Query 041305
Match_columns 225
No_of_seqs 118 out of 1204
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 8.7E-40 1.9E-44 244.8 21.9 215 4-222 8-223 (231)
2 PRK09481 sspA stringent starva 100.0 3.1E-38 6.7E-43 241.5 22.1 199 4-215 9-207 (211)
3 PRK15113 glutathione S-transfe 100.0 1.5E-35 3.2E-40 227.2 18.4 196 1-212 1-210 (214)
4 PLN02473 glutathione S-transfe 100.0 1.8E-35 3.9E-40 226.9 18.6 195 6-209 3-210 (214)
5 PLN02395 glutathione S-transfe 100.0 2.4E-34 5.2E-39 220.8 18.7 195 6-210 3-210 (215)
6 TIGR01262 maiA maleylacetoacet 100.0 3.1E-34 6.7E-39 219.4 18.8 193 7-211 1-205 (210)
7 PRK10542 glutathionine S-trans 100.0 1.4E-34 2.9E-39 219.9 16.7 190 6-210 1-197 (201)
8 PRK13972 GSH-dependent disulfi 100.0 2.5E-34 5.3E-39 220.7 16.9 188 6-210 2-205 (215)
9 PRK10357 putative glutathione 100.0 1.4E-33 2.9E-38 214.6 20.3 193 6-210 1-200 (202)
10 KOG0868 Glutathione S-transfer 100.0 3.8E-34 8.3E-39 202.0 15.4 200 1-212 1-209 (217)
11 TIGR00862 O-ClC intracellular 100.0 3E-33 6.6E-38 214.6 21.3 201 11-222 16-232 (236)
12 COG0625 Gst Glutathione S-tran 100.0 1.3E-33 2.8E-38 216.1 19.3 186 6-205 1-199 (211)
13 PRK11752 putative S-transferas 100.0 1.3E-32 2.9E-37 216.5 19.2 197 5-211 44-259 (264)
14 PTZ00057 glutathione s-transfe 100.0 3.5E-32 7.5E-37 207.2 18.1 193 1-212 1-201 (205)
15 PLN02378 glutathione S-transfe 100.0 2.7E-31 5.8E-36 203.3 20.7 192 10-219 16-208 (213)
16 PLN02817 glutathione dehydroge 100.0 4.2E-31 9.1E-36 207.1 21.1 191 12-221 71-262 (265)
17 KOG0867 Glutathione S-transfer 100.0 6.2E-30 1.3E-34 196.7 17.6 196 5-210 2-209 (226)
18 PRK10387 glutaredoxin 2; Provi 100.0 5.8E-30 1.3E-34 195.8 16.9 180 6-205 1-208 (210)
19 KOG1695 Glutathione S-transfer 100.0 8.8E-29 1.9E-33 184.5 16.7 194 5-211 3-201 (206)
20 TIGR02182 GRXB Glutaredoxin, G 100.0 6.2E-28 1.3E-32 184.1 16.3 178 7-205 1-207 (209)
21 KOG4420 Uncharacterized conser 100.0 1.7E-27 3.7E-32 177.8 12.9 215 6-224 27-303 (325)
22 KOG1422 Intracellular Cl- chan 99.9 1.6E-24 3.5E-29 157.6 16.9 196 12-221 19-216 (221)
23 PLN02907 glutamate-tRNA ligase 99.9 7.8E-23 1.7E-27 178.6 16.6 158 1-203 1-159 (722)
24 KOG4244 Failed axon connection 99.8 9E-20 1.9E-24 137.5 13.3 181 4-201 44-273 (281)
25 PF13417 GST_N_3: Glutathione 99.8 2.5E-20 5.5E-25 118.9 8.5 72 8-80 1-72 (75)
26 cd03059 GST_N_SspA GST_N famil 99.8 2.9E-19 6.3E-24 113.5 8.7 73 6-79 1-73 (73)
27 KOG3029 Glutathione S-transfer 99.8 1.3E-18 2.7E-23 132.0 13.0 186 5-201 90-355 (370)
28 cd03052 GST_N_GDAP1 GST_N fami 99.8 2.4E-19 5.2E-24 113.6 7.7 70 6-76 1-73 (73)
29 cd03058 GST_N_Tau GST_N family 99.8 5E-19 1.1E-23 112.7 8.6 73 6-79 1-74 (74)
30 cd03061 GST_N_CLIC GST_N famil 99.8 6E-19 1.3E-23 115.0 8.7 68 12-80 20-87 (91)
31 cd03041 GST_N_2GST_N GST_N fam 99.8 1.1E-18 2.3E-23 112.0 8.0 73 6-79 2-77 (77)
32 cd03045 GST_N_Delta_Epsilon GS 99.8 1.2E-18 2.7E-23 110.9 7.7 71 6-77 1-74 (74)
33 cd03076 GST_N_Pi GST_N family, 99.8 9.1E-19 2E-23 111.1 6.3 71 6-77 2-72 (73)
34 cd03060 GST_N_Omega_like GST_N 99.8 2.2E-18 4.9E-23 108.8 8.0 69 6-75 1-70 (71)
35 cd03050 GST_N_Theta GST_N fami 99.8 3.5E-18 7.6E-23 109.4 8.7 73 6-79 1-76 (76)
36 cd03053 GST_N_Phi GST_N family 99.8 3.1E-18 6.7E-23 109.6 8.3 71 6-77 2-75 (76)
37 cd03048 GST_N_Ure2p_like GST_N 99.7 7.9E-18 1.7E-22 109.1 8.4 73 6-80 2-80 (81)
38 cd03056 GST_N_4 GST_N family, 99.7 7.2E-18 1.6E-22 107.0 7.5 70 6-76 1-73 (73)
39 cd03055 GST_N_Omega GST_N fami 99.7 9.1E-18 2E-22 110.6 7.9 72 4-76 17-89 (89)
40 cd03044 GST_N_EF1Bgamma GST_N 99.7 9.9E-18 2.1E-22 106.9 7.7 70 7-77 2-74 (75)
41 cd03039 GST_N_Sigma_like GST_N 99.7 4.3E-18 9.3E-23 107.8 5.9 71 6-77 1-72 (72)
42 cd03185 GST_C_Tau GST_C family 99.7 8.3E-17 1.8E-21 113.1 12.9 124 92-220 2-125 (126)
43 cd03047 GST_N_2 GST_N family, 99.7 1E-17 2.2E-22 106.3 7.5 70 6-76 1-73 (73)
44 cd03049 GST_N_3 GST_N family, 99.7 9.8E-18 2.1E-22 106.4 7.3 70 6-76 1-73 (73)
45 cd03037 GST_N_GRX2 GST_N famil 99.7 1.8E-17 3.9E-22 104.6 7.6 70 6-77 1-71 (71)
46 cd03046 GST_N_GTT1_like GST_N 99.7 2.3E-17 5E-22 105.5 8.1 73 6-80 1-76 (76)
47 cd03051 GST_N_GTT2_like GST_N 99.7 1.7E-17 3.6E-22 105.6 7.1 70 6-76 1-74 (74)
48 cd03057 GST_N_Beta GST_N famil 99.7 4.1E-17 8.9E-22 104.7 8.2 73 6-80 1-77 (77)
49 cd03190 GST_C_ECM4_like GST_C 99.7 2E-16 4.3E-21 113.4 12.4 128 92-223 3-131 (142)
50 cd03040 GST_N_mPGES2 GST_N fam 99.7 3.5E-17 7.6E-22 105.0 7.6 73 5-80 1-77 (77)
51 cd03042 GST_N_Zeta GST_N famil 99.7 4.4E-17 9.6E-22 103.4 7.5 70 6-76 1-73 (73)
52 cd03077 GST_N_Alpha GST_N fami 99.7 6E-17 1.3E-21 104.2 8.1 72 5-80 1-77 (79)
53 cd03080 GST_N_Metaxin_like GST 99.7 1.1E-16 2.3E-21 102.1 8.2 67 6-80 2-75 (75)
54 COG0435 ECM4 Predicted glutath 99.7 2.4E-16 5.2E-21 119.5 11.4 199 3-209 49-285 (324)
55 cd03075 GST_N_Mu GST_N family, 99.7 6.6E-17 1.4E-21 104.7 7.2 73 6-79 1-82 (82)
56 PF02798 GST_N: Glutathione S- 99.7 1.1E-16 2.4E-21 102.2 7.6 72 6-77 1-76 (76)
57 PF13409 GST_N_2: Glutathione 99.7 1E-16 2.2E-21 100.7 7.1 65 13-78 1-70 (70)
58 COG2999 GrxB Glutaredoxin 2 [P 99.7 2.3E-15 5E-20 107.0 14.3 180 6-205 1-208 (215)
59 cd03184 GST_C_Omega GST_C fami 99.7 1.5E-15 3.4E-20 106.4 10.8 122 93-220 2-123 (124)
60 cd03038 GST_N_etherase_LigE GS 99.7 3.9E-16 8.5E-21 101.8 7.2 67 12-80 14-84 (84)
61 KOG2903 Predicted glutathione 99.7 1E-15 2.3E-20 115.1 10.3 214 3-221 35-299 (319)
62 cd03186 GST_C_SspA GST_N famil 99.6 2.8E-15 6E-20 102.3 11.0 105 92-207 2-106 (107)
63 cd03196 GST_C_5 GST_C family, 99.6 2E-15 4.3E-20 104.3 10.1 111 90-208 3-115 (115)
64 cd03043 GST_N_1 GST_N family, 99.6 1.5E-15 3.3E-20 96.2 8.1 67 9-76 5-73 (73)
65 cd03198 GST_C_CLIC GST_C famil 99.6 3.2E-15 6.9E-20 104.8 10.4 111 107-219 10-133 (134)
66 cd03188 GST_C_Beta GST_C famil 99.6 2.5E-15 5.5E-20 103.6 9.6 105 93-208 2-114 (114)
67 cd00570 GST_N_family Glutathio 99.6 2.4E-15 5.2E-20 94.2 7.4 70 6-76 1-71 (71)
68 cd03054 GST_N_Metaxin GST_N fa 99.6 8.4E-15 1.8E-19 92.6 7.6 65 6-78 1-72 (72)
69 cd03201 GST_C_DHAR GST_C famil 99.6 5.3E-14 1.1E-18 97.9 11.8 106 108-220 14-120 (121)
70 cd03182 GST_C_GTT2_like GST_C 99.6 7.8E-14 1.7E-18 96.6 11.9 105 90-204 1-117 (117)
71 cd03191 GST_C_Zeta GST_C famil 99.6 1.6E-14 3.4E-19 100.8 8.4 111 92-211 2-120 (121)
72 cd03189 GST_C_GTT1_like GST_C 99.6 7.2E-14 1.6E-18 97.1 11.0 104 88-202 2-119 (119)
73 cd03203 GST_C_Lambda GST_C fam 99.6 1.3E-13 2.8E-18 96.0 12.1 117 90-218 1-119 (120)
74 cd03209 GST_C_Mu GST_C family, 99.5 7.3E-14 1.6E-18 97.4 9.8 110 93-213 2-112 (121)
75 cd03178 GST_C_Ure2p_like GST_C 99.5 3.4E-14 7.3E-19 97.8 7.0 105 94-208 2-112 (113)
76 cd03177 GST_C_Delta_Epsilon GS 99.5 5.7E-14 1.2E-18 97.5 8.2 106 93-208 2-110 (118)
77 cd03210 GST_C_Pi GST_C family, 99.5 1.3E-13 2.8E-18 96.8 9.6 113 92-212 2-114 (126)
78 cd03187 GST_C_Phi GST_C family 99.5 1.4E-13 3E-18 95.5 9.2 106 93-207 2-117 (118)
79 cd03180 GST_C_2 GST_C family, 99.5 3E-13 6.5E-18 92.5 10.6 101 93-204 2-110 (110)
80 cd03181 GST_C_EFB1gamma GST_C 99.5 1.7E-13 3.7E-18 95.8 8.4 111 94-212 2-118 (123)
81 cd03208 GST_C_Alpha GST_C fami 99.5 4.8E-13 1E-17 95.2 10.4 111 92-211 2-116 (137)
82 cd03200 GST_C_JTV1 GST_C famil 99.5 6.6E-13 1.4E-17 88.5 9.2 96 72-201 1-96 (96)
83 cd03183 GST_C_Theta GST_C fami 99.5 2.9E-13 6.3E-18 95.0 7.5 106 94-208 2-120 (126)
84 cd03207 GST_C_8 GST_C family, 99.4 2.2E-13 4.7E-18 92.2 5.7 98 100-209 4-101 (103)
85 cd03195 GST_C_4 GST_C family, 99.4 1.3E-12 2.7E-17 90.2 8.4 105 92-209 2-112 (114)
86 PF00043 GST_C: Glutathione S- 99.4 2.7E-12 5.8E-17 85.5 8.7 73 121-202 23-95 (95)
87 cd03206 GST_C_7 GST_C family, 99.4 2.1E-12 4.5E-17 86.9 7.1 71 123-204 30-100 (100)
88 PF13410 GST_C_2: Glutathione 99.4 4.1E-12 8.8E-17 79.5 7.3 68 122-197 2-69 (69)
89 cd03204 GST_C_GDAP1 GST_C fami 99.3 1.2E-11 2.7E-16 84.1 9.0 83 118-204 21-111 (111)
90 KOG3028 Translocase of outer m 99.3 2.1E-10 4.6E-15 89.2 16.7 174 13-201 16-234 (313)
91 cd03179 GST_C_1 GST_C family, 99.3 7.7E-12 1.7E-16 84.8 7.5 96 93-199 2-105 (105)
92 cd03079 GST_N_Metaxin2 GST_N f 99.3 7.5E-12 1.6E-16 78.4 6.5 59 12-77 15-73 (74)
93 KOG3027 Mitochondrial outer me 99.3 1E-10 2.2E-15 85.5 13.2 171 15-201 35-248 (257)
94 cd03192 GST_C_Sigma_like GST_C 99.3 3.2E-11 7E-16 81.6 9.6 98 93-198 2-104 (104)
95 TIGR02190 GlrX-dom Glutaredoxi 99.2 4.3E-11 9.2E-16 76.9 7.7 72 4-76 8-79 (79)
96 cd03194 GST_C_3 GST_C family, 99.2 3.7E-11 8E-16 82.8 7.8 75 124-209 39-113 (114)
97 PF14497 GST_C_3: Glutathione 99.2 2.7E-11 5.9E-16 81.3 6.2 95 91-200 3-99 (99)
98 cd00299 GST_C_family Glutathio 99.2 8E-11 1.7E-15 78.7 7.8 93 98-198 2-100 (100)
99 cd03193 GST_C_Metaxin GST_C fa 99.2 1.5E-10 3.2E-15 76.0 6.8 70 126-199 19-88 (88)
100 cd03202 GST_C_etherase_LigE GS 99.1 3.8E-10 8.3E-15 78.9 7.7 69 124-201 56-124 (124)
101 PRK10638 glutaredoxin 3; Provi 99.1 5.6E-10 1.2E-14 72.3 7.6 73 1-76 1-74 (83)
102 cd03078 GST_N_Metaxin1_like GS 99.1 7.2E-10 1.6E-14 69.8 7.8 58 13-78 15-72 (73)
103 cd03029 GRX_hybridPRX5 Glutare 99.1 1.2E-09 2.6E-14 68.8 7.6 71 5-76 2-72 (72)
104 PF14834 GST_C_4: Glutathione 98.9 7.6E-09 1.6E-13 69.1 8.1 106 90-208 1-112 (117)
105 cd03205 GST_C_6 GST_C family, 98.9 1E-08 2.2E-13 68.6 8.7 69 119-198 30-98 (98)
106 cd03197 GST_C_mPGES2 GST_C fam 98.9 5.6E-09 1.2E-13 74.1 7.3 47 148-200 98-145 (149)
107 cd03027 GRX_DEP Glutaredoxin ( 98.9 1.1E-08 2.5E-13 64.5 6.9 67 5-72 2-69 (73)
108 cd03211 GST_C_Metaxin2 GST_C f 98.9 6.5E-09 1.4E-13 72.8 6.0 74 121-199 52-126 (126)
109 PRK10329 glutaredoxin-like pro 98.8 2.4E-08 5.1E-13 64.2 6.4 61 5-66 2-62 (81)
110 TIGR02196 GlrX_YruB Glutaredox 98.8 3.3E-08 7.2E-13 62.1 7.0 70 5-75 1-73 (74)
111 cd03212 GST_C_Metaxin1_3 GST_C 98.8 2.9E-08 6.4E-13 70.5 7.2 75 121-200 59-134 (137)
112 cd02066 GRX_family Glutaredoxi 98.8 4.6E-08 9.9E-13 61.1 7.1 69 5-74 1-70 (72)
113 cd02976 NrdH NrdH-redoxin (Nrd 98.7 6.4E-08 1.4E-12 60.7 6.2 62 6-68 2-64 (73)
114 cd03418 GRX_GRXb_1_3_like Glut 98.7 1.2E-07 2.6E-12 60.0 7.1 71 5-75 1-72 (75)
115 TIGR02200 GlrX_actino Glutared 98.6 1.4E-07 2.9E-12 60.0 6.9 70 5-75 1-75 (77)
116 TIGR02194 GlrX_NrdH Glutaredox 98.5 4.2E-07 9E-12 57.1 6.0 57 6-63 1-57 (72)
117 TIGR02181 GRX_bact Glutaredoxi 98.5 7E-07 1.5E-11 57.1 7.1 70 6-76 1-71 (79)
118 PF00462 Glutaredoxin: Glutare 98.5 4.1E-07 8.8E-12 54.9 4.9 59 6-65 1-60 (60)
119 COG0695 GrxC Glutaredoxin and 98.4 1.7E-06 3.7E-11 55.4 7.3 69 5-74 2-73 (80)
120 PRK11200 grxA glutaredoxin 1; 98.4 2.1E-06 4.5E-11 55.7 7.8 75 5-80 2-84 (85)
121 TIGR02189 GlrX-like_plant Glut 98.4 3.8E-06 8.2E-11 56.1 8.8 71 3-74 7-81 (99)
122 cd03419 GRX_GRXh_1_2_like Glut 98.3 5E-06 1.1E-10 53.4 8.3 71 5-76 1-75 (82)
123 PHA03050 glutaredoxin; Provisi 98.3 8E-06 1.7E-10 55.4 8.5 70 3-73 12-88 (108)
124 TIGR02183 GRXA Glutaredoxin, G 98.3 7.8E-06 1.7E-10 53.2 7.6 74 6-80 2-83 (86)
125 TIGR00365 monothiol glutaredox 98.1 1.5E-05 3.2E-10 53.1 7.3 71 3-74 11-87 (97)
126 TIGR02180 GRX_euk Glutaredoxin 98.1 4.1E-05 8.9E-10 49.2 8.2 70 6-76 1-76 (84)
127 cd03028 GRX_PICOT_like Glutare 98.0 3.6E-05 7.8E-10 50.5 7.4 71 4-75 8-84 (90)
128 PF10568 Tom37: Outer mitochon 97.8 0.00011 2.4E-09 45.8 6.8 55 13-75 13-71 (72)
129 cd03031 GRX_GRX_like Glutaredo 97.5 0.00045 9.8E-09 49.4 7.1 68 5-73 1-79 (147)
130 PRK12759 bifunctional gluaredo 97.5 0.00048 1E-08 57.9 8.0 68 5-73 3-79 (410)
131 PRK10824 glutaredoxin-4; Provi 97.5 0.00068 1.5E-08 46.4 7.2 71 3-74 14-90 (115)
132 KOG1147 Glutamyl-tRNA syntheta 97.5 8.2E-05 1.8E-09 62.6 3.1 119 60-208 43-162 (712)
133 PF04399 Glutaredoxin2_C: Glut 97.5 0.00047 1E-08 48.2 6.2 67 125-204 58-124 (132)
134 cd03199 GST_C_GRX2 GST_C famil 97.3 0.0017 3.7E-08 45.1 7.1 67 125-204 59-125 (128)
135 COG4545 Glutaredoxin-related p 97.2 0.0016 3.6E-08 40.0 5.5 63 1-66 1-77 (85)
136 cd02973 TRX_GRX_like Thioredox 97.0 0.0032 7E-08 38.4 5.6 58 5-66 2-64 (67)
137 PTZ00062 glutaredoxin; Provisi 96.9 0.0047 1E-07 46.8 7.2 69 4-73 113-187 (204)
138 KOG1752 Glutaredoxin and relat 96.9 0.013 2.7E-07 39.3 8.4 70 4-74 14-87 (104)
139 cd03036 ArsC_like Arsenate Red 96.8 0.0031 6.7E-08 43.0 5.0 33 6-38 1-33 (111)
140 cd02977 ArsC_family Arsenate R 96.7 0.0047 1E-07 41.6 5.2 32 6-37 1-32 (105)
141 PRK01655 spxA transcriptional 96.7 0.0029 6.2E-08 44.5 4.3 32 6-37 2-33 (131)
142 cd03032 ArsC_Spx Arsenate Redu 96.6 0.0063 1.4E-07 41.7 5.3 32 6-37 2-33 (115)
143 PRK12559 transcriptional regul 96.4 0.01 2.3E-07 41.7 5.4 33 6-38 2-34 (131)
144 PRK13344 spxA transcriptional 96.3 0.012 2.6E-07 41.4 5.6 33 6-38 2-34 (132)
145 TIGR01617 arsC_related transcr 96.3 0.0073 1.6E-07 41.6 4.2 32 6-37 1-32 (117)
146 cd03033 ArsC_15kD Arsenate Red 96.1 0.012 2.5E-07 40.3 4.2 32 6-37 2-33 (113)
147 PRK10026 arsenate reductase; P 96.0 0.012 2.6E-07 41.8 4.3 35 1-37 1-35 (141)
148 cd03035 ArsC_Yffb Arsenate Red 96.0 0.012 2.6E-07 39.7 4.1 32 6-37 1-32 (105)
149 COG0278 Glutaredoxin-related p 96.0 0.045 9.8E-07 35.9 6.4 68 4-75 15-92 (105)
150 PF05768 DUF836: Glutaredoxin- 95.7 0.14 2.9E-06 32.7 7.9 55 5-62 1-57 (81)
151 cd03030 GRX_SH3BGR Glutaredoxi 95.4 0.1 2.2E-06 34.2 6.6 67 6-73 2-79 (92)
152 TIGR00412 redox_disulf_2 small 95.3 0.11 2.4E-06 32.6 6.4 54 6-65 3-60 (76)
153 COG1393 ArsC Arsenate reductas 95.2 0.06 1.3E-06 37.0 5.3 33 5-37 2-34 (117)
154 TIGR00411 redox_disulf_1 small 95.2 0.21 4.7E-06 31.4 7.7 57 5-63 2-62 (82)
155 PRK10853 putative reductase; P 95.1 0.045 9.8E-07 37.7 4.3 32 6-37 2-33 (118)
156 TIGR01616 nitro_assoc nitrogen 94.8 0.054 1.2E-06 37.8 4.2 33 5-37 2-34 (126)
157 cd01659 TRX_superfamily Thiore 94.4 0.17 3.7E-06 29.2 5.4 53 6-59 1-58 (69)
158 cd03034 ArsC_ArsC Arsenate Red 94.3 0.079 1.7E-06 36.1 4.1 32 6-37 1-32 (112)
159 PF11287 DUF3088: Protein of u 94.3 0.16 3.6E-06 34.1 5.3 68 13-80 23-108 (112)
160 TIGR00014 arsC arsenate reduct 94.3 0.079 1.7E-06 36.2 4.0 32 6-37 1-32 (114)
161 PHA02125 thioredoxin-like prot 94.0 0.27 5.9E-06 30.7 5.8 51 6-60 2-52 (75)
162 cd03026 AhpF_NTD_C TRX-GRX-lik 93.8 0.23 4.9E-06 32.3 5.2 58 5-66 15-77 (89)
163 PF04908 SH3BGR: SH3-binding, 91.7 0.8 1.7E-05 30.4 5.7 65 6-71 3-83 (99)
164 PF11801 Tom37_C: Tom37 C-term 91.5 0.55 1.2E-05 34.5 5.2 42 130-172 112-154 (168)
165 PF13192 Thioredoxin_3: Thiore 90.9 1.1 2.5E-05 27.9 5.7 56 6-67 3-62 (76)
166 PF03960 ArsC: ArsC family; I 86.9 0.96 2.1E-05 30.5 3.4 29 9-37 1-29 (110)
167 KOG0911 Glutaredoxin-related p 84.7 2.5 5.4E-05 32.3 4.9 70 5-75 140-215 (227)
168 PF00085 Thioredoxin: Thioredo 82.7 10 0.00023 24.4 9.0 70 5-77 20-102 (103)
169 PF09635 MetRS-N: MetRS-N bind 78.8 1.1 2.3E-05 30.8 1.1 27 54-80 35-63 (122)
170 cd02949 TRX_NTR TRX domain, no 76.8 17 0.00036 23.5 6.4 58 6-65 17-80 (97)
171 cd02953 DsbDgamma DsbD gamma f 76.7 12 0.00026 24.5 5.8 52 6-59 15-77 (104)
172 cd02989 Phd_like_TxnDC9 Phosdu 76.5 19 0.00042 24.2 6.8 57 6-66 26-89 (113)
173 cd02963 TRX_DnaJ TRX domain, D 76.3 20 0.00044 23.9 7.5 58 5-64 27-91 (111)
174 TIGR01295 PedC_BrcD bacterioci 75.5 18 0.00038 24.9 6.5 32 6-37 27-62 (122)
175 cd02947 TRX_family TRX family; 70.6 22 0.00048 21.9 6.5 54 6-63 14-74 (93)
176 TIGR02187 GlrX_arch Glutaredox 68.4 26 0.00055 26.7 6.6 53 5-59 136-191 (215)
177 TIGR03143 AhpF_homolog putativ 67.3 12 0.00026 33.1 5.1 55 5-64 479-539 (555)
178 cd02975 PfPDO_like_N Pyrococcu 66.2 23 0.00049 23.9 5.3 52 6-59 25-80 (113)
179 COG3011 Predicted thiol-disulf 65.1 46 0.001 23.5 7.1 79 1-79 5-87 (137)
180 cd02984 TRX_PICOT TRX domain, 63.7 35 0.00077 21.7 6.9 57 6-64 18-80 (97)
181 cd02951 SoxW SoxW family; SoxW 62.7 38 0.00081 23.0 6.0 17 5-21 17-33 (125)
182 PF11417 Inhibitor_G39P: Loade 61.0 37 0.0008 21.0 5.0 38 67-106 5-42 (71)
183 KOG1668 Elongation factor 1 be 59.5 6.9 0.00015 30.1 1.9 59 132-205 10-68 (231)
184 cd02962 TMX2 TMX2 family; comp 58.3 63 0.0014 23.2 6.6 60 6-66 51-122 (152)
185 TIGR03140 AhpF alkyl hydropero 57.7 8.5 0.00018 33.7 2.4 72 5-78 120-198 (515)
186 KOG2824 Glutaredoxin-related p 56.2 23 0.00049 28.2 4.2 69 4-73 131-210 (281)
187 PF12290 DUF3802: Protein of u 56.2 42 0.00091 22.7 4.9 85 69-165 9-96 (113)
188 PRK15317 alkyl hydroperoxide r 56.0 10 0.00022 33.2 2.7 72 5-78 119-197 (517)
189 COG5460 Uncharacterized conser 55.3 50 0.0011 20.7 5.5 32 70-110 17-48 (82)
190 PF01323 DSBA: DSBA-like thior 55.3 24 0.00052 25.9 4.3 35 5-39 1-40 (193)
191 KOG3425 Uncharacterized conser 54.9 59 0.0013 22.5 5.5 70 10-79 41-123 (128)
192 cd02978 KaiB_like KaiB-like fa 54.6 30 0.00065 21.5 3.8 53 5-59 3-60 (72)
193 COG3118 Thioredoxin domain-con 54.3 1.1E+02 0.0024 24.8 7.8 75 4-80 45-131 (304)
194 cd03003 PDI_a_ERdj5_N PDIa fam 53.8 58 0.0013 21.0 6.1 55 6-63 22-83 (101)
195 PF04134 DUF393: Protein of un 52.2 55 0.0012 21.8 5.4 67 8-76 1-75 (114)
196 cd02948 TRX_NDPK TRX domain, T 51.5 66 0.0014 21.0 7.3 56 6-64 21-83 (102)
197 PRK09381 trxA thioredoxin; Pro 50.7 69 0.0015 21.0 8.5 58 6-65 25-88 (109)
198 PHA02278 thioredoxin-like prot 50.4 72 0.0016 21.1 7.1 59 6-65 18-85 (103)
199 PRK10996 thioredoxin 2; Provis 49.3 89 0.0019 21.8 8.5 58 6-65 56-119 (139)
200 cd03021 DsbA_GSTK DsbA family, 49.1 29 0.00064 26.2 4.0 35 4-38 1-39 (209)
201 PF06110 DUF953: Eukaryotic pr 49.0 33 0.00072 23.6 3.8 64 10-75 34-112 (119)
202 PRK09266 hypothetical protein; 48.5 36 0.00078 26.9 4.5 57 23-80 200-259 (266)
203 TIGR02187 GlrX_arch Glutaredox 48.1 81 0.0018 23.9 6.2 57 5-63 22-88 (215)
204 PHA03075 glutaredoxin-like pro 47.4 43 0.00094 22.9 3.9 68 4-80 3-71 (123)
205 PTZ00051 thioredoxin; Provisio 46.8 74 0.0016 20.2 6.7 57 6-64 22-83 (98)
206 cd02993 PDI_a_APS_reductase PD 46.0 85 0.0018 20.7 6.3 54 5-59 24-83 (109)
207 TIGR01068 thioredoxin thioredo 44.7 79 0.0017 19.9 8.1 55 6-63 18-79 (101)
208 TIGR02681 phage_pRha phage reg 43.0 22 0.00048 24.0 2.1 26 55-80 2-28 (108)
209 cd02957 Phd_like Phosducin (Ph 42.6 82 0.0018 20.9 5.0 57 6-67 28-91 (113)
210 PF12972 NAGLU_C: Alpha-N-acet 42.0 94 0.002 24.7 5.9 69 98-169 99-177 (267)
211 cd02956 ybbN ybbN protein fami 41.3 92 0.002 19.7 7.0 57 6-64 16-78 (96)
212 KOG2501 Thioredoxin, nucleored 39.2 92 0.002 22.6 4.9 36 4-39 33-77 (157)
213 PF09849 DUF2076: Uncharacteri 38.4 2E+02 0.0043 22.7 8.9 79 67-154 5-88 (247)
214 cd04911 ACT_AKiii-YclM-BS_1 AC 37.2 38 0.00083 21.2 2.4 25 13-37 14-38 (76)
215 PF09098 Dehyd-heme_bind: Quin 37.0 22 0.00048 25.9 1.5 14 67-80 55-68 (167)
216 PTZ00102 disulphide isomerase; 36.9 2.5E+02 0.0054 24.1 8.2 72 6-80 53-139 (477)
217 cd02955 SSP411 TRX domain, SSP 36.9 1.4E+02 0.003 20.6 6.4 60 7-68 20-97 (124)
218 cd02959 ERp19 Endoplasmic reti 35.1 1.4E+02 0.0031 20.1 6.3 60 6-66 23-91 (117)
219 PRK14530 adenylate kinase; Pro 34.7 56 0.0012 24.7 3.5 32 1-32 1-32 (215)
220 PF13098 Thioredoxin_2: Thiore 34.2 48 0.0011 21.7 2.8 21 5-25 8-28 (112)
221 TIGR01764 excise DNA binding d 33.5 55 0.0012 17.5 2.6 24 53-76 25-48 (49)
222 TIGR01130 ER_PDI_fam protein d 33.4 2.9E+02 0.0062 23.4 8.0 73 6-80 22-110 (462)
223 COG3019 Predicted metal-bindin 32.8 76 0.0017 22.6 3.5 73 5-79 27-104 (149)
224 cd03006 PDI_a_EFP1_N PDIa fami 32.7 1.4E+02 0.003 20.2 4.8 55 6-63 33-95 (113)
225 TIGR01126 pdi_dom protein disu 32.3 81 0.0018 20.0 3.6 53 5-59 16-74 (102)
226 KOG2233 Alpha-N-acetylglucosam 32.0 3.1E+02 0.0067 24.2 7.5 55 98-155 495-549 (666)
227 cd08200 catalase_peroxidase_2 31.4 1.6E+02 0.0034 23.9 5.5 43 130-174 73-115 (297)
228 cd02987 Phd_like_Phd Phosducin 31.1 2.2E+02 0.0047 21.0 6.7 59 6-67 87-150 (175)
229 PF07728 AAA_5: AAA domain (dy 30.7 1.5E+02 0.0032 20.3 4.9 40 6-45 2-41 (139)
230 COG3150 Predicted esterase [Ge 30.4 56 0.0012 24.2 2.6 32 6-37 3-34 (191)
231 cd02950 TxlA TRX-like protein 29.5 2E+02 0.0044 20.1 6.7 74 6-80 24-111 (142)
232 PF09413 DUF2007: Domain of un 29.0 66 0.0014 19.1 2.5 31 7-37 2-32 (67)
233 cd02994 PDI_a_TMX PDIa family, 28.5 1.6E+02 0.0035 18.7 6.3 57 5-63 19-82 (101)
234 cd02954 DIM1 Dim1 family; Dim1 28.4 2E+02 0.0042 19.6 5.1 58 6-65 18-81 (114)
235 PRK15371 effector protein YopJ 28.3 2.2E+02 0.0047 23.0 5.8 65 126-199 23-87 (287)
236 KOG0190 Protein disulfide isom 28.1 2.6E+02 0.0057 24.6 6.6 73 6-80 46-133 (493)
237 cd02972 DsbA_family DsbA famil 28.1 91 0.002 19.3 3.3 22 6-27 1-22 (98)
238 PF12728 HTH_17: Helix-turn-he 28.0 90 0.0019 17.2 2.8 26 53-78 25-50 (51)
239 PF15608 PELOTA_1: PELOTA RNA 28.0 1.3E+02 0.0028 20.0 3.8 30 6-35 58-87 (100)
240 cd02997 PDI_a_PDIR PDIa family 27.7 1.7E+02 0.0036 18.6 6.7 57 6-63 21-86 (104)
241 PF00004 AAA: ATPase family as 27.6 1.3E+02 0.0028 20.1 4.1 30 6-35 1-30 (132)
242 cd03020 DsbA_DsbC_DsbG DsbA fa 26.4 81 0.0018 23.5 3.1 22 5-26 80-101 (197)
243 cd03024 DsbA_FrnE DsbA family, 26.3 80 0.0017 23.3 3.1 16 6-21 1-16 (201)
244 cd02952 TRP14_like Human TRX-r 26.3 2.2E+02 0.0048 19.5 6.5 57 12-69 38-107 (119)
245 cd01557 BCAT_beta_family BCAT_ 26.1 61 0.0013 25.8 2.5 56 23-79 211-273 (279)
246 cd03004 PDI_a_ERdj5_C PDIa fam 26.0 1.9E+02 0.004 18.6 6.5 53 5-59 22-78 (104)
247 cd02999 PDI_a_ERp44_like PDIa 26.0 1.9E+02 0.0042 18.7 5.8 54 6-62 22-82 (100)
248 cd02996 PDI_a_ERp44 PDIa famil 26.0 1.9E+02 0.0042 18.7 5.4 56 6-63 22-89 (108)
249 PRK13356 aminotransferase; Pro 25.7 87 0.0019 25.0 3.3 55 23-79 221-278 (286)
250 PF09868 DUF2095: Uncharacteri 25.7 67 0.0014 22.0 2.2 65 16-80 24-92 (128)
251 TIGR03759 conj_TIGR03759 integ 25.0 2.1E+02 0.0046 21.7 4.9 42 17-59 148-192 (200)
252 cd00449 PLPDE_IV PyridoxaL 5'- 24.9 81 0.0018 24.5 3.0 55 23-78 196-255 (256)
253 PRK13947 shikimate kinase; Pro 24.8 1.1E+02 0.0023 22.0 3.4 30 5-34 3-32 (171)
254 cd03022 DsbA_HCCA_Iso DsbA fam 24.3 1.2E+02 0.0026 22.1 3.7 32 6-37 1-36 (192)
255 PRK06092 4-amino-4-deoxychoris 24.2 1.1E+02 0.0024 24.0 3.6 55 23-79 208-265 (268)
256 PRK03731 aroL shikimate kinase 24.1 1.2E+02 0.0026 21.7 3.6 33 1-34 1-33 (171)
257 COG3917 NahD 2-hydroxychromene 23.7 3.2E+02 0.007 20.5 11.2 89 3-100 7-103 (203)
258 TIGR02654 circ_KaiB circadian 23.6 1.8E+02 0.0039 18.8 3.8 52 6-59 6-62 (87)
259 PF00731 AIRC: AIR carboxylase 23.3 1.6E+02 0.0034 21.2 3.9 33 12-44 11-43 (150)
260 cd03025 DsbA_FrnE_like DsbA fa 23.0 1.4E+02 0.0029 21.9 3.8 30 6-35 3-38 (193)
261 cd02988 Phd_like_VIAF Phosduci 23.0 3.3E+02 0.0071 20.4 5.9 55 6-67 106-167 (192)
262 COG5515 Uncharacterized conser 22.7 79 0.0017 18.8 1.8 21 6-26 3-27 (70)
263 PRK09301 circadian clock prote 22.6 1.9E+02 0.004 19.4 3.8 53 5-59 8-65 (103)
264 PF14595 Thioredoxin_9: Thiore 22.6 55 0.0012 22.8 1.4 53 5-59 44-102 (129)
265 PRK10877 protein disulfide iso 21.9 70 0.0015 24.8 2.0 22 5-26 110-131 (232)
266 cd03005 PDI_a_ERp46 PDIa famil 21.9 2.2E+02 0.0048 17.9 6.5 57 5-63 19-84 (102)
267 PRK06606 branched-chain amino 21.8 1.1E+02 0.0023 24.8 3.2 54 23-77 228-286 (306)
268 PF10022 DUF2264: Uncharacteri 21.8 2.9E+02 0.0064 23.1 5.7 106 55-170 98-212 (361)
269 PF03421 YopJ: YopJ Serine/Thr 21.5 3.2E+02 0.0069 20.3 5.3 61 129-198 2-62 (177)
270 PF01063 Aminotran_4: Aminotra 21.3 88 0.0019 23.8 2.5 56 22-79 173-231 (231)
271 PRK13949 shikimate kinase; Pro 21.3 1.3E+02 0.0029 21.8 3.3 30 5-34 3-32 (169)
272 PF13728 TraF: F plasmid trans 21.0 1.6E+02 0.0034 22.6 3.8 32 6-37 124-159 (215)
273 TIGR01122 ilvE_I branched-chai 20.9 1.2E+02 0.0026 24.4 3.2 42 23-65 220-264 (298)
274 PRK07544 branched-chain amino 20.9 1.3E+02 0.0027 24.2 3.4 55 23-79 225-282 (292)
275 cd02985 TRX_CDSP32 TRX family, 20.2 2.6E+02 0.0056 18.1 6.5 59 6-65 19-84 (103)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-40 Score=244.76 Aligned_cols=215 Identities=53% Similarity=0.885 Sum_probs=191.3
Q ss_pred CCeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhCCCC
Q 041305 4 SDVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSG 83 (225)
Q Consensus 4 ~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~~~~ 83 (225)
+.++||++-.|||++|++++|.++||+|+.+.+|+..+++++++.||-+++||||+++|..|+||..|++||++.+++ +
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~-~ 86 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPS-G 86 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccC-C
Confidence 569999999999999999999999999999999998899999999965599999999999999999999999999994 5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHH
Q 041305 84 PSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIA 163 (225)
Q Consensus 84 ~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~ 163 (225)
++++|.||-++++++.|.++++..+...........+.+..+...+.+.+.|..||+.|.+ +++|++|+++++.|++
T Consensus 87 ~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k---~k~~fgG~~~G~vDi~ 163 (231)
T KOG0406|consen 87 PPILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGK---GKDFFGGETIGFVDIA 163 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCCcCHhhhh
Confidence 8999999999999999999999877666666555556677888899999999999999995 7899999999999999
Q ss_pred HHhhHhhHhhH-hhhccccccCcCcchHHHHHHHHHhccccccccCCChHHHHHHhhcCC
Q 041305 164 FGSYLGWLRVT-EKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAELKASAP 222 (225)
Q Consensus 164 l~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 222 (225)
+++.+.++... ....+...+...++|+|.+|.++|.+++++++++++.+...+++++.+
T Consensus 164 ~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~ 223 (231)
T KOG0406|consen 164 IGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYR 223 (231)
T ss_pred HHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHH
Confidence 99777655544 444445666678999999999999999999999999999999887654
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=3.1e-38 Score=241.53 Aligned_cols=199 Identities=23% Similarity=0.366 Sum_probs=169.4
Q ss_pred CCeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhCCCC
Q 041305 4 SDVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSG 83 (225)
Q Consensus 4 ~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~~~~ 83 (225)
++|+||+++.||+|++++++|+++|++|+.+.++...+++++++.||. |+||+|+++|.+|+||.+|++||++.++ +
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~--~ 85 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFP--H 85 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCC--C
Confidence 358999999999999999999999999999999988888899999999 9999999999999999999999999998 6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHH
Q 041305 84 PSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIA 163 (225)
Q Consensus 84 ~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~ 163 (225)
..|+|.++.+++.+++|+.++...+........ ...+...+...+.+.+.+..+|+.|+ +++|++|+++|+||++
T Consensus 86 ~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~le~~L~----~~~~l~G~~~t~AD~~ 160 (211)
T PRK09481 86 PPLMPVYPVARGESRLMMHRIEKDWYSLMNKIV-NGSASEADAARKQLREELLAIAPVFG----EKPYFMSEEFSLVDCY 160 (211)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHhc----cCCcccCCCccHHHHH
Confidence 789999999999999999887665544333222 23344556777889999999999998 6899999999999999
Q ss_pred HHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCChHHHH
Q 041305 164 FGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLA 215 (225)
Q Consensus 164 l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~ 215 (225)
+++.+.++... +.++. ...+|+|.+|++++.++|+++++++..+...
