BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041306
         (118 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S-
           Adenosylmethionine-dependent Radical Enzyme
 pdb|1R30|B Chain B, The Crystal Structure Of Biotin Synthase, An S-
           Adenosylmethionine-dependent Radical Enzyme
          Length = 369

 Score = 72.0 bits (175), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 48/123 (39%), Positives = 59/123 (47%), Gaps = 30/123 (24%)

Query: 1   GIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKGTPLQDQKPVEIWEMIRMIATA 60
           GI+GLGE  +DR G            ESVPIN L+ VKGTPL D   V+ ++ IR IA A
Sbjct: 214 GIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVA 273

Query: 61  RIVMP-----------------KAM-------------KLLTTPNNNFVADQLMFKVLGL 90
           RI+MP                 +AM             KLLTTPN     D  +F+ LGL
Sbjct: 274 RIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGL 333

Query: 91  TPK 93
            P+
Sbjct: 334 NPQ 336


>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
           Pseudomallei
 pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
           Pseudomallei
 pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
           Pseudomallei
 pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
           Pseudomallei
 pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
           Pseudomallei
 pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
           Pseudomallei
          Length = 372

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 53  MIRMIATARIVMPKAMKLLTTPNNNFVADQLMFKVLGLTPKAPSFHEDEANVSKAESYQE 112
           ++++I  +  V    +  +  PNNNF   +L  K+L L  + P + +    V   E+   
Sbjct: 255 LMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSG 314

Query: 113 AISSSG 118
           A   +G
Sbjct: 315 AYYGNG 320


>pdb|3ILV|A Chain A, Crystal Structure Of A Glutamine-Dependent Nad(+)
           Synthetase From Cytophaga Hutchinsonii
          Length = 634

 Score = 27.3 bits (59), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 94  APSFHEDEANVSKAESYQEAISSSG 118
           APSFH D+ N+     Y+  I SSG
Sbjct: 592 APSFHXDDFNIDPRSWYRFPILSSG 616


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,790,964
Number of Sequences: 62578
Number of extensions: 84945
Number of successful extensions: 85
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 4
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)