Query 041306
Match_columns 118
No_of_seqs 150 out of 1300
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:51:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02389 biotin synthase 100.0 1E-29 2.2E-34 210.5 11.3 117 1-117 233-379 (379)
2 COG0502 BioB Biotin synthase a 99.9 6.8E-28 1.5E-32 197.4 9.8 94 1-95 199-322 (335)
3 PRK08508 biotin synthase; Prov 99.9 2.3E-26 5.1E-31 182.6 10.8 91 1-94 157-276 (279)
4 PRK15108 biotin synthase; Prov 99.9 1.1E-25 2.4E-30 183.9 12.0 96 1-96 191-316 (345)
5 PRK06256 biotin synthase; Vali 99.9 2.8E-23 6E-28 167.0 11.0 93 1-95 207-327 (336)
6 PRK08444 hypothetical protein; 99.9 1.9E-23 4.1E-28 171.7 10.0 94 1-96 209-344 (353)
7 KOG2900 Biotin synthase [Coenz 99.9 1.1E-22 2.3E-27 163.6 2.3 95 1-95 234-360 (380)
8 TIGR03550 F420_cofG 7,8-dideme 99.8 5.6E-21 1.2E-25 154.3 9.8 95 1-95 169-300 (322)
9 TIGR03699 mena_SCO4550 menaqui 99.8 6.8E-21 1.5E-25 153.8 9.0 94 1-96 201-334 (340)
10 PRK07360 FO synthase subunit 2 99.8 1.9E-20 4.2E-25 154.0 8.8 94 1-96 221-361 (371)
11 PRK05926 hypothetical protein; 99.8 5.2E-20 1.1E-24 152.2 10.4 96 1-98 227-368 (370)
12 TIGR03700 mena_SCO4494 putativ 99.8 3.4E-20 7.3E-25 151.3 9.1 94 1-96 208-345 (351)
13 PRK09240 thiH thiamine biosynt 99.8 8.3E-20 1.8E-24 150.3 8.0 97 1-98 223-365 (371)
14 TIGR00433 bioB biotin syntheta 99.8 2.6E-19 5.7E-24 140.7 9.4 87 2-90 179-296 (296)
15 PRK08445 hypothetical protein; 99.8 2.6E-19 5.6E-24 146.7 8.6 94 1-96 202-339 (348)
16 PRK09234 fbiC FO synthase; Rev 99.8 7.2E-19 1.6E-23 157.8 10.1 95 1-95 238-370 (843)
17 PRK05927 hypothetical protein; 99.8 1.2E-18 2.6E-23 143.2 9.1 94 1-96 205-340 (350)
18 TIGR00423 radical SAM domain p 99.8 2.2E-18 4.8E-23 138.1 9.4 94 1-96 165-303 (309)
19 TIGR03551 F420_cofH 7,8-dideme 99.8 1.9E-18 4.1E-23 140.3 9.1 94 1-96 199-339 (343)
20 PF06968 BATS: Biotin and Thia 99.7 2.2E-18 4.7E-23 117.9 5.7 63 30-92 1-93 (93)
21 PRK06267 hypothetical protein; 99.7 7E-18 1.5E-22 138.0 9.1 83 1-85 173-286 (350)
22 TIGR02351 thiH thiazole biosyn 99.7 6.3E-18 1.4E-22 138.9 8.2 93 1-94 222-360 (366)
23 smart00876 BATS Biotin and Thi 99.7 2.2E-17 4.7E-22 113.0 7.1 63 30-92 1-94 (94)
24 PRK06245 cofG FO synthase subu 99.7 1.3E-16 2.9E-21 128.6 9.7 95 1-95 173-304 (336)
25 PRK09234 fbiC FO synthase; Rev 99.7 4.6E-16 9.9E-21 139.9 10.2 93 1-95 686-825 (843)
26 PRK09613 thiH thiamine biosynt 99.6 2.1E-14 4.6E-19 122.3 10.0 93 1-93 240-381 (469)
27 PRK07094 biotin synthase; Prov 99.5 4.9E-14 1.1E-18 112.7 9.5 66 1-68 185-251 (323)
28 COG1060 ThiH Thiamine biosynth 99.5 2.2E-13 4.7E-18 113.2 8.6 95 1-97 219-358 (370)
29 TIGR00510 lipA lipoate synthas 98.4 6.9E-07 1.5E-11 72.7 5.5 58 1-60 213-272 (302)
30 TIGR01212 radical SAM protein, 98.3 1.1E-06 2.5E-11 70.7 6.5 84 2-87 184-287 (302)
31 PTZ00413 lipoate synthase; Pro 98.3 1.1E-06 2.3E-11 74.1 4.8 43 1-45 301-345 (398)
32 PRK12928 lipoyl synthase; Prov 98.2 1.5E-06 3.3E-11 70.1 5.0 57 1-59 210-268 (290)
33 COG2516 Biotin synthase-relate 98.0 1.3E-05 2.9E-10 66.2 6.2 63 2-68 194-256 (339)
34 PRK05481 lipoyl synthase; Prov 97.8 4E-05 8.6E-10 61.7 5.2 34 1-36 202-235 (289)
35 PLN02428 lipoic acid synthase 97.7 5.7E-05 1.2E-09 62.8 4.6 33 1-35 253-285 (349)
36 COG1856 Uncharacterized homolo 97.7 0.00029 6.2E-09 56.4 8.3 79 14-94 170-250 (275)
37 TIGR01578 MiaB-like-B MiaB-lik 97.6 0.00017 3.6E-09 60.5 6.9 48 2-51 291-339 (420)
38 TIGR01579 MiaB-like-C MiaB-lik 97.6 0.00017 3.7E-09 59.9 6.7 55 2-58 296-352 (414)
39 PRK14331 (dimethylallyl)adenos 97.5 0.00034 7.4E-09 58.8 6.7 49 2-52 303-353 (437)
40 PRK14325 (dimethylallyl)adenos 97.5 0.00036 7.9E-09 58.6 6.9 51 2-54 307-359 (444)
41 TIGR00089 RNA modification enz 97.4 0.00044 9.5E-09 57.8 6.8 49 2-52 297-347 (429)
42 PRK14333 (dimethylallyl)adenos 97.3 0.00059 1.3E-08 57.6 6.7 49 2-52 313-363 (448)
43 TIGR01125 MiaB-like tRNA modif 97.3 0.00078 1.7E-08 56.4 6.9 50 2-53 293-344 (430)
44 PRK14328 (dimethylallyl)adenos 97.3 0.00067 1.5E-08 57.1 6.5 48 2-51 305-354 (439)
45 PRK14335 (dimethylallyl)adenos 97.3 0.00073 1.6E-08 57.3 6.7 49 2-52 316-366 (455)
46 TIGR01574 miaB-methiolase tRNA 97.3 0.00083 1.8E-08 56.5 6.8 49 2-52 305-355 (438)
47 PRK14339 (dimethylallyl)adenos 97.2 0.00096 2.1E-08 56.1 6.8 49 2-52 288-338 (420)
48 smart00729 Elp3 Elongator prot 97.2 0.00029 6.4E-09 50.5 3.2 52 2-55 158-214 (216)
49 PRK14862 rimO ribosomal protei 97.2 0.0013 2.7E-08 55.7 6.8 53 2-56 304-358 (440)
50 PRK14337 (dimethylallyl)adenos 97.2 0.0014 3.1E-08 55.4 7.0 49 2-52 307-357 (446)
51 PRK14334 (dimethylallyl)adenos 97.1 0.0011 2.4E-08 55.9 6.1 50 2-53 295-346 (440)
52 PRK14330 (dimethylallyl)adenos 97.1 0.00093 2E-08 56.1 5.3 41 2-44 298-339 (434)
53 PRK07379 coproporphyrinogen II 97.1 0.00094 2E-08 55.7 5.3 64 2-67 173-243 (400)
54 PRK14329 (dimethylallyl)adenos 97.1 0.00097 2.1E-08 56.8 5.1 49 2-52 331-382 (467)
55 TIGR00539 hemN_rel putative ox 97.0 0.0012 2.7E-08 53.9 5.4 63 2-66 158-223 (360)
56 PRK14338 (dimethylallyl)adenos 97.0 0.0019 4.1E-08 54.9 6.5 43 2-46 313-356 (459)
57 PRK14340 (dimethylallyl)adenos 97.0 0.0019 4E-08 54.8 6.3 47 2-50 306-355 (445)
58 PRK08207 coproporphyrinogen II 97.0 0.0016 3.4E-08 56.2 5.8 63 2-66 327-394 (488)
59 PRK14327 (dimethylallyl)adenos 97.0 0.00097 2.1E-08 57.8 4.4 47 2-50 370-418 (509)
60 PRK05799 coproporphyrinogen II 97.0 0.0018 3.8E-08 53.1 5.6 63 2-66 157-226 (374)
61 PRK14336 (dimethylallyl)adenos 96.8 0.0031 6.8E-08 53.0 6.4 48 2-51 282-332 (418)
62 TIGR03471 HpnJ hopanoid biosyn 96.8 0.00093 2E-08 56.5 3.0 40 2-43 344-384 (472)
63 PRK14326 (dimethylallyl)adenos 96.8 0.003 6.6E-08 54.4 6.1 47 2-50 315-363 (502)
64 PRK14332 (dimethylallyl)adenos 96.8 0.0033 7.1E-08 53.4 6.2 49 2-52 309-360 (449)
65 PRK08599 coproporphyrinogen II 96.8 0.0035 7.6E-08 51.5 6.0 62 2-65 158-226 (377)
66 PRK05904 coproporphyrinogen II 96.6 0.004 8.6E-08 51.4 5.4 62 2-65 161-224 (353)
67 TIGR02026 BchE magnesium-proto 96.6 0.0017 3.7E-08 55.6 3.2 41 2-44 344-385 (497)
68 PRK08208 coproporphyrinogen II 96.5 0.0065 1.4E-07 51.1 6.0 63 2-66 199-262 (430)
69 PRK08898 coproporphyrinogen II 96.5 0.0063 1.4E-07 50.6 5.7 61 2-64 179-242 (394)
70 PRK09058 coproporphyrinogen II 96.4 0.0052 1.1E-07 52.1 5.0 63 2-66 221-291 (449)
71 PRK05628 coproporphyrinogen II 96.4 0.0063 1.4E-07 50.0 5.2 62 2-65 166-234 (375)
72 TIGR01211 ELP3 histone acetylt 96.4 0.0052 1.1E-07 53.6 4.9 87 2-91 263-374 (522)
73 COG0621 MiaB 2-methylthioadeni 96.4 0.0058 1.3E-07 52.4 4.9 43 2-46 303-346 (437)
74 PRK09057 coproporphyrinogen II 96.2 0.0088 1.9E-07 49.5 5.3 63 2-66 161-230 (380)
75 PRK05660 HemN family oxidoredu 96.2 0.013 2.8E-07 48.6 6.0 63 2-66 165-230 (378)
76 PRK00955 hypothetical protein; 96.1 0.0058 1.3E-07 54.4 3.9 40 2-43 485-525 (620)
77 PRK06294 coproporphyrinogen II 96.1 0.0077 1.7E-07 49.7 4.1 63 2-66 161-230 (370)
78 cd01335 Radical_SAM Radical SA 96.1 0.013 2.8E-07 41.2 4.8 56 2-58 146-203 (204)
79 COG1242 Predicted Fe-S oxidore 96.0 0.014 3E-07 48.0 5.2 63 2-66 189-258 (312)
80 COG1032 Fe-S oxidoreductase [E 95.9 0.0098 2.1E-07 48.7 4.1 48 2-51 358-410 (490)
81 PRK06582 coproporphyrinogen II 95.8 0.021 4.5E-07 47.7 5.6 63 2-66 168-237 (390)
82 KOG4355 Predicted Fe-S oxidore 95.6 0.023 4.9E-07 48.9 4.9 61 2-64 346-408 (547)
83 COG0320 LipA Lipoate synthase 95.4 0.031 6.7E-07 45.9 4.9 33 2-36 220-252 (306)
84 PRK08446 coproporphyrinogen II 94.8 0.028 6.1E-07 46.0 3.2 42 2-45 156-198 (350)
85 PRK01254 hypothetical protein; 94.5 0.033 7.1E-07 50.4 3.0 40 2-43 564-607 (707)
86 PRK08629 coproporphyrinogen II 93.9 0.17 3.6E-06 43.0 6.1 62 2-65 205-270 (433)
87 TIGR01210 conserved hypothetic 92.1 0.69 1.5E-05 37.6 7.0 89 2-93 176-284 (313)
88 TIGR00538 hemN oxygen-independ 92.0 0.51 1.1E-05 40.0 6.4 62 2-65 209-276 (455)
89 PRK13347 coproporphyrinogen II 90.4 0.96 2.1E-05 38.4 6.5 62 2-65 210-277 (453)
90 PRK09249 coproporphyrinogen II 90.0 0.9 2E-05 38.5 6.0 61 2-64 209-275 (453)
91 COG0635 HemN Coproporphyrinoge 87.4 1.2 2.7E-05 37.7 5.1 62 2-65 195-262 (416)
92 KOG2672 Lipoate synthase [Coen 82.0 1.9 4.2E-05 35.9 3.7 39 2-42 263-301 (360)
93 COG4277 Predicted DNA-binding 78.7 5.3 0.00012 33.7 5.3 56 2-58 223-279 (404)
94 TIGR01290 nifB nitrogenase cof 76.8 8.4 0.00018 33.0 6.2 61 6-68 199-263 (442)
95 PRK08444 hypothetical protein; 75.2 15 0.00032 30.6 7.1 75 8-93 81-165 (353)
96 TIGR02493 PFLA pyruvate format 71.0 20 0.00042 27.0 6.4 55 6-61 170-233 (235)
97 PRK11145 pflA pyruvate formate 70.8 19 0.0004 27.5 6.3 59 4-63 173-240 (246)
98 PLN02951 Molybderin biosynthes 70.2 12 0.00025 31.2 5.4 51 6-59 211-261 (373)
99 TIGR03822 AblA_like_2 lysine-2 67.2 20 0.00043 29.1 6.1 59 4-67 239-297 (321)
100 TIGR03700 mena_SCO4494 putativ 64.3 57 0.0012 26.7 8.3 75 8-93 80-164 (351)
101 PRK07360 FO synthase subunit 2 61.0 78 0.0017 26.2 8.6 75 8-93 92-177 (371)
102 PRK14460 ribosomal RNA large s 56.3 40 0.00087 28.0 6.1 54 3-62 266-319 (354)
103 PRK05718 keto-hydroxyglutarate 49.1 96 0.0021 24.0 6.9 80 6-103 23-122 (212)
104 PF12994 DUF3878: Domain of un 47.3 67 0.0014 26.7 5.9 88 18-109 141-250 (299)
105 PF09182 PuR_N: Bacterial puri 47.0 8 0.00017 25.5 0.5 34 54-87 4-46 (70)
106 PRK14463 ribosomal RNA large s 43.5 83 0.0018 26.1 6.1 53 3-61 259-311 (349)
107 COG1031 Uncharacterized Fe-S o 41.6 26 0.00056 31.2 2.9 44 2-45 367-414 (560)
108 PF13213 DUF4021: Protein of u 41.2 7.3 0.00016 23.7 -0.4 16 1-16 28-43 (46)
109 PF12617 LdpA_C: Iron-Sulfur b 41.2 1.2E+02 0.0027 23.4 6.2 76 10-91 48-125 (183)
110 TIGR02666 moaA molybdenum cofa 39.7 93 0.002 24.9 5.7 52 5-59 164-216 (334)
111 PRK14466 ribosomal RNA large s 39.6 50 0.0011 27.6 4.2 48 3-56 259-306 (345)
112 PRK14455 ribosomal RNA large s 38.9 1E+02 0.0023 25.5 6.0 51 4-60 272-322 (356)
113 TIGR03151 enACPred_II putative 35.9 1.3E+02 0.0027 24.4 5.9 75 1-93 38-113 (307)
114 PRK14457 ribosomal RNA large s 35.8 1E+02 0.0022 25.6 5.5 53 3-61 264-316 (345)
115 TIGR03821 AblA_like_1 lysine-2 35.4 1.5E+02 0.0032 24.2 6.3 59 4-67 245-303 (321)
116 COG1060 ThiH Thiamine biosynth 35.3 1.9E+02 0.0041 24.4 7.0 76 8-94 91-176 (370)
117 PRK14467 ribosomal RNA large s 34.3 1.4E+02 0.0031 24.8 6.1 54 4-61 262-315 (348)
118 PF14044 NETI: NETI protein 34.1 45 0.00096 21.2 2.4 42 73-114 5-51 (57)
119 PRK14456 ribosomal RNA large s 33.4 1.2E+02 0.0027 25.4 5.6 51 2-58 286-336 (368)
120 PF10113 Fibrillarin_2: Fibril 32.8 68 0.0015 28.3 4.0 59 1-68 224-282 (505)
121 PF08799 PRP4: pre-mRNA proces 32.6 47 0.001 18.3 2.0 15 5-19 15-29 (30)
122 PRK05481 lipoyl synthase; Prov 31.5 92 0.002 25.0 4.4 48 47-94 176-229 (289)
123 PRK14464 ribosomal RNA large s 31.3 1.6E+02 0.0035 24.6 5.9 47 4-56 252-298 (344)
124 PRK08445 hypothetical protein; 31.2 2.6E+02 0.0056 23.1 7.1 74 8-92 74-157 (348)
125 TIGR03551 F420_cofH 7,8-dideme 31.1 2.9E+02 0.0062 22.4 8.1 76 7-93 70-155 (343)
126 PF13297 Telomere_Sde2_2: Telo 30.5 44 0.00096 21.4 1.9 29 3-33 27-57 (60)
127 PRK14465 ribosomal RNA large s 30.4 1.5E+02 0.0032 24.8 5.5 50 4-60 265-314 (342)
128 PRK05926 hypothetical protein; 29.6 3E+02 0.0065 23.0 7.3 74 8-93 100-183 (370)
129 COG1243 ELP3 Histone acetyltra 29.5 98 0.0021 27.5 4.5 67 2-68 255-329 (515)
130 PRK14462 ribosomal RNA large s 29.1 1.9E+02 0.0042 24.2 6.1 53 3-61 272-324 (356)
131 PRK14461 ribosomal RNA large s 28.9 73 0.0016 27.1 3.5 49 3-54 280-331 (371)
132 PRK14469 ribosomal RNA large s 28.0 2E+02 0.0044 23.5 6.0 51 3-60 260-310 (343)
133 COG0547 TrpD Anthranilate phos 27.7 1.6E+02 0.0034 24.7 5.3 97 6-104 50-164 (338)
134 PRK00164 moaA molybdenum cofac 25.6 1.9E+02 0.0041 23.1 5.2 52 6-60 170-222 (331)
135 TIGR00048 radical SAM enzyme, 25.0 2.5E+02 0.0055 23.3 6.0 48 4-57 268-315 (355)
136 PF11010 DUF2848: Protein of u 24.8 81 0.0018 24.6 2.9 30 6-35 5-35 (194)
137 PRK01222 N-(5'-phosphoribosyl) 24.6 1.9E+02 0.0041 22.1 4.9 71 12-94 12-82 (210)
138 TIGR00423 radical SAM domain p 24.5 3.6E+02 0.0079 21.4 8.2 75 8-93 37-121 (309)
139 PLN02363 phosphoribosylanthran 24.0 2E+02 0.0043 23.0 5.0 71 12-94 56-127 (256)
140 TIGR00238 KamA family protein. 23.8 2.6E+02 0.0056 22.8 5.8 58 4-66 262-319 (331)
141 PF04695 Pex14_N: Peroxisomal 23.7 53 0.0012 23.5 1.6 38 56-93 5-52 (136)
142 PF09050 SNN_linker: Stannin u 23.7 15 0.00032 19.6 -1.0 10 1-10 16-25 (26)
143 cd04743 NPD_PKS 2-Nitropropane 23.4 1.8E+02 0.0039 24.1 4.9 84 1-101 30-115 (320)
144 PRK14470 ribosomal RNA large s 22.5 2.6E+02 0.0057 23.1 5.6 51 2-59 254-304 (336)
145 PRK13958 N-(5'-phosphoribosyl) 21.7 2.2E+02 0.0047 21.7 4.8 71 12-94 10-80 (207)
146 PRK00164 moaA molybdenum cofac 21.4 4.2E+02 0.0091 21.0 6.8 71 8-91 50-120 (331)
147 TIGR01290 nifB nitrogenase cof 21.2 4.2E+02 0.0092 22.6 6.8 78 7-93 60-137 (442)
148 PRK11194 ribosomal RNA large s 20.9 3.4E+02 0.0075 22.8 6.1 54 2-61 270-323 (372)
149 PF00356 LacI: Bacterial regul 20.7 62 0.0013 19.2 1.2 17 76-92 29-45 (46)
150 KOG0814 Glyoxylase [General fu 20.6 63 0.0014 25.5 1.5 35 59-93 10-59 (237)
151 PF04574 DUF592: Protein of un 20.4 34 0.00073 25.8 0.0 21 76-96 56-76 (153)
152 PRK08898 coproporphyrinogen II 20.2 2.6E+02 0.0056 23.2 5.2 52 38-93 81-136 (394)
No 1
>PLN02389 biotin synthase
Probab=99.96 E-value=1e-29 Score=210.49 Aligned_cols=117 Identities=82% Similarity=1.186 Sum_probs=111.1
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc------------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM------------ 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~------------ 68 (118)
+|+|||||.+||++++..|++|+.++++||||+|+|+|||||++.+++++++++|+||++|++||+..
T Consensus 233 ~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~ 312 (379)
T PLN02389 233 GIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSM 312 (379)
T ss_pred EEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccccccCh
Confidence 59999999999999999999996569999999999999999999999999999999999999999876
Q ss_pred -----------------Cc-ccCCCCCHHHHHHHHHHcCCCCCCCCCcchhhhhhhhHhHHHHhhcc
Q 041306 69 -----------------KL-LTTPNNNFVADQLMFKVLGLTPKAPSFHEDEANVSKAESYQEAISSS 117 (118)
Q Consensus 69 -----------------~y-LTt~g~~~~~d~~mI~~~G~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 117 (118)
|| |||.|.++++|++||+++||++......++||+++++++|.++.+|+
T Consensus 313 ~~~~~~l~~GAN~~~~g~~~Ltt~g~~~~~d~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (379)
T PLN02389 313 AEQALCFLAGANSIFTGDKLLTTPNNDFDADQAMFKELGLIPKPPSFGEDEERASEAERCEEAVSSS 379 (379)
T ss_pred hHHHHHHHhCCCEEEECCcccCCCCCChHHHHHHHHHcCCCccccccccccccccccchHHHHhccC
Confidence 88 99999999999999999999999778889999999999999999885
No 2
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.95 E-value=6.8e-28 Score=197.44 Aligned_cols=94 Identities=51% Similarity=0.820 Sum_probs=90.4
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc------------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM------------ 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~------------ 68 (118)
||+|||||.+||+++++.|++|. +|+|||||+|+|+|||||++.+++++.+++|+||++|++||++.