T Consensus 161 l~~~~~~~~~~----~~~~~-~~~~p~l~~w~~~~~~rp~~~~~~~~~~~~~ 207 (211)
T PRK09481 161 LAPLLWRLPVL----GIELS-GPGAKELKGYMTRVFERDSFLASLTEAEREM 207 (211)
T ss_pred HHHHHHHHHhc----CCCCC-CCCChhHHHHHHHHhccHHHHHHcCHHHHHH
Confidence 99998776543 33432 2569999999999999999999998766544
No 3
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=1.5e-35 Score=227.20 Aligned_cols=196 Identities=22% Similarity=0.293 Sum_probs=160.1
Q ss_pred CCCCCeEEeccC--CChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHH
Q 041305 1 MAKSDVKVLGFS--PSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYV 75 (225)
Q Consensus 1 M~~~~~~L~~~~--~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL 75 (225)
||.++++||+++ .|++|++++++|+++||+|+.+.++.. ...+++++.||. |+||+|++||.+|+||.+|++||
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHH
Confidence 787889999976 799999999999999999999999875 356889999999 99999999999999999999999
Q ss_pred HHhhCCCCCC---CCCCCHHHHHHHHHHHHHhhhHhhhhhhh-----hccc-CCHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 041305 76 DEAWSSSGPS---ILPSDPYDRAVARFWAAYVDEKWFSALRD-----IGSA-NGAEAKKAAIEQLIEVLVLLEDAFVKCS 146 (225)
Q Consensus 76 ~~~~~~~~~~---l~p~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~ 146 (225)
++.++ ++. ++|.++.+++++++|+.+.+..+...... .+.. ......+...+.+.+.++.+|+.|+.
T Consensus 80 ~~~~~--~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-- 155 (214)
T PRK15113 80 EERFA--PPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAP-- 155 (214)
T ss_pred HHHcC--CCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhc--
Confidence 99998 544 99999999999999999887655532211 1111 12333455677789999999999973
Q ss_pred CCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCChH
Q 041305 147 KGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETD 212 (225)
Q Consensus 147 ~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 212 (225)
+++|++|+ +|+||+++++.+.++... +..+ .|+|.+|++++.++|+++++.+...
T Consensus 156 -~~~~l~G~-~TlADi~l~~~l~~~~~~----~~~~-----~p~l~~~~~r~~~rp~~~~~~~~~~ 210 (214)
T PRK15113 156 -GQPNLFGE-WCIADTDLALMLNRLVLH----GDEV-----PERLADYATFQWQRASVQRWLALSA 210 (214)
T ss_pred -CCCEeeCC-ccHHHHHHHHHHHHHHHc----CCCC-----CHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 35799996 999999999999876532 3222 2999999999999999998776543
No 4
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=1.8e-35 Score=226.91 Aligned_cols=195 Identities=18% Similarity=0.306 Sum_probs=159.3
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhCCC
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSS 82 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~~~ 82 (225)
|+||+++.|++++|++++|+++|++|+.+.++.. ..++++++.||. |+||+|++||.+|+||.+|++||++.++.+
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 8999999999999999999999999999998865 467889999999 999999999999999999999999999732
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhHhhhhhh-----hhcc---c--CCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccc
Q 041305 83 GPSILPSDPYDRAVARFWAAYVDEKWFSALR-----DIGS---A--NGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFF 152 (225)
Q Consensus 83 ~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~---~--~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l 152 (225)
...|+|.++.+++++++|+.+..+.+..... ..+. + ......++....+.+.+..+|+.|+ +++|+
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~----~~~~l 157 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLA----TNRYL 157 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhc----cCCcc
Confidence 3368999999999999999888775543221 1111 1 1234456677889999999999998 67899
Q ss_pred cCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCC
Q 041305 153 GGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMP 209 (225)
Q Consensus 153 ~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 209 (225)
+|+++|+||+++++.+.++...... ..++ +.+|+|.+|++++.++|++++++.
T Consensus 158 ~Gd~~t~ADi~~~~~~~~~~~~~~~--~~~~--~~~P~l~~w~~~~~~~p~~~~~~~ 210 (214)
T PLN02473 158 GGDEFTLADLTHMPGMRYIMNETSL--SGLV--TSRENLNRWWNEISARPAWKKLME 210 (214)
T ss_pred cCCCCCHHHHHHHHHHHHHHhcccc--HHHH--hcCHHHHHHHHHHhcChhhHHHHH
Confidence 9999999999999998876532111 1222 679999999999999999998654
No 5
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=2.4e-34 Score=220.81 Aligned_cols=195 Identities=23% Similarity=0.337 Sum_probs=156.5
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhCCC
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSS 82 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~~~ 82 (225)
++||+.+.| +++|++++|+++|++|+.+.++.. ..++++++.||. |+||+|+++|.+|+||.+|++||++.++..
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHHcCCC
Confidence 899997654 799999999999999999998875 456889999999 999999999999999999999999999732
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhHhhhhhhhh----c------ccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccc
Q 041305 83 GPSILPSDPYDRAVARFWAAYVDEKWFSALRDI----G------SANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFF 152 (225)
Q Consensus 83 ~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~----~------~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l 152 (225)
.+.++|.++.+++++++|+.+.+..+.+.+... . ...+.+..+...+.+.+.+..||+.|+ +++|+
T Consensus 81 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~----~~~~l 156 (215)
T PLN02395 81 GPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLS----KSKYL 156 (215)
T ss_pred CcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhc----CCccc
Confidence 246999999999999999998776554332211 1 112334456678889999999999998 67899
Q ss_pred cCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCC
Q 041305 153 GGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPE 210 (225)
Q Consensus 153 ~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 210 (225)
+|+++|+||+++++++.++.... .....+ ..+|+|.+|++++.++|++++++..
T Consensus 157 ~G~~~s~ADi~l~~~~~~~~~~~--~~~~~~--~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 157 AGDFVSLADLAHLPFTEYLVGPI--GKAYLI--KDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred cCCCcCHHHHHHHHHHHHHhccc--chhhhh--ccCchHHHHHHHHHcChHHHHHHHH
Confidence 99999999999999887764310 011122 5689999999999999999987543
No 6
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=3.1e-34 Score=219.41 Aligned_cols=193 Identities=25% Similarity=0.324 Sum_probs=157.2
Q ss_pred EEeccCCChHHHHHHHHHHhhCCcceEEEccCC----CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhCCC
Q 041305 7 KVLGFSPSPFVMRARIALKIKSVEYEFLEENLG----SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSS 82 (225)
Q Consensus 7 ~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~~~ 82 (225)
+||++..||+|++++++|.++||+|+.+.++.. ...+++.++||. |++|+|+++|.+|+||.+|++||++.++
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~-- 77 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYP-- 77 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCC--
Confidence 589999999999999999999999999998863 246788999999 9999999999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhHhhhh----hhhhccc---CC-HHHHHHHHHHHHHHHHHHHHHhhhccCCCccccC
Q 041305 83 GPSILPSDPYDRAVARFWAAYVDEKWFSA----LRDIGSA---NG-AEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGG 154 (225)
Q Consensus 83 ~~~l~p~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~---~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G 154 (225)
...++|.++.+++.+++|+.+....+... +..+... .. ....+...+.+.+.+..||++|+.+ +++||+|
T Consensus 78 ~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~~~l~G 155 (210)
T TIGR01262 78 DPPLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPH--AGAFCVG 155 (210)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCEeeC
Confidence 66799999999999999998876544321 1112211 12 2223445667999999999999853 3679999
Q ss_pred CCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCCh
Q 041305 155 NQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPET 211 (225)
Q Consensus 155 ~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 211 (225)
+++|+||+++++.+.++... +..+ ..||+|++|+++|.++|++++++.+.
T Consensus 156 ~~~T~ADi~~~~~l~~~~~~----~~~~---~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 156 DTPTLADLCLVPQVYNAERF----GVDL---TPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred CCCCHHHHHHHHHHHHHHHc----CCCc---ccchHHHHHHHHHhcCHHHHHhCccc
Confidence 99999999999998876532 2222 67999999999999999999988754
No 7
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=1.4e-34 Score=219.95 Aligned_cols=190 Identities=16% Similarity=0.319 Sum_probs=157.0
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCC----CchHHHhhCCCCCccceEE-eCCeeehhhHHHHHHHHHhhC
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGS----KSELLLKSNPVHKKIPVLI-HNDKPVCESLIIVEYVDEAWS 80 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~----~~~~~~~~~p~~g~vP~L~-~~g~~l~~S~~I~~yL~~~~~ 80 (225)
|+||+++.| ++++++++|+++||+|+.+.++... .++++.+.||. |+||+|+ +||.+|+||.+|++||++.++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 589999866 7999999999999999999998752 44789999999 9999998 688999999999999999998
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHHHhhhHhhhhhhhhcccCCHH-HHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCC
Q 041305 81 SSGPSIL-PSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAE-AKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIG 158 (225)
Q Consensus 81 ~~~~~l~-p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t 158 (225)
++.++ |.++.+++++++|+.+..+.+...+...+....++ ..+.....+.+.+..+|+.|+ +++||+|+++|
T Consensus 79 --~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~----~~~~l~G~~~s 152 (201)
T PRK10542 79 --DRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALA----DEQWICGQRFT 152 (201)
T ss_pred --ccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhc----CCCeeeCCCCc
Confidence 55655 66788999999999988776666544444333222 235567789999999999998 67899999999
Q ss_pred hhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCC
Q 041305 159 FLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPE 210 (225)
Q Consensus 159 ~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 210 (225)
+||+++++++.++... +..+ ..+|+|.+|++++.++|++++++..
T Consensus 153 ~ADi~l~~~~~~~~~~----~~~~---~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 153 IADAYLFTVLRWAYAV----KLNL---EGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred HHhHHHHHHHHHhhcc----CCCc---ccchHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999998877543 3332 6799999999999999999987644
No 8
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=2.5e-34 Score=220.66 Aligned_cols=188 Identities=17% Similarity=0.242 Sum_probs=151.8
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEe-----CC--eeehhhHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIH-----ND--KPVCESLIIVEYV 75 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~-----~g--~~l~~S~~I~~yL 75 (225)
++||+.+ +++|++|+++|+++|++|+.+.+++. ...++++++||. |+||+|++ || .+|+||.+|++||
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 7999887 78999999999999999999999875 246889999999 99999996 45 4799999999999
Q ss_pred HHhhCCCCCCCCCCCHHHHHHHHHHHHHhhhHhhhhhhhh--ccc----CCHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 041305 76 DEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDI--GSA----NGAEAKKAAIEQLIEVLVLLEDAFVKCSKGK 149 (225)
Q Consensus 76 ~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~----~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~ 149 (225)
++.++ .+.|.++.+++++++|+.+....+.+..... +.. ..+...+.....+.+.+..+|+.|. ++
T Consensus 80 ~~~~~----~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~----~~ 151 (215)
T PRK13972 80 AEKTG----LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLE----NS 151 (215)
T ss_pred HHhcC----CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhc----cC
Confidence 99987 3778889999999999998877665443221 111 1234455667788999999999998 67
Q ss_pred ccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCC
Q 041305 150 AFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPE 210 (225)
Q Consensus 150 ~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 210 (225)
+|++|+++|+||+++++.+...... +.. ...+|+|.+|++++.++|++++++..
T Consensus 152 ~~l~Gd~~t~ADi~l~~~~~~~~~~----~~~---~~~~P~l~~w~~r~~~rp~~~~~~~~ 205 (215)
T PRK13972 152 PWLGGENYSIADIACWPWVNAWTRQ----RID---LAMYPAVKNWHERIRSRPATGQALLK 205 (215)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhhc----CCc---chhCHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999999999999998877543321 222 26799999999999999999876543
No 9
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=1.4e-33 Score=214.61 Aligned_cols=193 Identities=24% Similarity=0.342 Sum_probs=157.0
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEE-eCCeeehhhHHHHHHHHHhhCCCCC
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI-HNDKPVCESLIIVEYVDEAWSSSGP 84 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~~S~~I~~yL~~~~~~~~~ 84 (225)
++||+++.||++++|+++|+++|++|+.+.++.....+++.+.||. |+||+|+ ++|.+|+||.+|++||++.++ ++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~--~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNV--AP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCC--CC
Confidence 5899999999999999999999999999998877666778889999 9999998 788999999999999999987 66
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhHhhhhhhhhc---c---cCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCC
Q 041305 85 SILPSDPYDRAVARFWAAYVDEKWFSALRDIG---S---ANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIG 158 (225)
Q Consensus 85 ~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~---~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t 158 (225)
.|+|.++.+++.+++|..+..+.+........ . .......+.....+.+.+..+|+.|. +++ ++|+++|
T Consensus 78 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~----~~~-l~Gd~~t 152 (202)
T PRK10357 78 AMLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLV----DGT-LKTDTVN 152 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhc----cCc-ccCCCcC
Confidence 79999999999999998876664433321111 1 11233445667889999999999998 566 9999999
Q ss_pred hhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCC
Q 041305 159 FLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPE 210 (225)
Q Consensus 159 ~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 210 (225)
+||+++++.+.++..... +..+ ...+|+|.+|++++.++|+|+++.+.
T Consensus 153 ~ADi~l~~~l~~~~~~~~--~~~~--~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 153 LATIAIACAVGYLNFRRV--APGW--CVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHHHHHHHhccc--Ccch--hhcChHHHHHHHHHhcChhhhhcCCC
Confidence 999999999987754211 1122 25699999999999999999998765
No 10
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-34 Score=201.98 Aligned_cols=200 Identities=22% Similarity=0.330 Sum_probs=170.1
Q ss_pred CCCCCeEEeccCCChHHHHHHHHHHhhCCcceEEEccCC----CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 1 MAKSDVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG----SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 1 M~~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~----~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
|++.+++||.+=.|..++|||++|+.+||+|+.+.+++. +...+|.+.||+ ++||+|+.||.+|+||.||++||+
T Consensus 1 ~~~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLe 79 (217)
T KOG0868|consen 1 SSAAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLE 79 (217)
T ss_pred CCcccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHH
Confidence 455789999888888999999999999999999999876 345678999999 999999999999999999999999
Q ss_pred HhhCCCCCCCCCCCHHHHHHHHHHHHHhhhHhhhh----hhhhcccC-CHHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Q 041305 77 EAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSA----LRDIGSAN-GAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAF 151 (225)
Q Consensus 77 ~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~ 151 (225)
+.+| ++.|+|.++..|+.++++...+...+.+. +.+++..+ .......+...+.+-+..||..|..+ .+.|
T Consensus 80 Et~P--~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~--aGky 155 (217)
T KOG0868|consen 80 ETYP--DPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSH--AGKY 155 (217)
T ss_pred hcCC--CCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHc--cCCc
Confidence 9999 89999999999999999999888766532 22233222 22224556777889999999999988 8999
Q ss_pred ccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCChH
Q 041305 152 FGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETD 212 (225)
Q Consensus 152 l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 212 (225)
.+||++|+||+++.+.+...+.. .+++ ..||.+.+..+.+...|.|+...++++
T Consensus 156 cvGDevtiADl~L~pqv~nA~rf----~vdl---~PYPti~ri~e~l~elpaFq~ahP~nQ 209 (217)
T KOG0868|consen 156 CVGDEVTIADLCLPPQVYNANRF----HVDL---TPYPTITRINEELAELPAFQAAHPDNQ 209 (217)
T ss_pred ccCceeehhhhccchhhhhhhhc----cccC---CcCchHHHHHHHHHhCHHHHhcCCCCC
Confidence 99999999999999999988543 3444 789999999999999999999887754
No 11
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=3e-33 Score=214.65 Aligned_cols=201 Identities=18% Similarity=0.285 Sum_probs=160.9
Q ss_pred cCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhCCC-CCCCCCC
Q 041305 11 FSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSS-GPSILPS 89 (225)
Q Consensus 11 ~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~~~-~~~l~p~ 89 (225)
.+.||+|++++++|.++|++|+.+.+++..+++++++.||. |+||+|+++|.+|+||.+|++||++.++.+ .+.+.|.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~ 94 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPK 94 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCC
Confidence 46899999999999999999999999998888999999999 999999999999999999999999999721 1446666
Q ss_pred CHHHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhc--------------cCCCccccCC
Q 041305 90 DPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKC--------------SKGKAFFGGN 155 (225)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--------------~~~~~~l~G~ 155 (225)
++..++... + ++..+..++.+..+...+...+.+.+.+..||+.|... ..+++|+.|+
T Consensus 95 ~~~~~~~~~---~-----l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd 166 (236)
T TIGR00862 95 HPESNTAGL---D-----IFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGD 166 (236)
T ss_pred CHHHHHHHH---H-----HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCC
Confidence 655444221 1 22222222223334445566677999999999999731 0147999999
Q ss_pred CCChhHHHHHhhHhhHhhH-hhhccccccCcCcchHHHHHHHHHhccccccccCCChHHHHHHhhcCC
Q 041305 156 QIGFLDIAFGSYLGWLRVT-EKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAELKASAP 222 (225)
Q Consensus 156 ~~t~AD~~l~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 222 (225)
++|+|||++++.+.++... ....++++ ...+|+|.+|++++.++|+|+++++..++++..|.++.
T Consensus 167 ~~tlaD~~l~p~l~~l~~~~~~~~~~~i--~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~~ 232 (236)
T TIGR00862 167 ELTLADCNLLPKLHIVKVVAKKYRNFDI--PAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADVA 232 (236)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhCcCc--cccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHHh
Confidence 9999999999999999864 34556665 37899999999999999999999999999999998764
No 12
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=216.09 Aligned_cols=186 Identities=30% Similarity=0.507 Sum_probs=159.3
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC--CCchHHHhhCCCCCccceEEeCCe-eehhhHHHHHHHHHhhCCC
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG--SKSELLLKSNPVHKKIPVLIHNDK-PVCESLIIVEYVDEAWSSS 82 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~--~~~~~~~~~~p~~g~vP~L~~~g~-~l~~S~~I~~yL~~~~~~~ 82 (225)
++||+.+.||+|++++++|.++|++|+.+.++.. ..+++++..||. |+||+|++++. +|+||.+|++||+++++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~-- 77 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYP-- 77 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCC--
Confidence 5899999999999999999999999999999987 478899999999 99999996654 89999999999999999
Q ss_pred CCCCCCCCHH---HHHHHHHHHHHhhhHhhhhhhhhcccC-------CHHHHHHHHHHHHHHHHHHHHHhhhccCCCccc
Q 041305 83 GPSILPSDPY---DRAVARFWAAYVDEKWFSALRDIGSAN-------GAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFF 152 (225)
Q Consensus 83 ~~~l~p~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l 152 (225)
++.++|.++. +++.+..|+.+....+.+.+....... .....+.....+.+.+..+|..|+ +++|+
T Consensus 78 ~~~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~----~~~~l 153 (211)
T COG0625 78 GPPLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLA----DGPYL 153 (211)
T ss_pred CCCcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhc----cCCcc
Confidence 5559998875 778888999988777766655443322 345567788899999999999999 68999
Q ss_pred cCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhcccccc
Q 041305 153 GGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVK 205 (225)
Q Consensus 153 ~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 205 (225)
+|+++|+||+++++.+.++... +..+ ..+|++.+|++++.++|+++
T Consensus 154 ~G~~~tiAD~~~~~~~~~~~~~----~~~~---~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 154 AGDRFTIADIALAPLLWRLALL----GEEL---ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred cCCCCCHHHHHHHHHHHHhhhc----Cccc---ccChHHHHHHHHHHcCCchh
Confidence 9999999999999999986653 3333 67999999999999999965
No 13
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=1.3e-32 Score=216.54 Aligned_cols=197 Identities=20% Similarity=0.252 Sum_probs=153.4
Q ss_pred CeEEeccCCChHHHHHHHHHHhh------CCcceEEEccCC---CCchHHHhhCCCCCccceEEeC----CeeehhhHHH
Q 041305 5 DVKVLGFSPSPFVMRARIALKIK------SVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHN----DKPVCESLII 71 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~------gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~----g~~l~~S~~I 71 (225)
.|+||+.+ ||+|++|+++|+++ |++|+.+.++.. ...++++++||. |+||+|+++ |.+|+||.+|
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHHH
Confidence 68999975 99999999999997 899999998875 356889999999 999999954 3689999999
Q ss_pred HHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHhhhHhhhh---hhhhc-c-c-CCHHHHHHHHHHHHHHHHHHHHHhhhc
Q 041305 72 VEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSA---LRDIG-S-A-NGAEAKKAAIEQLIEVLVLLEDAFVKC 145 (225)
Q Consensus 72 ~~yL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~---~~~~~-~-~-~~~~~~~~~~~~~~~~l~~le~~L~~~ 145 (225)
++||++.++ .|+|.++.+++++++|+.+....+... ....+ . . ......++....+.+.|+.+|++|+
T Consensus 122 l~YL~~~~~----~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~-- 195 (264)
T PRK11752 122 LLYLAEKFG----AFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLA-- 195 (264)
T ss_pred HHHHHHhcC----CcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhc--
Confidence 999999997 399999999999999998876543111 11111 1 1 1233445667778999999999998
Q ss_pred cCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCCh
Q 041305 146 SKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPET 211 (225)
Q Consensus 146 ~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 211 (225)
+++||+|+++|+|||++++.+.++.....+......+...+|+|.+|++++.++|++++++..+
T Consensus 196 --~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~ 259 (264)
T PRK11752 196 --EHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVN 259 (264)
T ss_pred --cCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcc
Confidence 6789999999999999999887664321001111122367999999999999999999876554
No 14
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=3.5e-32 Score=207.15 Aligned_cols=193 Identities=16% Similarity=0.184 Sum_probs=143.5
Q ss_pred CCCCCeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHH--------hhCCCCCccceEEeCCeeehhhHHHH
Q 041305 1 MAKSDVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLL--------KSNPVHKKIPVLIHNDKPVCESLIIV 72 (225)
Q Consensus 1 M~~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~--------~~~p~~g~vP~L~~~g~~l~~S~~I~ 72 (225)
|+ ++++|||++.+++++++|++|+++|++|+.+.++. .. ++++ ..||+ |+||+|++||.+|+||.||+
T Consensus 1 m~-~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~ 76 (205)
T PTZ00057 1 MA-EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NG-DAFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIV 76 (205)
T ss_pred CC-CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cc-hHHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHH
Confidence 77 56999999999999999999999999999997753 22 2332 47999 99999999999999999999
Q ss_pred HHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccc
Q 041305 73 EYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFF 152 (225)
Q Consensus 73 ~yL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l 152 (225)
+||++.++ +.+.+..+++.++.+.....+ +......... ......+.....+.+.+..||+.|+++ +++|+
T Consensus 77 ~YLa~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~--~~~~l 147 (205)
T PTZ00057 77 RYLSKKYK-----ICGESELNEFYADMIFCGVQD-IHYKFNNTNL-FKQNETTFLNEELPKWSGYFENILKKN--HCNYF 147 (205)
T ss_pred HHHHHHcC-----CCCCCHHHHHHHHHHHHHHHH-HHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCee
Confidence 99999998 445555455444443332222 2211111100 012223445678899999999999853 35899
Q ss_pred cCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCChH
Q 041305 153 GGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETD 212 (225)
Q Consensus 153 ~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 212 (225)
+|+++|+||+++++.+.++... .+..+ ..||+|.+|++++.++|+++++++++.
T Consensus 148 ~Gd~~T~AD~~l~~~~~~~~~~---~~~~l---~~~P~l~~~~~r~~~~P~~k~y~~~~~ 201 (205)
T PTZ00057 148 VGDNLTYADLAVFNLYDDIETK---YPNSL---KNFPLLKAHNEFISNLPNIKNYISNRK 201 (205)
T ss_pred eCCcccHHHHHHHHHHHHHHHh---Chhhh---ccChhHHHHHHHHHhChHHHHHHHhCC
Confidence 9999999999999988876532 12223 679999999999999999999876543
No 15
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=2.7e-31 Score=203.33 Aligned_cols=192 Identities=21% Similarity=0.295 Sum_probs=148.3
Q ss_pred ccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhCCCCCCCCCC
Q 041305 10 GFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPS 89 (225)
Q Consensus 10 ~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~~~~~~l~p~ 89 (225)
.+..||||+|++++|+++|++|+.+.+++..+++++++.||. |+||+|++||.+|+||.+|++||++.++ +..+.
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~--~~~l~-- 90 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYP--DPPLK-- 90 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCC--CCCCC--
Confidence 345699999999999999999999999998888899999999 9999999999999999999999999998 54453
Q ss_pred CHHHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHh
Q 041305 90 DPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLG 169 (225)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~ 169 (225)
++.+++.+...+. ..+..++.... ..+.....+.+.++.+|+.|... +++|++|+++|+||+++++.+.
T Consensus 91 ~~~~~a~i~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~l~~le~~L~~~--~~~fl~Gd~~T~ADi~l~~~~~ 159 (213)
T PLN02378 91 TPAEFASVGSNIF-------GTFGTFLKSKD--SNDGSEHALLVELEALENHLKSH--DGPFIAGERVSAVDLSLAPKLY 159 (213)
T ss_pred CHHHHHHHHHHHH-------HHHHHHHhcCC--hhhHHHHHHHHHHHHHHHHHhcC--CCCCcCCCCCchhhHHHHHHHH
Confidence 5566666554321 11222222211 11233467778899999999743 4789999999999999999988
Q ss_pred hHhhH-hhhccccccCcCcchHHHHHHHHHhccccccccCCChHHHHHHhh
Q 041305 170 WLRVT-EKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAELKA 219 (225)
Q Consensus 170 ~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 219 (225)
++... ....+... ...+|+|.+|++++.++|++++++......+..+.
T Consensus 160 ~l~~~~~~~~~~~~--~~~~p~l~~w~~~~~~rpa~~~~~~~~~~~~~~~~ 208 (213)
T PLN02378 160 HLQVALGHFKSWSV--PESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWA 208 (213)
T ss_pred HHHHHHHHhcCCCc--hhHhHHHHHHHHHHhcCCCeecccCChHHHHHHHH
Confidence 77543 21222222 26799999999999999999999988877766544
No 16
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=100.00 E-value=4.2e-31 Score=207.06 Aligned_cols=191 Identities=18% Similarity=0.276 Sum_probs=151.6
Q ss_pred CCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhCCCCCCCCCCCH
Q 041305 12 SPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDP 91 (225)
Q Consensus 12 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~~~~~~l~p~~~ 91 (225)
..||+|++++++|+++|++|+.+.+++..++++++++||. |+||+|+++|.+|+||.+|++||++.++ ++.+. ++
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p--~~~L~--~~ 145 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYP--DPPLA--TP 145 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCC--CCCCC--CH
Confidence 3599999999999999999999999988888999999999 9999999888899999999999999999 55554 56
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhH
Q 041305 92 YDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWL 171 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~ 171 (225)
.+++.+.+++.. .+ ..++....+. +.....+.+.+..||+.|.. +++|++|+++|+||+++++.+.++
T Consensus 146 ~era~i~~~l~~---~~----~~~~~~~~~~--~~~~~~l~~~l~~LE~~L~~---~g~yl~Gd~~SlADi~l~p~L~~l 213 (265)
T PLN02817 146 PEKASVGSKIFS---TF----IGFLKSKDPG--DGTEQALLDELTSFDDYIKE---NGPFINGEKISAADLSLGPKLYHL 213 (265)
T ss_pred HHHHHHHHHHHH---HH----HHHhccCCcc--hHHHHHHHHHHHHHHHHHhc---CCCeeCCCCCCHHHHHHHHHHHHH
Confidence 778887765421 11 1222222221 12235677889999999984 479999999999999999999877
Q ss_pred hhH-hhhccccccCcCcchHHHHHHHHHhccccccccCCChHHHHHHhhcC
Q 041305 172 RVT-EKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAELKASA 221 (225)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 221 (225)
... ....++++ ...+|+|.+|++++.++|+|+++++..++..+.++..
T Consensus 214 ~~~~~~~~~~~i--~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~~~~~~ 262 (265)
T PLN02817 214 EIALGHYKNWSV--PDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWRPK 262 (265)
T ss_pred HHHHHHhcCCCc--cccCHHHHHHHHHHhcchhHhhcCCCHHHHHHHhHhh
Confidence 653 11223333 2679999999999999999999999998888877653
No 17
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.2e-30 Score=196.69 Aligned_cols=196 Identities=26% Similarity=0.317 Sum_probs=167.1
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhCC
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSS 81 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~~ 81 (225)
.++||+++.|+.++++.+++.++|++|+.+.++.. +.+++|++.||. |+||+|+++|..++||.||+.||.+.|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~- 79 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYG- 79 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcC-
Confidence 38999999999999999999999999999988765 788999999999 9999999999999999999999999997
Q ss_pred CCCC-CCCCCHHHHHHHHHHHHHhhhHhhhhh--hhhcc----c--CCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccc
Q 041305 82 SGPS-ILPSDPYDRAVARFWAAYVDEKWFSAL--RDIGS----A--NGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFF 152 (225)
Q Consensus 82 ~~~~-l~p~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~----~--~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l 152 (225)
.... ++|.++.+++.+++|+.+..+.+.... ...+. . .+....++....+.+.+..+|..|. ++.|+
T Consensus 80 ~~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~----~~~yl 155 (226)
T KOG0867|consen 80 PLGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLK----TQVYL 155 (226)
T ss_pred CCCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHc----cCCcc
Confidence 3444 999999999999999999988877663 22221 1 2566778889999999999999999 68999
Q ss_pred cCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCC
Q 041305 153 GGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPE 210 (225)
Q Consensus 153 ~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 210 (225)
.|+++|+||+.+.+.+..+... .. +. ....++|++.+|++++.++|++++....
