Query 041308
Match_columns 244
No_of_seqs 137 out of 1875
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:52:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 7.6E-38 1.7E-42 257.8 12.7 201 2-207 38-241 (241)
2 KOG3178 Hydroxyindole-O-methyl 100.0 5.2E-33 1.1E-37 231.9 16.8 226 1-229 114-341 (342)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 7.7E-27 1.7E-31 198.7 18.2 201 3-216 95-304 (306)
4 COG2226 UbiE Methylase involve 99.9 1.6E-21 3.4E-26 157.9 16.3 172 52-230 39-237 (238)
5 PF01209 Ubie_methyltran: ubiE 99.9 4.1E-22 8.8E-27 162.6 6.4 165 52-223 35-225 (233)
6 PLN02233 ubiquinone biosynthes 99.9 2.9E-20 6.4E-25 154.6 17.4 160 63-228 71-259 (261)
7 TIGR00740 methyltransferase, p 99.8 6.6E-21 1.4E-25 156.8 9.3 150 64-216 52-225 (239)
8 PRK15451 tRNA cmo(5)U34 methyl 99.8 5.4E-20 1.2E-24 152.0 13.5 178 34-216 21-228 (247)
9 TIGR02752 MenG_heptapren 2-hep 99.8 1.8E-19 3.9E-24 147.5 16.4 170 53-230 34-231 (231)
10 PTZ00098 phosphoethanolamine N 99.8 1.7E-19 3.7E-24 150.2 16.1 156 53-220 41-204 (263)
11 PRK14103 trans-aconitate 2-met 99.8 3.8E-19 8.2E-24 147.7 16.3 171 40-217 6-183 (255)
12 PLN02244 tocopherol O-methyltr 99.8 1.2E-18 2.5E-23 150.3 15.1 161 53-220 102-280 (340)
13 PLN02490 MPBQ/MSBQ methyltrans 99.8 9E-19 2E-23 149.5 11.5 149 55-221 103-259 (340)
14 PLN02336 phosphoethanolamine N 99.8 4.9E-18 1.1E-22 153.0 15.8 153 54-221 256-417 (475)
15 KOG1540 Ubiquinone biosynthesi 99.8 1E-17 2.2E-22 134.0 14.5 164 53-221 89-285 (296)
16 PRK00216 ubiE ubiquinone/menaq 99.8 4.3E-17 9.4E-22 133.6 17.6 172 53-231 40-239 (239)
17 PRK11207 tellurite resistance 99.7 3.5E-17 7.6E-22 130.7 13.4 142 54-218 20-170 (197)
18 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 7E-17 1.5E-21 131.0 15.4 170 54-230 29-223 (223)
19 PF02353 CMAS: Mycolic acid cy 99.7 1E-17 2.2E-22 139.7 10.3 163 53-222 51-221 (273)
20 PRK15068 tRNA mo(5)U34 methylt 99.7 2.2E-17 4.7E-22 141.2 12.4 164 56-235 114-288 (322)
21 smart00828 PKS_MT Methyltransf 99.7 2.2E-17 4.8E-22 134.4 11.8 139 67-223 1-149 (224)
22 PF12847 Methyltransf_18: Meth 99.7 1.5E-17 3.2E-22 120.7 9.2 98 65-163 1-111 (112)
23 PRK01683 trans-aconitate 2-met 99.7 1.8E-16 3.9E-21 131.9 17.0 154 53-213 20-182 (258)
24 PF13489 Methyltransf_23: Meth 99.7 3.3E-17 7.1E-22 126.2 11.5 137 63-215 20-160 (161)
25 TIGR00452 methyltransferase, p 99.7 3.4E-17 7.5E-22 138.7 12.4 167 55-236 112-288 (314)
26 PRK11036 putative S-adenosyl-L 99.7 4.8E-17 1E-21 135.1 12.4 162 55-226 36-215 (255)
27 PRK08317 hypothetical protein; 99.7 1E-16 2.3E-21 131.2 13.8 158 55-220 10-178 (241)
28 PLN02396 hexaprenyldihydroxybe 99.7 4E-17 8.7E-22 138.9 11.3 146 65-220 131-291 (322)
29 PRK11873 arsM arsenite S-adeno 99.7 1.3E-16 2.8E-21 133.7 14.2 145 63-218 75-230 (272)
30 KOG4300 Predicted methyltransf 99.7 1.2E-16 2.6E-21 124.1 10.5 181 36-226 48-240 (252)
31 PF13847 Methyltransf_31: Meth 99.7 1.6E-17 3.5E-22 127.3 5.7 137 64-210 2-152 (152)
32 COG2230 Cfa Cyclopropane fatty 99.7 1.7E-16 3.7E-21 131.0 11.5 159 53-222 61-227 (283)
33 TIGR00477 tehB tellurite resis 99.7 3.9E-16 8.6E-21 124.5 13.0 142 55-219 21-170 (195)
34 TIGR02021 BchM-ChlM magnesium 99.7 6.6E-16 1.4E-20 125.4 13.2 182 28-220 17-208 (219)
35 PRK10258 biotin biosynthesis p 99.7 1.8E-15 3.8E-20 125.4 14.9 163 37-213 9-182 (251)
36 PLN02336 phosphoethanolamine N 99.7 1E-15 2.2E-20 138.0 13.9 149 49-216 22-180 (475)
37 PRK06922 hypothetical protein; 99.7 6.1E-16 1.3E-20 140.1 11.9 142 26-169 378-543 (677)
38 PRK05785 hypothetical protein; 99.7 2.2E-15 4.7E-20 122.8 14.0 153 65-230 51-224 (226)
39 PRK04266 fibrillarin; Provisio 99.7 5.6E-15 1.2E-19 120.0 15.7 142 59-229 67-224 (226)
40 PF08241 Methyltransf_11: Meth 99.7 2.3E-16 5E-21 110.5 6.6 88 70-161 1-95 (95)
41 smart00138 MeTrc Methyltransfe 99.7 3.1E-15 6.7E-20 124.6 14.4 100 64-164 98-243 (264)
42 PRK06202 hypothetical protein; 99.6 2.3E-15 4.9E-20 123.4 12.7 149 63-220 58-224 (232)
43 PRK12335 tellurite resistance 99.6 3.4E-15 7.3E-20 126.1 13.6 139 56-217 112-258 (287)
44 PRK11705 cyclopropane fatty ac 99.6 3.5E-15 7.6E-20 130.3 13.5 156 54-222 157-316 (383)
45 PF08242 Methyltransf_12: Meth 99.6 1.1E-16 2.4E-21 113.7 2.9 87 70-159 1-99 (99)
46 TIGR03587 Pse_Me-ase pseudamin 99.6 4.1E-15 9E-20 119.2 10.8 103 63-168 41-147 (204)
47 TIGR02072 BioC biotin biosynth 99.6 9.6E-15 2.1E-19 119.6 13.3 137 66-219 35-177 (240)
48 KOG1270 Methyltransferases [Co 99.6 1.2E-15 2.7E-20 122.8 7.6 144 66-219 90-250 (282)
49 PRK08287 cobalt-precorrin-6Y C 99.6 1.5E-14 3.3E-19 114.6 13.3 127 56-219 23-157 (187)
50 COG4106 Tam Trans-aconitate me 99.6 2.6E-15 5.6E-20 117.6 8.5 119 40-163 7-129 (257)
51 PF06080 DUF938: Protein of un 99.6 1.2E-14 2.5E-19 114.6 12.1 177 47-230 9-204 (204)
52 PRK07580 Mg-protoporphyrin IX 99.6 3.3E-14 7.2E-19 116.1 14.3 150 63-222 61-218 (230)
53 PF13649 Methyltransf_25: Meth 99.6 2.7E-15 5.8E-20 107.0 6.1 88 69-157 1-101 (101)
54 TIGR03438 probable methyltrans 99.6 7.4E-14 1.6E-18 118.6 15.3 97 64-161 62-175 (301)
55 COG2227 UbiG 2-polyprenyl-3-me 99.6 5.6E-15 1.2E-19 118.2 7.2 145 65-220 59-217 (243)
56 KOG2361 Predicted methyltransf 99.5 2.2E-14 4.7E-19 114.2 8.9 146 67-216 73-235 (264)
57 PF05891 Methyltransf_PK: AdoM 99.5 1.7E-14 3.6E-19 114.3 8.1 137 65-218 55-201 (218)
58 TIGR00537 hemK_rel_arch HemK-r 99.5 1.2E-13 2.7E-18 108.6 13.0 126 64-222 18-169 (179)
59 TIGR03840 TMPT_Se_Te thiopurin 99.5 2.9E-13 6.3E-18 109.1 14.3 133 63-219 32-188 (213)
60 PTZ00146 fibrillarin; Provisio 99.5 9.6E-13 2.1E-17 109.6 16.8 141 63-229 130-285 (293)
61 PLN02585 magnesium protoporphy 99.5 1.7E-13 3.7E-18 116.4 12.4 141 65-217 144-298 (315)
62 PRK00107 gidB 16S rRNA methylt 99.5 4.8E-13 1E-17 105.7 13.7 129 64-230 44-186 (187)
63 PRK15001 SAM-dependent 23S rib 99.5 1.6E-13 3.5E-18 119.0 11.4 108 54-163 218-340 (378)
64 PF03848 TehB: Tellurite resis 99.5 1E-13 2.2E-18 109.1 9.0 140 56-218 22-169 (192)
65 PRK05134 bifunctional 3-demeth 99.5 2.6E-13 5.6E-18 111.2 11.4 148 64-218 47-205 (233)
66 TIGR00138 gidB 16S rRNA methyl 99.5 7.8E-13 1.7E-17 104.1 12.4 91 66-163 43-142 (181)
67 PLN03075 nicotianamine synthas 99.5 2.7E-13 5.9E-18 113.2 9.6 98 64-163 122-233 (296)
68 TIGR01983 UbiG ubiquinone bios 99.5 3.7E-13 8.1E-18 109.5 10.2 147 65-219 45-204 (224)
69 TIGR02469 CbiT precorrin-6Y C5 99.5 3.6E-13 7.8E-18 99.0 9.1 100 56-162 11-121 (124)
70 PRK13255 thiopurine S-methyltr 99.5 2.1E-12 4.5E-17 104.5 14.2 133 63-219 35-191 (218)
71 PRK09489 rsmC 16S ribosomal RN 99.4 6.7E-13 1.5E-17 114.3 11.1 108 55-164 187-304 (342)
72 TIGR02081 metW methionine bios 99.4 1.1E-12 2.4E-17 104.6 10.8 143 64-221 12-170 (194)
73 TIGR03534 RF_mod_PrmC protein- 99.4 2.4E-12 5.1E-17 106.5 12.9 123 65-219 87-242 (251)
74 PF08003 Methyltransf_9: Prote 99.4 1.7E-12 3.8E-17 107.5 11.7 151 54-220 105-269 (315)
75 PRK09328 N5-glutamine S-adenos 99.4 3.5E-12 7.6E-17 107.0 13.5 135 63-229 106-274 (275)
76 PF05401 NodS: Nodulation prot 99.4 3.1E-13 6.8E-18 105.4 6.2 135 59-219 38-180 (201)
77 PF05175 MTS: Methyltransferas 99.4 1E-12 2.2E-17 102.6 8.5 99 65-164 31-141 (170)
78 PRK11188 rrmJ 23S rRNA methylt 99.4 5.1E-12 1.1E-16 101.8 12.0 105 55-164 41-166 (209)
79 PLN02232 ubiquinone biosynthes 99.4 1.9E-12 4.1E-17 100.0 8.1 126 94-222 1-151 (160)
80 PRK00121 trmB tRNA (guanine-N( 99.4 1.4E-12 3E-17 104.6 7.5 98 65-163 40-156 (202)
81 PRK00517 prmA ribosomal protei 99.4 1.3E-11 2.8E-16 102.2 13.4 122 64-227 118-247 (250)
82 PRK13944 protein-L-isoaspartat 99.4 3.5E-12 7.5E-17 102.5 9.7 100 54-163 62-173 (205)
83 TIGR00091 tRNA (guanine-N(7)-) 99.3 2.8E-12 6.1E-17 102.2 7.4 98 65-163 16-132 (194)
84 PRK11088 rrmA 23S rRNA methylt 99.3 5.2E-12 1.1E-16 105.9 9.0 90 65-164 85-182 (272)
85 PRK14968 putative methyltransf 99.3 5.3E-11 1.2E-15 94.0 14.2 122 64-218 22-173 (188)
86 PRK13942 protein-L-isoaspartat 99.3 8.2E-12 1.8E-16 100.9 9.6 101 53-163 65-176 (212)
87 TIGR03533 L3_gln_methyl protei 99.3 3.6E-11 7.8E-16 101.3 13.5 96 65-161 121-249 (284)
88 PF07021 MetW: Methionine bios 99.3 1.7E-11 3.6E-16 95.6 10.6 141 63-223 11-172 (193)
89 PRK14966 unknown domain/N5-glu 99.3 4.6E-11 1E-15 104.1 14.3 137 64-232 250-420 (423)
90 PRK00377 cbiT cobalt-precorrin 99.3 1.4E-11 3E-16 98.5 10.2 98 57-161 33-143 (198)
91 TIGR00080 pimt protein-L-isoas 99.3 1.5E-11 3.2E-16 99.6 9.9 100 53-162 66-176 (215)
92 PRK14967 putative methyltransf 99.3 4.6E-11 9.9E-16 97.3 12.8 102 63-166 34-162 (223)
93 PHA03411 putative methyltransf 99.3 2.7E-11 5.8E-16 100.0 11.4 124 65-213 64-209 (279)
94 TIGR00536 hemK_fam HemK family 99.3 6.5E-11 1.4E-15 99.8 13.7 131 67-229 116-281 (284)
95 COG2813 RsmC 16S RNA G1207 met 99.3 2.9E-11 6.4E-16 100.4 11.3 109 54-164 148-267 (300)
96 PF12147 Methyltransf_20: Puta 99.3 9E-11 1.9E-15 96.5 13.5 142 65-217 135-297 (311)
97 PRK07402 precorrin-6B methylas 99.3 2.1E-11 4.6E-16 97.3 9.0 101 56-164 32-143 (196)
98 PRK14121 tRNA (guanine-N(7)-)- 99.3 3.6E-11 7.9E-16 104.1 10.7 105 56-163 114-235 (390)
99 COG2242 CobL Precorrin-6B meth 99.2 5.5E-11 1.2E-15 92.1 9.4 98 56-161 26-133 (187)
100 COG4976 Predicted methyltransf 99.2 2.1E-11 4.6E-16 96.6 6.3 147 53-220 114-267 (287)
101 TIGR00406 prmA ribosomal prote 99.2 9.8E-11 2.1E-15 98.9 10.9 94 64-164 158-260 (288)
102 COG4123 Predicted O-methyltran 99.2 8.7E-11 1.9E-15 95.6 9.8 145 56-232 35-214 (248)
103 PRK11805 N5-glutamine S-adenos 99.2 5.8E-11 1.3E-15 101.0 9.1 94 67-161 135-261 (307)
104 TIGR00438 rrmJ cell division p 99.2 1.2E-10 2.6E-15 92.3 10.1 101 56-162 23-145 (188)
105 PRK01544 bifunctional N5-gluta 99.2 2.8E-10 6E-15 103.1 13.6 129 66-226 139-302 (506)
106 TIGR01177 conserved hypothetic 99.2 1.8E-10 3.9E-15 99.2 11.8 107 53-163 171-294 (329)
107 PRK04457 spermidine synthase; 99.2 4E-11 8.6E-16 99.8 7.5 97 64-162 65-176 (262)
108 TIGR03704 PrmC_rel_meth putati 99.2 4.7E-10 1E-14 92.9 13.6 123 65-219 86-241 (251)
109 cd02440 AdoMet_MTases S-adenos 99.2 3E-10 6.6E-15 79.7 9.5 92 68-162 1-103 (107)
110 PRK00312 pcm protein-L-isoaspa 99.2 2.1E-10 4.6E-15 92.6 9.6 97 55-163 69-175 (212)
111 PF04672 Methyltransf_19: S-ad 99.1 9E-11 2E-15 96.3 6.5 141 65-215 68-233 (267)
112 PRK01581 speE spermidine synth 99.1 6.5E-10 1.4E-14 95.2 12.0 140 64-230 149-313 (374)
113 PF13659 Methyltransf_26: Meth 99.1 4.6E-11 1E-15 87.1 4.3 95 67-163 2-115 (117)
114 PRK13256 thiopurine S-methyltr 99.1 7.6E-10 1.7E-14 89.6 11.8 100 63-165 41-165 (226)
115 COG2264 PrmA Ribosomal protein 99.1 1.2E-09 2.6E-14 91.3 12.1 125 64-225 161-295 (300)
116 PF05724 TPMT: Thiopurine S-me 99.1 2.9E-10 6.3E-15 91.9 7.9 139 55-218 28-190 (218)
117 PF06325 PrmA: Ribosomal prote 99.1 4.5E-10 9.7E-15 94.5 9.2 124 64-228 160-293 (295)
118 KOG2899 Predicted methyltransf 99.1 2E-09 4.3E-14 86.2 12.0 149 54-212 46-249 (288)
119 PRK00811 spermidine synthase; 99.1 3.2E-10 7E-15 95.5 7.8 98 64-162 75-190 (283)
120 KOG3010 Methyltransferase [Gen 99.1 3.7E-10 8E-15 90.3 7.5 115 38-161 9-135 (261)
121 PF01739 CheR: CheR methyltran 99.1 5.7E-10 1.2E-14 88.6 8.6 99 65-164 31-176 (196)
122 PRK03612 spermidine synthase; 99.1 1.3E-09 2.9E-14 99.1 11.5 98 64-163 296-415 (521)
123 COG2890 HemK Methylase of poly 99.1 5E-09 1.1E-13 88.0 13.6 130 68-229 113-275 (280)
124 PRK10611 chemotaxis methyltran 99.0 4E-09 8.7E-14 88.4 12.4 97 66-163 116-262 (287)
125 PRK13943 protein-L-isoaspartat 99.0 9.1E-10 2E-14 94.0 8.6 100 54-163 70-180 (322)
126 PF05148 Methyltransf_8: Hypot 99.0 7E-09 1.5E-13 81.8 12.3 147 28-218 31-185 (219)
127 PLN02366 spermidine synthase 99.0 1.7E-09 3.7E-14 91.8 9.0 98 64-162 90-205 (308)
128 COG2518 Pcm Protein-L-isoaspar 99.0 4.1E-09 8.9E-14 83.5 9.5 100 53-164 61-170 (209)
129 KOG1271 Methyltransferases [Ge 99.0 2.1E-09 4.6E-14 82.4 7.3 123 66-220 68-207 (227)
130 TIGR00417 speE spermidine synt 99.0 2.3E-09 5.1E-14 89.7 7.9 98 64-162 71-185 (270)
131 PRK10901 16S rRNA methyltransf 98.9 6E-09 1.3E-13 92.8 10.6 112 56-169 236-378 (427)
132 PF01135 PCMT: Protein-L-isoas 98.9 1.5E-09 3.1E-14 87.2 6.0 102 53-164 61-173 (209)
133 TIGR00563 rsmB ribosomal RNA s 98.9 4.7E-09 1E-13 93.5 9.1 113 55-169 229-374 (426)
134 PF05219 DREV: DREV methyltran 98.9 9.8E-09 2.1E-13 83.6 10.1 139 65-221 94-243 (265)
135 smart00650 rADc Ribosomal RNA 98.9 4.8E-09 1E-13 81.7 8.0 103 54-163 3-113 (169)
136 PRK14904 16S rRNA methyltransf 98.9 8.9E-09 1.9E-13 92.1 10.6 110 58-169 244-383 (445)
137 PLN02672 methionine S-methyltr 98.9 1.2E-08 2.5E-13 98.5 11.5 94 67-161 120-276 (1082)
138 PRK14901 16S rRNA methyltransf 98.9 8.1E-09 1.8E-13 92.1 9.3 113 55-169 243-390 (434)
139 PRK14902 16S rRNA methyltransf 98.9 1.3E-08 2.9E-13 91.1 10.7 111 56-168 242-384 (444)
140 PLN02781 Probable caffeoyl-CoA 98.9 1.2E-08 2.5E-13 83.7 8.8 97 63-165 66-180 (234)
141 KOG3045 Predicted RNA methylas 98.9 6.8E-08 1.5E-12 78.2 12.7 144 31-219 142-292 (325)
142 COG2519 GCD14 tRNA(1-methylade 98.8 2.7E-08 5.8E-13 80.7 10.1 124 34-167 61-199 (256)
143 PF03291 Pox_MCEL: mRNA cappin 98.8 1.9E-08 4E-13 86.3 9.3 96 65-162 62-185 (331)
144 PF02390 Methyltransf_4: Putat 98.8 6E-09 1.3E-13 82.9 5.6 92 67-164 19-134 (195)
145 COG1352 CheR Methylase of chem 98.8 1.9E-07 4E-12 77.5 14.1 99 65-164 96-242 (268)
146 KOG1541 Predicted protein carb 98.8 8.7E-09 1.9E-13 81.5 5.3 107 52-162 36-159 (270)
147 KOG1975 mRNA cap methyltransfe 98.8 1.1E-08 2.4E-13 85.1 6.0 104 55-162 109-236 (389)
148 PHA03412 putative methyltransf 98.8 3.4E-08 7.4E-13 79.9 8.6 94 66-161 50-160 (241)
149 TIGR00446 nop2p NOL1/NOP2/sun 98.8 3.9E-08 8.4E-13 82.1 9.2 109 59-169 66-205 (264)
150 PRK14903 16S rRNA methyltransf 98.8 4.7E-08 1E-12 87.1 9.8 112 56-169 229-372 (431)
151 PF08123 DOT1: Histone methyla 98.7 4.2E-08 9E-13 78.5 7.3 112 53-169 31-164 (205)
152 PF08704 GCD14: tRNA methyltra 98.7 5.6E-08 1.2E-12 79.8 8.1 128 54-220 30-173 (247)
153 COG3963 Phospholipid N-methylt 98.7 1.1E-07 2.4E-12 72.1 8.5 112 52-165 36-158 (194)
154 PRK13168 rumA 23S rRNA m(5)U19 98.7 8.3E-08 1.8E-12 85.9 8.3 100 52-161 285-398 (443)
155 KOG1500 Protein arginine N-met 98.7 1.5E-07 3.3E-12 78.8 9.1 92 67-160 179-279 (517)
156 PF09243 Rsm22: Mitochondrial 98.6 1.6E-07 3.5E-12 78.8 8.9 114 52-168 21-144 (274)
157 COG2521 Predicted archaeal met 98.6 3.1E-07 6.7E-12 73.4 9.3 132 63-219 132-278 (287)
158 TIGR00755 ksgA dimethyladenosi 98.6 2E-07 4.4E-12 77.3 8.7 90 53-151 18-116 (253)
159 PRK14896 ksgA 16S ribosomal RN 98.6 1.9E-07 4.1E-12 77.7 8.4 84 52-140 17-106 (258)
160 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 5.9E-08 1.3E-12 79.9 5.1 149 65-230 56-256 (256)
161 PF05185 PRMT5: PRMT5 arginine 98.6 7.6E-08 1.6E-12 85.7 5.8 126 27-160 152-294 (448)
162 PLN02823 spermine synthase 98.6 1.5E-07 3.3E-12 80.8 7.2 96 64-161 102-218 (336)
163 PRK11783 rlmL 23S rRNA m(2)G24 98.6 2.9E-07 6.3E-12 86.8 9.6 96 65-162 538-655 (702)
164 PRK10909 rsmD 16S rRNA m(2)G96 98.6 1.3E-07 2.8E-12 75.5 6.1 95 64-163 52-159 (199)
165 COG0220 Predicted S-adenosylme 98.6 1.7E-07 3.6E-12 76.1 6.8 96 67-163 50-164 (227)
166 PRK00274 ksgA 16S ribosomal RN 98.6 2.3E-07 4.9E-12 77.9 7.8 82 53-139 31-119 (272)
167 PRK11727 23S rRNA mA1618 methy 98.6 5.4E-07 1.2E-11 76.8 9.9 145 65-220 114-294 (321)
168 PF11968 DUF3321: Putative met 98.5 1.6E-06 3.4E-11 69.0 11.3 126 66-226 52-189 (219)
169 PLN02476 O-methyltransferase 98.5 4.4E-07 9.4E-12 75.7 8.1 98 63-166 116-231 (278)
170 TIGR00478 tly hemolysin TlyA f 98.5 3.1E-06 6.7E-11 68.9 12.7 138 53-220 63-219 (228)
171 PF01596 Methyltransf_3: O-met 98.5 8E-08 1.7E-12 77.0 3.4 97 64-166 44-158 (205)
172 COG0421 SpeE Spermidine syntha 98.5 5.1E-07 1.1E-11 75.6 7.9 97 64-162 75-189 (282)
173 PRK00536 speE spermidine synth 98.5 7.9E-07 1.7E-11 73.6 8.9 89 63-162 70-170 (262)
174 PRK15128 23S rRNA m(5)C1962 me 98.5 5.1E-07 1.1E-11 79.4 7.7 99 64-164 219-340 (396)
175 KOG2904 Predicted methyltransf 98.4 8.1E-07 1.8E-11 72.6 7.8 98 64-162 147-284 (328)
176 PTZ00338 dimethyladenosine tra 98.4 7.4E-07 1.6E-11 75.4 7.9 90 52-146 24-122 (294)
177 COG4122 Predicted O-methyltran 98.4 6.2E-07 1.3E-11 72.1 6.9 99 63-167 57-170 (219)
178 TIGR00479 rumA 23S rRNA (uraci 98.4 6.3E-07 1.4E-11 80.1 7.4 100 53-161 281-394 (431)
179 PRK04148 hypothetical protein; 98.4 2.4E-06 5.2E-11 63.3 8.5 99 54-164 6-110 (134)
180 KOG1331 Predicted methyltransf 98.4 8.3E-07 1.8E-11 73.1 6.5 104 53-164 36-144 (293)
181 KOG1499 Protein arginine N-met 98.4 7E-07 1.5E-11 75.6 5.7 93 66-160 61-164 (346)
182 KOG1661 Protein-L-isoaspartate 98.4 8.9E-07 1.9E-11 69.7 5.8 91 63-162 80-192 (237)
183 PF10294 Methyltransf_16: Puta 98.4 7.1E-07 1.5E-11 69.8 5.3 101 63-166 43-159 (173)
184 TIGR03439 methyl_EasF probable 98.3 3.2E-06 7E-11 72.1 9.6 109 54-166 68-201 (319)
185 COG2263 Predicted RNA methylas 98.3 1.6E-06 3.4E-11 67.4 6.6 68 65-134 45-118 (198)
186 PLN02589 caffeoyl-CoA O-methyl 98.3 1.6E-06 3.5E-11 71.4 6.6 93 63-161 77-188 (247)
187 PRK03522 rumB 23S rRNA methylu 98.3 1E-06 2.2E-11 75.4 5.7 89 65-161 173-272 (315)
188 PF07942 N2227: N2227-like pro 98.3 5.8E-05 1.3E-09 62.7 15.8 134 65-218 56-242 (270)
189 COG5459 Predicted rRNA methyla 98.3 6.6E-07 1.4E-11 75.5 4.2 111 56-167 105-229 (484)
190 PF01564 Spermine_synth: Sperm 98.3 4.8E-07 1E-11 74.7 3.4 99 64-163 75-191 (246)
191 KOG2940 Predicted methyltransf 98.2 2.7E-06 5.9E-11 67.9 6.4 143 64-218 71-227 (325)
192 COG4262 Predicted spermidine s 98.2 1.3E-05 2.9E-10 68.2 10.5 138 63-230 287-451 (508)
193 PRK01544 bifunctional N5-gluta 98.2 4E-06 8.8E-11 76.2 8.1 98 65-163 347-462 (506)
194 COG0293 FtsJ 23S rRNA methylas 98.2 1.2E-05 2.6E-10 63.8 9.6 115 45-164 25-160 (205)
195 TIGR00095 RNA methyltransferas 98.2 2.8E-06 6.1E-11 67.3 5.4 91 66-161 50-157 (189)
196 PF03141 Methyltransf_29: Puta 98.2 1.1E-06 2.4E-11 77.6 3.3 97 64-167 116-223 (506)
197 TIGR02085 meth_trns_rumB 23S r 98.2 2.3E-06 4.9E-11 75.0 5.1 89 65-161 233-332 (374)
198 PF01269 Fibrillarin: Fibrilla 98.2 4.3E-05 9.3E-10 61.2 11.4 139 63-229 71-226 (229)
199 COG1889 NOP1 Fibrillarin-like 98.1 0.00023 5E-09 56.0 14.8 143 62-230 73-229 (231)
200 KOG0820 Ribosomal RNA adenine 98.1 6.2E-06 1.3E-10 67.5 6.4 78 52-133 46-132 (315)
201 COG4798 Predicted methyltransf 98.1 2.7E-05 5.9E-10 60.7 9.1 146 56-219 40-206 (238)
202 PF01728 FtsJ: FtsJ-like methy 98.1 3.7E-06 8.1E-11 66.1 3.8 105 55-164 11-140 (181)
203 PF04816 DUF633: Family of unk 98.0 3.6E-05 7.9E-10 61.6 9.0 114 69-219 1-125 (205)
204 COG0030 KsgA Dimethyladenosine 98.0 3.5E-05 7.6E-10 63.5 8.2 91 52-147 18-117 (259)
205 PF02527 GidB: rRNA small subu 98.0 1.3E-05 2.9E-10 63.0 5.5 89 68-163 51-148 (184)
206 PRK00050 16S rRNA m(4)C1402 me 98.0 1.6E-05 3.5E-10 67.0 6.1 79 52-132 7-98 (296)
207 KOG3115 Methyltransferase-like 97.9 1.2E-05 2.6E-10 63.1 4.2 98 67-165 62-185 (249)
208 PRK11760 putative 23S rRNA C24 97.9 0.00036 7.7E-09 59.7 13.0 98 63-169 209-310 (357)
209 KOG2798 Putative trehalase [Ca 97.8 0.00024 5.3E-09 59.4 10.8 152 52-220 134-339 (369)
210 COG0500 SmtA SAM-dependent met 97.8 0.00022 4.7E-09 53.2 9.9 95 69-168 52-160 (257)
211 KOG3987 Uncharacterized conser 97.8 3.2E-06 6.9E-11 66.5 -0.3 145 65-220 112-262 (288)
212 TIGR02143 trmA_only tRNA (urac 97.8 2.5E-05 5.4E-10 67.9 4.6 51 67-120 199-256 (353)
213 PRK04338 N(2),N(2)-dimethylgua 97.8 3.4E-05 7.4E-10 67.7 4.9 90 66-162 58-157 (382)
214 PRK11933 yebU rRNA (cytosine-C 97.8 0.0002 4.3E-09 64.4 9.6 105 63-168 111-247 (470)
215 PF13679 Methyltransf_32: Meth 97.7 8.9E-05 1.9E-09 55.9 6.0 90 63-160 23-128 (141)
216 PRK05031 tRNA (uracil-5-)-meth 97.7 3.4E-05 7.4E-10 67.4 4.2 51 67-120 208-265 (362)
217 COG4076 Predicted RNA methylas 97.7 6.5E-05 1.4E-09 58.4 5.0 95 67-164 34-136 (252)
218 KOG3420 Predicted RNA methylas 97.7 4.1E-05 9E-10 57.0 3.8 69 64-134 47-124 (185)
219 KOG1269 SAM-dependent methyltr 97.7 4.6E-05 1E-09 66.1 4.5 142 64-216 109-265 (364)
220 PF01170 UPF0020: Putative RNA 97.7 0.00011 2.4E-09 57.7 5.9 106 55-161 19-149 (179)
221 PF02475 Met_10: Met-10+ like- 97.7 4.9E-05 1.1E-09 60.6 3.8 91 63-160 99-199 (200)
222 COG0357 GidB Predicted S-adeno 97.6 9.9E-05 2.2E-09 59.3 5.2 120 66-220 68-197 (215)
223 KOG3191 Predicted N6-DNA-methy 97.6 0.00023 4.9E-09 55.1 6.5 66 66-132 44-118 (209)
224 COG1189 Predicted rRNA methyla 97.6 0.0018 4E-08 52.4 11.7 149 55-220 69-226 (245)
225 COG1041 Predicted DNA modifica 97.5 0.00074 1.6E-08 57.7 9.7 99 63-164 195-311 (347)
226 KOG1709 Guanidinoacetate methy 97.5 0.00046 1E-08 54.9 7.6 118 44-167 82-210 (271)
227 PF00398 RrnaAD: Ribosomal RNA 97.5 0.00018 3.8E-09 60.1 5.7 96 52-156 18-124 (262)
228 TIGR00027 mthyl_TIGR00027 meth 97.5 0.00083 1.8E-08 55.9 9.2 158 52-216 69-248 (260)
229 PF02384 N6_Mtase: N-6 DNA Met 97.5 0.00017 3.6E-09 61.6 5.2 108 54-163 36-183 (311)
230 PRK11783 rlmL 23S rRNA m(2)G24 97.5 0.00082 1.8E-08 63.7 9.8 110 53-164 178-348 (702)
231 PF09445 Methyltransf_15: RNA 97.4 4.7E-05 1E-09 58.5 0.7 63 67-132 1-77 (163)
232 KOG4589 Cell division protein 97.4 0.0016 3.5E-08 50.7 8.7 104 56-165 60-186 (232)
233 PF03059 NAS: Nicotianamine sy 97.3 0.00049 1.1E-08 57.4 6.1 95 66-162 121-229 (276)
234 COG1092 Predicted SAM-dependen 97.3 0.00034 7.4E-09 61.2 5.3 98 66-165 218-338 (393)
235 KOG1663 O-methyltransferase [S 97.3 0.00089 1.9E-08 53.8 6.9 126 32-167 32-187 (237)
236 TIGR02987 met_A_Alw26 type II 97.3 0.00084 1.8E-08 61.6 7.8 68 65-133 31-121 (524)
237 PF13578 Methyltransf_24: Meth 97.3 0.00013 2.8E-09 52.0 1.8 90 70-163 1-105 (106)
238 COG3897 Predicted methyltransf 97.2 0.0033 7.2E-08 49.4 8.9 103 63-169 77-185 (218)
239 TIGR01444 fkbM_fam methyltrans 97.1 0.00049 1.1E-08 51.6 3.7 50 68-118 1-57 (143)
240 COG2384 Predicted SAM-dependen 97.1 0.0086 1.9E-07 48.0 10.5 118 65-219 16-144 (226)
241 TIGR00308 TRM1 tRNA(guanine-26 97.0 0.0013 2.8E-08 57.6 5.9 91 67-163 46-147 (374)
242 PF03602 Cons_hypoth95: Conser 97.0 0.00024 5.3E-09 55.9 1.2 94 65-162 42-152 (183)
243 COG3315 O-Methyltransferase in 97.0 0.0022 4.8E-08 54.4 6.5 150 64-217 91-263 (297)
244 KOG1562 Spermidine synthase [A 96.9 0.0012 2.6E-08 55.0 4.5 101 63-164 119-237 (337)
245 COG4301 Uncharacterized conser 96.9 0.0014 3E-08 53.3 4.2 99 63-162 76-192 (321)
246 KOG2915 tRNA(1-methyladenosine 96.8 0.0075 1.6E-07 49.8 7.9 117 41-166 78-213 (314)
247 PF04989 CmcI: Cephalosporin h 96.8 0.0036 7.7E-08 49.9 5.8 98 66-166 33-150 (206)
248 KOG3201 Uncharacterized conser 96.7 0.00075 1.6E-08 51.3 1.5 96 66-164 30-141 (201)
249 PF11312 DUF3115: Protein of u 96.6 0.0039 8.5E-08 52.6 5.5 98 66-164 87-243 (315)
250 PLN02668 indole-3-acetate carb 96.6 0.024 5.1E-07 49.7 10.4 126 41-167 36-241 (386)
251 PF10672 Methyltrans_SAM: S-ad 96.6 0.002 4.3E-08 54.2 3.6 98 65-164 123-239 (286)
252 COG4627 Uncharacterized protei 96.6 0.00066 1.4E-08 51.2 0.5 39 125-163 48-86 (185)
253 COG2265 TrmA SAM-dependent met 96.6 0.0034 7.3E-08 56.0 5.0 101 52-161 281-394 (432)
254 TIGR00006 S-adenosyl-methyltra 96.5 0.0057 1.2E-07 51.9 5.9 67 52-120 8-80 (305)
255 COG2520 Predicted methyltransf 96.5 0.0061 1.3E-07 52.4 5.9 98 64-169 187-295 (341)
256 COG0144 Sun tRNA and rRNA cyto 96.5 0.032 7E-07 48.6 10.3 112 56-169 148-294 (355)
257 PF03141 Methyltransf_29: Puta 96.4 0.0038 8.2E-08 55.8 4.1 96 63-164 363-468 (506)
258 KOG2187 tRNA uracil-5-methyltr 96.4 0.0021 4.6E-08 57.4 2.5 56 63-121 381-443 (534)
259 COG0742 N6-adenine-specific me 96.4 0.023 5E-07 44.6 7.9 96 65-162 43-153 (187)
260 PF05958 tRNA_U5-meth_tr: tRNA 96.4 0.0012 2.6E-08 57.5 0.9 73 41-118 174-253 (352)
261 PF01861 DUF43: Protein of unk 96.3 0.044 9.5E-07 44.7 9.5 134 56-222 37-182 (243)
262 COG0116 Predicted N6-adenine-s 96.3 0.033 7.1E-07 48.5 8.9 110 53-163 180-344 (381)
263 PF07091 FmrO: Ribosomal RNA m 96.3 0.0021 4.5E-08 52.6 1.6 98 64-164 104-209 (251)
264 KOG2918 Carboxymethyl transfer 96.2 0.032 6.9E-07 47.0 8.5 149 63-220 85-279 (335)
265 PF03492 Methyltransf_7: SAM d 96.2 0.13 2.8E-06 44.6 12.3 148 63-211 14-245 (334)
266 PF01795 Methyltransf_5: MraW 96.1 0.0089 1.9E-07 50.8 4.7 66 52-119 8-79 (310)
267 KOG3924 Putative protein methy 96.0 0.015 3.2E-07 50.5 5.4 110 54-168 182-313 (419)
268 KOG1099 SAM-dependent methyltr 95.9 0.013 2.9E-07 47.2 4.4 100 58-161 34-161 (294)
269 COG1064 AdhP Zn-dependent alco 95.8 0.064 1.4E-06 46.2 8.7 92 63-165 164-261 (339)
270 KOG2352 Predicted spermine/spe 95.8 0.051 1.1E-06 48.5 8.1 96 68-165 51-163 (482)
271 KOG2730 Methylase [General fun 95.7 0.0064 1.4E-07 48.7 2.1 54 65-121 94-155 (263)
272 PF06859 Bin3: Bicoid-interact 95.6 0.0046 1E-07 44.0 0.7 86 126-220 3-94 (110)
273 PF07757 AdoMet_MTase: Predict 95.5 0.012 2.6E-07 41.7 2.7 32 64-98 57-88 (112)