T Consensus 199 gI~GlGEs~eDri~~l~~L~~l~-~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~ 277 (335)
T COG0502 199 GIVGLGETVEDRAELLLELANLP-TPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLP 277 (335)
T ss_pred eEecCCCCHHHHHHHHHHHHhCC-CCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccCCcccccH
Confidence 79999999999999999999996 49999999999999999999999999999999999999999987
Q ss_pred -----------------C-cccCCCCCHHHHHHHHHHcCCCCCCC
Q 041306 69 -----------------K-LLTTPNNNFVADQLMFKVLGLTPKAP 95 (118)
Q Consensus 69 -----------------~-yLTt~g~~~~~d~~mI~~~G~~~~~r 95 (118)
+ ||||.|...++|.+||+++|+++...
T Consensus 278 ~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~lgl~~e~~ 322 (335)
T COG0502 278 ELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKDLGLEPELL 322 (335)
T ss_pred HHHHHHHHhccceeeecceEeecCCCCchhHHHHHHHcCCCcccc
Confidence 5 99999999999999999999999864
No 3
>PRK08508 biotin synthase; Provisional
Probab=99.94 E-value=2.3e-26 Score=182.60 Aligned_cols=91 Identities=34% Similarity=0.515 Sum_probs=86.4
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc------------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM------------ 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~------------ 68 (118)
+|+|||||.+||++++..|++|| +++||+|+|+|++||||++ ++++++++||++|++|++||++.
T Consensus 157 ~I~GlGEt~ed~~~~l~~lr~L~--~~svpl~~~~p~~~t~~~~-~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~ 233 (279)
T PRK08508 157 GIFGLGESWEDRISFLKSLASLS--PHSTPINFFIPNPALPLKA-PTLSADEALEIVRLAKEALPNARLMVAGGREVVFG 233 (279)
T ss_pred eEEecCCCHHHHHHHHHHHHcCC--CCEEeeCCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCceeeecCChhhhch
Confidence 58999999999999999999997 8999999999999999985 56899999999999999999887
Q ss_pred -----------------CcccCCCCCHHHHHHHHHHcCCCCCC
Q 041306 69 -----------------KLLTTPNNNFVADQLMFKVLGLTPKA 94 (118)
Q Consensus 69 -----------------~yLTt~g~~~~~d~~mI~~~G~~~~~ 94 (118)
|||||.|.++++|++||+++||++..
T Consensus 234 ~~~~~~~~~g~n~~~~g~~lt~~g~~~~~d~~~~~~~~~~~~~ 276 (279)
T PRK08508 234 ERQYEIFEAGANAIVIGDYLTTKGEAPKKDIEKLKSLGFEIAT 276 (279)
T ss_pred hhHHHHHhcCCcceeecCcccCCCCChHHHHHHHHHcCCCcCc
Confidence 99999999999999999999999864
No 4
>PRK15108 biotin synthase; Provisional
Probab=99.93 E-value=1.1e-25 Score=183.93 Aligned_cols=96 Identities=55% Similarity=0.871 Sum_probs=89.9
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc------------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM------------ 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~------------ 68 (118)
+|||||||.+||++|+..|++||..+++||+|+|+|++||||++.+++++.+++|+||++|++||+..
T Consensus 191 ~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~ 270 (345)
T PRK15108 191 GIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNE 270 (345)
T ss_pred EEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhCh
Confidence 59999999999999999999997557899999999999999999988999999999999999999955
Q ss_pred -----------------C-cccCCCCCHHHHHHHHHHcCCCCCCCC
Q 041306 69 -----------------K-LLTTPNNNFVADQLMFKVLGLTPKAPS 96 (118)
Q Consensus 69 -----------------~-yLTt~g~~~~~d~~mI~~~G~~~~~r~ 96 (118)
+ ||||.|++.++|++||+++||+|++|+
T Consensus 271 ~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i~~~g~~~~~~~ 316 (345)
T PRK15108 271 QTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTA 316 (345)
T ss_pred hhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHHHHcCCCccccc
Confidence 5 589999999999999999999999873
No 5
>PRK06256 biotin synthase; Validated
Probab=99.90 E-value=2.8e-23 Score=166.99 Aligned_cols=93 Identities=37% Similarity=0.514 Sum_probs=89.0
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc------------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM------------ 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~------------ 68 (118)
+|+|+|||.+|+++++..|++++ ++++|+++|+|.|||||++.+++++.+++|++|++|+++|++.
T Consensus 207 ~I~GlgEt~ed~~~~~~~l~~l~--~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~ 284 (336)
T PRK06256 207 GIIGMGESLEDRVEHAFFLKELD--ADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLR 284 (336)
T ss_pred eEEeCCCCHHHHHHHHHHHHhCC--CCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhch
Confidence 48999999999999999999996 9999999999999999999999999999999999999999887
Q ss_pred ----------------CcccCCCCCHHHHHHHHHHcCCCCCCC
Q 041306 69 ----------------KLLTTPNNNFVADQLMFKVLGLTPKAP 95 (118)
Q Consensus 69 ----------------~yLTt~g~~~~~d~~mI~~~G~~~~~r 95 (118)
|||||.|.+.++|++||+++||++...
T Consensus 285 ~~~~~~~~g~~~~~~g~~lt~~g~~~~~d~~~~~~~g~~~~~~ 327 (336)
T PRK06256 285 SLQPLGLGGANSVIVGNYLTTVGQPATADLDMIEDLGFEIELD 327 (336)
T ss_pred hhHHHHhccCceeeECCcccCCCCChHHHHHHHHHCCCCcccC
Confidence 999999999999999999999999654
No 6
>PRK08444 hypothetical protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=171.71 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=85.2
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccC----CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc--------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQDQKPVEIWEMIRMIATARIVMPKAM-------- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~----~gTple~~~~~s~~e~lR~iAvaRl~lP~~~-------- 68 (118)
+|||||||++||++|++.||+|| ++++|||+|||+ +||||++.+++++.|+||++|++|++|||+.
T Consensus 209 ~l~G~gEt~edrv~hl~~Lr~Lq--~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i~ni~a~w~~ 286 (353)
T PRK08444 209 MLFGHIENREHRIDHMLRLRDLQ--DKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNIPHIKAYWAT 286 (353)
T ss_pred eEEecCCCHHHHHHHHHHHHHhc--cccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCCCcccccccc
Confidence 58999999999999999999997 999999999999 9999999889999999999999999999984
Q ss_pred ------------------------------CcccCCCCCHHHHHHHHHHcCCCCCCCC
Q 041306 69 ------------------------------KLLTTPNNNFVADQLMFKVLGLTPKAPS 96 (118)
Q Consensus 69 ------------------------------~yLTt~g~~~~~d~~mI~~~G~~~~~r~ 96 (118)
|.-+..+.+.++..++|+++|++|++|+
T Consensus 287 ~g~~~~q~~L~~Ga~D~ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~p~~R~ 344 (353)
T PRK08444 287 LTLNLALVAQEFGANDLDGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSGFIPVERD 344 (353)
T ss_pred CcHHHHHHHHhcCCccCccccccccchhhccCCCCCCCCHHHHHHHHHHcCCCeeeec
Confidence 2222234789999999999999999983
No 7
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=99.86 E-value=1.1e-22 Score=163.59 Aligned_cols=95 Identities=62% Similarity=1.014 Sum_probs=91.1
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCC--CCCCCHHHHHHHHHHHHHhCCCcc----------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD--QKPVEIWEMIRMIATARIVMPKAM---------- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~--~~~~s~~e~lR~iAvaRl~lP~~~---------- 68 (118)
||+|+||+.+||+.++..|..+..||+|||||.++|++||||++ ..++..+++||+||.+|++||++.
T Consensus 234 GIlGLGE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k~l~i~e~lR~IaTARIvMPKaiiRlaAGR~t~ 313 (380)
T KOG2900|consen 234 GILGLGESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSKKLQIDEILRTIATARIVMPKAIIRLAAGRYTM 313 (380)
T ss_pred ccccccccccceeeeeeeeccCCCCCcccccceEEecCCcccchhhcccccHHHHHHHHhhhheechHHHHHHhcccccc
Confidence 89999999999999999999999999999999999999999998 558999999999999999999876
Q ss_pred --------------------CcccCCCCCHHHHHHHHHHcCCCCCCC
Q 041306 69 --------------------KLLTTPNNNFVADQLMFKVLGLTPKAP 95 (118)
Q Consensus 69 --------------------~yLTt~g~~~~~d~~mI~~~G~~~~~r 95 (118)
++|||.+.++++|..|+..+|+.|.+.
T Consensus 314 sesEQalcFmAGaNsiFTGeKmLTTp~n~wD~D~~mf~~wGL~pm~~ 360 (380)
T KOG2900|consen 314 SESEQALCFMAGANSIFTGEKMLTTPCNGWDEDKAMFAKWGLQPMEA 360 (380)
T ss_pred chhHHHHHHHhCCccceechhhhcCCCCCcchHHHHHHHcCCCcCcc
Confidence 889999999999999999999999875
No 8
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.84 E-value=5.6e-21 Score=154.28 Aligned_cols=95 Identities=25% Similarity=0.395 Sum_probs=84.8
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCC---CCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc---------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM--------- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~---~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~--------- 68 (118)
+|||||||.+||++|+..||+||. ++.++++++|+|.+||||++.+++++.+++|+||++|++||+..
T Consensus 169 ~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~~~~I~~~~~l~ 248 (322)
T TIGR03550 169 ILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDISIQVPPNLN 248 (322)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCCCCeeecCCccC
Confidence 589999999999999999999972 25688889999999999999999999999999999999997542
Q ss_pred -----------------------CcccCCC--CCHHHHHHHHHHcCCCCCCC
Q 041306 69 -----------------------KLLTTPN--NNFVADQLMFKVLGLTPKAP 95 (118)
Q Consensus 69 -----------------------~yLTt~g--~~~~~d~~mI~~~G~~~~~r 95 (118)
+++++.+ .+.+++++||+++||+|++|
T Consensus 249 ~~~~~~~L~~Gand~~gt~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~p~~R 300 (322)
T TIGR03550 249 REDYRLLLDAGIDDWGGVSPVTPDHVNPEAPWPEIDELARATEEAGFTLKER 300 (322)
T ss_pred hHHHHHHHhcCCccccCcccCchhhcCCCCCCCCHHHHHHHHHHcCCCcccc
Confidence 5566555 68999999999999999998
No 9
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.84 E-value=6.8e-21 Score=153.77 Aligned_cols=94 Identities=18% Similarity=0.286 Sum_probs=85.5
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccC----CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc--------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQDQKPVEIWEMIRMIATARIVMPKAM-------- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~----~gTple~~~~~s~~e~lR~iAvaRl~lP~~~-------- 68 (118)
+|+|||||.+||++++..|++|+ +++++|..|+|. +||||++.+++++++++|+||++|++||+..
T Consensus 201 ~iiGlgEt~ed~~~~l~~l~~l~--~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~~~ 278 (340)
T TIGR03699 201 MMFGHVETLEDRIEHLERIRELQ--DKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDNIPNIQASWVT 278 (340)
T ss_pred eEeeCCCCHHHHHHHHHHHHHhc--hhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCCCCcccCCccc
Confidence 58999999999999999999996 888777777773 7999999888999999999999999999854
Q ss_pred ------------------------CcccCCCCCH----HHHHHHHHHcCCCCCCCC
Q 041306 69 ------------------------KLLTTPNNNF----VADQLMFKVLGLTPKAPS 96 (118)
Q Consensus 69 ------------------------~yLTt~g~~~----~~d~~mI~~~G~~~~~r~ 96 (118)
+|+|+.|.+. ++|++||+++||+|++|+
T Consensus 279 ~g~~~~~~~l~~Gan~~~g~~~~~~~~~~~g~~~~~~~~~~~~~i~~~g~~~~~r~ 334 (340)
T TIGR03699 279 QGKEVGQLALHFGANDFGSTMLEENVVAAAGATHRASREEIIRIIREAGFIPAQRD 334 (340)
T ss_pred cChHHHHHHHhcCCccCCCccccccccccCCCCCCCCHHHHHHHHHHcCCCeeeec
Confidence 8999999777 999999999999999984
No 10
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.83 E-value=1.9e-20 Score=153.96 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=83.3
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccC----CCCCCCCCC----CCCHHHHHHHHHHHHHhCCCcc----
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQDQK----PVEIWEMIRMIATARIVMPKAM---- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~----~gTple~~~----~~s~~e~lR~iAvaRl~lP~~~---- 68 (118)
+|||||||.+||++|++.|++|| +++++|..|||+ +||||++.. +.++.++||+||++|++||+..
T Consensus 221 ~i~G~gEt~edrv~~l~~lr~l~--~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~ 298 (371)
T PRK07360 221 MMYGHVETPEHRIDHLLILREIQ--QETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQ 298 (371)
T ss_pred EEeeCCCCHHHHHHHHHHHHHhc--hhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCee
Confidence 58999999999999999999997 999999999994 599998754 3588889999999999999932
Q ss_pred ----------------------------CcccC-CC------CCHHHHHHHHHHcCCCCCCCC
Q 041306 69 ----------------------------KLLTT-PN------NNFVADQLMFKVLGLTPKAPS 96 (118)
Q Consensus 69 ----------------------------~yLTt-~g------~~~~~d~~mI~~~G~~~~~r~ 96 (118)
+|+|+ .| .+.+++.+||+++||+|++|.
T Consensus 299 a~~~~lg~~~~~~~l~~Gan~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~i~~~G~~~~~r~ 361 (371)
T PRK07360 299 ASWVKLGLKLAQVALNCGANDLGGTLMEEHITKMAGASGGTYMSVEELQWMIKSIGRIPKQRD 361 (371)
T ss_pred ccceeeCHHHHHHHHhcCCccCcCcCcccceecccCCCCCCCCCHHHHHHHHHHcCCceeeec
Confidence 77787 55 699999999999999999873
No 11
>PRK05926 hypothetical protein; Provisional
Probab=99.82 E-value=5.2e-20 Score=152.23 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=82.9
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCccccccccc----CCCCCCCC----CCCCCHHHHHHHHHHHHHhCCCcc----
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA----VKGTPLQD----QKPVEIWEMIRMIATARIVMPKAM---- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP----~~gTple~----~~~~s~~e~lR~iAvaRl~lP~~~---- 68 (118)
+|+|||||++||++|++.||+|| ++++||..||| .++|||.. .+..++.++||++|++||+|||..
T Consensus 227 mi~G~gEt~edrv~~l~~Lr~Lq--~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa 304 (370)
T PRK05926 227 MLCYHRETPEDIVTHMSKLRALQ--DKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKA 304 (370)
T ss_pred eEEeCCCCHHHHHHHHHHHHhcC--CccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCccccc
Confidence 58999999999999999999997 99999999999 78999964 335789999999999999999866
Q ss_pred ----------------------------Ccc------cCCCCCHHHHHHHHHHcCCCCCCCCCc
Q 041306 69 ----------------------------KLL------TTPNNNFVADQLMFKVLGLTPKAPSFH 98 (118)
Q Consensus 69 ----------------------------~yL------Tt~g~~~~~d~~mI~~~G~~~~~r~~~ 98 (118)
+.. +..+.+.++..+||+++|+.|++|+..
T Consensus 305 ~w~~~G~~~~q~~L~~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~~p~~rd~~ 368 (370)
T PRK05926 305 LWNYLGIEVALHLLSCGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGRIPCLTNSK 368 (370)
T ss_pred CchhcCHHHHHHHHhCCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCCCceecCCC
Confidence 222 233468999999999999999998643
No 12
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.82 E-value=3.4e-20 Score=151.28 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=82.9
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccC----CCCCCCCC--CCCCHHHHHHHHHHHHHhCCCcc------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQDQ--KPVEIWEMIRMIATARIVMPKAM------ 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~----~gTple~~--~~~s~~e~lR~iAvaRl~lP~~~------ 68 (118)
+|+|||||++||++|+..|+++| +++++|+.|||+ +||||++. +++++++++|++|++|++||++.
T Consensus 208 ~i~GlgEt~edrv~~l~~Lr~l~--~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a~w 285 (351)
T TIGR03700 208 MLYGHIETPAHRVDHMLRLRELQ--DETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKAYW 285 (351)
T ss_pred EEeeCCCCHHHHHHHHHHHHHhh--HhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCcccccc
Confidence 48999999999999999999997 899999999998 69999987 78999999999999999999844
Q ss_pred --------------------------CcccC------CCCCHHHHHHHHHHcCCCCCCCC
Q 041306 69 --------------------------KLLTT------PNNNFVADQLMFKVLGLTPKAPS 96 (118)
Q Consensus 69 --------------------------~yLTt------~g~~~~~d~~mI~~~G~~~~~r~ 96 (118)
++... ...+.++..++|+++|++|++|.
T Consensus 286 ~~~~~~~~~~~L~~Gand~ggt~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~g~~p~~r~ 345 (351)
T TIGR03700 286 VMLGLKLAQVALAFGVNDLDGTVVEEKIGHDAGAKSPQALSKDELVRLIRDAGRVPVERD 345 (351)
T ss_pred cccCHHHHHHHHhcCCCCCCccCccceeeccccCCCCCCCCHHHHHHHHHHcCCCeeeec
Confidence 12222 23689999999999999999984
No 13
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.80 E-value=8.3e-20 Score=150.33 Aligned_cols=97 Identities=15% Similarity=0.241 Sum_probs=87.8
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCC----CCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc--------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPT----HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM-------- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~----~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~-------- 68 (118)
+|+||||+.+||++++..|++|++ .+.+||||.|.|++| |+++.+++++.+++|+||++|+++|++.
T Consensus 223 ~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~ 301 (371)
T PRK09240 223 ALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRES 301 (371)
T ss_pred EEecCCccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCC
Confidence 589999999999999999999972 124999999999999 9999999999999999999999999877
Q ss_pred ------------------------CcccC----------CCCCHHHHHHHHHHcCCCCCCCCCc
Q 041306 69 ------------------------KLLTT----------PNNNFVADQLMFKVLGLTPKAPSFH 98 (118)
Q Consensus 69 ------------------------~yLTt----------~g~~~~~d~~mI~~~G~~~~~r~~~ 98 (118)
||||+ .|++.++|++||+++||+|+..+++
T Consensus 302 ~~lrd~~~~~~~~~~~ag~~~~~G~y~~~~~~~~qf~~~~~r~~~~~~~~i~~~g~~~~~~~~~ 365 (371)
T PRK09240 302 PEFRDNLIPLGITKMSAGSSTQPGGYADDHKELEQFEISDDRSVEEVAAALRAKGLQPVWKDWD 365 (371)
T ss_pred HHHHHHHHhhcceeeccCccCCCCCcCCCCCCcCCccCCCCCCHHHHHHHHHHCCCeeccchhh
Confidence 99998 6999999999999999999754433
No 14
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.80 E-value=2.6e-19 Score=140.73 Aligned_cols=87 Identities=53% Similarity=0.778 Sum_probs=83.3
Q ss_pred eeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc-------------
Q 041306 2 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM------------- 68 (118)
Q Consensus 2 I~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~------------- 68 (118)
|+|+|||.+|+++++..+++++ ++++++++|+|.+||||++.++++.+++++++|++|+++|+..
T Consensus 179 i~Gl~et~~d~~~~~~~l~~l~--~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~ 256 (296)
T TIGR00433 179 IFGLGETVEDRIGLALALANLP--PESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRE 256 (296)
T ss_pred EEeCCCCHHHHHHHHHHHHhCC--CCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhh
Confidence 8999999999999999999996 9999999999999999999889999999999999999999854
Q ss_pred -----------------CcccCCCCCHH-HHHHHHHHcCC
Q 041306 69 -----------------KLLTTPNNNFV-ADQLMFKVLGL 90 (118)
Q Consensus 69 -----------------~yLTt~g~~~~-~d~~mI~~~G~ 90 (118)
|||||.|+..+ +|++||+++||
T Consensus 257 ~~~~~~l~~G~n~i~~g~~~~~~g~~~~~~~~~~~~~~~~ 296 (296)
T TIGR00433 257 LQQAMCFMAGANSIFVGDYLTTTGNPEEDKDKKLLAKLGL 296 (296)
T ss_pred hHHHHHHHhcCceEEEcCcccCCCCCCcHHHHHHHHHcCC
Confidence 99999999999 99999999997
No 15
>PRK08445 hypothetical protein; Provisional
Probab=99.79 E-value=2.6e-19 Score=146.69 Aligned_cols=94 Identities=18% Similarity=0.268 Sum_probs=79.3
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccc----cCCCCCCCCC----CCCCHHHHHHHHHHHHHhCCCcc----
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL----AVKGTPLQDQ----KPVEIWEMIRMIATARIVMPKAM---- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fi----P~~gTple~~----~~~s~~e~lR~iAvaRl~lP~~~---- 68 (118)
+|+|||||.+||++|+..||+|| ++++||+.|+ +.+||||++. +++++.++||++|++|++||+..
T Consensus 202 ~i~G~~Et~edr~~~l~~lreLq--~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a 279 (348)
T PRK08445 202 MMFGTVENDEEIIEHWERIRDLQ--DETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQS 279 (348)
T ss_pred EEecCCCCHHHHHHHHHHHHHHH--HHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccC
Confidence 58999999999999999999997 8887777776 3599999853 36899999999999999999943
Q ss_pred ----------------------------Cccc----CCCCCHHHHHHHHHHcCCCCCCCC
Q 041306 69 ----------------------------KLLT----TPNNNFVADQLMFKVLGLTPKAPS 96 (118)
Q Consensus 69 ----------------------------~yLT----t~g~~~~~d~~mI~~~G~~~~~r~ 96 (118)
+... +.+.+.++..+||+++||.|++|+
T Consensus 280 ~~~~~g~~~~~~~L~~Gand~~gt~~~e~i~~~ag~~~~~~~~~~~~~i~~~g~~p~~r~ 339 (348)
T PRK08445 280 SWVTQGSYIGQLALLFGANDLGSTMMEENVVKAAGASFRMNQAEMIELIKDIGEIPAKRN 339 (348)
T ss_pred CCcccCHHHHHHHHhcCCccCccccccccchhccCCCCCCCHHHHHHHHHHcCCCeeeec
Confidence 2222 224789999999999999999984
No 16
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.78 E-value=7.2e-19 Score=157.82 Aligned_cols=95 Identities=22% Similarity=0.270 Sum_probs=84.7
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCC---CCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc---------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM--------- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~---~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~--------- 68 (118)
+|||||||.+||++||+.||+||. +.+++++++|+|++||||++.++++++++||+||++|++||+..