T Consensus 156 ~g~~~tlADl~~~~~~~~~~~~-~~-~~--~~~~~~p~v~~W~~~~~~~P~~~e~~~~ 209 (226)
T KOG0867|consen 156 AGDQLTLADLSLASTLSQFQGK-FA-TE--KDFEKYPKVARWYERIQKRPAYEEANEK 209 (226)
T ss_pred cCCcccHHHHHHhhHHHHHhHh-hh-hh--hhhhhChHHHHHHHHHHhCccHHHHHHH
Confidence 9999999999999999987421 11 11 2247899999999999999998876543
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.97 E-value=5.8e-30 Score=195.78 Aligned_cols=180 Identities=18% Similarity=0.201 Sum_probs=138.6
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEE-eCCeeehhhHHHHHHHHHhhCCCCC
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI-HNDKPVCESLIIVEYVDEAWSSSGP 84 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~~S~~I~~yL~~~~~~~~~ 84 (225)
|+||+++.||+|+|++++|+++|++|+.+.++..... .....||. |+||+|+ +||..|+||.+|++||++.++ .+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~--~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA-TPIRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDG--KP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hHHHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCC--Cc
Confidence 6899999999999999999999999999988654322 22578998 9999995 889999999999999999998 54
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhHhhhhhhhhcccC------CHH---------------------HHHHHHHHHHHHHHH
Q 041305 85 SILPSDPYDRAVARFWAAYVDEKWFSALRDIGSAN------GAE---------------------AKKAAIEQLIEVLVL 137 (225)
Q Consensus 85 ~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~---------------------~~~~~~~~~~~~l~~ 137 (225)
.+.+ .+++.+++|+.+....+...+...+... ... ..++..+.+.+.|+.
T Consensus 77 ~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (210)
T PRK10387 77 LLTG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRA 153 (210)
T ss_pred cCCC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHH
Confidence 4532 2567888888877655443332221100 000 013456788899999
Q ss_pred HHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhcccccc
Q 041305 138 LEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVK 205 (225)
Q Consensus 138 le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 205 (225)
+|+.|+ + +|++|+++|+||+++++.+.++... .+. ..+|+|.+|++|+.++|++.
T Consensus 154 le~~L~----~-~~l~G~~~s~ADi~l~~~l~~~~~~---~~~-----~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 154 LDPLIV----K-PNAVNGELSTDDIHLFPILRNLTLV---KGI-----EWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HHHHhc----C-ccccCCCCCHHHHHHHHHHhcceee---cCC-----CCCHHHHHHHHHHHHHhCCC
Confidence 999997 5 9999999999999999999988753 122 23699999999999999864
No 19
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.8e-29 Score=184.48 Aligned_cols=194 Identities=16% Similarity=0.198 Sum_probs=158.6
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhCCCCC
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGP 84 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~~~~~ 84 (225)
.++|+|++.++++..+|+++++.|++||++++...+.-..+....|+ |++|+|..||..|.||.||++||++.++
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~g---- 77 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFG---- 77 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhC----
Confidence 39999999999999999999999999999999875532223445798 9999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhHhhhhhhhhccc----CCHHHHH-HHHHHHHHHHHHHHHHhhhccCCCccccCCCCCh
Q 041305 85 SILPSDPYDRAVARFWAAYVDEKWFSALRDIGSA----NGAEAKK-AAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGF 159 (225)
Q Consensus 85 ~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~-~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~ 159 (225)
+.|.++.++++++.+.+...+.....+...+.. ......+ .......+.+..++..|.++ +++||+|+++|+
T Consensus 78 -l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~--~sgflvGd~lT~ 154 (206)
T KOG1695|consen 78 -LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKN--KSGFLVGDKLTW 154 (206)
T ss_pred -cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhC--CCCeeecCcccH
Confidence 999999999999999998888444433333322 2222222 55677888999999999977 678999999999
Q ss_pred hHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCCh
Q 041305 160 LDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPET 211 (225)
Q Consensus 160 AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 211 (225)
||+.++..+..+... ..... ...+|+|.++.+++.++|.+++++..+
T Consensus 155 aDl~i~e~l~~l~~~---~~~~~--~~~~P~L~a~~~kv~~~p~ik~~i~~r 201 (206)
T KOG1695|consen 155 ADLVIAEHLDTLEEL---LDPSA--LDHFPKLKAFKERVSSIPNIKKYLESR 201 (206)
T ss_pred HHHHHHHHHHHHHHh---cCchh--hccChHHHHHHHHHhcCchHHHHHhcC
Confidence 999999999988763 12233 266899999999999999999887654
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=6.2e-28 Score=184.14 Aligned_cols=178 Identities=20% Similarity=0.225 Sum_probs=133.2
Q ss_pred EEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEE-eCCeeehhhHHHHHHHHHhhCCCCCC
Q 041305 7 KVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI-HNDKPVCESLIIVEYVDEAWSSSGPS 85 (225)
Q Consensus 7 ~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~~S~~I~~yL~~~~~~~~~~ 85 (225)
+||++..||+|+||+++|.++|++|+.+.++.... ....+.||. |++|+|+ +||..++||.+|++||++.++ .+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~--~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDG--EPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCC--Ccc
Confidence 68999999999999999999999999987654322 234788999 9999998 899999999999999999998 444
Q ss_pred CCCCCHHHHHHHHHHHHHhhhHhhhhhhhhcccC----------------CHHH-----------HHHHHHHHHHHHHHH
Q 041305 86 ILPSDPYDRAVARFWAAYVDEKWFSALRDIGSAN----------------GAEA-----------KKAAIEQLIEVLVLL 138 (225)
Q Consensus 86 l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------~~~~-----------~~~~~~~~~~~l~~l 138 (225)
+.|. .+..+.+|+.+....+...+...+... ..+. .++....+.+.|+.+
T Consensus 77 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 153 (209)
T TIGR02182 77 LTGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEEL 153 (209)
T ss_pred CCCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHH
Confidence 4332 455677777765554433322211110 0000 034567789999999
Q ss_pred HHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcch-HHHHHHHHHhcccccc
Q 041305 139 EDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTP-GLFKWAERFCADAAVK 205 (225)
Q Consensus 139 e~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~p~~~ 205 (225)
|++|+ +++|++| ++|+||+++++.+.++.... +. .+| +|.+|++|+++++++.
T Consensus 154 e~~L~----~~~~l~g-~~TiADi~l~~~l~~~~~~~---~~------~~p~~l~~w~~Ri~ar~~~~ 207 (209)
T TIGR02182 154 DKLID----GPNAVNG-ELSEDDILVFPLLRNLTLVA---GI------NWPSRVADYLDNMSKKSKVP 207 (209)
T ss_pred HHHHh----CccccCC-CCCHHHHHHHHHhcCeeeec---CC------CCChHHHHHHHHHHHHhCCC
Confidence 99998 7899965 69999999999998876421 11 255 9999999999998763
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.95 E-value=1.7e-27 Score=177.82 Aligned_cols=215 Identities=18% Similarity=0.283 Sum_probs=161.2
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhCCC
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSS 82 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~~~ 82 (225)
++||.+|.|--|||||++++++||+|+...|++. ...+||...||. |.||||+++..+|+++..|++|+++.+-.
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~g- 104 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTG- 104 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhcc-
Confidence 8999999999999999999999999999999877 688999999998 99999999999999999999999998873
Q ss_pred CCCCCCCC-HHHHHHHHHH---HH-----------HhhhHhh-----hh---hhhhcc----------------------
Q 041305 83 GPSILPSD-PYDRAVARFW---AA-----------YVDEKWF-----SA---LRDIGS---------------------- 117 (225)
Q Consensus 83 ~~~l~p~~-~~~~~~~~~~---~~-----------~~~~~l~-----~~---~~~~~~---------------------- 117 (225)
++.|+|+- ..+..++... +. +++..+. +. +++...
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 56788841 1111111111 00 0011110 00 011000
Q ss_pred ------------cCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCc
Q 041305 118 ------------ANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDE 185 (225)
Q Consensus 118 ------------~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~ 185 (225)
..+.....+..+.+...|..+|.-|.++....+||+|+.+|+||+.+.+.|+++...+... ..+..
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~--~yw~~ 262 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEK--KYWED 262 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHH--Hhccc
Confidence 1233444667788888999999999965545899999999999999999999998873211 22334
Q ss_pred CcchHHHHHHHHHhccccccccCCChHHHHH--HhhcCCCC
Q 041305 186 VKTPGLFKWAERFCADAAVKDVMPETDKLAE--LKASAPPS 224 (225)
Q Consensus 186 ~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~ 224 (225)
+..|+|..|++|++.|++|++++.....+.- ..++.+|+
T Consensus 263 gsrpnle~Yf~rvrrR~sf~kvlg~~fnilr~~~~~~ktp~ 303 (325)
T KOG4420|consen 263 GSRPNLESYFERVRRRFSFRKVLGDIFNILRFRLVKRKTPS 303 (325)
T ss_pred CCCccHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHhcCch
Confidence 6789999999999999999999999887766 55555553
No 22
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.6e-24 Score=157.58 Aligned_cols=196 Identities=20% Similarity=0.325 Sum_probs=164.5
Q ss_pred CCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhCCCCCCCCCCCH
Q 041305 12 SPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDP 91 (225)
Q Consensus 12 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~~~~~~l~p~~~ 91 (225)
..|||||++.+.|..+|++|.++.||+..++++++.+.|. |++|+|..|+..++||..|.++|.+.++ .+.+.--++
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~--~p~~~~~~~ 95 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLP--PPKLPTLAP 95 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcC--CCCCcccCC
Confidence 4799999999999999999999999999999999999998 9999999999999999999999999999 444432222
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhh-ccCCCccccCCCCChhHHHHHhhHhh
Q 041305 92 YDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVK-CSKGKAFFGGNQIGFLDIAFGSYLGW 170 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~~~~l~G~~~t~AD~~l~~~l~~ 170 (225)
.+.+. ... .++..+..++....+...+.....+...|..||.+|.. + .++||.||++|.|||.+.|-|..
T Consensus 96 ~E~as------ag~-diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~--~~~Fl~Gd~lt~aDcsLlPKL~~ 166 (221)
T KOG1422|consen 96 PESAS------AGS-DIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPS--RRKFLDGDKLTLADCSLLPKLHH 166 (221)
T ss_pred HHHHh------hHH-HHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCcc--CCccccCCeeeeehhhhchhHHH
Confidence 23322 122 25555666655555556666778899999999999995 3 69999999999999999999999
Q ss_pred HhhH-hhhccccccCcCcchHHHHHHHHHhccccccccCCChHHHHHHhhcC
Q 041305 171 LRVT-EKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAELKASA 221 (225)
Q Consensus 171 ~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 221 (225)
++.. ..+.++++ ...++++.+|+..+-++..|..+++..+++...|..+
T Consensus 167 i~va~k~yk~~~I--P~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~~ 216 (221)
T KOG1422|consen 167 IKVAAKHYKNFEI--PASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAPV 216 (221)
T ss_pred HHHHHHHhcCCCC--chhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhhh
Confidence 9886 67777777 4789999999999999999999999999999888753
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.90 E-value=7.8e-23 Score=178.59 Aligned_cols=158 Identities=17% Similarity=0.214 Sum_probs=129.9
Q ss_pred CCCCCeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEE-eCCeeehhhHHHHHHHHHhh
Q 041305 1 MAKSDVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI-HNDKPVCESLIIVEYVDEAW 79 (225)
Q Consensus 1 M~~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~~S~~I~~yL~~~~ 79 (225)
|+ ++||+.+.| .+.++.++|++.|++|+.+. .+|. |+||+|+ ++|..|+||.+|++||++.+
T Consensus 1 ~~---~kLy~~~~S-~~~~v~~~L~~lgv~~e~~~------------~~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~ 63 (722)
T PLN02907 1 ME---AKLSFPPDS-PPLAVIAAAKVAGVPLTIDP------------SLKS-GSAPTLLFSSGEKLTGTNVLLRYIARSA 63 (722)
T ss_pred Ce---EEEEECCCC-ChHHHHHHHHHcCCCcEEee------------cCCC-CCCcEEEECCCCEEECHHHHHHHHHHhC
Confidence 66 899999877 57789999999999999874 2577 9999999 68899999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCCh
Q 041305 80 SSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGF 159 (225)
Q Consensus 80 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~ 159 (225)
+ ...|+|.++.+++++++|+.+..... . ...+.+.+..||.+|+ +++||+|+++|+
T Consensus 64 p--~~~L~p~d~~erAqV~qWL~~~~~~~-~-----------------~~~l~~~L~~LE~~L~----~rtYLvGd~lTL 119 (722)
T PLN02907 64 S--LPGFYGQDAFESSQVDEWLDYAPTFS-S-----------------GSEFENACEYVDGYLA----SRTFLVGYSLTI 119 (722)
T ss_pred C--CcCCCCCCHHHHHHHHHHHHHHhhcc-c-----------------HHHHHHHHHHHHHHhc----cCCeecCCCCCH
Confidence 8 67899999999999999998875421 0 0235667899999998 689999999999
Q ss_pred hHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhcccc
Q 041305 160 LDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAA 203 (225)
Q Consensus 160 AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 203 (225)
||+++++.+...... ..+... ...+|+|.+|++++.++|+
T Consensus 120 ADIaL~~~L~~~~~~--~~~~~~--~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 120 ADIAIWSGLAGSGQR--WESLRK--SKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHHHHHHHHHhhhhh--hhcccc--cccCHHHHHHHHHHHhCCC
Confidence 999999988655211 011122 3679999999999999999
No 24
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.83 E-value=9e-20 Score=137.48 Aligned_cols=181 Identities=21% Similarity=0.251 Sum_probs=137.4
Q ss_pred CCeEEeccC-------CChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 4 SDVKVLGFS-------PSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 4 ~~~~L~~~~-------~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
+.+-||.|+ .||||.++..+|+..+||||.+...+. ..++. |++|.++-||+.+.||..|..+|.
T Consensus 44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-------~rSr~-G~lPFIELNGe~iaDS~~I~~~L~ 115 (281)
T KOG4244|consen 44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-------RRSRN-GTLPFIELNGEHIADSDLIEDRLR 115 (281)
T ss_pred CeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-------eeccC-CCcceEEeCCeeccccHHHHHHHH
Confidence 446788776 799999999999999999999976542 23566 999999999999999999999999
Q ss_pred HhhCCCCCCCCCCCHHHHHHHHHHHHHhhhHhhhhhhhhcc----------------------------c----------
Q 041305 77 EAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGS----------------------------A---------- 118 (225)
Q Consensus 77 ~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------------~---------- 118 (225)
+++. -+..+ +++++++.+++..+.++.+...+..+.. .
T Consensus 116 ~hf~--~~~~L--~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r 191 (281)
T KOG4244|consen 116 KHFK--IPDDL--SAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKR 191 (281)
T ss_pred HHcC--CCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHH
Confidence 9998 33323 5578888888887777665433322111 0
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHH
Q 041305 119 ----NGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKW 194 (225)
Q Consensus 119 ----~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~ 194 (225)
-+.-..+++.+.+.+.|..++..|+ +.+||+|+++|-+|+++|+.|..+... ......-+-++.+|+|..|
T Consensus 192 ~~g~IG~f~~~Ei~ell~rDlr~i~~~Lg----~KkflfGdkit~~DatvFgqLa~v~YP-~~~~i~d~le~d~p~l~eY 266 (281)
T KOG4244|consen 192 STGAIGDFESAEIDELLHRDLRAISDYLG----DKKFLFGDKITPADATVFGQLAQVYYP-FRSHISDLLEGDFPNLLEY 266 (281)
T ss_pred hhccccCcCHHHHHHHHHHHHHHHHHHhC----CCccccCCCCCcceeeehhhhhheecc-CCCcHHHHHhhhchHHHHH
Confidence 0111124467778899999999999 789999999999999999999988762 1111222236889999999
Q ss_pred HHHHhcc
Q 041305 195 AERFCAD 201 (225)
Q Consensus 195 ~~~~~~~ 201 (225)
++|+++.
T Consensus 267 ceRIr~~ 273 (281)
T KOG4244|consen 267 CERIRKE 273 (281)
T ss_pred HHHHHHH
Confidence 9999874
No 25
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.83 E-value=2.5e-20 Score=118.94 Aligned_cols=72 Identities=33% Similarity=0.636 Sum_probs=69.5
Q ss_pred EeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhC
Q 041305 8 VLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWS 80 (225)
Q Consensus 8 L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~ 80 (225)
||+++.||||+|+|++|+++||+|+.+.++.....+++...||. |+||+|++||.+++||.+|++||+++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~ 72 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYP 72 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHST
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999988778999999998 9999999999999999999999999998
No 26
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.80 E-value=2.9e-19 Score=113.50 Aligned_cols=73 Identities=30% Similarity=0.451 Sum_probs=68.7
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhh
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAW 79 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~ 79 (225)
|+||+++.||+|++++++|+++|++|+.+.++.....+++.+.||. |++|+|+++|..++||.+|++||++.+
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999999987778899999999 999999999999999999999999764
No 27
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.80 E-value=1.3e-18 Score=132.00 Aligned_cols=186 Identities=18% Similarity=0.310 Sum_probs=126.7
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhCCCCC
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGP 84 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~~~~~ 84 (225)
+++||-+..||||.+||.+|.+.||+|++++|++-.+.+ .+-+.. .+||+|...|+.+.||.+|+.-|+.....+..
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~e--Ik~Ssy-kKVPil~~~Geqm~dSsvIIs~laTyLq~~~q 166 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQE--IKWSSY-KKVPILLIRGEQMVDSSVIISLLATYLQDKRQ 166 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhh--cccccc-ccccEEEeccceechhHHHHHHHHHHhccCCC
Confidence 589999999999999999999999999999999653322 344566 89999997788899999998776433210000
Q ss_pred ------CCCC-----------------------------CCHHHHHHHHHHHHHhhhHhhhhhhhhcccC----------
Q 041305 85 ------SILP-----------------------------SDPYDRAVARFWAAYVDEKWFSALRDIGSAN---------- 119 (225)
Q Consensus 85 ------~l~p-----------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------- 119 (225)
.++| .+.+.+.+-+.|.+|.++.+...+.+..+..
T Consensus 167 ~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 167 DLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred CHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 0122 1112233457888888887655443322210
Q ss_pred -----------------------------------CHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHH
Q 041305 120 -----------------------------------GAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAF 164 (225)
Q Consensus 120 -----------------------------------~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l 164 (225)
..-...+.++.+.++.+.+-..|++ +++|+.|++|++||+.+
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgk---nr~flGG~kPnLaDLsv 323 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGK---NRPFLGGKKPNLADLSV 323 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCC---CCCccCCCCCchhhhhh
Confidence 0000112334444555555555554 79999999999999999
Q ss_pred HhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhcc
Q 041305 165 GSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCAD 201 (225)
Q Consensus 165 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 201 (225)
|++++.+.....+.++ -+..++..|+-+|++.
T Consensus 324 fGvl~sm~gc~afkd~-----~q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 324 FGVLRSMEGCQAFKDC-----LQNTSIGEWYYRMEAL 355 (370)
T ss_pred hhhhhHhhhhhHHHHH-----HhcchHHHHHHHHHHH
Confidence 9999999877554433 2357999999999874
No 28
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.80 E-value=2.4e-19 Score=113.58 Aligned_cols=70 Identities=23% Similarity=0.490 Sum_probs=65.0
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
++||+++.|++|++++++|+++|++|+.+.++.. .+.+++.+.||. |+||+|++||..++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999998864 456789999999 999999999999999999999984
No 29
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.79 E-value=5e-19 Score=112.72 Aligned_cols=73 Identities=73% Similarity=1.190 Sum_probs=67.8
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCC-CCCccceEEeCCeeehhhHHHHHHHHHhh
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNP-VHKKIPVLIHNDKPVCESLIIVEYVDEAW 79 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p-~~g~vP~L~~~g~~l~~S~~I~~yL~~~~ 79 (225)
|+||+++.||+|++++++|+++|++|+.+.++...+.+++.+.|| . |++|+|+++|..++||.+|++||++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~-~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVH-KKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCC-CCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 689999999999999999999999999999887777788999999 5 899999999999999999999998764
No 30
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.79 E-value=6e-19 Score=114.98 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=65.5
Q ss_pred CCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhC
Q 041305 12 SPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWS 80 (225)
Q Consensus 12 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~ 80 (225)
..||||+++|++|+++||+|+.+.+++..+++++++.||. |++|+|+++|.+|+||.+|++||++.++
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~ 87 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLC 87 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHcc
Confidence 5799999999999999999999999998888999999999 9999999999999999999999999998
No 31
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.78 E-value=1.1e-18 Score=111.95 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=65.4
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCC-CchHHHhhCCCCCccceEEe--CCeeehhhHHHHHHHHHhh
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGS-KSELLLKSNPVHKKIPVLIH--NDKPVCESLIIVEYVDEAW 79 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~g~vP~L~~--~g~~l~~S~~I~~yL~~~~ 79 (225)
++||+++.||+|++++++|.++|++|+.+.++... ..+++++.||. |++|+|++ +|..++||.+|++||++.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 79999999999999999999999999999886543 45788899998 99999985 4789999999999999864
No 32
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.77 E-value=1.2e-18 Score=110.91 Aligned_cols=71 Identities=27% Similarity=0.308 Sum_probs=65.4
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDE 77 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~ 77 (225)
|+||+++.||+|++++++|+++|++|+.+.++.. ...+++.+.||. |++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 6899999999999999999999999999999864 345889999999 9999999999999999999999974
No 33
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.77 E-value=9.1e-19 Score=111.10 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=65.6
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDE 77 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~ 77 (225)
++||+++.|++|++++++|+++|++|+.+.++.....+++...||. |++|+|+++|.+++||.+|++||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhc
Confidence 7999999999999999999999999999999865555678899999 9999999999999999999999975
No 34
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.77 E-value=2.2e-18 Score=108.75 Aligned_cols=69 Identities=32% Similarity=0.515 Sum_probs=64.4
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEe-CCeeehhhHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIH-NDKPVCESLIIVEYV 75 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~~S~~I~~yL 75 (225)
++||+++.||+|+|++++|+++|++|+.+.++.....+++.+.||. |+||+|++ ||..++||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 3799999999999999999999999999999987777889999999 99999996 599999999999996
No 35
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.76 E-value=3.5e-18 Score=109.36 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=66.4
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhh
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAW 79 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~ 79 (225)
++||+++.|++|++++++|+++|++|+.+.++.. ...+++.+.||. |++|+|+++|.+++||.+|++||++.+
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999998865 244678899999 999999999999999999999999764
No 36
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.76 E-value=3.1e-18 Score=109.64 Aligned_cols=71 Identities=35% Similarity=0.476 Sum_probs=65.9
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDE 77 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~ 77 (225)
++||+++.||+|++++++|+++|++|+.+.++.. ..++++.+.||. |++|+|+++|..++||.+|++||++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~ 75 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAE 75 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhh
Confidence 7999999999999999999999999999988865 456788999999 9999999999999999999999986
No 37
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.75 E-value=7.9e-18 Score=109.08 Aligned_cols=73 Identities=25% Similarity=0.397 Sum_probs=66.8
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeC---CeeehhhHHHHHHHHHhh
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHN---DKPVCESLIIVEYVDEAW 79 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~---g~~l~~S~~I~~yL~~~~ 79 (225)
++||+++. |+|++++++|+++|++|+.+.++.. ..++++.+.||. |++|+|+++ |..|+||.+|++||++.+
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 79999986 9999999999999999999999864 466889999999 999999976 899999999999999988
Q ss_pred C
Q 041305 80 S 80 (225)
Q Consensus 80 ~ 80 (225)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 38
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.74 E-value=7.2e-18 Score=107.02 Aligned_cols=70 Identities=27% Similarity=0.479 Sum_probs=64.5
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
++||+++.||+|++++++|+++|++|+.+.++.. ...+++.+.||. |++|+|+++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 356888899999 999999999999999999999984
No 39
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.74 E-value=9.1e-18 Score=110.62 Aligned_cols=72 Identities=36% Similarity=0.580 Sum_probs=66.5
Q ss_pred CCeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeC-CeeehhhHHHHHHHH
Q 041305 4 SDVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHN-DKPVCESLIIVEYVD 76 (225)
Q Consensus 4 ~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~-g~~l~~S~~I~~yL~ 76 (225)
++++||+++.||+|++++++|+++|++|+.+.++.....+++.+.||. |++|+|+++ |..++||.+|++||+
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 479999999999999999999999999999999877666778999999 999999965 899999999999985
No 40
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.74 E-value=9.9e-18 Score=106.93 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=64.8
Q ss_pred EEeccCCChHHHHHHHHHHhhCCcceEEEccCC--CCchHHHhhCCCCCccceEEe-CCeeehhhHHHHHHHHH
Q 041305 7 KVLGFSPSPFVMRARIALKIKSVEYEFLEENLG--SKSELLLKSNPVHKKIPVLIH-NDKPVCESLIIVEYVDE 77 (225)
Q Consensus 7 ~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~--~~~~~~~~~~p~~g~vP~L~~-~g~~l~~S~~I~~yL~~ 77 (225)
+||+++.||+|++++++|+++|++|+.+.++.. .+.+++.+.||. |++|+|++ +|..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999875 467889999999 99999995 68999999999999985
No 41
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.74 E-value=4.3e-18 Score=107.78 Aligned_cols=71 Identities=24% Similarity=0.223 Sum_probs=63.4
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCC-CchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGS-KSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDE 77 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~ 77 (225)
++||+++.|++|+++|++|+++|++|+.+.++... ...++.+.||. |++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988652 22347789999 9999999999999999999999974
No 42
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.74 E-value=8.3e-17 Score=113.10 Aligned_cols=124 Identities=52% Similarity=0.910 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhH
Q 041305 92 YDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWL 171 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~ 171 (225)
.+++++++|+.+.+..+.+.....+.. .+...+.....+.+.+..+|+.|+ +++|++|+++|+||+++++.+.++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~----~~~~l~G~~~t~ADi~l~~~~~~~ 76 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAA-KGEEREKAKEEALEALKVLEEELG----GKPFFGGDTIGYVDIALGSFLGWF 76 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHHHHHhc----CCCCCCCCCcchHHHHHHHHHHHH
Confidence 478899999999988887776655543 245556678889999999999998 679999999999999999999988
Q ss_pred hhHhhhccccccCcCcchHHHHHHHHHhccccccccCCChHHHHHHhhc
Q 041305 172 RVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAELKAS 220 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 220 (225)
.......+...+....+|++.+|++++.++|+++++++..+..++.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 125 (126)
T cd03185 77 RAYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAKA 125 (126)
T ss_pred HHHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHHh
Confidence 6543333333222367999999999999999999999999888876654
No 43
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.74 E-value=1e-17 Score=106.33 Aligned_cols=70 Identities=24% Similarity=0.288 Sum_probs=64.0
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
++||+++.|+++++++++|+++|++|+.+.++.. ...+++.+.||. |++|+|+++|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999988753 346788999999 999999999999999999999984
No 44
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.73 E-value=9.8e-18 Score=106.42 Aligned_cols=70 Identities=34% Similarity=0.506 Sum_probs=65.1
Q ss_pred eEEeccCCChHHHHHHHHHHh--hCCcceEEEccCCCCchHHHhhCCCCCccceEE-eCCeeehhhHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKI--KSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI-HNDKPVCESLIIVEYVD 76 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~--~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~~S~~I~~yL~ 76 (225)
++||+++.||+|+++|++|++ +|++|+.+.++...+.+++++.||. |++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8899999999877777889999998 9999998 68899999999999985
No 45
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.73 E-value=1.8e-17 Score=104.60 Aligned_cols=70 Identities=24% Similarity=0.402 Sum_probs=61.0
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeC-CeeehhhHHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHN-DKPVCESLIIVEYVDE 77 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~-g~~l~~S~~I~~yL~~ 77 (225)
|+||+++.||+|+|+|++|.++|++|+.+.++... .....+.+|. |++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 58999999999999999999999999999887543 2344678998 999999965 8999999999999974
No 46
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.73 E-value=2.3e-17 Score=105.54 Aligned_cols=73 Identities=25% Similarity=0.381 Sum_probs=66.2
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhC
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWS 80 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~ 80 (225)
++||+++. +++++++++|+++|++|+.+.++.. .+.+++.+.||. |++|+|+++|..++||.+|++||++.++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999886 5899999999999999999998864 467889999999 9999999999999999999999998875
No 47
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.72 E-value=1.7e-17 Score=105.57 Aligned_cols=70 Identities=27% Similarity=0.455 Sum_probs=63.6
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEE-eCCeeehhhHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLI-HNDKPVCESLIIVEYVD 76 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~-~~g~~l~~S~~I~~yL~ 76 (225)
|+||+++.||+|++++++|.++|++|+.+.++.. ...+++.+.||. |++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998764 356778999999 9999998 68889999999999985
No 48
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.72 E-value=4.1e-17 Score=104.66 Aligned_cols=73 Identities=22% Similarity=0.358 Sum_probs=65.2
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeC-CeeehhhHHHHHHHHHhhC
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHN-DKPVCESLIIVEYVDEAWS 80 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~-g~~l~~S~~I~~yL~~~~~ 80 (225)
|+||+++.| ++++++++|+++|++|+.+.++.. ...+++.+.||. |++|+|+++ |..++||.+|++||++.+|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999976 699999999999999999998865 347889999999 999999965 8999999999999998875
No 49
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.71 E-value=2e-16 Score=113.40 Aligned_cols=128 Identities=17% Similarity=0.183 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhH
Q 041305 92 YDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWL 171 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~ 171 (225)
+.++.+++|++|....+.+.+.+.....+++..+.....+.+.|..+|+.|+ +++|++|+++|+||+++++.+.++
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~----~~~yl~Gd~~TlADi~l~~~l~~~ 78 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLS----DRRYLLGDRLTEADIRLFTTLIRF 78 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHc----cCCeeeCCCccHHHHHHHHHHHHH
Confidence 4678899999999999888777665555667777888999999999999998 689999999999999999998876
Q ss_pred hhHh-hhccccccCcCcchHHHHHHHHHhccccccccCCChHHHHHHhhcCCC
Q 041305 172 RVTE-KMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAELKASAPP 223 (225)
Q Consensus 172 ~~~~-~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 223 (225)
.... ............+|+|.+|++++.++|++++++.......++++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~ 131 (142)
T cd03190 79 DAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFP 131 (142)
T ss_pred HHHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCC
Confidence 4321 000111111257999999999999999999999988888888888754
No 50
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.71 E-value=3.5e-17 Score=104.98 Aligned_cols=73 Identities=22% Similarity=0.411 Sum_probs=62.9
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeC----CeeehhhHHHHHHHHHhhC
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHN----DKPVCESLIIVEYVDEAWS 80 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~----g~~l~~S~~I~~yL~~~~~ 80 (225)
+++||+++.||+|++++++|.++|++|+.+.++.... .+ ...+|. |++|+|+++ |.+++||.+|++||++..+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~-~~-~~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSR-KE-IKWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhH-HH-HHHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 5899999999999999999999999999998875432 23 466998 999999944 7899999999999998753
No 51
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.71 E-value=4.4e-17 Score=103.37 Aligned_cols=70 Identities=31% Similarity=0.482 Sum_probs=64.5
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
|+||+++.|++|++++++|+++|++|+.+.++.. ...+++.+.||. |++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 456788999999 999999999999999999999984
No 52
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.71 E-value=6e-17 Score=104.22 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=62.7
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhC-----CCCCccceEEeCCeeehhhHHHHHHHHHhh
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSN-----PVHKKIPVLIHNDKPVCESLIIVEYVDEAW 79 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~-----p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~ 79 (225)
+++||+++.|+.+++++++|+++|++|+.+.++.. +++.+.+ |. |++|+|++||..|+||.||++||++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 47999999999999999999999999999988752 3333333 57 899999999999999999999999988
Q ss_pred C
Q 041305 80 S 80 (225)
Q Consensus 80 ~ 80 (225)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 7
No 53
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.70 E-value=1.1e-16 Score=102.13 Aligned_cols=67 Identities=24% Similarity=0.493 Sum_probs=60.9
Q ss_pred eEEeccC-------CChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHh
Q 041305 6 VKVLGFS-------PSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEA 78 (225)
Q Consensus 6 ~~L~~~~-------~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~ 78 (225)
++||+++ .||+|++++++|+++|++|+.+.++. .+.||. |++|+|+++|.+++||.+|++||+++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPK-GKLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCC-CCCCEEEECCEEEcCHHHHHHHHHHH
Confidence 6899998 68999999999999999999998774 257998 99999999999999999999999998
Q ss_pred hC
Q 041305 79 WS 80 (225)
Q Consensus 79 ~~ 80 (225)
++
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 74
No 54
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.4e-16 Score=119.55 Aligned_cols=199 Identities=17% Similarity=0.210 Sum_probs=153.2
Q ss_pred CCCeEEeccCCChHHHHHHHHHHhhCCc-c-eEEEcc--CCCCchHH----------------------HhhCCCC---C
Q 041305 3 KSDVKVLGFSPSPFVMRARIALKIKSVE-Y-EFLEEN--LGSKSELL----------------------LKSNPVH---K 53 (225)
Q Consensus 3 ~~~~~L~~~~~s~~~~~v~~~L~~~gi~-~-~~~~~~--~~~~~~~~----------------------~~~~p~~---g 53 (225)
.+++.||..-.|||+.|..++=+++|+. + ....++ +..+...| ....|.+ -
T Consensus 49 ~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRv 128 (324)
T COG0435 49 KGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRV 128 (324)
T ss_pred CCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCce
Confidence 3689999999999999999999999985 1 122222 11111111 1123311 3
Q ss_pred ccceEEeC---CeeehhhHHHHHHHHHhhCC---CCCCCCCCCHHHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHH
Q 041305 54 KIPVLIHN---DKPVCESLIIVEYVDEAWSS---SGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAA 127 (225)
Q Consensus 54 ~vP~L~~~---g~~l~~S~~I~~yL~~~~~~---~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 127 (225)
+||||.+. ..+-.||..|++-+...+.. ....|+|. ..+.+++.+.+++.+.+...+++.....++++.++.
T Consensus 129 TVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~--~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea 206 (324)
T COG0435 129 TVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE--ALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEA 206 (324)
T ss_pred eEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH--HHHHHHHHHHhhhcccccCceeeecccchHHHHHHH
Confidence 79999853 34578999999998765532 24468887 678899999999999988888888888889999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhH---hhhccccccCcCcchHHHHHHHHHhccccc
Q 041305 128 IEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVT---EKMNEVKLLDEVKTPGLFKWAERFCADAAV 204 (225)
Q Consensus 128 ~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~---~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 204 (225)
.+.+.+.|++||..|+ .+.||+|+++|-||+-+|+-|-++..+ .+..+..-| ..||+|..|...+-+.|++
T Consensus 207 ~~~lF~~Ld~lE~~L~----~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI--~dypnL~~yLr~LYq~pg~ 280 (324)
T COG0435 207 VKKLFEALDKLEQILS----ERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRI--RDYPNLWGYLRDLYQLPGF 280 (324)
T ss_pred HHHHHHHHHHHHHHhh----cCeeeccccchHhhhhhhheeEeecceEEeeeecccchh--hcCchHHHHHHHHhcCccc
Confidence 9999999999999999 789999999999999999999887654 222233334 5599999999999999999
Q ss_pred cccCC
Q 041305 205 KDVMP 209 (225)
Q Consensus 205 ~~~~~ 209 (225)
.+++.
