Query 041306
Match_columns 118
No_of_seqs 150 out of 1300
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:32:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t7v_A Methylornithine synthas 99.7 7.8E-18 2.7E-22 133.8 7.7 92 2-95 209-341 (350)
2 1r30_A Biotin synthase; SAM ra 99.7 3.1E-16 1.1E-20 125.7 11.8 97 1-97 214-340 (369)
3 3iix_A Biotin synthetase, puta 99.5 1.5E-13 5.3E-18 107.9 9.4 93 1-95 198-337 (348)
4 2qgq_A Protein TM_1862; alpha- 97.7 4.6E-05 1.6E-09 59.4 5.5 51 2-54 162-214 (304)
5 1olt_A Oxygen-independent copr 96.6 0.0019 6.4E-08 53.1 4.6 62 2-65 211-278 (457)
6 3c8f_A Pyruvate formate-lyase 90.3 0.31 1E-05 34.9 4.2 56 4-61 172-237 (245)
7 2yx0_A Radical SAM enzyme; pre 87.2 0.33 1.1E-05 37.6 2.7 62 3-66 245-308 (342)
8 2z2u_A UPF0026 protein MJ0257; 85.1 0.34 1.2E-05 36.9 1.7 54 6-62 227-282 (311)
9 3can_A Pyruvate-formate lyase- 78.8 1.9 6.6E-05 30.0 3.6 58 4-63 104-174 (182)
10 1tv8_A MOAA, molybdenum cofact 68.6 7.6 0.00026 29.6 5.0 51 5-58 170-221 (340)
11 3rfa_A Ribosomal RNA large sub 53.9 21 0.0007 29.1 5.3 53 4-62 284-336 (404)
12 2a5h_A L-lysine 2,3-aminomutas 39.8 8.3 0.00028 31.1 0.8 57 4-65 264-320 (416)
13 1mzw_B U4/U6 snRNP 60KDA prote 29.9 40 0.0014 17.9 2.3 15 5-19 16-30 (31)
14 3ouv_A Serine/threonine protei 27.1 44 0.0015 19.7 2.5 21 74-94 14-34 (71)
15 3ff5_A PEX14P, peroxisomal bio 26.3 81 0.0028 18.8 3.5 33 55-87 11-53 (54)
16 2fi0_A Conserved domain protei 25.0 38 0.0013 21.1 1.9 21 73-93 58-78 (81)
17 2w84_A Peroxisomal membrane pr 23.1 44 0.0015 21.1 1.9 24 69-92 40-63 (70)
18 3dtg_A Branched-chain amino ac 20.3 32 0.0011 27.3 1.0 31 75-105 274-304 (372)
No 1
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.72 E-value=7.8e-18 Score=133.77 Aligned_cols=92 Identities=20% Similarity=0.401 Sum_probs=83.0
Q ss_pred eeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc-------------
Q 041306 2 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM------------- 68 (118)
Q Consensus 2 I~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~------------- 68 (118)
|+|+|||.+|+++++..+++++ +++++|+.|+|.+||||++.++++.++++|++|++|++||+..
T Consensus 209 i~Glget~e~~~~~l~~l~~l~--~~~v~~~~f~p~~gT~l~~~~~~~~~e~l~~ia~~Rl~lp~~~I~a~~~~~g~~~~ 286 (350)
T 3t7v_A 209 LTGVGNDIESTILSLRGMSTND--PDMVRVMTFLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKRLIPASLDLEGIDGM 286 (350)
T ss_dssp EESSSCCHHHHHHHHHHHHHTC--CSEEEEEECCCCTTSTTTTCCCCCCCCHHHHHHHHHHHSTTSBCEEEHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHhCC--CCEEEecceeeCCCCcCccCCCCChHHHHHHHHHHHHhCCCcCccccccccChhHH
Confidence 7999999999999999999996 9999999999999999999998999999999999999999975
Q ss_pred ----------------------CcccC------CCCCHHHHHHHHHHcCCCCCCC
Q 041306 69 ----------------------KLLTT------PNNNFVADQLMFKVLGLTPKAP 95 (118)
Q Consensus 69 ----------------------~yLTt------~g~~~~~d~~mI~~~G~~~~~r 95 (118)
|+-+. ...+.++.+++|+++||+|++|
T Consensus 287 ~~~l~~Gan~~~~~~~~~~~~ag~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~r 341 (350)
T 3t7v_A 287 VLRLNAGANIVTSILPPDSQLEGVANYDRDLEERDRDIKSVVRRLEIMGMKPARQ 341 (350)
T ss_dssp HHHHHTTCCEEEEECCSSCCCCCSSCTTTTCSSCCCCHHHHHHHHHHHTCEECCH
T ss_pred HHHHhcCCceecCCCCCCCCCCCCCCCcccchhccCCHHHHHHHHHHcCCccccH
Confidence 22211 1368999999999999999986
No 2
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.68 E-value=3.1e-16 Score=125.73 Aligned_cols=97 Identities=56% Similarity=0.883 Sum_probs=89.0
Q ss_pred CeeecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc------------
Q 041306 1 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM------------ 68 (118)
Q Consensus 1 gI~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~------------ 68 (118)
.|+|+|||.+|+.+++..+++|+.++++++++.|+|.+||||.+.++++.++++++++++|++||+..
