BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041308
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 130/226 (57%), Gaps = 7/226 (3%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +AVLD I PF K +G A+ Y+G P+ N + K MS M +L+ Y
Sbjct: 137 MESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETY 195
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+K LVDVGG G + I+ K+ I +GINFDLP V+ APS P V H+GGDMF
Sbjct: 196 TGFEGLKSLVDVGGGTGAVINTIVSKYPTI-KGINFDLPHVIEDAPSYPGVEHVGGDMFV 254
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
SI DA+FMKW+ W+D+ C ++N Y+AL K+I E +LP + S T+ ++
Sbjct: 255 SIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVV 314
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP----HLRAFISIIF 222
D+ +M + GK +T++EF+ L GF H AF + I
Sbjct: 315 HIDV-IMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 359
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 131/226 (57%), Gaps = 11/226 (4%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
+ W EAV+D I+ F VHG Y + GK KMN + K+M V M +L+ Y
Sbjct: 145 LQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIY 204
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+ LVDVGG +G L +I+ K+ I +GINFDLP+V+ AP + + H+GGDMF
Sbjct: 205 TGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQVIENAPPLSGIEHVGGDMFA 263
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTR--A 178
S+ DA+ +K V W+D++C + N +KAL K+I E +LP++ N S+ ++ +
Sbjct: 264 SVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVS 323
Query: 179 LLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHL----RAFISI 220
L+ +F+ G+ +TE+++++L +GF RAF S+
Sbjct: 324 TLDNLMFIT----VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSL 365
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 122/216 (56%), Gaps = 3/216 (1%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
M +W + +AVLD I PF K +G A+ Y+G P+ N + + M + +L+ Y
Sbjct: 138 MESWYYLKDAVLDGGI-PFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELY 196
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+ LVDVGG G + I H +G+NFDLP V+++AP P VTH+GGDMFK
Sbjct: 197 HGFEGLGTLVDVGGGVGATVAAI-AAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFK 255
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
+ D I MKW+L W+D C +++N Y AL A K++ + +LP + + ++ +
Sbjct: 256 EVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVF 315
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRA 216
D+ +M + G+ + E+EF+ L GF +++
Sbjct: 316 HVDM-IMLAHNPGGRERYEREFQALARGAGFTGVKS 350
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 120/211 (56%), Gaps = 3/211 (1%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
+ W + +A+L+ I PF K +G + Y+G ++N + K MS M +L+ Y
Sbjct: 140 LEPWFYLKDAILEGGI-PFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMY 198
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
+GF+G+ +VDVGG G +I+ K+ I INFDLP V+ AP+ V H+GGDMF
Sbjct: 199 NGFEGLTTIVDVGGGTGAVASMIVAKYPSI-NAINFDLPHVIQDAPAFSGVEHLGGDMFD 257
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
+ DAIF+KW+ W+D+ C +++N Y AL K+I E +LP + S T+ ++
Sbjct: 258 GVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVI 317
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211
D +M Y GK +TE+EF+ L ++GF
Sbjct: 318 HTDA-LMLAYNPGGKERTEKEFQALAMASGF 347
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 7/224 (3%)
Query: 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY 60
+ W EAV+D I+ F VHG Y + GK K N + K+ V L+ Y
Sbjct: 145 LQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIY 204
Query: 61 DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK 120
GF+G+ LVDVGG +G L +I+ K+ I +GINFDLP+V+ AP + + H+GGD F
Sbjct: 205 TGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQVIENAPPLSGIEHVGGDXFA 263
Query: 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180
S+ DA +K V W+D++C + N +KAL K+I E +LP++ N S+ ++ L
Sbjct: 264 SVPQGDAXILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESK--L 321
Query: 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHL----RAFISI 220
+ + G+ +TE+++++L +GF RAF S+
Sbjct: 322 VSTLDNLXFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSL 365
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 29/241 (12%)
Query: 5 PLVHEAVLDPTIEP----------------FAKVHGEPAYSYYGKKPKMNGLMRKAMSRV 48
P+V E VLDPT+ F G + + K P+ N AM+