T Consensus 281 ~~T~d 285 (324)
T COG0435 281 AETVD 285 (324)
T ss_pred ccccc
Confidence 98764
No 55
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.70 E-value=6.6e-17 Score=104.71 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=62.2
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCC----CchHHHh-----hCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGS----KSELLLK-----SNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~----~~~~~~~-----~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
.+|||+..++.|++++++|+++|++|+.+.+++.. .++++.. .+|+ |+||+|++||..|+||.||++||+
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHh
Confidence 37999999999999999999999999999998753 1244432 2298 999999999999999999999998
Q ss_pred Hhh
Q 041305 77 EAW 79 (225)
Q Consensus 77 ~~~ 79 (225)
+.+
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 764
No 56
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.69 E-value=1.1e-16 Score=102.22 Aligned_cols=72 Identities=28% Similarity=0.345 Sum_probs=59.5
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeC-CeeehhhHHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHN-DKPVCESLIIVEYVDE 77 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~-g~~l~~S~~I~~yL~~ 77 (225)
|+|+++..+++++++|++|+++|++|+.+.++.. .+.+++.+.||..|++|+|+++ |.+|+||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 3455555555999999999999999999999875 3348899999963799999988 9999999999999985
No 57
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.69 E-value=1e-16 Score=100.68 Aligned_cols=65 Identities=42% Similarity=0.600 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHhhCCcceEEEccC----CCCchHHHhhCCCCCccceEEe-CCeeehhhHHHHHHHHHh
Q 041305 13 PSPFVMRARIALKIKSVEYEFLEENL----GSKSELLLKSNPVHKKIPVLIH-NDKPVCESLIIVEYVDEA 78 (225)
Q Consensus 13 ~s~~~~~v~~~L~~~gi~~~~~~~~~----~~~~~~~~~~~p~~g~vP~L~~-~g~~l~~S~~I~~yL~~~ 78 (225)
.|||++|++++|+++|++|+...+.. ..+++++.+.||. |+||+|++ +|.+++||.+|++||++.
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988843 2556889999999 99999995 899999999999999863
No 58
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.3e-15 Score=106.99 Aligned_cols=180 Identities=18% Similarity=0.232 Sum_probs=123.0
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEE-eCCeeehhhHHHHHHHHHhhCCCCC
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI-HNDKPVCESLIIVEYVDEAWSSSGP 84 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~~S~~I~~yL~~~~~~~~~ 84 (225)
|+||-+..||||-|+|+++-.+|||++.+...-++......-+. . .+||+|+ ++|..+.||..|+.|+++..+ .+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG-~-KqVPiL~Kedg~~m~ESlDIV~y~d~~~~--~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIG-Q-KQVPILQKEDGRAMPESLDIVHYVDELDG--KP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhc-c-cccceEEccccccchhhhHHHHHHHHhcC--ch
Confidence 68999999999999999999999999998876543222222222 3 6899999 899999999999999999998 33
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhHhhhhhh-----------------hhcccCCH----------HHHHHHHHHHHHHHHH
Q 041305 85 SILPSDPYDRAVARFWAAYVDEKWFSALR-----------------DIGSANGA----------EAKKAAIEQLIEVLVL 137 (225)
Q Consensus 85 ~l~p~~~~~~~~~~~~~~~~~~~l~~~~~-----------------~~~~~~~~----------~~~~~~~~~~~~~l~~ 137 (225)
-+-+ ..+-.++.|+.-+......... .++..+.. ........++...+..
T Consensus 77 ~lt~---~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~ 153 (215)
T COG2999 77 LLTG---KVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRA 153 (215)
T ss_pred hhcc---CcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHH
Confidence 3322 2233455555444432222211 11111000 0124456778888888
Q ss_pred HHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhcccccc
Q 041305 138 LEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVK 205 (225)
Q Consensus 138 le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 205 (225)
++..+.. ..=+ -..+++=|+.+|++|+.+..+ .|+.| -.++..|..+|.+...+.
T Consensus 154 l~~Li~~----~s~~-n~~l~~ddi~vFplLRnlt~v---~gi~w-----ps~v~dy~~~msektqV~ 208 (215)
T COG2999 154 LDKLIVG----PSAV-NGELSEDDILVFPLLRNLTLV---AGIQW-----PSRVADYRDNMSEKTQVN 208 (215)
T ss_pred HHHHhcC----cchh-ccccchhhhhhhHHhccceec---ccCCC-----cHHHHHHHHHHHHhhCcc
Confidence 8888873 3322 246999999999999988764 35665 357999999998876554
No 59
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.66 E-value=1.5e-15 Score=106.36 Aligned_cols=122 Identities=23% Similarity=0.331 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHh
Q 041305 93 DRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLR 172 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~ 172 (225)
++++.+.|++++.. +.....+.+.. ++..+...+.+.+.+..+|+.|+.. +++|++|+++|+||+++++.+.++.
T Consensus 2 ~ra~~r~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~l~~le~~L~~~--~~~yl~G~~~t~aDi~~~~~~~~~~ 76 (124)
T cd03184 2 EKAQQKLLLERFSK-VVSAFYKLLGA--PSDREEKKAELRSALENLEEELTKR--GTPFFGGDSPGMVDYMIWPWFERLE 76 (124)
T ss_pred hHHHHHHHHHHHhh-hhHHHHHHHhc--cccchhhHHHHHHHHHHHHHHHHhc--CCCCcCCCCccHHHHHhhHHHHHHH
Confidence 47889999998874 55555555543 4555677889999999999999842 3799999999999999999998876
Q ss_pred hHhhhccccccCcCcchHHHHHHHHHhccccccccCCChHHHHHHhhc
Q 041305 173 VTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAELKAS 220 (225)
Q Consensus 173 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 220 (225)
......|. ......+|+|++|++++.++|+++.++.+.+...+.++.
T Consensus 77 ~~~~~~~~-~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~~ 123 (124)
T cd03184 77 ALKLLLGY-EFPLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLKS 123 (124)
T ss_pred HHHhhccc-cCCcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHhc
Confidence 55322121 112377999999999999999999999999998888764
No 60
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.65 E-value=3.9e-16 Score=101.76 Aligned_cols=67 Identities=28% Similarity=0.474 Sum_probs=58.2
Q ss_pred CCChHHHHHHHHHHhhCCcceEEEccCCCCc---hHHHhhCCCCCccceEEeC-CeeehhhHHHHHHHHHhhC
Q 041305 12 SPSPFVMRARIALKIKSVEYEFLEENLGSKS---ELLLKSNPVHKKIPVLIHN-DKPVCESLIIVEYVDEAWS 80 (225)
Q Consensus 12 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~---~~~~~~~p~~g~vP~L~~~-g~~l~~S~~I~~yL~~~~~ 80 (225)
+.||+|+|++++|.++|++|+.+.++..... .++ +.||. |++|+|+++ |..++||.+|++||++.++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 6899999999999999999999998865322 233 78998 999999987 8999999999999998875
No 61
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1e-15 Score=115.06 Aligned_cols=214 Identities=20% Similarity=0.180 Sum_probs=154.2
Q ss_pred CCCeEEeccCCChHHHHHHHHHHhhCCc----ceEEEccCCCCchHHHh------------------------------h
Q 041305 3 KSDVKVLGFSPSPFVMRARIALKIKSVE----YEFLEENLGSKSELLLK------------------------------S 48 (225)
Q Consensus 3 ~~~~~L~~~~~s~~~~~v~~~L~~~gi~----~~~~~~~~~~~~~~~~~------------------------------~ 48 (225)
.+++.||..-.|||+.|..+.++.+|+. +..+---...+...|.. .
T Consensus 35 kgryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~ 114 (319)
T KOG2903|consen 35 KGRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIA 114 (319)
T ss_pred CceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhc
Confidence 3689999999999999999999999985 22221101111111111 1
Q ss_pred CCCC-C--ccceEEeC---CeeehhhHHHHHHHHH---hhCC----CCCCCCCCCHHHHHHHHHHHHHhhhHhhhhhhhh
Q 041305 49 NPVH-K--KIPVLIHN---DKPVCESLIIVEYVDE---AWSS----SGPSILPSDPYDRAVARFWAAYVDEKWFSALRDI 115 (225)
Q Consensus 49 ~p~~-g--~vP~L~~~---g~~l~~S~~I~~yL~~---~~~~----~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~ 115 (225)
+|.+ | +||||-|- ..+-.||..|++.+.. .+.. +.-.|+|. ..+++++.+.+|+.+.+...+++.
T Consensus 115 ~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~--~L~~~Ide~N~wvy~~INNGVYk~ 192 (319)
T KOG2903|consen 115 SPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPS--SLRAQIDETNSWVYDKINNGVYKC 192 (319)
T ss_pred CCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCH--HHHHHHhhhhceecccccCceeee
Confidence 2211 1 69999854 4567899999999983 2221 12357776 678999999999999988888888
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhH---hhhccccccCcCcchHHH
Q 041305 116 GSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVT---EKMNEVKLLDEVKTPGLF 192 (225)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~---~~~~~~~~~~~~~~p~l~ 192 (225)
.....++..+.....+.+.|+.+|.+|+++ .+.|++|+++|-||+.+++-+.++..+ .+......+ ..+||+|-
T Consensus 193 GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~--~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~i-r~~Yp~l~ 269 (319)
T KOG2903|consen 193 GFAEKQEAYEEEVNQLFEALDRCEDVLGKN--RKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTI-RDEYPNLH 269 (319)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhcc--cceEeeccccchhheeeeeeEEeehhhhheeeecchhhh-hccCcHHH
Confidence 777788888999999999999999999965 345999999999999999998877654 122222333 35899999
Q ss_pred HHHHHHhc-cccccccCCChHHHHHHhhcC
Q 041305 193 KWAERFCA-DAAVKDVMPETDKLAELKASA 221 (225)
Q Consensus 193 ~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~ 221 (225)
.|..++-. .|+++.++.=.---..+++++
T Consensus 270 ~~lk~iY~~~~~~~~Ttd~~hIk~~Y~~S~ 299 (319)
T KOG2903|consen 270 NWLKNIYWNIPGFSSTTDFNHIKLHYYRSH 299 (319)
T ss_pred HHHHHHHhhccchhhccchhHHhhhhcccc
Confidence 99999988 999997664333333344433
No 62
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.65 E-value=2.8e-15 Score=102.32 Aligned_cols=105 Identities=21% Similarity=0.349 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhH
Q 041305 92 YDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWL 171 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~ 171 (225)
.++++++.|+.++++.+.+.+...... .++..+.....+.+.+..+|+.|+ +++|++|+++|+||+++++.+.++
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~----~~~~l~G~~~t~aDi~~~~~~~~~ 76 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKG-RKKEAEKARKELRESLLALAPVFA----HKPYFMSEEFSLVDCALAPLLWRL 76 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHc----CCCcccCCCCcHHHHHHHHHHHHH
Confidence 578999999999999887776665543 355567788899999999999998 689999999999999999998655
Q ss_pred hhHhhhccccccCcCcchHHHHHHHHHhcccccccc
Q 041305 172 RVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDV 207 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 207 (225)
... |..+. ..+|++.+|++++.++|+++++
T Consensus 77 ~~~----~~~~~--~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 77 PAL----GIELP--KQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHc----CCCCc--ccchHHHHHHHHHHCCHHHHHh
Confidence 422 43332 4799999999999999999865
No 63
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.64 E-value=2e-15 Score=104.30 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHhhhHhhhhhhhhcccC--CHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhh
Q 041305 90 DPYDRAVARFWAAYVDEKWFSALRDIGSAN--GAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSY 167 (225)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~ 167 (225)
++..++.+++|.++....+.+.+..+.+.. ..+..+.....+.+.+..+|+.|+ +++|++|+++|+||+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~----~~~yl~Gd~~tlADi~l~~~ 78 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQ----QHSYLLGDKPSLADWAIFPF 78 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHc----cCCccCCCCccHHHHHHHHH
Confidence 788999999999999998888777755532 222466778899999999999999 67999999999999999998
Q ss_pred HhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccC
Q 041305 168 LGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVM 208 (225)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 208 (225)
+.++.... ..+ +....+|+|.+|++++.++|++++++
T Consensus 79 l~~~~~~~-~~~---~~~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 79 VRQFAHVD-PKW---FDQSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred HHHHHHhh-hcc---cCcccCHHHHHHHHHHHcChHHHhhC
Confidence 87665321 111 12277999999999999999998753
No 64
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.64 E-value=1.5e-15 Score=96.19 Aligned_cols=67 Identities=27% Similarity=0.375 Sum_probs=60.2
Q ss_pred eccCCChHHHHHHHHHHhhCCcceEEEccCCC--CchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 9 LGFSPSPFVMRARIALKIKSVEYEFLEENLGS--KSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 9 ~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
-....|++|++++++|+++|++|+.+.++... ..+++.+.||. |++|+|+++|.+++||.+|++||+
T Consensus 5 ~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 5 GNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 35678999999999999999999999998653 45788999999 999999999999999999999984
No 65
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.63 E-value=3.2e-15 Score=104.79 Aligned_cols=111 Identities=13% Similarity=0.240 Sum_probs=90.5
Q ss_pred HhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhc------------cCCCccccCCCCChhHHHHHhhHhhHhhH
Q 041305 107 KWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKC------------SKGKAFFGGNQIGFLDIAFGSYLGWLRVT 174 (225)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~------------~~~~~~l~G~~~t~AD~~l~~~l~~~~~~ 174 (225)
.+++.+..++.+.+++..+.....+.+.|..||.+|... ..+++|++|+++|+|||++++.+.++...
T Consensus 10 ~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~ 89 (134)
T cd03198 10 DIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVV 89 (134)
T ss_pred HHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 477777778777778888889999999999999999841 01378999999999999999999877643
Q ss_pred -hhhccccccCcCcchHHHHHHHHHhccccccccCCChHHHHHHhh
Q 041305 175 -EKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAELKA 219 (225)
Q Consensus 175 -~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 219 (225)
....+..+ ...+|+|.+|++++.++|+|++++...+.++..|+
T Consensus 90 ~~~~~g~~i--~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~~~ 133 (134)
T cd03198 90 AKKYRNFEI--PADLTGLWRYLKNAYQREEFTNTCPADQEIELAYK 133 (134)
T ss_pred HHhhcCCCc--cccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHHhc
Confidence 12224443 26799999999999999999999999998887664
No 66
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.63 E-value=2.5e-15 Score=103.55 Aligned_cols=105 Identities=23% Similarity=0.334 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhhhHhhhhhhhhcccCC--------HHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHH
Q 041305 93 DRAVARFWAAYVDEKWFSALRDIGSANG--------AEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAF 164 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l 164 (225)
+++.+++|+.+..+.+.+.+........ +...+.....+.+.+..+|+.|+ +++|++|+++|+||+++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~----~~~~l~G~~~t~aDi~~ 77 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLA----GGPYLLGDRFSVADAYL 77 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhc----CCCeeeCCCcchHHHHH
Confidence 4788999999998888877654443321 33346677889999999999998 68999999999999999
Q ss_pred HhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccC
Q 041305 165 GSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVM 208 (225)
Q Consensus 165 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 208 (225)
++.+.++... +... ..+|++.+|++++.++|++++++
T Consensus 78 ~~~~~~~~~~----~~~~---~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 78 FVVLRWAPGV----GLDL---SDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHHHHhhc----CCCh---hhChHHHHHHHHHHhCHHhHhhC
Confidence 9999876542 2222 57999999999999999998753
No 67
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.61 E-value=2.4e-15 Score=94.22 Aligned_cols=70 Identities=37% Similarity=0.587 Sum_probs=62.6
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCch-HHHhhCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSE-LLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~-~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
++||+++.||+|++++++|+++|++|+.+.++...... ++.+.+|. +++|+|+.+|..+.||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999988653333 47788998 999999999999999999999984
No 68
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.58 E-value=8.4e-15 Score=92.58 Aligned_cols=65 Identities=22% Similarity=0.406 Sum_probs=57.4
Q ss_pred eEEeccC-------CChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHh
Q 041305 6 VKVLGFS-------PSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEA 78 (225)
Q Consensus 6 ~~L~~~~-------~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~ 78 (225)
++||.++ .||+|++++++|+++|++|+.+.++... .||. |++|+|+++|..++||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3577666 9999999999999999999999887522 6898 99999999999999999999999863
No 69
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.58 E-value=5.3e-14 Score=97.91 Aligned_cols=106 Identities=14% Similarity=0.229 Sum_probs=82.1
Q ss_pred hhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhH-hhhccccccCcC
Q 041305 108 WFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVT-EKMNEVKLLDEV 186 (225)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~-~~~~~~~~~~~~ 186 (225)
+++....++...+.. ++..+.+.+.+..||..|+. +++|++|+++|+||+++++.+.++... ....++.. ..
T Consensus 14 ~~~~~~~~~~~~~~~--~~~~~~l~~~l~~Le~~L~~---~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~--~~ 86 (121)
T cd03201 14 IFSTFVGFLKSKDSN--DGTEQALLDELEALEDHLKE---NGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSV--PE 86 (121)
T ss_pred HHHHHHHHHHCCcHH--HHHHHHHHHHHHHHHHHHhc---CCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCC--cc
Confidence 555555555544333 55667899999999999983 279999999999999999988777643 22223332 26
Q ss_pred cchHHHHHHHHHhccccccccCCChHHHHHHhhc
Q 041305 187 KTPGLFKWAERFCADAAVKDVMPETDKLAELKAS 220 (225)
Q Consensus 187 ~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 220 (225)
.+|+|.+|++++.++|++++++...+++++.|+.
T Consensus 87 ~~P~l~~w~~rl~~rps~~~t~~~~~~~~~~~~~ 120 (121)
T cd03201 87 SLTSVKSYMKALFSRESFVKTKAEKEDVIAGWAP 120 (121)
T ss_pred cchHHHHHHHHHHCCchhhhcCCCHHHHHHHhcc
Confidence 7999999999999999999999999999888764
No 70
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.57 E-value=7.8e-14 Score=96.62 Aligned_cols=105 Identities=16% Similarity=0.301 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHhhhHhhhhhhhhccc------------CCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCC
Q 041305 90 DPYDRAVARFWAAYVDEKWFSALRDIGSA------------NGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQI 157 (225)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~ 157 (225)
++.+++.+++|+.+.+..+.+.+...+.. ...+..++....+.+.+..+|+.|+ +++|++|+++
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~----~~~~l~gd~~ 76 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLA----GSPYVAGDRF 76 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhc----CCCcccCCCC
Confidence 46789999999999888777655443311 2345567788899999999999998 6789999999
Q ss_pred ChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccc
Q 041305 158 GFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAV 204 (225)
Q Consensus 158 t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 204 (225)
|+||+++++.+.++... +.++ ...+|+|.+|++++.++|++
T Consensus 77 t~aDi~l~~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 77 TIADITAFVGLDFAKVV----KLRV--PEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred CHHHHHHHHHhHHHHhc----CCCC--ccccHHHHHHHHHHHhccCC
Confidence 99999999999887653 3343 25799999999999999974
No 71
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.56 E-value=1.6e-14 Score=100.75 Aligned_cols=111 Identities=15% Similarity=0.067 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhh----hccc--C--CHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHH
Q 041305 92 YDRAVARFWAAYVDEKWFSALRD----IGSA--N--GAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIA 163 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~--~--~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~ 163 (225)
.+++.+++|+.+..+.+.+.... .... . .....+...+.+.+.+..+|+.|+.. +++||+|+++|+||++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~~~l~G~~~t~ADi~ 79 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQT--AGKFCFGDEPTLADIC 79 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCeecCCcCCHHHHH
Confidence 47889999999998777654211 1111 1 12222335567899999999999742 2479999999999999
Q ss_pred HHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCCh
Q 041305 164 FGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPET 211 (225)
Q Consensus 164 l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 211 (225)
+++.+.++... ++++ ..+|+|.+|++++.++|+++++.+.+
T Consensus 80 ~~~~~~~~~~~----~~~~---~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 80 LVPQVYNARRF----GVDL---SPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHHHHHHh----CCCc---ccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 99998876542 3333 67999999999999999999987654
No 72
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.55 E-value=7.2e-14 Score=97.10 Aligned_cols=104 Identities=20% Similarity=0.209 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHHHHhhhHhhhhhhhh-cc---cC----------CHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccc
Q 041305 88 PSDPYDRAVARFWAAYVDEKWFSALRDI-GS---AN----------GAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFG 153 (225)
Q Consensus 88 p~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~---~~----------~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~ 153 (225)
|.++.+++++++|+.+....+.+.+... +. .. .....+.....+.+.++.+|+.|+ +++|++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~----~~~~l~ 77 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLA----KKGYFV 77 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHc----cCCCCC
Confidence 4688899999999999988777665322 11 11 122334556789999999999998 689999
Q ss_pred CCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccc
Q 041305 154 GNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADA 202 (225)
Q Consensus 154 G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 202 (225)
|+++|+||+++++.+.++... +.. ...+|+|.+|++++.++|
T Consensus 78 Gd~~t~ADi~l~~~~~~~~~~----~~~---~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 78 GDKLTAADIMMSFPLEAALAR----GPL---LEKYPNIAAYLERIEARP 119 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHc----Ccc---cccCchHHHHHHHHhcCC
Confidence 999999999999998887543 222 267999999999999986
No 73
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.55 E-value=1.3e-13 Score=95.97 Aligned_cols=117 Identities=23% Similarity=0.376 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHhhhHhhhhh-hhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhH
Q 041305 90 DPYDRAVARFWAAYVDEKWFSAL-RDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYL 168 (225)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l 168 (225)
|+.+++.+++++.+... +...+ ...+.+.. ...+.+.+..||+.|+.. .+++|++| ++|+||+++++.+
T Consensus 1 d~~~ra~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~l~~Le~~L~~~-~~~~fl~G-~~tlADi~l~~~~ 70 (120)
T cd03203 1 DPAKREFADELLAYTDA-FTKALYSSLIKGDP-------SAEAAAALDYIENALSKF-DDGPFFLG-QFSLVDIAYVPFI 70 (120)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCc-------hHHHHHHHHHHHHHHHhc-CCCCCcCC-CccHHHHHHHHHH
Confidence 46789999999988333 33333 22222211 234566778888888742 14799999 9999999999999
Q ss_pred hhHhhH-hhhccccccCcCcchHHHHHHHHHhccccccccCCChHHHHHHh
Q 041305 169 GWLRVT-EKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAELK 218 (225)
Q Consensus 169 ~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 218 (225)
.++... ....++++. ..+|+|.+|++++.++|+++++.++.+++.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~--~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~ 119 (120)
T cd03203 71 ERFQIFLSELFNYDIT--EGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLA 119 (120)
T ss_pred HHHHHHHHHhcCcccc--ccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhh
Confidence 876532 222355542 579999999999999999999999988887754
No 74
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.54 E-value=7.3e-14 Score=97.41 Aligned_cols=110 Identities=21% Similarity=0.234 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhhhHhhhhhhhhcccC-CHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhH
Q 041305 93 DRAVARFWAAYVDEKWFSALRDIGSAN-GAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWL 171 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~ 171 (225)
+++.++++++.+.+ +.....+++... .....+.....+.+.+..||+.|+ +++|++|+++|+||+++++.+.++
T Consensus 2 e~~~id~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~----~~~~l~G~~~T~aDi~l~~~~~~~ 76 (121)
T cd03209 2 ERIRVDMLEQQAMD-LRMGLARICYSPDFEKLKPDYLAKLPDKLKLFSDFLG----DRPWFAGDKITYVDFLLYEALDQH 76 (121)
T ss_pred chHHHHHHHHHHHH-HHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhC----CCCCcCCCCccHHHHHHHHHHHHH
Confidence 57788888888877 555555554433 234445667888999999999998 678999999999999999999888
Q ss_pred hhHhhhccccccCcCcchHHHHHHHHHhccccccccCCChHH
Q 041305 172 RVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDK 213 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 213 (225)
.... ...+ ..+|+|.+|++++.++|+++++++++..
T Consensus 77 ~~~~----~~~~--~~~P~l~~~~~rv~~~p~vk~~~~~~~~ 112 (121)
T cd03209 77 RIFE----PDCL--DAFPNLKDFLERFEALPKISAYMKSDRF 112 (121)
T ss_pred HHhC----cccc--ccChHHHHHHHHHHHCHHHHHHHhcccC
Confidence 6531 1222 6799999999999999999998877653
No 75
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.52 E-value=3.4e-14 Score=97.83 Aligned_cols=105 Identities=16% Similarity=0.251 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhhhHhhhhhhhhc-----c-cCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhh
Q 041305 94 RAVARFWAAYVDEKWFSALRDIG-----S-ANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSY 167 (225)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~ 167 (225)
++.+++|+.+.+..+.+.+...+ . ...+...+.....+.+.+..+|+.|+ +++|++|+++|+||+++++.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~----~~~~l~G~~~t~aDi~l~~~ 77 (113)
T cd03178 2 RYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLA----GRDYLAGDEYSIADIAIFPW 77 (113)
T ss_pred hHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHc----cCCcccCCCCCeeeeeHHHH
Confidence 67889999988887776543321 1 12345566778889999999999998 68999999999999999999
Q ss_pred HhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccC
Q 041305 168 LGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVM 208 (225)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 208 (225)
+.+.... +... ...+|++.+|++++.++|++++++
T Consensus 78 ~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 78 VRRLEWI----GIDD--LDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHHHhc----cccc--hhhchHHHHHHHHHhhCHHHHHhc
Confidence 9887654 2222 267999999999999999999864
No 76
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.52 E-value=5.7e-14 Score=97.52 Aligned_cols=106 Identities=24% Similarity=0.363 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhhhHhhhhhhhhccc---CCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHh
Q 041305 93 DRAVARFWAAYVDEKWFSALRDIGSA---NGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLG 169 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~ 169 (225)
+++++.+|+.+....+.+.....+.. ..+...+.....+.+.+..+|+.|+ +++|++|+++|+||+++++.+.
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~----~~~~l~G~~~s~aDi~l~~~~~ 77 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLE----GSDYVAGDQLTIADLSLVATVS 77 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHc----cCCeeCCCCcCHHHHHHHHHHH
Confidence 47788999988877666555433321 1223345677889999999999998 6789999999999999999999
Q ss_pred hHhhHhhhccccccCcCcchHHHHHHHHHhccccccccC
Q 041305 170 WLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVM 208 (225)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 208 (225)
++... .+.+. ..+|+|.+|++++.++|++++..
T Consensus 78 ~~~~~---~~~~~---~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 78 TLEAL---LPLDL---SKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred HHHHh---cCCCh---hhCchHHHHHHHHHcccchHHHH
Confidence 88642 13332 56999999999999999999744
No 77
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.51 E-value=1.3e-13 Score=96.82 Aligned_cols=113 Identities=23% Similarity=0.209 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhH
Q 041305 92 YDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWL 171 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~ 171 (225)
.+++.++++++.+.+ +...+.+.+........+...+.+.+.+..||+.|+.+. +++|++|+++|+||+++++.+.++
T Consensus 2 ~e~~~vd~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~-~~~~l~G~~~T~ADi~l~~~~~~~ 79 (126)
T cd03210 2 KEAALIDMVNDGVED-LRLKYVRMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNN-GKGFIVGDKISFADYNLFDLLDIH 79 (126)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCeeeCCCccHHHHHHHHHHHHH
Confidence 357788888887766 555555555443344556677789999999999998420 258999999999999999999887
Q ss_pred hhHhhhccccccCcCcchHHHHHHHHHhccccccccCCChH
Q 041305 172 RVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETD 212 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 212 (225)
.... + ..+ ..+|+|.+|++++.++|++++++....
T Consensus 80 ~~~~---~-~~~--~~~P~l~~~~~rv~~~p~v~~~~~~~~ 114 (126)
T cd03210 80 LVLA---P-GCL--DAFPLLKAFVERLSARPKLKAYLESDA 114 (126)
T ss_pred HHhC---h-Hhh--hcChHHHHHHHHHHhCcHHHHHHhCcC
Confidence 6431 1 122 679999999999999999999876654
No 78
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.51 E-value=1.4e-13 Score=95.47 Aligned_cols=106 Identities=22% Similarity=0.310 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhhHhhhhhhhh-----c-----ccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHH
Q 041305 93 DRAVARFWAAYVDEKWFSALRDI-----G-----SANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDI 162 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~ 162 (225)
+++++.+|+.+....+.+..... + ...++...++....+.+.++.||+.|+ +++|++|+++|+||+
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~----~~~~l~G~~~t~aDi 77 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLS----KSKYLAGDSFTLADL 77 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcc----cCcccCCCCccHHHH
Confidence 46788888888776665544321 1 112455566778899999999999998 689999999999999
Q ss_pred HHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhcccccccc
Q 041305 163 AFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDV 207 (225)
Q Consensus 163 ~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 207 (225)
++++.+.++.... .+ .. ...+|+|++|++++.++|+++++
T Consensus 78 ~l~~~~~~~~~~~--~~-~~--~~~~p~l~~~~~~~~~~p~~~~~ 117 (118)
T cd03187 78 SHLPYLQYLMATP--FA-KL--FDSRPHVKAWWEDISARPAWKKV 117 (118)
T ss_pred HHHHHHHHHHHcc--ch-hh--hhcCchHHHHHHHHHhCHHHHhh
Confidence 9999988775421 11 11 25699999999999999999875
No 79
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.50 E-value=3e-13 Score=92.52 Aligned_cols=101 Identities=20% Similarity=0.321 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhhHhhhhhhhhcc-----c---CCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHH
Q 041305 93 DRAVARFWAAYVDEKWFSALRDIGS-----A---NGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAF 164 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~~~-----~---~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l 164 (225)
+++++++|+.+..+.+.+.+...+. . .+....++..+.+.+.+..+|+.|+ +++|++|+++|+||+++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~----~~~~l~g~~~t~aDi~~ 77 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLA----GRPYLAGDRFTLADIPL 77 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhC----CCCcccCCCCCHHHHHH
Confidence 4678899999888877776544321 1 1334456678899999999999998 67999999999999999
Q ss_pred HhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccc
Q 041305 165 GSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAV 204 (225)
Q Consensus 165 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 204 (225)
++.+...... +.. ...+|+|.+|++++.++|++
T Consensus 78 ~~~~~~~~~~----~~~---~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 78 GCSAYRWFEL----PIE---RPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHHHHc----ccc---cccCchHHHHHHHHHhCCCC
Confidence 9988543321 211 36799999999999999985
No 80
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.49 E-value=1.7e-13 Score=95.75 Aligned_cols=111 Identities=19% Similarity=0.276 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhhhHhhhhhhhhcc------cCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhh
Q 041305 94 RAVARFWAAYVDEKWFSALRDIGS------ANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSY 167 (225)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~ 167 (225)
++.+++|+.+.+..+.+.+...+. ..+....+.....+.+.++.+|+.|+ +++|++|+++|+||+++++.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~----~~~~l~G~~~siaDi~l~~~ 77 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLL----KRTYLVGERLTLADIFVAGA 77 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHc----cCceeccCCccHHHHHHHHH
Confidence 678899999988877766543332 12345567788889999999999998 67899999999999999999
Q ss_pred HhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCChH
Q 041305 168 LGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETD 212 (225)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 212 (225)
+.++.... .+...+ ..+|++.+|++++.++|++++++.+.+
T Consensus 78 ~~~~~~~~--~~~~~~--~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 78 LLLGFTYV--FDKEWR--AKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHHHHHHH--cCHHHH--HhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 98874321 111222 569999999999999999999877654
No 81
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.48 E-value=4.8e-13 Score=95.18 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHH---HH-HHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhh
Q 041305 92 YDRAVARFWAAYVDEKWFSALRDIGSANGAEAK---KA-AIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSY 167 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~-~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~ 167 (225)
.+++.++++++.+.+ +...+.++.+....+.. +. ....+.+.+..||+.|..+ +++|++|+++|+||+++++.
T Consensus 2 ~e~a~iD~i~~~v~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~--~~~~l~G~~~T~ADi~l~~~ 78 (137)
T cd03208 2 KERALIDMYVEGTAD-LMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSH--GQDFLVGNKLSRADIHLLEA 78 (137)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCeeeCCCCCHHHHHHHHH
Confidence 367788888888877 44444454443222211 12 2345678999999999743 46899999999999999999
Q ss_pred HhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCCCh
Q 041305 168 LGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPET 211 (225)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 211 (225)
+.++... ....+ ..+|+|.+|++++.++|++++++...
T Consensus 79 l~~~~~~----~~~~l--~~~P~l~~~~~rv~~~P~vk~~~~~~ 116 (137)
T cd03208 79 ILMVEEL----DPSLL--SDFPLLQAFKTRISNLPTIKKFLQPG 116 (137)
T ss_pred HHHHHHh----chhhh--ccChHHHHHHHHHHcCHHHHHHHhcC
Confidence 9987643 11222 67999999999999999999988653
No 82
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.46 E-value=6.6e-13 Score=88.54 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=74.9
Q ss_pred HHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Q 041305 72 VEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAF 151 (225)
Q Consensus 72 ~~yL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~ 151 (225)
++||++..+ ++|.++.+++.+++|+++....+.. .-...+.+.+..+|+.|+ +++|
T Consensus 1 ~r~~~~~~~-----~~~~~~~~~~~vd~~~d~~~~~l~~---------------~~~~~~~~~l~~le~~L~----~~~f 56 (96)
T cd03200 1 ARFLYRLLG-----PAPNAPNAATNIDSWVDTAIFQLAE---------------GSSKEKAAVLRALNSALG----RSPW 56 (96)
T ss_pred CchHHHHhc-----ccCCCchHHHHHHHHHHHHHHHHhc---------------CCHHHHHHHHHHHHHHHc----CCCc
Confidence 478888844 9999999999999999976533321 023556678889999998 6899
Q ss_pred ccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhcc
Q 041305 152 FGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCAD 201 (225)
Q Consensus 152 l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 201 (225)
++|+++|+||+++++.+.+. +.. ...+|+|.+|++++.++
T Consensus 57 l~Gd~~tiADi~l~~~l~~~-------~~~---~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 57 LVGSEFTVADIVSWCALLQT-------GLA---SAAPANVQRWLKSCENL 96 (96)
T ss_pred cCCCCCCHHHHHHHHHHHHc-------ccc---cccChHHHHHHHHHHhC
Confidence 99999999999999887642 222 25699999999999863
No 83
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.45 E-value=2.9e-13 Score=95.05 Aligned_cols=106 Identities=23% Similarity=0.279 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhhhHhhhhhhh---------hcc--cCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHH
Q 041305 94 RAVARFWAAYVDEKWFSALRD---------IGS--ANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDI 162 (225)
Q Consensus 94 ~~~~~~~~~~~~~~l~~~~~~---------~~~--~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~ 162 (225)
++.+++|+.+....+.+.+.. .+. ...++..+...+.+.+.+..+|+.+.+ +++|++|+++|+||+
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~---~~~~l~Gd~~t~ADi 78 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLK---DKPFLAGDEISIADL 78 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCcccCCCCCHHHH
Confidence 355677777776655543321 111 124556677888899999999997542 478999999999999
Q ss_pred HHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhc--cccccccC
Q 041305 163 AFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCA--DAAVKDVM 208 (225)
Q Consensus 163 ~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~--~p~~~~~~ 208 (225)
++++.+.+.... +.+.+ ..+|+|.+|++++.+ +|++++++
T Consensus 79 ~l~~~~~~~~~~----~~~~~--~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 79 SAVCEIMQPEAA----GYDVF--EGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHHHHhc----CCccc--ccCchHHHHHHHHHHhcchhHHHHH
Confidence 999988776543 33332 679999999999999 89998743
No 84
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.43 E-value=2.2e-13 Score=92.24 Aligned_cols=98 Identities=22% Similarity=0.289 Sum_probs=71.8
Q ss_pred HHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhcc
Q 041305 100 WAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNE 179 (225)
Q Consensus 100 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~ 179 (225)
|+.+....+.+.+...+.....+..+.....+.+.+..+|+.|+ +++|++|+++|+||+++++.+.++... +
T Consensus 4 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~----~~~~l~g~~~t~aDi~~~~~~~~~~~~----~ 75 (103)
T cd03207 4 WLFFYAGVVEPALIAKAMGIEEPARMAGFGSYDDVLAALEQALA----KGPYLLGERFTAADVLVGSPLGWGLQF----G 75 (103)
T ss_pred eeeeccccccHHHHHHHcCCCcchhhhhhhhHHHHHHHHHHHHc----cCCcccCCccCHHHHHHHHHHHHHHHc----C
Confidence 33444333443333322222233455567889999999999998 678999999999999999999887642 2
Q ss_pred ccccCcCcchHHHHHHHHHhccccccccCC
Q 041305 180 VKLLDEVKTPGLFKWAERFCADAAVKDVMP 209 (225)
Q Consensus 180 ~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 209 (225)
.+ ..+|+|++|++++.++|+++++..