274 KOG1596 Fibrillarin and relate 95.5 0.079 1.7E-06 43.2 7.5 95 63-162 154-260 (317)
275 COG0275 Predicted S-adenosylme 95.4 0.038 8.2E-07 46.5 5.6 67 52-119 11-83 (314)
276 KOG0822 Protein kinase inhibit 95.3 0.087 1.9E-06 47.6 7.9 126 27-161 334-476 (649)
277 PF04072 LCM: Leucine carboxyl 95.1 0.034 7.3E-07 43.7 4.3 84 65-149 78-182 (183)
278 PF06962 rRNA_methylase: Putat 94.9 0.033 7.2E-07 41.7 3.6 105 93-219 2-126 (140)
279 PF11599 AviRa: RRNA methyltra 94.5 0.083 1.8E-06 42.3 5.1 100 64-163 50-214 (246)
280 KOG2793 Putative N2,N2-dimethy 94.4 0.27 5.9E-06 40.5 8.0 98 63-164 83-200 (248)
281 PRK01747 mnmC bifunctional tRN 94.0 0.11 2.4E-06 49.2 5.7 95 66-161 58-204 (662)
282 PF11899 DUF3419: Protein of u 93.4 0.15 3.3E-06 44.8 5.1 59 109-167 275-338 (380)
283 cd08283 FDH_like_1 Glutathione 93.3 0.56 1.2E-05 41.2 8.7 99 63-164 182-307 (386)
284 COG3510 CmcI Cephalosporin hyd 93.2 1.6 3.4E-05 34.6 9.8 102 66-170 70-187 (237)
285 KOG4058 Uncharacterized conser 93.1 0.22 4.8E-06 37.5 4.8 105 53-168 61-177 (199)
286 KOG1501 Arginine N-methyltrans 92.8 0.11 2.4E-06 45.9 3.3 88 65-154 66-165 (636)
287 PF01189 Nol1_Nop2_Fmu: NOL1/N 92.7 0.16 3.4E-06 42.9 4.1 106 63-169 83-225 (283)
288 PF02153 PDH: Prephenate dehyd 92.6 0.15 3.2E-06 42.5 3.7 76 79-161 1-77 (258)
289 PRK09424 pntA NAD(P) transhydr 92.5 0.9 2E-05 41.6 8.9 95 64-164 163-286 (509)
290 cd00315 Cyt_C5_DNA_methylase C 92.4 0.45 9.7E-06 40.0 6.5 125 68-216 2-141 (275)
291 KOG0024 Sorbitol dehydrogenase 92.2 1.4 3E-05 37.7 9.0 97 63-168 167-278 (354)
292 PF05971 Methyltransf_10: Prot 92.1 0.34 7.3E-06 41.1 5.3 73 66-140 103-193 (299)
293 COG1063 Tdh Threonine dehydrog 91.8 1 2.2E-05 39.2 8.2 94 66-168 169-274 (350)
294 PRK07502 cyclohexadienyl dehyd 91.6 0.91 2E-05 38.6 7.6 90 66-161 6-98 (307)
295 PF03514 GRAS: GRAS domain fam 91.6 0.76 1.6E-05 40.4 7.2 109 54-166 100-246 (374)
296 COG0287 TyrA Prephenate dehydr 91.4 0.97 2.1E-05 38.1 7.3 88 67-160 4-95 (279)
297 PF05430 Methyltransf_30: S-ad 90.7 0.42 9.1E-06 35.1 4.0 54 144-231 71-124 (124)
298 PF05711 TylF: Macrocin-O-meth 90.4 0.39 8.5E-06 39.7 4.0 96 66-164 75-213 (248)
299 cd08237 ribitol-5-phosphate_DH 90.0 1.8 3.9E-05 37.3 8.1 94 63-164 161-257 (341)
300 PF02254 TrkA_N: TrkA-N domain 88.7 0.34 7.3E-06 34.6 2.2 81 74-161 4-94 (116)
301 PRK10742 putative methyltransf 87.9 0.91 2E-05 37.4 4.4 77 54-134 76-174 (250)
302 COG1255 Uncharacterized protei 87.8 7.7 0.00017 28.0 8.4 83 66-163 14-102 (129)
303 PF05206 TRM13: Methyltransfer 87.5 1.4 3E-05 36.7 5.4 35 63-98 16-55 (259)
304 PF10354 DUF2431: Domain of un 87.4 6.3 0.00014 30.4 8.7 122 71-220 2-154 (166)
305 PF07279 DUF1442: Protein of u 87.3 14 0.0003 29.8 10.7 107 53-167 29-152 (218)
306 PRK07417 arogenate dehydrogena 87.2 2.8 6.2E-05 35.1 7.3 83 68-159 2-87 (279)
307 KOG2539 Mitochondrial/chloropl 86.3 2.4 5.2E-05 38.0 6.4 101 66-167 201-319 (491)
308 KOG2651 rRNA adenine N-6-methy 85.4 0.84 1.8E-05 39.8 3.1 41 56-98 144-184 (476)
309 KOG1227 Putative methyltransfe 85.2 0.22 4.8E-06 41.9 -0.4 98 65-169 194-303 (351)
310 COG0686 Ald Alanine dehydrogen 85.2 2.7 5.9E-05 35.8 5.9 93 66-162 168-267 (371)
311 TIGR00675 dcm DNA-methyltransf 84.8 1.4 3E-05 37.8 4.2 121 69-216 1-138 (315)
312 PRK03659 glutathione-regulated 84.7 4.6 0.0001 37.9 8.0 86 67-162 401-497 (601)
313 PF02636 Methyltransf_28: Puta 84.7 1.1 2.4E-05 37.0 3.5 36 66-102 19-63 (252)
314 PRK08507 prephenate dehydrogen 84.6 3.5 7.7E-05 34.4 6.6 84 68-160 2-88 (275)
315 PF03269 DUF268: Caenorhabditi 84.6 3.2 7E-05 31.9 5.5 43 126-168 65-116 (177)
316 PF03686 UPF0146: Uncharacteri 83.4 3.1 6.7E-05 30.5 4.9 84 66-164 14-103 (127)
317 PRK03562 glutathione-regulated 83.4 8.1 0.00018 36.5 9.0 88 66-161 400-496 (621)
318 PRK05225 ketol-acid reductoiso 83.0 1.3 2.9E-05 39.7 3.4 91 66-165 36-133 (487)
319 KOG2352 Predicted spermine/spe 82.8 1.1 2.4E-05 40.3 2.8 130 33-167 266-420 (482)
320 TIGR01202 bchC 2-desacetyl-2-h 82.6 9.2 0.0002 32.4 8.4 86 65-164 144-232 (308)
321 PTZ00357 methyltransferase; Pr 82.2 4.4 9.5E-05 38.4 6.4 130 27-158 641-830 (1072)
322 KOG2198 tRNA cytosine-5-methyl 81.8 8.3 0.00018 33.6 7.6 27 143-169 276-302 (375)
323 COG1565 Uncharacterized conser 81.7 3.9 8.5E-05 35.6 5.6 64 34-103 51-123 (370)
324 PRK06545 prephenate dehydrogen 80.9 7.2 0.00016 34.1 7.2 85 68-158 2-90 (359)
325 PF14740 DUF4471: Domain of un 80.5 2.3 5E-05 35.9 3.8 79 109-215 200-286 (289)
326 PRK13699 putative methylase; P 80.5 2.6 5.6E-05 34.3 4.1 20 142-161 51-70 (227)
327 PF01555 N6_N4_Mtase: DNA meth 79.7 1.2 2.7E-05 35.5 1.9 50 52-106 180-230 (231)
328 COG5379 BtaA S-adenosylmethion 78.9 2.6 5.7E-05 35.6 3.6 65 99-163 296-366 (414)
329 cd01842 SGNH_hydrolase_like_5 78.5 6.1 0.00013 30.9 5.3 41 126-166 52-102 (183)
330 COG2933 Predicted SAM-dependen 78.0 7.1 0.00015 32.6 5.7 84 64-156 210-296 (358)
331 PRK09880 L-idonate 5-dehydroge 77.8 17 0.00037 31.2 8.6 92 64-164 168-267 (343)
332 PRK11524 putative methyltransf 77.6 2.8 6.1E-05 35.3 3.5 51 53-108 198-249 (284)
333 PLN02494 adenosylhomocysteinas 77.5 5.7 0.00012 36.0 5.5 103 50-164 238-342 (477)
334 COG1748 LYS9 Saccharopine dehy 76.7 14 0.00031 32.7 7.7 64 67-131 2-75 (389)
335 PF00107 ADH_zinc_N: Zinc-bind 76.4 4.4 9.6E-05 29.2 3.9 82 75-166 1-92 (130)
336 KOG2920 Predicted methyltransf 76.3 2.1 4.6E-05 35.8 2.4 37 65-103 116-153 (282)
337 KOG1098 Putative SAM-dependent 76.1 3.5 7.5E-05 38.4 3.8 107 56-168 35-162 (780)
338 cd08254 hydroxyacyl_CoA_DH 6-h 76.1 33 0.00071 28.9 9.8 91 63-164 163-264 (338)
339 PF07109 Mg-por_mtran_C: Magne 75.9 17 0.00037 25.4 6.4 77 132-222 3-86 (97)
340 PRK12491 pyrroline-5-carboxyla 75.7 13 0.00029 31.0 7.1 88 67-161 3-95 (272)
341 cd05213 NAD_bind_Glutamyl_tRNA 75.3 18 0.0004 30.8 8.0 122 65-208 177-302 (311)
342 PF10237 N6-adenineMlase: Prob 74.5 37 0.0008 26.1 9.9 93 65-164 25-124 (162)
343 PRK09489 rsmC 16S ribosomal RN 74.3 18 0.00039 31.4 7.8 101 56-164 11-113 (342)
344 TIGR00561 pntA NAD(P) transhyd 74.3 9.3 0.0002 35.1 6.1 93 65-162 163-283 (511)
345 PRK10669 putative cation:proto 73.5 10 0.00023 35.2 6.5 87 67-162 418-514 (558)
346 COG0270 Dcm Site-specific DNA 73.5 13 0.00028 32.0 6.7 120 66-212 3-141 (328)
347 PHA01634 hypothetical protein 73.3 4.1 9E-05 30.1 2.9 40 66-107 29-69 (156)
348 cd05188 MDR Medium chain reduc 73.2 32 0.0007 27.7 8.8 91 63-165 132-234 (271)
349 PRK05562 precorrin-2 dehydroge 71.1 28 0.00062 28.3 7.7 65 65-131 24-92 (223)
350 PF03721 UDPG_MGDP_dh_N: UDP-g 71.0 9.1 0.0002 30.1 4.7 97 68-169 2-125 (185)
351 PF03807 F420_oxidored: NADP o 70.2 1.7 3.7E-05 29.7 0.4 80 75-161 6-92 (96)
352 PRK08818 prephenate dehydrogen 70.2 15 0.00032 32.4 6.2 75 67-160 5-85 (370)
353 COG0373 HemA Glutamyl-tRNA red 69.0 27 0.00058 31.2 7.6 96 65-170 177-279 (414)
354 TIGR03451 mycoS_dep_FDH mycoth 67.6 68 0.0015 27.6 10.0 93 63-164 174-277 (358)
355 cd00401 AdoHcyase S-adenosyl-L 67.6 26 0.00057 31.3 7.4 98 54-164 190-290 (413)
356 PF06016 Reovirus_L2: Reovirus 67.0 20 0.00043 36.4 6.9 97 56-157 814-919 (1289)
357 PRK15001 SAM-dependent 23S rib 67.0 19 0.00041 31.8 6.3 88 68-165 47-144 (378)
358 PRK13699 putative methylase; P 66.5 9.1 0.0002 31.1 4.0 50 53-107 153-203 (227)
359 cd08281 liver_ADH_like1 Zinc-d 66.3 74 0.0016 27.6 10.0 92 63-164 189-291 (371)
360 PRK11730 fadB multifunctional 65.8 26 0.00057 33.7 7.5 149 65-221 312-496 (715)
361 cd08230 glucose_DH Glucose deh 65.7 33 0.00072 29.5 7.7 92 64-166 171-272 (355)
362 PF01210 NAD_Gly3P_dh_N: NAD-d 64.9 4.4 9.6E-05 30.8 1.8 89 68-163 1-103 (157)
363 PRK08293 3-hydroxybutyryl-CoA 64.9 34 0.00073 28.7 7.3 88 67-161 4-118 (287)
364 PRK07680 late competence prote 64.5 27 0.00058 29.0 6.6 88 68-162 2-95 (273)
365 PF08484 Methyltransf_14: C-me 64.5 34 0.00074 26.2 6.6 88 65-161 67-157 (160)
366 PRK07679 pyrroline-5-carboxyla 64.5 31 0.00068 28.8 7.0 89 67-162 4-98 (279)
367 TIGR02437 FadB fatty oxidation 64.5 25 0.00054 33.9 7.0 151 65-221 312-496 (714)
368 TIGR02822 adh_fam_2 zinc-bindi 63.8 71 0.0015 27.2 9.2 90 63-164 163-255 (329)
369 COG0604 Qor NADPH:quinone redu 63.3 19 0.00041 31.0 5.6 100 56-166 134-244 (326)
370 COG0541 Ffh Signal recognition 63.2 20 0.00044 32.1 5.7 104 65-169 99-227 (451)
371 TIGR00006 S-adenosyl-methyltra 62.9 10 0.00022 32.5 3.7 24 141-164 218-241 (305)
372 PF04445 SAM_MT: Putative SAM- 62.2 9.4 0.0002 31.3 3.3 79 54-136 63-163 (234)
373 PF08002 DUF1697: Protein of u 62.1 15 0.00032 27.4 4.1 36 194-229 16-51 (137)
374 KOG1122 tRNA and rRNA cytosine 62.0 59 0.0013 29.1 8.2 105 63-169 239-377 (460)
375 PF03574 Peptidase_S48: Peptid 61.9 8.1 0.00018 28.0 2.5 30 133-162 13-42 (149)
376 KOG1269 SAM-dependent methyltr 61.5 23 0.00051 31.0 5.8 102 65-169 180-319 (364)
377 cd08232 idonate-5-DH L-idonate 60.8 77 0.0017 26.8 9.0 89 65-163 165-262 (339)
378 PRK09496 trkA potassium transp 60.4 44 0.00094 29.9 7.6 86 68-161 2-97 (453)
379 PRK09273 hypothetical protein; 60.0 8.5 0.00018 30.9 2.6 48 67-115 64-111 (211)
380 PF03446 NAD_binding_2: NAD bi 59.8 9.3 0.0002 29.1 2.8 112 69-218 4-120 (163)
381 PRK11064 wecC UDP-N-acetyl-D-m 59.8 1.3E+02 0.0028 26.9 10.5 94 67-164 4-120 (415)
382 PF12692 Methyltransf_17: S-ad 59.5 17 0.00037 27.6 3.9 96 67-165 30-136 (160)
383 PRK11199 tyrA bifunctional cho 59.0 32 0.00069 30.3 6.3 73 65-160 97-172 (374)
384 COG0275 Predicted S-adenosylme 58.8 13 0.00029 31.6 3.7 25 141-165 222-246 (314)
385 TIGR01120 rpiB ribose 5-phosph 57.7 11 0.00024 28.3 2.8 45 70-115 60-104 (143)
386 PRK00050 16S rRNA m(4)C1402 me 57.3 14 0.00031 31.4 3.7 25 141-165 214-238 (296)
387 PRK08306 dipicolinate synthase 56.9 36 0.00078 28.9 6.1 87 65-162 151-240 (296)
388 TIGR00936 ahcY adenosylhomocys 56.8 75 0.0016 28.4 8.2 99 53-164 182-283 (406)
389 PRK14806 bifunctional cyclohex 56.4 47 0.001 32.0 7.5 87 67-159 4-93 (735)
390 PLN02688 pyrroline-5-carboxyla 56.3 48 0.001 27.2 6.7 85 68-160 2-92 (266)
391 PRK05708 2-dehydropantoate 2-r 56.2 1.3E+02 0.0027 25.6 10.4 93 67-167 3-108 (305)
392 PRK11154 fadJ multifunctional 55.8 58 0.0012 31.4 7.9 150 65-221 308-493 (708)
393 PF13460 NAD_binding_10: NADH( 55.4 89 0.0019 23.6 12.9 84 72-163 3-97 (183)
394 PRK09496 trkA potassium transp 55.2 24 0.00053 31.5 5.1 83 66-156 231-324 (453)
395 KOG1209 1-Acyl dihydroxyaceton 55.1 1.2E+02 0.0025 24.9 10.2 77 64-161 5-84 (289)
396 PRK06719 precorrin-2 dehydroge 55.0 91 0.002 23.6 7.9 78 65-151 12-92 (157)
397 cd05278 FDH_like Formaldehyde 54.6 68 0.0015 27.2 7.6 92 63-163 165-267 (347)
398 PTZ00117 malate dehydrogenase; 54.4 92 0.002 26.7 8.3 95 66-163 5-122 (319)
399 PRK15182 Vi polysaccharide bio 54.4 68 0.0015 28.8 7.7 96 67-167 7-124 (425)
400 TIGR00689 rpiB_lacA_lacB sugar 54.3 14 0.00029 27.9 2.7 45 70-115 59-103 (144)
401 PRK10309 galactitol-1-phosphat 54.2 1.4E+02 0.003 25.5 9.5 94 63-165 158-262 (347)
402 PLN02353 probable UDP-glucose 53.9 1.3E+02 0.0028 27.5 9.4 99 68-169 3-132 (473)
403 cd08255 2-desacetyl-2-hydroxye 53.9 1.1E+02 0.0024 24.9 8.6 90 63-163 95-190 (277)
404 PRK11524 putative methyltransf 53.8 15 0.00033 30.9 3.3 20 143-162 60-79 (284)
405 TIGR02825 B4_12hDH leukotriene 53.8 62 0.0013 27.3 7.2 91 63-164 136-238 (325)
406 KOG1197 Predicted quinone oxid 53.6 25 0.00053 29.4 4.3 97 56-164 138-246 (336)
407 PF05050 Methyltransf_21: Meth 53.5 20 0.00043 26.7 3.7 32 71-103 1-37 (167)
408 PRK08618 ornithine cyclodeamin 53.4 51 0.0011 28.3 6.6 96 64-169 125-227 (325)
409 PRK10458 DNA cytosine methylas 53.3 78 0.0017 28.9 7.9 38 66-105 88-126 (467)
410 TIGR03366 HpnZ_proposed putati 53.3 39 0.00085 28.0 5.8 93 64-165 119-220 (280)
411 TIGR02964 xanthine_xdhC xanthi 52.9 60 0.0013 26.8 6.6 40 199-238 200-241 (246)
412 PF01358 PARP_regulatory: Poly 52.3 57 0.0012 27.6 6.3 79 65-167 58-139 (294)
413 PRK05571 ribose-5-phosphate is 52.1 16 0.00034 27.7 2.8 43 72-115 64-106 (148)
414 PRK05479 ketol-acid reductoiso 51.9 36 0.00077 29.5 5.3 87 66-163 17-108 (330)
415 TIGR01470 cysG_Nterm siroheme 51.9 50 0.0011 26.3 5.9 62 66-131 9-76 (205)
416 PRK06928 pyrroline-5-carboxyla 51.8 67 0.0015 26.8 6.9 88 68-162 3-97 (277)
417 PF02502 LacAB_rpiB: Ribose/Ga 51.6 12 0.00026 28.1 2.1 44 70-114 60-103 (140)
418 PF01555 N6_N4_Mtase: DNA meth 51.5 11 0.00024 29.8 2.1 21 142-162 35-55 (231)
419 PF01795 Methyltransf_5: MraW 51.4 11 0.00025 32.2 2.2 25 140-164 218-242 (310)
420 PLN02827 Alcohol dehydrogenase 51.2 83 0.0018 27.5 7.7 93 63-164 191-296 (378)
421 TIGR03026 NDP-sugDHase nucleot 50.6 1.8E+02 0.0039 25.8 10.0 92 68-163 2-120 (411)
422 TIGR03201 dearomat_had 6-hydro 50.5 1.6E+02 0.0034 25.2 9.2 93 63-165 164-274 (349)
423 PRK07530 3-hydroxybutyryl-CoA 50.0 1.3E+02 0.0029 25.1 8.5 85 66-160 4-116 (292)
424 KOG1253 tRNA methyltransferase 50.0 4.2 9.1E-05 36.8 -0.7 94 65-164 109-217 (525)
425 KOG2666 UDP-glucose/GDP-mannos 49.5 20 0.00043 30.9 3.2 39 67-106 2-43 (481)
426 PF10017 Methyltransf_33: Hist 49.5 31 0.00066 25.2 4.0 28 194-221 93-120 (127)
427 COG0698 RpiB Ribose 5-phosphat 49.4 19 0.00041 27.3 2.8 47 68-115 60-106 (151)
428 KOG2782 Putative SAM dependent 49.2 15 0.00033 29.8 2.4 53 47-101 26-79 (303)
429 PRK12921 2-dehydropantoate 2-r 48.6 1.5E+02 0.0032 24.8 8.6 88 68-164 2-103 (305)
430 TIGR02441 fa_ox_alpha_mit fatt 48.4 67 0.0015 31.1 7.1 96 65-166 334-453 (737)
431 PRK06718 precorrin-2 dehydroge 48.2 1.4E+02 0.003 23.7 8.0 62 66-131 10-77 (202)
432 cd08234 threonine_DH_like L-th 48.0 1.7E+02 0.0036 24.6 9.8 93 63-164 157-258 (334)
433 PF03435 Saccharop_dh: Sacchar 48.0 60 0.0013 28.4 6.3 62 69-131 1-74 (386)
434 PRK10637 cysG siroheme synthas 47.4 78 0.0017 28.7 7.0 86 66-161 12-101 (457)
435 PF12242 Eno-Rase_NADH_b: NAD( 47.4 34 0.00074 22.8 3.4 34 63-97 36-71 (78)
436 PF07101 DUF1363: Protein of u 46.8 8.6 0.00019 26.6 0.6 17 70-86 7-23 (124)
437 PRK11880 pyrroline-5-carboxyla 46.6 85 0.0019 25.8 6.7 79 68-153 4-86 (267)
438 PRK12615 galactose-6-phosphate 46.5 22 0.00047 27.6 2.9 45 70-115 61-105 (171)
439 PRK10537 voltage-gated potassi 46.4 73 0.0016 28.3 6.5 87 66-162 240-335 (393)
440 PF02826 2-Hacid_dh_C: D-isome 46.2 7.6 0.00016 30.1 0.3 88 66-161 36-125 (178)
441 PF01206 TusA: Sulfurtransfera 46.1 75 0.0016 20.1 5.6 59 140-228 11-69 (70)
442 PRK06522 2-dehydropantoate 2-r 46.1 1E+02 0.0022 25.7 7.3 89 68-165 2-102 (304)
443 PRK12490 6-phosphogluconate de 45.9 67 0.0015 27.1 6.1 83 69-161 3-92 (299)
444 cd08245 CAD Cinnamyl alcohol d 45.8 1.8E+02 0.0039 24.4 9.3 92 63-164 160-257 (330)
445 PRK09260 3-hydroxybutyryl-CoA 45.6 1.6E+02 0.0034 24.7 8.2 89 67-162 2-116 (288)
446 PRK08655 prephenate dehydrogen 45.1 82 0.0018 28.4 6.8 86 68-163 2-92 (437)
447 PF07991 IlvN: Acetohydroxy ac 44.9 13 0.00029 28.6 1.4 91 66-165 4-97 (165)
448 PRK13403 ketol-acid reductoiso 44.8 67 0.0015 27.8 5.8 89 66-164 16-107 (335)
449 PRK06249 2-dehydropantoate 2-r 44.8 1.3E+02 0.0029 25.4 7.8 92 65-165 4-108 (313)
450 PRK00045 hemA glutamyl-tRNA re 44.5 1.3E+02 0.0029 26.8 8.0 99 65-169 181-284 (423)
451 TIGR01692 HIBADH 3-hydroxyisob 44.2 86 0.0019 26.3 6.4 79 75-161 3-88 (288)
452 PLN02712 arogenate dehydrogena 44.1 82 0.0018 30.2 6.9 85 65-159 51-139 (667)
453 PLN02740 Alcohol dehydrogenase 44.0 2.2E+02 0.0047 24.8 10.7 93 63-164 196-301 (381)
454 TIGR01119 lacB galactose-6-pho 43.6 25 0.00054 27.3 2.8 44 71-115 62-105 (171)
455 PRK08622 galactose-6-phosphate 43.6 24 0.00052 27.4 2.7 43 72-115 63-105 (171)
456 PRK00066 ldh L-lactate dehydro 43.6 1.4E+02 0.0031 25.5 7.7 98 65-163 5-122 (315)
457 PRK06130 3-hydroxybutyryl-CoA 43.5 1E+02 0.0022 26.0 6.9 88 66-163 4-114 (311)
458 PF02005 TRM: N2,N2-dimethylgu 43.3 21 0.00044 31.6 2.6 94 65-164 49-155 (377)
459 PRK07574 formate dehydrogenase 43.2 70 0.0015 28.3 5.9 87 67-162 193-283 (385)
460 TIGR00872 gnd_rel 6-phosphoglu 42.5 71 0.0015 27.0 5.7 83 69-161 3-91 (298)
461 PTZ00215 ribose 5-phosphate is 42.5 27 0.00058 26.6 2.7 44 71-115 66-109 (151)
462 PLN03139 formate dehydrogenase 42.2 31 0.00067 30.6 3.5 88 66-162 199-290 (386)
463 PRK09599 6-phosphogluconate de 42.1 90 0.002 26.3 6.3 84 69-161 3-92 (301)
464 COG1062 AdhC Zn-dependent alco 42.0 62 0.0013 28.2 5.1 100 56-165 177-287 (366)
465 PLN02586 probable cinnamyl alc 42.0 1.6E+02 0.0036 25.4 8.1 91 64-164 182-279 (360)
466 TIGR02440 FadJ fatty oxidation 41.9 98 0.0021 29.8 7.1 151 65-221 303-488 (699)
467 PRK05476 S-adenosyl-L-homocyst 41.6 59 0.0013 29.2 5.2 87 65-164 211-300 (425)
468 PRK06223 malate dehydrogenase; 41.2 1.5E+02 0.0034 24.9 7.6 94 67-163 3-119 (307)
469 COG0059 IlvC Ketol-acid reduct 41.0 52 0.0011 28.2 4.4 90 66-164 18-110 (338)
470 COG1893 ApbA Ketopantoate redu 40.9 2.1E+02 0.0046 24.4 8.4 90 68-166 2-104 (307)
471 PLN03154 putative allyl alcoho 40.8 2.3E+02 0.0051 24.3 9.3 91 63-164 156-259 (348)
472 PLN00112 malate dehydrogenase 40.5 1.5E+02 0.0034 26.8 7.7 99 63-163 97-226 (444)
473 TIGR00518 alaDH alanine dehydr 40.5 43 0.00093 29.4 4.1 93 66-162 167-266 (370)
474 PF06557 DUF1122: Protein of u 39.8 60 0.0013 25.0 4.2 60 142-219 65-124 (170)
475 COG0286 HsdM Type I restrictio 39.4 26 0.00057 32.0 2.8 53 53-107 175-232 (489)
476 COG1088 RfbB dTDP-D-glucose 4, 39.3 66 0.0014 27.6 4.8 42 79-121 16-63 (340)
477 PRK07819 3-hydroxybutyryl-CoA 39.2 1.1E+02 0.0024 25.7 6.3 93 67-167 6-125 (286)
478 cd08239 THR_DH_like L-threonin 38.9 2.4E+02 0.0052 23.8 9.4 93 63-164 161-263 (339)
479 COG0451 WcaG Nucleoside-diphos 38.7 1.1E+02 0.0024 25.3 6.4 89 69-161 3-113 (314)
480 TIGR01118 lacA galactose-6-pho 38.4 25 0.00054 26.4 2.0 41 74-115 63-103 (141)
481 PF02737 3HCDH_N: 3-hydroxyacy 38.3 98 0.0021 24.0 5.5 91 69-165 2-116 (180)
482 PRK00094 gpsA NAD(P)H-dependen 38.2 1.7E+02 0.0037 24.6 7.5 87 68-163 3-105 (325)
483 PRK15438 erythronate-4-phospha 38.1 49 0.0011 29.3 4.1 88 65-161 115-205 (378)
484 PRK08410 2-hydroxyacid dehydro 38.0 47 0.001 28.4 3.9 85 66-161 145-230 (311)
485 PLN02819 lysine-ketoglutarate 37.8 1E+02 0.0022 31.3 6.5 67 66-132 569-656 (1042)
486 PRK05086 malate dehydrogenase; 37.7 2.1E+02 0.0047 24.4 7.9 96 68-164 2-119 (312)
487 KOG2811 Uncharacterized conser 37.3 64 0.0014 28.4 4.5 31 67-98 184-217 (420)
488 PLN02256 arogenate dehydrogena 37.1 1.3E+02 0.0027 25.7 6.4 85 65-159 35-123 (304)
489 PF14737 DUF4470: Domain of un 36.9 1.1E+02 0.0024 21.2 5.0 39 63-102 21-66 (100)
490 PRK08229 2-dehydropantoate 2-r 36.8 2.4E+02 0.0052 24.1 8.2 86 67-162 3-106 (341)
491 COG1052 LdhA Lactate dehydroge 36.8 39 0.00084 29.2 3.2 86 67-162 147-235 (324)
492 KOG0821 Predicted ribosomal RN 36.5 84 0.0018 25.7 4.8 64 53-119 39-108 (326)
493 KOG3851 Sulfide:quinone oxidor 36.5 56 0.0012 28.4 4.0 34 64-98 37-72 (446)
494 cd08301 alcohol_DH_plants Plan 36.3 2.8E+02 0.0061 23.8 9.7 94 63-165 185-291 (369)
495 COG0569 TrkA K+ transport syst 36.3 1.4E+02 0.003 24.1 6.3 61 68-131 2-73 (225)
496 cd08293 PTGR2 Prostaglandin re 36.1 1.4E+02 0.0029 25.3 6.6 86 67-163 156-254 (345)
497 PRK12613 galactose-6-phosphate 35.9 29 0.00062 26.1 2.0 41 74-115 62-102 (141)
498 TIGR03739 PRTRC_D PRTRC system 35.9 1.5E+02 0.0032 25.3 6.7 47 53-100 261-307 (320)
499 PRK00115 hemE uroporphyrinogen 35.9 2.7E+02 0.0059 24.0 8.4 88 66-168 239-327 (346)
500 PLN02178 cinnamyl-alcohol dehy 35.5 2.6E+02 0.0057 24.4 8.4 91 64-164 177-274 (375)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=7.6e-38 Score=257.83 Aligned_cols=201 Identities=31% Similarity=0.513 Sum_probs=178.5
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccch-HHHhccCCCCCCcceEEEEcCCccHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFM-TSVLDGYDGFKGVKRLVDVGGSAGDCL 80 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~l~~~~~~~~~~~~vLDvG~G~G~~~ 80 (244)
.+|.+|.+++++|+ ++++..+|.++|+++..+++..+.|+++|...+.... ..+...++ +++..+|||||||+|.++
T Consensus 38 ~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~ 115 (241)
T PF00891_consen 38 PAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFA 115 (241)
T ss_dssp HGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHH
T ss_pred HHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc-ccCccEEEeccCcchHHH
Confidence 57999999999999 9999999999999999999999999999999888777 77888898 999999999999999999
Q ss_pred HHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCC--CE
Q 041308 81 RIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAG--RK 158 (244)
Q Consensus 81 ~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg--G~ 158 (244)
..+++++|+++ ++++|+|.+++.+++.+||+++.||+++++|.+|+|+++++||+|+++++.++|++++++|+|| |+
T Consensus 116 ~~l~~~~P~l~-~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~ 194 (241)
T PF00891_consen 116 IALARAYPNLR-ATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGR 194 (241)
T ss_dssp HHHHHHSTTSE-EEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEE
T ss_pred HHHHHHCCCCc-ceeeccHhhhhccccccccccccccHHhhhccccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCe
Confidence 99999999999 9999999999998888999999999998899999999999999999999999999999999999 99
Q ss_pred EEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHH
Q 041308 159 LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGF 207 (244)
Q Consensus 159 lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~ 207 (244)
|+|+|.+.++....+........+|+.|+. ..+|++||.+||++|++
T Consensus 195 llI~e~~~~~~~~~~~~~~~~~~~dl~ml~--~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 195 LLIIEMVLPDDRTGPPSAEMDALFDLNMLV--LTGGKERTEEEWEALLK 241 (241)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHHHHHHHH--HHSSS-EEHHHHHHHHH
T ss_pred EEEEeeccCCCCCCchHHHHHHHHHHHHHH--hcCCCCcCHHHHHHHhC
Confidence 999999999886655443233578999998 66799999999999984
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=5.2e-33 Score=231.89 Aligned_cols=226 Identities=35% Similarity=0.600 Sum_probs=202.7
Q ss_pred CCChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHH
Q 041308 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCL 80 (244)
Q Consensus 1 ~~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~ 80 (244)
++.|.+|.++++.|. .++..++|..++++...++.....|++.|........+.+.+.+.+|++....+|||+|.|..+
T Consensus 114 ~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~ 192 (342)
T KOG3178|consen 114 MNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVL 192 (342)
T ss_pred hhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHH
Confidence 468999999999999 8999999988999999999999999999999999988889999988899999999999999999
Q ss_pred HHHHHHcCCCCeEEEeechHHHHhCCCC-CCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEE
Q 041308 81 RIILQKHCFICEGINFDLPEVVAKAPSI-PEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKL 159 (244)
Q Consensus 81 ~~l~~~~p~~~~~~~~D~~~~i~~a~~~-~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~l 159 (244)
..++..+|+++ ++.+|+|.+++.+... +.|+.+.||+|++.|.+|+|++.++||||+|+++.++|+||++.|+|||++
T Consensus 193 k~ll~~fp~ik-~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkI 271 (342)
T KOG3178|consen 193 KNLLSKYPHIK-GINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKI 271 (342)
T ss_pred HHHHHhCCCCc-eeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEE
Confidence 99999999999 9999999999999987 889999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCC-CCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeec
Q 041308 160 IACEPVLPDD-SNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSK 229 (244)
Q Consensus 160 ii~d~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~ 229 (244)
+++|.+.++. ...........-+|+.|+. ...+|.+|+.+|++.++.++||.+..+......+.++-..
T Consensus 272 iv~E~V~p~e~~~dd~~s~v~~~~d~lm~~-~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~ 341 (342)
T KOG3178|consen 272 IVVENVTPEEDKFDDIDSSVTRDMDLLMLT-QTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFH 341 (342)
T ss_pred EEEeccCCCCCCccccccceeehhHHHHHH-HhccceeccHHHHHhcchhhcCceeEEEeccCccchheeC
Confidence 9999988852 2222223445678888888 6677999999999999999999999998877766655443
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.95 E-value=7.7e-27 Score=198.74 Aligned_cols=201 Identities=17% Similarity=0.196 Sum_probs=144.6
Q ss_pred ChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHH
Q 041308 3 AWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRI 82 (244)
Q Consensus 3 ~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~ 82 (244)
.|.+|.+++|+ + +++....+.+ ...+.....+...+........+.+++.++ +++..+|||||||+|.+++.
T Consensus 95 ~~~~l~~~~r~-~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~ 166 (306)
T TIGR02716 95 FYMGLSQAVRG-Q-KNFKGQVPYP-----PVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAA 166 (306)