Sbjct: 113 PMV-ECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASD 171
Query: 49 FVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI 108
++ D F G++ +VDVGG G +II + + + I FD P+VV
Sbjct: 172 SKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKL-KCIVFDRPQVVENLSGS 230
Query: 109 PEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLA-GR--KLIACEPV 165
+T++GGDMF SI DA+ +K++L WTD +C I++ +A+ G+ K+ + V
Sbjct: 231 NNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 290
Query: 166 LPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH-----LRAFISI 220
+ +E+Q T+ L D+ + + GK + E+E+K+L GF H L F+S+
Sbjct: 291 IDKKKDENQVTQIKLLMDVNMACL---NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL 347
Query: 221 I 221
I
Sbjct: 348 I 348
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 32/230 (13%)
Query: 5 PLVHEAVLDPTIEP----------------FAKVHGEPAYSYYGKKPKMNGLMRKAMSRV 48
P+V E VLDPT+ FA G + + K P+ N L A++
Sbjct: 118 PMV-ECVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASD 176
Query: 49 FVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK----HCFICEGINFDLPEVVAK 104
++ D F+G++ +VDVGG G +II + C + FD P+VV
Sbjct: 177 SKMINLAMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVV-----FDRPKVVEN 231
Query: 105 APSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLA-GR--KLIA 161
+T++GGDMF S+ DA+ +K VL WTD +C I++ +A+ + G+ K+I
Sbjct: 232 LCGSNNLTYVGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIV 291
Query: 162 CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211
+ V+ + +E+Q T+ L + +TI GK + E+E+K+L GF
Sbjct: 292 IDMVINEKKDENQLTQIKL---LMNVTISCVNGKERNEEEWKKLFIEAGF 338
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 36/241 (14%)
Query: 9 EAVLDPTIEP----------------FAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPF 52
E VLDPT+ F G + + K P+ N A +
Sbjct: 116 ECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLI 175
Query: 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK----HCFICEGINFDLPEVVAKAPSI 108
++ D F G++ +VDVGG G +II + C + FD P+VV
Sbjct: 176 NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIV-----FDRPQVVENLSGS 230
Query: 109 PEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLA-GR--KLIACEPV 165
+T++GGD F SI DA+ +K++L WTD +C I++ +A+ G+ K+ + V
Sbjct: 231 NNLTYVGGDXFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXV 290
Query: 166 LPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH-----LRAFISI 220
+ +E+Q T+ L D+ + GK + E+E+K+L GF H L F+S+
Sbjct: 291 IDKKKDENQVTQIKLLXDVNXACL---NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL 347
Query: 221 I 221
I
Sbjct: 348 I 348
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 103/193 (53%), Gaps = 8/193 (4%)
Query: 24 GEPAYSYYGKKPKMNGL--MRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81
GE + + K + + L + AM+ F + + F+G++ LVDVGG G +
Sbjct: 149 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 208
Query: 82 IILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDE 141
+I + + + FD P+VV + +GGDMFKSI DA+ +KWVL W D++
Sbjct: 209 LIHEIFPHLKCTV-FDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQ 267
Query: 142 CKLIMENYYKALL-AGR--KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKT 198
I++N +A+ G+ K+I + + + S++ T L+ D+ ++T++ GK +T
Sbjct: 268 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL--GKERT 325
Query: 199 EQEFKQLGFSTGF 211
+QE+++L + GF
Sbjct: 326 KQEWEKLIYDAGF 338
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 103/193 (53%), Gaps = 8/193 (4%)
Query: 24 GEPAYSYYGKKPKMNGL--MRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81
GE + + K + + L + AM+ F + + F+G++ LVDVGG G +
Sbjct: 146 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 205
Query: 82 IILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDE 141
+I + + + FD P+VV + +GGDMFKSI DA+ +KWVL W D++
Sbjct: 206 LIHEIFPHLKCTV-FDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQ 264
Query: 142 CKLIMENYYKALL-AGR--KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKT 198
I++N +A+ G+ K+I + + + S++ T L+ D+ ++T++ GK +T
Sbjct: 265 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL--GKERT 322
Query: 199 EQEFKQLGFSTGF 211
+QE+++L + GF
Sbjct: 323 KQEWEKLIYDAGF 335
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 103/193 (53%), Gaps = 8/193 (4%)