T Consensus 76 --~~--~~~p~l~~w~~~~~~~p~~~~~~~ 101 (103)
T cd03207 76 --LL--PERPAFDAYIARITDRPAFQRAAA 101 (103)
T ss_pred --CC--CCChHHHHHHHHHHcCHHHHHHhc
Confidence 22 569999999999999999988654
No 85
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.41 E-value=1.3e-12 Score=90.15 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhhh-----ccc-CCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHH
Q 041305 92 YDRAVARFWAAYVDEKWFSALRDI-----GSA-NGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFG 165 (225)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~~~-----~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~ 165 (225)
.++++++.|+.+.++.+.+..... +.. ......+.....+.+.+..+|..|+. +++||+| ++|+||++++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~---~~~~l~G-~fSiAD~~l~ 77 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPP---GAANLFG-EWCIADTDLA 77 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCCcccC-CccHHHHHHH
Confidence 578999999999999887642111 111 11123456677888999999999962 5589999 5999999999
Q ss_pred hhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccCC
Q 041305 166 SYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMP 209 (225)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 209 (225)
+.+.|+... |.++ . |++.+|++++.++|+++++++
T Consensus 78 ~~~~~~~~~----g~~l---~--p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 78 LMLNRLVLN----GDPV---P--ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHHHHHc----CCCC---C--HHHHHHHHHHHCCHHHHHHHh
Confidence 999998764 5544 3 999999999999999998764
No 86
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.39 E-value=2.7e-12 Score=85.46 Aligned_cols=73 Identities=30% Similarity=0.445 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhc
Q 041305 121 AEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCA 200 (225)
Q Consensus 121 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 200 (225)
.+..+.....+.+.|..+|+.|+ +++|++|+++|+||+++++.+.++..... ... .+++|+|.+|++++.+
T Consensus 23 ~~~~~~~~~~~~~~l~~le~~l~----~~~~l~G~~~t~ADi~~~~~~~~~~~~~~----~~~-~~~~P~l~~w~~~~~~ 93 (95)
T PF00043_consen 23 EEMVEEARAKVPRYLEVLEKRLK----GGPYLVGDKLTIADIALFPMLDWLERLGP----DFL-FEKFPKLKKWYERMFA 93 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----TSSSSSBSS-CHHHHHHHHHHHHHHHHTT----TTT-HTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc----CCCeeeccCCchhHHHHHHHHHHHHHhCC----Ccc-cccCHHHHHHHHHHHc
Confidence 34567778899999999999999 79999999999999999999999987632 221 2779999999999999
Q ss_pred cc
Q 041305 201 DA 202 (225)
Q Consensus 201 ~p 202 (225)
+|
T Consensus 94 ~P 95 (95)
T PF00043_consen 94 RP 95 (95)
T ss_dssp SH
T ss_pred CC
Confidence 87
No 87
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.37 E-value=2.1e-12 Score=86.93 Aligned_cols=71 Identities=24% Similarity=0.395 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccc
Q 041305 123 AKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADA 202 (225)
Q Consensus 123 ~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 202 (225)
..++....+.+.+..+|+.|+ +++|++|+++|+||+++++.+.+.... +.. ...+|+|.+|++++.++|
T Consensus 30 ~~~~~~~~~~~~l~~le~~L~----~~~~l~G~~~t~aDi~~~~~~~~~~~~----~~~---~~~~p~l~~~~~~~~~~p 98 (100)
T cd03206 30 DKETAIARAHRLLRLLEEHLA----GRDWLAGDRPTIADVAVYPYVALAPEG----GVD---LEDYPAIRRWLARIEALP 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHc----cCCccCCCCCCHHHHHHHHHHHHHhcc----CCC---hhhCcHHHHHHHHHHhCc
Confidence 456678899999999999998 678999999999999999988754321 222 267999999999999999
Q ss_pred cc
Q 041305 203 AV 204 (225)
Q Consensus 203 ~~ 204 (225)
++
T Consensus 99 ~~ 100 (100)
T cd03206 99 GF 100 (100)
T ss_pred CC
Confidence 75
No 88
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.35 E-value=4.1e-12 Score=79.47 Aligned_cols=68 Identities=32% Similarity=0.417 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHH
Q 041305 122 EAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAER 197 (225)
Q Consensus 122 ~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~ 197 (225)
...+++.+.+.+.++.||..|+ +++|++|++||+||+++++.+.++..... +..+ ...+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~----~~~fl~G~~~s~aD~~l~~~l~~~~~~~~--~~~~--~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLA----DGPFLFGDRPSLADIALAPFLWRLRFVGP--DFDL--LEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----TSSBTTBSS--HHHHHHHHHHHHHHHCTH--TCCH--HTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hCCCCCCCCCCHHHHHHHHHHHHHHHhCc--CcCc--cccCHHHHHHHhC
Confidence 4567889999999999999999 67799999999999999999999987632 2233 3789999999986
No 89
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.33 E-value=1.2e-11 Score=84.06 Aligned_cols=83 Identities=22% Similarity=0.287 Sum_probs=65.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcc------CCCccccCCCCChhHHHHHhhHhhHhhHhhhcccccc--CcCcch
Q 041305 118 ANGAEAKKAAIEQLIEVLVLLEDAFVKCS------KGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLL--DEVKTP 189 (225)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~------~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~--~~~~~p 189 (225)
+.+.+..++....+.+.+..||..|.++. ++++||+|+++|+||+++++.+.++... +.+.. ....+|
T Consensus 21 ~~~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~----~~~~~~~~~~~~P 96 (111)
T cd03204 21 HDNVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL----GLSRRYWGNGKRP 96 (111)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc----CccccccccccCh
Confidence 45667778889999999999999998421 1126999999999999999999988753 22210 025799
Q ss_pred HHHHHHHHHhccccc
Q 041305 190 GLFKWAERFCADAAV 204 (225)
Q Consensus 190 ~l~~~~~~~~~~p~~ 204 (225)
+|.+|++++.++|+|
T Consensus 97 ~l~~w~~rv~aRpsf 111 (111)
T cd03204 97 NLEAYFERVLQRESF 111 (111)
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999999986
No 90
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2.1e-10 Score=89.25 Aligned_cols=174 Identities=20% Similarity=0.204 Sum_probs=124.5
Q ss_pred CChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEE-eCCeeehhhHHHHHHHHHhhCCCCCCCCCC-C
Q 041305 13 PSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI-HNDKPVCESLIIVEYVDEAWSSSGPSILPS-D 90 (225)
Q Consensus 13 ~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~~S~~I~~yL~~~~~~~~~~l~p~-~ 90 (225)
.++-|-.+.+.++.++-|.+++..+- ++ .+|. |++|+|+ ++|..+.+-..|+.+|...-. +-.+-.+ +
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN----~~---~s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~~~--ky~~d~dl~ 85 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN----PW---RSPS-GKLPYLITDNGTKVAGPVKIVQFLKKNTK--KYNLDADLS 85 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC----CC---CCCC-CCCCeEEecCCceeccHHHHHHHHHHhcc--cCCcCccHH
Confidence 78899999999999997766665442 11 2566 8999999 678999999999999988532 1122222 3
Q ss_pred HHHHHHHHHHHHHhhhHhhhhhhhhcc------------------------------------------cCCHHHHHHHH
Q 041305 91 PYDRAVARFWAAYVDEKWFSALRDIGS------------------------------------------ANGAEAKKAAI 128 (225)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------------------~~~~~~~~~~~ 128 (225)
..+.+....|++++++.+.+++...++ +...+..+++.
T Consensus 86 ~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~ 165 (313)
T KOG3028|consen 86 AKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIY 165 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHH
Confidence 566778889999999888766543332 11122334566
Q ss_pred HHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhH-hhhccccccCcCcchHHHHHHHHHhcc
Q 041305 129 EQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVT-EKMNEVKLLDEVKTPGLFKWAERFCAD 201 (225)
Q Consensus 129 ~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~ 201 (225)
....+++..|.+.|+ ..+|++|++||-.|+.++.++..+... .+..-+... ...+++|.+++++++..
T Consensus 166 ~~Aska~~~LS~~Lg----s~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~-l~~~~NL~~~~~~i~s~ 234 (313)
T KOG3028|consen 166 KDASKALNLLSTLLG----SKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVH-LLAHKNLVRYVERIRSL 234 (313)
T ss_pred HHHHHHHHHHHHHhc----CceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHH-HHhcchHHHHHHHHHHH
Confidence 777889999999999 799999999999999999999984332 111111111 13389999999998873
No 91
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.32 E-value=7.7e-12 Score=84.76 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhhhHhhhhhhhhc--------ccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHH
Q 041305 93 DRAVARFWAAYVDEKWFSALRDIG--------SANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAF 164 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l 164 (225)
+++.+++|+.+..+.+.+...... ....++..+....++.+.++.+|..|+ +++|++|+++|+||+++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~----~~~~l~g~~~slaDi~~ 77 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLA----GRDFLVGDALTIADIAL 77 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHc----cCccccCCCCCHHHHHH
Confidence 578899999988776665543321 122455667788999999999999997 67899999999999999
Q ss_pred HhhHhhHhhHhhhccccccCcCcchHHHHHHHHHh
Q 041305 165 GSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFC 199 (225)
Q Consensus 165 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 199 (225)
++.+.++... +.+ ...+|+|.+|+++++
T Consensus 78 ~~~~~~~~~~----~~~---~~~~p~l~~~~~~~~ 105 (105)
T cd03179 78 AAYTHVADEG----GFD---LADYPAIRAWLARIE 105 (105)
T ss_pred HHHHHhcccc----CCC---hHhCccHHHHHHhhC
Confidence 9999887643 333 266999999999874
No 92
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.31 E-value=7.5e-12 Score=78.43 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=49.0
Q ss_pred CCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHH
Q 041305 12 SPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDE 77 (225)
Q Consensus 12 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~ 77 (225)
+.+++|.+++++|++.|+||+.+... . . ...+|. |+||+|++||.+|+||.+|+.||.+
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~--~--~--~~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~ 73 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRA--N--A--EFMSPS-GKVPFIRVGNQIVSEFGPIVQFVEA 73 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecC--C--c--cccCCC-CcccEEEECCEEEeCHHHHHHHHhc
Confidence 34668999999999999999988422 1 1 125787 9999999999999999999999975
No 93
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1e-10 Score=85.49 Aligned_cols=171 Identities=18% Similarity=0.176 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhCCCCCCCCCCCHHHH
Q 041305 15 PFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDR 94 (225)
Q Consensus 15 ~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~~~~~~l~p~~~~~~ 94 (225)
.-|..|..+|+.+++||.++..+ +.++ .+|. |++|.|..|...+.|-..|+.+.....-. -.+.+ +-.++
T Consensus 35 ascLAVqtfLrMcnLPf~v~~~~----Naef--mSP~-G~vPllr~g~~~~aef~pIV~fVeak~~~-l~s~l--sE~qk 104 (257)
T KOG3027|consen 35 ASCLAVQTFLRMCNLPFNVRQRA----NAEF--MSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKGVT-LTSWL--SEDQK 104 (257)
T ss_pred hhHHHHHHHHHHcCCCceeeecC----Cccc--cCCC-CCCceeeecchhhhhhhHHHHHHHHhccc-hhhhh--hhHHH
Confidence 35889999999999999988643 2222 5887 99999999999999999999999876652 11222 45678
Q ss_pred HHHHHHHHHhhhHhhhhhhhhcc-----------------------------------------cCCHHHHHHHHHHHHH
Q 041305 95 AVARFWAAYVDEKWFSALRDIGS-----------------------------------------ANGAEAKKAAIEQLIE 133 (225)
Q Consensus 95 ~~~~~~~~~~~~~l~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~ 133 (225)
+.++..++.+++.+..+=....+ .-+....++..+++..
T Consensus 105 admra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdk 184 (257)
T KOG3027|consen 105 ADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDK 184 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHH
Confidence 88888888888754322111000 0112223566778888
Q ss_pred HHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhH-hhhccc-cccCcCcchHHHHHHHHHhcc
Q 041305 134 VLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVT-EKMNEV-KLLDEVKTPGLFKWAERFCAD 201 (225)
Q Consensus 134 ~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~-~~~~~~-~~~~~~~~p~l~~~~~~~~~~ 201 (225)
....|+..|+ ..+||.|++||=+|..+|+++..+..+ -+.... ..+ ..|++|-+++.|+.++
T Consensus 185 c~~aLsa~L~----~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~l--kkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 185 CCRALSAQLG----SQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANIL--KKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHhc----CCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHH--HHhHHHHHHHHHHHHH
Confidence 8999999998 799999999999999999999877654 111111 122 6799999999998763
No 94
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.29 E-value=3.2e-11 Score=81.63 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhhhHhhhhhhhhcccCC-----HHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhh
Q 041305 93 DRAVARFWAAYVDEKWFSALRDIGSANG-----AEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSY 167 (225)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~ 167 (225)
+++.++.+++...+ +...+.+.++..+ ....+...+.+.+.+..+|+.|... +++|++|+++|+||+++++.
T Consensus 2 e~~~v~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~--~~~~~~G~~~s~aDi~l~~~ 78 (104)
T cd03192 2 EAARVDALVDTIAD-LRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKEN--GGGYLVGDKLTWADLVVFDV 78 (104)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--CCCeeeCCCccHHHHHHHHH
Confidence 46788899888666 6666666665433 4555667888999999999999831 27899999999999999999
Q ss_pred HhhHhhHhhhccccccCcCcchHHHHHHHHH
Q 041305 168 LGWLRVTEKMNEVKLLDEVKTPGLFKWAERF 198 (225)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 198 (225)
+.++.... ... ....+|++.+|++++
T Consensus 79 ~~~~~~~~----~~~-~~~~~p~l~~~~~~~ 104 (104)
T cd03192 79 LDYLLYLD----PKL-LLKKYPKLKALRERV 104 (104)
T ss_pred HHHHHhhC----chh-hHHhChhHHHHHHhC
Confidence 98886542 111 026799999999875
No 95
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.25 E-value=4.3e-11 Score=76.86 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=63.4
Q ss_pred CCeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 4 SDVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 4 ~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
.+++||+.++||+|.+++.+|...|++|+.+.++-.....++...++. .++|++..||..+.++..|.+||+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 579999999999999999999999999999988755444556666777 799999999999999999999984
No 96
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.24 E-value=3.7e-11 Score=82.76 Aligned_cols=75 Identities=15% Similarity=0.341 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhcccc
Q 041305 124 KKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAA 203 (225)
Q Consensus 124 ~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 203 (225)
.+...+.+.+.+..+|..+.+. .+++||+|+ +|+||+++++.+.+.... +.+. .|+|.+|++++.++|+
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~~-~~~~yl~Gd-~T~ADi~l~~~~~~~~~~----~~~~-----~P~l~~~~~rv~~rPs 107 (114)
T cd03194 39 SEAVQADIARIEAIWAECLARF-QGGPFLFGD-FSIADAFFAPVVTRFRTY----GLPL-----SPAAQAYVDALLAHPA 107 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCC-CcHHHHHHHHHHHHHHHc----CCCC-----CHHHHHHHHHHHCCHH
Confidence 3455666777777777777543 157899999 999999999999887542 3222 3999999999999999
Q ss_pred ccccCC
Q 041305 204 VKDVMP 209 (225)
Q Consensus 204 ~~~~~~ 209 (225)
++++++
T Consensus 108 v~~~~~ 113 (114)
T cd03194 108 MQEWIA 113 (114)
T ss_pred HHHHHh
Confidence 998754
No 97
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.22 E-value=2.7e-11 Score=81.33 Aligned_cols=95 Identities=27% Similarity=0.434 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhhhHhhhhhhhhcc--cCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhH
Q 041305 91 PYDRAVARFWAAYVDEKWFSALRDIGS--ANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYL 168 (225)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l 168 (225)
+...+.+++|+++.. ....... .......+...+.+.+.+..+|+.|+.+ +++|++|++||+||+++++.+
T Consensus 3 ~~~~a~i~~W~~f~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~--~~~~l~G~~~T~AD~~v~~~l 75 (99)
T PF14497_consen 3 PYWRALIDRWLDFSV-----AFRRRKARLEKDEASGDFSREELPKALKILEKHLAER--GGDFLVGDKPTLADIAVFGFL 75 (99)
T ss_dssp -TTHHHHHHHHH-GH-----CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHT--SSSSSSSSS--HHHHHHHHHH
T ss_pred hHHHHHHHHHHhccc-----hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcC--CCeeecCCCCCHHHHHHHHHH
Confidence 345677788888441 0000000 0122334667888999999999999965 334999999999999999988
Q ss_pred hhHhhHhhhccccccCcCcchHHHHHHHHHhc
Q 041305 169 GWLRVTEKMNEVKLLDEVKTPGLFKWAERFCA 200 (225)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 200 (225)
..+.. . .+ + ..+|+|.+|++||++
T Consensus 76 ~~~~~-----~-~~-~-~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 76 ASLRW-----A-DF-P-KDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHC-----C-HH-T-TTCHHHHHHHHHHHT
T ss_pred HHHhh-----c-cc-c-cccHHHHHHHHhhcC
Confidence 65552 1 12 1 579999999999975
No 98
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.21 E-value=8e-11 Score=78.71 Aligned_cols=93 Identities=26% Similarity=0.417 Sum_probs=70.7
Q ss_pred HHHHHHhhhHhhhhhhhhccc------CCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhH
Q 041305 98 RFWAAYVDEKWFSALRDIGSA------NGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWL 171 (225)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~ 171 (225)
+.|+.+....+.....+.... ..++..+...+.+.+.++.||+.|+ +++|++|+++|+||+++++.+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~g~~~t~aDi~~~~~l~~~ 77 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLA----GRPYLAGDRFSLADIALAPVLARL 77 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHc----cCCCCCCCCcCHHHHHHHHHHHHH
Confidence 456777777665555544432 2356667788999999999999998 678999999999999999999998
Q ss_pred hhHhhhccccccCcCcchHHHHHHHHH
Q 041305 172 RVTEKMNEVKLLDEVKTPGLFKWAERF 198 (225)
Q Consensus 172 ~~~~~~~~~~~~~~~~~p~l~~~~~~~ 198 (225)
.......+ + ...+|++.+|++++
T Consensus 78 ~~~~~~~~--~--~~~~p~l~~~~~~~ 100 (100)
T cd00299 78 DLLGPLLG--L--LDEYPRLAAWYDRL 100 (100)
T ss_pred HHhhhhhh--h--hccCccHHHHHHhC
Confidence 87632211 1 26699999999874
No 99
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.15 E-value=1.5e-10 Score=76.00 Aligned_cols=70 Identities=23% Similarity=0.161 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHh
Q 041305 126 AAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFC 199 (225)
Q Consensus 126 ~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 199 (225)
+...++.+.++.+|+.|+ +++|++|+++|+||+++++.+.++.......+........+|+|++|++++.
T Consensus 19 ~~~~~~~~~l~~le~~L~----~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLG----DKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhC----CCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 557889999999999999 6799999999999999999998876420000000001256999999999974
No 100
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.11 E-value=3.8e-10 Score=78.89 Aligned_cols=69 Identities=22% Similarity=0.403 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhcc
Q 041305 124 KKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCAD 201 (225)
Q Consensus 124 ~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 201 (225)
.+.....+.+.++.+|+.|+ +++|+.|+++|+||+++++.+.+..... +.++ ...+|+|.+|++|+.++
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~----~~~fl~Gd~~t~AD~~l~~~l~~~~~~~---~~~~--~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 56 REAALANFRAALEPLRATLK----GQPFLGGAAPNYADYIVFGGFQWARIVS---PFPL--LEEDDPVYDWFERCLDL 124 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHc----CCCccCCCCCchhHHHHHHHHHHHHHcC---cccc--cccCChHHHHHHHHhcC
Confidence 34667889999999999998 6899999999999999999999886531 3333 26799999999999863
No 101
>PRK10638 glutaredoxin 3; Provisional
Probab=99.10 E-value=5.6e-10 Score=72.35 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=62.7
Q ss_pred CCCCCeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCC-CchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 1 MAKSDVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGS-KSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 1 M~~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
|+ ++++|+.+.||+|.+++.+|..+|++|+.+.++... ...++.+.++. +++|++..||..+-+...+..+-.
T Consensus 1 m~--~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MA--NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CC--cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHHH
Confidence 66 499999999999999999999999999999887553 44667788998 899999999999998887776543
No 102
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.09 E-value=7.2e-10 Score=69.80 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=49.9
Q ss_pred CChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHh
Q 041305 13 PSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEA 78 (225)
Q Consensus 13 ~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~ 78 (225)
.||+|-++.+.|+.+|++|+.+..+- ...+|. |++|+|+++|..+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n-------~~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN-------PWRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC-------CCCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 78999999999999999998875331 123677 99999999999999999999999864
No 103
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.05 E-value=1.2e-09 Score=68.79 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=60.6
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
+++||..+.||+|.+++-+|...|++|+.+.++.......+...+.. .++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 58999999999999999999999999999988754433344455666 689999999999999999999984
No 104
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.94 E-value=7.6e-09 Score=69.12 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHhhhHhhhhhh-----hhccc-CCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHH
Q 041305 90 DPYDRAVARFWAAYVDEKWFSALR-----DIGSA-NGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIA 163 (225)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~ 163 (225)
|..+++..+++..++...+.+.=. -.+.+ ......+.....+.+.+...+..|.. +++||+|+ .||||..
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~---g~~~LFGe-wsIAD~d 76 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD---GGPNLFGE-WSIADAD 76 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT-----SSTTSS---HHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc---CCCCcccc-chHHHHH
Confidence 457899999999999987654311 11222 22334566677788888888888875 79999995 9999999
Q ss_pred HHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccccccC
Q 041305 164 FGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVM 208 (225)
Q Consensus 164 l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 208 (225)
+++++.++... |.++ .+.+..|.++..++|++++++
T Consensus 77 lA~ml~Rl~~~----gd~v-----P~~l~~Ya~~qwqrpsVQ~Wl 112 (117)
T PF14834_consen 77 LALMLNRLVTY----GDPV-----PERLADYAERQWQRPSVQRWL 112 (117)
T ss_dssp HHHHHHHHHTT----T---------HHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHHHHc----CCCC-----CHHHHHHHHHHHCCHHHHHHH
Confidence 99999999864 4444 578999999999999998764
No 105
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.93 E-value=1e-08 Score=68.62 Aligned_cols=69 Identities=20% Similarity=0.351 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHH
Q 041305 119 NGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERF 198 (225)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 198 (225)
..++..+.....+.+.+..+|+.|+ +++| +++|+||+++++.+.++.... .+..+ ...+|+|.+|+++|
T Consensus 30 ~~~~~~~~~~~~~~~~l~~le~~L~----~~~~---d~~TlADi~l~~~l~~~~~~~--~~~~~--~~~~p~l~~w~~rm 98 (98)
T cd03205 30 RSQPWLERQRGKIERALDALEAELA----KLPL---DPLDLADIAVACALGYLDFRH--PDLDW--RAAHPALAAWYARF 98 (98)
T ss_pred hChHHHHHHHHHHHHHHHHHHHhhh----hCCC---CCCCHHHHHHHHHHHHHHhHc--cCcch--hhhChHHHHHHHhC
Confidence 3556677888999999999999998 5778 899999999999999886531 12222 26799999999985
No 106
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.91 E-value=5.6e-09 Score=74.07 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=39.4
Q ss_pred CCccccCCCCChhHHHHHhhHhhHhhHhhhccc-cccCcCcchHHHHHHHHHhc
Q 041305 148 GKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEV-KLLDEVKTPGLFKWAERFCA 200 (225)
Q Consensus 148 ~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~-~~~~~~~~p~l~~~~~~~~~ 200 (225)
+++|+.|++||+||+++++.+..+.... ++ ++ ..+|+|.+|++||.+
T Consensus 98 ~~~FlaGd~ptIADisvyg~l~s~e~~~---~~~Dl---~~~p~I~~W~eRm~~ 145 (149)
T cd03197 98 DRQFHGGSKPNLADLAVYGVLRSVEGHP---AFKDM---VEETKIGEWYERMDA 145 (149)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHHHHhc---cccch---hhCcCHHHHHHHHHH
Confidence 5789999999999999999998776542 33 33 679999999999986
No 107
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.87 E-value=1.1e-08 Score=64.48 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=56.3
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCC-CCchHHHhhCCCCCccceEEeCCeeehhhHHHH
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG-SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIV 72 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~ 72 (225)
+++||+.+.||+|++++.+|...||+|+.+.++.. ...+++.+.++. +++|++..||..+-+-....
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~ 69 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLK 69 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHH
Confidence 68999999999999999999999999999988643 234567788888 89999998888877665544
No 108
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.85 E-value=6.5e-09 Score=72.79 Aligned_cols=74 Identities=19% Similarity=0.117 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhH-hhhccccccCcCcchHHHHHHHHHh
Q 041305 121 AEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVT-EKMNEVKLLDEVKTPGLFKWAERFC 199 (225)
Q Consensus 121 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~ 199 (225)
....++....+.+.+..|++.|+ +++||+|++||.+|+++++++..+... .+....... ...+|+|.+|++||.
T Consensus 52 r~~~ee~~~~~~~~l~aLs~~Lg----~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~-~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 52 DKTLDQVIEEVDQCCQALSQRLG----TQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEK-VKKYSNLLAFCRRIE 126 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHC----CCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHH-HHhCcHHHHHHHhcC
Confidence 33456778889999999999999 789999999999999999998877532 100011111 267999999999973
No 109
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.78 E-value=2.4e-08 Score=64.22 Aligned_cols=61 Identities=11% Similarity=0.250 Sum_probs=48.5
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeeh
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVC 66 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 66 (225)
+++||+.++||+|.+++-+|..+||+|+.+.++......+....++. .++|+++.++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEe
Confidence 48999999999999999999999999999988754322223344677 79999997775543
No 110
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.78 E-value=3.3e-08 Score=62.10 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=55.9
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCC-CchHHHhhCCCCCccceEEeCCeee--hhhHHHHHHH
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGS-KSELLLKSNPVHKKIPVLIHNDKPV--CESLIIVEYV 75 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l--~~S~~I~~yL 75 (225)
+++||+.++||+|++++.+|...|++|+.+.++... ...++.+.++. +.+|+++.+|..+ +++..|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 489999999999999999999999999988776432 22445677887 8999999888777 5666666654
No 111
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.78 E-value=2.9e-08 Score=70.45 Aligned_cols=75 Identities=23% Similarity=0.245 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhH-hhhccccccCcCcchHHHHHHHHHh
Q 041305 121 AEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVT-EKMNEVKLLDEVKTPGLFKWAERFC 199 (225)
Q Consensus 121 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~ 199 (225)
....++....+.+.+..||+.|+ +++|++|+++|.+|+++++++..+... .+....... ..++|+|.+|++|+.
T Consensus 59 ~~~~~~~~~~a~~~l~~l~~~L~----~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~-~~~~pnL~~~~~ri~ 133 (137)
T cd03212 59 TEVEAEIYRDAKECLNLLSQRLG----ESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNH-LKQCPNLCRFCDRIL 133 (137)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHC----CCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHH-HHHCcHHHHHHHHHH
Confidence 34567778889999999999999 789999999999999999998766532 100011111 267999999999997
Q ss_pred c
Q 041305 200 A 200 (225)
Q Consensus 200 ~ 200 (225)
+
T Consensus 134 ~ 134 (137)
T cd03212 134 S 134 (137)
T ss_pred H
Confidence 5
No 112
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.76 E-value=4.6e-08 Score=61.07 Aligned_cols=69 Identities=19% Similarity=0.170 Sum_probs=58.4
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCC-CchHHHhhCCCCCccceEEeCCeeehhhHHHHHH
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGS-KSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEY 74 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~y 74 (225)
++++|+.+.||+|++++.+|..++++|+.+.++... ...++.+.++. .++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 478999999999999999999999999988776442 34556677887 8999999999999999887653
No 113
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.69 E-value=6.4e-08 Score=60.65 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=52.0
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC-CCchHHHhhCCCCCccceEEeCCeeehhh
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG-SKSELLLKSNPVHKKIPVLIHNDKPVCES 68 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~~S 68 (225)
+++|+.++||+|.+++.+|...|++|+.+.++.. ....++.+.+|. +.+|+++.+|..+.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSGF 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEecC
Confidence 7999999999999999999999999999988754 233456778898 8999999888766554
No 114
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.67 E-value=1.2e-07 Score=60.00 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=55.5
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCC-CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHH
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG-SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYV 75 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL 75 (225)
+++||+.+.||+|.+++-+|...|++|+.+.++.. ....++.........+|++..+|..+-+...+.++-
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHH
Confidence 48999999999999999999999999999988753 112233333443038999999999999988887754
No 115
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.65 E-value=1.4e-07 Score=59.95 Aligned_cols=70 Identities=10% Similarity=0.167 Sum_probs=53.4
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCC-CchHHHhhC-CCCCccceEE-eCCeeehhh--HHHHHHH
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGS-KSELLLKSN-PVHKKIPVLI-HNDKPVCES--LIIVEYV 75 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~-p~~g~vP~L~-~~g~~l~~S--~~I~~yL 75 (225)
+++||+.++||+|++++.+|...|++|+.+.++-.. ....+...+ +. ..+|+++ ++|..+.++ ..|..+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCCHHHHHHHh
Confidence 489999999999999999999999999988776442 234445665 77 7999997 677777665 3444444
No 116
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.50 E-value=4.2e-07 Score=57.09 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=44.9
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCe
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDK 63 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~ 63 (225)
++||+.+.||+|.+++-+|+.+|++|+.+.++......+.+...+. ..+|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 5899999999999999999999999999988754322333344565 68999997554
No 117
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.50 E-value=7e-07 Score=57.10 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=56.8
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCC-CchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGS-KSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
+++|+.+.||+|.+++-+|+..|++|+.+.++... ...++...+.. ..+|++..+|..+-+...+..+-.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHH
Confidence 58999999999999999999999999999887542 23345555666 689999999999888887776544
No 118
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.46 E-value=4.1e-07 Score=54.95 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=48.7
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCC-CCchHHHhhCCCCCccceEEeCCeee
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG-SKSELLLKSNPVHKKIPVLIHNDKPV 65 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l 65 (225)
+++|+.+.||+|.+++-+|...|++|+.+.++.. ....++.+.+.. .++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 5899999999999999999999999999999865 334445555565 6899999888754
No 119
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.7e-06 Score=55.40 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=53.6
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCC--CchHHH-hhCCCCCccceEEeCCeeehhhHHHHHH
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGS--KSELLL-KSNPVHKKIPVLIHNDKPVCESLIIVEY 74 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~--~~~~~~-~~~p~~g~vP~L~~~g~~l~~S~~I~~y 74 (225)
.+++|..+.||||.+++-+|..+|++|+++.++... ...+.. ..++. .++|++..||..+.....+.++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHHH
Confidence 389999999999999999999999999999887554 333344 44577 7999999888766654444433
No 120
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.41 E-value=2.1e-06 Score=55.73 Aligned_cols=75 Identities=20% Similarity=0.351 Sum_probs=60.4
Q ss_pred CeEEeccCCChHHHHHHHHHHh-----hCCcceEEEccCCC-CchHHHhhC--CCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 5 DVKVLGFSPSPFVMRARIALKI-----KSVEYEFLEENLGS-KSELLLKSN--PVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~-----~gi~~~~~~~~~~~-~~~~~~~~~--p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
++++|+.++||+|.+++-+|.. .|++|+.+.++... ...++.... +. -.+|++..||..+.+...|.+++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~-~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPV-ETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCC-CcCCEEEECCEEEcCHHHHHHHHH
Confidence 3899999999999999999999 89999999887431 123343322 22 379999999999999999999998
Q ss_pred HhhC
Q 041305 77 EAWS 80 (225)
Q Consensus 77 ~~~~ 80 (225)
+.++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 8775
No 121
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.39 E-value=3.8e-06 Score=56.14 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=57.4
Q ss_pred CCCeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchH----HHhhCCCCCccceEEeCCeeehhhHHHHHH
Q 041305 3 KSDVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSEL----LLKSNPVHKKIPVLIHNDKPVCESLIIVEY 74 (225)
Q Consensus 3 ~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~----~~~~~p~~g~vP~L~~~g~~l~~S~~I~~y 74 (225)
+.++++|+.++||||.+++-+|...|++|+.+.++......+ +...+.. .++|.+..+|..+-+...+...
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHH
Confidence 467999999999999999999999999999999885433222 3344666 6999999999988888777653
No 122
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.34 E-value=5e-06 Score=53.37 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=59.2
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCch----HHHhhCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSE----LLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~----~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
++++|+.++||+|.+++-+|...+++|+.+.++...... .+.+.+.. ..+|++..+|..+.++..|.++..
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHH
Confidence 478999999999999999999999999999888654322 23455665 689999999999999999988765
No 123
>PHA03050 glutaredoxin; Provisional
Probab=98.28 E-value=8e-06 Score=55.38 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCCeEEeccCCChHHHHHHHHHHhhCC---cceEEEccCCCC----chHHHhhCCCCCccceEEeCCeeehhhHHHHH
Q 041305 3 KSDVKVLGFSPSPFVMRARIALKIKSV---EYEFLEENLGSK----SELLLKSNPVHKKIPVLIHNDKPVCESLIIVE 73 (225)
Q Consensus 3 ~~~~~L~~~~~s~~~~~v~~~L~~~gi---~~~~~~~~~~~~----~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~ 73 (225)
+.++++|..++||||.+++-+|...|+ +|+.+.++-... ..++.+.+.. .+||.+..+|..+-+...+..
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 457999999999999999999999999 788888874322 2345566776 699999999998888776655
No 124
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.25 E-value=7.8e-06 Score=53.17 Aligned_cols=74 Identities=19% Similarity=0.328 Sum_probs=57.1
Q ss_pred eEEeccCCChHHHHHHHHHHhhC-----CcceEEEccCCC-CchHHHhhCC--CCCccceEEeCCeeehhhHHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKS-----VEYEFLEENLGS-KSELLLKSNP--VHKKIPVLIHNDKPVCESLIIVEYVDE 77 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~g-----i~~~~~~~~~~~-~~~~~~~~~p--~~g~vP~L~~~g~~l~~S~~I~~yL~~ 77 (225)
+++|+.++||+|.+++-+|...+ ++|+.+.++... ...++....- . ..||++..||..+-++..|..++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~-~tVP~ifi~g~~igG~~dl~~~~~~ 80 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPV-ETVPQIFVDEKHVGGCTDFEQLVKE 80 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCC-CCcCeEEECCEEecCHHHHHHHHHh
Confidence 68999999999999999999984 567777766321 1233433322 2 4899999999999999999999988
Q ss_pred hhC
Q 041305 78 AWS 80 (225)
Q Consensus 78 ~~~ 80 (225)
.++
T Consensus 81 ~~~ 83 (86)
T TIGR02183 81 NFD 83 (86)
T ss_pred ccc
Confidence 765
No 125
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.14 E-value=1.5e-05 Score=53.07 Aligned_cols=71 Identities=20% Similarity=0.134 Sum_probs=54.0
Q ss_pred CCCeEEecc-----CCChHHHHHHHHHHhhCCcceEEEccCC-CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHH
Q 041305 3 KSDVKVLGF-----SPSPFVMRARIALKIKSVEYEFLEENLG-SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEY 74 (225)
Q Consensus 3 ~~~~~L~~~-----~~s~~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~y 74 (225)
++++.+|.- +.||||.+++-+|...|++|+.+.++-. ....++.+.+.. .++|.+..+|..+-+...+...