T ss_pred HHHhHHHHhcC-C-cccccccCCC-----CCCHHHHHhHHHHHHhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHHHHH
Confidence 48999999984 4 3443322211 112222223333333444445566778887 88889999999999999999
Q ss_pred HHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCcceEEEeccccccCCHHHHHHHHHHHHHHcC
Q 041308 83 ILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDECKLIMENYYKALL 154 (244)
Q Consensus 83 l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~ 154 (244)
+++++|+++ ++++|.|.+++.++++ +|++++.+|+++. +|.+|+|++.+++|+++++.+.++|++++++|+
T Consensus 167 ~~~~~p~~~-~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~ 245 (306)
T TIGR02716 167 MLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMR 245 (306)
T ss_pred HHHHCCCCE-EEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcC
Confidence 999999999 9999999899887642 6899999999874 777899999999999999988999999999999
Q ss_pred CCCEEEEecccCCCCCCchHHhhhhhc-ccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEE
Q 041308 155 AGRKLIACEPVLPDDSNESQRTRALLE-GDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 155 pgG~lii~d~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
|||+++|.|.+.++... +........ ....+.. .-...++.++|.++|+++||+.+++
T Consensus 246 pgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 246 SGGRLLILDMVIDDPEN-PNFDYLSHYILGAGMPF---SVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred CCCEEEEEEeccCCCCC-chhhHHHHHHHHccccc---ccccCCCHHHHHHHHHHcCCCeeEe
Confidence 99999999988765432 222111111 1111110 1112345799999999999998765
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.88 E-value=1.6e-21 Score=157.94 Aligned_cols=172 Identities=17% Similarity=0.177 Sum_probs=129.1
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p 123 (244)
+.+.++.... ..++.+|||||||||..+..+++..+..+ ++++|. +.|++.++++ ..|+|+.+|+.+. +|
T Consensus 39 Wr~~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~-v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~ 116 (238)
T COG2226 39 WRRALISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGE-VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFP 116 (238)
T ss_pred HHHHHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCce-EEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCC
Confidence 3455666665 45789999999999999999999999888 999999 9999999874 2389999999874 77
Q ss_pred cc--eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHh-hhh--hh--------
Q 041308 124 VV--DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIF-VMT--IY-------- 190 (244)
Q Consensus 124 ~~--D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~-~~~--~~-------- 190 (244)
+. |+|++++.|+++++. .++|++++|+|||||++++.|...+..+. .......+... .+- +.
T Consensus 117 D~sFD~vt~~fglrnv~d~--~~aL~E~~RVlKpgG~~~vle~~~p~~~~---~~~~~~~~~~~~v~P~~g~~~~~~~~~ 191 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDI--DKALKEMYRVLKPGGRLLVLEFSKPDNPV---LRKAYILYYFKYVLPLIGKLVAKDAEA 191 (238)
T ss_pred CCccCEEEeeehhhcCCCH--HHHHHHHHHhhcCCeEEEEEEcCCCCchh---hHHHHHHHHHHhHhhhhceeeecChHH
Confidence 74 999999999999986 48999999999999999999998776632 11111111111 110 00
Q ss_pred -----ccCceecCHHHHHHHHHhCCCCeEEEEEccce-eEEEeecC
Q 041308 191 -----RAKGKHKTEQEFKQLGFSTGFPHLRAFISIIF-TLFLSSKS 230 (244)
Q Consensus 191 -----~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~~~~~~~ 230 (244)
...-...+.+++.++++++||+.+..+....+ ..+..+.|
T Consensus 192 y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 192 YEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 00112347889999999999999997776554 44555544
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.86 E-value=4.1e-22 Score=162.58 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=85.8
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-C
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-I 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~ 122 (244)
+.+.+++... ..++.+|||+|||||..+..++++. |+.+ ++++|. +.|++.++++ .+|+++.+|+.+. +
T Consensus 35 wr~~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~-v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 35 WRRKLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGK-VVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp --SHHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred HHHHHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccE-EEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 3344555554 5677899999999999999999875 5678 999999 9999999853 5899999999774 6
Q ss_pred Cc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh-hccc-HhhhhhhccC-----
Q 041308 123 HV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL-LEGD-IFVMTIYRAK----- 193 (244)
Q Consensus 123 p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~-~~~d-~~~~~~~~~~----- 193 (244)
++ .|+|++.+.+|++++. .+.+++++|+|||||+++|+|...+.. +...... .++. +....+....
T Consensus 113 ~d~sfD~v~~~fglrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~---~~~~~~~~~y~~~ilP~~g~l~~~~~~~ 187 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRN---PLLRALYKFYFKYILPLIGRLLSGDREA 187 (233)
T ss_dssp -TT-EEEEEEES-GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SS---HHHHHHHHH-------------------
T ss_pred CCCceeEEEHHhhHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCC---chhhceeeeeeccccccccccccccccc
Confidence 65 4999999999999986 478999999999999999999987765 2221111 1111 0000000000
Q ss_pred --------ceecCHHHHHHHHHhCCCCeEEEEEcccee
Q 041308 194 --------GKHKTEQEFKQLGFSTGFPHLRAFISIIFT 223 (244)
Q Consensus 194 --------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 223 (244)
....+.+++.++++++||+.++.+....+.
T Consensus 188 Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~ 225 (233)
T PF01209_consen 188 YRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGI 225 (233)
T ss_dssp --------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc
Confidence 122377899999999999999987776543
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.86 E-value=2.9e-20 Score=154.65 Aligned_cols=160 Identities=20% Similarity=0.159 Sum_probs=117.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC---------CCeeEEeCCCCCC-CCc--ceEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI---------PEVTHIGGDMFKS-IHV--VDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~---------~~i~~~~gd~~~~-~p~--~D~v 128 (244)
..+..+|||+|||||.++..++++. |..+ ++++|+ ++|++.|+++ ++++++.+|+.+. ++. .|+|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~-V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGK-VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 5667899999999999999998875 5678 999999 9999988642 4789999998763 655 4999
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcc-cHh--hhh-hh----------ccCc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEG-DIF--VMT-IY----------RAKG 194 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~-d~~--~~~-~~----------~~~~ 194 (244)
++.+++|++++. .+++++++|+|||||++++.|...++....+ ....++ ... ... .. ..-.
T Consensus 150 ~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~ 224 (261)
T PLN02233 150 TMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTT---SMQEWMIDNVVVPVATGYGLAKEYEYLKSSIN 224 (261)
T ss_pred EEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHH---HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHH
Confidence 999999999875 5889999999999999999998765432111 110110 000 000 00 0012
Q ss_pred eecCHHHHHHHHHhCCCCeEEEEEcccee-EEEee
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAFISIIFT-LFLSS 228 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-~~~~~ 228 (244)
..++.+++.++++++||+.++.....++. .+.++
T Consensus 225 ~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 225 EYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred hcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 35689999999999999999988876543 34443
No 7
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.84 E-value=6.6e-21 Score=156.79 Aligned_cols=150 Identities=14% Similarity=0.124 Sum_probs=112.9
Q ss_pred CCcceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCcceEEEecc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHVVDAIFMKW 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~~D~v~~~~ 132 (244)
.+..+|||+|||+|.++..+++.. |+.+ ++++|+ +.|++.|+++ .+++++.+|+.+. ++..|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~-v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeec
Confidence 466799999999999999999874 7888 999999 9999988753 4789999999765 56679999999
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhh-h------------hccCceecCH
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMT-I------------YRAKGKHKTE 199 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~-~------------~~~~~~~~t~ 199 (244)
++||+++++...++++++++|+|||.+++.|.+.+++...... ........... . ....-...|.
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL--LIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 9999998888899999999999999999999876654221110 00000000000 0 0011235689
Q ss_pred HHHHHHHHhCCCCeEEE
Q 041308 200 QEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~~ 216 (244)
+++.+++++|||+.+++
T Consensus 209 ~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 209 ETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHcCCchHHH
Confidence 99999999999996654
No 8
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.83 E-value=5.4e-20 Score=152.01 Aligned_cols=178 Identities=16% Similarity=0.225 Sum_probs=123.7
Q ss_pred CchHHHHHHHHHHcccccc------hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHH--cCCCCeEEEeec-hHHHHh
Q 041308 34 KPKMNGLMRKAMSRVFVPF------MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK--HCFICEGINFDL-PEVVAK 104 (244)
Q Consensus 34 ~~~~~~~f~~~~~~~~~~~------~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~~D~-~~~i~~ 104 (244)
+...++.|++......... +..+++.+ .++..+|||||||+|..+..+++. .|+.+ ++++|. +.|++.
T Consensus 21 ~~~~a~~yd~~~~~~~p~y~~~~~~~~~~~~~~--~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~-v~gvD~S~~ml~~ 97 (247)
T PRK15451 21 DERVAEVFPDMIQRSVPGYSNIISMIGMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIER 97 (247)
T ss_pred ChHHHHhhhhHHHhcCCChHHHHHHHHHHHHHh--CCCCCEEEEEcccCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHH
Confidence 3455567776654333211 11222222 346689999999999999999884 58889 999999 999999
Q ss_pred CCCC-------CCeeEEeCCCCCC-CCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCC-chHH
Q 041308 105 APSI-------PEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSN-ESQR 175 (244)
Q Consensus 105 a~~~-------~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~-~~~~ 175 (244)
++++ .+++++.+|+.+. ++..|+|++..++||+++++...++++++++|||||.+++.|.+..+... .+..
T Consensus 98 A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~ 177 (247)
T PRK15451 98 CRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELL 177 (247)
T ss_pred HHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHH
Confidence 8763 4799999998764 45579999999999999888889999999999999999999977654422 1111
Q ss_pred hhhhhcccHhhhhhh-----------ccC-ceecCHHHHHHHHHhCCCCeEEE
Q 041308 176 TRALLEGDIFVMTIY-----------RAK-GKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 176 ~~~~~~~d~~~~~~~-----------~~~-~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
.. .+.+.....++ ..+ -...+.++..++|++|||+.+.+
T Consensus 178 ~~--~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 178 FN--MHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSEL 228 (247)
T ss_pred HH--HHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHH
Confidence 11 01111000000 001 12348899999999999997654
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.83 E-value=1.8e-19 Score=147.48 Aligned_cols=170 Identities=11% Similarity=0.092 Sum_probs=124.3
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p 123 (244)
.+.+++.++ .++..+|||+|||+|.++..+++.. |..+ ++++|+ +.+++.++++ ++++++.+|..+. ++
T Consensus 34 ~~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 34 RKDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGH-VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD 111 (231)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC
Confidence 345666666 6777899999999999999999885 5678 999999 9998877642 5799999998764 45
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccH----------------h
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDI----------------F 185 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~----------------~ 185 (244)
. .|+|++.+++|++++. .++++++.++|+|||++++.+...+... .+.......+.. .
T Consensus 112 ~~~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 187 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP--GFKQLYFFYFKYIMPLFGKLFAKSYKEYS 187 (231)
T ss_pred CCCccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh--HHHHHHHHHHcChhHHhhHHhcCCHHHHH
Confidence 4 4999999999998876 4889999999999999999887544331 111000000000 0
Q ss_pred hhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc-ceeEEEeecC
Q 041308 186 VMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI-IFTLFLSSKS 230 (244)
Q Consensus 186 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~~~~~~ 230 (244)
... .......+.++++++++++||+.+++.... ++...+++.|
T Consensus 188 ~~~--~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 188 WLQ--ESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHH--HHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 000 011234578999999999999999998877 5666776654
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.83 E-value=1.7e-19 Score=150.21 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=120.7
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc--
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV-- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~-- 124 (244)
.+.+++.++ +++..+|||||||+|..+..+++.+ ..+ ++++|+ +.+++.++++ .++.++.+|+.+. +|.
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~-v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAH-VHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCE-EEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 455777776 7888999999999999999998764 567 999999 9998888753 5799999999764 664
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++..+++|++.++...++++++++|||||++++.|....... .+...... ... .......+.+++.+
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~--~~~~~~~~-----~~~--~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIE--NWDEEFKA-----YIK--KRKYTLIPIQEYGD 188 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccccc--CcHHHHHH-----HHH--hcCCCCCCHHHHHH
Confidence 4999999999999876678999999999999999999998665431 11111100 011 11223458899999
Q ss_pred HHHhCCCCeEEEEEcc
Q 041308 205 LGFSTGFPHLRAFISI 220 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~ 220 (244)
+++++||+.+...+..
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999988764
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.82 E-value=3.8e-19 Score=147.73 Aligned_cols=171 Identities=16% Similarity=0.115 Sum_probs=118.2
Q ss_pred HHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCC
Q 041308 40 LMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDM 118 (244)
Q Consensus 40 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~ 118 (244)
.|.+........ ...+++.++ ..+..+|||+|||+|.++..+++++|+.+ ++++|+ +.|++.+++ .+++++.+|+
T Consensus 6 ~y~~~~~~~~~~-~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~-v~gvD~s~~~~~~a~~-~~~~~~~~d~ 81 (255)
T PRK14103 6 VYLAFADHRGRP-FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAV-IEALDSSPEMVAAARE-RGVDARTGDV 81 (255)
T ss_pred HHHHHHhHhhCH-HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHh-cCCcEEEcCh
Confidence 344443333333 356777776 67779999999999999999999999888 999999 999999876 4789999998
Q ss_pred CCCCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh---hcccHh-hhhhhcc
Q 041308 119 FKSIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL---LEGDIF-VMTIYRA 192 (244)
Q Consensus 119 ~~~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~---~~~d~~-~~~~~~~ 192 (244)
.+..+. .|+|+++.++||+++. .+++++++++|||||++++.................. .+.... ... ...
T Consensus 82 ~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~ 158 (255)
T PRK14103 82 RDWKPKPDTDVVVSNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIP-FRV 158 (255)
T ss_pred hhCCCCCCceEEEEehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccc-ccc
Confidence 654332 5999999999999875 5889999999999999998743211110000000000 010000 000 011
Q ss_pred CceecCHHHHHHHHHhCCCCeEEEE
Q 041308 193 KGKHKTEQEFKQLGFSTGFPHLRAF 217 (244)
Q Consensus 193 ~~~~~t~~e~~~ll~~aGf~~~~~~ 217 (244)
+....+.+++.++|+++||++...+
T Consensus 159 ~~~~~~~~~~~~~l~~aGf~v~~~~ 183 (255)
T PRK14103 159 GAVVQTPAGYAELLTDAGCKVDAWE 183 (255)
T ss_pred CcCCCCHHHHHHHHHhCCCeEEEEe
Confidence 2344689999999999999865444
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.80 E-value=1.2e-18 Score=150.29 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=115.6
Q ss_pred hHHHhccCCCC-----CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCC
Q 041308 53 MTSVLDGYDGF-----KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMF 119 (244)
Q Consensus 53 ~~~l~~~~~~~-----~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~ 119 (244)
.+.+++... . ++..+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.+++. ++++++.+|+.
T Consensus 102 ~~~~l~~~~-~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~-v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~ 178 (340)
T PLN02244 102 IEESLAWAG-VPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GAN-VKGITLSPVQAARANALAAAQGLSDKVSFQVADAL 178 (340)
T ss_pred HHHHHHhcC-CCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence 344555554 4 567899999999999999999887 567 999999 9998877642 57999999997
Q ss_pred CC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCc--hHHhhhhhcccHhhhhhhccCc
Q 041308 120 KS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNE--SQRTRALLEGDIFVMTIYRAKG 194 (244)
Q Consensus 120 ~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~ 194 (244)
+. ++. .|+|++..++||+++. .+++++++++|||||++++.++........ .........++..... ....
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~--~~~p 254 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAA--YYLP 254 (340)
T ss_pred cCCCCCCCccEEEECCchhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhh--ccCC
Confidence 64 554 4999999999999875 589999999999999999998754322110 0000000111111111 0111
Q ss_pred eecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...+.+++.++++++||..+++.+..
T Consensus 255 ~~~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 255 AWCSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred CCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence 23478999999999999999988765
No 13
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.79 E-value=9e-19 Score=149.51 Aligned_cols=149 Identities=23% Similarity=0.239 Sum_probs=114.1
Q ss_pred HHhccCCCC-CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCc--ce
Q 041308 55 SVLDGYDGF-KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHV--VD 126 (244)
Q Consensus 55 ~l~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~--~D 126 (244)
.+++... + .+..+|||||||+|.++..+++..+..+ ++++|. +.|++.++++ .+++++.+|+.+. ++. .|
T Consensus 103 ~~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~-VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFD 180 (340)
T PLN02490 103 DALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYAD 180 (340)
T ss_pred HHHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCcee
Confidence 3455444 3 3567999999999999999998887778 999999 9999988764 5789999998764 444 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHH
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLG 206 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll 206 (244)
+|++..++|++++.+ .+|++++++|||||++++.+...+.. +..+ ...+..+ ...+.+++.+++
T Consensus 181 vVIs~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r--~~~~~~~--------~~~t~eEl~~lL 244 (340)
T PLN02490 181 RYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHPTF----WLSR--FFADVWM--------LFPKEEEYIEWF 244 (340)
T ss_pred EEEEcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCcch----hHHH--Hhhhhhc--------cCCCHHHHHHHH
Confidence 999999999999874 78999999999999999987644321 1111 1111111 125789999999
Q ss_pred HhCCCCeEEEEEccc
Q 041308 207 FSTGFPHLRAFISII 221 (244)
Q Consensus 207 ~~aGf~~~~~~~~~~ 221 (244)
+++||+.+++..+..
T Consensus 245 ~~aGF~~V~i~~i~~ 259 (340)
T PLN02490 245 TKAGFKDVKLKRIGP 259 (340)
T ss_pred HHCCCeEEEEEEcCh
Confidence 999999999877643
No 14
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.78 E-value=4.9e-18 Score=152.99 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=119.5
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc--
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-- 124 (244)
+.+++.+. +++..+|||||||+|..+..+++.. +.+ ++++|+ +.+++.|+++ .++++..+|+.+. +|.
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVH-VVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 44677776 6777899999999999999998765 678 999999 8999888643 5799999999875 554
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++..+++|+++. .+++++++++|||||++++.+.........+.. ... .. ..+....+.+++.+
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~------~~~--~~--~~g~~~~~~~~~~~ 400 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSPEF------AEY--IK--QRGYDLHDVQAYGQ 400 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHH------HHH--HH--hcCCCCCCHHHHHH
Confidence 4999999999999876 488999999999999999998866543211111 011 11 22345678999999
Q ss_pred HHHhCCCCeEEEEEccc
Q 041308 205 LGFSTGFPHLRAFISII 221 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~ 221 (244)
+++++||.++.+.+...
T Consensus 401 ~l~~aGF~~i~~~d~~~ 417 (475)
T PLN02336 401 MLKDAGFDDVIAEDRTD 417 (475)
T ss_pred HHHHCCCeeeeeecchH
Confidence 99999999998876554
No 15
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.77 E-value=1e-17 Score=134.01 Aligned_cols=164 Identities=16% Similarity=0.150 Sum_probs=117.6
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC------CCeEEEeec-hHHHHhCCCC---------CCeeEEeC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF------ICEGINFDL-PEVVAKAPSI---------PEVTHIGG 116 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~------~~~~~~~D~-~~~i~~a~~~---------~~i~~~~g 116 (244)
-+..+..+. .....++||++||||.++-.+++..+. .+ ++++|+ |+|++.++++ .++.++++
T Consensus 89 Kd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~-V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~ 166 (296)
T KOG1540|consen 89 KDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESK-VTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG 166 (296)
T ss_pred HHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCce-EEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC
Confidence 344555665 445589999999999999999998766 56 999999 9999988753 45899999
Q ss_pred CCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhh-hhh---
Q 041308 117 DMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFV-MTI--- 189 (244)
Q Consensus 117 d~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~-~~~--- 189 (244)
|..+. +|. .|.+++.+-+.++++.+ +.|++++|+|||||++.+.|.-.-+.+.-.+... +..++... +.-
T Consensus 167 dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~-~ysf~VlpvlG~~ia 243 (296)
T KOG1540|consen 167 DAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLEFSKVENEPLKWFYD-QYSFDVLPVLGEIIA 243 (296)
T ss_pred CcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEEccccccHHHHHHHH-hhhhhhhchhhHhhh
Confidence 99764 776 49999999999999874 8899999999999999999985443211111111 11122110 000
Q ss_pred -------h--ccCceecCHHHHHHHHHhCCCCeEE-EEEccc
Q 041308 190 -------Y--RAKGKHKTEQEFKQLGFSTGFPHLR-AFISII 221 (244)
Q Consensus 190 -------~--~~~~~~~t~~e~~~ll~~aGf~~~~-~~~~~~ 221 (244)
+ ..-.+..+.++++.+.++|||+.+. .+....
T Consensus 244 gd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~~ye~lt~ 285 (296)
T KOG1540|consen 244 GDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVNGYENLTF 285 (296)
T ss_pred hhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccccccccee
Confidence 0 0012334788999999999999987 544433
No 16
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.77 E-value=4.3e-17 Score=133.63 Aligned_cols=172 Identities=15% Similarity=0.115 Sum_probs=123.2
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-C
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-I 122 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~ 122 (244)
...+++.+. ..+..+|||+|||+|.++..+++.+| ..+ ++++|. +.+++.+++. .++++..+|+.+. .