T Consensus 238 ~L~GiGEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~~~~Iqa~~~l~ 317 (843)
T PRK09234 238 ILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVLGPKMRIQAPPNLV 317 (843)
T ss_pred EEEECCCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCceeeCccccC
Confidence 589999999999999999999974 57899999999999999999999999999999999999998655
Q ss_pred ------------------------Cccc--CCCCCHHHHHHHHHHcCCCCCCC
Q 041306 69 ------------------------KLLT--TPNNNFVADQLMFKVLGLTPKAP 95 (118)
Q Consensus 69 ------------------------~yLT--t~g~~~~~d~~mI~~~G~~~~~r 95 (118)
++.+ +...+.++..++|+++||.|++|
T Consensus 318 g~~~~~~~L~~GanD~GG~~~~~~d~~~p~~~~~~~~~l~~~~~~aG~~~~eR 370 (843)
T PRK09234 318 SGDECAALLGAGIDDWGGVSPLTPDHVNPERPWPQLDELAAVTAEAGFTLVER 370 (843)
T ss_pred CHHHHHHHHhcCCCcccchhhhHhhccCccCCCCCHHHHHHHHHHcCCCcccc
Confidence 2222 23357899999999999999998
No 17
>PRK05927 hypothetical protein; Provisional
Probab=99.77 E-value=1.2e-18 Score=143.20 Aligned_cols=94 Identities=19% Similarity=0.137 Sum_probs=80.2
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccC----CCCCCCCCC--CCCHHHHHHHHHHHHHhCCCcc------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQDQK--PVEIWEMIRMIATARIVMPKAM------ 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~----~gTple~~~--~~s~~e~lR~iAvaRl~lP~~~------ 68 (118)
+|||||||++||++|++.||+|| +++.+|..|||+ +||||++.. +++++++||++|++|++||++.
T Consensus 205 ~l~G~gEt~e~ri~~l~~Lr~lq--d~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~~i~~~w 282 (350)
T PRK05927 205 MMFGHVESPEDILLHLQTLRDAQ--DENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFDHIAASW 282 (350)
T ss_pred eEEeeCCCHHHHHHHHHHHHHhh--HhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCCcccCCc
Confidence 58999999999999999999997 778888888997 799998642 6999999999999999999876
Q ss_pred --------------------------CcccCC----CCCHHHHHHHHHHcCCCCCCCC
Q 041306 69 --------------------------KLLTTP----NNNFVADQLMFKVLGLTPKAPS 96 (118)
Q Consensus 69 --------------------------~yLTt~----g~~~~~d~~mI~~~G~~~~~r~ 96 (118)
++-... +.+.++..++|+++|++|++|.
T Consensus 283 ~~~G~~~~q~~L~~GanDlggt~~~e~v~~~ag~~~~~~~~~l~~~i~~~G~~~~~R~ 340 (350)
T PRK05927 283 FGEGKEEGAKGLHYGADDFGGTILDESVHKCTGWDLQSSEEEICAMILSEGFIPVERN 340 (350)
T ss_pred cccCHHHHHHHHhCCCccccCCCccceeeccCCCCCcCCHHHHHHHHHHcCCCeeeec
Confidence 111122 2468999999999999999983
No 18
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.76 E-value=2.2e-18 Score=138.05 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=81.7
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCccccccccc----CCCCC-CCCC--CCCCHHHHHHHHHHHHHhCCCcc-----
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA----VKGTP-LQDQ--KPVEIWEMIRMIATARIVMPKAM----- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP----~~gTp-le~~--~~~s~~e~lR~iAvaRl~lP~~~----- 68 (118)
+|+|||||.+||++++..|++|+ +++++|+.|+| .+||| |++. ++++++++||+||++|++||+..
T Consensus 165 ~iiG~~Et~ed~~~~l~~lr~l~--~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~ 242 (309)
T TIGR00423 165 MMFGHVENPEHRVEHLLRIRKIQ--EKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLNNIRNIQAS 242 (309)
T ss_pred EEecCCCCHHHHHHHHHHHHhhc--hhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcCCCccceec
Confidence 48999999999999999999996 89999999999 47999 8875 78999999999999999999755
Q ss_pred --------------------------Cccc-CC------CCCHHHHHHHHHHcCCCCCCCC
Q 041306 69 --------------------------KLLT-TP------NNNFVADQLMFKVLGLTPKAPS 96 (118)
Q Consensus 69 --------------------------~yLT-t~------g~~~~~d~~mI~~~G~~~~~r~ 96 (118)
.+.+ .+ .++.++..++|+++|++|++|.
T Consensus 243 ~~~l~~~~~~~~l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~~~~r~ 303 (309)
T TIGR00423 243 WVKLGLKLAQVALEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRVPAQRD 303 (309)
T ss_pred chhcCHHHHHHHHhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCCeeecC
Confidence 1122 11 4689999999999999999984
No 19
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.76 E-value=1.9e-18 Score=140.35 Aligned_cols=94 Identities=19% Similarity=0.144 Sum_probs=80.3
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCC----CCCCCCC----CCCCHHHHHHHHHHHHHhCCCc--c--
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK----GTPLQDQ----KPVEIWEMIRMIATARIVMPKA--M-- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~----gTple~~----~~~s~~e~lR~iAvaRl~lP~~--~-- 68 (118)
+|+|||||.+||++++..|++|+ +++++|..|+|++ ||||.+. ++++++++||+||++|++||+. .
T Consensus 199 ~i~G~~Et~ed~~~~l~~lr~l~--~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~ 276 (343)
T TIGR03551 199 IMYGHVETPEHWVDHLLILREIQ--EETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQ 276 (343)
T ss_pred EEEecCCCHHHHHHHHHHHHHhh--HHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCee
Confidence 58999999999999999999996 8998888888865 9999743 4679999999999999999996 2
Q ss_pred -----------------------Cccc------C------CCCCHHHHHHHHHHcCCCCCCCC
Q 041306 69 -----------------------KLLT------T------PNNNFVADQLMFKVLGLTPKAPS 96 (118)
Q Consensus 69 -----------------------~yLT------t------~g~~~~~d~~mI~~~G~~~~~r~ 96 (118)
|-++ . ...+.++.++||+++||+|++|.
T Consensus 277 a~~~~l~~~~~~~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g~~~~~r~ 339 (343)
T TIGR03551 277 ASWVKLGKKLAQVALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAGRIPKQRT 339 (343)
T ss_pred ccccccCHHHHHHHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcCCCeeecC
Confidence 1121 1 35789999999999999999984
No 20
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=99.74 E-value=2.2e-18 Score=117.91 Aligned_cols=63 Identities=41% Similarity=0.631 Sum_probs=52.1
Q ss_pred cccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc-----------------------------CcccCCC-CCHH
Q 041306 30 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM-----------------------------KLLTTPN-NNFV 79 (118)
Q Consensus 30 pin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~-----------------------------~yLTt~g-~~~~ 79 (118)
|||+|+|++|||+++..+++.++++|+||++|+++|++. ||||+.| .+++
T Consensus 1 pin~l~P~~Gtpl~~~~~l~~~e~lr~ia~~Rl~~P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~G~ylt~~g~~~~~ 80 (93)
T PF06968_consen 1 PINFLRPIPGTPLEDPPPLSDEEFLRIIAAFRLLLPEAGIRLAGGREALLRDLQPLTFMSGANSIMVGGYLTTSGNRSVD 80 (93)
T ss_dssp EEEE----TTSTTTTS----HHHHHHHHHHHHHHSTTSEEEEECCHHHCSCCHHHHHHCCT--EEE-CSBTSSSCTSHHH
T ss_pred CeeeEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcceEeecCccccCHHHHHHHHhcccceeEECCccccCCCCCHH
Confidence 799999999999999999999999999999999999977 9999999 9999
Q ss_pred HHHHHHHHcCCCC
Q 041306 80 ADQLMFKVLGLTP 92 (118)
Q Consensus 80 ~d~~mI~~~G~~~ 92 (118)
+|++||+++||+|
T Consensus 81 ~d~~~i~~lG~~P 93 (93)
T PF06968_consen 81 EDIEMIEKLGLEP 93 (93)
T ss_dssp HHHHHHHHTT-ES
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999986
No 21
>PRK06267 hypothetical protein; Provisional
Probab=99.74 E-value=7e-18 Score=138.03 Aligned_cols=83 Identities=24% Similarity=0.337 Sum_probs=78.5
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc------------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM------------ 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~------------ 68 (118)
+|+|+|||.+|+.+++..|++++ ++++++++|+|.|||||++.+++++++++|+||++|++||++.
T Consensus 173 ~IiGlgEt~ed~~~~l~~l~~l~--~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP~~~I~~~~~~~~l~~ 250 (350)
T PRK06267 173 IILGLGETEDDIEKLLNLIEELD--LDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRLNFPKIKIITGTWVDKLTN 250 (350)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcC--CCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHHHCCCCCcchhhHhHhcch
Confidence 48999999999999999999996 9999999999999999999999999999999999999999877
Q ss_pred -------------------CcccCCCCCHHHHHHHH
Q 041306 69 -------------------KLLTTPNNNFVADQLMF 85 (118)
Q Consensus 69 -------------------~yLTt~g~~~~~d~~mI 85 (118)
+|||+.|+++++|+..-
T Consensus 251 ~~~~~~aGaN~i~~~p~~g~ylt~~g~~~~~~~~~~ 286 (350)
T PRK06267 251 IGPLIMSGSNVITKFPLFSMYGTKEGKRVENEIRWT 286 (350)
T ss_pred hhHHhhcCcceeeccchhccCcccCCCCHHHHHHHh
Confidence 89999999999998653
No 22
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.74 E-value=6.3e-18 Score=138.87 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=86.7
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCC----CCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc--------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPT----HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM-------- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~----~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~-------- 68 (118)
+|+||||+.+|++++++.|++|++ .+.+||||.|.|++| |++...++++.+++|+||++|+++|+..
T Consensus 222 ~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~ 300 (366)
T TIGR02351 222 ALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRES 300 (366)
T ss_pred EEEeCchhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCC
Confidence 589999999999999999999973 137999999999999 9999999999999999999999999987
Q ss_pred ------------------------CcccCCC----------CCHHHHHHHHHHcCCCCCC
Q 041306 69 ------------------------KLLTTPN----------NNFVADQLMFKVLGLTPKA 94 (118)
Q Consensus 69 ------------------------~yLTt~g----------~~~~~d~~mI~~~G~~~~~ 94 (118)
||||+.| +++++|++||+++||+|+-
T Consensus 301 ~~lrd~~~~~~~~~~~a~~~~~~G~y~~~~~~~~qf~~~d~r~~~~~~~~i~~~g~~~~~ 360 (366)
T TIGR02351 301 KKFRDNVIPLGITKMSAGSSTEPGGYSSEKKGLEQFEISDERSVAEVEEDLRSKGLQPVW 360 (366)
T ss_pred HHHHHHHHhhcceeeccCcccCCCCcCCCCCCcCcccCCCCCCHHHHHHHHHHCCCeecc
Confidence 9999999 9999999999999999964
No 23
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=99.71 E-value=2.2e-17 Score=113.02 Aligned_cols=63 Identities=44% Similarity=0.674 Sum_probs=59.8
Q ss_pred cccccccCCCCCCCCC-CCCCHHHHHHHHHHHHHhCCCcc-----------------------------C-cccCCCCCH
Q 041306 30 PINALLAVKGTPLQDQ-KPVEIWEMIRMIATARIVMPKAM-----------------------------K-LLTTPNNNF 78 (118)
Q Consensus 30 pin~fiP~~gTple~~-~~~s~~e~lR~iAvaRl~lP~~~-----------------------------~-yLTt~g~~~ 78 (118)
|||+|+|++||||++. +.++.++++|+||++|+++|++. + |||+.|...
T Consensus 1 pin~l~P~~gTp~~~~~~~~~~~~~l~~ia~~Rl~~P~~~I~~~~gr~~~~~~~~~~~l~aGan~~~~G~~~lt~~g~~~ 80 (94)
T smart00876 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFSAGANSIFGGDKYLTTSGPRS 80 (94)
T ss_pred CCCccccCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCcceEEecCCchhcchHHHHhhhccCceeeeCCccccCCCcCc
Confidence 7999999999999988 78999999999999999999987 5 999999999
Q ss_pred HHHHHHHHHcCCCC
Q 041306 79 VADQLMFKVLGLTP 92 (118)
Q Consensus 79 ~~d~~mI~~~G~~~ 92 (118)
.+|++||+++||++
T Consensus 81 ~~d~~~i~~~g~~~ 94 (94)
T smart00876 81 ADDVAMLEKLGLEP 94 (94)
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999999975
No 24
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.69 E-value=1.3e-16 Score=128.63 Aligned_cols=95 Identities=25% Similarity=0.407 Sum_probs=84.9
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCC---CCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc---------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM--------- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~---~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~--------- 68 (118)
.|+|+|||.+|+++++..|++|+. ++.+++++.|+|.+|||+++.+.++.+++++++|++|++||+..
T Consensus 173 ~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~l~~~i~i~~~~~~~ 252 (336)
T PRK06245 173 ILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPPDISIQVPPNLN 252 (336)
T ss_pred eeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHHCCCCceEecCCccc
Confidence 479999999999999999999973 25789999999999999988888899999999999999997532
Q ss_pred -----------------------CcccCC--CCCHHHHHHHHHHcCCCCCCC
Q 041306 69 -----------------------KLLTTP--NNNFVADQLMFKVLGLTPKAP 95 (118)
Q Consensus 69 -----------------------~yLTt~--g~~~~~d~~mI~~~G~~~~~r 95 (118)
+|+|+. +.+.+++++||+++|+.|++|
T Consensus 253 ~~~~~~~L~~Gand~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~r 304 (336)
T PRK06245 253 RDTGLLLLDAGADDLGGISPVTKDYVNPEYPWPDIEELREILEEAGWPLKER 304 (336)
T ss_pred hHHHHHHHhcCCccccCCccCCCceeCCCCCCCCHHHHHHHHHHcCCCcccc
Confidence 577765 579999999999999999998
No 25
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.66 E-value=4.6e-16 Score=139.88 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=79.0
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCccccccccc----CCCCCCC--C--CCCCCHHHHHHHHHHHHHhCCC-cc---
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA----VKGTPLQ--D--QKPVEIWEMIRMIATARIVMPK-AM--- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP----~~gTple--~--~~~~s~~e~lR~iAvaRl~lP~-~~--- 68 (118)
+|||||||.+||++|++.||+|| +++.+|..||| +++||+. + .+.+++.++||++|++||+||+ ..
T Consensus 686 mm~G~~Et~edrv~hl~~LreLq--~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iq 763 (843)
T PRK09234 686 MMYGHVDTPRHWVAHLRVLRDIQ--DRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQ 763 (843)
T ss_pred eEEcCCCCHHHHHHHHHHHHhcC--cccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCccccc
Confidence 58999999999999999999997 88888888888 6788873 3 3578999999999999999984 32
Q ss_pred -----------------------Cccc----------CC--CCCHHHHHHHHHHcCCCCCCC
Q 041306 69 -----------------------KLLT----------TP--NNNFVADQLMFKVLGLTPKAP 95 (118)
Q Consensus 69 -----------------------~yLT----------t~--g~~~~~d~~mI~~~G~~~~~r 95 (118)
|+|+ +. .++.++..++|+++|+.|++|
T Consensus 764 a~wv~lg~~~~q~~L~~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~p~~R 825 (843)
T PRK09234 764 TSWVKLGVEGTRAMLRGGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGRPARQR 825 (843)
T ss_pred chhhhcCHHHHHHHHhcCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCCCeeee
Confidence 3332 22 368999999999999999998
No 26
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.55 E-value=2.1e-14 Score=122.32 Aligned_cols=93 Identities=17% Similarity=0.248 Sum_probs=81.9
Q ss_pred CeeecCCCHHHHHHHHHHHhcCC----CCCCcccccccccCCCCCCCCCC-CCCHHHHHHHHHHHHHhCCCcc-------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLP----THPESVPINALLAVKGTPLQDQK-PVEIWEMIRMIATARIVMPKAM------- 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~----~~~~svpin~fiP~~gTple~~~-~~s~~e~lR~iAvaRl~lP~~~------- 68 (118)
+|+||||+.+|+++++..++.|+ .+|++|+|+.|.|.+||||++.+ ++|.++++|+||++|+++|...
T Consensus 240 ~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE 319 (469)
T PRK09613 240 VLFGLYDYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRE 319 (469)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCC
Confidence 58999999999999999999993 34899999999999999998776 6899999999999999999875
Q ss_pred -------------------------CcccC------------CCCCHHHHHHHHHHcCCCCC
Q 041306 69 -------------------------KLLTT------------PNNNFVADQLMFKVLGLTPK 93 (118)
Q Consensus 69 -------------------------~yLTt------------~g~~~~~d~~mI~~~G~~~~ 93 (118)
+|-.. ..++.++.+++|.+.|+.|+
T Consensus 320 ~~~~r~~~~~~gvt~~sags~t~~ggy~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~~p~ 381 (469)
T PRK09613 320 SAELRREVLELGVSQISAGSRTGVGGYSEEEEEEEKAQFELGDHRSLDEVIRELCEMGYIPS 381 (469)
T ss_pred CHHHHHHHHhhcceeecccccCCCCCcCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCCeEE
Confidence 55432 22699999999999999996
No 27
>PRK07094 biotin synthase; Provisional
Probab=99.53 E-value=4.9e-14 Score=112.71 Aligned_cols=66 Identities=26% Similarity=0.398 Sum_probs=62.8
Q ss_pred Ceeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc
Q 041306 1 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM 68 (118)
Q Consensus 1 gI~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~ 68 (118)
.|+|+ |||.+|+++++..+++++ +++++++.|+|.|||||.+.++++.++++|++|++|+++|+..
T Consensus 185 ~iiGlpget~ed~~~~l~~l~~l~--~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~ 251 (323)
T PRK07094 185 FMVGLPGQTLEDLADDILFLKELD--LDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDAN 251 (323)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCC--CCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCC
Confidence 38999 999999999999999996 9999999999999999999998999999999999999999855
No 28
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.46 E-value=2.2e-13 Score=113.25 Aligned_cols=95 Identities=20% Similarity=0.269 Sum_probs=77.9
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccC-----CCC-CCCCCCCCCHHHHHHHHHHHHHhCCCcc------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV-----KGT-PLQDQKPVEIWEMIRMIATARIVMPKAM------ 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~-----~gT-ple~~~~~s~~e~lR~iAvaRl~lP~~~------ 68 (118)
+++|+|||.+||++||..||+|| .++.+|+.|||. .++ ++...++.++.++|++||++|++|++..
T Consensus 219 ml~Gh~E~~ed~~~hl~~ir~lQ--~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~~i~~~~a~ 296 (370)
T COG1060 219 MLLGHVETREDRIDHLEHIRDLQ--DETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQAS 296 (370)
T ss_pred eEEEecCCHHHHHHHHHHHHHHH--HHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccCccccccCc
Confidence 57999999999999999999998 677777777773 444 6777778899999999999999999443
Q ss_pred ---------------------------Cccc------CCCCCHHHHHHHHHHcCCCCCCCCC
Q 041306 69 ---------------------------KLLT------TPNNNFVADQLMFKVLGLTPKAPSF 97 (118)
Q Consensus 69 ---------------------------~yLT------t~g~~~~~d~~mI~~~G~~~~~r~~ 97 (118)
+... ..+++.++..++|+++||.|+.|+.
T Consensus 297 w~~~g~~~~~~~l~~GanD~ggt~~~E~v~~~a~~~~~~~~~~eel~~~i~~aG~~p~~Rdt 358 (370)
T COG1060 297 WLRDGVILAQAALLSGANDLGGTGYEEKVNPAAGAFSGDWRSVEELAALIKEAGRIPVERDT 358 (370)
T ss_pred ccccchHHHHHHHHhCcccCcCCCcccccccccccccCCCCCHHHHHHHHHHcCCCeeeecc
Confidence 1122 2247899999999999999999843
No 29
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=98.36 E-value=6.9e-07 Score=72.66 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=51.4
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCccccccccc--CCCCCCCCCCCCCHHHHHHHHHHH
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA--VKGTPLQDQKPVEIWEMIRMIATA 60 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP--~~gTple~~~~~s~~e~lR~iAva 60 (118)
.|+|||||.+|+++++..|++++ ++.++|+.|.. .+++|+.....+...+.+|.+|+.
T Consensus 213 iIVGlGETeee~~etl~~Lrelg--~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~ 272 (302)
T TIGR00510 213 IMVGLGETNEEIKQTLKDLRDHG--VTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALE 272 (302)
T ss_pred EEEECCCCHHHHHHHHHHHHhcC--CCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHHH
Confidence 48999999999999999999996 99999987754 589999999888888899988764
No 30
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=98.35 E-value=1.1e-06 Score=70.73 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=66.3
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCC------CCCCHHHHHHHHHHHHHhCCCcc------
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMPKAM------ 68 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~------~~~s~~e~lR~iAvaRl~lP~~~------ 68 (118)
|+|+ |||.++..+.+..+.+++ ++.+.++.|.|.|||||... .+++.++++..++.+...+|...