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l 87 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEM 87 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHH
Confidence 467888854 8999999999999999999998877532 111233455666 6899999999988777776653
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.07 E-value=4.1e-05 Score=49.24 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=56.9
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCc--ceEEEccCCCCchH----HHhhCCCCCccceEEeCCeeehhhHHHHHHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVE--YEFLEENLGSKSEL----LLKSNPVHKKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~--~~~~~~~~~~~~~~----~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
+++|+-++||+|.+++-+|...+++ |+.+.++....... +.+.... ..+|.+..+|..+.++..+.+...
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYK 76 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHH
Confidence 4789999999999999999999999 98888876533332 3445555 689999999999999988887664
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.03 E-value=3.6e-05 Score=50.47 Aligned_cols=71 Identities=15% Similarity=0.065 Sum_probs=55.3
Q ss_pred CCeEEecc-----CCChHHHHHHHHHHhhCCcceEEEccCCC-CchHHHhhCCCCCccceEEeCCeeehhhHHHHHHH
Q 041305 4 SDVKVLGF-----SPSPFVMRARIALKIKSVEYEFLEENLGS-KSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYV 75 (225)
Q Consensus 4 ~~~~L~~~-----~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL 75 (225)
.++++|.- ++||||.+++-+|...|++|+.+.++... ...++.+.+.. .++|.+..+|..|-+...+.+..
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHH
Confidence 56788855 69999999999999999999999886431 22334455666 68999999999988888777643
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.84 E-value=0.00011 Score=45.85 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=47.7
Q ss_pred CChHHHHHHHHHHhhCCc---ceEEEccCCCCchHHHhhCCCCCccceEEe-CCeeehhhHHHHHHH
Q 041305 13 PSPFVMRARIALKIKSVE---YEFLEENLGSKSELLLKSNPVHKKIPVLIH-NDKPVCESLIIVEYV 75 (225)
Q Consensus 13 ~s~~~~~v~~~L~~~gi~---~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~~S~~I~~yL 75 (225)
.+|-|-.+...|..++.+ |+.+..+- + ..+|. |++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n----~---~~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN----P---WLSPT-GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC----C---CcCCC-CCCCEEEECCCcEEECHHHHHHhh
Confidence 789999999999999999 88776541 2 24787 99999998 999999999999998
No 129
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.54 E-value=0.00045 Score=49.40 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=53.7
Q ss_pred CeEEeccC------CChHHHHHHHHHHhhCCcceEEEccCC-CCchHHHhhCC----CCCccceEEeCCeeehhhHHHHH
Q 041305 5 DVKVLGFS------PSPFVMRARIALKIKSVEYEFLEENLG-SKSELLLKSNP----VHKKIPVLIHNDKPVCESLIIVE 73 (225)
Q Consensus 5 ~~~L~~~~------~s~~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~~~~p----~~g~vP~L~~~g~~l~~S~~I~~ 73 (225)
+++||..+ .+|+|.+++-+|+..+|+|+++.+++. ....++.+... . ..+|.+..+|..|-+...+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~-~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKA-VSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 47899999 899999999999999999999988764 22344444322 3 589999999998888877766
No 130
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.51 E-value=0.00048 Score=57.95 Aligned_cols=68 Identities=10% Similarity=0.197 Sum_probs=52.7
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHH-h--------hCCCCCccceEEeCCeeehhhHHHHH
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLL-K--------SNPVHKKIPVLIHNDKPVCESLIIVE 73 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~-~--------~~p~~g~vP~L~~~g~~l~~S~~I~~ 73 (225)
++++|+.+.||+|.+++-+|...||+|+.+.++-.....++. . .+.. ..||++..||..+.+-..+..
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHHH
Confidence 499999999999999999999999999999887332222322 1 1344 589999988888877766655
No 131
>PRK10824 glutaredoxin-4; Provisional
Probab=97.50 E-value=0.00068 Score=46.35 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=54.7
Q ss_pred CCCeEEecc-----CCChHHHHHHHHHHhhCCcceEEEccCC-CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHH
Q 041305 3 KSDVKVLGF-----SPSPFVMRARIALKIKSVEYEFLEENLG-SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEY 74 (225)
Q Consensus 3 ~~~~~L~~~-----~~s~~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~y 74 (225)
++++.+|.- |.||||.++.-+|...|++|+.+.++-. .....+.+.+-. .++|-+-.+|..|-+...+...
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHH
Confidence 356778865 5999999999999999999998877643 122334556666 7999999999999888777664
No 132
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=8.2e-05 Score=62.64 Aligned_cols=119 Identities=16% Similarity=0.258 Sum_probs=83.6
Q ss_pred eCCeeehhhHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHH
Q 041305 60 HNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLE 139 (225)
Q Consensus 60 ~~g~~l~~S~~I~~yL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le 139 (225)
.+|..+.++..+..|..+... ..+.++|.+ .++.+++.|+++.... ....+...+..++
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~-~~~~lf~~~-~d~~~vd~w~~~s~~~-------------------~~~~~s~~~~~ld 101 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAK-ADPKLFGNN-IDRSQVDHWVSFSSTF-------------------SFDEISSSLSELD 101 (712)
T ss_pred cccccccCCccchhhhhhhcc-cCHhHcCCc-ccHHHHHHHHHHhhhc-------------------chHHHHHHHHHHH
Confidence 457778888888888775444 245688876 7899999999887651 1356777888888
Q ss_pred HHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccC-cCcchHHHHHHHHHhccccccccC
Q 041305 140 DAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLD-EVKTPGLFKWAERFCADAAVKDVM 208 (225)
Q Consensus 140 ~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~-~~~~p~l~~~~~~~~~~p~~~~~~ 208 (225)
..|. -++||+|.++|+||+++|..+..-..... .+. ...+-++.+|++-....++.+.+.
T Consensus 102 ~~l~----~~t~lvg~sls~Ad~aiw~~l~~n~~~~~-----~lk~~k~~~~v~Rw~~~~~~~~a~~~v~ 162 (712)
T KOG1147|consen 102 KFLV----LRTFLVGNSLSIADFAIWGALHSNGMRQE-----QLKAKKDYQNVERWYDLPEFQEAHNKVL 162 (712)
T ss_pred hhhh----HHHHhhccchhHHHHHHHHHHhcccchHH-----HHHhhCCchhhhhhcCcHhHHHHHHHHH
Confidence 8888 68999999999999999999985433211 111 234678889988444444444333
No 133
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.47 E-value=0.00047 Score=48.23 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccc
Q 041305 125 KAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAV 204 (225)
Q Consensus 125 ~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 204 (225)
.+...+++..|..+|..+. .....-| ++|+-|+.+|+.|+.+..+ .|+.+ -|+|++|++++.+...+
T Consensus 58 ~~~i~~l~~~L~~Le~ll~----~~~~~n~-~LS~dDi~lFp~LR~Ltiv---kgi~~-----P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 58 PELIAELNADLEELEPLLA----SPNAVNG-ELSIDDIILFPILRSLTIV---KGIQW-----PPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-S----CTTBTTS-S--HHHHHHHHHHHHHCTC---TTS--------HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHhc----cccccCC-CCCHHHHHHHHHHhhhhhc---cCCcC-----CHHHHHHHHHHHHHcCC
Confidence 5567888888888988887 3444444 8999999999999988775 35555 58999999999987654
No 134
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.27 E-value=0.0017 Score=45.09 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhccccc
Q 041305 125 KAAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAV 204 (225)
Q Consensus 125 ~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 204 (225)
.+...+++..|..++..+.. ... .++.+|+-|+.+|+.|+.+..+ .|+.+ -|+|.+|+++|.+.-.+
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~----~~~-~n~~ls~DDi~lFp~LR~Lt~v---kgi~~-----P~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 59 PQYIAALNALLEELDPLILS----SEA-VNGQLSTDDIILFPILRNLTLV---KGLVF-----PPKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcC----ccc-cCCcCCHHHHHHHHHHhhhhhh---cCCCC-----CHHHHHHHHHHHHHhCC
Confidence 35577888888999998852 333 3557999999999999988875 35555 57899999999987654
No 135
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0016 Score=40.01 Aligned_cols=63 Identities=30% Similarity=0.330 Sum_probs=48.6
Q ss_pred CCCCCeEEeccCCChHHHHHHHHHHhhCCcceEEEccCC-----------CCchHHH--hhCCCCCccceEE-eCCeeeh
Q 041305 1 MAKSDVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG-----------SKSELLL--KSNPVHKKIPVLI-HNDKPVC 66 (225)
Q Consensus 1 M~~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~~~~~--~~~p~~g~vP~L~-~~g~~l~ 66 (225)
||. .+||+...||-|....-.|+-.+++|+.++|.-+ +..++|- +.|.. -.+|+|. +||.++.
T Consensus 1 msk--p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~~d~~vVl 77 (85)
T COG4545 1 MSK--PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLTDDGKVVL 77 (85)
T ss_pred CCC--ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEeCCCcEEE
Confidence 664 6999999999999999999999999999998533 3344443 23444 5699997 7777765
No 136
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.95 E-value=0.0032 Score=38.44 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=40.0
Q ss_pred CeEEeccCCChHHHHHHHHHHhh-----CCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeeh
Q 041305 5 DVKVLGFSPSPFVMRARIALKIK-----SVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVC 66 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~-----gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 66 (225)
++++|+.++||+|.+++-+|... ++++..+.++ .. +++...... ..+|++..+|+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~~-~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA--EF-PDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc--cC-HhHHHHcCC-cccCEEEECCEEEE
Confidence 47899999999999998888765 4555555443 22 334444444 47999998777654
No 137
>PTZ00062 glutaredoxin; Provisional
Probab=96.92 E-value=0.0047 Score=46.78 Aligned_cols=69 Identities=19% Similarity=0.056 Sum_probs=52.6
Q ss_pred CCeEEecc-----CCChHHHHHHHHHHhhCCcceEEEccCCC-CchHHHhhCCCCCccceEEeCCeeehhhHHHHH
Q 041305 4 SDVKVLGF-----SPSPFVMRARIALKIKSVEYEFLEENLGS-KSELLLKSNPVHKKIPVLIHNDKPVCESLIIVE 73 (225)
Q Consensus 4 ~~~~L~~~-----~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~ 73 (225)
.++.||.- |.||||.++.-+|...|++|+...++-+. ....+.+.+.. .++|.+..+|..|-+...+.+
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHH
Confidence 46778844 68999999999999999999988776332 12334455666 689999999998877776665
No 138
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.013 Score=39.34 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=56.8
Q ss_pred CCeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHH----HhhCCCCCccceEEeCCeeehhhHHHHHH
Q 041305 4 SDVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELL----LKSNPVHKKIPVLIHNDKPVCESLIIVEY 74 (225)
Q Consensus 4 ~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~----~~~~p~~g~vP~L~~~g~~l~~S~~I~~y 74 (225)
..+.+|.=++||||.+++-+|.-.|+++..+++|......++ .+..-. .++|.+..+|+.+-....+..+
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMAL 87 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHH
Confidence 568899999999999999999999999999999876444444 234545 5899999999988777777654
No 139
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.80 E-value=0.0031 Score=43.00 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=30.7
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccC
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENL 38 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~ 38 (225)
++||+.+.||+|++++-+|+.+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999998753
No 140
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.70 E-value=0.0047 Score=41.58 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=30.2
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
+++|+.+.||+|++++-+|..+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 58999999999999999999999999999875
No 141
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.70 E-value=0.0029 Score=44.50 Aligned_cols=32 Identities=9% Similarity=0.039 Sum_probs=30.5
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
+++|+.+.|++|++++-+|..+||+|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 79999999999999999999999999999875
No 142
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.58 E-value=0.0063 Score=41.73 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=30.4
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
+++|+.+.|++|++++-+|..+|++|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 79999999999999999999999999999875
No 143
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.36 E-value=0.01 Score=41.66 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=31.0
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccC
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENL 38 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~ 38 (225)
+++|+.+.|+.|++++-+|..+|++|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 799999999999999999999999999998753
No 144
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.33 E-value=0.012 Score=41.41 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=31.0
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccC
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENL 38 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~ 38 (225)
+++|+.+.|+.|++++-+|..+|++|+++.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 799999999999999999999999999998753
No 145
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.28 E-value=0.0073 Score=41.55 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=29.9
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
+++|+.+.||+|++++-+|...|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999998775
No 146
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.06 E-value=0.012 Score=40.29 Aligned_cols=32 Identities=13% Similarity=-0.011 Sum_probs=30.3
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
++||+.+.|+-|++++-+|+.+|++|+++.+-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 89999999999999999999999999999764
No 147
>PRK10026 arsenate reductase; Provisional
Probab=96.02 E-value=0.012 Score=41.77 Aligned_cols=35 Identities=6% Similarity=0.013 Sum_probs=32.0
Q ss_pred CCCCCeEEeccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 1 MAKSDVKVLGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 1 M~~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
|+ .+++|+.+.|.-|++++-+|+.+|++|+++.+-
T Consensus 1 m~--~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 1 MS--NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CC--EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 65 399999999999999999999999999999864
No 148
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.01 E-value=0.012 Score=39.65 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=30.1
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
+++|+.+.|+.|++++-+|...|++|+++.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999999875
No 149
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.045 Score=35.94 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=50.8
Q ss_pred CCeEEe-----ccCCChHHHHHHHHHHhhC-CcceEEEccCCCCchHHH----hhCCCCCccceEEeCCeeehhhHHHHH
Q 041305 4 SDVKVL-----GFSPSPFVMRARIALKIKS-VEYEFLEENLGSKSELLL----KSNPVHKKIPVLIHNDKPVCESLIIVE 73 (225)
Q Consensus 4 ~~~~L~-----~~~~s~~~~~v~~~L~~~g-i~~~~~~~~~~~~~~~~~----~~~p~~g~vP~L~~~g~~l~~S~~I~~ 73 (225)
+++.|| .+|.|+||.++-=+|..+| ++|..+.|-. +++++ ..+-+ .++|-|-.+|+.+-+|..|.+
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~---d~eiR~~lk~~s~W-PT~PQLyi~GEfvGG~DIv~E 90 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQ---DPEIRQGLKEYSNW-PTFPQLYVNGEFVGGCDIVRE 90 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeecc---CHHHHhccHhhcCC-CCCceeeECCEEeccHHHHHH
Confidence 457777 5789999999999999999 5665554432 24443 34666 789999899999999988776
Q ss_pred HH
Q 041305 74 YV 75 (225)
Q Consensus 74 yL 75 (225)
-.
T Consensus 91 m~ 92 (105)
T COG0278 91 MY 92 (105)
T ss_pred HH
Confidence 44
No 150
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.72 E-value=0.14 Score=32.66 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=39.2
Q ss_pred CeEEeccCCChHHHHHHHHHHhh--CCcceEEEccCCCCchHHHhhCCCCCccceEEeCC
Q 041305 5 DVKVLGFSPSPFVMRARIALKIK--SVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHND 62 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~--gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g 62 (225)
+++||+-++|+.|..++-+|+.. ..+++...+|.... +++...-- -.||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d-~~l~~~Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED-PELFEKYG--YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT-HHHHHHSC--TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC-HHHHHHhc--CCCCEEEEcC
Confidence 48999999999999999999964 45677777777543 44444333 2799999666
No 151
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=95.44 E-value=0.1 Score=34.22 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=47.6
Q ss_pred eEEeccCCCh------HHHHHHHHHHhhCCcceEEEccCCC-CchHHHhhC----CCCCccceEEeCCeeehhhHHHHH
Q 041305 6 VKVLGFSPSP------FVMRARIALKIKSVEYEFLEENLGS-KSELLLKSN----PVHKKIPVLIHNDKPVCESLIIVE 73 (225)
Q Consensus 6 ~~L~~~~~s~------~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~----p~~g~vP~L~~~g~~l~~S~~I~~ 73 (225)
+++|+.+.|+ .|++++.+|.-+||+|+++.++.+. ...++.+.. +. ..+|-+..++..+-+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHH
Confidence 6788777554 4668899999999999999998652 223334332 34 578988888888877655544
No 152
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.31 E-value=0.11 Score=32.63 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=39.5
Q ss_pred eEEeccCCChHHHHH----HHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeee
Q 041305 6 VKVLGFSPSPFVMRA----RIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPV 65 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v----~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l 65 (225)
+.+|. ++||.|..+ .-+++..|++++.+.++ . ..+..+.+- ..+|++..||..+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~~a~~~~v--~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MNEILEAGV--TATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HHHHHHcCC--CcCCEEEECCEEE
Confidence 67777 999999988 66888889988888887 1 223334444 4799999777654
No 153
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.23 E-value=0.06 Score=36.97 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=30.8
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
++++|+.|.|.-|++++-+|+..||+|+++.+-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 389999999999999999999999999998764
No 154
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.20 E-value=0.21 Score=31.35 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=38.6
Q ss_pred CeEEeccCCChHHHHHHHHHHh----hCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCe
Q 041305 5 DVKVLGFSPSPFVMRARIALKI----KSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDK 63 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~ 63 (225)
++++|+.++||+|..+.-.|+. .+..+....+|..... +..+.... ..+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-QKAMEYGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-HHHHHcCC-ccCCEEEECCE
Confidence 4789999999999988777653 3444666666754433 33333444 57999986665
No 155
>PRK10853 putative reductase; Provisional
Probab=95.06 E-value=0.045 Score=37.68 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=30.1
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
+++|+.+.|.-|++++-+|+..|++|+.+.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 79999999999999999999999999999764
No 156
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=94.81 E-value=0.054 Score=37.76 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=30.7
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
.++||+.+.|.-|++++-+|+..|++|+.+.+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 489999999999999999999999999999764
No 157
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.40 E-value=0.17 Score=29.23 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=35.3
Q ss_pred eEEeccCCChHHHHHHHHHH-----hhCCcceEEEccCCCCchHHHhhCCCCCccceEE
Q 041305 6 VKVLGFSPSPFVMRARIALK-----IKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI 59 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~-----~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~ 59 (225)
+.+|+...|++|++.+..+. ..++.+..+.++............+. ..+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEE
Confidence 46788889999999999998 44555555554432222222245676 7999997
No 158
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.31 E-value=0.079 Score=36.09 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=29.6
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
+++|+.+.|.-|++++-+|+..|++|+.+.+-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999998763
No 159
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.31 E-value=0.16 Score=34.14 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHhh---CCcceEEEccCCCCchHHH-hhCCCCCccceEE-eCCe-------------eehhhHHHHHH
Q 041305 13 PSPFVMRARIALKIK---SVEYEFLEENLGSKSELLL-KSNPVHKKIPVLI-HNDK-------------PVCESLIIVEY 74 (225)
Q Consensus 13 ~s~~~~~v~~~L~~~---gi~~~~~~~~~~~~~~~~~-~~~p~~g~vP~L~-~~g~-------------~l~~S~~I~~y 74 (225)
.||.|..+.=+|... .-..+++.|+......... -+...+-.+|+|+ .+|. .|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 688888888777764 2235666666543333333 2333224689998 4443 79999999999
Q ss_pred HHHhhC
Q 041305 75 VDEAWS 80 (225)
Q Consensus 75 L~~~~~ 80 (225)
|+++++
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999998
No 160
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=94.31 E-value=0.079 Score=36.24 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=29.7
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
+++|+.+.|.-|++++-+|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999998764
No 161
>PHA02125 thioredoxin-like protein
Probab=93.99 E-value=0.27 Score=30.67 Aligned_cols=51 Identities=16% Similarity=0.321 Sum_probs=36.6
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEe
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIH 60 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~ 60 (225)
+.+|+.++|+.|+.+.-.|+ ++.++...+|... ..++.....- ..+|++..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~-~~~l~~~~~v-~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDE-GVELTAKHHI-RSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCC-CHHHHHHcCC-ceeCeEEC
Confidence 78999999999999887775 4566666666533 3455544444 58999983
No 162
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.76 E-value=0.23 Score=32.30 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=38.4
Q ss_pred CeEEeccCCChHHHHHHHHHHhh-----CCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeeh
Q 041305 5 DVKVLGFSPSPFVMRARIALKIK-----SVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVC 66 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~-----gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 66 (225)
.+.+|..++|++|..+.-++... ++.++.+.++ ..++...+.+- ..+|.++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~~~e~a~~~~V--~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--LFQDEVEERGI--MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--hCHHHHHHcCC--ccCCEEEECCEEEE
Confidence 58899999999999887766554 4555555443 44333344444 47999987776543
No 163
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=91.71 E-value=0.8 Score=30.42 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=37.1
Q ss_pred eEEeccCCChH------HHHHHHHHHhhCCcceEEEccCCC-CchHHHhhC---------CCCCccceEEeCCeeehhhH
Q 041305 6 VKVLGFSPSPF------VMRARIALKIKSVEYEFLEENLGS-KSELLLKSN---------PVHKKIPVLIHNDKPVCESL 69 (225)
Q Consensus 6 ~~L~~~~~s~~------~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~---------p~~g~vP~L~~~g~~l~~S~ 69 (225)
+++|....|+. .+++..+|+.++|+|+.+.+..+. ...++.+.. +. ...|-+..|+..+-+-.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~-~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGK-PLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEEEEEHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCC-CCCCEEEeCCEEEeeHH
Confidence 78888776654 568999999999999999887652 223333333 22 23467777776554444
Q ss_pred HH
Q 041305 70 II 71 (225)
Q Consensus 70 ~I 71 (225)
.+
T Consensus 82 ~f 83 (99)
T PF04908_consen 82 DF 83 (99)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 164
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=91.47 E-value=0.55 Score=34.50 Aligned_cols=42 Identities=29% Similarity=0.327 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhhccCCCccccCCC-CChhHHHHHhhHhhHh
Q 041305 130 QLIEVLVLLEDAFVKCSKGKAFFGGNQ-IGFLDIAFGSYLGWLR 172 (225)
Q Consensus 130 ~~~~~l~~le~~L~~~~~~~~~l~G~~-~t~AD~~l~~~l~~~~ 172 (225)
...+.+..|++.|+... ..+|++|+. +|-.||.+++.+.-+.
T Consensus 112 ~a~~~l~~L~~~L~~~~-~~~~~f~~~~psslD~L~~ayL~l~l 154 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWE-EARYFFGDSKPSSLDCLAFAYLALLL 154 (168)
T ss_pred HHHHHHHHHHHHHhhcc-ccccccCCCCCCHHHHHHHHHHHHHh
Confidence 46678889999998311 128899877 9999999999998654
No 165
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=90.87 E-value=1.1 Score=27.88 Aligned_cols=56 Identities=25% Similarity=0.239 Sum_probs=35.7
Q ss_pred eEEeccCCChHHHHHHH----HHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehh
Q 041305 6 VKVLGFSPSPFVMRARI----ALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCE 67 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~----~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~ 67 (225)
+++ ..+.||+|..+.- ++...|+.++.+.+ ...++..+ ... ..+|+|+.||...+.
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~~~-ygv-~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEIEK-YGV-MSVPALVINGKVVFV 62 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHHHH-TT--SSSSEEEETTEEEEE
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHHHH-cCC-CCCCEEEECCEEEEE
Confidence 677 5667999996654 55556777766654 23444433 333 589999987776443
No 166
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=86.90 E-value=0.96 Score=30.55 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=22.9
Q ss_pred eccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 9 LGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 9 ~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
|+.+.|.-|++++-+|+..|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78899999999999999999999998764
No 167
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.69 E-value=2.5 Score=32.33 Aligned_cols=70 Identities=14% Similarity=0.063 Sum_probs=51.7
Q ss_pred CeEEe-----ccCCChHHHHHHHHHHhhCCcceEEEccCCC-CchHHHhhCCCCCccceEEeCCeeehhhHHHHHHH
Q 041305 5 DVKVL-----GFSPSPFVMRARIALKIKSVEYEFLEENLGS-KSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYV 75 (225)
Q Consensus 5 ~~~L~-----~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL 75 (225)
+++|| -.|.|+|++.+.-+|...|++|+...|--+. -..-+...+-+ .+.|=|-.+|..+-+...|.+-+
T Consensus 140 ~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdW-PTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 140 PVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDW-PTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred eEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCC-CCccceeECCEeccCcHHHHHHh
Confidence 45565 4679999999999999999999888765321 11222345776 78999989999888887776544
No 168
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=82.67 E-value=10 Score=24.38 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=44.1
Q ss_pred CeEEeccCCChHHHHHHHHH-----HhhCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCeee------hhhHHH
Q 041305 5 DVKVLGFSPSPFVMRARIAL-----KIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKPV------CESLII 71 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L-----~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l------~~S~~I 71 (225)
-+.+++.++|+.|+...=.+ .+.+ ++....+|.... ..+...--. ..+|.+. .+|..+ .+...|
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN-KELCKKYGV-KSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS-HHHHHHTTC-SSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred EEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc-chhhhccCC-CCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 46777888999999876433 2333 566666665433 444444444 5899997 566533 355677
Q ss_pred HHHHHH
Q 041305 72 VEYVDE 77 (225)
Q Consensus 72 ~~yL~~ 77 (225)
.++|.+
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 777765
No 169
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=78.81 E-value=1.1 Score=30.81 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=13.4
Q ss_pred ccceEE--eCCeeehhhHHHHHHHHHhhC
Q 041305 54 KIPVLI--HNDKPVCESLIIVEYVDEAWS 80 (225)
Q Consensus 54 ~vP~L~--~~g~~l~~S~~I~~yL~~~~~ 80 (225)
..|-|. .+|..++|++||++||..-|.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 347774 467889999999999998776
No 170
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=76.82 E-value=17 Score=23.55 Aligned_cols=58 Identities=9% Similarity=0.087 Sum_probs=34.9
Q ss_pred eEEeccCCChHHHHHHHHHHh----hCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCeee
Q 041305 6 VKVLGFSPSPFVMRARIALKI----KSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKPV 65 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l 65 (225)
+.+|+.++|+.|....-.+.. .+-.+....+|.+. .+++....-. ..+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~-~~~l~~~~~v-~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE-DQEIAEAAGI-MGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC-CHHHHHHCCC-eeccEEEEEECCeEE
Confidence 567777899999988666644 12134555666543 3444433333 4789886 566543
No 171
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=76.66 E-value=12 Score=24.52 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=31.5
Q ss_pred eEEeccCCChHHHHHHHHH--------HhhCCcceEEEccCCCC---chHHHhhCCCCCccceEE
Q 041305 6 VKVLGFSPSPFVMRARIAL--------KIKSVEYEFLEENLGSK---SELLLKSNPVHKKIPVLI 59 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L--------~~~gi~~~~~~~~~~~~---~~~~~~~~p~~g~vP~L~ 59 (225)
+..|+.++|++|+...-.+ .+.+ .+....+|.... ...+.+.... ..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGV-FGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEE
Confidence 5677889999999876332 2232 456666665432 2344444444 5789886
No 172
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=76.45 E-value=19 Score=24.23 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=36.9
Q ss_pred eEEeccCCChHHHHHHHHHHh-----hCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCeeeh
Q 041305 6 VKVLGFSPSPFVMRARIALKI-----KSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKPVC 66 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~-----~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l~ 66 (225)
+..++.++|+.|+.+.-.++. .++ ....+|... .+.+.+...- ..+|+++ .+|..+.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i--~f~~Vd~~~-~~~l~~~~~v-~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLET--KFIKVNAEK-APFLVEKLNI-KVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCC--EEEEEEccc-CHHHHHHCCC-ccCCEEEEEECCEEEE
Confidence 566777899999977766544 233 555666533 3445554454 5899997 6787655
No 173
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=76.29 E-value=20 Score=23.95 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=33.5
Q ss_pred CeEEeccCCChHHHHHHHHH-----HhhCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCee
Q 041305 5 DVKVLGFSPSPFVMRARIAL-----KIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKP 64 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L-----~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 64 (225)
-+..++.++|+.|+...-.+ ++.+..+....++... ...+.....- ..+|++. .+|..
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-~~~l~~~~~V-~~~Pt~~i~~~g~~ 91 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-ERRLARKLGA-HSVPAIVGIINGQV 91 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-cHHHHHHcCC-ccCCEEEEEECCEE
Confidence 35667889999998664332 3333344555556433 2334433344 5789887 56653
No 174
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=75.53 E-value=18 Score=24.89 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=21.1
Q ss_pred eEEeccCCChHHHHHHHHHH----hhCCcceEEEcc
Q 041305 6 VKVLGFSPSPFVMRARIALK----IKSVEYEFLEEN 37 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~----~~gi~~~~~~~~ 37 (225)
+..++.++||+|+.+.=.|. ..++++-.+.++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 66788999999998644443 344555555554
No 175
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=70.61 E-value=22 Score=21.85 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=33.2
Q ss_pred eEEeccCCChHHHHHHHHHHh-----hCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCe
Q 041305 6 VKVLGFSPSPFVMRARIALKI-----KSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDK 63 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~-----~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 63 (225)
+.+++.++|+.|+...-.+.. .++.+-.+ +... ...+...-.. ..+|++. .+|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i--~~~~-~~~~~~~~~v-~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKV--DVDE-NPELAEEYGV-RSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE--ECCC-ChhHHHhcCc-ccccEEEEEECCE
Confidence 677788899999988777766 45544444 4322 2334333333 4689886 4555
No 176
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=68.36 E-value=26 Score=26.70 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=33.2
Q ss_pred CeEEeccCCChHHHHHHHHHHhhC---CcceEEEccCCCCchHHHhhCCCCCccceEE
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKS---VEYEFLEENLGSKSELLLKSNPVHKKIPVLI 59 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~g---i~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~ 59 (225)
.+++|+.++||+|..+.-++...- -......+|.... ++......- ..+|+++
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~-~~~~~~~~V-~~vPtl~ 191 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN-PDLAEKYGV-MSVPKIV 191 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC-HHHHHHhCC-ccCCEEE
Confidence 467789999999998877766532 1233444565443 344433333 4799998
No 177
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=67.27 E-value=12 Score=33.13 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=36.8
Q ss_pred CeEEeccCCChHHHHHHH----HHHhh-CCcceEEEccCCCCchHHH-hhCCCCCccceEEeCCee
Q 041305 5 DVKVLGFSPSPFVMRARI----ALKIK-SVEYEFLEENLGSKSELLL-KSNPVHKKIPVLIHNDKP 64 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~----~L~~~-gi~~~~~~~~~~~~~~~~~-~~~p~~g~vP~L~~~g~~ 64 (225)
.+++|..+.||+|-.+.- +..+. +|..+.+.+. .. +++. +.+- ..||.++.||..
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~--~~-~~~~~~~~v--~~vP~~~i~~~~ 539 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVS--HF-PDLKDEYGI--MSVPAIVVDDQQ 539 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECc--cc-HHHHHhCCc--eecCEEEECCEE
Confidence 478999999999986544 44444 6777766654 33 3444 4444 479999977654
No 178
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=66.24 E-value=23 Score=23.86 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=31.1
Q ss_pred eEEe-ccCCChHHHHHHHHHHhhCC---cceEEEccCCCCchHHHhhCCCCCccceEE
Q 041305 6 VKVL-GFSPSPFVMRARIALKIKSV---EYEFLEENLGSKSELLLKSNPVHKKIPVLI 59 (225)
Q Consensus 6 ~~L~-~~~~s~~~~~v~~~L~~~gi---~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~ 59 (225)
++++ +-++||+|+.++-++....- ..+...++.+. .+++...-.- ..+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-~~~l~~~~~v-~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-DKEKAEKYGV-ERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-CHHHHHHcCC-CcCCEEE
Confidence 4455 55799999988766654321 13344455433 3455544444 5899997
No 179
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=65.12 E-value=46 Score=23.52 Aligned_cols=79 Identities=15% Similarity=0.042 Sum_probs=45.0
Q ss_pred CCCCCeEEeccCCChHHHHHHHHHHhhCCcceEEEccCC-CCchHHHhhCCCC--C-ccceEEeCCeeehhhHHHHHHHH
Q 041305 1 MAKSDVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG-SKSELLLKSNPVH--K-KIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 1 M~~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~~~~p~~--g-~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
|.++.+++++...|++|-.---+|.-+.-.-..+..++- +.....+...+.. . ..=.++.+|..+.+|.|+++-+.
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~ 84 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILR 84 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHH
Confidence 445678888888999998665555555433333333321 2222233222220 1 11222378999999999999776
Q ss_pred Hhh
Q 041305 77 EAW 79 (225)
Q Consensus 77 ~~~ 79 (225)
..-
T Consensus 85 ~L~ 87 (137)
T COG3011 85 LLP 87 (137)
T ss_pred HCC
Confidence 544
No 180
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=63.68 E-value=35 Score=21.67 Aligned_cols=57 Identities=12% Similarity=-0.004 Sum_probs=35.7
Q ss_pred eEEeccCCChHHHHHHHHHHhh----CCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCee
Q 041305 6 VKVLGFSPSPFVMRARIALKIK----SVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKP 64 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~----gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 64 (225)
+..++.++|+.|++..-.|... +..+....+|....+.-..+.+. ..+|++. .+|..
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i--~~~Pt~~~~~~g~~ 80 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI--TAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC--ccccEEEEEECCEE
Confidence 5667888999999886655532 33456666665443333334555 3689886 56654
No 181
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=62.68 E-value=38 Score=22.99 Aligned_cols=17 Identities=6% Similarity=0.200 Sum_probs=13.7
Q ss_pred CeEEeccCCChHHHHHH
Q 041305 5 DVKVLGFSPSPFVMRAR 21 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~ 21 (225)
.+..++.++|++|++..
T Consensus 17 vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 17 LLLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEEeCCCCHHHHHHH
Confidence 45677888999999875
No 182
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=60.98 E-value=37 Score=20.98 Aligned_cols=38 Identities=13% Similarity=0.431 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHhhh
Q 041305 67 ESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDE 106 (225)
Q Consensus 67 ~S~~I~~yL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~ 106 (225)
|..-|+.++..-||+-...+.+++ .+..++.|...+.+
T Consensus 5 E~~~ll~~I~~aYP~~~~~f~~~~--~k~~v~~W~~~L~d 42 (71)
T PF11417_consen 5 ETAKLLKLIKAAYPQWAGNFKPTD--SKETVDLWYDMLKD 42 (71)
T ss_dssp HHHHHHHHHHHHST---TT---ST--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCcchhccchhh--HHHHHHHHHHHHHh
Confidence 567788888888883112344443 34578888877766
No 183
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=59.55 E-value=6.9 Score=30.09 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHhcccccc
Q 041305 132 IEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVK 205 (225)
Q Consensus 132 ~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 205 (225)
.+.+..++..|. +.+|.-|.+++-+|+.+|..+..-.. ...+++..+|+..+.+.-.+.
T Consensus 10 ~~glk~l~~sLA----~ks~~~g~~~s~edv~vf~al~~ep~-----------s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLA----EKSYIEGYQLSKEDVVVFAALGVEPQ-----------SARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhh----cccCCCCCCcccccceeehhcccCcc-----------hhhhhHHHHHHHHHHHHHHHH
Confidence 456778888889 78999999999999999877642111 144667777877776654443
No 184
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=58.35 E-value=63 Score=23.24 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=35.2
Q ss_pred eEEeccCCChHHHHHHHHHHh-----hCCcceEEEccCCCCchHHH-hhCCCC----CccceEE--eCCeeeh
Q 041305 6 VKVLGFSPSPFVMRARIALKI-----KSVEYEFLEENLGSKSELLL-KSNPVH----KKIPVLI--HNDKPVC 66 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~-----~gi~~~~~~~~~~~~~~~~~-~~~p~~----g~vP~L~--~~g~~l~ 66 (225)
+..|+.++|+.|+...-.++. .+-.++...+|.+.. ++.. +.+-.. +++|++. .+|+.+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 677888899999977544332 223356666776443 3333 223320 2389987 6776654
No 185
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=57.70 E-value=8.5 Score=33.68 Aligned_cols=72 Identities=8% Similarity=0.041 Sum_probs=42.0
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCC---cceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhh----HHHHHHHHH
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSV---EYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCES----LIIVEYVDE 77 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi---~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S----~~I~~yL~~ 77 (225)
.+++|..+.||||-.+.-++...-+ ..+...++-...++ +...-.. ..||.+..+|..+.+. ..+++.+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~-~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQD-EVEALGI-QGVPAVFLNGEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH-HHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhh
Confidence 4789999999999977665544322 23333344333433 3433343 5899999766554442 344455544
Q ss_pred h
Q 041305 78 A 78 (225)
Q Consensus 78 ~ 78 (225)
.