T Consensus 40 ~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 40 RRKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGE-VVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred HHHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 344566665 55668999999999999999999987 678 999999 8888877753 4689999998764 3
Q ss_pred Cc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhh---hhccC----
Q 041308 123 HV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMT---IYRAK---- 193 (244)
Q Consensus 123 p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~---- 193 (244)
+. .|+|++.+++|++++. ..+++++.+.|+|||++++.+...+.... .............. ....+
T Consensus 118 ~~~~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEA 192 (239)
T ss_pred CCCCccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHH
Confidence 33 4999999999998875 58899999999999999999886654321 10000000000000 00000
Q ss_pred --------ceecCHHHHHHHHHhCCCCeEEEEEcc-ceeEEEeecCc
Q 041308 194 --------GKHKTEQEFKQLGFSTGFPHLRAFISI-IFTLFLSSKSN 231 (244)
Q Consensus 194 --------~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~~~~~~~ 231 (244)
...++.++|.++++++||+.+++.... +-..++.++|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 193 YSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 123578899999999999999998864 45567776654
No 17
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.74 E-value=3.5e-17 Score=130.75 Aligned_cols=142 Identities=14% Similarity=0.081 Sum_probs=107.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~- 124 (244)
..+++.++ ..+..+|||+|||+|..+..++++. .+ ++++|+ +.+++.+++. .++++..+|+.+. ++.
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~g--~~-V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAANG--FD-VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHCC--CE-EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 34666666 5556899999999999999999863 46 999999 9999887753 4588888998664 444
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++..++|++++++...++++++++|+|||++++.+....+....+ ......++.+|+.+
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~el~~ 158 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-----------------VGFPFAFKEGELRR 158 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC-----------------CCCCCccCHHHHHH
Confidence 5999999999999988889999999999999999877665433221000 00012357889999
Q ss_pred HHHhCCCCeEEEEE
Q 041308 205 LGFSTGFPHLRAFI 218 (244)
Q Consensus 205 ll~~aGf~~~~~~~ 218 (244)
+++ ||+++....
T Consensus 159 ~~~--~~~~~~~~~ 170 (197)
T PRK11207 159 YYE--GWEMVKYNE 170 (197)
T ss_pred HhC--CCeEEEeeC
Confidence 996 899888744
No 18
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.74 E-value=7e-17 Score=131.04 Aligned_cols=170 Identities=16% Similarity=0.098 Sum_probs=121.0
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc--
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV-- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~-- 124 (244)
+.+++.+. ..+..+|||+|||+|.++..+++.+|. .+ ++++|+ +.+++.++++ .++++..+|+.+. .+.
T Consensus 29 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~-~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 29 RRAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGK-VTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCce-EEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCc
Confidence 34555554 456789999999999999999999986 67 999999 8888877653 5789999999764 433
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhh----h--cc------
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTI----Y--RA------ 192 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~----~--~~------ 192 (244)
.|+|++..++|+.++. ..+++++.+.|+|||++++.+...+... +.... .......++.. . ..
T Consensus 107 ~D~i~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDI--QKALREMYRVLKPGGRLVILEFSKPANA--LLKKF-YKFYLKNVLPSIGGLISKNAEAYTYL 181 (223)
T ss_pred EEEEEEeeeeCCcccH--HHHHHHHHHHcCCCcEEEEEEecCCCch--hhHHH-HHHHHHHhhhhhhhhhcCCchhhHHH
Confidence 4999999999998875 5889999999999999999987544321 11100 00000000000 0 00
Q ss_pred ---CceecCHHHHHHHHHhCCCCeEEEEEccce-eEEEeecC
Q 041308 193 ---KGKHKTEQEFKQLGFSTGFPHLRAFISIIF-TLFLSSKS 230 (244)
Q Consensus 193 ---~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~~~~~~~ 230 (244)
.....+.++|.++++++||+.+++++.... ..++++++
T Consensus 182 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 182 PESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 012347889999999999999999888765 45555553
No 19
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.74 E-value=1e-17 Score=139.69 Aligned_cols=163 Identities=12% Similarity=-0.003 Sum_probs=114.6
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
.+.+++.++ ++++.+|||||||-|.++..+++++ +++ ++++.+ ++..+.+++. +++++...|+.+.-+.
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~-v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCH-VTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---E-EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 456888888 9999999999999999999999998 788 999999 8887776532 6899999998654345
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|.|++.-++.|+..++...+++++.+.|||||++++...+..+.. .........+..... ..++|...+..++..
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~---~~~~~~~~~~~i~ky-iFPgg~lps~~~~~~ 203 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPP---YHAERRSSSDFIRKY-IFPGGYLPSLSEILR 203 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HH---HHHCTTCCCHHHHHH-TSTTS---BHHHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccccc---chhhcCCCceEEEEe-eCCCCCCCCHHHHHH
Confidence 6999999999999988888999999999999999999877765431 111000011211111 257888889999999
Q ss_pred HHHhCCCCeEEEEEccce
Q 041308 205 LGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~ 222 (244)
.++++||++..+.....+
T Consensus 204 ~~~~~~l~v~~~~~~~~h 221 (273)
T PF02353_consen 204 AAEDAGLEVEDVENLGRH 221 (273)
T ss_dssp HHHHTT-EEEEEEE-HHH
T ss_pred HHhcCCEEEEEEEEcCcC
Confidence 999999999999887543
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=2.2e-17 Score=141.18 Aligned_cols=164 Identities=15% Similarity=0.077 Sum_probs=113.4
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-------CCCeeEEeCCCCCC-CCc-c
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-------IPEVTHIGGDMFKS-IHV-V 125 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-------~~~i~~~~gd~~~~-~p~-~ 125 (244)
+...++ ...+.+|||||||+|.++..+++.++. + ++++|. +.++..++. ..+++++.+|+.+. .+. .
T Consensus 114 l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~-V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 114 VLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-L-VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 444554 234589999999999999999988764 6 999999 766653321 25799999988553 333 4
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC-ceecCHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-GKHKTEQEFKQ 204 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~t~~e~~~ 204 (244)
|+|++..++||..+. ..+|++++++|+|||.+++.+.+.+........ ....+.. ..+ -..+|.+++.+
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~-p~~~y~~-------~~~~~~lps~~~l~~ 260 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLV-PGDRYAK-------MRNVYFIPSVPALKN 260 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccC-chhHHhc-------CccceeCCCHHHHHH
Confidence 999999999998876 478999999999999999876655543221100 0000000 011 12358899999
Q ss_pred HHHhCCCCeEEEEEccceeEEEeecCchhHH
Q 041308 205 LGFSTGFPHLRAFISIIFTLFLSSKSNFSFW 235 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~~ 235 (244)
+++++||+.+++.+..... ..+...+-|
T Consensus 261 ~L~~aGF~~i~~~~~~~t~---~~eqr~t~w 288 (322)
T PRK15068 261 WLERAGFKDVRIVDVSVTT---TEEQRKTEW 288 (322)
T ss_pred HHHHcCCceEEEEeCCCCC---ccccccccC
Confidence 9999999999998765432 334444444
No 21
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.74 E-value=2.2e-17 Score=134.45 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=109.4
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEecccccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTT 136 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~ 136 (244)
.+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.++++ +++++..+|+.+. .+. .|+|++..++||
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~-v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQ-LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHh
Confidence 3799999999999999999998888 999999 8888877752 5789999998654 444 599999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
+.+. ..++++++++|||||++++.+...+... +... + .......+.++|.++++++||++++.
T Consensus 80 ~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~------~-------~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 80 IKDK--MDLFSNISRHLKDGGHLVLADFIANLLS--AIEH------E-------ETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCCH--HHHHHHHHHHcCCCCEEEEEEcccccCc--cccc------c-------ccccccCCHHHHHHHHHHCCCeEEEe
Confidence 9875 5899999999999999999987533211 0000 0 01112457899999999999999998
Q ss_pred EEcccee
Q 041308 217 FISIIFT 223 (244)
Q Consensus 217 ~~~~~~~ 223 (244)
.++...+
T Consensus 143 ~~~~~~~ 149 (224)
T smart00828 143 VDASLEI 149 (224)
T ss_pred EECcHhH
Confidence 8875443
No 22
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.73 E-value=1.5e-17 Score=120.70 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=83.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCC-CCC--CCcceEEEecc-
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDM-FKS--IHVVDAIFMKW- 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~-~~~--~p~~D~v~~~~- 132 (244)
+..+|||+|||+|.++..+++.+|..+ ++++|. |.+++.++++ ++++++.+|+ ... .+..|+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGAR-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSE-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence 357999999999999999999899999 999999 9999888753 7999999999 332 33469999999
Q ss_pred ccccCCH-HHHHHHHHHHHHHcCCCCEEEEec
Q 041308 133 VLTTWTD-DECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 133 ~lh~~~~-~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+|++.+ ++..++++++++.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 6665443 577899999999999999999865
No 23
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.73 E-value=1.8e-16 Score=131.88 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=110.7
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCCCc--ceEE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSIHV--VDAI 128 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~p~--~D~v 128 (244)
...+++.++ .++..+|||||||+|.++..+++.+|..+ ++++|+ +.|++.+++. +++++..+|+.+..+. .|+|
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAAR-ITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 456777776 77789999999999999999999998888 999999 9999999865 7899999998654332 5999
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh--hcccHhhhhhhcc---CceecCHHHHH
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL--LEGDIFVMTIYRA---KGKHKTEQEFK 203 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~---~~~~~t~~e~~ 203 (244)
+++.++|++++. ..++++++++|||||++++.-. +....+...... .....+....... .....+..++.
T Consensus 98 ~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~~~---~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 172 (258)
T PRK01683 98 FANASLQWLPDH--LELFPRLVSLLAPGGVLAVQMP---DNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYY 172 (258)
T ss_pred EEccChhhCCCH--HHHHHHHHHhcCCCcEEEEECC---CCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHH
Confidence 999999999875 4889999999999999998532 111111100000 0000001000001 12335778899
Q ss_pred HHHHhCCCCe
Q 041308 204 QLGFSTGFPH 213 (244)
Q Consensus 204 ~ll~~aGf~~ 213 (244)
+++.++|+.+
T Consensus 173 ~~l~~~g~~v 182 (258)
T PRK01683 173 DALAPAACRV 182 (258)
T ss_pred HHHHhCCCce
Confidence 9999999874
No 24
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.73 E-value=3.3e-17 Score=126.20 Aligned_cols=137 Identities=22% Similarity=0.252 Sum_probs=97.5
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEEEeccccccCC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWT 138 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~ 138 (244)
..+..+|||+|||+|.++..+.+... + ++++|+ +.+++. ..+....-+.... .+. .|+|++..++||++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~-~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--E-VTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--E-EEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--E-EEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence 45678999999999999999976644 6 999999 889887 2222222211122 222 49999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 139 DDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
+. ..+|+++.+.|||||++++.+...... .......+ ..... .......++.++|+++++++||++++
T Consensus 93 d~--~~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 DP--EEFLKELSRLLKPGGYLVISDPNRDDP----SPRSFLKW-RYDRP--YGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HH--HHHHHHHHHCEEEEEEEEEEEEBTTSH----HHHHHHHC-CGTCH--HTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cH--HHHHHHHHHhcCCCCEEEEEEcCCcch----hhhHHHhc-CCcCc--cCceeccCCHHHHHHHHHHCCCEEEE
Confidence 74 689999999999999999999865321 11111111 11111 01345778999999999999999876
No 25
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.73 E-value=3.4e-17 Score=138.74 Aligned_cols=167 Identities=14% Similarity=0.060 Sum_probs=112.8
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC-------CCCCeeEEeCCCCCC--CCc
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP-------SIPEVTHIGGDMFKS--IHV 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~-------~~~~i~~~~gd~~~~--~p~ 124 (244)
.++..+. ..++.+|||||||+|.++..++..++. + ++++|. +.|+..++ ...++.+..+++.+. ...
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~-v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-S-LVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 3555554 344589999999999999999987664 6 999999 77765432 125788888877443 223
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++..++||+.+. ..+|++++++|||||.|++.+...+.......... .. ...+.. .-...+.+++..
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-~r--y~k~~n----v~flpS~~~L~~ 259 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-DR--YAKMKN----VYFIPSVSALKN 259 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCch-HH--HHhccc----cccCCCHHHHHH
Confidence 5999999999999876 47899999999999999998766543321110000 00 000000 012357899999
Q ss_pred HHHhCCCCeEEEEEccceeEEEeecCchhHHH
Q 041308 205 LGFSTGFPHLRAFISIIFTLFLSSKSNFSFWI 236 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (244)
+++++||+.+++........ .+...+-|.
T Consensus 260 ~L~~aGF~~V~i~~~~~tt~---~eqr~t~w~ 288 (314)
T TIGR00452 260 WLEKVGFENFRILDVLKTTP---EEQRKTDWI 288 (314)
T ss_pred HHHHCCCeEEEEEeccCCCH---HHhhhhhhh
Confidence 99999999999877654321 244455553
No 26
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.73 E-value=4.8e-17 Score=135.11 Aligned_cols=162 Identities=17% Similarity=0.088 Sum_probs=111.2
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC--CCc
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS--IHV 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~--~p~ 124 (244)
.+++.++ ++..+|||+|||+|.++..+++.. .+ ++++|+ +.|++.|+++ ++++++.+|+.+. .+.
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g--~~-v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAELG--HQ-VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 4555554 455799999999999999999874 46 999999 9999988753 5789999998543 232
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHh---hh---hhhccCcee
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIF---VM---TIYRAKGKH 196 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~---~~---~~~~~~~~~ 196 (244)
.|+|++..++||++++ ..+++++.++|||||++++........ ..........+.. +. .....-...
T Consensus 111 ~~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 185 (255)
T PRK11036 111 TPVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGL---LMHNMVAGNFDYVQAGMPKRKKRTLSPDYP 185 (255)
T ss_pred CCCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHH---HHHHHHccChHHHHhcCccccccCCCCCCC
Confidence 4999999999999876 478999999999999999875532210 0000000000000 00 000001234
Q ss_pred cCHHHHHHHHHhCCCCeEEEEEccceeEEE
Q 041308 197 KTEQEFKQLGFSTGFPHLRAFISIIFTLFL 226 (244)
Q Consensus 197 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~ 226 (244)
.+.+++.++++++||+++...-+....-++
T Consensus 186 ~~~~~l~~~l~~aGf~~~~~~gi~~~~~~~ 215 (255)
T PRK11036 186 LDPEQVYQWLEEAGWQIMGKTGVRVFHDYL 215 (255)
T ss_pred CCHHHHHHHHHHCCCeEeeeeeEEEEeecc
Confidence 578999999999999999877665444333
No 27
>PRK08317 hypothetical protein; Provisional
Probab=99.72 E-value=1e-16 Score=131.20 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=113.7
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc--
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-- 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-- 124 (244)
.+.+.++ +.+..+|||+|||+|.++..+++.+ |..+ ++++|. +.+++.+++. .++++..+|+.+. ++.
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~-v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGR-VVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 3555565 7778999999999999999999987 6778 999999 8888877653 6789999998653 443
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCch-HHhhhhhcccHhhhhhhccCceecCHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNES-QRTRALLEGDIFVMTIYRAKGKHKTEQEFK 203 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~ 203 (244)
.|+|++.++++|+++. ..+++++.++|+|||++++.+.........+ ............. .......+..++.
T Consensus 88 ~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 161 (241)
T PRK08317 88 FDAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWS----DHFADPWLGRRLP 161 (241)
T ss_pred ceEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHH----hcCCCCcHHHHHH
Confidence 4999999999999876 4789999999999999999886432210000 0000011111111 1122334567899
Q ss_pred HHHHhCCCCeEEEEEcc
Q 041308 204 QLGFSTGFPHLRAFISI 220 (244)
Q Consensus 204 ~ll~~aGf~~~~~~~~~ 220 (244)
++++++||..+.+....
T Consensus 162 ~~l~~aGf~~~~~~~~~ 178 (241)
T PRK08317 162 GLFREAGLTDIEVEPYT 178 (241)
T ss_pred HHHHHcCCCceeEEEEE
Confidence 99999999988876643
No 28
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.72 E-value=4e-17 Score=138.90 Aligned_cols=146 Identities=9% Similarity=-0.053 Sum_probs=105.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc--ceEEEeccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV--VDAIFMKWV 133 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~--~D~v~~~~~ 133 (244)
+..+|||||||+|.++..+++. +.+ ++++|. +.+++.|++. .+++++.+|+.+. .+. .|+|++..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~-V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GAT-VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCE-EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 4469999999999999988863 567 999999 9999988743 3789999987543 332 599999999
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC----ceecCHHHHHHHHHhC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK----GKHKTEQEFKQLGFST 209 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~t~~e~~~ll~~a 209 (244)
+||+++.. .++++++++|||||.+++........ .+.........+.... ..+ ...++.+++.++++++
T Consensus 208 LeHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~l--p~gth~~~~f~tp~eL~~lL~~a 280 (322)
T PLN02396 208 IEHVANPA--EFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRWL--PKGTHQWSSFVTPEELSMILQRA 280 (322)
T ss_pred HHhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhcC--CCCCcCccCCCCHHHHHHHHHHc
Confidence 99999874 89999999999999999987633211 0000000000011111 111 2357899999999999
Q ss_pred CCCeEEEEEcc
Q 041308 210 GFPHLRAFISI 220 (244)
Q Consensus 210 Gf~~~~~~~~~ 220 (244)
||+++++..+.
T Consensus 281 Gf~i~~~~G~~ 291 (322)
T PLN02396 281 SVDVKEMAGFV 291 (322)
T ss_pred CCeEEEEeeeE
Confidence 99999885543
No 29
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.72 E-value=1.3e-16 Score=133.71 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=110.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCc--ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHV--VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~--~D~v~~~ 131 (244)
+++..+|||+|||+|..+..+++. .+..+ ++++|. +.+++.++++ +++++..+|+.+. ++. .|+|++.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~-v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGK-VIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 567889999999999988877766 45567 999999 9999998863 6889999998663 444 4999999
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
.++|++++. .+++++++++|||||++++.+....... +.. ...+..+.. ...+...+.+++.++++++||
T Consensus 154 ~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~--~~~----~~~~~~~~~--~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 154 CVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL--PEE----IRNDAELYA--GCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred CcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC--CHH----HHHhHHHHh--ccccCCCCHHHHHHHHHHCCC
Confidence 999998765 4789999999999999999987654321 111 111222221 122445678999999999999
Q ss_pred CeEEEEE
Q 041308 212 PHLRAFI 218 (244)
Q Consensus 212 ~~~~~~~ 218 (244)
..+++..
T Consensus 224 ~~v~i~~ 230 (272)
T PRK11873 224 VDITIQP 230 (272)
T ss_pred CceEEEe
Confidence 9987744
No 30
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.70 E-value=1.2e-16 Score=124.09 Aligned_cols=181 Identities=12% Similarity=0.015 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------
Q 041308 36 KMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------ 108 (244)
Q Consensus 36 ~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------ 108 (244)
.....|++.|+.+.+.++..+-..+- -+....+|+||||||..-...-- -|..+ +|++|. +.|.+.+.+.
T Consensus 48 ~ft~~yne~~~~ykrelFs~i~~~~g-k~~K~~vLEvgcGtG~Nfkfy~~-~p~~s-vt~lDpn~~mee~~~ks~~E~k~ 124 (252)
T KOG4300|consen 48 NFTSIYNEIADSYKRELFSGIYYFLG-KSGKGDVLEVGCGTGANFKFYPW-KPINS-VTCLDPNEKMEEIADKSAAEKKP 124 (252)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhc-ccCccceEEecccCCCCcccccC-CCCce-EEEeCCcHHHHHHHHHHHhhccC
Confidence 34557888888876554444332221 34557889999999988765442 36778 999999 9888777642
Q ss_pred CCee-EEeCCCCCC--CCcc--eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhccc
Q 041308 109 PEVT-HIGGDMFKS--IHVV--DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGD 183 (244)
Q Consensus 109 ~~i~-~~~gd~~~~--~p~~--D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d 183 (244)
.++. |+.++..+. ++++ |+|++..+|.-..++ .+.|++++|+|||||+++++|.+..+.. .+..-++...+
T Consensus 125 ~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~--~k~L~e~~rlLRpgG~iifiEHva~~y~--~~n~i~q~v~e 200 (252)
T KOG4300|consen 125 LQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDP--VKQLNEVRRLLRPGGRIIFIEHVAGEYG--FWNRILQQVAE 200 (252)
T ss_pred cceEEEEeechhcCcccccCCeeeEEEEEEEeccCCH--HHHHHHHHHhcCCCcEEEEEecccccch--HHHHHHHHHhc
Confidence 5566 888877543 4554 999999999766664 6899999999999999999999877653 34434445555
Q ss_pred HhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEE
Q 041308 184 IFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFL 226 (244)
Q Consensus 184 ~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~ 226 (244)
-.... ...|+..|.+.|+. +++|-|+..+.+....+..+.
T Consensus 201 p~~~~--~~dGC~ltrd~~e~-Leda~f~~~~~kr~~~~ttw~ 240 (252)
T KOG4300|consen 201 PLWHL--ESDGCVLTRDTGEL-LEDAEFSIDSCKRFNFGTTWV 240 (252)
T ss_pred hhhhe--eccceEEehhHHHH-hhhcccccchhhcccCCceEE
Confidence 43333 56688888776655 589999999987776655544
No 31
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.70 E-value=1.6e-17 Score=127.30 Aligned_cols=137 Identities=22% Similarity=0.270 Sum_probs=100.4
Q ss_pred CCcceEEEEcCCccHHHHHHHH-HcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC-----cceEEEe
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQ-KHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH-----VVDAIFM 130 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~-~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p-----~~D~v~~ 130 (244)
+...+|||+|||+|.++..+++ ..|..+ ++++|. +.|++.|++. ++++|..+|+.+ ++ ..|+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCE-EEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEE
Confidence 3568999999999999999994 577888 999999 9999999862 689999999988 33 3599999
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhh-hccCceecCHHHHHHHHHhC
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTI-YRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~t~~e~~~ll~~a 209 (244)
..++|++++.+ .+++++.+.|+|||.+++.+...... ................ +...+. +.++|..++++|
T Consensus 80 ~~~l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a 151 (152)
T PF13847_consen 80 NGVLHHFPDPE--KVLKNIIRLLKPGGILIISDPNHNDE----LPEQLEELMNLYSEVWSMIYIGN--DKEEWKYILEEA 151 (152)
T ss_dssp ESTGGGTSHHH--HHHHHHHHHEEEEEEEEEEEEEHSHH----HHHHHHHHHHHHHHHHHHCC-----CCCGHHHHHHHT
T ss_pred cCchhhccCHH--HHHHHHHHHcCCCcEEEEEECChHHH----HHHHHHHHHHHHHHHhhhhhccc--CHHHHHHHHHhc
Confidence 99999999874 88999999999999999998862211 0001111111111100 011112 788999999999
Q ss_pred C
Q 041308 210 G 210 (244)
Q Consensus 210 G 210 (244)
|
T Consensus 152 g 152 (152)
T PF13847_consen 152 G 152 (152)
T ss_dssp T
T ss_pred C
Confidence 8
No 32
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=1.7e-16 Score=130.96 Aligned_cols=159 Identities=17% Similarity=0.089 Sum_probs=131.1
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
.+.+++.+. ++++.+|||||||-|.+++.+++++ +++ ++++++ +++.+.+++. .++++...|+.+..+.
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~-V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVT-VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCE-EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 455888888 9999999999999999999999998 888 999999 8888888762 5899999988655444
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|-|++.-+++|+..+.-...++++++.|+|||++++.....++.... ....+... . ..++|..++..++.+
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~----~~~~~i~~--y--iFPgG~lPs~~~i~~ 209 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR----RFPDFIDK--Y--IFPGGELPSISEILE 209 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc----cchHHHHH--h--CCCCCcCCCHHHHHH
Confidence 799999999999999888999999999999999999998877664221 00111111 1 257899999999999
Q ss_pred HHHhCCCCeEEEEEccce
Q 041308 205 LGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~ 222 (244)
...++||.+..++.+..+
T Consensus 210 ~~~~~~~~v~~~~~~~~h 227 (283)
T COG2230 210 LASEAGFVVLDVESLRPH 227 (283)
T ss_pred HHHhcCcEEehHhhhcHH
Confidence 999999999998877654
No 33
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.69 E-value=3.9e-16 Score=124.48 Aligned_cols=142 Identities=14% Similarity=0.061 Sum_probs=105.1
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-ce
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-VD 126 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~D 126 (244)
.+++.++ ..+..+|||+|||+|.++..++++. .+ ++++|. +.+++.+++. -++.+...|+... ++. .|
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~g--~~-V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLAG--YD-VRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHCC--Ce-EEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 4555555 4456899999999999999999863 56 999999 9999877642 2366777777543 333 59
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHH
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLG 206 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll 206 (244)
+|++..++|++++++...++++++++|+|||++++.+....+..... .+.....+.+++.+++
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~-----------------~~~~~~~~~~el~~~f 159 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH-----------------MPFSFTFKEDELRQYY 159 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC-----------------CCcCccCCHHHHHHHh
Confidence 99999999999988888999999999999999888776433221000 0112346789999999
Q ss_pred HhCCCCeEEEEEc
Q 041308 207 FSTGFPHLRAFIS 219 (244)
Q Consensus 207 ~~aGf~~~~~~~~ 219 (244)
. +|+++.....
T Consensus 160 ~--~~~~~~~~e~ 170 (195)
T TIGR00477 160 A--DWELLKYNEA 170 (195)
T ss_pred C--CCeEEEeecc
Confidence 5 5888887643
No 34
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.68 E-value=6.6e-16 Score=125.43 Aligned_cols=182 Identities=10% Similarity=-0.010 Sum_probs=120.5
Q ss_pred ccccccCchHHHHHHHHHHcccccchHHHhccCCC-CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhC
Q 041308 28 YSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDG-FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKA 105 (244)
Q Consensus 28 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a 105 (244)
|+.+...+.....+...+......+.+.+++.+.. ..+..+|||+|||+|.++..+++.. .+ ++++|+ +.|++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~-v~gvD~s~~~i~~a 93 (219)
T TIGR02021 17 WARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG--AI-VKAVDISEQMVQMA 93 (219)
T ss_pred HHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC--CE-EEEEECCHHHHHHH
Confidence 44445444444455554433333444445544431 3456899999999999999998763 46 999999 9999888
Q ss_pred CCC-------CCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhh
Q 041308 106 PSI-------PEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRA 178 (244)
Q Consensus 106 ~~~-------~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~ 178 (244)
+++ .++.+..+|+.+.....|+|++..+++|+++++..++++++.+.+++++.+.+... . .....
T Consensus 94 ~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~----~---~~~~~- 165 (219)
T TIGR02021 94 RNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK----T---AWLAF- 165 (219)
T ss_pred HHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC----c---hHHHH-
Confidence 753 37899999986644346999999999999887788899999999987655554211 1 11100
Q ss_pred hhcccHhhhhh-hccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 179 LLEGDIFVMTI-YRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 179 ~~~~d~~~~~~-~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...+....... ....-..++.+++.++++++||+++......
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 166 LKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred HHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 01111110000 0112345689999999999999999887654
No 35
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.67 E-value=1.8e-15 Score=125.41 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=113.8
Q ss_pred HHHHHHHHHHcccc------cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-
Q 041308 37 MNGLMRKAMSRVFV------PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI- 108 (244)
Q Consensus 37 ~~~~f~~~~~~~~~------~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~- 108 (244)
+.+.|+++...|.. ..++.+++.++ ..+..+|||+|||+|.++..+.+. ..+ ++++|+ +.|++.+++.
T Consensus 9 i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 9 IAAAFGRAAAHYEQHAELQRQSADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQ-VTALDLSPPMLAQARQKD 84 (251)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhC
Confidence 34455555444332 33455677766 455689999999999999988764 356 999999 9999988875
Q ss_pred CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHh
Q 041308 109 PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIF 185 (244)
Q Consensus 109 ~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~ 185 (244)
..+.++.+|+.+. ++. .|+|++..++|+.++. ..+++++.++|+|||.+++........ +.........+
T Consensus 85 ~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~---~el~~~~~~~~-- 157 (251)
T PRK10258 85 AADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSL---PELHQAWQAVD-- 157 (251)
T ss_pred CCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCch---HHHHHHHHHhc--
Confidence 4567889998663 544 4999999999987765 588999999999999999987643322 11110000000
Q ss_pred hhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 186 VMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 186 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
.. .......+.+++.+++...|+..
T Consensus 158 -~~--~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 158 -ER--PHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred -cC--CccccCCCHHHHHHHHHhCCcee
Confidence 00 12244568899999999988764
No 36
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.67 E-value=1e-15 Score=137.97 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=114.6
Q ss_pred cccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----CCCeeEEeCCCCCC--
Q 041308 49 FVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----IPEVTHIGGDMFKS-- 121 (244)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~~~i~~~~gd~~~~-- 121 (244)
.......+++.++ ..+..+|||||||+|.++..+++... + ++++|. +.+++.+++ .+++.++.+|+.+.
T Consensus 22 ~~~~~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~-v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~ 97 (475)
T PLN02336 22 DKEERPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--Q-VIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL 97 (475)
T ss_pred CchhhhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--E-EEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc
Confidence 3334456777776 55667999999999999999998753 5 999999 999987653 26789999998642
Q ss_pred -CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecC
Q 041308 122 -IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 122 -~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
+|. .|+|++..++||+++++..+++++++++|||||++++.|.......... .. ......++
T Consensus 98 ~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~~---------~~~~~~~~ 162 (475)
T PLN02336 98 NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------RK---------NNPTHYRE 162 (475)
T ss_pred CCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------cc---------CCCCeecC
Confidence 443 4999999999999998888999999999999999999997654431100 00 12234456
Q ss_pred HHHHHHHHHhCCCCeEEE
Q 041308 199 EQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~ 216 (244)
..+|.+++.++||.....
T Consensus 163 ~~~~~~~f~~~~~~~~~~ 180 (475)
T PLN02336 163 PRFYTKVFKECHTRDEDG 180 (475)
T ss_pred hHHHHHHHHHheeccCCC
Confidence 889999999999997754
No 37
>PRK06922 hypothetical protein; Provisional
Probab=99.66 E-value=6.1e-16 Score=140.10 Aligned_cols=142 Identities=17% Similarity=0.206 Sum_probs=106.1
Q ss_pred CcccccccCchHHHHHHHHHHccccc--chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHH
Q 041308 26 PAYSYYGKKPKMNGLMRKAMSRVFVP--FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVV 102 (244)
Q Consensus 26 ~~~~~~~~~~~~~~~f~~~~~~~~~~--~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i 102 (244)
.+|+.+...++..+.|...|...... ..+.....++ +.++.+|||+|||+|..+..+++.+|+.+ ++++|+ +.|+
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~k-VtGIDIS~~ML 455 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKR-IYGIDISENVI 455 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCE-EEEEECCHHHH
Confidence 34566666666666666555432211 1222233344 55678999999999999999999999999 999999 8999
Q ss_pred HhCCCC-----CCeeEEeCCCCCC---CCc--ceEEEeccccccC-----------CHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 103 AKAPSI-----PEVTHIGGDMFKS---IHV--VDAIFMKWVLTTW-----------TDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 103 ~~a~~~-----~~i~~~~gd~~~~---~p~--~D~v~~~~~lh~~-----------~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+.++++ .+++++.+|+.+. ++. .|+|+++.++|++ ++++..++|++++++|||||++++
T Consensus 456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 888753 4678888998652 333 4999999999976 245678999999999999999999
Q ss_pred ecccCCCC
Q 041308 162 CEPVLPDD 169 (244)
Q Consensus 162 ~d~~~~~~ 169 (244)
.|...++.