Query: 24 GEPAYSYYGKKPKMNGL--MRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81
GE + + K + + L + AM+ F + + F+G++ LVDVGG G +
Sbjct: 150 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 209
Query: 82 IILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDE 141
+I + + + FD P+VV + +GGDMFKSI DA+ +KWVL W D++
Sbjct: 210 LIHEIFPHLKCTV-FDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQ 268
Query: 142 CKLIMENYYKALL-AGR--KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKT 198
I++N +A+ G+ K+I + + + S++ T L+ D+ ++T++ GK +T
Sbjct: 269 SLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL--GKERT 326
Query: 199 EQEFKQLGFSTGF 211
+QE+++L + GF
Sbjct: 327 KQEWEKLIYDAGF 339
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 15/215 (6%)
Query: 4 WPLVHE--AVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYD 61
W H + L P FA + G +Y+ ++ L + V + D
Sbjct: 122 WTXSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGXETVSAAEHLILARAGD 181
Query: 62 GFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAP-SIPEVTH----IGG 116
F + DVGG G L +L++H + +G+ D EVVA+ P+V + G
Sbjct: 182 -FPATGTVADVGGGRGGFLLTVLREHPGL-QGVLLDRAEVVARHRLDAPDVAGRWKVVEG 239
Query: 117 DMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRT 176
D + + D +K +L W D++ I+ N + A +++ + V+P+ ++ Q
Sbjct: 240 DFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPEGNDAHQSK 299
Query: 177 RALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211
E D + G+ +T E + L + G
Sbjct: 300 ----EXDFXXLAAR--TGQERTAAELEPLFTAAGL 328
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 23/220 (10%)
Query: 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPF--MTSVLDG 59
+AW EA+L T F GE YSY + P AM + F + +LD
Sbjct: 108 AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRLLD- 165
Query: 60 YDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAP-------SIPEVT 112
F+G + VDVGG +G+ + ILQ G+ D + A + V+
Sbjct: 166 ---FRG-RSFVDVGGGSGELTKAILQAEPS-ARGVMLDREGSLGVARDNLSSLLAGERVS 220
Query: 113 HIGGDMFKSIHVVDAIFMKWVLTTWTDDECKL-IMENYYKALLAGRKLIACEPVLPDDSN 171
+GGDM + + I++ + D+ L ++ N +A+ +++ E + ++
Sbjct: 221 LVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS--AS 278
Query: 172 ESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211
E L + +F+ G+H+T +E L GF
Sbjct: 279 EPSPMSVLWDVHLFMA----CAGRHRTTEEVVDLLGRGGF 314
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 14/152 (9%)
Query: 19 FAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGD 78
F +G + + PK L +A V + V YD F G VD+GG G
Sbjct: 157 FDVANGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGS 215
Query: 79 CLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIG---------GDMFKSI-HVVDAI 128
+L + G + P V +A + +T G GD F++I D
Sbjct: 216 LXAAVLDAFPGL-RGTLLERPPVAEEAREL--LTGRGLADRCEILPGDFFETIPDGADVY 272
Query: 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLI 160
+K VL W DD+ I+ A +L+
Sbjct: 273 LIKHVLHDWDDDDVVRILRRIATAXKPDSRLL 304
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLP-------EVVAKAPSIPEVTHIG 115
GVK+++DVGG GD +L KH + +LP E A+ + I
Sbjct: 188 LDGVKKMIDVGGGIGDISAAML-KHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIA 246
Query: 116 GDMFK-SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSN 171
D++K S DA+ +L + + ++ + + A+ +G +L+ + V+ D N
Sbjct: 247 VDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN 303
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 114 IGGDMFKSI-HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNE 172
+ GD F+ + DAI + +VL W D + I+ +AL G +++ E DD +E
Sbjct: 238 VEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE---RDDLHE 294
Query: 173 SQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211
+ E D+ ++ G +T +++ L S G
Sbjct: 295 NSFNEQFTELDLRMLVFL--GGALRTREKWDGLAASAGL 331
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 22 VHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81
+H Y + +K + + + KA R ++P+ FKG +R++D+G G+ L
Sbjct: 8 IHTSDYYFLFEEKFRGSRELVKARLRRYIPY----------FKGCRRVLDIGCGRGEFLE 57
Query: 82 IILQKHCFICEGINFDLPEVVAK 104
+ ++ E I D+ E + K
Sbjct: 58 LCKEEG---IESIGVDINEDMIK 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,596,482
Number of Sequences: 62578
Number of extensions: 311106
Number of successful extensions: 618
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 19
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)