T Consensus 214 ~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~r~~l~~~~i~i~~~~~~l~~ 293 (369)
T 1r30_A 214 GIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNE 293 (369)
T ss_dssp EEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSGGGSCH
T ss_pred eEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHHHHHHHHHHhCCCCceEeecchhhcCh
Confidence 38999999999999999999996448899999999999999999888999999999999999999843
Q ss_pred ------------------CcccCCCCCHHHHHHHHHHcCCCCCCCCC
Q 041306 69 ------------------KLLTTPNNNFVADQLMFKVLGLTPKAPSF 97 (118)
Q Consensus 69 ------------------~yLTt~g~~~~~d~~mI~~~G~~~~~r~~ 97 (118)
.|+|+.|.+.+++++||+++|+.|..|..
T Consensus 294 ~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~~g~~~~~~~~ 340 (369)
T 1r30_A 294 QTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAV 340 (369)
T ss_dssp HHHHHHHHHTCCEEECSSBSSSSBCCCHHHHHHHHHHTTCCSCCCC-
T ss_pred HHHHHHhhCCCceEEeCCeeeCCCCCCHHHHHHHHHHcCCCeecccc
Confidence 47899999999999999999999998764
No 3
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.47 E-value=1.5e-13 Score=107.94 Aligned_cols=93 Identities=25% Similarity=0.354 Sum_probs=80.3
Q ss_pred Ceeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcc-----------
Q 041306 1 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM----------- 68 (118)
Q Consensus 1 gI~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP~~~----------- 68 (118)
.|+|+ |||.+++.+++..+++++ +++++|+.|+|.+||||.+.++.+.+++++++|++|+++|+..
T Consensus 198 ~i~G~p~et~e~~~~~~~~l~~l~--~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~~~a~~R~~lp~~~i~~~~~~~~~~ 275 (348)
T 3iix_A 198 SMVGLPGQTIDDLVDDLLFLKEHD--FDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIV 275 (348)
T ss_dssp BEESCTTCCHHHHHHHHHHHHHHT--CSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHHHHSTTSBCBCCHHHHHHS
T ss_pred eEEeCCCCCHHHHHHHHHHHHhcC--CCEEeeeeeecCCCCCcccCCCCCHHHHHHHHHHHHHHCCCCCchhcchhhhcC
Confidence 37999 999999999999999996 9999999999999999999999999999999999999999854
Q ss_pred --------------------------CcccCCC---------CCHHHHHHHHHHcCCCCCCC
Q 041306 69 --------------------------KLLTTPN---------NNFVADQLMFKVLGLTPKAP 95 (118)
Q Consensus 69 --------------------------~yLTt~g---------~~~~~d~~mI~~~G~~~~~r 95 (118)
+|....+ .+.++..++|+++|+.|...
T Consensus 276 ~~~~~~~l~~Gan~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 337 (348)
T 3iix_A 276 PGGREITLRCGANVIMPNWTPSPYRQLYQLYPGKICVFEKDTACIPCVMKMIELLGRKPGRD 337 (348)
T ss_dssp TTHHHHHHTTTCCEECCBCCCTTTGGGCCSSSCCTTTTSCTTCHHHHHHHHHHHTTCEECSS
T ss_pred HHHHHHHHhcCCcEEeCCCCchhcccccccCCCCcccCCCchhhHHHHHHHHHHcCCEeCCC
Confidence 1221122 46788899999999998753
No 4
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=97.70 E-value=4.6e-05 Score=59.45 Aligned_cols=51 Identities=24% Similarity=0.205 Sum_probs=35.7
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCC-CCCHHHHH
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMI 54 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~-~~s~~e~l 54 (118)
|+|+ |||.+|..+.+..+++++ ++.+.++.|.|.||||+...+ .++.+...