T Consensus 536 ~D~v~~E~ 543 (677)
T PRK06922 536 RDGIMTED 543 (677)
T ss_pred EeCccCCc
Confidence 99766544
No 38
>PRK05785 hypothetical protein; Provisional
Probab=99.66 E-value=2.2e-15 Score=122.82 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=105.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEEEeccccccCCHH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDD 140 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~ 140 (244)
+..+|||+|||||.++..+++.. +.+ ++++|. ++|++.+++. ..++.+|+.+. ++. .|+|++..++||+++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~-v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYY-VVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCE-EEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence 46899999999999999999886 457 999999 9999999864 34677888653 554 4999999999999876
Q ss_pred HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcc-c--HhhhhhhccC-------------ceecCHHHHHH
Q 041308 141 ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEG-D--IFVMTIYRAK-------------GKHKTEQEFKQ 204 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~-d--~~~~~~~~~~-------------~~~~t~~e~~~ 204 (244)
.+++++++|+|||. ++++|...++. ........++ . +.... ...+ ....+.+++.+
T Consensus 127 --~~~l~e~~RvLkp~--~~ile~~~p~~---~~~~~~~~~y~~~~~P~~~-~~~~~~~~~Y~yl~~si~~f~~~~~~~~ 198 (226)
T PRK05785 127 --EKVIAEFTRVSRKQ--VGFIAMGKPDN---VIKRKYLSFYLRYIMPYIA-CLAGAKCRDYKYIYYIYERLPTNSFHRE 198 (226)
T ss_pred --HHHHHHHHHHhcCc--eEEEEeCCCCc---HHHHHHHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 47899999999993 44556544433 1111111111 0 00010 0111 12247889999
Q ss_pred HHHhCCCCeEEEEEccc-eeEEEeecC
Q 041308 205 LGFSTGFPHLRAFISII-FTLFLSSKS 230 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~-~~~~~~~~~ 230 (244)
+++++| ..++.+...+ ...+.+++|
T Consensus 199 ~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 199 IFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHh-CceEEEEccccEEEEEEEee
Confidence 999984 7678877765 445666665
No 39
>PRK04266 fibrillarin; Provisional
Probab=99.66 E-value=5.6e-15 Score=120.04 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=98.6
Q ss_pred cCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHH----hCCCCCCeeEEeCCCCCC-----CCc-ceE
Q 041308 59 GYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVA----KAPSIPEVTHIGGDMFKS-----IHV-VDA 127 (244)
Q Consensus 59 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~----~a~~~~~i~~~~gd~~~~-----~p~-~D~ 127 (244)
.++ ++++.+|||+|||+|.++..+++..+..+ ++++|. +.|++ .+++..++.++.+|..++ ++. .|+
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~-V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGV-VYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCe-EEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence 355 77889999999999999999999887667 999999 87776 444447899999998653 222 488
Q ss_pred EEeccccccCCHH-HHHHHHHHHHHHcCCCCEEEEe-cccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 128 IFMKWVLTTWTDD-ECKLIMENYYKALLAGRKLIAC-EPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 128 v~~~~~lh~~~~~-~~~~~l~~~~~~L~pgG~lii~-d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|++ +.+++ +...++++++++|||||+++|. .+- +-+...+ .. +..++..++
T Consensus 145 i~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~-~~d~~~~--------------------~~-~~~~~~~~~ 197 (226)
T PRK04266 145 IYQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKAR-SIDVTKD--------------------PK-EIFKEEIRK 197 (226)
T ss_pred EEE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEecc-cccCcCC--------------------HH-HHHHHHHHH
Confidence 873 33332 3346789999999999999993 321 0000000 00 112344699
Q ss_pred HHhCCCCeEEEEEccc---eeEEEeec
Q 041308 206 GFSTGFPHLRAFISII---FTLFLSSK 229 (244)
Q Consensus 206 l~~aGf~~~~~~~~~~---~~~~~~~~ 229 (244)
++++||+.++..+... ++.+++.+
T Consensus 198 l~~aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 198 LEEGGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred HHHcCCeEEEEEcCCCCcCCeEEEEEE
Confidence 9999999999988743 25555544
No 40
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.66 E-value=2.3e-16 Score=110.49 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=75.1
Q ss_pred EEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHH
Q 041308 70 VDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 70 LDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~ 142 (244)
||+|||+|..+..+++. +..+ ++++|. +.+++.+++. .++++..+|+.+. ++. .|+|++..++||+++ .
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~-v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGAS-VTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--P 76 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCE-EEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--H
T ss_pred CEecCcCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--H
Confidence 89999999999999998 7777 999999 9999888863 5677999998775 555 399999999999944 4
Q ss_pred HHHHHHHHHHcCCCCEEEE
Q 041308 143 KLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii 161 (244)
.++++++.|+|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 6999999999999999986
No 41
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.65 E-value=3.1e-15 Score=124.62 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=83.7
Q ss_pred CCcceEEEEcCCccH----HHHHHHHHcC-----CCCeEEEeec-hHHHHhCCCC-------------------------
Q 041308 64 KGVKRLVDVGGSAGD----CLRIILQKHC-----FICEGINFDL-PEVVAKAPSI------------------------- 108 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~~D~-~~~i~~a~~~------------------------- 108 (244)
.+..+|+|+|||||. ++..+.+..+ +.+ ++++|+ +.|++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~-I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK-ILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE-EEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 345799999999997 4556666554 467 999999 9999998863
Q ss_pred --------CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 109 --------PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 109 --------~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.+|+|..+|+.++ .+. .|+|++++++||+++++..+++++++++|+|||++++...
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 2689999999886 333 4999999999999988888999999999999999999654
No 42
>PRK06202 hypothetical protein; Provisional
Probab=99.65 E-value=2.3e-15 Score=123.36 Aligned_cols=149 Identities=16% Similarity=0.078 Sum_probs=101.4
Q ss_pred CCCcceEEEEcCCccHHHHHHHHH----cCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCc--ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQK----HCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHV--VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~--~D~v~~~ 131 (244)
.++..+|||+|||+|.++..+++. .|+.+ ++++|+ +.|++.+++. .++++..++.... .+. .|+|+++
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 356689999999999999888764 45668 999999 9999998864 4566665544221 222 4999999
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhh-hh--hccC----ceecCHHHHHH
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVM-TI--YRAK----GKHKTEQEFKQ 204 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~-~~--~~~~----~~~~t~~e~~~ 204 (244)
.++||+++++...+|++++++++ |.+++.|...+.. .+. .. ........ .. ...+ ...++.+|+.+
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~---~~~-~~-~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ 209 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL---AYA-LF-WAGTRLLSRSSFVHTDGLLSVRRSYTPAELAA 209 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH---HHH-HH-HHHHHHhccCceeeccchHHHHhhcCHHHHHH
Confidence 99999999887899999999998 6666666644321 110 00 00000000 00 0000 24568999999
Q ss_pred HHHhCCCCeEEEEEcc
Q 041308 205 LGFSTGFPHLRAFISI 220 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~ 220 (244)
++++ ||++.....+.
T Consensus 210 ll~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 210 LAPQ-GWRVERQWPFR 224 (232)
T ss_pred HhhC-CCeEEecccee
Confidence 9999 99977765543
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=3.4e-15 Score=126.05 Aligned_cols=139 Identities=14% Similarity=0.053 Sum_probs=103.6
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-ceE
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-VDA 127 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~D~ 127 (244)
++..++ ..+..+|||+|||+|.++..+++. +.+ ++++|. +.+++.+++. -++++...|+.+. ++. .|+
T Consensus 112 ~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~-V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~ 187 (287)
T PRK12335 112 VLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFD-VTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDF 187 (287)
T ss_pred HHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccE
Confidence 444443 333469999999999999999986 357 999999 8998877643 3678888888654 443 599
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHH
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGF 207 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~ 207 (244)
|++..++|++++++...+++++.++|+|||+++++.....+....+ .+....++.+|++++++
T Consensus 188 I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~-----------------~p~~~~~~~~el~~~~~ 250 (287)
T PRK12335 188 ILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP-----------------MPFSFTFKEGELKDYYQ 250 (287)
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC-----------------CCCCcccCHHHHHHHhC
Confidence 9999999999988889999999999999999887665432221100 11123467899999995
Q ss_pred hCCCCeEEEE
Q 041308 208 STGFPHLRAF 217 (244)
Q Consensus 208 ~aGf~~~~~~ 217 (244)
+|++++..
T Consensus 251 --~~~i~~~~ 258 (287)
T PRK12335 251 --DWEIVKYN 258 (287)
T ss_pred --CCEEEEEe
Confidence 49998874
No 44
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.64 E-value=3.5e-15 Score=130.35 Aligned_cols=156 Identities=11% Similarity=-0.071 Sum_probs=117.2
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCCCCcceEEE
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKSIHVVDAIF 129 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~~p~~D~v~ 129 (244)
+.+++.++ .+++.+|||||||+|.++..+++.. +.+ ++++|+ +.+++.++++ ..+++..+|+.+.-...|+|+
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~-V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVS-VVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 34666666 7788999999999999999998765 568 999999 9999988764 357888888754322359999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
+..+++|+.+.+...+++++.++|||||++++.+...+...... ..+.+. .. .+++...+.+++.+.++ .
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~--yi--fp~g~lps~~~i~~~~~-~ 303 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINK--YI--FPNGCLPSVRQIAQASE-G 303 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCcee--ee--cCCCcCCCHHHHHHHHH-C
Confidence 99999999887778999999999999999999876554331110 011111 11 35677778888888765 6
Q ss_pred CCCeEEEEEccce
Q 041308 210 GFPHLRAFISIIF 222 (244)
Q Consensus 210 Gf~~~~~~~~~~~ 222 (244)
||.+.++..+..+
T Consensus 304 ~~~v~d~~~~~~h 316 (383)
T PRK11705 304 LFVMEDWHNFGAD 316 (383)
T ss_pred CcEEEEEecChhh
Confidence 8999888776544
No 45
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.63 E-value=1.1e-16 Score=113.68 Aligned_cols=87 Identities=23% Similarity=0.305 Sum_probs=60.5
Q ss_pred EEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C---CeeEEeCCCCCCCC--cceEEEeccccccC
Q 041308 70 VDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P---EVTHIGGDMFKSIH--VVDAIFMKWVLTTW 137 (244)
Q Consensus 70 LDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~---~i~~~~gd~~~~~p--~~D~v~~~~~lh~~ 137 (244)
||||||+|.++..+++.+|..+ ++++|+ +.|++.++++ . ++++...|..+..+ ..|+|++.+++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~-~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDAR-YTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEE-EEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 7999999999999999999999 999999 9999888875 2 34444455444433 35999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCEE
Q 041308 138 TDDECKLIMENYYKALLAGRKL 159 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~l 159 (244)
++ ...+++++++.|+|||+|
T Consensus 80 ~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---HHHHHHHHTTT-TSS-EE
T ss_pred hh--HHHHHHHHHHHcCCCCCC
Confidence 54 458999999999999986
No 46
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.62 E-value=4.1e-15 Score=119.24 Aligned_cols=103 Identities=19% Similarity=0.306 Sum_probs=88.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCCCc--ceEEEeccccccCC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSIHV--VDAIFMKWVLTTWT 138 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~p~--~D~v~~~~~lh~~~ 138 (244)
..+..+|||+|||+|.++..+++..|..+ ++++|+ +.+++.|++. +++++..+|+.++++. .|+|++..++||++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~-v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKH-IYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCC
Confidence 34567999999999999999998888888 999999 9999999874 7788999999886554 49999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 139 DDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
+++..++++++.+++ +++++|.|...+.
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 888889999999987 6788888875443
No 47
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.62 E-value=9.6e-15 Score=119.63 Aligned_cols=137 Identities=20% Similarity=0.128 Sum_probs=105.2
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCC-CCc--ceEEEeccccccCCH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTD 139 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~ 139 (244)
..+|||+|||+|.++..+++.+|..+ ++++|. +.+++.+++. +++.++.+|+.+. ++. .|+|++.+++||..+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAE-FIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCc-EEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 47999999999999999999999988 999999 8888777754 5789999998764 343 499999999999876
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 140 DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
. ..+++++.++|+|||.+++.+...... . . ...... .......+.++|.+++.++ |+...+...
T Consensus 114 ~--~~~l~~~~~~L~~~G~l~~~~~~~~~~---~---~---~~~~~~----~~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 177 (240)
T TIGR02072 114 L--SQALSELARVLKPGGLLAFSTFGPGTL---H---E---LRQSFG----QHGLRYLSLDELKALLKNS-FELLTLEEE 177 (240)
T ss_pred H--HHHHHHHHHHcCCCcEEEEEeCCccCH---H---H---HHHHHH----HhccCCCCHHHHHHHHHHh-cCCcEEEEE
Confidence 5 478999999999999999986533221 0 0 001100 1224456788999999998 987776443
No 48
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.62 E-value=1.2e-15 Score=122.80 Aligned_cols=144 Identities=15% Similarity=0.015 Sum_probs=105.4
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------C----CeeEEeCCCCCCCCcceEEEecc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------P----EVTHIGGDMFKSIHVVDAIFMKW 132 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~----~i~~~~gd~~~~~p~~D~v~~~~ 132 (244)
+.+|||+|||+|.++..|++.. .. ++++|+ +.|++.|++. . ++++.+.|.....+..|+|++.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~-V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQ-VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhC--Ce-eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 3789999999999999999876 44 999999 9999999863 2 46677777655555689999999
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC----ceecCHHHHHHHHHh
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK----GKHKTEQEFKQLGFS 208 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~t~~e~~~ll~~ 208 (244)
+++|+.+++ .+++.+.+.|||||+++|.+....-. .+.. ..+++-..+.....| ....++++...+++.
T Consensus 167 vleHV~dp~--~~l~~l~~~lkP~G~lfittinrt~l---S~~~--~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~ 239 (282)
T KOG1270|consen 167 VLEHVKDPQ--EFLNCLSALLKPNGRLFITTINRTIL---SFAG--TIFLAEIVLRIVPKGTHTWEKFINPEELTSILNA 239 (282)
T ss_pred HHHHHhCHH--HHHHHHHHHhCCCCceEeeehhhhHH---Hhhc--cccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHh
Confidence 999998874 89999999999999999987644322 1111 111111111101122 234588999999999
Q ss_pred CCCCeEEEEEc
Q 041308 209 TGFPHLRAFIS 219 (244)
Q Consensus 209 aGf~~~~~~~~ 219 (244)
+|+++..+...
T Consensus 240 ~~~~v~~v~G~ 250 (282)
T KOG1270|consen 240 NGAQVNDVVGE 250 (282)
T ss_pred cCcchhhhhcc
Confidence 99998876543
No 49
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.61 E-value=1.5e-14 Score=114.60 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=98.4
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-ceE
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV-VDA 127 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~-~D~ 127 (244)
++..++ ..+..+|||+|||+|.++..+++++|+.+ ++++|. +.+++.++++ .+++++.+|....++. .|+
T Consensus 23 ~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~ 100 (187)
T PRK08287 23 ALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQ-VTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADA 100 (187)
T ss_pred HHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCE
Confidence 445555 66778999999999999999999999888 999999 9998888752 5789999988555544 599
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHH
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGF 207 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~ 207 (244)
|++....+++ ..+++++.+.|+|||++++..... .+.+++.++++
T Consensus 101 v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~------------------------------~~~~~~~~~l~ 145 (187)
T PRK08287 101 IFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFILL------------------------------ENLHSALAHLE 145 (187)
T ss_pred EEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEecH------------------------------hhHHHHHHHHH
Confidence 9987665442 367899999999999998854311 11456678899
Q ss_pred hCCCCeEEEEEc
Q 041308 208 STGFPHLRAFIS 219 (244)
Q Consensus 208 ~aGf~~~~~~~~ 219 (244)
++||+.+++...
T Consensus 146 ~~g~~~~~~~~~ 157 (187)
T PRK08287 146 KCGVSELDCVQL 157 (187)
T ss_pred HCCCCcceEEEE
Confidence 999988776444
No 50
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.61 E-value=2.6e-15 Score=117.57 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=101.1
Q ss_pred HHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCC
Q 041308 40 LMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGD 117 (244)
Q Consensus 40 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd 117 (244)
.|.+.-...+++ +.+++...+ .....+|.|+|||+|..+..|++++|... ++++|- +.|++.|+.. ++++|..+|
T Consensus 7 ~Yl~F~~eRtRP-a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~-i~GiDsS~~Mla~Aa~rlp~~~f~~aD 83 (257)
T COG4106 7 QYLQFEDERTRP-ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAV-ITGIDSSPAMLAKAAQRLPDATFEEAD 83 (257)
T ss_pred HHHHHHHhccCc-HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCe-EeeccCCHHHHHHHHHhCCCCceeccc
Confidence 444444455555 345777777 88889999999999999999999999999 999999 9999999765 999999999
Q ss_pred CCCCCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 118 MFKSIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 118 ~~~~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+.+-.|+ .|+++.+-+||.++|. .++|.++...|.|||.+.+.=
T Consensus 84 l~~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 84 LRTWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred HhhcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEEC
Confidence 9765554 5999999999999887 589999999999999999853
No 51
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.61 E-value=1.2e-14 Score=114.65 Aligned_cols=177 Identities=14% Similarity=0.087 Sum_probs=124.7
Q ss_pred cccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC----C--CCCe-eEEeCCC
Q 041308 47 RVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP----S--IPEV-THIGGDM 118 (244)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~----~--~~~i-~~~~gd~ 118 (244)
+-..++.+.|.+.++ +...+|||||+|||.-+.++++.+|+++ -.--|. +......+ + .+++ .-+..|.
T Consensus 9 RNk~pIl~vL~~~l~--~~~~~vLEiaSGtGqHa~~FA~~lP~l~-WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 9 RNKDPILEVLKQYLP--DSGTRVLEIASGTGQHAVYFAQALPHLT-WQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred hCHhHHHHHHHHHhC--ccCceEEEEcCCccHHHHHHHHHCCCCE-EcCCCCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence 334455555555544 2223699999999999999999999987 433354 32221111 1 1222 1122344
Q ss_pred CCC---CC--------cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhh
Q 041308 119 FKS---IH--------VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVM 187 (244)
Q Consensus 119 ~~~---~p--------~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~ 187 (244)
.++ .+ ..|+|++.+++|-.+-+.+..+|+.+.++|+|||.|++.-++..+..-.+. -...+|.+..
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr 162 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLR 162 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHh
Confidence 433 22 139999999999999999999999999999999999999888765522111 1245666655
Q ss_pred hhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 188 TIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 188 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
. ..+....|+.+++.++.+++|++..+...++.+..+++.+|
T Consensus 163 ~-rdp~~GiRD~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 163 S-RDPEWGIRDIEDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred c-CCCCcCccCHHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 5 45567888999999999999999999999999888877665
No 52
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.59 E-value=3.3e-14 Score=116.08 Aligned_cols=150 Identities=14% Similarity=0.112 Sum_probs=102.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCcceEEEecccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHVVDAIFMKWVL 134 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~~D~v~~~~~l 134 (244)
..+..+|||+|||+|.++..+++.. .+ ++++|+ +.+++.+++. .++++..+|+.......|+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~-v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AK-VVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchh
Confidence 3456899999999999999999865 45 999999 9999888753 37899999942222335999999999
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeE
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHL 214 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 214 (244)
||+++++...+++++.+.+++++ ++.... .. +........................+..+|.++++++||++.
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~-~i~~~~---~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 210 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSL-IFTFAP---YT---PLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVV 210 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeE-EEEECC---cc---HHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceE
Confidence 99998888899999998775444 333221 11 111000000000000000122345678999999999999999
Q ss_pred EEEEccce
Q 041308 215 RAFISIIF 222 (244)
Q Consensus 215 ~~~~~~~~ 222 (244)
+......+
T Consensus 211 ~~~~~~~~ 218 (230)
T PRK07580 211 RTERISSG 218 (230)
T ss_pred eeeeccch
Confidence 98776533
No 53
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.58 E-value=2.7e-15 Score=106.98 Aligned_cols=88 Identities=19% Similarity=0.305 Sum_probs=73.1
Q ss_pred EEEEcCCccHHHHHHHHHc---CCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CC--cceEEEec-cccc
Q 041308 69 LVDVGGSAGDCLRIILQKH---CFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IH--VVDAIFMK-WVLT 135 (244)
Q Consensus 69 vLDvG~G~G~~~~~l~~~~---p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p--~~D~v~~~-~~lh 135 (244)
|||+|||+|..+..+.+.+ |..+ ++++|+ +.|++.+++. .+++++++|+.+- .. ..|+|++. .++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~-~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSR-VIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SE-EEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccce-EEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999999999999999986 4567 999999 9999988863 5889999999663 22 25999995 5599
Q ss_pred cCCHHHHHHHHHHHHHHcCCCC
Q 041308 136 TWTDDECKLIMENYYKALLAGR 157 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG 157 (244)
|+++++..++++++.+.|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999997
No 54
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.58 E-value=7.4e-14 Score=118.61 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=79.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-----C--CeeEEeCCCCCC--CCc-----c-e
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-----P--EVTHIGGDMFKS--IHV-----V-D 126 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-----~--~i~~~~gd~~~~--~p~-----~-D 126 (244)
++..+|||+|||||..++.+++..+ ..+ ++++|+ +.|++.++++ + ++.++.+|+.+. ++. . .
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~-~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPAR-YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCe-EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 3457899999999999999999987 577 999999 9998877643 3 466789999764 322 1 3
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
++++...+++++++++..+|++++++|+|||.+++
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 45566889999999999999999999999999987
No 55
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.57 E-value=5.6e-15 Score=118.19 Aligned_cols=145 Identities=12% Similarity=-0.005 Sum_probs=103.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCC-----eeEEeCCCCCCC---CcceEEEeccccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPE-----VTHIGGDMFKSI---HVVDAIFMKWVLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~-----i~~~~gd~~~~~---p~~D~v~~~~~lh 135 (244)
...+|||||||.|.++..+++.+ .+ |+++|+ +.+|+.|+.... +++.+....+.. ...|+|++..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~-VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--AS-VTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--Ce-eEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 46899999999999999999987 56 999999 999999996522 234443332221 1359999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC-----ceecCHHHHHHHHHhCC
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-----GKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~t~~e~~~ll~~aG 210 (244)
|+++++ .++++|.+.+||||.+++........ ++.......-.+..+ .+. .+...++|+..++.++|
T Consensus 136 Hv~dp~--~~~~~c~~lvkP~G~lf~STinrt~k---a~~~~i~~ae~vl~~---vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 136 HVPDPE--SFLRACAKLVKPGGILFLSTINRTLK---AYLLAIIGAEYVLRI---VPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred ccCCHH--HHHHHHHHHcCCCcEEEEeccccCHH---HHHHHHHHHHHHHHh---cCCcchhHHHhcCHHHHHHhcccCC
Confidence 999985 69999999999999999987754332 111110011111112 222 23346889999999999
Q ss_pred CCeEEEEEcc
Q 041308 211 FPHLRAFISI 220 (244)
Q Consensus 211 f~~~~~~~~~ 220 (244)
+++....-+.
T Consensus 208 ~~~~~~~g~~ 217 (243)
T COG2227 208 LKIIDRKGLT 217 (243)
T ss_pred ceEEeecceE
Confidence 9988875543
No 56
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.55 E-value=2.2e-14 Score=114.25 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=108.8
Q ss_pred ceEEEEcCCccHHHHHHHHHcCC--CCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-C----Ccc--eEEEec
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCF--ICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-I----HVV--DAIFMK 131 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~----p~~--D~v~~~ 131 (244)
.+||+||||.|...-.+++..|+ ++ +.++|- |..++..++. .++..-.-|+..+ + +.+ |.+++.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~-v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLK-VYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeE-EEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 38999999999999999999887 88 999999 9998888764 4555555566544 2 223 999999
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCc--eecCHHHHHHHHHhC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG--KHKTEQEFKQLGFST 209 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~t~~e~~~ll~~a 209 (244)
++|-.++++.....+++++++|||||.+++.|....+.... .... .+.++-+... ..+|. -.++.++++++|.+|
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaql-RF~~-~~~i~~nfYV-RgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQL-RFKK-GQCISENFYV-RGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHH-hccC-CceeecceEE-ccCCceeeeccHHHHHHHHHhc
Confidence 99999999999999999999999999999999876654210 0000 1112211111 12333 235899999999999
Q ss_pred CCCeEEE
Q 041308 210 GFPHLRA 216 (244)
Q Consensus 210 Gf~~~~~ 216 (244)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9998875
No 57
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.55 E-value=1.7e-14 Score=114.29 Aligned_cols=137 Identities=17% Similarity=0.193 Sum_probs=100.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CC-eeEEeCCCCCCCCc---ceEEEecccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PE-VTHIGGDMFKSIHV---VDAIFMKWVL 134 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~-i~~~~gd~~~~~p~---~D~v~~~~~l 134 (244)
+..+.||+|+|.|..+..++..+ .+++..+|. +..++.|++. .+ .++.+.-+.+-.|+ .|+|++.|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 46899999999999999887544 344888898 9999988842 33 34444434222343 4999999999
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeE
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHL 214 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 214 (244)
.|++|++...+|++|.++|+|+|.+++-|.+..... ..+|- ..++..|+.+.++++|++||++++
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~------~DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE------EDSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET------TTTEEEEEHHHHHHHHHHCT-EEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC------ccCeeecCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999998765431 13332 567888999999999999999999
Q ss_pred EEEE
Q 041308 215 RAFI 218 (244)
Q Consensus 215 ~~~~ 218 (244)
+.+.
T Consensus 198 ~~~~ 201 (218)
T PF05891_consen 198 KEEK 201 (218)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 8654
No 58
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.55 E-value=1.2e-13 Score=108.61 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=99.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCC-cceEEEecccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIH-VVDAIFMKWVLTT 136 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p-~~D~v~~~~~lh~ 136 (244)
.+..+|||+|||+|.++..+++..+ + ++++|+ +.+++.++++ .+++++.+|..+..+ ..|+|+++..+|+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--C-ILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--E-EEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCC
Confidence 3457899999999999999998876 6 999999 9999888763 457888999877543 3599999988887
Q ss_pred CCHHH-------------------HHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceec
Q 041308 137 WTDDE-------------------CKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHK 197 (244)
Q Consensus 137 ~~~~~-------------------~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 197 (244)
.+++. ...+++++.+.|+|||++++++....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------------------ 144 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------------------ 144 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------------------------------
Confidence 75421 35689999999999999999764211
Q ss_pred CHHHHHHHHHhCCCCeEEEEEccce
Q 041308 198 TEQEFKQLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 198 t~~e~~~ll~~aGf~~~~~~~~~~~ 222 (244)
...++.++++++||+...+.....+
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecC
Confidence 1456788899999998888765543
No 59
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.53 E-value=2.9e-13 Score=109.14 Aligned_cols=133 Identities=11% Similarity=0.021 Sum_probs=100.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------------------CCCeeEEeCCCCCCC-
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------------------IPEVTHIGGDMFKSI- 122 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------------------~~~i~~~~gd~~~~~- 122 (244)
..+..+|||+|||.|..+..|+++. .+ ++++|+ +..++.+.+ ..++++..+|+++..
T Consensus 32 ~~~~~rvLd~GCG~G~da~~LA~~G--~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 32 LPAGARVFVPLCGKSLDLAWLAEQG--HR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCCeEEEeCCCchhHHHHHHhCC--Ce-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 3456799999999999999999864 45 999999 888876411 246899999998753
Q ss_pred ---CcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC-CchHHhhhhhcccHhhhhhhccCceecC
Q 041308 123 ---HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS-NESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 123 ---p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
+..|.|+-+.++||++++.....++++.++|||||++++.....++.. ..+ ....+
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gp--------------------p~~~~ 168 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGP--------------------PFSVS 168 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCc--------------------CCCCC
Confidence 224999999999999999999999999999999998777655332211 000 12357
Q ss_pred HHHHHHHHHhCCCCeEEEEEc
Q 041308 199 EQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~~ 219 (244)
.++++++|.. +|.+..+...
T Consensus 169 ~~eL~~~f~~-~~~i~~~~~~ 188 (213)
T TIGR03840 169 PAEVEALYGG-HYEIELLESR 188 (213)
T ss_pred HHHHHHHhcC-CceEEEEeec
Confidence 8899999853 5776666543
No 60
>PTZ00146 fibrillarin; Provisional
Probab=99.52 E-value=9.6e-13 Score=109.58 Aligned_cols=141 Identities=15% Similarity=0.061 Sum_probs=97.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hH----HHHhCCCCCCeeEEeCCCCCCC------CcceEEEe
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PE----VVAKAPSIPEVTHIGGDMFKSI------HVVDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~----~i~~a~~~~~i~~~~gd~~~~~------p~~D~v~~ 130 (244)
+++..+|||+|||+|.++..+++... .-+ ++++|. +. +++.+++..+|.++.+|+..+. +..|+|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~-VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGV-VYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 67889999999999999999999863 457 999998 64 6677766689999999986541 22499987
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCC
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aG 210 (244)
... ..++...++.++.+.|||||+|+|.-.-..-+...+. ...+ .+|. ++|+++|
T Consensus 209 Dva----~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~p-------------------e~~f-~~ev-~~L~~~G 263 (293)
T PTZ00146 209 DVA----QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKP-------------------EVVF-ASEV-QKLKKEG 263 (293)
T ss_pred eCC----CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCH-------------------HHHH-HHHH-HHHHHcC
Confidence 763 1334556778999999999999993111110100000 0011 2445 8889999
Q ss_pred CCeEEEEEcc---ceeEEEeec
Q 041308 211 FPHLRAFISI---IFTLFLSSK 229 (244)
Q Consensus 211 f~~~~~~~~~---~~~~~~~~~ 229 (244)
|+.++..++. -.+.++++.
T Consensus 264 F~~~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 264 LKPKEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred CceEEEEecCCccCCcEEEEEE
Confidence 9988887764 244455543
No 61
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.52 E-value=1.7e-13 Score=116.42 Aligned_cols=141 Identities=14% Similarity=0.071 Sum_probs=93.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCCCCcceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKSIHVVDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~~p~~D~v~~~~ 132 (244)
++.+|||+|||+|.++..+++. +.+ ++++|+ +.|++.++++ .+++|..+|+.+.-...|+|++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~-V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAI-VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 3579999999999999999986 356 999999 9999888753 246788888743322359999999
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc--cCceecCHHHHHHHHHhCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR--AKGKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~t~~e~~~ll~~aG 210 (244)
++||++++....+++++.+ +.+||.++... +.. ............ ... .. ......+.++++++++++|
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~---p~~---~~~~~l~~~g~~-~~g-~~~~~r~y~~s~eel~~lL~~AG 291 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAEKRLIISFA---PKT---LYYDILKRIGEL-FPG-PSKATRAYLHAEADVERALKKAG 291 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcCCEEEEEeC---Ccc---hHHHHHHHHHhh-cCC-CCcCceeeeCCHHHHHHHHHHCC
Confidence 9999998877778888875 45555544221 111 111000000000 000 00 0112347999999999999
Q ss_pred CCeEEEE
Q 041308 211 FPHLRAF 217 (244)
Q Consensus 211 f~~~~~~ 217 (244)
|++....
T Consensus 292 f~v~~~~ 298 (315)
T PLN02585 292 WKVARRE 298 (315)
T ss_pred CEEEEEE
Confidence 9987654
No 62
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.51 E-value=4.8e-13 Score=105.66 Aligned_cols=129 Identities=18% Similarity=0.074 Sum_probs=96.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC-cceEEEecccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH-VVDAIFMKWVL 134 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p-~~D~v~~~~~l 134 (244)
+++.+|||+|||+|..+..+++..|..+ ++++|. +.+++.++++ ++++++.+|+.+. .. ..|+|++...
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~-V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELK-VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-
Confidence 3468999999999999999999889889 999999 9999888753 4699999998664 22 2599998753
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeE
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHL 214 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 214 (244)
. ....+++++++.|||||++++.+.. . ...++.++.+..|+.+.
