (797)
T ss_pred EEEeCCCHHHHHHHhC
Confidence 8888777666665554
No 249
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=26.07 E-value=26 Score=29.75 Aligned_cols=16 Identities=31% Similarity=0.796 Sum_probs=12.7
Q ss_pred eecccccccccccccc
Q 041302 113 SLGGMCYRCGKRLEEE 128 (484)
Q Consensus 113 ~~~~~C~~Cg~~~~~~ 128 (484)
.-.|+|+.||+.|.+.
T Consensus 67 YkkGiCamCGKki~dt 82 (90)
T PF10235_consen 67 YKKGICAMCGKKILDT 82 (90)
T ss_pred cccCcccccCCeeccc
Confidence 3479999999998543
No 250
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=26.06 E-value=30 Score=33.49 Aligned_cols=25 Identities=8% Similarity=0.004 Sum_probs=15.5
Q ss_pred ccHHHHHHHhhh-CCeEEEecCCcHh
Q 041302 219 PFVHTFLKEASE-MFEMYIYTMGDRP 243 (484)
Q Consensus 219 Pgl~eFL~~ls~-~yEl~IyT~g~r~ 243 (484)
+.+.+|++.+.- .+..+|..+|..-
T Consensus 42 ~~v~~~~~~l~l~~~~~~I~~nGa~i 67 (236)
T TIGR02471 42 ESAKSRYAKLNLPSPDVLIARVGTEI 67 (236)
T ss_pred HHHHHHHHhCCCCCCCEEEECCCceE
Confidence 346677776642 3445777777765
No 251
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=25.74 E-value=35 Score=33.72 Aligned_cols=13 Identities=46% Similarity=0.503 Sum_probs=12.1
Q ss_pred ccEEEEcCCCcee
Q 041302 163 KLYLILDLDHTLL 175 (484)
Q Consensus 163 KL~LVLDLDeTLI 175 (484)
++.|+-|||+||+
T Consensus 2 ~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 2 PRLLASDLDGTLI 14 (247)
T ss_dssp SEEEEEETBTTTB
T ss_pred CEEEEEECCCCCc
Confidence 6789999999999
No 252
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=25.52 E-value=37 Score=32.05 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=14.7
Q ss_pred CccEEEEcCCCceeeecc
Q 041302 162 RKLYLILDLDHTLLNSTL 179 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~~ 179 (484)
....+++|+|+||++...
T Consensus 3 ~~k~i~FD~d~TL~d~~~ 20 (229)
T COG1011 3 MIKAILFDLDGTLLDFDS 20 (229)
T ss_pred ceeEEEEecCCcccccch
Confidence 346789999999998764
No 253
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=25.06 E-value=1.4e+02 Score=35.70 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=50.1
Q ss_pred hhhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhC--Ce
Q 041302 156 KHLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEM--FE 233 (484)
Q Consensus 156 ~~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~--yE 233 (484)
.++.+.++..|+||.||||+--...+. .. + .. -..+-+..-|++.+-|+.|+.. -.
T Consensus 584 ~~y~~a~~RLlfLDyDGTLap~~~~P~--~~--------------~----~~--~~~~~a~p~p~l~~~L~~L~~dp~n~ 641 (934)
T PLN03064 584 QRYLQSNNRLLILGFNATLTEPVDTPG--RR--------------G----DQ--IKEMELRLHPELKEPLRALCSDPKTT 641 (934)
T ss_pred HHHHhccceEEEEecCceeccCCCCcc--cc--------------c----cc--ccccccCCCHHHHHHHHHHHhCCCCe
Confidence 345566789999999999986543211 00 0 00 0112355668899999999865 67
Q ss_pred EEEecCCcHhHHHHHHhhh
Q 041302 234 MYIYTMGDRPYALEMAKLL 252 (484)
Q Consensus 234 l~IyT~g~r~YA~~I~~~L 252 (484)
|+|-|--++.-.+..+..+
T Consensus 642 VaIVSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 642 IVVLSGSDRSVLDENFGEF 660 (934)
T ss_pred EEEEeCCCHHHHHHHhCCC
Confidence 8898888888777776554
No 254
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=24.88 E-value=1.1e+02 Score=31.13 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=27.3
Q ss_pred hhcccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEe
Q 041302 375 VRGEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCS 414 (484)
Q Consensus 375 lr~~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~ 414 (484)
-+.++|+|.+|..+- +..++...+.......||.|.