T Consensus 162 IvG~PgEt~ed~~~t~~~l~~l~--~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~ 214 (304)
T 2qgq_A 162 IVGFPGETEEDFEELKQFVEEIQ--FDKLGAFVYSDEEGTVAFNLKEKVDPEMAK 214 (304)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHC--CSEEEEEECCC-----------CCCHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHcC--CCEEEEEEeeCCCCChhHhCcCCCCHHHHH
Confidence 7899 999999999999999996 899999999999999998876 56655433
No 5
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=96.62 E-value=0.0019 Score=53.07 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=51.1
Q ss_pred eeec-CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCC-----CCCCCHHHHHHHHHHHHHhCC
Q 041306 2 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-----QKPVEIWEMIRMIATARIVMP 65 (118)
Q Consensus 2 I~Gl-GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~-----~~~~s~~e~lR~iAvaRl~lP 65 (118)
|+|+ |||.++..+.+..+.+++ ++.+.+..|+|.|||++.. ...++.++.+++...++-.+.
T Consensus 211 I~GlPget~e~~~~tl~~~~~l~--~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~ 278 (457)
T 1olt_A 211 IYGLPKQTPESFAFTLKRVAELN--PDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLT 278 (457)
T ss_dssp EESCTTCCHHHHHHHHHHHHHHC--CSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCCHHHHHHHHHHHHhcC--cCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHH
Confidence 7899 999999999999999996 9999999999999998653 124577777777776655553
No 6
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=90.33 E-value=0.31 Score=34.90 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=41.0
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCC-CcccccccccCCCC---------CCCCCCCCCHHHHHHHHHHHH
Q 041306 4 GLGEAEEDRVGLLHTLATLPTHP-ESVPINALLAVKGT---------PLQDQKPVEIWEMIRMIATAR 61 (118)
Q Consensus 4 GlGET~edrve~l~~Lr~L~~~~-~svpin~fiP~~gT---------ple~~~~~s~~e~lR~iAvaR 61 (118)
|++++.++..+.+..+++++ + ..+-+..|.|.+++ ++.+.++++.+++.++...+|
T Consensus 172 g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (245)
T 3c8f_A 172 GWSDDDDSAHRLGEFTRDMG--NVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILE 237 (245)
T ss_dssp TTTCCHHHHHHHHHHHHHHC--CEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcC--CCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHHHHH
Confidence 45678899999999999995 4 67777778886544 455556678887777766665
No 7
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=87.25 E-value=0.33 Score=37.63 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=44.2
Q ss_pred eecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCC--CCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 041306 3 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG--TPLQDQKPVEIWEMIRMIATARIVMPK 66 (118)
Q Consensus 3 ~GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~g--Tple~~~~~s~~e~lR~iAvaRl~lP~ 66 (118)
+.-|++.++..+++..+++++ ++.+-+.+|+|.++ +++.....++.+++.+....++-.+|+
T Consensus 245 l~~g~n~~~~~~l~~~l~~~~--~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~l~~ 308 (342)
T 2yx0_A 245 LVKGENMHSPEKYAKLILKAR--PMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKHLPG 308 (342)
T ss_dssp ECTTTTCCCHHHHHHHHHHHC--CSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTTCTT
T ss_pred EECCccHHHHHHHHHHHHHcC--CCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHhccC
Confidence 444777777777888888885 78887777777543 566555577899999999999888865
No 8
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=85.11 E-value=0.34 Score=36.86 Aligned_cols=54 Identities=9% Similarity=0.157 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCC--CCCCCCCCHHHHHHHHHHHHH
Q 041306 6 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP--LQDQKPVEIWEMIRMIATARI 62 (118)
Q Consensus 6 GET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTp--le~~~~~s~~e~lR~iAvaRl 62 (118)
|++. |..+++..+++++ ++.+.++.|+|.++++ +.....++.+++++.+..++-
T Consensus 227 g~n~-~~~~~~~~~~~~~--~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~~~~l~~ 282 (311)
T 2z2u_A 227 GYND-DILKFVELYERAD--VHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKMLDE 282 (311)
T ss_dssp TTTC-CGGGTHHHHHHHT--CSEEEEEECC------------CCCCHHHHHHHHHHHHT
T ss_pred Ccch-hHHHHHHHHHHcC--CCEEEEEeeEEccccccccccccCCCHHHHHHHHHHHHH
Confidence 5555 6666777777885 8899999999988876 333456788888887776664
No 9
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=78.81 E-value=1.9 Score=29.98 Aligned_cols=58 Identities=16% Similarity=0.012 Sum_probs=36.0
Q ss_pred ecCCCHHHHHHHHHHHhcC-CCCC-CcccccccccCCCC---------CCCCCCCCCHHH--HHHHHHHHHHh
Q 041306 4 GLGEAEEDRVGLLHTLATL-PTHP-ESVPINALLAVKGT---------PLQDQKPVEIWE--MIRMIATARIV 63 (118)
Q Consensus 4 GlGET~edrve~l~~Lr~L-~~~~-~svpin~fiP~~gT---------ple~~~~~s~~e--~lR~iAvaRl~ 63 (118)
|+..+.++..+++..++++ + + ..+-++.|.|.... +|.+.++++.++ +.+....+|-.