T Consensus 122 ---~--~~~~~l~~~~~~LkpGG~lv~~~~~---~----------------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 ---A--SLSDLVELCLPLLKPGGRFLALKGR---D----------------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred ---c--CHHHHHHHHHHhcCCCeEEEEEeCC---C----------------------------hHHHHHHHHHhcCceEe
Confidence 2 2357899999999999999987531 1 13345666777799877
Q ss_pred EEEEc-----cceeEEEeecC
Q 041308 215 RAFIS-----IIFTLFLSSKS 230 (244)
Q Consensus 215 ~~~~~-----~~~~~~~~~~~ 230 (244)
++... .++..+++-+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 166 EVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred eeEEEecCCCCCcEEEEEEec
Confidence 65443 34555555544
No 63
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.50 E-value=1.6e-13 Score=118.95 Aligned_cols=108 Identities=14% Similarity=0.089 Sum_probs=89.2
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------CCeeEEeCCCCCCCC
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------PEVTHIGGDMFKSIH 123 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------~~i~~~~gd~~~~~p 123 (244)
+-+++.++ .....+|||+|||+|.++..+++++|..+ ++++|. +.+++.++++ .++++..+|.++.++
T Consensus 218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~-V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 33666666 34446999999999999999999999999 999999 8999888753 368999999987754
Q ss_pred c--ceEEEecccccc---CCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 124 V--VDAIFMKWVLTT---WTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 124 ~--~D~v~~~~~lh~---~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
. .|+|+++-.+|. ++++...++++++++.|+|||.++++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 599999866654 456667789999999999999999984
No 64
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.50 E-value=1e-13 Score=109.08 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=97.2
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-----CCCeeEEeCCCCCC-CCc-ceE
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-----IPEVTHIGGDMFKS-IHV-VDA 127 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-----~~~i~~~~gd~~~~-~p~-~D~ 127 (244)
+++..+ .-++.++||+|||.|..+..|++++ .. |+++|. +..++.+++ .-.|+....|+.+. ++. .|+
T Consensus 22 v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G--~~-VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 22 VLEAVP-LLKPGKALDLGCGEGRNALYLASQG--FD-VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT---E-EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCC--Ce-EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 555555 4456899999999999999999986 45 999999 777766553 23588888998665 554 499
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHH
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGF 207 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~ 207 (244)
|++..++++++.+....+++++.+.++|||++++......++...+ .+..-.+.+.|+++.+
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~-----------------~~~~f~~~~~EL~~~y- 159 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP-----------------SPFPFLLKPGELREYY- 159 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S-----------------S--S--B-TTHHHHHT-
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC-----------------CCCCcccCHHHHHHHh-
Confidence 9999999999999999999999999999999998655432221100 0112224567899998
Q ss_pred hCCCCeEEEEE
Q 041308 208 STGFPHLRAFI 218 (244)
Q Consensus 208 ~aGf~~~~~~~ 218 (244)
+||++++...
T Consensus 160 -~dW~il~y~E 169 (192)
T PF03848_consen 160 -ADWEILKYNE 169 (192)
T ss_dssp -TTSEEEEEEE
T ss_pred -CCCeEEEEEc
Confidence 5799888644
No 65
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.49 E-value=2.6e-13 Score=111.15 Aligned_cols=148 Identities=13% Similarity=-0.060 Sum_probs=99.9
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCC--C-c-ceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSI--H-V-VDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~--p-~-~D~v~~~~~ 133 (244)
.+..+|||+|||+|.++..+.+.. .+ ++++|. +.+++.++++ .++++...|+.+.. + . .|+|++.++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~--~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG--AD-VTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC--Ce-EEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 456899999999999999888753 56 999999 8888877642 35677777764432 2 2 499999999
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhh-ccCceecCHHHHHHHHHhCCCC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIY-RAKGKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~t~~e~~~ll~~aGf~ 212 (244)
++|.++. ..+++++.+.|+|||++++........ ...........-....... .......+.++|.++++++||+
T Consensus 124 l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 124 LEHVPDP--ASFVRACAKLVKPGGLVFFSTLNRNLK--SYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hhccCCH--HHHHHHHHHHcCCCcEEEEEecCCChH--HHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 9998875 478999999999999999876421110 0000000000000000000 0113445889999999999999
Q ss_pred eEEEEE
Q 041308 213 HLRAFI 218 (244)
Q Consensus 213 ~~~~~~ 218 (244)
+++...
T Consensus 200 ~v~~~~ 205 (233)
T PRK05134 200 VQDITG 205 (233)
T ss_pred Eeeeee
Confidence 998754
No 66
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.47 E-value=7.8e-13 Score=104.11 Aligned_cols=91 Identities=19% Similarity=0.151 Sum_probs=73.9
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC--cceEEEecccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH--VVDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p--~~D~v~~~~~lh~ 136 (244)
+.+|||+|||+|..+..++...|..+ ++++|. +.+++.++++ ++++++.+|+.+..+ ..|+|++.. +|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~-V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELK-LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 58999999999999999998888888 999999 8888776542 579999999966422 359998876 443
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+ ..+++.+++.|+|||++++..
T Consensus 121 ~-----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 121 L-----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred H-----HHHHHHHHHhcCCCCEEEEEc
Confidence 2 357788899999999999864
No 67
>PLN03075 nicotianamine synthase; Provisional
Probab=99.47 E-value=2.7e-13 Score=113.23 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=80.5
Q ss_pred CCcceEEEEcCCccHH-HHHHH-HHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCCC---cceEEE
Q 041308 64 KGVKRLVDVGGSAGDC-LRIIL-QKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSIH---VVDAIF 129 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~-~~~l~-~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~p---~~D~v~ 129 (244)
.++.+|+|||||.|.+ +.-++ +.+|+.+ ++++|. +.+++.|++. .+++|..+|..+..+ ..|+|+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~-~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTS-FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence 3679999999998754 33333 4578888 999999 9999888752 579999999987532 359999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+. ++|++..++..++++++++.|+|||.+++--
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99 9999976667899999999999999999844
No 68
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.46 E-value=3.7e-13 Score=109.47 Aligned_cols=147 Identities=14% Similarity=-0.033 Sum_probs=101.4
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----C-CeeEEeCCCCCCC---Cc-ceEEEeccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----P-EVTHIGGDMFKSI---HV-VDAIFMKWV 133 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~-~i~~~~gd~~~~~---p~-~D~v~~~~~ 133 (244)
...+|||+|||+|.++..+++.. .+ ++++|. +.+++.++++ . ++++..+|+.+.. +. .|+|++.++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--AN-VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--Ce-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 35799999999999999988764 45 899999 8888877652 2 5888888875431 12 499999999
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh-hcccHhhh-hhhccCceecCHHHHHHHHHhCCC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL-LEGDIFVM-TIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~-~~~d~~~~-~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
+||..+.+ .+++++.+.|+|||.+++.....+.. ....... ..+..... ..........+..++.++++++||
T Consensus 122 l~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~ 196 (224)
T TIGR01983 122 LEHVPDPQ--AFIRACAQLLKPGGILFFSTINRTPK---SYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGL 196 (224)
T ss_pred HHhCCCHH--HHHHHHHHhcCCCcEEEEEecCCCch---HHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCC
Confidence 99988764 78999999999999999876532211 1110000 00000000 000011234578899999999999
Q ss_pred CeEEEEEc
Q 041308 212 PHLRAFIS 219 (244)
Q Consensus 212 ~~~~~~~~ 219 (244)
+++++...
T Consensus 197 ~i~~~~~~ 204 (224)
T TIGR01983 197 RVKDVKGL 204 (224)
T ss_pred eeeeeeeE
Confidence 99988654
No 69
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.46 E-value=3.6e-13 Score=99.05 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=79.7
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CC-c
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IH-V 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p-~ 124 (244)
+++.+. ..+..+|||+|||+|.++..++++.|+.+ ++++|. +.+++.++++ .+++++.+|.... .+ .
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 455555 55667999999999999999999998888 999999 8888887642 5789988887642 22 3
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|+|++....++ ..++++++++.|+|||++++.
T Consensus 89 ~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEE
Confidence 599998765432 348899999999999999874
No 70
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.46 E-value=2.1e-12 Score=104.54 Aligned_cols=133 Identities=14% Similarity=0.073 Sum_probs=99.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------------------CCCeeEEeCCCCCCC-
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------------------IPEVTHIGGDMFKSI- 122 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------------------~~~i~~~~gd~~~~~- 122 (244)
..+..+|||+|||.|..+..|+++. .+ |+++|+ +..++.+.. ..+|++..+|+++..
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G--~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQG--HE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCC--Ce-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 3456799999999999999999864 56 999999 887775421 156899999998763
Q ss_pred ---CcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC-CchHHhhhhhcccHhhhhhhccCceecC
Q 041308 123 ---HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS-NESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 123 ---p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
+..|+|+-+.++||++++...+.++++.++|+|||+++++....++.. ..| ....+
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gP--------------------p~~~~ 171 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGP--------------------PFSVS 171 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCC--------------------CCCCC
Confidence 234999999999999999999999999999999997665444333221 111 11357
Q ss_pred HHHHHHHHHhCCCCeEEEEEc
Q 041308 199 EQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~~ 219 (244)
.+++++++.+ +|.+..+...
T Consensus 172 ~~el~~~~~~-~~~i~~~~~~ 191 (218)
T PRK13255 172 DEEVEALYAG-CFEIELLERQ 191 (218)
T ss_pred HHHHHHHhcC-CceEEEeeec
Confidence 8999999853 3777666543
No 71
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.45 E-value=6.7e-13 Score=114.25 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=87.1
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc-ceE
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV-VDA 127 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~-~D~ 127 (244)
.+++.++ .....+|||+|||+|.++..+++++|..+ ++++|+ +.+++.++++ -..+++.+|.++..+. .|+
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~-v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIR-LTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 3555555 33346899999999999999999999999 999999 8999988753 2456788888776544 599
Q ss_pred EEeccccccC---CHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVLTTW---TDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~lh~~---~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+++..+|.. ..+....+++++.+.|||||.++|+-.
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 9999988863 344567899999999999999998754
No 72
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.44 E-value=1.1e-12 Score=104.58 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=96.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC---CCc--ceEEEeccccccC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS---IHV--VDAIFMKWVLTTW 137 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~---~p~--~D~v~~~~~lh~~ 137 (244)
++..+|||+|||+|.++..+++. ...+ ++++|+ +.+++.+++ .+++++.+|+.+. ++. .|+|++.+++||+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~-~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVR-GYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCc-EEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 35579999999999999988765 3567 899999 889888765 4678888888653 333 4999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhc----cc------HhhhhhhccCceecCHHHHHHHHH
Q 041308 138 TDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLE----GD------IFVMTIYRAKGKHKTEQEFKQLGF 207 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~----~d------~~~~~~~~~~~~~~t~~e~~~ll~ 207 (244)
++. ..+++++.+++++ +++.-+ .. ..+....... +. ..... .+.....+.+++.++++
T Consensus 89 ~d~--~~~l~e~~r~~~~---~ii~~p---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~ll~ 156 (194)
T TIGR02081 89 RNP--EEILDEMLRVGRH---AIVSFP---NF--GYWRVRWSILTKGRMPVTGELPYDWYN--TPNIHFCTIADFEDLCG 156 (194)
T ss_pred cCH--HHHHHHHHHhCCe---EEEEcC---Ch--hHHHHHHHHHhCCccccCCCCCccccC--CCCcccCcHHHHHHHHH
Confidence 875 4788988877654 333211 11 0010000000 00 00000 12234678999999999
Q ss_pred hCCCCeEEEEEccc
Q 041308 208 STGFPHLRAFISII 221 (244)
Q Consensus 208 ~aGf~~~~~~~~~~ 221 (244)
++||++++.....+
T Consensus 157 ~~Gf~v~~~~~~~~ 170 (194)
T TIGR02081 157 ELNLRILDRAAFDV 170 (194)
T ss_pred HCCCEEEEEEEecc
Confidence 99999999877643
No 73
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.43 E-value=2.4e-12 Score=106.45 Aligned_cols=123 Identities=19% Similarity=0.188 Sum_probs=94.2
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceEEEeccccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDAIFMKWVLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~v~~~~~lh 135 (244)
...+|||+|||+|.++..+++..|+.+ ++++|. +.+++.++++ ++++++.+|+++.++. .|+|+++...+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDAR-VTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCC
Confidence 346999999999999999999999888 999999 9999888753 4699999999887644 49999854332
Q ss_pred ------cCCHHH------------------HHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc
Q 041308 136 ------TWTDDE------------------CKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 191 (244)
Q Consensus 136 ------~~~~~~------------------~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 191 (244)
.+..+. ...+++++.+.|+|||++++... .
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~----~---------------------- 219 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG----Y---------------------- 219 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----c----------------------
Confidence 222211 23689999999999999987321 0
Q ss_pred cCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 192 AKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 192 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
...+++.++++++||+.+++..-
T Consensus 220 -----~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 220 -----DQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred -----cHHHHHHHHHHhCCCCceEEEeC
Confidence 11467889999999998776543
No 74
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.43 E-value=1.7e-12 Score=107.53 Aligned_cols=151 Identities=19% Similarity=0.146 Sum_probs=101.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------C-CCeeEEeCCCCCCCCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------I-PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------~-~~i~~~~gd~~~~~p~- 124 (244)
+.+...++.++ +.+|||||||.|.++-.++.+.+. . ++++|. +...-..+. . .++.+.. ...+.+|.
T Consensus 105 ~rl~p~l~~L~-gk~VLDIGC~nGY~~frM~~~GA~-~-ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~~ 180 (315)
T PF08003_consen 105 DRLLPHLPDLK-GKRVLDIGCNNGYYSFRMLGRGAK-S-VIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPNL 180 (315)
T ss_pred HHHHhhhCCcC-CCEEEEecCCCcHHHHHHhhcCCC-E-EEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhcccc
Confidence 34555553244 489999999999999999998764 4 899996 433222211 1 2333332 23344443
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchH--HhhhhhcccHhhhhhhccC-ceecCH
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQ--RTRALLEGDIFVMTIYRAK-GKHKTE 199 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~-~~~~t~ 199 (244)
.|+|++--||+|..++ ...|+++++.|+|||.+++=..+++.+..... ..+++. +.+ --..|.
T Consensus 181 ~~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~----------m~nv~FiPs~ 248 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAK----------MRNVWFIPSV 248 (315)
T ss_pred CCcCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccC----------CCceEEeCCH
Confidence 4999999999998887 58899999999999999986666655432110 011100 111 123489
Q ss_pred HHHHHHHHhCCCCeEEEEEcc
Q 041308 200 QEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~~~~~~ 220 (244)
..+..|++++||+.+++.+..
T Consensus 249 ~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 249 AALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred HHHHHHHHHcCCceEEEecCc
Confidence 999999999999999987764
No 75
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=3.5e-12 Score=106.95 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=99.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceEEEeccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~v~~~~~ 133 (244)
..+..+|||+|||+|.++..+++..|..+ ++++|+ +.+++.++++ .+++++.+|++++++. .|+|+++.-
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~-v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAE-VTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCC
Confidence 34567999999999999999999999888 999999 8888887753 5799999999887552 599988532
Q ss_pred c------ccCCH------------------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhh
Q 041308 134 L------TTWTD------------------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTI 189 (244)
Q Consensus 134 l------h~~~~------------------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~ 189 (244)
. +.+.+ +...++++++.+.|+|||++++. . . .
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e-~----g---~---------------- 240 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE-I----G---Y---------------- 240 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE-E----C---c----------------
Confidence 2 11111 12357889999999999999972 1 0 0
Q ss_pred hccCceecCHHHHHHHHHhCCCCeEEE-EEccceeEEEeec
Q 041308 190 YRAKGKHKTEQEFKQLGFSTGFPHLRA-FISIIFTLFLSSK 229 (244)
Q Consensus 190 ~~~~~~~~t~~e~~~ll~~aGf~~~~~-~~~~~~~~~~~~~ 229 (244)
...+++.+++++.||..+++ .+..+...++.++
T Consensus 241 -------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 01456888999999986665 4455555666553
No 76
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.42 E-value=3.1e-13 Score=105.40 Aligned_cols=135 Identities=18% Similarity=0.189 Sum_probs=98.0
Q ss_pred cCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCCCCc--ceEEEec
Q 041308 59 GYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKSIHV--VDAIFMK 131 (244)
Q Consensus 59 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~~p~--~D~v~~~ 131 (244)
.++ -....++||+|||.|.++..|+.+.- + ++++|. +..++.|+++ ++|++..+|+-+..|. +|+|+++
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~-LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--R-LLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--E-EEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--c-eEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 344 45668999999999999999997763 4 899999 9999988753 8899999999777666 4999999
Q ss_pred cccccCCH-HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCC
Q 041308 132 WVLTTWTD-DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 132 ~~lh~~~~-~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aG 210 (244)
-++|++++ ++...+++++.+.|+|||.+++.+... ... ..-|.....+.+.++|++.
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-----------------~~c----~~wgh~~ga~tv~~~~~~~- 171 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD-----------------ANC----RRWGHAAGAETVLEMLQEH- 171 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-----------------HHH----HHTT-S--HHHHHHHHHHH-
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-----------------Ccc----cccCcccchHHHHHHHHHH-
Confidence 99999986 677889999999999999999977521 011 1124445678888998876
Q ss_pred CCeEEEEEc
Q 041308 211 FPHLRAFIS 219 (244)
Q Consensus 211 f~~~~~~~~ 219 (244)
|..++...+
T Consensus 172 ~~~~~~~~~ 180 (201)
T PF05401_consen 172 LTEVERVEC 180 (201)
T ss_dssp SEEEEEEEE
T ss_pred hhheeEEEE
Confidence 666665444
No 77
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.41 E-value=1e-12 Score=102.58 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=81.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceEEEeccccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDAIFMKWVLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~v~~~~~lh 135 (244)
...++||+|||+|.++..+++..|+.+ ++++|+ +.+++.++++ ++++++..|.++.++. .|+|+++--+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 468999999999999999999999989 999999 9999888763 3489999999998663 59999998877
Q ss_pred cCCH---HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 136 TWTD---DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~~~~---~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.-.+ +-..++++++.+.|+|||+++++-.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 6554 3457899999999999999977543
No 78
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.39 E-value=5.1e-12 Score=101.77 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=78.4
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeechHHHHhCCCCCCeeEEeCCCCCC---------CCc
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS---------IHV 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~---------~p~ 124 (244)
++.+.+..+++..+|||+|||||.++..+++..+ ..+ ++++|+..| ...++++++.+|+.+. ++.
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~-V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGR-VIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCce-EEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3445555356778999999999999999999864 567 999999443 2336799999999873 223
Q ss_pred --ceEEEeccccccCCHHH---------HHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 --VDAIFMKWVLTTWTDDE---------CKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~---------~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++....+....+. ...+|++++++|+|||.+++..+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 49999876655443211 24689999999999999999754
No 79
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.37 E-value=1.9e-12 Score=99.99 Aligned_cols=126 Identities=18% Similarity=0.204 Sum_probs=85.6
Q ss_pred EEeec-hHHHHhCCCC---------CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 94 INFDL-PEVVAKAPSI---------PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 94 ~~~D~-~~~i~~a~~~---------~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
+++|. ++|++.|+++ .+++++.+|+.+. ++. .|+|++..++|++++. .++|++++|+|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEE
Confidence 47899 9999988532 3689999999663 444 4999999999999865 588999999999999999
Q ss_pred EecccCCCCCCchHHhhhhhcccHh----hhh------hhc--cCceecCHHHHHHHHHhCCCCeEEEEEccce
Q 041308 161 ACEPVLPDDSNESQRTRALLEGDIF----VMT------IYR--AKGKHKTEQEFKQLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 161 i~d~~~~~~~~~~~~~~~~~~~d~~----~~~------~~~--~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 222 (244)
+.|...++..-......+ ...... ... .+. .-....+.+++.++++++||+.++......+
T Consensus 79 i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGW-MIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred EEECCCCChHHHHHHHHH-HccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 999875543111000000 000000 000 000 0023358899999999999999988776554
No 80
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.37 E-value=1.4e-12 Score=104.58 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=76.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC----CCc--ceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS----IHV--VDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~----~p~--~D~v~~~ 131 (244)
+..+|||+|||+|..+..+++..|+.+ ++++|. +.+++.++++ ++++++.+|+.+. ++. .|+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~-v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDIN-FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCcc-EEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 468999999999999999999999888 999999 9999888742 6799999998322 333 4999876
Q ss_pred cccccC------CHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 132 WVLTTW------TDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 132 ~~lh~~------~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+..... .......++++++++|||||.+++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 543211 11113578999999999999999864
No 81
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.37 E-value=1.3e-11 Score=102.23 Aligned_cols=122 Identities=17% Similarity=0.136 Sum_probs=87.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCcceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHVVDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~~D~v~~~~~lh 135 (244)
.+..+|||+|||+|.++..+.+..+ .+ ++++|+ +.+++.++++ .++.+..+|. ..|+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~-v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KK-VLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-Ce-EEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH-
Confidence 4568999999999999998776654 36 999999 9999988764 2333333322 35999875432
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
+....+++++.++|||||++++...... ..+++.+.+++.||++.+
T Consensus 190 ----~~~~~l~~~~~~~LkpgG~lilsgi~~~------------------------------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 ----NPLLELAPDLARLLKPGGRLILSGILEE------------------------------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ----HHHHHHHHHHHHhcCCCcEEEEEECcHh------------------------------hHHHHHHHHHHCCCEEEE
Confidence 3345789999999999999998654210 145678889999999998
Q ss_pred EEEccceeEEEe
Q 041308 216 AFISIIFTLFLS 227 (244)
Q Consensus 216 ~~~~~~~~~~~~ 227 (244)
......-..++.
T Consensus 236 ~~~~~~W~~~~~ 247 (250)
T PRK00517 236 VLERGEWVALVG 247 (250)
T ss_pred EEEeCCEEEEEE
Confidence 876554444433
No 82
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.37 E-value=3.5e-12 Score=102.53 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=79.2
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
..+++.++ .++..+|||+|||+|..+..+++..+ ..+ ++++|. +.+++.++++ .+++++.+|..+.++.
T Consensus 62 ~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~-V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 62 AMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGK-VYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 34556665 66778999999999999999998764 456 999999 9998877753 3589999999876443
Q ss_pred ---ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 ---VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 ---~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++...+++++ +++.+.|+|||++++.-
T Consensus 140 ~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 140 HAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 49999998887655 35678899999998843
No 83
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.34 E-value=2.8e-12 Score=102.21 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=76.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC----CCc--ceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS----IHV--VDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~----~p~--~D~v~~~ 131 (244)
...++||||||+|.++..+++++|+.+ ++++|. +.+++.++++ .+++++.+|+.+. ++. .|.|++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~-v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKN-FLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 347999999999999999999999999 999999 8898887642 5899999998642 343 3877766
Q ss_pred cccccCCHH------HHHHHHHHHHHHcCCCCEEEEec
Q 041308 132 WVLTTWTDD------ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 132 ~~lh~~~~~------~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+..++.... ....++++++++|||||.|++..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 543321110 01368999999999999999865
No 84
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.33 E-value=5.2e-12 Score=105.87 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=72.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCC---CeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc--ceEEEecccccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFI---CEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV--VDAIFMKWVLTT 136 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~ 136 (244)
...+|||+|||+|.++..+++..+.. + ++++|+ +.+++.|++. +++.+..+|..+. ++. .|+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~-v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQ-LFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCe-EEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---
Confidence 45789999999999999999887743 5 899999 9999988764 7899999998763 544 499986543
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ..+++++|+|||||+++++..
T Consensus 161 --~----~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 161 --P----CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred --C----CCHHHHHhhccCCCEEEEEeC
Confidence 1 236889999999999999764
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.33 E-value=5.3e-11 Score=93.97 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=91.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CC-eeEEeCCCCCCCCc--ceEEEecc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PE-VTHIGGDMFKSIHV--VDAIFMKW 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~-i~~~~gd~~~~~p~--~D~v~~~~ 132 (244)
.+..+|||+|||+|.++..+++. ..+ ++++|. +.+++.++++ .+ +.++.+|+.+.++. .|+|++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKK-VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cce-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECC
Confidence 45679999999999999999987 467 999999 8998888542 12 88899999887554 49999875
Q ss_pred ccccCC-------------------HHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC
Q 041308 133 VLTTWT-------------------DDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK 193 (244)
Q Consensus 133 ~lh~~~-------------------~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 193 (244)
.+.... ......+++++.++|+|||.+++.....
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--------------------------- 151 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--------------------------- 151 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc---------------------------
Confidence 543211 2224568999999999999998754210
Q ss_pred ceecCHHHHHHHHHhCCCCeEEEEE
Q 041308 194 GKHKTEQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 194 ~~~~t~~e~~~ll~~aGf~~~~~~~ 218 (244)
...+++.+++.++||++..+..
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeeee
Confidence 1135678899999999877644
No 86
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.33 E-value=8.2e-12 Score=100.86 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=80.1
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~ 124 (244)
...+++.++ .++..+|||||||+|..+..+++... +.+ ++++|. +.+++.++++ .+++++.+|..+.++.
T Consensus 65 ~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~-V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 65 VAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGK-VVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 445667776 77889999999999999998888753 467 999999 9999888763 5799999999776432
Q ss_pred ---ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 ---VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 ---~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++....++++ +.+.+.|||||++++..
T Consensus 143 ~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 143 NAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 49999887765543 35667899999999853
No 87
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.32 E-value=3.6e-11 Score=101.29 Aligned_cols=96 Identities=21% Similarity=0.145 Sum_probs=76.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEeccc-
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKWV- 133 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~~- 133 (244)
+..+|||+|||+|.++..+++..|+.+ ++++|+ +.+++.|+++ .+++++.+|+++.++. .|+|+++--
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~-v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAE-VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 457999999999999999999999889 999999 9999988863 4799999999887654 499998511
Q ss_pred ------------cccCCH----------HHHHHHHHHHHHHcCCCCEEEE
Q 041308 134 ------------LTTWTD----------DECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 134 ------------lh~~~~----------~~~~~~l~~~~~~L~pgG~lii 161 (244)
++|-+. +....+++++.+.|+|||++++
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 111110 1235789999999999999885
No 88
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.32 E-value=1.7e-11 Score=95.57 Aligned_cols=141 Identities=19% Similarity=0.215 Sum_probs=101.9
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC---CCc--ceEEEecccccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS---IHV--VDAIFMKWVLTT 136 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~---~p~--~D~v~~~~~lh~ 136 (244)
.+++.+|||+|||.|.+...|.+. .+++ +.++++ +..+..+.+ ..++++++|+.+. +|. .|.|+++.+|.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~-g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVD-GYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCe-EEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 467799999999999999888875 5788 999999 776666654 5788999999776 454 399999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh---------------hcccHhhhhhhccCceecCHHH
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL---------------LEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~---------------~~~d~~~~~~~~~~~~~~t~~e 201 (244)
+..++ ++|+++.|+ |.+.++.=+-. .-|..+.. .|++ +++=+..|..+
T Consensus 88 ~~~P~--~vL~EmlRV---gr~~IVsFPNF-----g~W~~R~~l~~~GrmPvt~~lPy~WYd-------TPNih~~Ti~D 150 (193)
T PF07021_consen 88 VRRPD--EVLEEMLRV---GRRAIVSFPNF-----GHWRNRLQLLLRGRMPVTKALPYEWYD-------TPNIHLCTIKD 150 (193)
T ss_pred HhHHH--HHHHHHHHh---cCeEEEEecCh-----HHHHHHHHHHhcCCCCCCCCCCCcccC-------CCCcccccHHH
Confidence 88764 778888665 55555432100 01111111 1111 45556679999
Q ss_pred HHHHHHhCCCCeEEEEEcccee
Q 041308 202 FKQLGFSTGFPHLRAFISIIFT 223 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~~~~~~ 223 (244)
++++.++.|+++.+...+....
T Consensus 151 Fe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 151 FEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHHHHHCCCEEEEEEEEcCCC
Confidence 9999999999999987776543
No 89
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.32 E-value=4.6e-11 Score=104.12 Aligned_cols=137 Identities=15% Similarity=0.080 Sum_probs=99.9
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc---ceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV---VDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~---~D~v~~~~~ 133 (244)
++..+|||+|||+|.++..+++..|..+ ++++|. +.+++.++++ .+++++.+|+++. .+. .|+|+++--
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~-VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAF-VRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCC
Confidence 3456999999999999999999999989 999999 9999988864 4799999999875 432 499998643
Q ss_pred cccCCH-----------------------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhh
Q 041308 134 LTTWTD-----------------------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIY 190 (244)
Q Consensus 134 lh~~~~-----------------------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~ 190 (244)
...-.+ +-..++++++.+.|+|||.+++ |... .
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~--~--------------------- 384 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF--D--------------------- 384 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc--c---------------------
Confidence 211000 1123677788889999998775 3211 0
Q ss_pred ccCceecCHHHHHHHHHhCCCCeEEE-EEccceeEEEeecCch
Q 041308 191 RAKGKHKTEQEFKQLGFSTGFPHLRA-FISIIFTLFLSSKSNF 232 (244)
Q Consensus 191 ~~~~~~~t~~e~~~ll~~aGf~~~~~-~~~~~~~~~~~~~~~~ 232 (244)
..+.+.+++++.||+.+++ .+..+..+++++++..
T Consensus 385 -------Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~~~ 420 (423)
T PRK14966 385 -------QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMK 420 (423)
T ss_pred -------HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEEhh
Confidence 1456788999999987665 5566667777776543
No 90
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.31 E-value=1.4e-11 Score=98.50 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=76.3
Q ss_pred hccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC----C
Q 041308 57 LDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI----H 123 (244)
Q Consensus 57 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~----p 123 (244)
+..++ ..+..+|||+|||+|.++..+++.. +..+ ++++|. +.+++.++++ +++.++.+|+.+.+ +
T Consensus 33 l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~-v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 33 LSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGK-VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 34455 6777899999999999999998764 5567 999999 9999877642 57889999986532 2
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
..|+|++... ..+...+++++.+.|||||++++
T Consensus 111 ~~D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 111 KFDRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCCEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 3599987532 22345789999999999999986
No 91
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.31 E-value=1.5e-11 Score=99.62 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=79.5
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH- 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p- 123 (244)
...+++.++ .++..+|||+|||+|.++..+++..+ +.+ ++++|. +.+++.++++ .+++++.+|..+..+
T Consensus 66 ~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~-V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 66 VAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGL-VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 345666666 77889999999999999999998864 467 999999 9999888753 579999999977543
Q ss_pred --cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 124 --VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 124 --~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
..|+|++.....+++ +.+.+.|+|||++++.
T Consensus 144 ~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 259999887655443 4567889999999984
No 92
>PRK14967 putative methyltransferase; Provisional
Probab=99.30 E-value=4.6e-11 Score=97.31 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=76.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc--ceEEEecccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV--VDAIFMKWVL 134 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~--~D~v~~~~~l 134 (244)
.++..+|||+|||+|.++..+++.. ..+ ++++|+ +.+++.++++ .++.++.+|+.+.++. .|+|++.--.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~-v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGS-VTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPY 111 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCe-EEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCC
Confidence 5566899999999999999988763 346 999999 8899877653 3578889998776543 4999987433
Q ss_pred ccCCH-------------------HHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 135 TTWTD-------------------DECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 135 h~~~~-------------------~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
+.-+. .....+++++.+.|||||+++++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 22111 113568899999999999999875543
No 93
>PHA03411 putative methyltransferase; Provisional
Probab=99.30 E-value=2.7e-11 Score=99.99 Aligned_cols=124 Identities=11% Similarity=0.080 Sum_probs=93.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCCC-c-ceEEEeccccccCCHH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSIH-V-VDAIFMKWVLTTWTDD 140 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~p-~-~D~v~~~~~lh~~~~~ 140 (244)
...+|||+|||+|.++..++++.+..+ ++++|+ +.+++.++++ ++++++.+|+++... . .|+|+++..+++.+..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~-V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEK-IVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTT 142 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCch
Confidence 347999999999999999988877778 999999 9999988865 689999999987632 2 5999999888886644
Q ss_pred HH------------------HHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 141 EC------------------KLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 141 ~~------------------~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
+. ..+++.....|+|+|.++++- ... +. + +...+.+++
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y---ss~---~~-------y-----------~~sl~~~~y 198 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY---SGR---PY-------Y-----------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE---ecc---cc-------c-----------cccCCHHHH
Confidence 22 245666778888888777651 111 10 0 223458899
Q ss_pred HHHHHhCCCCe
Q 041308 203 KQLGFSTGFPH 213 (244)
Q Consensus 203 ~~ll~~aGf~~ 213 (244)
+.+++++||..