T Consensus 184 I~GlPget~e~~~~t~~~l~~l~--~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i~Rl~ 261 (302)
T TIGR01212 184 ILGLPGEDREEMMETAKIVSLLD--VDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIHRIS 261 (302)
T ss_pred EECCCCCCHHHHHHHHHHHHhcC--CCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEEEEec
Confidence 8999 999999999999999996 99999999999999999764 56889998988888877776532
Q ss_pred ----CcccCCC---CCHHHHHHHHHH
Q 041306 69 ----KLLTTPN---NNFVADQLMFKV 87 (118)
Q Consensus 69 ----~yLTt~g---~~~~~d~~mI~~ 87 (118)
+++.-.| .+..+.++.|.+
T Consensus 262 ~~~~~~~~l~~~~~~~k~~~l~~i~~ 287 (302)
T TIGR01212 262 GDAPRETLIAPEWCKNKWEIMNKISE 287 (302)
T ss_pred CCCCccceEcccccccHHHHHHHHHH
Confidence 4444444 355555555543
No 31
>PTZ00413 lipoate synthase; Provisional
Probab=98.26 E-value=1.1e-06 Score=74.11 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=35.1
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccc-cccccCC-CCCCCCC
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPI-NALLAVK-GTPLQDQ 45 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpi-n~fiP~~-gTple~~ 45 (118)
+|+|||||.+|+++++..|++++ +++++| |.+.|.+ .-|....
T Consensus 301 iIVGLGET~eEvie~m~dLrelG--VDivtIGQYL~Ps~~h~~V~~y 345 (398)
T PTZ00413 301 IMLGLGETEEEVRQTLRDLRTAG--VSAVTLGQYLQPTKTRLKVSRY 345 (398)
T ss_pred eEecCCCCHHHHHHHHHHHHHcC--CcEEeeccccCCCcccCCceec
Confidence 69999999999999999999996 999999 6667743 3344333
No 32
>PRK12928 lipoyl synthase; Provisional
Probab=98.24 E-value=1.5e-06 Score=70.12 Aligned_cols=57 Identities=26% Similarity=0.387 Sum_probs=49.3
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCccccccccc--CCCCCCCCCCCCCHHHHHHHHHH
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA--VKGTPLQDQKPVEIWEMIRMIAT 59 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP--~~gTple~~~~~s~~e~lR~iAv 59 (118)
.|+|+|||.+|+++++..|++++ ++.++++.|.+ .++.|+...-.+...+.++.+|.
T Consensus 210 iIvG~GET~ed~~etl~~Lrel~--~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~ 268 (290)
T PRK12928 210 LMLGLGETEDEVIETLRDLRAVG--CDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIAR 268 (290)
T ss_pred EEEeCCCCHHHHHHHHHHHHhcC--CCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHH
Confidence 48999999999999999999997 99999988877 57888888776677777777766
No 33
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.01 E-value=1.3e-05 Score=66.22 Aligned_cols=63 Identities=29% Similarity=0.446 Sum_probs=56.3
Q ss_pred eeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc
Q 041306 2 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM 68 (118)
Q Consensus 2 I~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~ 68 (118)
|+|+|||+.|.++.+...++.+ --+-+.+|.|.+||.|++..+++.+ ..|-+++||+++.+..
T Consensus 194 iVglGesD~~~ve~~~~v~~~g---~~v~Lfaf~P~~gt~me~r~~~pve-~Yrk~q~a~yli~~G~ 256 (339)
T COG2516 194 IVGLGESDKDIVETIKRVRKRG---GIVSLFAFTPLKGTQMENRKPPPVE-RYRKIQVARYLIGNGE 256 (339)
T ss_pred EeccCCchHHHHHHHHHHHhcC---ceEEEEEecccccccccCCCCCcHH-HHHHHHHHHHHHhcCc
Confidence 7999999999999999999995 7899999999999999999986665 5577799999988765
No 34
>PRK05481 lipoyl synthase; Provisional
Probab=97.79 E-value=4e-05 Score=61.66 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=32.5
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCccccccccc
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 36 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP 36 (118)
.|+|+|||.+|+++++..|++++ ++.++++.|.|
T Consensus 202 ~IvGfGET~ed~~~tl~~lrel~--~d~v~if~Ys~ 235 (289)
T PRK05481 202 LMVGLGETDEEVLEVMDDLRAAG--VDILTIGQYLQ 235 (289)
T ss_pred eEEECCCCHHHHHHHHHHHHhcC--CCEEEEEccCC
Confidence 48999999999999999999996 99999999999
No 35
>PLN02428 lipoic acid synthase
Probab=97.67 E-value=5.7e-05 Score=62.84 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=29.9
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccc
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 35 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fi 35 (118)
.|+|||||.+|+++++..|++++ ++.++|..|+
T Consensus 253 ~MvGLGET~Edv~e~l~~Lrelg--vd~vtigqyL 285 (349)
T PLN02428 253 IMLGLGETDEEVVQTMEDLRAAG--VDVVTFGQYL 285 (349)
T ss_pred EEEecCCCHHHHHHHHHHHHHcC--CCEEeecccc
Confidence 48999999999999999999996 9999995554
No 36
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=97.66 E-value=0.00029 Score=56.44 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=64.5
Q ss_pred HHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc--CcccCCCCCHHHHHHHHHHcCCC
Q 041306 14 GLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM--KLLTTPNNNFVADQLMFKVLGLT 91 (118)
Q Consensus 14 e~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~--~yLTt~g~~~~~d~~mI~~~G~~ 91 (118)
+.+.-|.+. .++.+-++.|+|.+||.|++.++++++|.++.+.-||-.+||-. |-....|...-+.-+-...+|..
T Consensus 170 kaIdiL~~~--~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~pv~iGCmrP~Ge~rvk~d~~av~~gVd 247 (275)
T COG1856 170 KAIDILVNY--EPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPNPVSIGCMRPRGEWRVKLDKEAVLAGVD 247 (275)
T ss_pred HHHHHHhcC--CCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCCCeeEeecCcCchhHHHHHHHHHHcCCc
Confidence 334445555 48999999999999999999999999999999999999999922 66667777777777777888876
Q ss_pred CCC
Q 041306 92 PKA 94 (118)
Q Consensus 92 ~~~ 94 (118)
...
T Consensus 248 ~It 250 (275)
T COG1856 248 RIT 250 (275)
T ss_pred eee
Confidence 654
No 37
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=97.63 E-value=0.00017 Score=60.48 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=43.5
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIW 51 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~ 51 (118)
|+|+ |||.+|..+.+..+++++ ++.+.++.|.|.||||+...+..+..
T Consensus 291 IvG~PgET~ed~~~t~~~~~~~~--~~~i~~~~~~p~pGT~~~~~~~v~~~ 339 (420)
T TIGR01578 291 IVGFPTETDDDFEETMELLRKYR--PEKINITKFSPRPGTPAAKMKRIPTN 339 (420)
T ss_pred EEeCCCCCHHHHHHHHHHHHHhC--CCEEEEEEeeCCCCCcccCCCCCCHH
Confidence 8999 999999999999999995 89999999999999999887765544
No 38
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=97.62 E-value=0.00017 Score=59.95 Aligned_cols=55 Identities=27% Similarity=0.273 Sum_probs=46.5
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHHHHHHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMIA 58 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e~lR~iA 58 (118)
|+|+ |||.+|..+.+..+++++ ++.+.++.|.|.||||+...+ ..+....-+-+.
T Consensus 296 IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~ 352 (414)
T TIGR01579 296 IVGFPGESEEDFQETLRMVKEIE--FSHLHIFPYSARPGTPASTMKDKVPETIKKERVK 352 (414)
T ss_pred EEECCCCCHHHHHHHHHHHHhCC--CCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHH
Confidence 8999 999999999999999996 899999999999999998876 556655443333
No 39
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.47 E-value=0.00034 Score=58.83 Aligned_cols=49 Identities=27% Similarity=0.158 Sum_probs=43.1
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWE 52 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e 52 (118)
|+|+ |||.+|..+.+..+++++ ++.+.++.|.|.||||+...+ ..+..+
T Consensus 303 IvG~PgET~ed~~~tl~~l~~l~--~~~i~~f~~sp~pGT~~~~~~~~~~~~~ 353 (437)
T PRK14331 303 IVGFPTETEEDFEETLDVLKKVE--FEQVFSFKYSPRPGTPAAYMEGQEPDEV 353 (437)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--cceeeeeEecCCCCcchhhCCCCCCHHH
Confidence 7998 999999999999999996 888999999999999998876 445544
No 40
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.47 E-value=0.00036 Score=58.63 Aligned_cols=51 Identities=22% Similarity=0.188 Sum_probs=44.5
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMI 54 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e~l 54 (118)
|+|+ |||.++..+.+..+++++ ++.+.++.|.|.||||+...+ ..+....-
T Consensus 307 IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~ 359 (444)
T PRK14325 307 IVGFPGETDEDFEATMKLIEDVG--FDQSFSFIYSPRPGTPAADLPDDVPEEVKK 359 (444)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCeeeeeeccCCCCCchhhCCCCCCHHHHH
Confidence 7999 999999999999999996 899999999999999998876 55555433
No 41
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=97.43 E-value=0.00044 Score=57.77 Aligned_cols=49 Identities=29% Similarity=0.293 Sum_probs=43.5
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWE 52 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e 52 (118)
|+|+ |||.++..+.+..+++++ ++.+.++.|.|.||||+...+ ..+...
T Consensus 297 IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pgT~~~~~~~~v~~~~ 347 (429)
T TIGR00089 297 IVGFPGETEEDFEETLDLVEEVK--FDKLHSFIYSPRPGTPAADMKDQVPEEV 347 (429)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCEeeccccCCCCCCchhhCCCCCCHHH
Confidence 8999 999999999999999996 899999999999999999776 445444
No 42
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.34 E-value=0.00059 Score=57.64 Aligned_cols=49 Identities=20% Similarity=0.208 Sum_probs=42.8
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWE 52 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e 52 (118)
|+|+ |||.+|-.+.+..+++++ ++.+.++.|.|.||||+.... ..+...
T Consensus 313 IvGfPgET~edf~~tl~~l~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~ 363 (448)
T PRK14333 313 IVGFPGETEAQFENTLKLVEEIG--FDQLNTAAYSPRPGTPAALWDNQLSEEV 363 (448)
T ss_pred EEECCCCCHHHHHHHHHHHHHcC--CCEEeeeeeecCCCCchhhCCCCCCHHH
Confidence 8998 999999999999999996 899999999999999987764 444444
No 43
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=97.30 E-value=0.00078 Score=56.43 Aligned_cols=50 Identities=24% Similarity=0.161 Sum_probs=44.0
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEM 53 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e~ 53 (118)
|+|+ |||.++..+.+..+++++ ++.+-++.|.|.||||+...+ ..++.+.
T Consensus 293 I~G~PgET~e~~~~t~~fl~~~~--~~~~~~~~~sp~pGT~~~~~~~~i~~~~~ 344 (430)
T TIGR01125 293 IVGFPGETEEDFQELLDFVEEGQ--FDRLGAFTYSPEEGTDAFALPDQVPEEVK 344 (430)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCCccccCCCCCCHHHH
Confidence 7999 999999999999999995 899999999999999997765 4665544
No 44
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.30 E-value=0.00067 Score=57.10 Aligned_cols=48 Identities=29% Similarity=0.277 Sum_probs=42.4
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIW 51 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~ 51 (118)
|+|+ |||.+|..+.+..+++++ ++.+.++.|.|.||||+...+ .++.+
T Consensus 305 IvG~PgET~ed~~~tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~ 354 (439)
T PRK14328 305 IVGFPGETEEDFEETLDLVKEVR--YDSAFTFIYSKRKGTPAAKMEDQVPED 354 (439)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCcccceEecCCCCChhhhCCCCCCHH
Confidence 8998 999999999999999995 899999999999999998765 44443
No 45
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.29 E-value=0.00073 Score=57.32 Aligned_cols=49 Identities=27% Similarity=0.263 Sum_probs=43.8
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWE 52 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e 52 (118)
|+|+ |||.+|.-+.+..+++++ ++.+.++.|.|.||||+.+.+ .++...
T Consensus 316 IvGfPgET~edf~~Tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~ 366 (455)
T PRK14335 316 LIGFPGETEEDFEQTLDLMREVE--FDSAFMYHYNPREGTPAYDFPDRIPDEV 366 (455)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEEecCCCCCchhhCCCCCCHHH
Confidence 8998 999999999999999996 899999999999999998876 455544
No 46
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=97.27 E-value=0.00083 Score=56.54 Aligned_cols=49 Identities=29% Similarity=0.255 Sum_probs=42.9
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWE 52 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e 52 (118)
|+|+ |||.+|..+.+..+++++ ++.+.++.|.|.||||+.+.+ ..+...
T Consensus 305 IvG~PgEt~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~ 355 (438)
T TIGR01574 305 IVGFPGETEEDFEETLDLLREVE--FDSAFSFIYSPRPGTPAADMPDQIPEEI 355 (438)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcC--CCeeeeEEecCCCCCchhhCCCCCCHHH
Confidence 8999 999999999999999995 889999999999999999876 334443
No 47
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.24 E-value=0.00096 Score=56.06 Aligned_cols=49 Identities=20% Similarity=0.142 Sum_probs=42.5
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWE 52 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e 52 (118)
|+|+ |||.+|..+.+..+++++ ++.+.++.|.|.||||+.+.+ ..+...
T Consensus 288 IvGfPgETeedf~~Tl~fl~~l~--~~~~~~f~~sp~pGT~a~~~~~~v~~~~ 338 (420)
T PRK14339 288 IVGFPGESDKDFEDTMDVLEKVR--FEQIFSFKYSPRPLTEAAAWKNQVDEEV 338 (420)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCEEeeEecCCCCCCchhhCCCCCCHHH
Confidence 8999 999999999999999995 788899999999999988765 455543
No 48
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=97.24 E-value=0.00029 Score=50.52 Aligned_cols=52 Identities=38% Similarity=0.472 Sum_probs=43.1
Q ss_pred eeecC-CCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC----CCCHHHHHH
Q 041306 2 IIGLG-EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK----PVEIWEMIR 55 (118)
Q Consensus 2 I~GlG-ET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~----~~s~~e~lR 55 (118)
|+|++ ++.++..+.+..+++++ ++.+.++.|+|.+|||+...+ +++.+++++
T Consensus 158 ~~g~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~t~~~~~~~~~~~~~~~~~~~ 214 (216)
T smart00729 158 IVGLPGETEEDFEETLKLLKELG--PDRVSIFPLSPRPGTPLAKLYKRLKPPDKEERLE 214 (216)
T ss_pred EecCCCCCHHHHHHHHHHHHHcC--CCeEEeeeeeeCCCChHHHhcccCCCCChhhhhh
Confidence 57885 99999999999999996 999999999999999998765 345554443
No 49
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=97.16 E-value=0.0013 Score=55.66 Aligned_cols=53 Identities=28% Similarity=0.231 Sum_probs=44.9
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHHHHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRM 56 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e~lR~ 56 (118)
|+|+ |||.++.-+.+..+++++ .+.+.++.|.|.||||....+ .+++.+..+-
T Consensus 304 IvGfPgET~edf~~tl~fi~e~~--~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r 358 (440)
T PRK14862 304 IVGFPGETEEDFQMLLDFLKEAQ--LDRVGCFKYSPVEGATANDLPDQVPEEVKEER 358 (440)
T ss_pred EEECCCCCHHHHHHHHHHHHHcC--CCeeeeEeecCCCCCchhhCCCCCCHHHHHHH
Confidence 8998 999999999999999995 899999999999999986544 5666654443
No 50
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.15 E-value=0.0014 Score=55.35 Aligned_cols=49 Identities=27% Similarity=0.152 Sum_probs=43.3
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWE 52 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e 52 (118)
|+|+ |||.+|..+.+..+++++ ++.+-++.|.|.||||....+ ..+...
T Consensus 307 IvG~PgET~ed~~~tl~~l~~~~--~~~~~~f~ysp~pgT~a~~~~~~v~~~v 357 (446)
T PRK14337 307 IVGFPGETEEDFEQTLEAMRTVG--FASSFSFCYSDRPGTRAEMLPGKVPEEV 357 (446)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCeeEEEecCCCCCCccccCCCCCCHHH
Confidence 8999 999999999999999996 899999999999999998876 355544
No 51
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.13 E-value=0.0011 Score=55.90 Aligned_cols=50 Identities=24% Similarity=0.194 Sum_probs=43.2
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEM 53 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e~ 53 (118)
|+|+ |||.+|..+.+..+++++ ++.+.++.|.|.||||+.... ..++++.
T Consensus 295 IvG~PgEt~ed~~~tl~~i~~l~--~~~i~~f~ysp~pGT~~~~~~~~v~~~~~ 346 (440)
T PRK14334 295 IVGFPGETEEDFQETLSLYDEVG--YDSAYMFIYSPRPGTPSYKHFQDLPREVK 346 (440)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCEeeeeEeeCCCCChhHhccCCCCHHHH
Confidence 7899 999999999999999996 999999999999999996643 4555544
No 52
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.10 E-value=0.00093 Score=56.11 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=39.2
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 44 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~ 44 (118)
|+|+ |||.++..+.+..+++++ ++.+.++.|.|.||||+.+
T Consensus 298 IvGfPgET~edf~~tl~fi~~~~--~~~~~~~~~sp~pGT~~~~ 339 (434)
T PRK14330 298 IVGFPTETEEDFMETVDLVEKAQ--FERLNLAIYSPREGTVAWK 339 (434)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCChhhh
Confidence 8999 999999999999999996 9999999999999999977
No 53
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=97.09 E-value=0.00094 Score=55.72 Aligned_cols=64 Identities=23% Similarity=0.219 Sum_probs=55.5
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCC------CCCCHHHHHHHHHHHHHhCCCc
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMPKA 67 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~------~~~s~~e~lR~iAvaRl~lP~~ 67 (118)
|+|+ |||.++..+.+..+.+++ |+.|.+..|+|.|||||... ..++.++..++...++-+|...
T Consensus 173 I~GlPgqt~e~~~~tl~~~~~l~--p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~ 243 (400)
T PRK07379 173 ISGLPHQTLEDWQASLEAAIALN--PTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQA 243 (400)
T ss_pred ecCCCCCCHHHHHHHHHHHHcCC--CCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 8999 999999999999999995 99999999999999998643 2467788888888888888643
No 54
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.06 E-value=0.00097 Score=56.82 Aligned_cols=49 Identities=20% Similarity=0.102 Sum_probs=42.2
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCC-CC-CCCHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-QK-PVEIWE 52 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~-~~-~~s~~e 52 (118)
|+|+ |||.+|..+.+..+++++ ++.+.++.|.|.||||+.. .+ .++.+.
T Consensus 331 IvGfPgET~edf~~tl~~i~~l~--~~~~~v~~~sp~pGT~~~~~~~~~v~~~~ 382 (467)
T PRK14329 331 IAGFPTETEEDHQDTLSLMEEVG--YDFAFMFKYSERPGTYAARKLEDDVPEEV 382 (467)
T ss_pred EEeCCCCCHHHHHHHHHHHHhhC--CCeEeeeEecCCCCChhhhhCCCCCCHHH
Confidence 8998 999999999999999995 8999999999999999985 43 344443
No 55
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=97.04 E-value=0.0012 Score=53.95 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=53.6
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC--CCCHHHHHHHHHHHHHhCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK--PVEIWEMIRMIATARIVMPK 66 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~--~~s~~e~lR~iAvaRl~lP~ 66 (118)
|+|+ |||.++..+.+..+.+++ ++.+.+..|+|.+|||+.... .++.++..++...++-+|..
T Consensus 158 i~GlPgqt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 223 (360)
T TIGR00539 158 MYGLPLQTLNSLKEELKLAKELP--INHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEG 223 (360)
T ss_pred cCCCCCCCHHHHHHHHHHHHccC--CCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHH
Confidence 7899 999999999999999996 999999999999999997643 35677777887777777643
No 56
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.02 E-value=0.0019 Score=54.89 Aligned_cols=43 Identities=28% Similarity=0.311 Sum_probs=40.0
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 46 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~ 46 (118)
|+|+ |||.+|..+.+..+++++ ++.+-++.|.|.||||+...+
T Consensus 313 IvG~PgET~ed~~~ti~~l~~l~--~~~v~i~~ysp~pGT~~~~~~ 356 (459)
T PRK14338 313 IVGHPGETEEQFQRTYDLLEEIR--FDKVHIAAYSPRPGTLAAEME 356 (459)
T ss_pred EEECCCCCHHHHHHHHHHHHHcC--CCEeEEEecCCCCCChhhhCc
Confidence 7899 999999999999999996 899999999999999998765
No 57
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.00 E-value=0.0019 Score=54.83 Aligned_cols=47 Identities=26% Similarity=0.220 Sum_probs=41.6
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCC-CC-CCCH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-QK-PVEI 50 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~-~~-~~s~ 50 (118)
|+|+ |||.+|..+.+..+++++ ++.+.++.|.|.||||+.. .+ ..+.
T Consensus 306 IvGfPgET~edf~~tl~~~~~~~--~~~~~~f~~sp~pGT~~~~~~~~~v~~ 355 (445)
T PRK14340 306 IAGFCGETEEDHRATLSLMEEVR--FDSAFMFYYSVRPGTLAARTLPDDVPE 355 (445)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCEEeeEEecCCCCChhhhhCCCCCCH
Confidence 8999 999999999999999996 8999999999999999984 43 4553
No 58
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=96.98 E-value=0.0016 Score=56.15 Aligned_cols=63 Identities=29% Similarity=0.404 Sum_probs=55.0
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCC----CCCCHHHHHHHHHHHHHhCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ----KPVEIWEMIRMIATARIVMPK 66 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~----~~~s~~e~lR~iAvaRl~lP~ 66 (118)
|+|+ |||.++..+.+..+.+|+ |+.+.++.+.|.+||+|... ..++.++..++...++-.+..
T Consensus 327 I~GLPgEt~ed~~~tl~~l~~L~--pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~ 394 (488)
T PRK08207 327 IIGLPGEGLEEVKHTLEEIEKLN--PESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKE 394 (488)
T ss_pred EeCCCCCCHHHHHHHHHHHHhcC--cCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 7999 999999999999999995 99999999999999999642 346778888898888887753
No 59
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=96.97 E-value=0.00097 Score=57.79 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=41.7
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEI 50 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~ 50 (118)
|+|+ |||.+|..+.+..+++++ ++.+.++.|.|.||||+...+ ..+.