T Consensus 104 ~~n~n~~~~~~~~~~~~~~~g--~~~~~~l~~~~p~g~~~~~~l~~~y~~~~~~~~~~e~~~l~~~~~~~~~~ 174 (182)
T 3can_A 104 GVNADEKNIKLSAEFLASLPR--HPEIINLLPYHDIGKGKHAKLGSIYNPKGYKMQTPSEEVQQQCIQILTDY 174 (182)
T ss_dssp TTTCSHHHHHHHHHHHHHSSS--CCSEEEEEECCC------------------CCBCCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhCcC--ccceEEEecCcccCHHHHHHhCCcCcccCCCCCCHHHHHHHHHHHHHHHc
Confidence 4457788888889999998 6 5 77888888886543 355555566655 66666666643
No 10
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=68.58 E-value=7.6 Score=29.64 Aligned_cols=51 Identities=20% Similarity=0.153 Sum_probs=39.3
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCC-CCCCCCHHHHHHHHH
Q 041306 5 LGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ-DQKPVEIWEMIRMIA 58 (118)
Q Consensus 5 lGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple-~~~~~s~~e~lR~iA 58 (118)
-|++.++..+++..+++++ ++ +.+..|+|..+++.. ....++.+++++.++
T Consensus 170 ~g~n~~ei~~~~~~~~~~g--~~-~~~i~~~p~~~~~~~~~~~~~~~~e~~~~l~ 221 (340)
T 1tv8_A 170 KGINDDQIIPMLEYFKDKH--IE-IRFIEFMDVGNDNGWDFSKVVTKDEMLTMIE 221 (340)
T ss_dssp TTTTGGGHHHHHHHHHHTT--CC-EEEEECCCBCSSSSBCCSSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcC--Ce-EEEEEeeEcCCCccchhhcCCCHHHHHHHHH
Confidence 3788999999999999996 44 667778999888642 234578888888765
No 11
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=53.89 E-value=21 Score=29.12 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=37.5
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 041306 4 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 62 (118)
Q Consensus 4 GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl 62 (118)
|+..+.+|..+++..+++++ ..|-+..|+|+++++ .++++.+++.+...+++-
T Consensus 284 GvNDs~e~~~~La~ll~~l~---~~VnLIpynP~~~~~---~~~ps~e~i~~f~~iL~~ 336 (404)
T 3rfa_A 284 HVNDGTEHAHQLAELLKDTP---CKINLIPWNPFPGAP---YGRSSNSRIDRFSKVLMS 336 (404)
T ss_dssp TTTCSHHHHHHHHHHTTTSC---EEEEEEECCCCTTCC---CCBCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCC---CcEEEEeccCCCCCC---CCCCCHHHHHHHHHHHHH
Confidence 67889999999999999984 344445677877654 456677777666555554
No 12
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=39.83 E-value=8.3 Score=31.08 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=38.6
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 041306 4 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMP 65 (118)
Q Consensus 4 GlGET~edrve~l~~Lr~L~~~~~svpin~fiP~~gTple~~~~~s~~e~lR~iAvaRl~lP 65 (118)
|+.++.++..+++..+++++ +....++.+-+.+||+... .+..+...++..+|-.++
T Consensus 264 GvNd~~e~l~~l~~~l~~lg--v~~~~i~~~~~~~g~~~~~---~~~~~~~eil~~l~~~~~ 320 (416)
T 2a5h_A 264 GVNDCVHVMKELVNKLVKIR--VRPYYIYQCDLSLGLEHFR---TPVSKGIEIIEGLRGHTS 320 (416)
T ss_dssp TTTCSHHHHHHHHHHHHHTT--EEEEEEECCCCBTTCGGGC---CCHHHHHHHHHTTBTTBC
T ss_pred CCCCCHHHHHHHHHHHHHcC--CceEEEeecCCCCCccccc---CCcccHHHHHHHHHHHCC
Confidence 77889999999999999996 5555555554568887433 345555566555554433
No 13
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=29.93 E-value=40 Score=17.90 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=12.1
Q ss_pred cCCCHHHHHHHHHHH
Q 041306 5 LGEAEEDRVGLLHTL 19 (118)
Q Consensus 5 lGET~edrve~l~~L 19 (118)
+||+..||.+-+..|
T Consensus 16 FGE~~~~Rr~RLr~l 30 (31)
T 1mzw_B 16 FGEGPAERRERLRNI 30 (31)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHh
Confidence 599999998876654
No 14
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=27.10 E-value=44 Score=19.71 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCC
Q 041306 74 PNNNFVADQLMFKVLGLTPKA 94 (118)
Q Consensus 74 ~g~~~~~d~~mI~~~G~~~~~ 94 (118)
.|++.++..+.|+++||.+..