T Consensus 199 ~~~l~~~g~~~ 209 (279)
T PHA03411 199 LKWSKQTGLVT 209 (279)
T ss_pred HHHHHhcCcEe
Confidence 99999999974
No 94
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.30 E-value=6.5e-11 Score=99.83 Aligned_cols=131 Identities=16% Similarity=0.057 Sum_probs=95.7
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEec-----
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMK----- 131 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~----- 131 (244)
.+|||+|||+|.++..+++..|+.+ ++++|+ +.+++.++++ .+++++.+|++++++. .|+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~-v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAE-VIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCC
Confidence 6899999999999999999999888 999999 9999888863 3599999999887654 5999885
Q ss_pred --------cccccCCH----------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC
Q 041308 132 --------WVLTTWTD----------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK 193 (244)
Q Consensus 132 --------~~lh~~~~----------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 193 (244)
.+.+|-+. +....+++++.+.|+|||.+++ |... .
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~-e~g~--~------------------------ 247 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC-EIGN--W------------------------ 247 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECc--c------------------------
Confidence 22332221 1356789999999999999876 2210 0
Q ss_pred ceecCHHHHHHHHH-hCCCCeEEE-EEccceeEEEeec
Q 041308 194 GKHKTEQEFKQLGF-STGFPHLRA-FISIIFTLFLSSK 229 (244)
Q Consensus 194 ~~~~t~~e~~~ll~-~aGf~~~~~-~~~~~~~~~~~~~ 229 (244)
..+.+.+++. +.||..+++ .+..+..+++.++
T Consensus 248 ----q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 248 ----QQKSLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred ----HHHHHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 0335566777 478876554 4455555666554
No 95
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=2.9e-11 Score=100.36 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=90.0
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV-V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~-~ 125 (244)
+-+++.++ .....+|||+|||.|.++..+++..|..+ ++.+|. ...++.++++ ++..+...|.+++... .
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~-vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAK-LTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCe-EEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 44888887 55555999999999999999999999989 999999 8899999875 3335777888888554 6
Q ss_pred eEEEecccccc---CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 126 DAIFMKWVLTT---WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 126 D~v~~~~~lh~---~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+|+++--+|. ....-..++++++.+.|++||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 99999999985 2233445899999999999999999765
No 96
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.29 E-value=9e-11 Score=96.53 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=105.4
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCC--CCeEEEeec-hHHHHhCCCC------CCe-eEEeCCCCCC--C----CcceEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCF--ICEGINFDL-PEVVAKAPSI------PEV-THIGGDMFKS--I----HVVDAI 128 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-~~~i~~a~~~------~~i-~~~~gd~~~~--~----p~~D~v 128 (244)
..-+||||.||+|.+....+..+|. .+ +...|. +..++..++. ..+ +|..+|+|+. + |..+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~-i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDS-ILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCce-EEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 4579999999999999999999997 56 888898 8777777652 444 9999999975 3 335999
Q ss_pred EeccccccCCHHH-HHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC----ceecCHHHHH
Q 041308 129 FMKWVLTTWTDDE-CKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK----GKHKTEQEFK 203 (244)
Q Consensus 129 ~~~~~lh~~~~~~-~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~t~~e~~ 203 (244)
+.+-++.-|+|.+ +...++.+.+++.|||+++..-.-+.+. .+..+..+. . +..+ -+.||.+|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-----le~IAr~Lt---s--Hr~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-----LEMIARVLT---S--HRDGKAWVMRRRSQAEMD 283 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-----hHHHHHHHh---c--ccCCCceEEEecCHHHHH
Confidence 9999999999976 4447999999999999999865322221 111111111 0 0111 3568999999
Q ss_pred HHHHhCCCCeEEEE
Q 041308 204 QLGFSTGFPHLRAF 217 (244)
Q Consensus 204 ~ll~~aGf~~~~~~ 217 (244)
+|+++|||+..+..
T Consensus 284 ~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 284 QLVEAAGFEKIDQR 297 (311)
T ss_pred HHHHHcCCchhhhe
Confidence 99999999966643
No 97
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.27 E-value=2.1e-11 Score=97.31 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=78.4
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CC-c
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IH-V 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p-~ 124 (244)
+++.++ ..+..+|||+|||+|.++..+++..|+.+ ++++|. +.+++.++++ .+++++.+|..+. +. .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~-V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGR-VIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 455555 66778999999999999999998888888 999999 9999888753 5789999998652 22 2
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|.+++.. . .....+++++.+.|+|||++++...
T Consensus 110 ~d~v~~~~-----~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG-----G-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCEEEEEC-----C-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 46655421 1 2235789999999999999998754
No 98
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.27 E-value=3.6e-11 Score=104.10 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=79.1
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCC---CCCcc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFK---SIHVV 125 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~---~~p~~ 125 (244)
+++.+. -.....+||||||+|.++..+++++|+.. ++++|+ +.+++.+.+. .++.++.+|+.. .++.+
T Consensus 114 ~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~-~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKL-FIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCC-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 444444 33456999999999999999999999999 999999 8887777542 689999999843 35553
Q ss_pred --eEEEeccccccCCHH-----HHHHHHHHHHHHcCCCCEEEEec
Q 041308 126 --DAIFMKWVLTTWTDD-----ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 126 --D~v~~~~~lh~~~~~-----~~~~~l~~~~~~L~pgG~lii~d 163 (244)
|.|++.+... |+.. ....++++++|+|+|||.+.+..
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 8888654332 1111 11478999999999999999964
No 99
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.24 E-value=5.5e-11 Score=92.11 Aligned_cols=98 Identities=20% Similarity=0.169 Sum_probs=81.8
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCcc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHVV 125 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~~ 125 (244)
.+..+. ..++++++|||||||..+++.+..+|..+ ++++|. +++++..+++ +++.++.||.-+. +|..
T Consensus 26 ~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~-v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 26 TLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGR-VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCce-EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 344555 78889999999999999999998899999 999998 8888777654 8999999998665 4446
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
|+|++.-.- . ...+|+.+...|||||++++
T Consensus 104 daiFIGGg~-~-----i~~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 104 DAIFIGGGG-N-----IEEILEAAWERLKPGGRLVA 133 (187)
T ss_pred CEEEECCCC-C-----HHHHHHHHHHHcCcCCeEEE
Confidence 999988762 2 24789999999999999997
No 100
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.22 E-value=2.1e-11 Score=96.56 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=101.2
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeE-EeC---CCCCC-CCc-c
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTH-IGG---DMFKS-IHV-V 125 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~-~~g---d~~~~-~p~-~ 125 (244)
..+++...+ ..+..++||+|||||.....+-..... .+++|+ .+|+++|.++.-... .++ +|.+. .+. .
T Consensus 114 l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~---ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~ 189 (287)
T COG4976 114 LAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADR---LTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERF 189 (287)
T ss_pred HHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhh---ccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcc
Confidence 444555555 455899999999999999988876544 678899 999999987522111 111 13332 222 5
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|+|+...|+-.+-+- ..++.-+...|+|||.|.+.-...++... + ........ -.+...++++
T Consensus 190 DLi~AaDVl~YlG~L--e~~~~~aa~~L~~gGlfaFSvE~l~~~~~---f----~l~ps~Ry--------AH~~~YVr~~ 252 (287)
T COG4976 190 DLIVAADVLPYLGAL--EGLFAGAAGLLAPGGLFAFSVETLPDDGG---F----VLGPSQRY--------AHSESYVRAL 252 (287)
T ss_pred cchhhhhHHHhhcch--hhHHHHHHHhcCCCceEEEEecccCCCCC---e----ecchhhhh--------ccchHHHHHH
Confidence 999999999877764 47889999999999999997555444321 0 00111111 1246678999
Q ss_pred HHhCCCCeEEEEEcc
Q 041308 206 GFSTGFPHLRAFISI 220 (244)
Q Consensus 206 l~~aGf~~~~~~~~~ 220 (244)
++..||+++.+++..
T Consensus 253 l~~~Gl~~i~~~~tt 267 (287)
T COG4976 253 LAASGLEVIAIEDTT 267 (287)
T ss_pred HHhcCceEEEeeccc
Confidence 999999999997753
No 101
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.22 E-value=9.8e-11 Score=98.91 Aligned_cols=94 Identities=18% Similarity=0.107 Sum_probs=71.1
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc-ceEEEecccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV-VDAIFMKWVL 134 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~-~D~v~~~~~l 134 (244)
.+..+|||+|||+|.++..+++.. ..+ ++++|+ +.+++.++++ .++.+..+|.....+. .|+|+++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~-V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAK-VVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCe-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH
Confidence 345899999999999998888653 346 999999 9999888763 3566666664332332 5999986543
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ....+++++.+.|||||++++...
T Consensus 236 ~-----~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 E-----VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred H-----HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2 345789999999999999998654
No 102
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.21 E-value=8.7e-11 Score=95.58 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=107.7
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CCc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IHV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p~ 124 (244)
|+..+...+...+|||+|||+|..+..++++.++++ ++++++ +.+.+.|+++ +||+++.+|+.+. .+.
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~-I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAK-IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF 113 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCc-EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc
Confidence 334443244578999999999999999999988899 999999 9999988864 8999999998654 222
Q ss_pred --ceEEEeccccccCCHH----------------HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhh
Q 041308 125 --VDAIFMKWVLTTWTDD----------------ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFV 186 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~----------------~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~ 186 (244)
.|+|+++--.+..... .-..+++.+.+.|||||++.++.. ..
T Consensus 114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r---~e----------------- 173 (248)
T COG4123 114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR---PE----------------- 173 (248)
T ss_pred cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec---HH-----------------
Confidence 4999988665433222 234688999999999999999764 11
Q ss_pred hhhhccCceecCHHHHHHHHHhCCCCeEEEEEccc------eeEEEeecCch
Q 041308 187 MTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISII------FTLFLSSKSNF 232 (244)
Q Consensus 187 ~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~------~~~~~~~~~~~ 232 (244)
...|+.+++.+.+|...++..+.. ...++-+.|..
T Consensus 174 -----------rl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~ 214 (248)
T COG4123 174 -----------RLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGG 214 (248)
T ss_pred -----------HHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCC
Confidence 145778889999999988876532 34455555543
No 103
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.21 E-value=5.8e-11 Score=100.99 Aligned_cols=94 Identities=19% Similarity=0.127 Sum_probs=76.2
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEeccc---
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKWV--- 133 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~~--- 133 (244)
.+|||+|||+|.++..+++.+|+.+ ++++|+ +.+++.|+++ .+++++.+|+++.++. .|+|+++--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~-V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAE-VDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 6899999999999999999999999 999999 9999988764 4699999999877654 599998621
Q ss_pred ----------cccCCH----------HHHHHHHHHHHHHcCCCCEEEE
Q 041308 134 ----------LTTWTD----------DECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 134 ----------lh~~~~----------~~~~~~l~~~~~~L~pgG~lii 161 (244)
++|-+. +-...+++++.+.|+|||++++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 121111 2235789999999999999986
No 104
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.21 E-value=1.2e-10 Score=92.30 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=73.6
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC---------CCc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS---------IHV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~---------~p~ 124 (244)
+.+.+...+++.+|||+|||+|.++..++++. +..+ ++++|+ +.+ ..++++++.+|+.+. ++.
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~-v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGR-VIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCce-EEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhCC
Confidence 44445446778999999999999999999886 4567 999999 543 236788888998653 233
Q ss_pred --ceEEEecccc--------ccCC-HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 --VDAIFMKWVL--------TTWT-DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 --~D~v~~~~~l--------h~~~-~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|+|++.... +|.. .+...+++++++++|+|||++++.
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 4999975332 1111 122357899999999999999985
No 105
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.20 E-value=2.8e-10 Score=103.06 Aligned_cols=129 Identities=17% Similarity=0.082 Sum_probs=94.0
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEecccc-
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKWVL- 134 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~~l- 134 (244)
..+|||+|||+|.++..+++..|+.+ ++++|+ +.+++.|+++ ++++++.+|+++.++. .|+|+++--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~-v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNAN-VIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 46899999999999999999999999 999999 9999988863 4789999999877654 5999984311
Q ss_pred -------------ccCC----------HHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc
Q 041308 135 -------------TTWT----------DDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 191 (244)
Q Consensus 135 -------------h~~~----------~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 191 (244)
.+-+ -+-...+++++.+.|+|||.+++ |.. ..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig--~~---------------------- 272 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIG--FK---------------------- 272 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EEC--Cc----------------------
Confidence 1100 01234578889999999999876 321 00
Q ss_pred cCceecCHHHHHHHHHhCCCCeEEE-EEccceeEEE
Q 041308 192 AKGKHKTEQEFKQLGFSTGFPHLRA-FISIIFTLFL 226 (244)
Q Consensus 192 ~~~~~~t~~e~~~ll~~aGf~~~~~-~~~~~~~~~~ 226 (244)
..+.+.+++.+.||..+++ .+..+...++
T Consensus 273 ------q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v 302 (506)
T PRK01544 273 ------QEEAVTQIFLDHGYNIESVYKDLQGHSRVI 302 (506)
T ss_pred ------hHHHHHHHHHhcCCCceEEEecCCCCceEE
Confidence 1456788889999987765 3455544333
No 106
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.20 E-value=1.8e-10 Score=99.17 Aligned_cols=107 Identities=17% Similarity=0.031 Sum_probs=78.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~ 124 (244)
+..++.... ++++.+|||+|||||.++..++.. ..+ ++++|+ +.|++.++.+ +++.+..+|+.+. ++.
T Consensus 171 a~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~-v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 171 ARAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAK-VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSS 246 (329)
T ss_pred HHHHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCe-EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCccc
Confidence 334444444 677889999999999999887654 456 999999 9999877753 4578899999764 433
Q ss_pred --ceEEEeccccc-------cCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 --VDAIFMKWVLT-------TWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 --~D~v~~~~~lh-------~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++..-.. +...+-...+++++.+.|+|||++++.-
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 49999863321 1122334689999999999999999864
No 107
>PRK04457 spermidine synthase; Provisional
Probab=99.20 E-value=4e-11 Score=99.84 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=77.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CCc-ceEEEec
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IHV-VDAIFMK 131 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p~-~D~v~~~ 131 (244)
+++.+|||||||+|.++..+++..|+.+ ++++|+ |.+++.+++. ++++++.+|..+. .+. .|+|++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTR-QTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 3467999999999999999999999999 999999 9999988752 6899999998653 333 4999875
Q ss_pred ccccc--CCHH-HHHHHHHHHHHHcCCCCEEEEe
Q 041308 132 WVLTT--WTDD-ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 132 ~~lh~--~~~~-~~~~~l~~~~~~L~pgG~lii~ 162 (244)
. ++. .+.. ....+++++.+.|+|||.+++.
T Consensus 144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3 222 1111 1258999999999999999984
No 108
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.20 E-value=4.7e-10 Score=92.87 Aligned_cols=123 Identities=15% Similarity=0.050 Sum_probs=90.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCCCC-----cceEEEeccccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKSIH-----VVDAIFMKWVLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~~p-----~~D~v~~~~~lh 135 (244)
+..++||+|||+|.++..+++..|..+ ++++|. +.+++.++++ .+++++.+|+++.++ ..|+|+++--..
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~-v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIE-LHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 345899999999999999999988888 999999 9999988864 346889999877543 249999774321
Q ss_pred ------cCCHH------------------HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc
Q 041308 136 ------TWTDD------------------ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 191 (244)
Q Consensus 136 ------~~~~~------------------~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 191 (244)
..+++ -...+++.+.+.|+|||++++.-. ..
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~---~~---------------------- 219 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS---ER---------------------- 219 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---cc----------------------
Confidence 11111 124788888899999999997421 01
Q ss_pred cCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 192 AKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 192 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
..+++.+++++.||+..-..+-
T Consensus 220 ------~~~~v~~~l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 220 ------QAPLAVEAFARAGLIARVASSE 241 (251)
T ss_pred ------hHHHHHHHHHHCCCCceeeEcc
Confidence 0345677888899886655443
No 109
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.16 E-value=3e-10 Score=79.65 Aligned_cols=92 Identities=18% Similarity=0.160 Sum_probs=75.2
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC------CCCCeeEEeCCCCCCC--C--cceEEEecccccc
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP------SIPEVTHIGGDMFKSI--H--VVDAIFMKWVLTT 136 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~------~~~~i~~~~gd~~~~~--p--~~D~v~~~~~lh~ 136 (244)
+++|+|||+|.++..+++ .+..+ ++++|. +..++.++ ...++++..+|+.+.. + ..|+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCE-EEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 589999999999999998 55667 999999 77776665 1267899999998763 2 2499999999987
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+ .+....+++++.+.|+|||.+++.
T Consensus 79 ~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 5 445678999999999999999875
No 110
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.16 E-value=2.1e-10 Score=92.65 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=76.0
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc---
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--- 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--- 124 (244)
.+++.++ ..+..+|||+|||+|.++..+++... + ++++|. +.+++.++++ .++++..+|..+.++.
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~-v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--R-VFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--E-EEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 4555565 67789999999999999987777653 6 999999 9998888753 4699999998776443
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++...++++ .+++.+.|+|||++++.-
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLKEGGILVAPV 175 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcCCCcEEEEEE
Confidence 5999998776554 345678999999999854
No 111
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=99.14 E-value=9e-11 Score=96.29 Aligned_cols=141 Identities=19% Similarity=0.286 Sum_probs=86.7
Q ss_pred CcceEEEEcCC---ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CC--eeEEeCCCCCC---CC--c--c--
Q 041308 65 GVKRLVDVGGS---AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PE--VTHIGGDMFKS---IH--V--V-- 125 (244)
Q Consensus 65 ~~~~vLDvG~G---~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~--i~~~~gd~~~~---~p--~--~-- 125 (244)
+...+|||||| .|+.-.-..+..|+.+ ++.+|. |-++.+++.. ++ ..++.+|+.++ +. . .
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aR-VVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDAR-VVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-E-EEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCce-EEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 68999999999 3444443444579999 999999 9999998852 45 89999999886 33 2 1
Q ss_pred e-----EEEeccccccCCH-HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCH
Q 041308 126 D-----AIFMKWVLTTWTD-DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTE 199 (244)
Q Consensus 126 D-----~v~~~~~lh~~~~-~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~ 199 (244)
| .+++..+|||++| ++...+++.++++|.||++|+|.+.+.+.. +... .......... ......||.
T Consensus 147 D~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~---p~~~--~~~~~~~~~~--~~~~~~Rs~ 219 (267)
T PF04672_consen 147 DFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA---PERA--EALEAVYAQA--GSPGRPRSR 219 (267)
T ss_dssp -TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS---HHHH--HHHHHHHHHC--CS----B-H
T ss_pred CCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC---HHHH--HHHHHHHHcC--CCCceecCH
Confidence 4 6889999999987 678899999999999999999998876433 2111 1122222222 334678899
Q ss_pred HHHHHHHHhCCCCeEE
Q 041308 200 QEFKQLGFSTGFPHLR 215 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~ 215 (244)
+|+.++| .||+.++
T Consensus 220 ~ei~~~f--~g~elve 233 (267)
T PF04672_consen 220 EEIAAFF--DGLELVE 233 (267)
T ss_dssp HHHHHCC--TTSEE-T
T ss_pred HHHHHHc--CCCccCC
Confidence 9999999 5888765
No 112
>PRK01581 speE spermidine synthase; Validated
Probab=99.14 E-value=6.5e-10 Score=95.22 Aligned_cols=140 Identities=13% Similarity=0.010 Sum_probs=95.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-------------CCCeeEEeCCCCCCCC---c-c
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-------------IPEVTHIGGDMFKSIH---V-V 125 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-------------~~~i~~~~gd~~~~~p---~-~ 125 (244)
.++.+||++|||+|..++.+++..+..+ ++.+|+ +.|++.|++ .+|++++.+|..+.++ . .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~-It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLH-VDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 4568999999999999999997544456 999999 999999884 2799999999876432 2 4
Q ss_pred eEEEecccc---ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 126 DAIFMKWVL---TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 126 D~v~~~~~l---h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
|+|++...- +....--...+++.+++.|+|||.+++... . +.. ..+. ...+
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~----s---p~~-----~~~~--------------~~~i 281 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN----S---PAD-----APLV--------------YWSI 281 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC----C---hhh-----hHHH--------------HHHH
Confidence 999977421 111112235789999999999999988532 1 110 0000 1225
Q ss_pred HHHHHhCCCCeEEEEEc----cceeEEEeecC
Q 041308 203 KQLGFSTGFPHLRAFIS----IIFTLFLSSKS 230 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~----~~~~~~~~~~~ 230 (244)
...++++||.+...... ++..++.++.+
T Consensus 282 ~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 282 GNTIEHAGLTVKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred HHHHHHhCCceEEEEEecCCCCCceEEEEEeC
Confidence 68889999988876553 22355666643
No 113
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.14 E-value=4.6e-11 Score=87.09 Aligned_cols=95 Identities=23% Similarity=0.211 Sum_probs=75.0
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CCc--ceEEEeccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IHV--VDAIFMKWV 133 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p~--~D~v~~~~~ 133 (244)
.+|||+|||+|.++..+++.. ..+ ++++|+ |..++.++.+ ++++++.+|+++. ++. .|+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~-~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AAR-VTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCE-EEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCe-EEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 689999999999999999998 667 999999 9888888752 6899999998663 333 499999877
Q ss_pred cccCC-H-----HHHHHHHHHHHHHcCCCCEEEEec
Q 041308 134 LTTWT-D-----DECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 134 lh~~~-~-----~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+... . +....+++++.+.|||||.++++-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 65432 1 123578999999999999998863
No 114
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.14 E-value=7.6e-10 Score=89.55 Aligned_cols=100 Identities=11% Similarity=0.013 Sum_probs=84.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------------------CCCeeEEeCCCCCCCC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------------------IPEVTHIGGDMFKSIH 123 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------------------~~~i~~~~gd~~~~~p 123 (244)
..+..+||+.|||.|.-+..|++++ .+ ++++|+ +..++.+.+ ..++++.++|+|+.-+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G--~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKG--VK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCC--Cc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 3455899999999999999999875 45 999999 877777422 1579999999998622
Q ss_pred ------cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 124 ------VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 124 ------~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
..|+|+=+.++++++++.+.+-.+.+.++|+|||.++++...
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 249999999999999999999999999999999999987653
No 115
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.2e-09 Score=91.33 Aligned_cols=125 Identities=17% Similarity=0.133 Sum_probs=88.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCee----EEeCCCCCCCC--cceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVT----HIGGDMFKSIH--VVDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~----~~~gd~~~~~p--~~D~v~~~~~ 133 (244)
.++.++||+|||+|.++++.++.... + ++++|+ |..++.++++ ..+. ....+..+... .+|+|+.+-
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~-~-v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI- 237 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAK-K-VVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI- 237 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCc-e-EEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-
Confidence 47799999999999999999987643 5 899999 9999998875 2233 22222222222 259988664
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
| .+-...+...+.+.|||||++++.-.... -.+.+.+.+.++||.+
T Consensus 238 L----A~vl~~La~~~~~~lkpgg~lIlSGIl~~------------------------------q~~~V~~a~~~~gf~v 283 (300)
T COG2264 238 L----AEVLVELAPDIKRLLKPGGRLILSGILED------------------------------QAESVAEAYEQAGFEV 283 (300)
T ss_pred h----HHHHHHHHHHHHHHcCCCceEEEEeehHh------------------------------HHHHHHHHHHhCCCeE
Confidence 3 23356889999999999999998442110 0456788889999999
Q ss_pred EEEEEccceeEE
Q 041308 214 LRAFISIIFTLF 225 (244)
Q Consensus 214 ~~~~~~~~~~~~ 225 (244)
+++..-..=..+
T Consensus 284 ~~~~~~~eW~~i 295 (300)
T COG2264 284 VEVLEREEWVAI 295 (300)
T ss_pred eEEEecCCEEEE
Confidence 998776443333
No 116
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.10 E-value=2.9e-10 Score=91.94 Aligned_cols=139 Identities=19% Similarity=0.166 Sum_probs=99.9
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------------------CCCeeEEe
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------------------IPEVTHIG 115 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------------------~~~i~~~~ 115 (244)
.+++.+. .++..+||..|||.|.-+..|++++ .+ ++++|+ +..++.+.+ ..+|++.+
T Consensus 28 ~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~G--~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 28 EYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQG--HD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHT-TSTSEEEEETTTTTSCHHHHHHHTT--EE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHhcC-CCCCCeEEEeCCCChHHHHHHHHCC--Ce-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 3333333 5667899999999999999999875 46 999999 888877511 14689999
Q ss_pred CCCCCCCC----cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC-CchHHhhhhhcccHhhhhhh
Q 041308 116 GDMFKSIH----VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS-NESQRTRALLEGDIFVMTIY 190 (244)
Q Consensus 116 gd~~~~~p----~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~-~~~~~~~~~~~~d~~~~~~~ 190 (244)
+|+|+.-+ ..|+|+=+..|+.++++.+.+-.+.+.+.|+|||+++++-...+... ..|+
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPP---------------- 167 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPP---------------- 167 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----------------
T ss_pred cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcC----------------
Confidence 99998522 24999999999999999999999999999999999444333222211 1111
Q ss_pred ccCceecCHHHHHHHHHhCCCCeEEEEE
Q 041308 191 RAKGKHKTEQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 191 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 218 (244)
-..+.+++++++. .+|++..+..
T Consensus 168 ----f~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 168 ----FSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp --------HHHHHHHHT-TTEEEEEEEE
T ss_pred ----CCCCHHHHHHHhc-CCcEEEEEec
Confidence 1135789999997 8898877754
No 117
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.10 E-value=4.5e-10 Score=94.48 Aligned_cols=124 Identities=17% Similarity=0.089 Sum_probs=86.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC--cceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH--VVDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p--~~D~v~~~~~ 133 (244)
.++.+|||+|||||.+++..++.+.. + ++++|+ |..++.|+++ .++.+. . ..+.+ .+|+|+.+-.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~-~-v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~ 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAK-K-VVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANIL 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBS-E-EEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES-
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCC-e-EEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCC
Confidence 45689999999999999999987543 5 999999 9999888864 455442 1 22222 3599986643
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
. +....++..+.+.|+|||++++.-.... ..+++.+.+++ ||++
T Consensus 235 ~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~~------------------------------~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 235 A-----DVLLELAPDIASLLKPGGYLILSGILEE------------------------------QEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp H-----HHHHHHHHHCHHHEEEEEEEEEEEEEGG------------------------------GHHHHHHHHHT-TEEE
T ss_pred H-----HHHHHHHHHHHHhhCCCCEEEEccccHH------------------------------HHHHHHHHHHC-CCEE
Confidence 3 4456788999999999999998443211 14566777876 9999
Q ss_pred EEEEEccceeEEEee
Q 041308 214 LRAFISIIFTLFLSS 228 (244)
Q Consensus 214 ~~~~~~~~~~~~~~~ 228 (244)
.+......=..++..
T Consensus 279 ~~~~~~~~W~~l~~~ 293 (295)
T PF06325_consen 279 VEEREEGEWVALVFK 293 (295)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEEECCEEEEEEE
Confidence 888765544444433
No 118
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=2e-09 Score=86.16 Aligned_cols=149 Identities=16% Similarity=0.169 Sum_probs=95.9
Q ss_pred HHHhccCC-CCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------C-----------
Q 041308 54 TSVLDGYD-GFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------P----------- 109 (244)
Q Consensus 54 ~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------~----------- 109 (244)
+..++.++ .|-....+|||||..|.++..+++.+.... +.++|+ +..|..|++. .
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~-iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~ 124 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRR-ILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQF 124 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccce-eeEeeccHHHHHHHHHhccccccccccccCCCcccccccc
Confidence 33444443 356678999999999999999999998777 999999 9899888863 1
Q ss_pred -------------------Ce-------eEEeCCCCCC-CCcceEEEecccc---c-cCCHHHHHHHHHHHHHHcCCCCE
Q 041308 110 -------------------EV-------THIGGDMFKS-IHVVDAIFMKWVL---T-TWTDDECKLIMENYYKALLAGRK 158 (244)
Q Consensus 110 -------------------~i-------~~~~gd~~~~-~p~~D~v~~~~~l---h-~~~~~~~~~~l~~~~~~L~pgG~ 158 (244)
++ -+...|+.+. .|..|+|++-.+- | .|.|+-...+|+++.+.|.|||+
T Consensus 125 ~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGi 204 (288)
T KOG2899|consen 125 GPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGI 204 (288)
T ss_pred ccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcE
Confidence 11 1122223322 3445777654332 2 36688899999999999999999
Q ss_pred EEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCC
Q 041308 159 LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 159 lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 212 (244)
|++ |+ .+... +....+......+ ........++.+..++.+.+.-
T Consensus 205 Lvv-EP----QpWks-Y~kaar~~e~~~~---ny~~i~lkp~~f~~~l~q~~vg 249 (288)
T KOG2899|consen 205 LVV-EP----QPWKS-YKKAARRSEKLAA---NYFKIFLKPEDFEDWLNQIVVG 249 (288)
T ss_pred EEE-cC----CchHH-HHHHHHHHHHhhc---CccceecCHHHHHhhhhhhhhh
Confidence 986 22 21111 2221121111111 2334556788999999998433
No 119
>PRK00811 spermidine synthase; Provisional
Probab=99.08 E-value=3.2e-10 Score=95.47 Aligned_cols=98 Identities=23% Similarity=0.250 Sum_probs=74.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCCCC---c-ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKSIH---V-VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~~p---~-~D~ 127 (244)
+++.+||+||||+|..++.+++..+..+ ++++|+ +.+++.+++. +|++++.+|..+.++ . .|+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~-V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEK-ITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCE-EEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 4568999999999999999997533446 999999 9999988852 689999999876432 2 499
Q ss_pred EEeccccccCCHHH--HHHHHHHHHHHcCCCCEEEEe
Q 041308 128 IFMKWVLTTWTDDE--CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 128 v~~~~~lh~~~~~~--~~~~l~~~~~~L~pgG~lii~ 162 (244)
|++...-+.-+... ...+++.+++.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99865433222211 257899999999999998863
No 120
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.08 E-value=3.7e-10 Score=90.32 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=81.0
Q ss_pred HHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe-
Q 041308 38 NGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG- 115 (244)
Q Consensus 38 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~- 115 (244)
++.|..+--+|...++..+...-+ +...++|+|||+|..++.++..+.+ +++.|. +.|++.+++.+++....