T Consensus 36 ~~~kPl~G~rIa~cL----Hle~kTA~L~~tL~a~GAeV~ 71 (268)
T PF05221_consen 36 EAEKPLKGARIAGCL----HLEAKTAVLAETLKALGAEVR 71 (268)
T ss_dssp TTT-TTTTEEEEEES------SHHHHHHHHHHHHTTEEEE
T ss_pred hccCCCCCCEEEEEE----echHHHHHHHHHHHHcCCeEE
Confidence 357899999997653 335678899999999999986
No 255
>PRK02935 hypothetical protein; Provisional
Probab=24.68 E-value=37 Score=29.64 Aligned_cols=31 Identities=23% Similarity=0.558 Sum_probs=25.1
Q ss_pred cccccccccCCCCceeecc---cccccccccccc
Q 041302 98 CAEVSLEMDNCPHPGSLGG---MCYRCGKRLEEE 128 (484)
Q Consensus 98 ~~~~~~~~~~C~H~~~~~~---~C~~Cg~~~~~~ 128 (484)
+|-|.++=.+|.++..+.| +|..|+++++-.
T Consensus 66 tkavqV~CP~C~K~TKmLGrvD~CM~C~~PLTLd 99 (110)
T PRK02935 66 TKAVQVICPSCEKPTKMLGRVDACMHCNQPLTLD 99 (110)
T ss_pred ccceeeECCCCCchhhhccceeecCcCCCcCCcC
Confidence 4556777789999998765 999999999754
No 256
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=23.79 E-value=2.1e+02 Score=30.18 Aligned_cols=82 Identities=10% Similarity=0.151 Sum_probs=56.0
Q ss_pred hhhhcCccEEEEcCCCceeeeccCCCCChhhhhhhccccccccccccceeeeeceeEEEEecccHHHHHHHhhhCC--eE
Q 041302 157 HLLRHRKLYLILDLDHTLLNSTLLLHLTPEEDYLKSQADSLQDVSKGSLFMLAFMNMMTKLRPFVHTFLKEASEMF--EM 234 (484)
Q Consensus 157 ~ll~~rKL~LVLDLDeTLIhs~~~~~~~~~e~~~~~~~~~~~d~~~~~~f~l~~~~~~vklRPgl~eFL~~ls~~y--El 234 (484)
..++.-...||=|||.|++|+.....+-..-..+ . ....--+.=||+..|++.|.+.= -|
T Consensus 155 ~v~~~a~igiISDiDDTV~~T~V~~~~r~~~~s~----------------~--l~~~tr~~ipGV~~~yr~l~~~~~apv 216 (373)
T COG4850 155 PVLNRAGIGIISDIDDTVKVTGVTEGPRKAGRSL----------------L--LHALTRQVIPGVSAWYRALTNLGDAPV 216 (373)
T ss_pred eeecccceeeeeccccceEecccccchHHHHHHh----------------h--hcccccCCCCCHHHHHHHHHhcCCCCe
Confidence 4567778999999999999998743210000000 0 01122445699999999998877 57
Q ss_pred EEecCCcHhHHHHHHhhhCCCC
Q 041302 235 YIYTMGDRPYALEMAKLLDPSR 256 (484)
Q Consensus 235 ~IyT~g~r~YA~~I~~~LDP~~ 256 (484)
+--+++.-..=....+.|+-++
T Consensus 217 fYvSnSPw~~f~~L~efi~~~~ 238 (373)
T COG4850 217 FYVSNSPWQLFPTLQEFITNRN 238 (373)
T ss_pred EEecCChhHhHHHHHHHHhcCC
Confidence 7778888888788888888654
No 257
>PLN02940 riboflavin kinase
Probab=23.72 E-value=41 Score=35.60 Aligned_cols=17 Identities=53% Similarity=0.534 Sum_probs=13.9
Q ss_pred ccEEEEcCCCceeeecc
Q 041302 163 KLYLILDLDHTLLNSTL 179 (484)
Q Consensus 163 KL~LVLDLDeTLIhs~~ 179 (484)
-..+++||||||+.+..
T Consensus 11 ik~VIFDlDGTLvDt~~ 27 (382)
T PLN02940 11 VSHVILDLDGTLLNTDG 27 (382)
T ss_pred CCEEEECCcCcCCcCHH
Confidence 34689999999998754
No 258
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=22.24 E-value=1e+02 Score=36.29 Aligned_cols=90 Identities=4% Similarity=-0.050 Sum_probs=63.5
Q ss_pred hcccccceeeeeeeccCCCCCcchHHHHHHHHHhCCeEe-eecCCCccEEEEcCCCChHHHHHHhc-CCeeeChhhHHHH
Q 041302 376 RGEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCS-IELDPSVTHVVSTDARTEKSRWAAKE-AKFLVDPRWIETA 453 (484)
Q Consensus 376 r~~vL~G~~IvfSG~~p~~~~~~~~~l~~la~~lGA~v~-~~i~~~vTHlVa~~~~T~K~~~A~~~-gi~IV~~~WL~~c 453 (484)
....|+|+.|+..|.. ++....+.+.-.-+|+... ..--..+||+||......|++ .. +-+..++.|+.+|
T Consensus 44 ~~s~fs~is~~~ngs~----~e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~a~~vk---~~~~~~~~~~e~iie~ 116 (1016)
T KOG2093|consen 44 GSSSFSGISISVNGST----DESANELKLQNMFHTGASAASYERSGTENIIAQGLPADLVK---GFTIPKHISIEWIIEC 116 (1016)
T ss_pred CcceeeeeeeccCCcc----ccchHHHhhhhhhcccccccccccccceeeecccchHHHhc---cccchhhhcHHHHHHH
Confidence 4567888888777753 4445567777777888877 444568999999876544432 12 2357899999999
Q ss_pred HHhcCCCCCCCCCCCCCCC
Q 041302 454 NFLWQRQPEENFPVQQTKP 472 (484)
Q Consensus 454 ~~~w~r~dE~~Y~l~~~~~ 472 (484)
.....-+.=.+|.+.....