T Consensus 14 ~G~~~~~A~~~L~~~Gl~~~~ 34 (71)
T 3ouv_A 14 AGQTVDVAQKNMNVYGFTKFS 34 (71)
T ss_dssp TTCBHHHHHHHHHHTTCCCEE
T ss_pred CCCCHHHHHHHHHHCCCeEEE
Confidence 478999999999999998753
No 15
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=26.30 E-value=81 Score=18.78 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=22.3
Q ss_pred HHHHHHHHhC--CCcc--------CcccCCCCCHHHHHHHHHH
Q 041306 55 RMIATARIVM--PKAM--------KLLTTPNNNFVADQLMFKV 87 (118)
Q Consensus 55 R~iAvaRl~l--P~~~--------~yLTt~g~~~~~d~~mI~~ 87 (118)
.+|+.|+-+| |++. -||-++|.+.+++-.++++
T Consensus 11 ~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 11 PLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3455555555 6655 7777888888887777764
No 16
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=25.00 E-value=38 Score=21.07 Aligned_cols=21 Identities=5% Similarity=-0.122 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHcCCCCC
Q 041306 73 TPNNNFVADQLMFKVLGLTPK 93 (118)
Q Consensus 73 t~g~~~~~d~~mI~~~G~~~~ 93 (118)
..|.+.+..++.|+++||++.
T Consensus 58 ~~gid~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 58 LAGTPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp HHTCCHHHHHHHHHHTTCEEE
T ss_pred HcCCCHHHHHHHHHHcCCEee
Confidence 456899999999999999875
No 17
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=23.06 E-value=44 Score=21.09 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=21.1
Q ss_pred CcccCCCCCHHHHHHHHHHcCCCC
Q 041306 69 KLLTTPNNNFVADQLMFKVLGLTP 92 (118)
Q Consensus 69 ~yLTt~g~~~~~d~~mI~~~G~~~ 92 (118)
-||-.+|.+.+++-.+++++|-..
T Consensus 40 ~FL~sKGLt~eEI~~Al~ra~~~~ 63 (70)
T 2w84_A 40 AFLKKKGLTDEEIDMAFQQSGTAA 63 (70)
T ss_dssp HHHHHTTCCHHHHHHHHHHHTCCC
T ss_pred HHHHHcCCCHHHHHHHHHHccCCC
Confidence 889999999999999999988644
No 18
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=20.33 E-value=32 Score=27.34 Aligned_cols=31 Identities=10% Similarity=-0.067 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCCcchhhhhh
Q 041306 75 NNNFVADQLMFKVLGLTPKAPSFHEDEANVS 105 (118)
Q Consensus 75 g~~~~~d~~mI~~~G~~~~~r~~~~~~~~~~ 105 (118)
|.+.+..+++.+++|+++.+|.+..+|-..+
T Consensus 274 GITR~sVi~LA~~~Gi~V~Er~it~~El~~A 304 (372)
T 3dtg_A 274 GITRDSLLQLATDAGFAVEERKIDVDEWQKK 304 (372)
T ss_dssp CHHHHHHHHHHHHHTCEEEECCCBHHHHHHH
T ss_pred cHHHHHHHHHHHHCCceEEEEeCCHHHHHHH
Confidence 5689999999999999999999998886544
Done!