T Consensus 198 ~ 198 (515)
T TIGR03140 198 T 198 (515)
T ss_pred c
Confidence 3
No 186
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.25 E-value=23 Score=28.16 Aligned_cols=69 Identities=14% Similarity=0.055 Sum_probs=49.0
Q ss_pred CCeEEeccCCCh------HHHHHHHHHHhhCCcceEEEccCC-CCchHHH---hh-CCCCCccceEEeCCeeehhhHHHH
Q 041305 4 SDVKVLGFSPSP------FVMRARIALKIKSVEYEFLEENLG-SKSELLL---KS-NPVHKKIPVLIHNDKPVCESLIIV 72 (225)
Q Consensus 4 ~~~~L~~~~~s~------~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~---~~-~p~~g~vP~L~~~g~~l~~S~~I~ 72 (225)
+++++|.....+ -|..||.+|+-.++.|+++.++++ ....++. +. .-. ..+|.+-.+|..|-+...|.
T Consensus 131 ~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~-~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 131 DRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKA-VSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred ceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhccccc-CccCeEEEccEEeccHHHhh
Confidence 357777665332 477999999999999999999987 2334432 22 223 57897778898888877776
Q ss_pred H
Q 041305 73 E 73 (225)
Q Consensus 73 ~ 73 (225)
+
T Consensus 210 ~ 210 (281)
T KOG2824|consen 210 R 210 (281)
T ss_pred h
Confidence 5
No 187
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=56.15 E-value=42 Score=22.72 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHhhhHhhhhhhhhccc---CCHHHHHHHHHHHHHHHHHHHHHhhhc
Q 041305 69 LIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSA---NGAEAKKAAIEQLIEVLVLLEDAFVKC 145 (225)
Q Consensus 69 ~~I~~yL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~le~~L~~~ 145 (225)
.+.++||.++.+ ++-.+.........+.+.+++.+...+...+.. -..+.+..+.+.....+..||+.|+.
T Consensus 9 ~~LI~yLte~L~-----lFe~~~~~~~~~~Tv~d~vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~- 82 (113)
T PF12290_consen 9 DALIEYLTENLS-----LFESSQSGDTGDETVEDVVEEQIASQIMAVCEQNPELEFSQRFQIIREADAIVYDLEEVLAS- 82 (113)
T ss_pred HHHHHHHHHhHH-----HhcCCCCCCcccchHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 578899998876 332111111112223333333332222222221 24566677888899999999999983
Q ss_pred cCCCccccCCCCChhHHHHH
Q 041305 146 SKGKAFFGGNQIGFLDIAFG 165 (225)
Q Consensus 146 ~~~~~~l~G~~~t~AD~~l~ 165 (225)
=| +..+|-.-+.+.
T Consensus 83 ----V~--~~~aT~eQ~~Fi 96 (113)
T PF12290_consen 83 ----VW--NQKATNEQIAFI 96 (113)
T ss_pred ----HH--cCCCCHHHHHHH
Confidence 33 356666655554
No 188
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=56.01 E-value=10 Score=33.17 Aligned_cols=72 Identities=8% Similarity=-0.001 Sum_probs=42.2
Q ss_pred CeEEeccCCChHHHHHHHHHHhhC---CcceEEEccCCCCchHHHhhCCCCCccceEEeCCeeehhh----HHHHHHHHH
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKS---VEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCES----LIIVEYVDE 77 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~g---i~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~~S----~~I~~yL~~ 77 (225)
.+++|..+.||||-.+.-++...- -..+...++.... +++...-.- ..||.+..+|..+.+- ..+++.+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~-~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALF-QDEVEARNI-MAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhC-HhHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 488999999999997655544332 2233444443333 344443343 5899999766554442 355555554
Q ss_pred h
Q 041305 78 A 78 (225)
Q Consensus 78 ~ 78 (225)
.
T Consensus 197 ~ 197 (517)
T PRK15317 197 G 197 (517)
T ss_pred c
Confidence 3
No 189
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=55.30 E-value=50 Score=20.68 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=16.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHhhhHhhh
Q 041305 70 IIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFS 110 (225)
Q Consensus 70 ~I~~yL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~ 110 (225)
-|-+||.+... .-.....+..+++|+.+.+-+
T Consensus 17 ~i~dYL~~E~~---------~evg~~~Ae~fleFis~elGp 48 (82)
T COG5460 17 RIRDYLTRETE---------TEVGKFDAEFFLEFISGELGP 48 (82)
T ss_pred HHHHHHHHHHH---------HHHHHhhHHHHHHHHHhhhhH
Confidence 35566666554 222333445566666665444
No 190
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=55.29 E-value=24 Score=25.93 Aligned_cols=35 Identities=20% Similarity=0.060 Sum_probs=26.0
Q ss_pred CeEEeccCCChHHHHH----HHHHHhh-CCcceEEEccCC
Q 041305 5 DVKVLGFSPSPFVMRA----RIALKIK-SVEYEFLEENLG 39 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v----~~~L~~~-gi~~~~~~~~~~ 39 (225)
++++|+...||||... +-+++.. ++.++.+.+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 3789999999999844 4455555 788888877653
No 191
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.90 E-value=59 Score=22.46 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=41.0
Q ss_pred ccCCChHHHHH----HHHHHhhCCcceEEEccCCCCchHHHhhCCC-----C-CccceEE--e-CCeeehhhHHHHHHHH
Q 041305 10 GFSPSPFVMRA----RIALKIKSVEYEFLEENLGSKSELLLKSNPV-----H-KKIPVLI--H-NDKPVCESLIIVEYVD 76 (225)
Q Consensus 10 ~~~~s~~~~~v----~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~-----~-g~vP~L~--~-~g~~l~~S~~I~~yL~ 76 (225)
+-++||.|.++ .=+|++..-.+..+.++....+.|--..||+ . --||+|. . .+..+.+.+.-...|.
T Consensus 41 GqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lv 120 (128)
T KOG3425|consen 41 GQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLV 120 (128)
T ss_pred CCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHH
Confidence 34589999865 4555655666666666554443332222332 1 2488887 3 3456777777777776
Q ss_pred Hhh
Q 041305 77 EAW 79 (225)
Q Consensus 77 ~~~ 79 (225)
+..
T Consensus 121 e~~ 123 (128)
T KOG3425|consen 121 EML 123 (128)
T ss_pred HHh
Confidence 543
No 192
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=54.65 E-value=30 Score=21.47 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=35.7
Q ss_pred CeEEeccCCChHHHHH-----HHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEE
Q 041305 5 DVKVLGFSPSPFVMRA-----RIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI 59 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v-----~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~ 59 (225)
.+.||....+|.|++. ++.-++.+-+|+...+|... .++......- --+|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~-~P~lAe~~~i-vAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK-QPQLAEEDKI-VATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc-CHhHHhhCCE-EEechhh
Confidence 3688888888888865 34444457789999999754 4555555554 4677776
No 193
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.34 E-value=1.1e+02 Score=24.78 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=49.1
Q ss_pred CCeEEeccCCChHHHHHHHHH----HhhCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCeeehh------hHHH
Q 041305 4 SDVKVLGFSPSPFVMRARIAL----KIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKPVCE------SLII 71 (225)
Q Consensus 4 ~~~~L~~~~~s~~~~~v~~~L----~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l~~------S~~I 71 (225)
+-+.+++.|+|+-|.-..=.| +.++=.|....+|.+. .+.+.+...- ..||++. .+|..+.+ -..|
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~-~p~vAaqfgi-qsIPtV~af~dGqpVdgF~G~qPesql 122 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA-EPMVAAQFGV-QSIPTVYAFKDGQPVDGFQGAQPESQL 122 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc-chhHHHHhCc-CcCCeEEEeeCCcCccccCCCCcHHHH
Confidence 446788889999998553333 3344467777777643 4455544433 5899987 56655433 3578
Q ss_pred HHHHHHhhC
Q 041305 72 VEYVDEAWS 80 (225)
Q Consensus 72 ~~yL~~~~~ 80 (225)
-++|++..+
T Consensus 123 r~~ld~~~~ 131 (304)
T COG3118 123 RQFLDKVLP 131 (304)
T ss_pred HHHHHHhcC
Confidence 899998887
No 194
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=53.85 E-value=58 Score=21.00 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=32.5
Q ss_pred eEEeccCCChHHHHHHHHHHh-----hCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCe
Q 041305 6 VKVLGFSPSPFVMRARIALKI-----KSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDK 63 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~-----~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 63 (225)
+..++.++|+.|+...-.+.. .|. +....+|.... +.+.+...- ..+|++. .+|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~~-~~~~~~~~v-~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGDD-RMLCRSQGV-NSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCcc-HHHHHHcCC-CccCEEEEEcCCC
Confidence 567788999999976544432 232 45556665433 344333333 5789886 4554
No 195
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=52.21 E-value=55 Score=21.79 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=38.5
Q ss_pred EeccCCChHHHHHHHHHHhhCCcceEEEccCC-CCchHHH---hh---CCCCCccceEEeCCe-eehhhHHHHHHHH
Q 041305 8 VLGFSPSPFVMRARIALKIKSVEYEFLEENLG-SKSELLL---KS---NPVHKKIPVLIHNDK-PVCESLIIVEYVD 76 (225)
Q Consensus 8 L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~---~~---~p~~g~vP~L~~~g~-~l~~S~~I~~yL~ 76 (225)
|+|...||+|.+..-.+.-....-....++.- ....+.. .. +.. ..+-+ ..+|. .+.++.|+.+-+.
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDAD-SRLHL-IDDGERVYRGSDAVLRLLR 75 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHc-CeeEE-ecCCCEEEEcHHHHHHHHH
Confidence 46677899999888777777543333333331 1111111 12 222 23333 55665 9999999988654
No 196
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=51.52 E-value=66 Score=20.95 Aligned_cols=56 Identities=14% Similarity=-0.075 Sum_probs=31.5
Q ss_pred eEEeccCCChHHHHHHHHHHh----hC-CcceEEEccCCCCchHHHhhCCCCCccceEE--eCCee
Q 041305 6 VKVLGFSPSPFVMRARIALKI----KS-VEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKP 64 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~----~g-i~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 64 (225)
+..++.++|+.|+...-.+.. .+ -.+....++.+ .++..+..-- ..+|++. .+|..
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v-~~~Pt~~~~~~g~~ 83 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRG-KCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCC-CcCcEEEEEECCEE
Confidence 566788899999977544432 12 12344455543 2334433333 4789876 56654
No 197
>PRK09381 trxA thioredoxin; Provisional
Probab=50.70 E-value=69 Score=20.95 Aligned_cols=58 Identities=10% Similarity=-0.033 Sum_probs=33.5
Q ss_pred eEEeccCCChHHHHHHHHHH----hhCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCeee
Q 041305 6 VKVLGFSPSPFVMRARIALK----IKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKPV 65 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~----~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l 65 (225)
+..++.++||.|+...-.++ ..+-.+....++.... +.+.+.-.. ..+|+++ .+|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~-~~~~~~~~v-~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-PGTAPKYGI-RGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC-hhHHHhCCC-CcCCEEEEEeCCeEE
Confidence 55677889999997753332 2222355566665433 333333333 5799886 566543
No 198
>PHA02278 thioredoxin-like protein
Probab=50.44 E-value=72 Score=21.12 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=32.5
Q ss_pred eEEeccCCChHHHHHHHHHHhh----CCcceEEEccCCCC---chHHHhhCCCCCccceEE--eCCeee
Q 041305 6 VKVLGFSPSPFVMRARIALKIK----SVEYEFLEENLGSK---SELLLKSNPVHKKIPVLI--HNDKPV 65 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~----gi~~~~~~~~~~~~---~~~~~~~~p~~g~vP~L~--~~g~~l 65 (225)
+.-++-++|+.|+...=.++.. ........++.+.. .+++...--- ..+|++. .+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I-~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI-MSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC-ccccEEEEEECCEEE
Confidence 4556778999999766443322 22223444454332 2344433333 4789997 577654
No 199
>PRK10996 thioredoxin 2; Provisional
Probab=49.30 E-value=89 Score=21.84 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=34.4
Q ss_pred eEEeccCCChHHHHHHHHHHh----hCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCeee
Q 041305 6 VKVLGFSPSPFVMRARIALKI----KSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKPV 65 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l 65 (225)
+..++.++|+.|+...-.+.. .+-.+....+|.... +.+.+..-- ..+|++. .+|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-~~l~~~~~V-~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-RELSARFRI-RSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-HHHHHhcCC-CccCEEEEEECCEEE
Confidence 567788899999976443332 232355566665443 344433333 4789987 566643
No 200
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=49.14 E-value=29 Score=26.19 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=24.3
Q ss_pred CCeEEeccCCChHHHHH----HHHHHhhCCcceEEEccC
Q 041305 4 SDVKVLGFSPSPFVMRA----RIALKIKSVEYEFLEENL 38 (225)
Q Consensus 4 ~~~~L~~~~~s~~~~~v----~~~L~~~gi~~~~~~~~~ 38 (225)
++|.+|+...||||... +-++...++.++.+.+.+
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 36889999999999854 444455666666666543
No 201
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=48.98 E-value=33 Score=23.60 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=29.5
Q ss_pred ccCCChHHHHHHHHHH----hhCCcceEEEccCCCCch------HHHhhCC---CCCccceEE--eCCeeehhhHHHHHH
Q 041305 10 GFSPSPFVMRARIALK----IKSVEYEFLEENLGSKSE------LLLKSNP---VHKKIPVLI--HNDKPVCESLIIVEY 74 (225)
Q Consensus 10 ~~~~s~~~~~v~~~L~----~~gi~~~~~~~~~~~~~~------~~~~~~p---~~g~vP~L~--~~g~~l~~S~~I~~y 74 (225)
+.++||.|.++.-.++ ...-....+.+.....+. .|++ +| . ..||+|+ .++..|.|....-.-
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~-~p~~~l-~~IPTLi~~~~~~rL~e~e~~~~~ 111 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT-DPDLKL-KGIPTLIRWETGERLVEEECLNED 111 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH---CC----SSSEEEECTSS-EEEHHHHH-HH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE-cceeee-eecceEEEECCCCccchhhhccHH
Confidence 4459999998764443 322223444333332221 2222 22 2 3599998 455667776654443
Q ss_pred H
Q 041305 75 V 75 (225)
Q Consensus 75 L 75 (225)
|
T Consensus 112 l 112 (119)
T PF06110_consen 112 L 112 (119)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>PRK09266 hypothetical protein; Provisional
Probab=48.50 E-value=36 Score=26.85 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=40.1
Q ss_pred HHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhhC
Q 041305 23 ALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWS 80 (225)
Q Consensus 23 ~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~~ 80 (225)
.+...|+++++..+++. ..++.|.-.+-. |-+||-..|+..+.+...|.+.|.+.|.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~-gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWR-GQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCcc-ceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 44556899999988754 334445555566 8999998777777655678888877664
No 203
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=48.07 E-value=81 Score=23.94 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=33.5
Q ss_pred CeEEecc---CCChHHHHHHHHHHhh-----CCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCe
Q 041305 5 DVKVLGF---SPSPFVMRARIALKIK-----SVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDK 63 (225)
Q Consensus 5 ~~~L~~~---~~s~~~~~v~~~L~~~-----gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 63 (225)
.+.+|.. ++||.|+.+.=+++.. ++.+..+.+|.. ..+.+....-- ..+|++. .+|.
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~-~~~~l~~~~~V-~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP-EDKEEAEKYGV-ERVPTTIILEEGK 88 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc-ccHHHHHHcCC-CccCEEEEEeCCe
Confidence 4667777 8999999776666443 233334444432 33444443344 5789997 4554
No 204
>PHA03075 glutaredoxin-like protein; Provisional
Probab=47.45 E-value=43 Score=22.91 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=49.0
Q ss_pred CCeEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEEeC-CeeehhhHHHHHHHHHhhC
Q 041305 4 SDVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHN-DKPVCESLIIVEYVDEAWS 80 (225)
Q Consensus 4 ~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~~~-g~~l~~S~~I~~yL~~~~~ 80 (225)
..+.|+|-|.|+-|+.+.-+|....=.|+...++.-.. .+-. |++=+|..+ +..+. +.+.+||...+-
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSf------FsK~-g~v~~lg~d~~y~lI--nn~~~~lgne~v 71 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVNILSF------FSKD-GQVKVLGMDKGYTLI--NNFFKHLGNEYV 71 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeee------eccC-CceEEEecccceehH--HHHHHhhcccEE
Confidence 46899999999999999999988888999999985421 0122 777777743 33332 457777776554
No 205
>PTZ00051 thioredoxin; Provisional
Probab=46.82 E-value=74 Score=20.20 Aligned_cols=57 Identities=7% Similarity=0.001 Sum_probs=32.8
Q ss_pred eEEeccCCChHHHHHHHHHHhh---CCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCee
Q 041305 6 VKVLGFSPSPFVMRARIALKIK---SVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKP 64 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~---gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 64 (225)
+..++.++|+.|+...-.++.. ...+....++... ...+.+.-.. ..+|+++ .+|..
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-LSEVAEKENI-TSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-hHHHHHHCCC-ceeeEEEEEeCCeE
Confidence 5677888999999775554432 1223444555432 2334443343 5789886 45643
No 206
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=46.02 E-value=85 Score=20.67 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=31.4
Q ss_pred CeEEeccCCChHHHHHHHHHH-----hhCCcceEEEccCCCCchHHH-hhCCCCCccceEE
Q 041305 5 DVKVLGFSPSPFVMRARIALK-----IKSVEYEFLEENLGSKSELLL-KSNPVHKKIPVLI 59 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~-----~~gi~~~~~~~~~~~~~~~~~-~~~p~~g~vP~L~ 59 (225)
-+..++.++||.|+...-.+. +.+..+....++.+.....+. +.... ..+|++.
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEE
Confidence 467788999999997654332 233345555556543222332 22344 5789886
No 207
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=44.72 E-value=79 Score=19.91 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=31.9
Q ss_pred eEEeccCCChHHHHHHHHHHh----hCCcceEEEccCCCCchHHH-hhCCCCCccceEE--eCCe
Q 041305 6 VKVLGFSPSPFVMRARIALKI----KSVEYEFLEENLGSKSELLL-KSNPVHKKIPVLI--HNDK 63 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~-~~~p~~g~vP~L~--~~g~ 63 (225)
+..++.++|+.|+...-.+.. .+-.+....+|.... ..+. +.+- ..+|++. .+|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v--~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN-PDIAAKYGI--RSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC-HHHHHHcCC--CcCCEEEEEeCCc
Confidence 456677899999977544433 222355566665433 3333 3344 4789886 4554
No 208
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=42.98 E-value=22 Score=24.00 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=21.8
Q ss_pred cceEE-eCCeeehhhHHHHHHHHHhhC
Q 041305 55 IPVLI-HNDKPVCESLIIVEYVDEAWS 80 (225)
Q Consensus 55 vP~L~-~~g~~l~~S~~I~~yL~~~~~ 80 (225)
+|.+. .+|.+++.|..|+++..+.+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 46565 799999999999999988775
No 209
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=42.58 E-value=82 Score=20.95 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=33.4
Q ss_pred eEEeccCCChHHHHHHHHHHh-----hCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCeeehh
Q 041305 6 VKVLGFSPSPFVMRARIALKI-----KSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKPVCE 67 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~-----~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l~~ 67 (225)
+..++.++|+.|+.+.=.++. .++ ....+|.... .+.+.--- ..+|+++ .+|..+..
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v--~f~~vd~~~~--~l~~~~~i-~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPET--KFVKINAEKA--FLVNYLDI-KVLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCc--EEEEEEchhh--HHHHhcCC-CcCCEEEEEECCEEEEE
Confidence 456788899999977544432 233 3445554332 44433333 4789997 57765443
No 210
>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB, or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This C-terminal domain has an all alpha helical fold [].; PDB: 2VC9_A 2VCC_A 2VCB_A 2VCA_A 4A4A_A.
Probab=42.00 E-value=94 Score=24.72 Aligned_cols=69 Identities=19% Similarity=0.132 Sum_probs=42.3
Q ss_pred HHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccC----------CCCChhHHHHHhh
Q 041305 98 RFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGG----------NQIGFLDIAFGSY 167 (225)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G----------~~~t~AD~~l~~~ 167 (225)
++.++-....+...+...+..++.+..+..-.++.+.|..+|.+|+. +..|++| ....-.|.+-+.+
T Consensus 99 RQvL~n~~~~~~~~~~~ay~~~d~~~~~~~~~~~l~ll~dlD~lL~t---~~~f~Lg~Wi~~Ar~~g~~~~e~~~yE~NA 175 (267)
T PF12972_consen 99 RQVLSNYADELYQQLVDAYNSKDIEAFKALSARFLELLDDLDRLLAT---NPEFLLGKWIEDARAWGTTPEEKDLYEYNA 175 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHTT----GGGBHHHHHHHHHHSSTT--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHCc---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444333344455555555667777788889999999999999995 3455554 4555566665544
Q ss_pred Hh
Q 041305 168 LG 169 (225)
Q Consensus 168 l~ 169 (225)
-.
T Consensus 176 R~ 177 (267)
T PF12972_consen 176 RN 177 (267)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 211
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=41.26 E-value=92 Score=19.68 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=33.9
Q ss_pred eEEeccCCChHHHHHHHHHHhh----CCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCee
Q 041305 6 VKVLGFSPSPFVMRARIALKIK----SVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKP 64 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~----gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 64 (225)
+..++.++|+.|+...-.+... +-.+....+|... ...+.+.-.. ..+|+++ .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA-QPQIAQQFGV-QALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC-CHHHHHHcCC-CCCCEEEEEeCCEE
Confidence 5666778999999775555432 2234555666543 3444433333 4789997 66654
No 212
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=39.20 E-value=92 Score=22.62 Aligned_cols=36 Identities=22% Similarity=0.069 Sum_probs=23.1
Q ss_pred CCeEEeccC--CChHHH-------HHHHHHHhhCCcceEEEccCC
Q 041305 4 SDVKVLGFS--PSPFVM-------RARIALKIKSVEYEFLEENLG 39 (225)
Q Consensus 4 ~~~~L~~~~--~s~~~~-------~v~~~L~~~gi~~~~~~~~~~ 39 (225)
++++..||+ +||-|+ ...-.+...+-+++++.|+.+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 455444444 777776 334445556778999999876
No 213
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=38.41 E-value=2e+02 Score=22.71 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 041305 67 ESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKC- 145 (225)
Q Consensus 67 ~S~~I~~yL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~- 145 (225)
|-..|-..+.|+... ..-|+|++..+.|...+..-=+..+..+...+ ..+.+++++..-+..||..|...
T Consensus 5 E~qLI~~lf~RL~~a---e~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vl------vQE~AL~~a~~ri~eLe~ql~q~~ 75 (247)
T PF09849_consen 5 ERQLIDDLFSRLKQA---EAQPRDPEAEALIAQALARQPDAPYYLAQTVL------VQEQALKQAQARIQELEAQLQQAQ 75 (247)
T ss_pred HHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHHHhCCchHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666666666652 23388888777777666544443333333322 35777888999999999998331
Q ss_pred ----cCCCccccC
Q 041305 146 ----SKGKAFFGG 154 (225)
Q Consensus 146 ----~~~~~~l~G 154 (225)
..++.||.|
T Consensus 76 ~~~~~~~ggFL~~ 88 (247)
T PF09849_consen 76 APQAQSSGGFLSG 88 (247)
T ss_pred cccCCCCCcchhh
Confidence 125667653
No 214
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.15 E-value=38 Score=21.23 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHHhhCCcceEEEcc
Q 041305 13 PSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 13 ~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
--+|.+|+.-.|+..|++|+..+-+
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecCC
Confidence 4579999999999999999988644
No 215
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=36.99 E-value=22 Score=25.87 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHhhC
Q 041305 67 ESLIIVEYVDEAWS 80 (225)
Q Consensus 67 ~S~~I~~yL~~~~~ 80 (225)
|-.+|++||++.+|
T Consensus 55 er~avVkYLAd~~G 68 (167)
T PF09098_consen 55 ERRAVVKYLADTQG 68 (167)
T ss_dssp HHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHccC
Confidence 45899999999998
No 216
>PTZ00102 disulphide isomerase; Provisional
Probab=36.95 E-value=2.5e+02 Score=24.09 Aligned_cols=72 Identities=13% Similarity=0.035 Sum_probs=43.2
Q ss_pred eEEeccCCChHHHHHHHHH-------HhhCCcceEEEccCCCCchHHH-hhCCCCCccceEE--eCCee--e---hhhHH
Q 041305 6 VKVLGFSPSPFVMRARIAL-------KIKSVEYEFLEENLGSKSELLL-KSNPVHKKIPVLI--HNDKP--V---CESLI 70 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L-------~~~gi~~~~~~~~~~~~~~~~~-~~~p~~g~vP~L~--~~g~~--l---~~S~~ 70 (225)
+..++.++|+.|++..=.+ ...+-++....+|.... ..+. +.+- ..+|++. .+|.. + .....
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-~~l~~~~~i--~~~Pt~~~~~~g~~~~y~g~~~~~~ 129 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-MELAQEFGV--RGYPTIKFFNKGNPVNYSGGRTADG 129 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-HHHHHhcCC--CcccEEEEEECCceEEecCCCCHHH
Confidence 5778889999999764211 12233455566664332 3333 3343 4689886 44432 2 35678
Q ss_pred HHHHHHHhhC
Q 041305 71 IVEYVDEAWS 80 (225)
Q Consensus 71 I~~yL~~~~~ 80 (225)
|.+|+.+..+
T Consensus 130 l~~~l~~~~~ 139 (477)
T PTZ00102 130 IVSWIKKLTG 139 (477)
T ss_pred HHHHHHHhhC
Confidence 9999988766
No 217
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=36.92 E-value=1.4e+02 Score=20.57 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=35.9
Q ss_pred EEeccCCChHHHHHHH-------HHHhhCCcceEEEccCCCCchHHHh--------hCCCCCccceEE---eCCeeehhh
Q 041305 7 KVLGFSPSPFVMRARI-------ALKIKSVEYEFLEENLGSKSELLLK--------SNPVHKKIPVLI---HNDKPVCES 68 (225)
Q Consensus 7 ~L~~~~~s~~~~~v~~-------~L~~~gi~~~~~~~~~~~~~~~~~~--------~~p~~g~vP~L~---~~g~~l~~S 68 (225)
..++..+|++|++..- +....+-.|..+.+|.... ++..+ ..-. +.+|+++ .+|..+..+
T Consensus 20 l~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~-~~~~~~~~~~~~~~~~~-~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 20 LSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER-PDVDKIYMNAAQAMTGQ-GGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC-cHHHHHHHHHHHHhcCC-CCCCEEEEECCCCCEEeee
Confidence 4457779999997742 2222334677888886543 22211 1223 4689887 468888766
No 218
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=35.15 E-value=1.4e+02 Score=20.12 Aligned_cols=60 Identities=7% Similarity=-0.060 Sum_probs=31.9
Q ss_pred eEEeccCCChHHHHHHHHHHh------hCCcceEEEccCCCCchHHHhhCCCCCccceEE--e-CCeeeh
Q 041305 6 VKVLGFSPSPFVMRARIALKI------KSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--H-NDKPVC 66 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~------~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~-~g~~l~ 66 (225)
+..++-++|+.|+...-.+.. .+..|..+.++-.. .+.....+..+|.+|+++ + +|..+.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCCch
Confidence 455677899999987544443 12234444444221 121234455412499987 3 566544
No 219
>PRK14530 adenylate kinase; Provisional
Probab=34.74 E-value=56 Score=24.73 Aligned_cols=32 Identities=16% Similarity=0.053 Sum_probs=28.1
Q ss_pred CCCCCeEEeccCCChHHHHHHHHHHhhCCcce
Q 041305 1 MAKSDVKVLGFSPSPFVMRARIALKIKSVEYE 32 (225)
Q Consensus 1 M~~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~ 32 (225)
|..+++.+.|.|+|+-+-..+.+.+..|++|-
T Consensus 1 ~~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 1 MSQPRILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 66678999999999999999999999998754
No 220
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=34.16 E-value=48 Score=21.74 Aligned_cols=21 Identities=19% Similarity=0.081 Sum_probs=13.9
Q ss_pred CeEEeccCCChHHHHHHHHHH
Q 041305 5 DVKVLGFSPSPFVMRARIALK 25 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~ 25 (225)
.+.+++.++||+|++..-.+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 356778899999998855544
No 221
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=33.51 E-value=55 Score=17.51 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=19.7
Q ss_pred CccceEEeCCeeehhhHHHHHHHH
Q 041305 53 KKIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 53 g~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
|.+|....++..++....|.+|+.
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 25 GELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred CCCCeEEeCCeEEEeHHHHHHHHh
Confidence 678887777888888888888875
No 222
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=33.43 E-value=2.9e+02 Score=23.40 Aligned_cols=73 Identities=12% Similarity=0.055 Sum_probs=43.4
Q ss_pred eEEeccCCChHHHHHHHHH-----Hhh--CCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCee-------ehhhH
Q 041305 6 VKVLGFSPSPFVMRARIAL-----KIK--SVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKP-------VCESL 69 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L-----~~~--gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~-------l~~S~ 69 (225)
+.+++.++|+.|+...-.+ .+. +-.+....++.... .++.+.-.- ..+|++. .+|.. -.+..
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~~g~~~~~ 99 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLAQKYGV-SGYPTLKIFRNGEDSVSDYNGPRDAD 99 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHHHhCCC-ccccEEEEEeCCccceeEecCCCCHH
Confidence 5778889999999764222 222 32355566665433 344333333 4688886 44442 23567
Q ss_pred HHHHHHHHhhC
Q 041305 70 IIVEYVDEAWS 80 (225)
Q Consensus 70 ~I~~yL~~~~~ 80 (225)
.|.+++.+..+
T Consensus 100 ~l~~~i~~~~~ 110 (462)
T TIGR01130 100 GIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHhcC
Confidence 88999988775
No 223
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=32.76 E-value=76 Score=22.57 Aligned_cols=73 Identities=12% Similarity=-0.027 Sum_probs=45.4
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEEEccCC-CCchHHHhhCC-CCCccceEEeCCeeehh---hHHHHHHHHHhh
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFLEENLG-SKSELLLKSNP-VHKKIPVLIHNDKPVCE---SLIIVEYVDEAW 79 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~-~~~~~~~~~~p-~~g~vP~L~~~g~~l~~---S~~I~~yL~~~~ 79 (225)
.++.|+.|.|+.|..=.=.|+.+|..+..+..+-. ..... +.+-+ + ...=+.+.+|..+-+ -.+|.+.|++..
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~-~gIp~e~-~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRR-LGIPYEM-QSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHh-cCCChhh-ccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 68999999999998877788888887777765421 00000 01100 1 122344556765544 378888888766
No 224
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=32.69 E-value=1.4e+02 Score=20.19 Aligned_cols=55 Identities=11% Similarity=-0.056 Sum_probs=31.9
Q ss_pred eEEeccCCChHHHHHHHHHHhhCC----cceEEEccCCCCchHHH--hhCCCCCccceEE--eCCe
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSV----EYEFLEENLGSKSELLL--KSNPVHKKIPVLI--HNDK 63 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi----~~~~~~~~~~~~~~~~~--~~~p~~g~vP~L~--~~g~ 63 (225)
+..++-++|+.|+...-.++...- ......+|.+.. .... +.+- ..+|++. .+|.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~-~~l~~~~~~I--~~~PTl~lf~~g~ 95 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP-QGKCRKQKHF--FYFPVIHLYYRSR 95 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC-hHHHHHhcCC--cccCEEEEEECCc
Confidence 567788999999987655554321 244455665432 3333 2333 4689886 4543
No 225
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=32.27 E-value=81 Score=19.97 Aligned_cols=53 Identities=8% Similarity=-0.039 Sum_probs=29.7
Q ss_pred CeEEeccCCChHHHHHHHHH-----HhhCC-cceEEEccCCCCchHHHhhCCCCCccceEE
Q 041305 5 DVKVLGFSPSPFVMRARIAL-----KIKSV-EYEFLEENLGSKSELLLKSNPVHKKIPVLI 59 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L-----~~~gi-~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~ 59 (225)
.+.+|+.++|+.|+...-.+ .+.+- .+....++. .....+.+.-.. ..+|.+.
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~i-~~~P~~~ 74 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA-TAEKDLASRFGV-SGFPTIK 74 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc-cchHHHHHhCCC-CcCCEEE
Confidence 36788899999999753333 22222 244444453 233444433334 4789885
No 226
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.98 E-value=3.1e+02 Score=24.18 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=34.4
Q ss_pred HHHHHHhhhHhhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccCC
Q 041305 98 RFWAAYVDEKWFSALRDIGSANGAEAKKAAIEQLIEVLVLLEDAFVKCSKGKAFFGGN 155 (225)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~~l~G~ 155 (225)
++.++...+....-++..+..++......+-..+.+.+..+|..|+. ++.||+|.
T Consensus 495 Rq~lqelanq~y~e~~sAflkkd~~sl~~~~~~llelf~dle~~las---d~nfLlg~ 549 (666)
T KOG2233|consen 495 RQMLQELANQAYLEARSAFLKKDKQSLGALSEKLLELFQDLESYLAS---DDNFLLGQ 549 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CcchhHHH
Confidence 44454444444444444444444555556668888899999999885 56677763
No 227
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=31.45 E-value=1.6e+02 Score=23.95 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhH
Q 041305 130 QLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVT 174 (225)
Q Consensus 130 ~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~ 174 (225)
.+.+++..||.+-.+. ...--.|.++|+||+.+..-...++..
T Consensus 73 ~L~~~~~~Le~ik~~~--~~~~~~~~~vS~ADLivLaG~vAiE~a 115 (297)
T cd08200 73 ELAKVLAVLEGIQKEF--NESQSGGKKVSLADLIVLGGCAAVEKA 115 (297)
T ss_pred HHHHHHHHHHHHHHHh--cccccCCccccHHHHHHHHhHHHHHHH
Confidence 4777777777776643 111223557999999987766666554
No 228
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=31.10 E-value=2.2e+02 Score=20.95 Aligned_cols=59 Identities=10% Similarity=0.020 Sum_probs=33.0
Q ss_pred eEEeccCCChHHHHHHHHHH---hhCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCeeehh
Q 041305 6 VKVLGFSPSPFVMRARIALK---IKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKPVCE 67 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~---~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l~~ 67 (225)
+..++.++|+.|+.+.-.|. ..--.+..+.|+.... .+....+- ..+|++. .+|..+..
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v-~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDT-DALPALLVYKGGELIGN 150 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCC-CCCCEEEEEECCEEEEE
Confidence 44567789999986643221 1111244555554332 44444555 5899997 57765543
No 229
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=30.72 E-value=1.5e+02 Score=20.32 Aligned_cols=40 Identities=15% Similarity=-0.010 Sum_probs=32.9
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEccCCCCchHH
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEENLGSKSELL 45 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~~ 45 (225)
+.|+|-++++-+..++.+++..+.++..+.++......++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl 41 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDL 41 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccc
Confidence 6789999999999999999999999988888765444444
No 230
>COG3150 Predicted esterase [General function prediction only]
Probab=30.39 E-value=56 Score=24.19 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=26.3
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
+-|++|+.||.+.+..++++..+-.+-.+.+.