T Consensus 370 IvGfPgET~edf~~Tl~~v~~l~--~d~~~~f~ysprpGT~a~~~~~~vp~ 418 (509)
T PRK14327 370 IVGFPNETDEQFEETLSLYREVG--FDHAYTFIYSPREGTPAAKMKDNVPM 418 (509)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcC--CCeEEEeeeeCCCCCchHhCcCCCCH
Confidence 7999 999999999999999996 899999999999999998765 3444
No 60
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=96.95 E-value=0.0018 Score=53.07 Aligned_cols=63 Identities=24% Similarity=0.301 Sum_probs=53.3
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 66 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~------~~~~s~~e~lR~iAvaRl~lP~ 66 (118)
|+|+ |||.++..+.+..+.+++ ++.+.+..|.|.||||+.. ...++.++..++...++-+|..
T Consensus 157 i~GlPgqt~e~~~~~l~~~~~l~--~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 226 (374)
T PRK05799 157 MFGLPNQTLEDWKETLEKVVELN--PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKE 226 (374)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcC--CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 7899 999999999999999996 9999999999999999853 2345677778888888777754
No 61
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=96.85 E-value=0.0031 Score=52.96 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=41.7
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCC-CC-CCCHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-QK-PVEIW 51 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~-~~-~~s~~ 51 (118)
|+|+ |||.++-.+.+..+++++ ++.+.++.|.|.||||+.. .+ ..+..
T Consensus 282 IvGfPGET~edf~~tl~fi~~~~--~~~~~v~~ysp~pGT~a~~~~~~~v~~~ 332 (418)
T PRK14336 282 IVGFPSETEEQFNQSYKLMADIG--YDAIHVAAYSPRPQTVAARDMADDVPVI 332 (418)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCEEEeeecCCCCCChhHhhCccCCCHH
Confidence 8998 999999999999999995 8999999999999999974 43 45443
No 62
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=96.82 E-value=0.00093 Score=56.46 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=37.6
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 43 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple 43 (118)
|+|+ |||.++..+.+..+.+++ ++.+.++.|+|.|||||.
T Consensus 344 IiGlPget~e~~~~ti~~~~~l~--~~~~~~~~l~P~PGT~l~ 384 (472)
T TIGR03471 344 ILGLPGETRETIRKTIDFAKELN--PHTIQVSLAAPYPGTELY 384 (472)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcC--CCceeeeecccCCCcHHH
Confidence 7899 999999999999999995 899999999999999984
No 63
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=96.80 E-value=0.003 Score=54.43 Aligned_cols=47 Identities=26% Similarity=0.281 Sum_probs=41.6
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEI 50 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~ 50 (118)
|+|+ |||.+|..+.+..+++++ ++.+.++.|.|.||||+.... ..+.
T Consensus 315 IvGfPgET~edf~~Tl~~i~~~~--~~~~~~f~~sp~pGT~~~~~~~~v~~ 363 (502)
T PRK14326 315 IVGFPGETEEDFQATLDVVREAR--FSSAFTFQYSKRPGTPAAEMEGQLPK 363 (502)
T ss_pred EEECCCCCHHHHHHHHHHHHHcC--CCEEEEEeecCCCCChHHhCcCCCCH
Confidence 8999 999999999999999995 888899999999999998775 4443
No 64
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=96.80 E-value=0.0033 Score=53.44 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=42.3
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCC-CCC-CCCHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ-DQK-PVEIWE 52 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple-~~~-~~s~~e 52 (118)
|+|+ |||.+|..+.+..+++++ ++.+.++.|.|.||||.. ..+ ..+.++
T Consensus 309 IvGfPgET~edf~~tl~~v~~l~--~~~~~~f~ys~~~GT~a~~~~~~~v~~~~ 360 (449)
T PRK14332 309 IVGFPNETEEEFEDTLAVVREVQ--FDMAFMFKYSEREGTMAKRKLPDNVPEEV 360 (449)
T ss_pred EeeCCCCCHHHHHHHHHHHHhCC--CCEEEEEEecCCCCChhHHhCcCCCCHHH
Confidence 8999 999999999999999996 899999999999999997 444 344443
No 65
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=96.77 E-value=0.0035 Score=51.46 Aligned_cols=62 Identities=18% Similarity=-0.001 Sum_probs=48.9
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCC------CCCCHHHHHHHHHHHHHhCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMP 65 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~------~~~s~~e~lR~iAvaRl~lP 65 (118)
|+|+ |||.++..+.+..+.+++ ++.+.++.|+|.||||+... +.++.+....+.+.++-.|-
T Consensus 158 i~GlPgqt~~~~~~~l~~~~~l~--~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 226 (377)
T PRK08599 158 IYALPGQTIEDFKESLAKALALD--IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEME 226 (377)
T ss_pred ecCCCCCCHHHHHHHHHHHHccC--CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 7899 999999999999999996 99999999999999998532 12455555556565555553
No 66
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=96.64 E-value=0.004 Score=51.38 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=51.0
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHHHHHHHHHHHHhCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMIATARIVMP 65 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e~lR~iAvaRl~lP 65 (118)
|+|+ |||.++..+.+..+.+++ |+.+.+..|.+.||||+.... .++.++..++...++-+|.
T Consensus 161 I~GlPgqt~e~~~~tl~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~ 224 (353)
T PRK05904 161 LYCLPILKLKDLDEVFNFILKHK--INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFN 224 (353)
T ss_pred eecCCCCCHHHHHHHHHHHHhcC--CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHH
Confidence 7898 999999999999999996 999999999999999997654 3455556666666666663
No 67
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=96.61 E-value=0.0017 Score=55.56 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=38.1
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 44 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~ 44 (118)
|+|+ |||.++..+.+..+.+++ ++.+.++.|+|.|||||-+
T Consensus 344 I~G~P~et~e~~~~t~~~~~~l~--~~~~~~~~~tP~PGT~l~~ 385 (497)
T TIGR02026 344 ITGFENETDETFEETYRQLLDWD--PDQANWLMYTPWPFTSLFG 385 (497)
T ss_pred EEECCCCCHHHHHHHHHHHHHcC--CCceEEEEecCCCCcHHHH
Confidence 7998 999999999999999996 8999999999999999843
No 68
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=96.50 E-value=0.0065 Score=51.12 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=54.9
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 66 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~ 66 (118)
|+|+ |+|.++..+.+..+.+++ ++.+-+..+.+.+||+|......+.++..++...++-.|..
T Consensus 199 I~GlP~qt~e~~~~~l~~~~~l~--~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~ 262 (430)
T PRK08208 199 IYGIPGQTHASWMESLDQALVYR--PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLE 262 (430)
T ss_pred ecCCCCCCHHHHHHHHHHHHhCC--CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHH
Confidence 7898 999999999999999996 99999999999999999876656777788888888777643
No 69
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=96.47 E-value=0.0063 Score=50.63 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=50.6
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC--CCCHHHHHHHHHHHHHhC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK--PVEIWEMIRMIATARIVM 64 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~--~~s~~e~lR~iAvaRl~l 64 (118)
|+|+ |+|.++..+.+..+.+++ |+.|.+..|.|.+||||.... .++.+....+...++-+|
T Consensus 179 I~GlPgqt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L 242 (394)
T PRK08898 179 MYALPGQTLDEALADVETALAFG--PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARL 242 (394)
T ss_pred EcCCCCCCHHHHHHHHHHHHhcC--CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHH
Confidence 8999 999999999999999996 999999999999999997653 245555666666666666
No 70
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=96.42 E-value=0.0052 Score=52.08 Aligned_cols=63 Identities=30% Similarity=0.303 Sum_probs=53.9
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCC------CCC-CHHHHHHHHHHHHHhCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPV-EIWEMIRMIATARIVMPK 66 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~------~~~-s~~e~lR~iAvaRl~lP~ 66 (118)
|+|+ |||.++..+.+..+.+++ ++.|.+..|++.|||||... +.+ +.++..++.+.++-.|..
T Consensus 221 I~GlPgqT~e~~~~~l~~~~~l~--~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~ 291 (449)
T PRK09058 221 IFGLPGQTPEIWQQDLAIVRDLG--LDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAK 291 (449)
T ss_pred EeeCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 7999 999999999999999996 99999999999999998642 233 778888888888887754
No 71
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=96.40 E-value=0.0063 Score=50.01 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=50.7
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCC------CCCCHHHHHHHHHHHHHhCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMP 65 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~------~~~s~~e~lR~iAvaRl~lP 65 (118)
|+|+ |||.++..+.+..+.+++ |+.+-+..+.+.+|||+... +.++.++..++...++-+|.
T Consensus 166 i~GlPgqt~~~~~~tl~~~~~l~--~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 234 (375)
T PRK05628 166 IYGTPGESDDDWRASLDAALEAG--VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLS 234 (375)
T ss_pred eccCCCCCHHHHHHHHHHHHhcC--CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 7898 999999999999999996 99999999999999998652 23455556677777776664
No 72
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=96.40 E-value=0.0052 Score=53.60 Aligned_cols=87 Identities=24% Similarity=0.338 Sum_probs=67.5
Q ss_pred eeec-CCCHHHHHHHHHHHhc---CCCCCCcccccccccCCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCcc---
Q 041306 2 IIGL-GEAEEDRVGLLHTLAT---LPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPKAM--- 68 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~---L~~~~~svpin~fiP~~gTple~------~~~~s~~e~lR~iAvaRl~lP~~~--- 68 (118)
|+|+ |||.++-.+.+..+-+ ++ |+.+-|..+.+.+||+|.. ..+++.++++.+++.+..++|...
T Consensus 263 M~GLPgqt~e~~~~t~~~l~~~~~l~--pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp~~i~v~ 340 (522)
T TIGR01211 263 MPGLPGSSFERDLEMFREIFEDPRFK--PDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKRMMPKWVRIQ 340 (522)
T ss_pred ecCCCCCCHHHHHHHHHHHHhccCCC--cCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcceEEE
Confidence 7899 9999999999988874 85 9999999999999999964 457899999999999999999432
Q ss_pred --------CcccCCCC----CHHHHHHHHHHcCCC
Q 041306 69 --------KLLTTPNN----NFVADQLMFKVLGLT 91 (118)
Q Consensus 69 --------~yLTt~g~----~~~~d~~mI~~~G~~ 91 (118)
+.|. .|. -.+...+.+++.|+.
T Consensus 341 R~qrdip~~~l~-ag~~k~~l~~li~~~l~~~G~~ 374 (522)
T TIGR01211 341 RIQRDIPAPLIV-AGVKKSNLRELVYRRMKEHGIT 374 (522)
T ss_pred eeccCCChhhcc-CccchHHHHHHHHHHHHHCCCe
Confidence 2222 232 234445566678877
No 73
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.0058 Score=52.37 Aligned_cols=43 Identities=26% Similarity=0.321 Sum_probs=40.2
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 46 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~ 46 (118)
|+|+ |||.||--+.+..+++.+ .+.+-++.|-|.||||-...+
T Consensus 303 IVGFPgETeedFe~tl~lv~e~~--fd~~~~F~YSpRpGTpAa~~~ 346 (437)
T COG0621 303 IVGFPGETEEDFEETLDLVEEVR--FDRLHVFKYSPRPGTPAALMP 346 (437)
T ss_pred EEECCCCCHHHHHHHHHHHHHhC--CCEEeeeecCCCCCCccccCC
Confidence 8999 999999999999999996 999999999999999987544
No 74
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=96.25 E-value=0.0088 Score=49.49 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=54.2
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCC------CCCCHHHHHHHHHHHHHhCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMPK 66 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~------~~~s~~e~lR~iAvaRl~lP~ 66 (118)
|+|+ |+|.++-.+.+..+.+++ |+.|.+..+.+.|||||... ..++.++..++...++-+|.+
T Consensus 161 i~GlPgqt~~~~~~~l~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~ 230 (380)
T PRK09057 161 IYARPGQTLAAWRAELKEALSLA--ADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAA 230 (380)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcC--CCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 7999 999999999999999995 99999999999999998642 236778888888888888854
No 75
>PRK05660 HemN family oxidoreductase; Provisional
Probab=96.20 E-value=0.013 Score=48.58 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=52.6
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC--CCCHHHHHHHHHHHHHhCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK--PVEIWEMIRMIATARIVMPK 66 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~--~~s~~e~lR~iAvaRl~lP~ 66 (118)
|+|+ |+|.++..+.+..+.+++ |+.+.+..|+|.+||++.... .++.++...+...+.-+|..
T Consensus 165 i~Glpgqt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (378)
T PRK05660 165 MHGLPDQSLEEALDDLRQAIALN--PPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTA 230 (378)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcC--CCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 6898 999999999999999996 999999999999999998643 34556667777777777654
No 76
>PRK00955 hypothetical protein; Provisional
Probab=96.14 E-value=0.0058 Score=54.45 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=36.8
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 43 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple 43 (118)
|+|+ |||.+|-.+.+..+++++ .+.+-++.|+|.|||+-.
T Consensus 485 IvGfPGETeEDf~et~eflkel~--~~~~qV~~fTP~PGT~At 525 (620)
T PRK00955 485 MSSHPGSTLEDAIELAEYTKDLG--YQPEQVQDFYPTPGTLST 525 (620)
T ss_pred EEECCCCCHHHHHHHHHHHHHcC--CCcceeeeeecCCCcchh
Confidence 7898 999999999999999996 889999999999998653
No 77
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=96.08 E-value=0.0077 Score=49.74 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=51.1
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCC------CCCCHHHHHHHHHHHHHhCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMPK 66 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~------~~~s~~e~lR~iAvaRl~lP~ 66 (118)
|+|+ |||.++..+.+..+.+++ |+.+.+..|+|.|||||... ..++.++...+...++-.|..
T Consensus 161 i~GlPgqt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (370)
T PRK06294 161 IYGLPTQSLSDFIVDLHQAITLP--ITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTS 230 (370)
T ss_pred ecCCCCCCHHHHHHHHHHHHccC--CCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 7898 999999999999999996 99999999999999998542 124566666777766666643
No 78
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=96.08 E-value=0.013 Score=41.18 Aligned_cols=56 Identities=38% Similarity=0.623 Sum_probs=42.7
Q ss_pred eeecCCC-HHHHHHHHHHHhcCCCCCCcccccccccCCCCCCC-CCCCCCHHHHHHHHH
Q 041306 2 IIGLGEA-EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ-DQKPVEIWEMIRMIA 58 (118)
Q Consensus 2 I~GlGET-~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple-~~~~~s~~e~lR~iA 58 (118)
|+|+++. .++..+.+..+.++. .+..+.++.|.|.+||||+ ..+..+.....|+++
T Consensus 146 i~g~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~p~~~t~~~~~~~~~~~~~~~~~~~ 203 (204)
T cd01335 146 LVGLGDEDEEDDLEELELLAEFR-SPDRVSLFRLLPEEGTPLELAAPVVPAEKLLRLIA 203 (204)
T ss_pred EEecCCChhHHHHHHHHHHHhhc-CcchhhhhhhcccCCCeeeeccccccHHHHHHHhh
Confidence 6888665 489999999999983 3789999999999999998 333445555555543
No 79
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=96.02 E-value=0.014 Score=48.02 Aligned_cols=63 Identities=25% Similarity=0.449 Sum_probs=56.1
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 66 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~------~~~~s~~e~lR~iAvaRl~lP~ 66 (118)
|+|| |||.++-++-+..+.+++ ++-|=|..+.=.+||||+. ...+|.+||+.+++-+=-++|.
T Consensus 189 I~GLPgE~~~~mleTak~v~~~~--v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le~lpp 258 (312)
T COG1242 189 INGLPGETRDEMLETAKIVAELG--VDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLEHLPP 258 (312)
T ss_pred eeCCCCCCHHHHHHHHHHHHhcC--CceEEEEEEEEecCChHHHHHHcCCceeccHHHHHHHHHHHHHhCCc
Confidence 8999 999999999999999995 9999999999999999964 4579999999999887777754
No 80
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=95.93 E-value=0.0098 Score=48.69 Aligned_cols=48 Identities=35% Similarity=0.511 Sum_probs=39.7
Q ss_pred eeec-CCCHHHHHHH---HHHHhcCCCCCC-cccccccccCCCCCCCCCCCCCHH
Q 041306 2 IIGL-GEAEEDRVGL---LHTLATLPTHPE-SVPINALLAVKGTPLQDQKPVEIW 51 (118)
Q Consensus 2 I~Gl-GET~edrve~---l~~Lr~L~~~~~-svpin~fiP~~gTple~~~~~s~~ 51 (118)
|+|+ |||.+|-... +..+++++ +. .+.+++|+|.||||+.........
T Consensus 358 i~G~pget~ed~~~t~~~~~~~~~~~--~~~~~~~~~~~p~p~t~~~~~~~~~~~ 410 (490)
T COG1032 358 IVGLPGETEEDVKETIELAKFIKKLG--PKLYVSPSPFVPLPGTPLQEMPKLENE 410 (490)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHHHhC--ccceEEEeeeeCCCCCchhhcccccch
Confidence 7899 8999988887 78888886 54 799999999999999887653333
No 81
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=95.81 E-value=0.021 Score=47.75 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=54.2
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 66 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~------~~~~s~~e~lR~iAvaRl~lP~ 66 (118)
|+|+ |+|.++-.+.+..+.+|+ |+.|.+..|.+.+||||.. ...++.++..++...++-+|..
T Consensus 168 I~GlPgqt~e~~~~~l~~~~~l~--p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 237 (390)
T PRK06582 168 IYARSGQTLKDWQEELKQAMQLA--TSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLES 237 (390)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcC--CCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 8999 999999999999999995 9999999999999999853 2346777888888888888754
No 82
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=95.55 E-value=0.023 Score=48.95 Aligned_cols=61 Identities=25% Similarity=0.257 Sum_probs=48.7
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHH-HHHHHHHHHHhC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWE-MIRMIATARIVM 64 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e-~lR~iAvaRl~l 64 (118)
|.|+ |||+||--+.+..+++.. --|+=||-|-|.||||-+.....+..+ --|+-++.+++-
T Consensus 346 IcgFPtETdeDFeeTmeLv~kYK--FPslfInQfyPRpGTPAAkmkki~a~~vkkRTk~ls~lF~ 408 (547)
T KOG4355|consen 346 ICGFPTETDEDFEETMELVRKYK--FPSLFINQFYPRPGTPAAKMKKIPAVEVKKRTKALSELFR 408 (547)
T ss_pred eecCCCCchHHHHHHHHHHHHcc--CchhhhhhcCCCCCChHHhhhcccHHHHHHHHHHHHHHHH
Confidence 7899 999999999999999995 779999999999999988777544444 345555555543
No 83
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=95.37 E-value=0.031 Score=45.91 Aligned_cols=33 Identities=24% Similarity=0.530 Sum_probs=29.0
Q ss_pred eeecCCCHHHHHHHHHHHhcCCCCCCccccccccc
Q 041306 2 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 36 (118)
Q Consensus 2 I~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP 36 (118)
|+|||||.++.++.|..||+.+ ++.+-|.-|.-
T Consensus 220 MlGLGEt~~Ev~e~m~DLr~~g--vdilTiGQYlq 252 (306)
T COG0320 220 MVGLGETDEEVIEVMDDLRSAG--VDILTIGQYLQ 252 (306)
T ss_pred eeecCCcHHHHHHHHHHHHHcC--CCEEEeccccC
Confidence 7999999999999999999996 88888766643
No 84
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=94.77 E-value=0.028 Score=46.01 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=39.0
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 45 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~ 45 (118)
|+|+ |||.++..+.+..+.+++ |+.+-+..|.|.||||+...
T Consensus 156 i~GlPgqt~~~~~~~l~~~~~l~--~~~is~y~L~~~~gT~l~~~ 198 (350)
T PRK08446 156 IYDTPLDNKKLLKEELKLAKELP--INHLSAYSLTIEENTPFFEK 198 (350)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcC--CCEEEeccceecCCChhHHh
Confidence 7898 999999999999999996 99999999999999999653
No 85
>PRK01254 hypothetical protein; Provisional
Probab=94.46 E-value=0.033 Score=50.37 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=35.9
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCC---CCCCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVK---GTPLQ 43 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~---gTple 43 (118)
|+|+ |||.+|-.+++..|++++ .+..-++.|+|.| ||.|-
T Consensus 564 IvGhPGeTeeDf~eLaefLkel~--f~~eQVQ~FTPtP~t~~T~MY 607 (707)
T PRK01254 564 ISAHPGTTDEDMVNLALWLKKNR--FRLDQVQNFYPSPMANATTMY 607 (707)
T ss_pred EEECCCCCHHHHHHHHHHHHHhC--CCcceeeeeecCCCcCchHHH
Confidence 8898 999999999999999996 7778888999999 77764
No 86
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=93.93 E-value=0.17 Score=43.03 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=50.5
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCC---CCCCCHHHHHHHHHHHHHhCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD---QKPVEIWEMIRMIATARIVMP 65 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~---~~~~s~~e~lR~iAvaRl~lP 65 (118)
|+|+ |||.++..+.+..+.+++ |+.|-+.++.+.+||+... ...++.++..++.++++-++.
T Consensus 205 I~GlPgqT~e~~~~~l~~~~~l~--p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~ 270 (433)
T PRK08629 205 IFNFPGQTDEVLQHDLDIAKRLD--PRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFG 270 (433)
T ss_pred EccCCCCCHHHHHHHHHHHHhCC--CCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHC
Confidence 7899 999999999999999996 9999999999999998532 223466666677777777774
No 87
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=92.13 E-value=0.69 Score=37.58 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=55.9
Q ss_pred eeec-C----CCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCcc--
Q 041306 2 IIGL-G----EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPKAM-- 68 (118)
Q Consensus 2 I~Gl-G----ET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~------~~~~s~~e~lR~iAvaRl~lP~~~-- 68 (118)
|+|+ | ||.++-.+.+..+..+ . +.+.++.+.|.+||+|+. ..++..|..+.++.-.+-..+.+.
T Consensus 176 i~G~P~~se~ea~ed~~~ti~~~~~l--~-~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lws~~e~l~e~~~~~~~~~~d 252 (313)
T TIGR01210 176 LFKPPFLSEKEAIADMISSIRKCIPV--T-DTVSINPTNVQKGTLVEFLWNRGLYRPPWLWSVAEVLKEAKKIGAEVLSD 252 (313)
T ss_pred EecCCCCChhhhHHHHHHHHHHHHhc--C-CcEEEECCEEeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHhhCCeEEec
Confidence 6776 3 5666677778888888 3 899999999999999853 335644555555544443332222
Q ss_pred --CcccCCC-----CCHHHHHHHHHHcCCCCC
Q 041306 69 --KLLTTPN-----NNFVADQLMFKVLGLTPK 93 (118)
Q Consensus 69 --~yLTt~g-----~~~~~d~~mI~~~G~~~~ 93 (118)
|+=+..| .--...+++|++-.++..