T Consensus 117 ~~~~~~~~~~~~~~~t~~~ 135 (1016)
T KOG2093|consen 117 CENGMDVGYYPYQLYTGQS 135 (1016)
T ss_pred HhccCccccccceeeccch
Confidence 9999988888877654433
No 259
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=21.99 E-value=45 Score=31.28 Aligned_cols=46 Identities=7% Similarity=-0.062 Sum_probs=29.6
Q ss_pred CcchHHHHHHHHHhCCeEeeecCCCccEEEEcCCCChHHHHHHhcCCeeeChhh
Q 041302 396 PADTHYLWKMAEQLGATCSIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRW 449 (484)
Q Consensus 396 ~~~~~~l~~la~~lGA~v~~~i~~~vTHlVa~~~~T~K~~~A~~~gi~IV~~~W 449 (484)
+|....+...++.+|. ++.-+.+| .+ ...-+..|++.|++.|...+
T Consensus 141 KP~p~~~~~~~~~~~~------~p~~~l~v-gD-~~~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 141 KPEARIYQHVLQAEGF------SAADAVFF-DD-NADNIEAANALGITSILVTD 186 (199)
T ss_pred CCCHHHHHHHHHHcCC------ChhHeEEe-CC-CHHHHHHHHHcCCEEEEecC
Confidence 6777777788888874 23333333 33 33458888889988776554
No 260
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=21.32 E-value=48 Score=31.13 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=12.6
Q ss_pred CccEEEEcCCCceeeec
Q 041302 162 RKLYLILDLDHTLLNST 178 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~ 178 (484)
||+.|.+|+|+||....
T Consensus 1 ~~i~I~iDiDgVLad~~ 17 (191)
T PF06941_consen 1 RKIRIAIDIDGVLADFN 17 (191)
T ss_dssp --EEEEEESBTTTB-HH
T ss_pred CCcEEEEECCCCCcccH
Confidence 57789999999999764
No 261
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=21.20 E-value=43 Score=29.58 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=23.8
Q ss_pred cccccccccCCCCceeecc---cccccccccccc
Q 041302 98 CAEVSLEMDNCPHPGSLGG---MCYRCGKRLEEE 128 (484)
Q Consensus 98 ~~~~~~~~~~C~H~~~~~~---~C~~Cg~~~~~~ 128 (484)
+|-+.++=.+|.|+.-+.| +|..|+++++-.
T Consensus 65 tkav~V~CP~C~K~TKmLGr~D~CM~C~~pLTLd 98 (114)
T PF11023_consen 65 TKAVQVECPNCGKQTKMLGRVDACMHCKEPLTLD 98 (114)
T ss_pred ccceeeECCCCCChHhhhchhhccCcCCCcCccC
Confidence 3445666789999987654 999999999754
No 262
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=21.19 E-value=50 Score=31.83 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.7
Q ss_pred CccEEEEcCCCceeeecc
Q 041302 162 RKLYLILDLDHTLLNSTL 179 (484)
Q Consensus 162 rKL~LVLDLDeTLIhs~~ 179 (484)
-|...++|+|+||++.-.
T Consensus 4 ~~~la~FDfDgTLt~~ds 21 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQDM 21 (210)
T ss_pred cCcEEEEcCCCCCccCcc
Confidence 356689999999998865
No 263
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=20.58 E-value=55 Score=33.95 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=14.7
Q ss_pred hcCccEEEEcCCCceeeec
Q 041302 160 RHRKLYLILDLDHTLLNST 178 (484)
Q Consensus 160 ~~rKL~LVLDLDeTLIhs~ 178 (484)
..++..+|+|+|+|||...
T Consensus 107 ~~~~~LvvfDmDGTLI~~e 125 (322)
T PRK11133 107 LRTPGLLVMDMDSTAIQIE 125 (322)
T ss_pred ccCCCEEEEECCCCCcchH
Confidence 3456788999999999443
Done!