T Consensus 3 lYlHGFnSSP~shka~l~~q~~~~~~~~i~y~ 34 (191)
T COG3150 3 LYLHGFNSSPGSHKAVLLLQFIDEDVRDIEYS 34 (191)
T ss_pred EEEecCCCCcccHHHHHHHHHHhccccceeee
Confidence 57899999999999999999987665555543
No 231
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=29.54 E-value=2e+02 Score=20.15 Aligned_cols=74 Identities=8% Similarity=0.021 Sum_probs=37.8
Q ss_pred eEEeccCCChHHHHHHHHHHh----hCCcceEEEccCCCC-chHHHhhCCCCCccceEE--e-CCeeeh------hhHHH
Q 041305 6 VKVLGFSPSPFVMRARIALKI----KSVEYEFLEENLGSK-SELLLKSNPVHKKIPVLI--H-NDKPVC------ESLII 71 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~-~~~~~~~~p~~g~vP~L~--~-~g~~l~------~S~~I 71 (225)
+..|+.++|+.|+...=.+.. .+-.+..+.++.+.. ...+....-. ..+|+++ + +|..+. ....|
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V-~~iPt~v~~~~~G~~v~~~~G~~~~~~l 102 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV-DGIPHFVFLDREGNEEGQSIGLQPKQVL 102 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC-CCCCEEEEECCCCCEEEEEeCCCCHHHH
Confidence 455677799999876544432 222244455554322 1233333333 4689886 3 565432 23445
Q ss_pred HHHHHHhhC
Q 041305 72 VEYVDEAWS 80 (225)
Q Consensus 72 ~~yL~~~~~ 80 (225)
...|.+...
T Consensus 103 ~~~l~~l~~ 111 (142)
T cd02950 103 AQNLDALVA 111 (142)
T ss_pred HHHHHHHHc
Confidence 555555553
No 232
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=29.02 E-value=66 Score=19.11 Aligned_cols=31 Identities=10% Similarity=-0.092 Sum_probs=20.0
Q ss_pred EEeccCCChHHHHHHHHHHhhCCcceEEEcc
Q 041305 7 KVLGFSPSPFVMRARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 7 ~L~~~~~s~~~~~v~~~L~~~gi~~~~~~~~ 37 (225)
+||......-++.++-+|+..||++....-.
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 6777777778899999999999999877543
No 233
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=28.52 E-value=1.6e+02 Score=18.72 Aligned_cols=57 Identities=7% Similarity=-0.031 Sum_probs=32.5
Q ss_pred CeEEeccCCChHHHHHHHHHHh-----hCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCe
Q 041305 5 DVKVLGFSPSPFVMRARIALKI-----KSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDK 63 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~-----~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 63 (225)
.+..++.++|+.|+...=.+.. .+..+....+|... .+.+.+.-.- ..+|++. .+|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-~~~~~~~~~i-~~~Pt~~~~~~g~ 82 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-EPGLSGRFFV-TALPTIYHAKDGV 82 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-CHhHHHHcCC-cccCEEEEeCCCC
Confidence 3667788899999976533322 23345555556533 3334433333 4789886 4453
No 234
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=28.35 E-value=2e+02 Score=19.62 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=33.2
Q ss_pred eEEeccCCChHHHHHHHHHHhhCC--c--ceEEEccCCCCchHHHhhCCCCCccceEE--eCCeee
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSV--E--YEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKPV 65 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi--~--~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l 65 (225)
+.-++-++||.|+.+.=.++..-- + .....+|.+.. +++...--- ..+|++. .+|..+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~-~~la~~~~V-~~iPTf~~fk~G~~v 81 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV-PDFNKMYEL-YDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC-HHHHHHcCC-CCCCEEEEEECCEEE
Confidence 344677899999977555433211 1 34455665443 444443333 4699997 667654
No 235
>PRK15371 effector protein YopJ; Provisional
Probab=28.27 E-value=2.2e+02 Score=23.05 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHHh
Q 041305 126 AAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERFC 199 (225)
Q Consensus 126 ~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 199 (225)
...+++...++.||..++ .+.|+- +.++..|+-..+.+...... .++|..+ .-+..-...++.++
T Consensus 23 ~~~~~L~~~i~~le~~~~----~G~~~~-~~~~~~Di~~lp~lv~~~N~-r~P~LNL---~~f~s~~~f~~aik 87 (287)
T PRK15371 23 ISNEELKNIITQLEDDIA----DGSWIH-KNYARTDLEVMPALVAQANN-KYPEMNL---KLVTSPLDLSIEIK 87 (287)
T ss_pred hhHHHHHHHHHHHHHHHH----cCCCCC-chhHHhhHHhhHHHHHHHhc-cCCCCCe---eecCCHHHHHHHHH
Confidence 356779999999999999 678873 56899999999999877653 2344444 33444455555554
No 236
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=28.12 E-value=2.6e+02 Score=24.56 Aligned_cols=73 Identities=14% Similarity=0.063 Sum_probs=47.1
Q ss_pred eEEeccCCChHHHHH-------HHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCee------ehhhHH
Q 041305 6 VKVLGFSPSPFVMRA-------RIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKP------VCESLI 70 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v-------~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~------l~~S~~ 70 (225)
+.-||-|||+.|.+. .-.|...|=+.....||.... ..+...--. ...|+|. .+|.. .-+...
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v-~gyPTlkiFrnG~~~~~Y~G~r~adg 123 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEV-RGYPTLKIFRNGRSAQDYNGPREADG 123 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcC-CCCCeEEEEecCCcceeccCcccHHH
Confidence 466788999999854 333444444777777775422 333333333 3578886 55553 556789
Q ss_pred HHHHHHHhhC
Q 041305 71 IVEYVDEAWS 80 (225)
Q Consensus 71 I~~yL~~~~~ 80 (225)
|+.||.++.+
T Consensus 124 Iv~wl~kq~g 133 (493)
T KOG0190|consen 124 IVKWLKKQSG 133 (493)
T ss_pred HHHHHHhccC
Confidence 9999998887
No 237
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=28.08 E-value=91 Score=19.26 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=17.0
Q ss_pred eEEeccCCChHHHHHHHHHHhh
Q 041305 6 VKVLGFSPSPFVMRARIALKIK 27 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~ 27 (225)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678889999999876666553
No 238
>PF12728 HTH_17: Helix-turn-helix domain
Probab=28.00 E-value=90 Score=17.25 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=21.5
Q ss_pred CccceEEeCCeeehhhHHHHHHHHHh
Q 041305 53 KKIPVLIHNDKPVCESLIIVEYVDEA 78 (225)
Q Consensus 53 g~vP~L~~~g~~l~~S~~I~~yL~~~ 78 (225)
|.+|....++...+.-..|.+|+.++
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 25 GKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred CCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 68888887788899999999998753
No 239
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=27.96 E-value=1.3e+02 Score=20.03 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=24.7
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEE
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLE 35 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~ 35 (225)
-.|...+..|...-++.+.+.+|+|+++..
T Consensus 58 ~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 58 KVLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 456677788899999999999999988764
No 240
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=27.72 E-value=1.7e+02 Score=18.59 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=30.2
Q ss_pred eEEeccCCChHHHHHHHH----HHhhC--CcceEEEccCCC-CchHHHhhCCCCCccceEE--eCCe
Q 041305 6 VKVLGFSPSPFVMRARIA----LKIKS--VEYEFLEENLGS-KSELLLKSNPVHKKIPVLI--HNDK 63 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~----L~~~g--i~~~~~~~~~~~-~~~~~~~~~p~~g~vP~L~--~~g~ 63 (225)
+.+++.++|+.|+...=. .+... -.+....++... ....+.+.-.- ..+|.++ .+|.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i-~~~Pt~~~~~~g~ 86 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-KGFPTFKYFENGK 86 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC-ccccEEEEEeCCC
Confidence 567788899999977322 22211 223444445432 13444333333 3689886 4454
No 241
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=27.60 E-value=1.3e+02 Score=20.09 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=25.4
Q ss_pred eEEeccCCChHHHHHHHHHHhhCCcceEEE
Q 041305 6 VKVLGFSPSPFVMRARIALKIKSVEYEFLE 35 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~gi~~~~~~ 35 (225)
+.|+|-++++-+..++.++...|.++-...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~ 30 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEID 30 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccc
Confidence 468999999999999999999997764443
No 242
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=26.41 E-value=81 Score=23.48 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=18.2
Q ss_pred CeEEeccCCChHHHHHHHHHHh
Q 041305 5 DVKVLGFSPSPFVMRARIALKI 26 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~ 26 (225)
.+.+|..+.||||++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 4678888999999999877764
No 243
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=26.33 E-value=80 Score=23.34 Aligned_cols=16 Identities=6% Similarity=0.231 Sum_probs=12.8
Q ss_pred eEEeccCCChHHHHHH
Q 041305 6 VKVLGFSPSPFVMRAR 21 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~ 21 (225)
|.+|+...||||....
T Consensus 1 I~~~~D~~cP~cyl~~ 16 (201)
T cd03024 1 IDIWSDVVCPWCYIGK 16 (201)
T ss_pred CeEEecCcCccHHHHH
Confidence 4688899999999444
No 244
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=26.28 E-value=2.2e+02 Score=19.50 Aligned_cols=57 Identities=16% Similarity=0.272 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHH----HhhCCcceEEEccCCCC------chHHHhhCCCCC-ccceEE--eCCeeehhhH
Q 041305 12 SPSPFVMRARIAL----KIKSVEYEFLEENLGSK------SELLLKSNPVHK-KIPVLI--HNDKPVCESL 69 (225)
Q Consensus 12 ~~s~~~~~v~~~L----~~~gi~~~~~~~~~~~~------~~~~~~~~p~~g-~vP~L~--~~g~~l~~S~ 69 (225)
++||.|+.+.-.+ ....-.+..+.|+.... ...+...--. . .+|++. .+|..+.|..
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~~~~~~~~l~~~~ 107 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLLRWKTPQRLVEDE 107 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEEEEcCCceecchh
Confidence 7999999665433 33332345555655321 2333322221 3 699997 4555555443
No 245
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=26.11 E-value=61 Score=25.82 Aligned_cols=56 Identities=9% Similarity=-0.053 Sum_probs=36.2
Q ss_pred HHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeee----hhhHHHHHHHHHhh
Q 041305 23 ALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPV----CESLIIVEYVDEAW 79 (225)
Q Consensus 23 ~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l----~~S~~I~~yL~~~~ 79 (225)
+++..|+++++..+.+. ..++-|...+.. |-+||-..++..+ .....|.+.|.+.+
T Consensus 211 ~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~-gi~pV~~i~~~~~~~~~~~~gp~~~~l~~~~ 273 (279)
T cd01557 211 LARDLGIKVEERPITRDELYEADEVFATGTAA-VVTPVGEIDYRGKEPGEGEVGPVTKKLYDLL 273 (279)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEeccee-EEEEEEEEccccccCCCCCCCHHHHHHHHHH
Confidence 45667999999988754 333444555566 8899998666555 34455666665444
No 246
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=26.01 E-value=1.9e+02 Score=18.56 Aligned_cols=53 Identities=8% Similarity=-0.124 Sum_probs=30.4
Q ss_pred CeEEeccCCChHHHHHHHHHHh----hCCcceEEEccCCCCchHHHhhCCCCCccceEE
Q 041305 5 DVKVLGFSPSPFVMRARIALKI----KSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI 59 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~----~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~ 59 (225)
-+..++.++|+.|+...=.+.. .+-.+....+|... ...+.+...- ..+|++.
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i-~~~Pt~~ 78 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK-YESLCQQANI-RAYPTIR 78 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc-hHHHHHHcCC-CcccEEE
Confidence 3567788899999876433322 22124555566543 3444433333 5789886
No 247
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=25.97 E-value=1.9e+02 Score=18.71 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=30.5
Q ss_pred eEEeccCCChHHHHHHHHHH-----hhCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCC
Q 041305 6 VKVLGFSPSPFVMRARIALK-----IKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HND 62 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~-----~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g 62 (225)
+..++-++|+.|+...=.++ +.++ ....+|.....+.+.+.--- ..+|++. .+|
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~--~~~~vd~~~~~~~l~~~~~V-~~~PT~~lf~~g 82 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQI--RHLAIEESSIKPSLLSRYGV-VGFPTILLFNST 82 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccC--ceEEEECCCCCHHHHHhcCC-eecCEEEEEcCC
Confidence 56677889999997764443 3343 34445543233444433333 4789886 444
No 248
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=25.96 E-value=1.9e+02 Score=18.74 Aligned_cols=56 Identities=9% Similarity=0.012 Sum_probs=32.3
Q ss_pred eEEeccCCChHHHHHHHHHHhh-----C-C----cceEEEccCCCCchHHHhhCCCCCccceEE--eCCe
Q 041305 6 VKVLGFSPSPFVMRARIALKIK-----S-V----EYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDK 63 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~-----g-i----~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 63 (225)
+..++.++|+.|+...-.+... + . .+....+|.... ..+.+..-- ..+|++. .+|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~~~~~v-~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIADRYRI-NKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHHHhCCC-CcCCEEEEEeCCc
Confidence 5677888999999876555321 1 1 234445554333 344433333 4789886 4554
No 249
>PRK13356 aminotransferase; Provisional
Probab=25.72 E-value=87 Score=25.00 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=36.1
Q ss_pred HHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhh
Q 041305 23 ALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAW 79 (225)
Q Consensus 23 ~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~ 79 (225)
+++..|+++++..+.+. ..++-|+..+.. |-+||-..++..+. ...|.+.|.+.+
T Consensus 221 ~a~~~gi~v~e~~i~~~eL~~adevfltns~~-gi~PV~~id~~~~~-~g~~~~~l~~~~ 278 (286)
T PRK13356 221 LLREDGVTVVETTLTYEDFLEADEVFSTGNYS-KVVPVTRFDDRSLQ-PGPVTRRARELY 278 (286)
T ss_pred HHHHcCCeEEEEecCHHHHHhcCceEEecChh-eEEEEEEECCEEec-CChHHHHHHHHH
Confidence 55677999999988754 344445555666 78999987776663 245555554443
No 250
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.66 E-value=67 Score=21.98 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhCCcceEEEccCCCC-chHHHhhCCCCCccceEEe---CCeeehhhHHHHHHHHHhhC
Q 041305 16 FVMRARIALKIKSVEYEFLEENLGSK-SELLLKSNPVHKKIPVLIH---NDKPVCESLIIVEYVDEAWS 80 (225)
Q Consensus 16 ~~~~v~~~L~~~gi~~~~~~~~~~~~-~~~~~~~~p~~g~vP~L~~---~g~~l~~S~~I~~yL~~~~~ 80 (225)
|....+=+.+..|++.+-...+.... ..+-....|+.|-+|.++| -..+.-|..-|+.||.++--
T Consensus 24 fP~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 24 FPALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred hHHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 34455666777888777655542211 1111224555588898874 35677788889999987665
No 251
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=24.99 E-value=2.1e+02 Score=21.68 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhCCcceEE---EccCCCCchHHHhhCCCCCccceEE
Q 041305 17 VMRARIALKIKSVEYEFL---EENLGSKSELLLKSNPVHKKIPVLI 59 (225)
Q Consensus 17 ~~~v~~~L~~~gi~~~~~---~~~~~~~~~~~~~~~p~~g~vP~L~ 59 (225)
-.+||....-.|||.+.+ .|.++...-.++...-. |++|+++
T Consensus 148 D~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~lg~~-g~lP~~l 192 (200)
T TIGR03759 148 DERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQLGLQ-GQLPAVV 192 (200)
T ss_pred HHHHHHHHHHcCCCHHHeecCeeEEecCcchHHHccCC-CCCCEEE
Confidence 456666666667664433 23443333344444434 7889887
No 252
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=24.87 E-value=81 Score=24.48 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=35.9
Q ss_pred HHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeee--hhhHHHHHHHHHh
Q 041305 23 ALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPV--CESLIIVEYVDEA 78 (225)
Q Consensus 23 ~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l--~~S~~I~~yL~~~ 78 (225)
.++..|+++++..+.+. ...+-|...+.. |-+|+-..++..+ .....|.+.|.+.
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~-gv~pV~~i~~~~~~~~~~~~~~~~l~~~ 255 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAA-EVTPVTEIDGRGIGDGKPGPVTRKLREL 255 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccc-eEEEEEEECCeecCCCCCCHHHHHHHHh
Confidence 45667999999887654 333344455556 8899998776655 3445676666543
No 253
>PRK13947 shikimate kinase; Provisional
Probab=24.79 E-value=1.1e+02 Score=21.97 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=26.4
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEE
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFL 34 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~ 34 (225)
.+.|.|.++|+-+...+.+.+..|++|-..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~ 32 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDT 32 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 389999999999999999999999987443
No 254
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=24.31 E-value=1.2e+02 Score=22.06 Aligned_cols=32 Identities=9% Similarity=-0.043 Sum_probs=20.4
Q ss_pred eEEeccCCChHHHHH----HHHHHhhCCcceEEEcc
Q 041305 6 VKVLGFSPSPFVMRA----RIALKIKSVEYEFLEEN 37 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v----~~~L~~~gi~~~~~~~~ 37 (225)
|.+|+...||||... +-+....++.++.+.+.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 468888999999854 33333446555555443
No 255
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=24.17 E-value=1.1e+02 Score=24.05 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=36.0
Q ss_pred HHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhh
Q 041305 23 ALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAW 79 (225)
Q Consensus 23 ~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~ 79 (225)
.++..|+++++..+.+. ..++-|...+-. |-+||...|+..+ ++..+.+.|.+.+
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~-gi~pV~~id~~~~-~~g~~~~~l~~~~ 265 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLM-PVWPVRAIGETSY-SSGTLTRYLQPLC 265 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcc-eEEEEEEECCEEc-cchHHHHHHHHHH
Confidence 45566999999988754 333444555566 8899998777655 3346666665544
No 256
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=24.14 E-value=1.2e+02 Score=21.74 Aligned_cols=33 Identities=6% Similarity=-0.069 Sum_probs=28.0
Q ss_pred CCCCCeEEeccCCChHHHHHHHHHHhhCCcceEE
Q 041305 1 MAKSDVKVLGFSPSPFVMRARIALKIKSVEYEFL 34 (225)
Q Consensus 1 M~~~~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~ 34 (225)
|. ..+.|.|.++|+-+-..+.+.+..|++|-..
T Consensus 1 ~~-~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 1 MT-QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CC-CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 55 4588999999999999999999999987443
No 257
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.73 E-value=3.2e+02 Score=20.52 Aligned_cols=89 Identities=12% Similarity=0.068 Sum_probs=48.8
Q ss_pred CCCeEEeccCCChHHH----HHHHHHHhhCCcceEEEccCCC-CchHHHhhCCCCC-ccceEEeCCeeehhhHHHHHHHH
Q 041305 3 KSDVKVLGFSPSPFVM----RARIALKIKSVEYEFLEENLGS-KSELLLKSNPVHK-KIPVLIHNDKPVCESLIIVEYVD 76 (225)
Q Consensus 3 ~~~~~L~~~~~s~~~~----~v~~~L~~~gi~~~~~~~~~~~-~~~~~~~~~p~~g-~vP~L~~~g~~l~~S~~I~~yL~ 76 (225)
...|..|..-.|||+. +++-+.+-.|..+..+.+-+.- ... +| .+|.....+.-=......-+|..
T Consensus 7 ~ktIef~fdf~SP~ayL~~~~~~~laq~~ga~v~~rP~llg~vfk~--------tG~~~Pl~~~~~~~dY~~~d~~R~ak 78 (203)
T COG3917 7 NKTIEFYFDFSSPYAYLAWPRLPALAQAYGAAVALRPILLGGVFKA--------TGNGVPLIKTPQPGDYITLDLKREAK 78 (203)
T ss_pred CceeEEEEecCCchHHhhhhhhHHHHHHcCCceEEEeeeeceeEee--------cCCCCcccccCCCCceehHHHHHHHH
Confidence 3568888777899998 5677777889988888765420 101 13 56766533211112222333333
Q ss_pred HhhCCC--CCCCCCCCHHHHHHHHHH
Q 041305 77 EAWSSS--GPSILPSDPYDRAVARFW 100 (225)
Q Consensus 77 ~~~~~~--~~~l~p~~~~~~~~~~~~ 100 (225)
.++-+ .+..+|.+..-.++...+
T Consensus 79 -r~Glp~~f~~~fp~nt~~~~R~~~~ 103 (203)
T COG3917 79 -RHGLPLRFPRHFPPNTLGAARAMIA 103 (203)
T ss_pred -HcCCccccCCCCCCchHHHHHHHHH
Confidence 33322 345667655555555444
No 258
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=23.64 E-value=1.8e+02 Score=18.82 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=33.4
Q ss_pred eEEeccCCChHHHHH-----HHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEE
Q 041305 6 VKVLGFSPSPFVMRA-----RIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI 59 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v-----~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~ 59 (225)
++||.-..+|.|++. +++=++.+=.|+...+|... .|+......- --+|+|+
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~-qP~lAE~~~I-vATPtLI 62 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLK-NPQLAEEDKI-LATPTLS 62 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc-CHhHHhHCCE-EEecHHh
Confidence 688888888888865 22233444459988888744 4555555554 4667765
No 259
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=23.28 E-value=1.6e+02 Score=21.24 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHHHhhCCcceEEEccCCCCchH
Q 041305 12 SPSPFVMRARIALKIKSVEYEFLEENLGSKSEL 44 (225)
Q Consensus 12 ~~s~~~~~v~~~L~~~gi~~~~~~~~~~~~~~~ 44 (225)
+.-+.+++++-.|+..|++|+...+..-..+++
T Consensus 11 SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~ 43 (150)
T PF00731_consen 11 SDLPIAEEAAKTLEEFGIPYEVRVASAHRTPER 43 (150)
T ss_dssp GGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHH
Confidence 366889999999999999999887765333333
No 260
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=23.04 E-value=1.4e+02 Score=21.86 Aligned_cols=30 Identities=7% Similarity=-0.146 Sum_probs=19.6
Q ss_pred eEEeccCCChHHHHH----HHHHHhh--CCcceEEE
Q 041305 6 VKVLGFSPSPFVMRA----RIALKIK--SVEYEFLE 35 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v----~~~L~~~--gi~~~~~~ 35 (225)
|.+|..+.||||... +-+.+.. ++.++.+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~ 38 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHL 38 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEe
Confidence 889999999999844 3333344 45555443
No 261
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=23.01 E-value=3.3e+02 Score=20.38 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=30.7
Q ss_pred eEEeccCCChHHHHHHHHH-----HhhCCcceEEEccCCCCchHHHhhCCCCCccceEE--eCCeeehh
Q 041305 6 VKVLGFSPSPFVMRARIAL-----KIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDKPVCE 67 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L-----~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l~~ 67 (225)
+..++.++|+.|+.+-=.| .+.++. .+.++... ....-+- ..+|++. .+|..+..
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vk--FvkI~ad~----~~~~~~i-~~lPTlliyk~G~~v~~ 167 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTK--FVKIISTQ----CIPNYPD-KNLPTILVYRNGDIVKQ 167 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCE--EEEEEhHH----hHhhCCC-CCCCEEEEEECCEEEEE
Confidence 3455678999999663333 233343 44444322 1233455 6899997 57765443
No 262
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=22.65 E-value=79 Score=18.84 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=15.8
Q ss_pred eEEeccC----CChHHHHHHHHHHh
Q 041305 6 VKVLGFS----PSPFVMRARIALKI 26 (225)
Q Consensus 6 ~~L~~~~----~s~~~~~v~~~L~~ 26 (225)
++||.+- .|.||.||-.+|..
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 6777543 78899999888864
No 263
>PRK09301 circadian clock protein KaiB; Provisional
Probab=22.64 E-value=1.9e+02 Score=19.43 Aligned_cols=53 Identities=17% Similarity=0.116 Sum_probs=34.6
Q ss_pred CeEEeccCCChHHHHH-----HHHHHhhCCcceEEEccCCCCchHHHhhCCCCCccceEE
Q 041305 5 DVKVLGFSPSPFVMRA-----RIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLI 59 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v-----~~~L~~~gi~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~ 59 (225)
.++||.-..+|.|++. +++=++.+=.|+...+|... .++......- --+|+|+
T Consensus 8 ~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~-qPelAE~~~I-vATPTLI 65 (103)
T PRK09301 8 ILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLK-NPQLAEEDKI-LATPTLA 65 (103)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc-CHhHHhHCCe-EEecHHh
Confidence 3688988888888865 23333444459998888744 4555555554 4677775
No 264
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=22.60 E-value=55 Score=22.76 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=25.7
Q ss_pred CeEEeccCCChHHHHH----HHHHHhh-CCcceEEEccCC-CCchHHHhhCCCCCccceEE
Q 041305 5 DVKVLGFSPSPFVMRA----RIALKIK-SVEYEFLEENLG-SKSELLLKSNPVHKKIPVLI 59 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v----~~~L~~~-gi~~~~~~~~~~-~~~~~~~~~~p~~g~vP~L~ 59 (225)
.+.++.-++||.|++. .-+++.. +|++.....|-. .....++. +-. ..||+++
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~-~~IP~~I 102 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGG-RSIPTFI 102 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS---SSEEE
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCC-eecCEEE
Confidence 4677788899999954 3444445 676666654411 11122233 444 5799998
No 265
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=21.94 E-value=70 Score=24.79 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=17.6
Q ss_pred CeEEeccCCChHHHHHHHHHHh
Q 041305 5 DVKVLGFSPSPFVMRARIALKI 26 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~ 26 (225)
.+.+|..+.||||++..--+..
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHH
Confidence 4778889999999998765554
No 266
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=21.88 E-value=2.2e+02 Score=17.94 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=31.8
Q ss_pred CeEEeccCCChHHHHHHHHH-----HhhC--CcceEEEccCCCCchHHHhhCCCCCccceEE--eCCe
Q 041305 5 DVKVLGFSPSPFVMRARIAL-----KIKS--VEYEFLEENLGSKSELLLKSNPVHKKIPVLI--HNDK 63 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L-----~~~g--i~~~~~~~~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 63 (225)
.+..++.++|+.|+...-.+ .+.+ ..+....+|.... ....+...- ..+|++. .+|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v-~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-RELCSEFQV-RGYPTLLLFKDGE 84 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-hhhHhhcCC-CcCCEEEEEeCCC
Confidence 35677888999999663322 3333 2455566665433 233333333 4789876 4554
No 267
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=21.84 E-value=1.1e+02 Score=24.77 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=34.3
Q ss_pred HHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeeh--hhHHHHHHHHH
Q 041305 23 ALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVC--ESLIIVEYVDE 77 (225)
Q Consensus 23 ~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~--~S~~I~~yL~~ 77 (225)
+++..|+++++..+.+. ..++-|+..+.. |-+||-..|+..+. ....|.+.|.+
T Consensus 228 ~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~-gi~PV~~id~~~~~~g~~g~~~~~L~~ 286 (306)
T PRK06606 228 LAKDLGIEVIERRITRDELYIADEVFFTGTAA-EVTPIREVDGRQIGNGKRGPITEKLQS 286 (306)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcc-eEEEEEEECcEECCCCCCCHHHHHHHH
Confidence 56677999999988754 333444555666 88999987776663 22344444433
No 268
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.77 E-value=2.9e+02 Score=23.14 Aligned_cols=106 Identities=13% Similarity=0.044 Sum_probs=60.5
Q ss_pred cceEEeCCeeehhhHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHhhhH--------hhhhhhhhcccC-CHHHHH
Q 041305 55 IPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEK--------WFSALRDIGSAN-GAEAKK 125 (225)
Q Consensus 55 vP~L~~~g~~l~~S~~I~~yL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~-~~~~~~ 125 (225)
.+.+.+.+..+.|+.+|+.-|...-. .-+-+-+..++..+..|+.-+.+. ++..+...+... +.+.
T Consensus 98 w~~~~~~dQ~~VEaa~la~aL~~a~~---~lW~~L~~~~k~~l~~wL~~~~~~~~~~nNW~lF~v~v~~~L~~~G~~~-- 172 (361)
T PF10022_consen 98 WGFIGDYDQRLVEAASLALALLRAPE---WLWDPLDEEEKENLVDWLKQIRGIKPPDNNWLLFRVMVEAFLKKVGEEY-- 172 (361)
T ss_pred cCCcccchhhHhHHHHHHHHHHHCHH---HHHhhCCHHHHHHHHHHHHhcCcCCCccchhHHHHHHHHHHHHHcCCCC--
Confidence 33444556889999999998875433 113345778888888887755541 122222221111 1111
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhh
Q 041305 126 AAIEQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGW 170 (225)
Q Consensus 126 ~~~~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~ 170 (225)
-...+...++.+|+.-. +.+|.....-.-.|.+..-+++.
T Consensus 173 -d~~~i~~~l~~~e~~Y~----GdGWY~DG~~~~~DYYns~aih~ 212 (361)
T PF10022_consen 173 -DEERIDYDLERIEEWYL----GDGWYSDGPEFQFDYYNSWAIHP 212 (361)
T ss_pred -cHHHHHHHHHHHHHHhc----cCCccccCCccCCcchHHHHHHH
Confidence 12667777888887655 56666544455677776544443
No 269
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp. causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.
Probab=21.46 E-value=3.2e+02 Score=20.26 Aligned_cols=61 Identities=18% Similarity=0.100 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhhccCCCccccCCCCChhHHHHHhhHhhHhhHhhhccccccCcCcchHHHHHHHHH
Q 041305 129 EQLIEVLVLLEDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNEVKLLDEVKTPGLFKWAERF 198 (225)
Q Consensus 129 ~~~~~~l~~le~~L~~~~~~~~~l~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 198 (225)
+.+....+.+++.+. .+.|+ .+.++..|+.+.+.+...... .+++..+ .-+..-....+.+
T Consensus 2 ~~L~~y~~~~~~~~~----~g~~~-~~~~~~~D~~~lp~lv~~~N~-r~P~LnL---~~~~~~~~~~~~i 62 (177)
T PF03421_consen 2 ESLKEYIERLEDDIK----NGSWP-NESYAELDIKMLPALVAAENA-RYPGLNL---HFFDSPEDFVQAI 62 (177)
T ss_pred hHHHHHHHHHHHHHH----hCCCC-CcchhhhhHHHHHHHHHHHhh-cCCCCce---EEcCCcHHHHHHH
Confidence 457788888999998 67887 678999999999999877653 2234433 3344445555555
No 270
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=21.29 E-value=88 Score=23.76 Aligned_cols=56 Identities=18% Similarity=0.092 Sum_probs=37.7
Q ss_pred HHHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhh
Q 041305 22 IALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAW 79 (225)
Q Consensus 22 ~~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~ 79 (225)
-+++..|+++++..+... ...+-|+..+-. |-.||-..++..+. ...|.+.|.+.|
T Consensus 173 ~~~~~~g~~v~e~~i~~~~L~~ade~fl~ns~~-gi~pV~~i~~~~~~-~~p~~~~L~~~~ 231 (231)
T PF01063_consen 173 ELAKELGIPVEERPITLDDLQQADEVFLTNSLR-GIRPVKSIDGRSFG-PGPITRRLQEAY 231 (231)
T ss_dssp HHHHHTTSEEEEE-BBHHHHHTHSEEEEEETTT-EEEEEEEETTEEST-THHHHHHHHHHH
T ss_pred HHHHhCCCCcEEEEeCHHHhhhhhheEEecchh-hEEEEEEECCEECC-CCHHHHHHHHhC
Confidence 344457999999888754 222334444555 88999888888777 888888887654
No 271
>PRK13949 shikimate kinase; Provisional
Probab=21.28 E-value=1.3e+02 Score=21.81 Aligned_cols=30 Identities=7% Similarity=0.084 Sum_probs=26.5
Q ss_pred CeEEeccCCChHHHHHHHHHHhhCCcceEE
Q 041305 5 DVKVLGFSPSPFVMRARIALKIKSVEYEFL 34 (225)
Q Consensus 5 ~~~L~~~~~s~~~~~v~~~L~~~gi~~~~~ 34 (225)
++.|.|.++|+-+-..+++.+..|++|-..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~ 32 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDL 32 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecc
Confidence 589999999999999999999999876554
No 272
>PF13728 TraF: F plasmid transfer operon protein
Probab=20.99 E-value=1.6e+02 Score=22.56 Aligned_cols=32 Identities=6% Similarity=-0.101 Sum_probs=24.4
Q ss_pred eEEeccCCChHHH----HHHHHHHhhCCcceEEEcc
Q 041305 6 VKVLGFSPSPFVM----RARIALKIKSVEYEFLEEN 37 (225)
Q Consensus 6 ~~L~~~~~s~~~~----~v~~~L~~~gi~~~~~~~~ 37 (225)
+.+++.+.||+|+ .++.+....|+++-.+.+|
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~D 159 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLD 159 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecC
Confidence 6777888999998 4566667778877766665
No 273
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=20.92 E-value=1.2e+02 Score=24.39 Aligned_cols=42 Identities=10% Similarity=0.070 Sum_probs=29.7
Q ss_pred HHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeee
Q 041305 23 ALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPV 65 (225)
Q Consensus 23 ~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l 65 (225)
++...|+++++..+.+. ...+-|...+.. |-+||-..++..+
T Consensus 220 la~~~g~~v~e~~i~~~eL~~adevfltns~~-gv~PV~~id~~~~ 264 (298)
T TIGR01122 220 LAKELGIEVVEQPISREELYTADEAFFTGTAA-EITPIREVDGRKI 264 (298)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcc-eEEEEEEECCEEC
Confidence 46677999999988764 333444555666 8999998776655
No 274
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=20.86 E-value=1.3e+02 Score=24.16 Aligned_cols=55 Identities=15% Similarity=0.033 Sum_probs=35.3
Q ss_pred HHHhhCCcceEEEccCC---CCchHHHhhCCCCCccceEEeCCeeehhhHHHHHHHHHhh
Q 041305 23 ALKIKSVEYEFLEENLG---SKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAW 79 (225)
Q Consensus 23 ~L~~~gi~~~~~~~~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~~S~~I~~yL~~~~ 79 (225)
+++..|+++++..+.+. ..++-|...+.. |-+||...++..+. ...+.+.|.+.+
T Consensus 225 ~a~~~g~~v~e~~i~~~eL~~adevfltnS~~-gi~PV~~i~~~~~~-~g~~~~~l~~~~ 282 (292)
T PRK07544 225 LAKRRGIEVVERHIMPEELAGFSECFLTGTAA-EVTPVSEIGEYRFT-PGAITRDLMDDY 282 (292)
T ss_pred HHHHcCCeEEEEecCHHHHhhcCceeecCccc-eEEEEEEEeeEEeC-CChHHHHHHHHH
Confidence 45567999999988754 334445556666 89999987666552 334555454433
No 275
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=20.15 E-value=2.6e+02 Score=18.09 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=31.7
Q ss_pred eEEeccCCChHHHHHHHHHHhh---CCcceEEEccCCCCc--hHHHhhCCCCCccceEE--eCCeee
Q 041305 6 VKVLGFSPSPFVMRARIALKIK---SVEYEFLEENLGSKS--ELLLKSNPVHKKIPVLI--HNDKPV 65 (225)
Q Consensus 6 ~~L~~~~~s~~~~~v~~~L~~~---gi~~~~~~~~~~~~~--~~~~~~~p~~g~vP~L~--~~g~~l 65 (225)
+..++.++|+.|+...=.++.. --.+....++.+... ..+.+...- ..+|+++ .+|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI-IEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC-CcCCEEEEEeCCeEE
Confidence 4556778999998664433321 112345555543322 244433333 4689886 566543
Done!