T Consensus 253 ~~g~~~~rg~~nc~~c~~~~~~~~~~~~~~q~ 284 (313)
T TIGR01210 253 PVGAGSDRGAHNCGKCDKRVKEAIRKFSLTQD 284 (313)
T ss_pred CCCCCCcCCCcCcchhhHHHHHHHHHhcccCC
Confidence 3333332 344566678888776643
No 88
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=92.04 E-value=0.51 Score=39.96 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=47.9
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCC-CCC----CCCCCCHHHHHHHHHHHHHhCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PLQ----DQKPVEIWEMIRMIATARIVMP 65 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gT-ple----~~~~~s~~e~lR~iAvaRl~lP 65 (118)
|+|+ |+|.++..+.+..+.+++ ++.+.+..|.+.+++ +.. ....++.++.+++...++-.+.
T Consensus 209 i~GlPgqt~e~~~~tl~~~~~l~--~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~ 276 (455)
T TIGR00538 209 IYGLPKQTKESFAKTLEKVAELN--PDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLT 276 (455)
T ss_pred EeeCCCCCHHHHHHHHHHHHhcC--CCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHH
Confidence 7898 999999999999999996 999999999776653 322 2234578888888777665553
No 89
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=90.38 E-value=0.96 Score=38.36 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=46.0
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCC-----CCCCCCCCHHHHHHHHHHHHHhCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP-----LQDQKPVEIWEMIRMIATARIVMP 65 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTp-----le~~~~~s~~e~lR~iAvaRl~lP 65 (118)
|+|+ |||.++..+.+..+.+++ |+.+.+..|...++.. .+....++.++.+++...+.-.|.
T Consensus 210 i~GlPgqt~e~~~~tl~~~~~l~--p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~ 277 (453)
T PRK13347 210 IYGLPHQTVESFRETLDKVIALS--PDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLL 277 (453)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHH
Confidence 7898 999999999999999996 9999988886443321 122334577777777776666654
No 90
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=90.04 E-value=0.9 Score=38.47 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=45.7
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCC-----CCCCCCCHHHHHHHHHHHHHhC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL-----QDQKPVEIWEMIRMIATARIVM 64 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTpl-----e~~~~~s~~e~lR~iAvaRl~l 64 (118)
|+|+ |||.++..+.+..+.+++ ++.+.+..|++.+++.. .....++.++..++...+.-.+
T Consensus 209 i~GlPgqt~e~~~~~l~~~~~l~--~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 275 (453)
T PRK09249 209 IYGLPKQTPESFARTLEKVLELR--PDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETL 275 (453)
T ss_pred EccCCCCCHHHHHHHHHHHHhcC--CCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHH
Confidence 7898 999999999999999996 99999999885544311 1122357777777776666555
No 91
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=87.43 E-value=1.2 Score=37.68 Aligned_cols=62 Identities=23% Similarity=0.248 Sum_probs=51.1
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-----CCCHHHHHHHHHHHHHhCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-----PVEIWEMIRMIATARIVMP 65 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-----~~s~~e~lR~iAvaRl~lP 65 (118)
|+|+ |+|.++-.+.+..+.+++ |+.+.+..|+=.|+|++.... .++.++.+.+...++-.|-
T Consensus 195 IyglP~QT~~~~~~~l~~a~~l~--pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~ 262 (416)
T COG0635 195 IYGLPGQTLESLKEDLEQALELG--PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLE 262 (416)
T ss_pred ecCCCCCCHHHHHHHHHHHHhCC--CCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHH
Confidence 8999 999999999999999996 999999999999999886533 3566666666666666554
No 92
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=82.00 E-value=1.9 Score=35.92 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=32.7
Q ss_pred eeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCC
Q 041306 2 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 42 (118)
Q Consensus 2 I~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTpl 42 (118)
++|+|||+|+....+..||+.+ ++-+-+.-|.+..---|
T Consensus 263 Mlglgetdeei~~tl~dLr~~~--vdv~t~gqym~ptkrhl 301 (360)
T KOG2672|consen 263 MLGLGETDEEIKQTLKDLRAAD--VDVVTFGQYMQPTKRHL 301 (360)
T ss_pred hhccCCCHHHHHHHHHHHHHcC--CcEEecccccCCccccc
Confidence 6899999999999999999996 88888888877543333
No 93
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=78.65 E-value=5.3 Score=33.73 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=42.5
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIA 58 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iA 58 (118)
|+|- |||+++++..-..|..-- ...-|-+..|.|++++|+.-...+++....|.-+
T Consensus 223 ivGA~~~tD~~Ilsrs~~ly~~y-~lkRVyySaf~Pv~~s~~lp~~~pplmRehRLYQ 279 (404)
T COG4277 223 IVGADGETDEDILSRSENLYGRY-SLKRVYYSAFSPVPSSPLLPDDKPPLMREHRLYQ 279 (404)
T ss_pred EEecCCCchHHHHHHHHHHhhcc-ceeEEEeecccccCCCCCCcccCCchhHHHHHHH
Confidence 7887 999999998887776543 4578999999999999987655555555555543
No 94
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=76.81 E-value=8.4 Score=32.97 Aligned_cols=61 Identities=16% Similarity=0.167 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcccccccccCC--CCCC--CCCCCCCHHHHHHHHHHHHHhCCCcc
Q 041306 6 GEAEEDRVGLLHTLATLPTHPESVPINALLAVK--GTPL--QDQKPVEIWEMIRMIATARIVMPKAM 68 (118)
Q Consensus 6 GET~edrve~l~~Lr~L~~~~~svpin~fiP~~--gTpl--e~~~~~s~~e~lR~iAvaRl~lP~~~ 68 (118)
|.++++..++...+++++ +..+-+.+|+|.+ |+++ .+.++++.++...+-..++-.+|...
T Consensus 199 GiND~~i~~l~~~~~~lg--~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~~~~~ 263 (442)
T TIGR01290 199 GINDEHLVEVSKQVKELG--AFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGTPQMR 263 (442)
T ss_pred CcCHHHHHHHHHHHHhCC--CcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhhhhhH
Confidence 567788999999999996 6667788888877 8875 45577899888888778888777654
No 95
>PRK08444 hypothetical protein; Provisional
Probab=75.21 E-value=15 Score=30.61 Aligned_cols=75 Identities=8% Similarity=0.068 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc---------Cccc-CCCCC
Q 041306 8 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM---------KLLT-TPNNN 77 (118)
Q Consensus 8 T~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~---------~yLT-t~g~~ 77 (118)
|.|+.++.+....+.+ ...+-|.. | ..+..+.+.+..++...|-.+|+.. .|+. ..|.+
T Consensus 81 s~eeI~~~a~~a~~~G--~~ei~iv~-----G----~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~ 149 (353)
T PRK08444 81 SHEEILEIVKNSVKRG--IKEVHIVS-----A----HNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKS 149 (353)
T ss_pred CHHHHHHHHHHHHHCC--CCEEEEec-----c----CCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCC
Confidence 7899999999999986 66666543 1 1222356778899999998888766 3444 67899
Q ss_pred HHHHHHHHHHcCCCCC
Q 041306 78 FVADQLMFKVLGLTPK 93 (118)
Q Consensus 78 ~~~d~~mI~~~G~~~~ 93 (118)
.++.+..++++|+...
T Consensus 150 ~~e~l~~LkeAGl~~~ 165 (353)
T PRK08444 150 YEEVLEDMLEYGVDSM 165 (353)
T ss_pred HHHHHHHHHHhCcccC
Confidence 9999999999999643
No 96
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=70.99 E-value=20 Score=27.04 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcccccccccC---------CCCCCCCCCCCCHHHHHHHHHHHH
Q 041306 6 GEAEEDRVGLLHTLATLPTHPESVPINALLAV---------KGTPLQDQKPVEIWEMIRMIATAR 61 (118)
Q Consensus 6 GET~edrve~l~~Lr~L~~~~~svpin~fiP~---------~gTple~~~~~s~~e~lR~iAvaR 61 (118)
-++.++..+++..+++++ .+..+.+.+|.|. ++.++.+.++++.++.-+.-+++|
T Consensus 170 ~~n~~ei~~l~~~~~~l~-~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (235)
T TIGR02493 170 TDSEEDIEALAEFVKTLP-NVERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFK 233 (235)
T ss_pred CCCHHHHHHHHHHHHhCC-CCceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHh
Confidence 356788888888888885 2466677777774 345677788888888877777765
No 97
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=70.84 E-value=19 Score=27.52 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=40.2
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCC---------CCCCCCCCCCHHHHHHHHHHHHHh
Q 041306 4 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG---------TPLQDQKPVEIWEMIRMIATARIV 63 (118)
Q Consensus 4 GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~g---------Tple~~~~~s~~e~lR~iAvaRl~ 63 (118)
|..++.+|.-+++..++++. .+..+-+++|+|.++ .++.+.++++.+++.+...+++-.
T Consensus 173 g~nd~~~ei~~l~~~l~~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~ 240 (246)
T PRK11145 173 GWTDDDDSAHRLGEFIKDMG-NIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQY 240 (246)
T ss_pred CCCCCHHHHHHHHHHHHhcC-CcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHc
Confidence 55667778888888888884 244555677777653 456677778888877766666543
No 98
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=70.17 E-value=12 Score=31.25 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHH
Q 041306 6 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIAT 59 (118)
Q Consensus 6 GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAv 59 (118)
|++.++..+++..+++++ -.+-+..|+|..|++.......+..++++.+.-
T Consensus 211 g~N~~Ei~~li~~a~~~g---i~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~ 261 (373)
T PLN02951 211 GFNDDEICDFVELTRDKP---INVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQ 261 (373)
T ss_pred CCCHHHHHHHHHHHHhCC---CeEEEEEcccCCCCccccccCCCHHHHHHHHHH
Confidence 899999999999999984 567778899999997765556788888887754
No 99
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=67.22 E-value=20 Score=29.13 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=48.6
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc
Q 041306 4 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA 67 (118)
Q Consensus 4 GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~ 67 (118)
|...+.++..+++..+.+++ +...-++.+.|.+||... ..+.++...++.-.|-.++..
T Consensus 239 gvNd~~~~l~~l~~~l~~~g--v~pyyl~~~~p~~g~~~f---~~~~~~~~~i~~~l~~~~~g~ 297 (321)
T TIGR03822 239 GVNDDPETLAALMRAFVECR--IKPYYLHHLDLAPGTAHF---RVTIEEGQALVRALRGRISGL 297 (321)
T ss_pred CCCCCHHHHHHHHHHHHhcC--CeeEEEEecCCCCCcccc---cCcHHHHHHHHHHHHHhCCCC
Confidence 77899999999999999996 788888999999998443 467888888888888777653
No 100
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=64.31 E-value=57 Score=26.69 Aligned_cols=75 Identities=19% Similarity=0.073 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc-Cccc---------CCCCC
Q 041306 8 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM-KLLT---------TPNNN 77 (118)
Q Consensus 8 T~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~-~yLT---------t~g~~ 77 (118)
+.++.++.+...++.+ ...+-+.. |... ..+.+.+++++...|-.+|+.. ..+| ..|.+
T Consensus 80 ~~eeI~~~a~~~~~~G--~~~v~l~~-----G~~p----~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~ 148 (351)
T TIGR03700 80 SLEEIVARVKEAYAPG--ATEVHIVG-----GLHP----NLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLP 148 (351)
T ss_pred CHHHHHHHHHHHHHCC--CcEEEEec-----CCCC----CCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCC
Confidence 7889999998888885 66666542 3222 2346778888888888889766 3222 46889
Q ss_pred HHHHHHHHHHcCCCCC
Q 041306 78 FVADQLMFKVLGLTPK 93 (118)
Q Consensus 78 ~~~d~~mI~~~G~~~~ 93 (118)
.++.++.++++|+.-.
T Consensus 149 ~~e~l~~LkeAGld~~ 164 (351)
T TIGR03700 149 TEEVLDELKEAGLDSM 164 (351)
T ss_pred HHHHHHHHHHcCCCcC
Confidence 9999999999999644
No 101
>PRK07360 FO synthase subunit 2; Reviewed
Probab=60.96 E-value=78 Score=26.20 Aligned_cols=75 Identities=9% Similarity=0.075 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCC-CHHHHHHHHHHHHHhCCCcc-Cccc---------CCCC
Q 041306 8 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPV-EIWEMIRMIATARIVMPKAM-KLLT---------TPNN 76 (118)
Q Consensus 8 T~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~-s~~e~lR~iAvaRl~lP~~~-~yLT---------t~g~ 76 (118)
|.++.++.+..+++.+ ...+-+. -|. .+.. ..+.+++++...|-.+|+.. ..+| +.|.
T Consensus 92 s~eeI~~~a~~a~~~G--~~~i~l~-----~G~----~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~ 160 (371)
T PRK07360 92 TIAEILEKAAEAVKRG--ATEVCIQ-----GGL----HPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGL 160 (371)
T ss_pred CHHHHHHHHHHHHhCC--CCEEEEc-----cCC----CCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCC
Confidence 7899999999999885 5555543 242 2222 36678888888887777654 2222 5688
Q ss_pred CHHHHHHHHHHcCCCCC
Q 041306 77 NFVADQLMFKVLGLTPK 93 (118)
Q Consensus 77 ~~~~d~~mI~~~G~~~~ 93 (118)
..++.++.++++|+.-.
T Consensus 161 ~~~e~l~~LkeAGld~~ 177 (371)
T PRK07360 161 SYEEVLKALKDAGLDSM 177 (371)
T ss_pred CHHHHHHHHHHcCCCcC
Confidence 88999999999999766
No 102
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=56.26 E-value=40 Score=28.03 Aligned_cols=54 Identities=11% Similarity=0.093 Sum_probs=37.5
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 041306 3 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 62 (118)
Q Consensus 3 ~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl 62 (118)
=|+.++.+|..+++..++.+.. .|-+-+|+|..|.++ .+++.+++.+...+++-
T Consensus 266 ~GvNDs~ed~~~l~~~l~~~~~---~VnLIpyn~~~g~~y---~~p~~e~v~~f~~~l~~ 319 (354)
T PRK14460 266 GGVNDSLEHARELVRLLSRTKC---KLNLIVYNPAEGLPY---SAPTEERILAFEKYLWS 319 (354)
T ss_pred CCCCCCHHHHHHHHHHHhcCCC---cEEEEcCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 3788999999999999999953 344455777788776 35567666655444443
No 103
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.09 E-value=96 Score=23.98 Aligned_cols=80 Identities=14% Similarity=0.002 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc-----------------
Q 041306 6 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM----------------- 68 (118)
Q Consensus 6 GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~----------------- 68 (118)
|.+.++-++.+..|.+-+.+.-.|++ +..+.++.|...|--+|+..
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~~iEitl-----------------~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~ 85 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVTL-----------------RTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIE 85 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEec-----------------CCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHH
Confidence 67888888888888887622333331 11236677777777889765
Q ss_pred ---CcccCCCCCHHHHHHHHHHcCCCCCCCCCcchhhh
Q 041306 69 ---KLLTTPNNNFVADQLMFKVLGLTPKAPSFHEDEAN 103 (118)
Q Consensus 69 ---~yLTt~g~~~~~d~~mI~~~G~~~~~r~~~~~~~~ 103 (118)
+|+++.|.+. +.++.-++.|.....-.+++.|-.
T Consensus 86 aGA~FivsP~~~~-~vi~~a~~~~i~~iPG~~TptEi~ 122 (212)
T PRK05718 86 AGAQFIVSPGLTP-PLLKAAQEGPIPLIPGVSTPSELM 122 (212)
T ss_pred cCCCEEECCCCCH-HHHHHHHHcCCCEeCCCCCHHHHH
Confidence 8888888888 777878888887775566666643
No 104
>PF12994 DUF3878: Domain of unknown function, E. rectale Gene description (DUF3878); InterPro: IPR024538 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=47.31 E-value=67 Score=26.69 Aligned_cols=88 Identities=19% Similarity=0.124 Sum_probs=55.6
Q ss_pred HHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc--------------------CcccCCC--
Q 041306 18 TLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM--------------------KLLTTPN-- 75 (118)
Q Consensus 18 ~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~--------------------~yLTt~g-- 75 (118)
.|..| ++--|+|-+-|+|..|.+++++ |.+-.--+..+||-.-++.. .+|....
T Consensus 141 ~La~L---~eFpPlnyy~~Vpe~~~e~~~~-t~eai~~M~elA~ea~D~~~~~~L~~Yrk~p~k~~~~~la~mL~~~kh~ 216 (299)
T PF12994_consen 141 KLAKL---AEFPPLNYYPPVPEKPEENWPP-TEEAIDVMEELAREAGDKSYLKMLRLYRKHPSKRMARKLARMLHRKKHQ 216 (299)
T ss_pred HHHHh---ccCCCcccCCCCCcccccCCcC-cHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCcHHHHHHHHHHhhhhhhh
Confidence 45555 5677999999999998877553 44333333444444333322 4554332
Q ss_pred CCHHHHHHHHHHcCCCCCCCCCcchhhhhhhhHh
Q 041306 76 NNFVADQLMFKVLGLTPKAPSFHEDEANVSKAES 109 (118)
Q Consensus 76 ~~~~~d~~mI~~~G~~~~~r~~~~~~~~~~~~~~ 109 (118)
.=.+...+.|+++--....|.|..+.....+...
T Consensus 217 ~~~~~l~e~l~~As~~Yp~R~fg~~~~~~~q~~~ 250 (299)
T PF12994_consen 217 KVYDLLIEKLQEASSPYPRRDFGEDIDERIQKKR 250 (299)
T ss_pred HHHHHHHHHHHHHhccCCcccccHHHHHHHHHHH
Confidence 3567777888888888888899877666555443
No 105
>PF09182 PuR_N: Bacterial purine repressor, N-terminal; InterPro: IPR015265 The N-terminal domain of the bacterial purine repressor PuR is a winged-helix domain, a subdivision of the HTH structural family. It consists of a canonical arrangement of secondary structures: a1-b1-a2-T-a3-b2-W-b3, where a2-T-a3 is the HTH motif, a3 is the recognition helix, and W is the wing. The domain allows for recognition of a conserved CGAA sequence in the centre of a DNA PurBox, resulting in binding to the major groove of DNA []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1O57_B 1P4A_D.
Probab=47.03 E-value=8 Score=25.52 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCcc-----Cc----ccCCCCCHHHHHHHHHH
Q 041306 54 IRMIATARIVMPKAM-----KL----LTTPNNNFVADQLMFKV 87 (118)
Q Consensus 54 lR~iAvaRl~lP~~~-----~y----LTt~g~~~~~d~~mI~~ 87 (118)
-|++++.++++.+-. +| ..++..+..+|+.+|++
T Consensus 4 eRlv~it~~L~~~P~~lisL~~Fae~f~~AKSsISEDl~iik~ 46 (70)
T PF09182_consen 4 ERLVAITKYLLENPNKLISLTYFAERFGAAKSSISEDLSIIKE 46 (70)
T ss_dssp HHHHHHHHHHHTSTT--EEHHHHHHHHT--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCcceEcHHHHHHHhcccccchHHHHHHHHH
Confidence 488999999985544 33 33666899999999886
No 106
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.47 E-value=83 Score=26.10 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=34.8
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 041306 3 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR 61 (118)
Q Consensus 3 ~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaR 61 (118)
=|+.+|.+|..++...++++. ..|=+-+|+|..|. +.++++.+.+.+...+++
T Consensus 259 ~GvNDs~e~~~~L~~ll~~l~---~~vnlIPyn~~~~~---~~~~ps~e~i~~f~~~L~ 311 (349)
T PRK14463 259 RGLNDSLEDAKRLVRLLSDIP---SKVNLIPFNEHEGC---DFRSPTQEAIDRFHKYLL 311 (349)
T ss_pred CCCCCCHHHHHHHHHHHhccC---ceEEEEecCCCCCC---CCCCCCHHHHHHHHHHHH
Confidence 367889999999999999995 34444445555553 445566666655544444
No 107
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=41.60 E-value=26 Score=31.16 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=28.1
Q ss_pred eeec-CCCHHHHH---HHHHHHhcCCCCCCcccccccccCCCCCCCCC
Q 041306 2 IIGL-GEAEEDRV---GLLHTLATLPTHPESVPINALLAVKGTPLQDQ 45 (118)
Q Consensus 2 I~Gl-GET~edrv---e~l~~Lr~L~~~~~svpin~fiP~~gTple~~ 45 (118)
|+|| |||.|--- ++|.+|-+-+--+.-|-|--..+.|||||...
T Consensus 367 v~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~ 414 (560)
T COG1031 367 VFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWER 414 (560)
T ss_pred EecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchhhh
Confidence 6898 98876544 44444433221234566677889999999754
No 108
>PF13213 DUF4021: Protein of unknown function (DUF4021)
Probab=41.25 E-value=7.3 Score=23.66 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=12.5
Q ss_pred CeeecCCCHHHHHHHH
Q 041306 1 GIIGLGEAEEDRVGLL 16 (118)
Q Consensus 1 gI~GlGET~edrve~l 16 (118)
|+|||=||..+-.+|.
T Consensus 28 GlYGMPET~IED~dH~ 43 (46)
T PF13213_consen 28 GLYGMPETDIEDKDHA 43 (46)
T ss_pred cccCCCcccccccccc
Confidence 7899999987666654
No 109
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=41.24 E-value=1.2e+02 Score=23.40 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHHHHHHHHHHHHhCCCcc-CcccCCCCCHHHHHHHHHH
Q 041306 10 EDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMIATARIVMPKAM-KLLTTPNNNFVADQLMFKV 87 (118)
Q Consensus 10 edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e~lR~iAvaRl~lP~~~-~yLTt~g~~~~~d~~mI~~ 87 (118)
++.++.|..+.++ ....|.-.+.=..|-||.+-- ..+ ..-.|++++.+++-.. +|+--+|=|-...+..++.
T Consensus 48 ~~li~~L~~~~~~---l~~l~~~~iWQ~DGRPMSGDIG~GT---t~aaV~l~~~v~~~~~PG~vQLAGGTN~~Tv~~Lk~ 121 (183)
T PF12617_consen 48 EGLIDYLWQLYEI---LRPLPCPLIWQLDGRPMSGDIGDGT---TRAAVKLAQKVLSAKPPGPVQLAGGTNAHTVEKLKQ 121 (183)
T ss_pred HHHHHHHHHHHHH---HhccCCCeeEeeCCcccCCCCCCcH---HHHHHHHHHHHhhcCCCCceEecCccchhHHHHHHH
Confidence 6777888888777 344554444446999997544 333 4456677888876544 9988888888899999999
Q ss_pred cCCC
Q 041306 88 LGLT 91 (118)
Q Consensus 88 ~G~~ 91 (118)
+|+-
T Consensus 122 ~gl~ 125 (183)
T PF12617_consen 122 MGLL 125 (183)
T ss_pred ccCc
Confidence 9983
No 110
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=39.66 E-value=93 Score=24.88 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=37.4
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCC-CCCCCCCHHHHHHHHHH
Q 041306 5 LGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL-QDQKPVEIWEMIRMIAT 59 (118)
Q Consensus 5 lGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTpl-e~~~~~s~~e~lR~iAv 59 (118)
-|.+.++..+++..+++++ . .+-+..|.|..++.- ......+..++++.++-
T Consensus 164 ~g~n~~ei~~l~~~~~~~g--v-~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~ 216 (334)
T TIGR02666 164 RGVNDDEIVDLAEFAKERG--V-TLRFIELMPLGEGNGWREKKFVSADEILERLEQ 216 (334)
T ss_pred CCCCHHHHHHHHHHHHhcC--C-eEEEEeccCCCCCccchhhcccCHHHHHHHHHh
Confidence 4889999999999999995 3 466777889876632 12234677778777653
No 111
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.57 E-value=50 Score=27.65 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=34.5
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHH
Q 041306 3 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRM 56 (118)
Q Consensus 3 ~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~ 56 (118)
=|.-.+.+|.-++...++.+. ..|=+..|+|++|.++ .+++.+.+.+.
T Consensus 259 ~gvND~~e~a~~L~~ll~~~~---~~VNLIp~Np~~~~~~---~~~s~~~~~~F 306 (345)
T PRK14466 259 KGLNDSLKHAKELVKLLRGID---CRVNLIRFHAIPGVDL---EGSDMARMEAF 306 (345)
T ss_pred CCCCCCHHHHHHHHHHHcCCC---ceEEEEecCCCCCCCC---cCCCHHHHHHH
Confidence 367789999999999999994 5677777888888643 34455544433
No 112
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.92 E-value=1e+02 Score=25.55 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=33.7
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHH
Q 041306 4 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATA 60 (118)
Q Consensus 4 GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAva 60 (118)
|+..|.+|.-.+...++++. ..|=+-+|+|.++.++. +++.+...+...++
T Consensus 272 gvNDs~ed~~~La~ll~~l~---~~VnLIPynp~~~~ky~---~ps~e~l~~f~~~L 322 (356)
T PRK14455 272 GVNDQVEHAEELADLLKGIK---CHVNLIPVNPVPERDYV---RTPKEDIFAFEDTL 322 (356)
T ss_pred CCCCCHHHHHHHHHHHhcCC---CcEEEEecCcCCCCCCc---CCCHHHHHHHHHHH
Confidence 67888999999999999984 44555567777776543 34555554443333
No 113
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=35.88 E-value=1.3e+02 Score=24.44 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=44.0
Q ss_pred CeeecC-CCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCccCcccCCCCCHH
Q 041306 1 GIIGLG-EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMKLLTTPNNNFV 79 (118)
Q Consensus 1 gI~GlG-ET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~~yLTt~g~~~~ 79 (118)
|++|.| -+.++.-+.+..+|++- ..-+++|.+.+.+ ...+.++ +++......+.+.+-.+.
T Consensus 38 G~l~~~~~~~~~l~~~i~~~~~~t--~~pfgvn~~~~~~----------~~~~~~~------~~~~~~v~~v~~~~g~p~ 99 (307)
T TIGR03151 38 GIIGAGNAPPDVVRKEIRKVKELT--DKPFGVNIMLLSP----------FVDELVD------LVIEEKVPVVTTGAGNPG 99 (307)
T ss_pred ceeccccCCHHHHHHHHHHHHHhc--CCCcEEeeecCCC----------CHHHHHH------HHHhCCCCEEEEcCCCcH
Confidence 566764 57788888999999873 4455677665421 2233333 333333332222233345
Q ss_pred HHHHHHHHcCCCCC
Q 041306 80 ADQLMFKVLGLTPK 93 (118)
Q Consensus 80 ~d~~mI~~~G~~~~ 93 (118)
+.++.+++.|....
T Consensus 100 ~~i~~lk~~g~~v~ 113 (307)
T TIGR03151 100 KYIPRLKENGVKVI 113 (307)
T ss_pred HHHHHHHHcCCEEE
Confidence 68999999997654
No 114
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.83 E-value=1e+02 Score=25.58 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=34.1
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 041306 3 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR 61 (118)
Q Consensus 3 ~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaR 61 (118)
=|+-.|.++.-.+...|+.+.. .|=+-+|+|.++.++ .+++.++..+...+++
T Consensus 264 pGvNDs~e~a~~La~~l~~l~~---~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~ 316 (345)
T PRK14457 264 GGVNDLPEHAEELANLLRGFQS---HVNLIPYNPIDEVEF---QRPSPKRIQAFQRVLE 316 (345)
T ss_pred CCcCCCHHHHHHHHHHHhcCCC---eEEEecCCCCCCCCC---CCCCHHHHHHHHHHHH
Confidence 3777889999999999999852 344444667666544 3556665555444443
No 115
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=35.41 E-value=1.5e+02 Score=24.18 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=45.1
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc
Q 041306 4 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA 67 (118)
Q Consensus 4 GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~ 67 (118)
|+-.+.++..+++..+.+++ +.-.-++.+.|..|+. +-.++++++.+++.-.|-.++..
T Consensus 245 giNDn~~~l~~L~~~l~~~g--v~pyyl~~~~p~gg~~---~f~v~~~~~~~i~~~l~~~~sG~ 303 (321)
T TIGR03821 245 GVNDNADTLAALSERLFDAG--VLPYYLHLLDKVQGAA---HFDVDDERARALMAELLARLPGY 303 (321)
T ss_pred CCCCCHHHHHHHHHHHHHcC--CeeCcccccCCCCCcc---cccCCHHHHHHHHHHHHHhCCCC
Confidence 44567788888999999996 6667777788888864 34578899999988888877643
No 116
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=35.31 E-value=1.9e+02 Score=24.39 Aligned_cols=76 Identities=12% Similarity=0.074 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc---------Cccc-CCCCC
Q 041306 8 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM---------KLLT-TPNNN 77 (118)
Q Consensus 8 T~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~---------~yLT-t~g~~ 77 (118)
|+|+..+-+..+++.+ ...|=|.. +..+..+.+.+.+.+...|-.+|+.. .|++ ..+.+
T Consensus 91 s~eeI~~~~~~~~~~G--~~Evli~g---------G~~p~~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s 159 (370)
T COG1060 91 SPEEILEEVREAVKRG--ITEVLIVG---------GEHPELSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLS 159 (370)
T ss_pred CHHHHHHHHHHHHHcC--CeEEEEec---------CcCCCcchHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCC
Confidence 6788888888888875 44444321 23444555678888888888788655 4444 34589
Q ss_pred HHHHHHHHHHcCCCCCC
Q 041306 78 FVADQLMFKVLGLTPKA 94 (118)
Q Consensus 78 ~~~d~~mI~~~G~~~~~ 94 (118)
.++.++.++++|+....
T Consensus 160 ~~E~l~~Lk~aGldsmp 176 (370)
T COG1060 160 YEEVLKRLKEAGLDSMP 176 (370)
T ss_pred HHHHHHHHHHcCCCcCc
Confidence 99999999999998764
No 117
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.33 E-value=1.4e+02 Score=24.81 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=33.6
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 041306 4 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR 61 (118)
Q Consensus 4 GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaR 61 (118)
|+-.|.++...+...++.+. ....|=+-+|+|.++.+ .++++.++.-+...+++
T Consensus 262 GvNDs~e~a~~La~~l~~l~-~~~~VnLIPynp~~~~~---~~~ps~e~i~~f~~~L~ 315 (348)
T PRK14467 262 GVNDSPEDALRLAQLIGKNK-KKFKVNLIPFNPDPELP---YERPELERVYKFQKILW 315 (348)
T ss_pred CccCCHHHHHHHHHHHhcCC-CceEEEEecCCCCCCCC---CCCCCHHHHHHHHHHHH
Confidence 66788899888989998873 12344444566666554 45566666554433433
No 118
>PF14044 NETI: NETI protein
Probab=34.12 E-value=45 Score=21.21 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCC----CCcchhhh-hhhhHhHHHHh
Q 041306 73 TPNNNFVADQLMFKVLGLTPKAP----SFHEDEAN-VSKAESYQEAI 114 (118)
Q Consensus 73 t~g~~~~~d~~mI~~~G~~~~~r----~~~~~~~~-~~~~~~~~~~~ 114 (118)
..+.|+++-++.+++.||.|..| -|.....+ +..-.+++|+|
T Consensus 5 ~enETI~~CL~RM~~eGY~PvrR~EkPiF~e~k~~g~~~~~~~~q~I 51 (57)
T PF14044_consen 5 EENETISDCLARMKKEGYMPVRRIEKPIFKEVKDGGKIEIEPLRQKI 51 (57)
T ss_pred cCCCcHHHHHHHHHHcCCCceeeccccceEEecCCCceeEEEcceEE
Confidence 56789999999999999999987 45554444 22333444443
No 119
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.45 E-value=1.2e+02 Score=25.39 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=32.1
Q ss_pred eeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHH
Q 041306 2 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIA 58 (118)
Q Consensus 2 I~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iA 58 (118)
|=|+-.+.+|...++..++++..+++-+| |+|+.+.++. +++.+.+.+...
T Consensus 286 I~GvNDs~eda~~L~~~l~~~~~~VnlIp---yn~~~~~~~~---~ps~e~i~~F~~ 336 (368)
T PRK14456 286 LEGINDSPEDARKLIRFASRFFCKINLID---YNSIVNIKFE---PVCSSTRERFRD 336 (368)
T ss_pred EcCCCCCHHHHHHHHHHHhcCCCeeEEee---eccCCCCCCC---CCCHHHHHHHHH
Confidence 34677888899999999998854455555 4555555543 345554444433
No 120
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=32.80 E-value=68 Score=28.27 Aligned_cols=59 Identities=20% Similarity=0.436 Sum_probs=44.6
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~ 68 (118)
||+=.|...+|.+.-+...-+++ ++- |+ ++|-|+...+. -...+.|.+|++|++.|...
T Consensus 224 aI~~vGDGyddLI~G~~a~id~~--vDv-----fV-vEGgPFN~a~d-Rl~aFakaVa~sRIL~pGkV 282 (505)
T PF10113_consen 224 AIMHVGDGYDDLITGLKACIDMG--VDV-----FV-VEGGPFNRAKD-RLKAFAKAVAASRILVPGKV 282 (505)
T ss_pred EEEEecCChHHHHHHHHHHHhcC--CcE-----EE-EeCCCcccchh-HHHHHHHHHHHheeeecCcE
Confidence 46667999999999999998885 442 22 47888865442 45568899999999999755
No 121
>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.
Probab=32.62 E-value=47 Score=18.34 Aligned_cols=15 Identities=40% Similarity=0.629 Sum_probs=10.3
Q ss_pred cCCCHHHHHHHHHHH
Q 041306 5 LGEAEEDRVGLLHTL 19 (118)
Q Consensus 5 lGET~edrve~l~~L 19 (118)
+|||..||.+-+..|
T Consensus 15 FGE~~~~R~~RLr~l 29 (30)
T PF08799_consen 15 FGETDADRRERLRRL 29 (30)
T ss_dssp TT--HHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHh
Confidence 599999998877654
No 122
>PRK05481 lipoyl synthase; Provisional
Probab=31.52 E-value=92 Score=24.97 Aligned_cols=48 Identities=8% Similarity=0.093 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCcc---CcccCCCC---CHHHHHHHHHHcCCCCCC
Q 041306 47 PVEIWEMIRMIATARIVMPKAM---KLLTTPNN---NFVADQLMFKVLGLTPKA 94 (118)
Q Consensus 47 ~~s~~e~lR~iAvaRl~lP~~~---~yLTt~g~---~~~~d~~mI~~~G~~~~~ 94 (118)
..+.+++++++..+|-.+|... +++.--|. +..+.+..++++|+....
T Consensus 176 ~~t~e~~le~i~~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~ 229 (289)
T PRK05481 176 GADYERSLELLKRAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILT 229 (289)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEE
Confidence 4689999999999999998876 45544454 455667788889987653
No 123
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.26 E-value=1.6e+02 Score=24.63 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=32.6
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHH
Q 041306 4 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRM 56 (118)
Q Consensus 4 GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~ 56 (118)
|+-.|.++..++...|+.+. -.|-+-+|+|++|.++. .++.+.+.+.
T Consensus 252 GVNDs~e~a~~L~~~l~~~~---~~vNLIPyN~v~g~~~~---rp~~~~i~~f 298 (344)
T PRK14464 252 GVNDSDEEMDGIVRLLKGKY---AVMNLIPYNSVDGDAYR---RPSGERIVAM 298 (344)
T ss_pred CCCCCHHHHHHHHHHHhccc---cccceecCCccCCCCcc---CCCHHHHHHH
Confidence 77789999999999999884 44555557888888654 3344444433
No 124
>PRK08445 hypothetical protein; Provisional
Probab=31.21 E-value=2.6e+02 Score=23.06 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc---------Ccc-cCCCCC
Q 041306 8 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM---------KLL-TTPNNN 77 (118)
Q Consensus 8 T~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~---------~yL-Tt~g~~ 77 (118)
+.++.++.+...++.+ ...+ ++ ..| +.+..+.+.+..++...+-.+|+.. +|+ .-.|.+
T Consensus 74 ~~eeI~~~~~~a~~~g--~~~i----~~-~gg----~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~ 142 (348)
T PRK08445 74 SFEEIDKKIEELLAIG--GTQI----LF-QGG----VHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKIS 142 (348)
T ss_pred CHHHHHHHHHHHHHcC--CCEE----EE-ecC----CCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCC
Confidence 7799999999999996 4433 22 122 2334567788889998999898765 222 225677
Q ss_pred HHHHHHHHHHcCCCC
Q 041306 78 FVADQLMFKVLGLTP 92 (118)
Q Consensus 78 ~~~d~~mI~~~G~~~ 92 (118)
.++.++.++++|+.-
T Consensus 143 ~~e~L~~LkeAGl~~ 157 (348)
T PRK08445 143 IKEVLERLQAKGLSS 157 (348)
T ss_pred HHHHHHHHHHcCCCC
Confidence 799999999999984
No 125
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=31.09 E-value=2.9e+02 Score=22.40 Aligned_cols=76 Identities=11% Similarity=-0.002 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc-Cc---------ccCCCC
Q 041306 7 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM-KL---------LTTPNN 76 (118)
Q Consensus 7 ET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~-~y---------LTt~g~ 76 (118)
-|.|+.++.+..+++++ ...+-|. .|+. +....+.++.++...+-..|+.. .. .++.|.
T Consensus 70 ls~eeI~e~~~~~~~~G--~~~i~l~-----gG~~----p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~ 138 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAG--ATEVCIQ-----GGIH----PDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGL 138 (343)
T ss_pred CCHHHHHHHHHHHHHCC--CCEEEEE-----eCCC----CCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCC
Confidence 37899999999999885 5555533 3321 22345667888888887777654 11 246777
Q ss_pred CHHHHHHHHHHcCCCCC
Q 041306 77 NFVADQLMFKVLGLTPK 93 (118)
Q Consensus 77 ~~~~d~~mI~~~G~~~~ 93 (118)
..++.++.++++|+.-.
T Consensus 139 ~~~e~l~~LkeAGl~~i 155 (343)
T TIGR03551 139 SVEEALKRLKEAGLDSM 155 (343)
T ss_pred CHHHHHHHHHHhCcccc
Confidence 88999999999999754
No 126
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=30.50 E-value=44 Score=21.41 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=23.0
Q ss_pred eec--CCCHHHHHHHHHHHhcCCCCCCcccccc
Q 041306 3 IGL--GEAEEDRVGLLHTLATLPTHPESVPINA 33 (118)
Q Consensus 3 ~Gl--GET~edrve~l~~Lr~L~~~~~svpin~ 33 (118)
.|| |=|.++|++-|+.++.+. ++.+|-..
T Consensus 27 ~GLKcGGTl~ERA~RLfs~kg~~--~~~~d~~l 57 (60)
T PF13297_consen 27 LGLKCGGTLQERAARLFSVKGLP--LEEIDKKL 57 (60)
T ss_pred cCCccCCCHHHHHHHHHHhcCCC--hhhCCHHH
Confidence 366 889999999999999995 66666433
No 127
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.41 E-value=1.5e+02 Score=24.77 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=33.8
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHH
Q 041306 4 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATA 60 (118)
Q Consensus 4 GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAva 60 (118)
|+-.|.||.-.+...++.++.+++-+|+|. . + .+.++++.+++.+...+.
T Consensus 265 GvNDs~eda~~L~~ll~~l~~kVnLIPyN~---~-~---~~~~~ps~e~i~~F~~~L 314 (342)
T PRK14465 265 GVNMGRENANKLVKIARSLDCKINVIPLNT---E-F---FGWRRPTDDEVAEFIMLL 314 (342)
T ss_pred CccCCHHHHHHHHHHHhhCCCcEEEEccCC---C-C---CCCCCCCHHHHHHHHHHH
Confidence 666788888888888998865666666555 2 3 456667777665544443
No 128
>PRK05926 hypothetical protein; Provisional
Probab=29.56 E-value=3e+02 Score=23.02 Aligned_cols=74 Identities=15% Similarity=0.102 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc-Cc---------ccCCCCC
Q 041306 8 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM-KL---------LTTPNNN 77 (118)
Q Consensus 8 T~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~-~y---------LTt~g~~ 77 (118)
|.|+.++.+... +.+ ...+-|.. |. .+..+.+.+..++...|-.+|+.. .. ....|.+
T Consensus 100 s~eeI~~~a~~a-~~G--~~ei~iv~-----G~----~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~ 167 (370)
T PRK05926 100 TPDQLVQSIKEN-PSP--ITETHIVA-----GC----FPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLP 167 (370)
T ss_pred CHHHHHHHHHHH-hcC--CCEEEEEe-----Cc----CCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCC
Confidence 678888888877 454 55555442 43 233567778888888888888765 21 2245788
Q ss_pred HHHHHHHHHHcCCCCC
Q 041306 78 FVADQLMFKVLGLTPK 93 (118)
Q Consensus 78 ~~~d~~mI~~~G~~~~ 93 (118)
.++.++.++++|+.-.
T Consensus 168 ~~e~l~~LkeAGl~~~ 183 (370)
T PRK05926 168 VKEVLQTLKIAGLDSI 183 (370)
T ss_pred HHHHHHHHHHcCcCcc
Confidence 9999999999999543
No 129
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=29.49 E-value=98 Score=27.52 Aligned_cols=67 Identities=25% Similarity=0.376 Sum_probs=47.7
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCC-CCCcccccccccCCCCCCCC------CCCCCHHHHHHHHHHHHHhCCCcc
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPT-HPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPKAM 68 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~-~~~svpin~fiP~~gTple~------~~~~s~~e~lR~iAvaRl~lP~~~ 68 (118)
|.|| |-..+-=++++..+=+... .||.+-|.+-.=++||+|.. -.+.+.+|++.+++-+-.++|+..
T Consensus 255 MpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Ykpy~~EEaVeli~~i~~~~p~wv 329 (515)
T COG1243 255 MPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTTEEAVELIVEIYRLEPKWV 329 (515)
T ss_pred cCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 3455 5555555555555555521 37777777666689999864 358999999999999988999876
No 130
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.09 E-value=1.9e+02 Score=24.18 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=34.5
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 041306 3 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR 61 (118)
Q Consensus 3 ~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaR 61 (118)
=|.--|.+|.-.+...++.+. ..|=+-+|+|+++.++ ++++.+.+.+...+++
T Consensus 272 ~GvNDs~e~a~~La~llk~l~---~~VnLIPyn~~~~~~~---~~ps~e~i~~f~~~l~ 324 (356)
T PRK14462 272 KDVNDDLKSAKKLVKLLNGIK---AKVNLILFNPHEGSKF---ERPSLEDMIKFQDYLN 324 (356)
T ss_pred CCCCCCHHHHHHHHHHHhhcC---cEEEEEeCCCCCCCCC---CCCCHHHHHHHHHHHH
Confidence 467788899888888888885 3444444667777655 4556665555444433
No 131
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.92 E-value=73 Score=27.07 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=31.1
Q ss_pred eecCCCHHHHHHHHHHHhcCCC-C--CCcccccccccCCCCCCCCCCCCCHHHHH
Q 041306 3 IGLGEAEEDRVGLLHTLATLPT-H--PESVPINALLAVKGTPLQDQKPVEIWEMI 54 (118)
Q Consensus 3 ~GlGET~edrve~l~~Lr~L~~-~--~~svpin~fiP~~gTple~~~~~s~~e~l 54 (118)
=|.-.|.+|--++...|+.+.. + +-.|=+-+|+|++|+++.. ++.+.+.
T Consensus 280 ~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~---ps~~~i~ 331 (371)
T PRK14461 280 QGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGR---SERERVT 331 (371)
T ss_pred CCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCC---CCHHHHH
Confidence 3677888999999999998820 0 1233334477888987653 3455443
No 132
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.96 E-value=2e+02 Score=23.48 Aligned_cols=51 Identities=16% Similarity=0.048 Sum_probs=28.5
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHH
Q 041306 3 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATA 60 (118)
Q Consensus 3 ~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAva 60 (118)
-|...+.+|..++...++.+. ..|-+-+|+|..+ +..+++.+++.+...++
T Consensus 260 ~g~NDs~ed~~~La~llk~~~---~~VnLIpynp~~~----~~~~ps~e~l~~f~~~l 310 (343)
T PRK14469 260 KGFNDEIEDAKKLAELLKGLK---VFVNLIPVNPTVP----GLEKPSRERIERFKEIL 310 (343)
T ss_pred CCCCCCHHHHHHHHHHHhccC---cEEEEEecCCCCc----cCCCCCHHHHHHHHHHH
Confidence 356677788888888888774 2344444555433 23444555544443333
No 133
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=27.70 E-value=1.6e+02 Score=24.72 Aligned_cols=97 Identities=18% Similarity=0.191 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc-------------Cccc
Q 041306 6 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM-------------KLLT 72 (118)
Q Consensus 6 GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~-------------~yLT 72 (118)
|||.+|...++..+++.- +...+|-..++++-||.=.+.......-..- +-++..=+|=+. ++|.
T Consensus 50 get~eEi~G~~~am~~~~-~~~~~p~~~~vDi~GTGGDg~~T~NiSt~aA-~v~A~~Gv~VaKHGnrs~sSksGsaDvle 127 (338)
T COG0547 50 GETPEEIAGFAEAMREHA-PKLPVPAADPVDIVGTGGDGANTINISTAAA-IVAAAAGVPVAKHGNRSVSSKSGSADVLE 127 (338)
T ss_pred cCCHHHHHHHHHHHHHhc-ccCCCCCCCCCCeecCCCCCCCcccchHHHH-HHHHhCCCcEEeECCCCCCCCCcHHHHHH
Confidence 999999999999999852 2344444444778788765555322221221 222333233211 4444
Q ss_pred CCC----CCHHHHHHHHHHcCCCCCCC-CCcchhhhh
Q 041306 73 TPN----NNFVADQLMFKVLGLTPKAP-SFHEDEANV 104 (118)
Q Consensus 73 t~g----~~~~~d~~mI~~~G~~~~~r-~~~~~~~~~ 104 (118)
.-| .++++..++|.+.||-..-. .|++.-+++
T Consensus 128 aLGv~l~~~~e~~~~~l~~~g~~FlfAp~~hp~~k~v 164 (338)
T COG0547 128 ALGVNLELSPEQAARALEETGIGFLFAPAYHPAMKHV 164 (338)
T ss_pred HcCCCCCCCHHHHHHHHHhcCeEEEEccccCHHHHHH
Confidence 444 58899999999987654321 566655543
No 134
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=25.58 E-value=1.9e+02 Score=23.06 Aligned_cols=52 Identities=12% Similarity=0.037 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCC-CCCCCCCCCHHHHHHHHHHH
Q 041306 6 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PLQDQKPVEIWEMIRMIATA 60 (118)
Q Consensus 6 GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gT-ple~~~~~s~~e~lR~iAva 60 (118)
|.+.+|..+++..+++++ . .+-+..|+|+.+. ........+..++++.++-.
T Consensus 170 g~n~~ei~~l~~~~~~~g--v-~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 222 (331)
T PRK00164 170 GVNDDEIPDLLEWAKDRG--I-QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAER 222 (331)
T ss_pred CCCHHHHHHHHHHHHhCC--C-eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhc
Confidence 889999999999999985 3 4555667776544 33233346777777766543
No 135
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=25.01 E-value=2.5e+02 Score=23.27 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=31.1
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHH
Q 041306 4 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMI 57 (118)
Q Consensus 4 GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~i 57 (118)
|+-.+.++...+...++.++. .|=+-+|+|+++.++ .+++.+++.+..
T Consensus 268 GvNDs~e~a~~La~llk~l~~---~VnLIPynp~~~~~~---~~ps~e~i~~f~ 315 (355)
T TIGR00048 268 GVNDQVEHAEELAELLKGTKC---KVNLIPWNPFPEADY---ERPSNEQIDRFA 315 (355)
T ss_pred CCCCCHHHHHHHHHHHhcCCC---ceEEEecccCCCCCC---CCCCHHHHHHHH
Confidence 677888999999999999852 333344556666544 345666554443
No 136
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function.
Probab=24.85 E-value=81 Score=24.60 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHhcCCC-CCCcccccccc
Q 041306 6 GEAEEDRVGLLHTLATLPT-HPESVPINALL 35 (118)
Q Consensus 6 GET~edrve~l~~Lr~L~~-~~~svpin~fi 35 (118)
|-+.+.+-.|+..|++|++ .|.++|+..-+
T Consensus 5 GRd~~av~~HI~EL~~lGVp~Ps~vP~~Y~v 35 (194)
T PF11010_consen 5 GRDQEAVEHHIEELAALGVPPPSSVPLFYRV 35 (194)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCCCEEEEe
Confidence 7788999999999999996 78888875443
No 137
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=24.59 E-value=1.9e+02 Score=22.07 Aligned_cols=71 Identities=10% Similarity=-0.027 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCccCcccCCCCCHHHHHHHHHHcCCC
Q 041306 12 RVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMKLLTTPNNNFVADQLMFKVLGLT 91 (118)
Q Consensus 12 rve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~~yLTt~g~~~~~d~~mI~~~G~~ 91 (118)
+.+.+..+.+++ ++.++|- |.| ++ ....+++.+-.+.+ .+-|...-+.-..+.+.+...+++++.|+.
T Consensus 12 ~~eda~~~~~~G--ad~iGfI-~~~--~S----~R~V~~~~a~~i~~---~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d 79 (210)
T PRK01222 12 TPEDAEAAAELG--ADAIGFV-FYP--KS----PRYVSPEQAAELAA---ALPPFVKVVGVFVNASDEEIDEIVETVPLD 79 (210)
T ss_pred cHHHHHHHHHcC--CCEEEEc-cCC--CC----CCcCCHHHHHHHHH---hCCCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence 345677888886 9999975 333 22 22356665544433 222333333335567899999999999988
Q ss_pred CCC
Q 041306 92 PKA 94 (118)
Q Consensus 92 ~~~ 94 (118)
..+
T Consensus 80 ~vQ 82 (210)
T PRK01222 80 LLQ 82 (210)
T ss_pred EEE
Confidence 776
No 138
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=24.51 E-value=3.6e+02 Score=21.42 Aligned_cols=75 Identities=12% Similarity=0.094 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc-Ccc---------cCCCCC
Q 041306 8 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM-KLL---------TTPNNN 77 (118)
Q Consensus 8 T~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~-~yL---------Tt~g~~ 77 (118)
+.|+.++.+...++.+ ...+-|. .|. .+....+.+..++...|-..|+.. .-+ .+.|.+
T Consensus 37 s~eeI~~~~~~~~~~G--~~~i~l~-----gg~----~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~ 105 (309)
T TIGR00423 37 SLEEILEKVKEAVAKG--ATEVCIQ-----GGL----NPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLS 105 (309)
T ss_pred CHHHHHHHHHHHHHCC--CCEEEEe-----cCC----CCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCC
Confidence 6788888888888875 5565542 232 122345556777777777777554 212 256778
Q ss_pred HHHHHHHHHHcCCCCC
Q 041306 78 FVADQLMFKVLGLTPK 93 (118)
Q Consensus 78 ~~~d~~mI~~~G~~~~ 93 (118)
.++.++.++++|+.-.
T Consensus 106 ~~e~l~~LkeAGl~~i 121 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSM 121 (309)
T ss_pred HHHHHHHHHHcCCCcC
Confidence 8999999999999754
No 139
>PLN02363 phosphoribosylanthranilate isomerase
Probab=23.99 E-value=2e+02 Score=22.95 Aligned_cols=71 Identities=4% Similarity=-0.118 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-ccCcccCCCCCHHHHHHHHHHcCC
Q 041306 12 RVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMKLLTTPNNNFVADQLMFKVLGL 90 (118)
Q Consensus 12 rve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~-~~~yLTt~g~~~~~d~~mI~~~G~ 90 (118)
+.+.+....+++ ++.++|.++ | ++ ....+++.+..+++.. -|. ..-+.-..+.+.++..++++++|+
T Consensus 56 ~~eda~~a~~~G--aD~iGfIf~-~--~S----pR~Vs~e~a~~I~~~l---~~~~~~~VgVfv~~~~~~I~~~~~~~~l 123 (256)
T PLN02363 56 SARDAAMAVEAG--ADFIGMILW-P--KS----KRSISLSVAKEISQVA---REGGAKPVGVFVDDDANTILRAADSSDL 123 (256)
T ss_pred cHHHHHHHHHcC--CCEEEEecC-C--CC----CCcCCHHHHHHHHHhc---cccCccEEEEEeCCCHHHHHHHHHhcCC
Confidence 456677777886 999998643 2 22 2236777666554432 232 222223466899999999999999
Q ss_pred CCCC
Q 041306 91 TPKA 94 (118)
Q Consensus 91 ~~~~ 94 (118)
...+
T Consensus 124 d~VQ 127 (256)
T PLN02363 124 ELVQ 127 (256)
T ss_pred CEEE
Confidence 8876
No 140
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=23.85 E-value=2.6e+02 Score=22.82 Aligned_cols=58 Identities=14% Similarity=0.054 Sum_probs=40.9
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 041306 4 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 66 (118)
Q Consensus 4 GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~ 66 (118)
|.-.+.+...++...|.+++ +.-.-++.+.|..|+ .+-.++.++.+.+++-.|-.+|.
T Consensus 262 gvnD~~~~l~~L~~~l~~~g--V~pyyl~~~~~~~g~---~~f~~~~~~~~~i~~~l~~~~sG 319 (331)
T TIGR00238 262 GVNDRAQILAKLSIALFKVG--IIPYYLHYLDKVQGA---KHFLVPDAEAAQIVKELARLTSG 319 (331)
T ss_pred CcCCCHHHHHHHHHHHhhcC--eecCeecCcCCCCCc---ccccCCHHHHHHHHHHHHhcCCC
Confidence 44456667777888888885 666666777888887 34457888888887777766653
No 141
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=23.68 E-value=53 Score=23.54 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=26.0
Q ss_pred HHHHHHHhC--CCcc--------CcccCCCCCHHHHHHHHHHcCCCCC
Q 041306 56 MIATARIVM--PKAM--------KLLTTPNNNFVADQLMFKVLGLTPK 93 (118)
Q Consensus 56 ~iAvaRl~l--P~~~--------~yLTt~g~~~~~d~~mI~~~G~~~~ 93 (118)
+|..||-+| |++. -||-.+|.+.+++-++++++|-...
T Consensus 5 li~~A~~FL~~p~V~~sp~~~k~~FL~sKGLt~~EI~~al~~a~~~~~ 52 (136)
T PF04695_consen 5 LIEQAVKFLQDPKVRNSPLEKKIAFLESKGLTEEEIDEALGRAGSPPA 52 (136)
T ss_dssp HHHHHHHHHCTTTCCCS-HHHHHHHHHHCT--HHHHHHHHHHHT--S-
T ss_pred HHHHHHHHhCCcccccCCHHHHHHHHHcCCCCHHHHHHHHHhcCCccc
Confidence 455665555 4554 8899999999999999999998874
No 142
>PF09050 SNN_linker: Stannin unstructured linker; InterPro: IPR015136 This entry represents an unstructured protein region which connects two adjacent stannin helical domains. It contains a conserved CXC metal-binding motif and a putative 14-3-3-zeta binding domain. Upon coordinating dimethytin, considerable structural or dynamic changes in the flexible loop region of SNN may take place, recruiting other binding partners such as 14-3-3-zeta, and thereby initiating the apoptotic cascade []. ; PDB: 1ZZA_A.
Probab=23.67 E-value=15 Score=19.62 Aligned_cols=10 Identities=50% Similarity=0.896 Sum_probs=7.6
Q ss_pred CeeecCCCHH
Q 041306 1 GIIGLGEAEE 10 (118)
Q Consensus 1 gI~GlGET~e 10 (118)
.|+|-|||.|
T Consensus 16 sivgegetke 25 (26)
T PF09050_consen 16 SIVGEGETKE 25 (26)
T ss_dssp TTTTTTSSST
T ss_pred hcccCCccCC
Confidence 3788899864
No 143
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=23.37 E-value=1.8e+02 Score=24.12 Aligned_cols=84 Identities=13% Similarity=-0.005 Sum_probs=45.7
Q ss_pred Ceeec-CCCHHHHHHHHHHHhcC-CCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCccCcccCCCCCH
Q 041306 1 GIIGL-GEAEEDRVGLLHTLATL-PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMKLLTTPNNNF 78 (118)
Q Consensus 1 gI~Gl-GET~edrve~l~~Lr~L-~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~~yLTt~g~~~ 78 (118)
|++|. .-+.++.-+.+..++++ . ..-.++|.....+. + ...+.+.+ ++.....++++.+-.+
T Consensus 30 G~la~~~~~~e~l~~~i~~~~~l~t--dkPfGVnl~~~~~~-~-------~~~~~l~v------i~e~~v~~V~~~~G~P 93 (320)
T cd04743 30 PFIALALMRGEQVKALLEETAELLG--DKPWGVGILGFVDT-E-------LRAAQLAV------VRAIKPTFALIAGGRP 93 (320)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhcc--CCCeEEEEeccCCC-c-------chHHHHHH------HHhcCCcEEEEcCCCh
Confidence 45665 46778888888899996 3 33455555221111 1 12233333 3333344444444344
Q ss_pred HHHHHHHHHcCCCCCCCCCcchh
Q 041306 79 VADQLMFKVLGLTPKAPSFHEDE 101 (118)
Q Consensus 79 ~~d~~mI~~~G~~~~~r~~~~~~ 101 (118)
.. .+.+++.|..+.....+..+
T Consensus 94 ~~-~~~lk~~Gi~v~~~v~s~~~ 115 (320)
T cd04743 94 DQ-ARALEAIGISTYLHVPSPGL 115 (320)
T ss_pred HH-HHHHHHCCCEEEEEeCCHHH
Confidence 44 69999999988653344333
No 144
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.46 E-value=2.6e+02 Score=23.11 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=32.3
Q ss_pred eeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHH
Q 041306 2 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIAT 59 (118)
Q Consensus 2 I~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAv 59 (118)
|-|+-.|.+|.-.+...++.+..++.-+|+| |.++ ...+++.+++.+...+
T Consensus 254 I~GvNDseeda~~La~llk~l~~~vnlI~~N---~~~~----~~~~p~~~~i~~f~~~ 304 (336)
T PRK14470 254 ISGVNVGEEDAAALGRLLAGIPVRLNPIAVN---DATG----RYRPPDEDEWNAFRDA 304 (336)
T ss_pred EecccCCHHHHHHHHHHHhcCCCeEEEeccC---CCCC----CccCCCHHHHHHHHHH
Confidence 4477788999999999999885445555544 4444 3445566655444333
No 145
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=21.72 E-value=2.2e+02 Score=21.69 Aligned_cols=71 Identities=8% Similarity=0.124 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCccCcccCCCCCHHHHHHHHHHcCCC
Q 041306 12 RVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMKLLTTPNNNFVADQLMFKVLGLT 91 (118)
Q Consensus 12 rve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~~yLTt~g~~~~~d~~mI~~~G~~ 91 (118)
+.+.+..+.+++ ++.++|.++ | ++ ....+++.+-++++ .+-|....+.-..+.+.++..++++.+|+.
T Consensus 10 ~~eda~~~~~~G--aD~iGfIf~-~--~S----pR~V~~~~a~~i~~---~~~~~~~~VgVf~~~~~~~i~~~~~~~~~d 77 (207)
T PRK13958 10 TIKDVTAASQLP--IDAIGFIHY-E--KS----KRHQTITQIKKLAS---AVPNHIDKVCVVVNPDLTTIEHILSNTSIN 77 (207)
T ss_pred cHHHHHHHHHcC--CCEEEEecC-C--CC----cccCCHHHHHHHHH---hCCCCCCEEEEEeCCCHHHHHHHHHhCCCC
Confidence 456677888886 999998633 3 22 22367776654433 222333322234567888888888888888
Q ss_pred CCC
Q 041306 92 PKA 94 (118)
Q Consensus 92 ~~~ 94 (118)
..+
T Consensus 78 ~vQ 80 (207)
T PRK13958 78 TIQ 80 (207)
T ss_pred EEE
Confidence 775
No 146
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=21.42 E-value=4.2e+02 Score=21.02 Aligned_cols=71 Identities=23% Similarity=0.224 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCccCcccCCCCCHHHHHHHHHH
Q 041306 8 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMKLLTTPNNNFVADQLMFKV 87 (118)
Q Consensus 8 T~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~~yLTt~g~~~~~d~~mI~~ 87 (118)
|.++..+.+..+.+++ ...|-|. -|.|+-. + + +.+++..++-..+...-.+||.|.-..+.++.+++
T Consensus 50 s~eei~~~i~~~~~~g--i~~I~~t-----GGEPll~-~--~---l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~ 116 (331)
T PRK00164 50 SLEEIERLVRAFVALG--VRKVRLT-----GGEPLLR-K--D---LEDIIAALAALPGIRDLALTTNGYLLARRAAALKD 116 (331)
T ss_pred CHHHHHHHHHHHHHCC--CCEEEEE-----CCCCcCc-c--C---HHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHH
Confidence 5677777777777774 5555532 4888754 1 2 34444444432111224467888777778888889
Q ss_pred cCCC
Q 041306 88 LGLT 91 (118)
Q Consensus 88 ~G~~ 91 (118)
+|+.
T Consensus 117 agl~ 120 (331)
T PRK00164 117 AGLD 120 (331)
T ss_pred cCCC
Confidence 9885
No 147
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=21.23 E-value=4.2e+02 Score=22.65 Aligned_cols=78 Identities=14% Similarity=0.079 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCccCcccCCCCCHHHHHHHHH
Q 041306 7 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMKLLTTPNNNFVADQLMFK 86 (118)
Q Consensus 7 ET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~~yLTt~g~~~~~d~~mI~ 86 (118)
-|.++.++.+..+.+.-.....|. |. -+|=||-+. +..+.++...|--+|+..--|+|.|.-..+.++-|.
T Consensus 60 Ltpee~~~~i~~v~~~~~~~~~V~---ia-G~GEPLl~~-----e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~ 130 (442)
T TIGR01290 60 LTPEQALRKARQVAAEIPQLSVVG---IA-GPGDPLANI-----GKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLV 130 (442)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEE---Ee-cCCCcccCc-----cccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHH
Confidence 378888888888775410112222 22 367777543 335666666776677777677889976567777888
Q ss_pred HcCCCCC
Q 041306 87 VLGLTPK 93 (118)
Q Consensus 87 ~~G~~~~ 93 (118)
++|+...
T Consensus 131 ~~gvd~V 137 (442)
T TIGR01290 131 DLGVGHV 137 (442)
T ss_pred HCCCCeE
Confidence 8887644
No 148
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.87 E-value=3.4e+02 Score=22.82 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=34.3
Q ss_pred eeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHH
Q 041306 2 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR 61 (118)
Q Consensus 2 I~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaR 61 (118)
|=|+--|.++.-.+...++.+.. .|=+-+|+|++|.++ ++++.+++.+...+++
T Consensus 270 IpGvNDs~e~a~~La~ll~~l~~---~VnLIPYN~~~~~~~---~~ps~e~v~~f~~~L~ 323 (372)
T PRK11194 270 LDHVNDGTEHAHQLAELLKDTPC---KINLIPWNPFPGAPY---GRSSNSRIDRFSKVLM 323 (372)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCc---eEEEecCCCCCCCCC---CCCCHHHHHHHHHHHH
Confidence 34677888998888888888842 444444667777654 4556665554444443
No 149
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=20.66 E-value=62 Score=19.15 Aligned_cols=17 Identities=18% Similarity=0.038 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHcCCCC
Q 041306 76 NNFVADQLMFKVLGLTP 92 (118)
Q Consensus 76 ~~~~~d~~mI~~~G~~~ 92 (118)
.+.++.++.++++||.|
T Consensus 29 ~tr~rI~~~a~~lgY~p 45 (46)
T PF00356_consen 29 ETRERILEAAEELGYRP 45 (46)
T ss_dssp HHHHHHHHHHHHHTB-S
T ss_pred HHHHHHHHHHHHHCCCC
Confidence 46788888899999887
No 150
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=20.60 E-value=63 Score=25.53 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=24.9
Q ss_pred HHHHhCCCcc---CcccCCC------------CCHHHHHHHHHHcCCCCC
Q 041306 59 TARIVMPKAM---KLLTTPN------------NNFVADQLMFKVLGLTPK 93 (118)
Q Consensus 59 vaRl~lP~~~---~yLTt~g------------~~~~~d~~mI~~~G~~~~ 93 (118)
+||-++.... .||-..+ .+.++|.++|+++||+..
T Consensus 10 ~frqlfe~~SsTytYll~d~~~~~AviIDPV~et~~RD~qlikdLgl~Li 59 (237)
T KOG0814|consen 10 IFRQLFEFESSTYTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLGLDLI 59 (237)
T ss_pred HHHHHhccccceEEEEeeeCCCCceEEecchhhcccchHHHHHhcCceee
Confidence 6777775433 5554333 378999999999999864
No 151
>PF04574 DUF592: Protein of unknown function (DUF592); InterPro: IPR007654 This N-terminal region is found in SIR2 proteins (IPR003000 from INTERPRO) and its homologues. Its function is uncharacterised.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0017136 NAD-dependent histone deacetylase activity, 0051287 NAD binding, 0006342 chromatin silencing, 0006355 regulation of transcription, DNA-dependent, 0006476 protein deacetylation; PDB: 2HJH_B.
Probab=20.45 E-value=34 Score=25.80 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHcCCCCCCCC
Q 041306 76 NNFVADQLMFKVLGLTPKAPS 96 (118)
Q Consensus 76 ~~~~~d~~mI~~~G~~~~~r~ 96 (118)
.+......||+.+||+|..++
T Consensus 56 ~ns~~I~~lIklLGF~~kd~~ 76 (153)
T PF04574_consen 56 ANSLDIYYLIKLLGFEPKDIE 76 (153)
T ss_dssp ---------------------
T ss_pred CcHHHHHHHHHHhCCCcccHH
Confidence 678899999999999998763
No 152
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=20.23 E-value=2.6e+02 Score=23.23 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc----CcccCCCCCHHHHHHHHHHcCCCCC
Q 041306 38 KGTPLQDQKPVEIWEMIRMIATARIVMPKAM----KLLTTPNNNFVADQLMFKVLGLTPK 93 (118)
Q Consensus 38 ~gTple~~~~~s~~e~lR~iAvaRl~lP~~~----~yLTt~g~~~~~d~~mI~~~G~~~~ 93 (118)
.|||.- +++.+..+++...|-.+|... ..-...+.-..+.++.++++|+.-.
T Consensus 81 GGTPs~----L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~Gvnri 136 (394)
T PRK08898 81 GGTPSL----LSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRL 136 (394)
T ss_pred CCCcCC----CCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeE
Confidence 677764 778899999999999997653 1111222222477899999998753
Done!