T Consensus 9 a~~Y~~ARP~YPtdw~~~ia~~~~---~h~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~~~y~~t 82 (261)
T KOG3010|consen 9 AADYLNARPSYPTDWFKKIASRTE---GHRLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPPVTYCHT 82 (261)
T ss_pred HHHHhhcCCCCcHHHHHHHHhhCC---CcceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCCcccccC
Confidence 456666666666555555554322 2338999999999888888876544 899999 99999999875543322
Q ss_pred ------CCCCCCC--Cc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCC-EEEE
Q 041308 116 ------GDMFKSI--HV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGR-KLIA 161 (244)
Q Consensus 116 ------gd~~~~~--p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG-~lii 161 (244)
.++.+.+ ++ -|+|++...+|.|.-+ .++++++|+||+.| .+.+
T Consensus 83 ~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle---~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 83 PSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLE---RFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred CccccccccccccCCCcceeeehhhhhHHhhchH---HHHHHHHHHcCCCCCEEEE
Confidence 1222222 22 3999999999998875 78999999999866 5544
No 121
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.08 E-value=5.7e-10 Score=88.62 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=72.1
Q ss_pred CcceEEEEcCCccHH--HHH--HHHHc----C-CCCeEEEeec-hHHHHhCCCC--------------------------
Q 041308 65 GVKRLVDVGGSAGDC--LRI--ILQKH----C-FICEGINFDL-PEVVAKAPSI-------------------------- 108 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~--~~~--l~~~~----p-~~~~~~~~D~-~~~i~~a~~~-------------------------- 108 (244)
+.-+|...||+||.- +.+ +.+.. + ..+ +.+.|+ +.+++.|++.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~-I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFR-ILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEE-EEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceE-EEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 557999999999983 333 22311 2 356 899999 9999998851
Q ss_pred --------CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 109 --------PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 109 --------~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.+|.|...|+.+. .+. .|+|+|+++|-+++++...++++++++.|+|||+|++-..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 5699999999983 222 4999999999999999999999999999999999999653
No 122
>PRK03612 spermidine synthase; Provisional
Probab=99.06 E-value=1.3e-09 Score=99.06 Aligned_cols=98 Identities=20% Similarity=0.181 Sum_probs=75.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC-------------CCeeEEeCCCCCC---CCc-
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI-------------PEVTHIGGDMFKS---IHV- 124 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~-------------~~i~~~~gd~~~~---~p~- 124 (244)
+++.+|||+|||+|..++.+++ +|. .+ ++.+|+ ++|++.++++ +|++++.+|.++. .+.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~-v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQ-VTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCe-EEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 4568999999999999999996 465 56 999999 9999998871 6899999998764 233
Q ss_pred ceEEEeccccccCCHH---HHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 VDAIFMKWVLTTWTDD---ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~---~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++...-...+.. -...+++++++.|||||.+++..
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 4999987543221111 12368999999999999998753
No 123
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=5e-09 Score=87.99 Aligned_cols=130 Identities=21% Similarity=0.195 Sum_probs=93.7
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-ceEEEecccc--c--
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV-VDAIFMKWVL--T-- 135 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~-~D~v~~~~~l--h-- 135 (244)
+|||+|||+|..++.+++..|+.+ ++++|+ +..++.|+++ .++.++.+|.++.++. .|+|+++--- .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~-V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAE-VIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCe-EEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCcc
Confidence 799999999999999999999999 999999 9999988864 4566777799988664 5988876321 1
Q ss_pred -cCCH------------------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCcee
Q 041308 136 -TWTD------------------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKH 196 (244)
Q Consensus 136 -~~~~------------------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 196 (244)
+..+ +-..+++.++.+.|+|||.+++ +...
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~------------------------------ 240 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGL------------------------------ 240 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECC------------------------------
Confidence 1111 2345688889999999888776 2210
Q ss_pred cCHHHHHHHHHhCC-CCeEEEEE-ccceeEEEeec
Q 041308 197 KTEQEFKQLGFSTG-FPHLRAFI-SIIFTLFLSSK 229 (244)
Q Consensus 197 ~t~~e~~~ll~~aG-f~~~~~~~-~~~~~~~~~~~ 229 (244)
-..+.+.+++.+.| |..+.... ..+...++.++
T Consensus 241 ~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 241 TQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred CcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 01567789999999 66555544 44444454444
No 124
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.04 E-value=4e-09 Score=88.43 Aligned_cols=97 Identities=20% Similarity=0.133 Sum_probs=77.8
Q ss_pred cceEEEEcCCccHH--HHH--HHHHcC----CCCeEEEeec-hHHHHhCCCC----------------------------
Q 041308 66 VKRLVDVGGSAGDC--LRI--ILQKHC----FICEGINFDL-PEVVAKAPSI---------------------------- 108 (244)
Q Consensus 66 ~~~vLDvG~G~G~~--~~~--l~~~~p----~~~~~~~~D~-~~~i~~a~~~---------------------------- 108 (244)
.-+|...||+||.- +++ +.+..+ +++ +++.|+ +.+++.|++.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~-I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWK-VFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcE-EEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 47999999999983 333 333222 467 999999 9999888741
Q ss_pred ---------CCeeEEeCCCCCC-CC--c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 109 ---------PEVTHIGGDMFKS-IH--V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 109 ---------~~i~~~~gd~~~~-~p--~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+|.|...|+.++ +| . .|+|+|++++.|++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 3478889999884 44 2 499999999999999999999999999999999998854
No 125
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.03 E-value=9.1e-10 Score=93.96 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=76.7
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~- 124 (244)
..+++.++ .++..+|||+|||+|.++..+++..+. .+ ++++|. +.+++.|++. +++.++.+|..+..+.
T Consensus 70 a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~-VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~ 147 (322)
T PRK13943 70 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF 147 (322)
T ss_pred HHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc
Confidence 34556565 677789999999999999999988753 46 899999 9998887752 5789999998765432
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++...+++++ ..+.+.|+|||++++..
T Consensus 148 ~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 148 APYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 59999876655432 34567899999998854
No 126
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.02 E-value=7e-09 Score=81.78 Aligned_cols=147 Identities=13% Similarity=0.107 Sum_probs=88.8
Q ss_pred ccccccCchHHHH----HHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHH
Q 041308 28 YSYYGKKPKMNGL----MRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVV 102 (244)
Q Consensus 28 ~~~~~~~~~~~~~----f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i 102 (244)
.+....+|+..+. |++.+..+...-.+.+++.+...++...|-|+|||.+.++..+.+ ..+ +.-+|+ +.
T Consensus 31 ~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~-V~SfDLva~-- 104 (219)
T PF05148_consen 31 LKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHK-VHSFDLVAP-- 104 (219)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S--
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---Cce-EEEeeccCC--
Confidence 3345566665554 455555555444566777665234457999999999998866542 345 888897 31
Q ss_pred HhCCCCCCeeEEeCCCCC-CCCcc--eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh
Q 041308 103 AKAPSIPEVTHIGGDMFK-SIHVV--DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL 179 (244)
Q Consensus 103 ~~a~~~~~i~~~~gd~~~-~~p~~--D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~ 179 (244)
+++ ++..|+.+ |++.. |+++++..|-.- +...+++|+.|+|||||.|.|.|...
T Consensus 105 -----n~~--Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~S------------- 161 (219)
T PF05148_consen 105 -----NPR--VTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKS------------- 161 (219)
T ss_dssp -----STT--EEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGG-------------
T ss_pred -----CCC--EEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEecc-------------
Confidence 233 56688855 36653 999999888653 34689999999999999999988621
Q ss_pred hcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEE
Q 041308 180 LEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 180 ~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 218 (244)
+.-..+++.+.+++-||+...-..
T Consensus 162 ---------------Rf~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 162 ---------------RFENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp ---------------G-S-HHHHHHHHHCTTEEEEEEE-
T ss_pred ---------------cCcCHHHHHHHHHHCCCeEEeccc
Confidence 111356778889999999888543
No 127
>PLN02366 spermidine synthase
Probab=99.00 E-value=1.7e-09 Score=91.79 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=74.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCC---CCc--ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKS---IHV--VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~---~p~--~D~ 127 (244)
+++.+||+||||.|.+++.+++. |...+++.+|+ +.+++.+++. +|++++.+|..+. .+. .|+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 55789999999999999999865 65543999999 8899988762 6899999997543 332 599
Q ss_pred EEeccccccCCHH--HHHHHHHHHHHHcCCCCEEEEe
Q 041308 128 IFMKWVLTTWTDD--ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 128 v~~~~~lh~~~~~--~~~~~l~~~~~~L~pgG~lii~ 162 (244)
|++-..-+..+.. -...+++.++++|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9986543322221 1347899999999999999764
No 128
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=4.1e-09 Score=83.46 Aligned_cols=100 Identities=17% Similarity=0.179 Sum_probs=81.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~- 124 (244)
...+++.++ .++..+|||||||+|..+.-+++..- + ++.++. +...+.|+++ .+|.++.||-...+|.
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~-V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--R-VVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--e-EEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 344777777 88999999999999999998888765 6 888998 8888888863 6799999999888775
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|.|+..-..-.+++. +.+.|+|||++++..-
T Consensus 137 aPyD~I~Vtaaa~~vP~~--------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPEA--------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCHH--------HHHhcccCCEEEEEEc
Confidence 3999988877666652 4457899999999665
No 129
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.97 E-value=2.1e-09 Score=82.42 Aligned_cols=123 Identities=17% Similarity=0.136 Sum_probs=88.3
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC--CCc-ceEEEecccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS--IHV-VDAIFMKWVL 134 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~--~p~-~D~v~~~~~l 134 (244)
..+|||+|||.|.++..|++..-..+ .+++|- +..++.|+.. ..|+|.+.|++++ .+. .|+|+=.-++
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 34999999999999999999865555 788897 7777666531 3499999999996 333 4777754444
Q ss_pred ccCC------HHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh
Q 041308 135 TTWT------DDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS 208 (244)
Q Consensus 135 h~~~------~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~ 208 (244)
..++ ......-+..+.+.|+|||+++|..+ -+|..|+.+.++.
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC-------------------------------N~T~dELv~~f~~ 195 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC-------------------------------NFTKDELVEEFEN 195 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEec-------------------------------CccHHHHHHHHhc
Confidence 3322 11112346778889999999999544 2457788888888
Q ss_pred CCCCeEEEEEcc
Q 041308 209 TGFPHLRAFISI 220 (244)
Q Consensus 209 aGf~~~~~~~~~ 220 (244)
.||......+.+
T Consensus 196 ~~f~~~~tvp~p 207 (227)
T KOG1271|consen 196 FNFEYLSTVPTP 207 (227)
T ss_pred CCeEEEEeeccc
Confidence 888877765543
No 130
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.95 E-value=2.3e-09 Score=89.74 Aligned_cols=98 Identities=22% Similarity=0.244 Sum_probs=74.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCC---Cc-ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSI---HV-VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~---p~-~D~v 128 (244)
+++.+||+||||+|.++..+++..+..+ ++++|+ +.+++.+++. ++++++.+|.++.+ +. .|+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~-v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEK-ATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcce-EEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 4456999999999999999987655556 999999 8998887752 57888888876532 22 4999
Q ss_pred EeccccccCCHHH--HHHHHHHHHHHcCCCCEEEEe
Q 041308 129 FMKWVLTTWTDDE--CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 129 ~~~~~lh~~~~~~--~~~~l~~~~~~L~pgG~lii~ 162 (244)
++...-..-+... ...+++++++.|+|||.+++.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9865532222221 357889999999999999985
No 131
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.95 E-value=6e-09 Score=92.79 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=82.8
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC---CCc--
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS---IHV-- 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~---~p~-- 124 (244)
++..++ ..++.+|||+|||+|..+..+++..++.+ ++++|. +.+++.++++ .+++++.+|+.+. .+.
T Consensus 236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQ-VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 444555 56678999999999999999999987778 999999 9999888754 2478899998764 222
Q ss_pred ceEEEeccc------cc-------cCCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 125 VDAIFMKWV------LT-------TWTDDE-------CKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 125 ~D~v~~~~~------lh-------~~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
.|.|++.-- +. ....++ ..++|+++.+.|||||++++..+.....
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 378 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE 378 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 599984321 11 112211 2478999999999999999988765543
No 132
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.94 E-value=1.5e-09 Score=87.23 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=76.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~ 124 (244)
...+++.++ +++..+|||||||+|.++.-++... +..+ ++.+|. +.+.+.|+++ .++.++.+|....++.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~-Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGR-VVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEE-EEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccce-EEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 345777777 8899999999999999999999875 3446 889999 9999888864 6899999998777655
Q ss_pred ---ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 ---VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 ---~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|.|++.......+. .+.+.|++||++++.-.
T Consensus 139 ~apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp G-SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred CCCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 399999887765443 35567899999998543
No 133
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.92 E-value=4.7e-09 Score=93.48 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=82.8
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C-CeeEEeCCCCCC-C--C
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P-EVTHIGGDMFKS-I--H 123 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~-~i~~~~gd~~~~-~--p 123 (244)
.++..++ ..++.+|||+|||+|..+..+++..+..+ ++++|. +.+++.++++ . ++.+..+|..+. . +
T Consensus 229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~-v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 229 WVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQ-VVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCe-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence 3455555 56678999999999999999999887678 999999 9998887753 1 233466776543 1 2
Q ss_pred c--ceEEEec------cccccCCH-------H-------HHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 124 V--VDAIFMK------WVLTTWTD-------D-------ECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 124 ~--~D~v~~~------~~lh~~~~-------~-------~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
. .|.|++. .++++.++ + ...++|+++.+.|||||+++...+.....
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~ 374 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE 374 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 2 4998852 34554433 1 13579999999999999999999877654
No 134
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.92 E-value=9.8e-09 Score=83.59 Aligned_cols=139 Identities=14% Similarity=0.044 Sum_probs=91.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCC-cceEEEeccccccCCHHHH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIH-VVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p-~~D~v~~~~~lh~~~~~~~ 142 (244)
...++||||+|.|..+..++..+.+ +.+-+. +.|....++ ..++++..|-....+ ..|+|.|-++|....++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P-- 167 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP-- 167 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--
Confidence 3578999999999999999977766 555577 777665554 455555543333323 25999999999876665
Q ss_pred HHHHHHHHHHcCCCCEEEEecccCC-----CCC--CchHHhhhhhcccHhhhhhhccCceec--CHHHHHHHHHhCCCCe
Q 041308 143 KLIMENYYKALLAGRKLIACEPVLP-----DDS--NESQRTRALLEGDIFVMTIYRAKGKHK--TEQEFKQLGFSTGFPH 213 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii~d~~~~-----~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~ 213 (244)
..+|+.++++|+|+|++++.=-..- ... ..++.+ .++ .. |..+ ....+-+.|+.+||++
T Consensus 168 ~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e----~l~-------~~-g~~~E~~v~~l~~v~~p~GF~v 235 (265)
T PF05219_consen 168 LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE----LLP-------VK-GATFEEQVSSLVNVFEPAGFEV 235 (265)
T ss_pred HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh----hcC-------CC-CCcHHHHHHHHHHHHHhcCCEE
Confidence 5899999999999999987532111 100 001110 111 11 1111 1234448999999999
Q ss_pred EEEEEccc
Q 041308 214 LRAFISII 221 (244)
Q Consensus 214 ~~~~~~~~ 221 (244)
......+.
T Consensus 236 ~~~tr~PY 243 (265)
T PF05219_consen 236 ERWTRLPY 243 (265)
T ss_pred EEEeccCc
Confidence 99877653
No 135
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.92 E-value=4.8e-09 Score=81.70 Aligned_cols=103 Identities=11% Similarity=0.152 Sum_probs=73.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc--c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV--V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~--~ 125 (244)
+.+++.++ +.+..++||+|||+|.++..++++ ..+ ++++|. +.+++.++++ ++++++.+|+.+. .+. .
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~-v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AAR-VTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCe-EEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 45677776 777789999999999999999987 356 999999 8898887753 5799999999875 444 4
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
|.|+++...| ...+...+++++.. +.++|.+++..
T Consensus 79 d~vi~n~Py~-~~~~~i~~~l~~~~--~~~~~~l~~q~ 113 (169)
T smart00650 79 YKVVGNLPYN-ISTPILFKLLEEPP--AFRDAVLMVQK 113 (169)
T ss_pred CEEEECCCcc-cHHHHHHHHHhcCC--CcceEEEEEEH
Confidence 8887765544 44443333433221 34667776643
No 136
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=8.9e-09 Score=92.15 Aligned_cols=110 Identities=16% Similarity=0.086 Sum_probs=80.8
Q ss_pred ccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceE
Q 041308 58 DGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDA 127 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~ 127 (244)
..++ ..++.+|||+|||+|..+..+++... ..+ ++++|. +.+++.++++ .+++++.+|+.+..+. .|+
T Consensus 244 ~~l~-~~~g~~VLDlgaG~G~kt~~la~~~~~~~~-V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~ 321 (445)
T PRK14904 244 LLLN-PQPGSTVLDLCAAPGGKSTFMAELMQNRGQ-ITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDA 321 (445)
T ss_pred HhcC-CCCCCEEEEECCCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCE
Confidence 3444 45668999999999999999888654 456 999999 9999888753 4689999998764333 599
Q ss_pred EEecc------cc-------ccCCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 128 IFMKW------VL-------TTWTDDE-------CKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 128 v~~~~------~l-------h~~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
|++-- ++ .++++++ ..++|+++.+.|||||+++...+.....
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~ 383 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE 383 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 88521 11 1223222 2468999999999999999988776544
No 137
>PLN02672 methionine S-methyltransferase
Probab=98.90 E-value=1.2e-08 Score=98.55 Aligned_cols=94 Identities=16% Similarity=0.046 Sum_probs=72.0
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------------------CCeeEEeCCCCCCCC
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------------------PEVTHIGGDMFKSIH 123 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------------------~~i~~~~gd~~~~~p 123 (244)
.+|||+|||+|.+++.+++.+|..+ ++++|+ +.+++.|+++ +|++++.+|+++.++
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~-v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSK-VYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 5899999999999999999999888 999999 9999888532 379999999988753
Q ss_pred c----ceEEEecccc------ccCCH------------------------------HHHHHHHHHHHHHcCCCCEEEE
Q 041308 124 V----VDAIFMKWVL------TTWTD------------------------------DECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 124 ~----~D~v~~~~~l------h~~~~------------------------------~~~~~~l~~~~~~L~pgG~lii 161 (244)
. .|+|+++--- ..++. +-..++++++.+.|+|||.+++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 2 4988876321 00000 0125678888889999998774
No 138
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.89 E-value=8.1e-09 Score=92.14 Aligned_cols=113 Identities=15% Similarity=0.069 Sum_probs=83.6
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCC---C
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSI---H 123 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~---p 123 (244)
.++..++ ..++.+|||+|||+|..+..+++... ..+ ++++|. +.+++.++++ .+++++.+|..+.. +
T Consensus 243 l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~ 320 (434)
T PRK14901 243 LVAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGE-IWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP 320 (434)
T ss_pred HHHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc
Confidence 3444555 56678999999999999999998754 457 999999 8898887753 56899999986532 1
Q ss_pred ----cceEEEec------cccccCCH-------HH-------HHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 124 ----VVDAIFMK------WVLTTWTD-------DE-------CKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 124 ----~~D~v~~~------~~lh~~~~-------~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
..|.|++. .++++-++ ++ ..++|+++.+.|||||+++...+.+...
T Consensus 321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~ 390 (434)
T PRK14901 321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA 390 (434)
T ss_pred cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 24999863 23443332 11 2588999999999999999988765543
No 139
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.89 E-value=1.3e-08 Score=91.08 Aligned_cols=111 Identities=16% Similarity=0.088 Sum_probs=81.2
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~ 124 (244)
+...++ .+++.+|||+|||+|..+..+++.. +..+ ++++|+ +.+++.++++ .+++++.+|+.+. ++.
T Consensus 242 v~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 242 VAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGK-VVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcc
Confidence 444555 5667899999999999999999876 5677 999999 9888877653 4689999998764 333
Q ss_pred -ceEEEecccc------cc-------CCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 125 -VDAIFMKWVL------TT-------WTDDE-------CKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 125 -~D~v~~~~~l------h~-------~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
.|+|++.--. .+ .+..+ ...+|+++.+.|||||+++...+....
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 5999864221 11 11111 246899999999999999987665443
No 140
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.86 E-value=1.2e-08 Score=83.69 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=75.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC---------c
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---------V 124 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---------~ 124 (244)
..+..+|||+|||+|..+..++...+ +.+ ++.+|. +.+++.|+++ ++++++.||+.+.++ .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~-v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGR-ITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 45678999999999999999988765 567 999999 8888888763 689999999976421 2
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.|+|++-. ..+.-...+..+.+.|+|||.+++-+..
T Consensus 145 fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 145 FDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 49987642 2244567899999999999987764443
No 141
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.86 E-value=6.8e-08 Score=78.18 Aligned_cols=144 Identities=15% Similarity=0.084 Sum_probs=95.9
Q ss_pred cccCchHHH----HHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCC
Q 041308 31 YGKKPKMNG----LMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAP 106 (244)
Q Consensus 31 ~~~~~~~~~----~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~ 106 (244)
...+|+.-+ .|+..+..+...-.+.+++.+..-+....|-|+|||.+.++. . -..+ +..+|+-.+
T Consensus 142 fkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~----~-~~~k-V~SfDL~a~----- 210 (325)
T KOG3045|consen 142 FKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS----S-ERHK-VHSFDLVAV----- 210 (325)
T ss_pred HhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh----c-cccc-eeeeeeecC-----
Confidence 334444444 445555555555567777777634556799999999998876 1 1224 888897322
Q ss_pred CCCCeeEEeCCCCC-CCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhccc
Q 041308 107 SIPEVTHIGGDMFK-SIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGD 183 (244)
Q Consensus 107 ~~~~i~~~~gd~~~-~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d 183 (244)
++ .++..|+.+ |++. .|+++++..|.. .+...++++++|+|+|||.++|.|...
T Consensus 211 -~~--~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~S----------------- 267 (325)
T KOG3045|consen 211 -NE--RVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKS----------------- 267 (325)
T ss_pred -CC--ceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhh-----------------
Confidence 23 445567766 3554 399998888754 334689999999999999999988621
Q ss_pred HhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 184 IFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 184 ~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
+.-+...+.+.+...||.+......
T Consensus 268 -----------Rf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 268 -----------RFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred -----------hcccHHHHHHHHHHcCCeeeehhhh
Confidence 1122445778889999998876443
No 142
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=2.7e-08 Score=80.65 Aligned_cols=124 Identities=18% Similarity=0.210 Sum_probs=96.3
Q ss_pred CchHHHHHHHHHHcccccc----hHHHhccCCCCCCcceEEEEcCCccHHHHHHHH-HcCCCCeEEEeec-hHHHHhCCC
Q 041308 34 KPKMNGLMRKAMSRVFVPF----MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQ-KHCFICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 34 ~~~~~~~f~~~~~~~~~~~----~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~-~~p~~~~~~~~D~-~~~i~~a~~ 107 (244)
.|...+.+.. |.+..+.+ +..++.... .+++.+|+|.|.|+|.++..|+. ..|..+ ++.+|. ++..+.|++
T Consensus 61 ~p~~~d~~~~-~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~-v~tyE~r~d~~k~A~~ 137 (256)
T COG2519 61 KPTPEDYLLS-MKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGH-VTTYEIREDFAKTARE 137 (256)
T ss_pred CCCHHHHHHh-CcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCce-EEEEEecHHHHHHHHH
Confidence 3455555555 66666544 334667776 89999999999999999999997 457788 999999 999999987
Q ss_pred C-------CCeeEEeCCCCCC-CCc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 108 I-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 108 ~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
+ +++++..+|..+. .+. .|+|++- ++++. ..+.++.++|+|||.+++.-++.+
T Consensus 138 Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LD-----mp~PW--~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 138 NLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLD-----LPDPW--NVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred HHHHhccccceEEEeccccccccccccCEEEEc-----CCChH--HHHHHHHHHhCCCcEEEEEcCCHH
Confidence 5 5699999999887 333 4888854 55553 789999999999999999776543
No 143
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.83 E-value=1.9e-08 Score=86.27 Aligned_cols=96 Identities=17% Similarity=0.238 Sum_probs=70.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------------CCeeEEeCCCCCC-----C
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------------PEVTHIGGDMFKS-----I 122 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------------~~i~~~~gd~~~~-----~ 122 (244)
+..+|||+|||.|.=+.--.+.. ++..+++|+ +..|+.|+++ -...|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 67899999999888666665543 333899999 8788777642 1357788998754 2
Q ss_pred C-c---ceEEEecccccc-CC-HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 123 H-V---VDAIFMKWVLTT-WT-DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 123 p-~---~D~v~~~~~lh~-~~-~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+ . .|+|-+.+.+|+ +. .+.+..+|+++.+.|+|||+++..
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2 2 399999999998 44 556777999999999999999875
No 144
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.82 E-value=6e-09 Score=82.94 Aligned_cols=92 Identities=21% Similarity=0.266 Sum_probs=68.8
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------CCCeeEEeCCCCCC----CCcc--eEEEeccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------IPEVTHIGGDMFKS----IHVV--DAIFMKWV 133 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------~~~i~~~~gd~~~~----~p~~--D~v~~~~~ 133 (244)
.-+||||||.|.++..+++.+|+.. ++|+|+ ...+..+.+ ..++.++.+|+..- ++.+ |-|.+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n-~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~-- 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDIN-FIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN-- 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSE-EEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCC-EEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe--
Confidence 4889999999999999999999999 999999 766665543 38999999999773 3432 655544
Q ss_pred cccCCHHH-----------HHHHHHHHHHHcCCCCEEEEecc
Q 041308 134 LTTWTDDE-----------CKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 134 lh~~~~~~-----------~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+||+- ...+++.++++|+|||.|.+...
T Consensus 96 ---FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 96 ---FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred ---CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 23221 13689999999999999998653
No 145
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.81 E-value=1.9e-07 Score=77.53 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=81.2
Q ss_pred CcceEEEEcCCccH----HHHHHHHHcC-----CCCeEEEeec-hHHHHhCCCC--------------------------
Q 041308 65 GVKRLVDVGGSAGD----CLRIILQKHC-----FICEGINFDL-PEVVAKAPSI-------------------------- 108 (244)
Q Consensus 65 ~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~~D~-~~~i~~a~~~-------------------------- 108 (244)
+.-+|.-.||+||. +|..+.+..| .++ +++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~-I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVK-ILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceE-EEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 36799999999997 3444455554 466 899999 9999998851
Q ss_pred ---------CCeeEEeCCCCCCC--Cc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 109 ---------PEVTHIGGDMFKSI--HV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 109 ---------~~i~~~~gd~~~~~--p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..|.|...|++++. +. .|+|+|++||-.++.+...+++++++..|+|||.|++-..
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 34889999998873 23 4999999999999999999999999999999999999543
No 146
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.79 E-value=8.7e-09 Score=81.45 Aligned_cols=107 Identities=16% Similarity=0.184 Sum_probs=76.0
Q ss_pred chHHHhccCCCCCC--cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCCCc---
Q 041308 52 FMTSVLDGYDGFKG--VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSIHV--- 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~p~--- 124 (244)
..+.-++.++ +++ ..-|||||||+|..+..+.+.. .. .+++|+ |.|++.|.+. -.-.++.+|+-+.+|.
T Consensus 36 m~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~G--h~-wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpG 111 (270)
T KOG1541|consen 36 MAERALELLA-LPGPKSGLILDIGCGSGLSGSVLSDSG--HQ-WIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPG 111 (270)
T ss_pred HHHHHHHHhh-CCCCCCcEEEEeccCCCcchheeccCC--ce-EEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCC
Confidence 3444455555 444 6899999999999998888654 34 899999 9999999863 1246777888776553
Q ss_pred -ceEEEecccc----c-----cCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 -VDAIFMKWVL----T-----TWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 -~D~v~~~~~l----h-----~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|.+++...+ | |.+......++..++.+|++|++.++.
T Consensus 112 tFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 112 TFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred ccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 3877754443 2 223344556788899999999999874
No 147
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.78 E-value=1.1e-08 Score=85.15 Aligned_cols=104 Identities=20% Similarity=0.299 Sum_probs=79.1
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------C----CeeEEeCCCCCC
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------P----EVTHIGGDMFKS 121 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~----~i~~~~gd~~~~ 121 (244)
.|+..| .++...++|+|||.|.=++.--+.. +.+.+++|+ .-.|+.|+++ . ...|+++|.+..
T Consensus 109 ~LI~~y--~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 109 VLINLY--TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHH--hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 355555 3677899999999998777666554 333899999 7677777753 1 368899999754
Q ss_pred -----C----CcceEEEecccccc-CC-HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 122 -----I----HVVDAIFMKWVLTT-WT-DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 122 -----~----p~~D~v~~~~~lh~-~~-~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+ |..|+|-+.+++|. |. .+++.-+|+|+.+.|+|||.+|-.
T Consensus 185 ~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 185 RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 3 12599999999997 44 556788899999999999999863
No 148
>PHA03412 putative methyltransferase; Provisional
Probab=98.78 E-value=3.4e-08 Score=79.94 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=71.7
Q ss_pred cceEEEEcCCccHHHHHHHHHc---CCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc-ceEEEeccccccCC
Q 041308 66 VKRLVDVGGSAGDCLRIILQKH---CFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWT 138 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~ 138 (244)
..+|||+|||+|.++..++++. +..+ ++++|+ +.+++.|+++ +++.++.+|+... +.. .|+|+++--.+-..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~-V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPRE-IVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcE-EEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 5799999999999999999874 3567 999999 9999999876 6789999999764 332 59999886665322
Q ss_pred H----------HHHHHHHHHHHHHcCCCCEEEE
Q 041308 139 D----------DECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 139 ~----------~~~~~~l~~~~~~L~pgG~lii 161 (244)
. .-...+++++.+.++||+ +++
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 1 123458889998666655 454
No 149
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.77 E-value=3.9e-08 Score=82.12 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=78.9
Q ss_pred cCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCcceE
Q 041308 59 GYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHVVDA 127 (244)
Q Consensus 59 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~~D~ 127 (244)
.++ .+++.+|||+|||+|..+..+++... ..+ ++++|. +.+++.++++ .++++..+|.... .+..|.
T Consensus 66 ~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 66 ALE-PDPPERVLDMAAAPGGKTTQISALMKNEGA-IVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred HhC-CCCcCEEEEECCCchHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCE
Confidence 344 56678999999999999999998764 356 999999 9888877653 5688888887542 223698
Q ss_pred EEecc------ccc-------cCCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 128 IFMKW------VLT-------TWTDDE-------CKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 128 v~~~~------~lh-------~~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
|++.- ++. .+++++ ..++|+++.+.|||||+++...+.....
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~ 205 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE 205 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH
Confidence 88632 111 122221 2469999999999999999887765543
No 150
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=4.7e-08 Score=87.06 Aligned_cols=112 Identities=15% Similarity=0.066 Sum_probs=81.5
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~ 124 (244)
+...++ ..++.+|||+|||+|..+.++++.. +..+ ++++|+ +.+++.++++ .++++..+|..+. .+.
T Consensus 229 ~~~~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~-V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~ 306 (431)
T PRK14903 229 VPLLME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGK-ILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQD 306 (431)
T ss_pred HHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhc
Confidence 444455 5677899999999999999999875 4567 999999 9999888753 4688999998643 122
Q ss_pred -ceEEEecc---ccccC----------CHH-------HHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 125 -VDAIFMKW---VLTTW----------TDD-------ECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 125 -~D~v~~~~---~lh~~----------~~~-------~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
.|.|++.- .+..+ +.+ ...++|.++.+.|||||+++...+.+...
T Consensus 307 ~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e 372 (431)
T PRK14903 307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE 372 (431)
T ss_pred cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh
Confidence 49988621 11111 111 12578999999999999999888876544
No 151
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.72 E-value=4.2e-08 Score=78.51 Aligned_cols=112 Identities=19% Similarity=0.334 Sum_probs=69.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC---------------CCCeeEEeC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS---------------IPEVTHIGG 116 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~---------------~~~i~~~~g 116 (244)
+..+++.+. +.+...++|+|||.|......+-..+ +++++|+++ +...+.|+. ..++++..+
T Consensus 31 ~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 31 VSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 344667776 78889999999999999888886664 444899998 665554432 257889999
Q ss_pred CCCCC------CCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 117 DMFKS------IHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 117 d~~~~------~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
|+.+. +..+|+|++++.+ |+++-. ..|++....||||.+++......+..
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~-~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTC--FDPDLN-LALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TT--T-HHHH-HHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred CccccHhHhhhhcCCCEEEEeccc--cCHHHH-HHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 99875 2347999999886 666654 44577888899999988766655543
No 152
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.71 E-value=5.6e-08 Score=79.80 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=91.4
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p 123 (244)
..++-.++ +.++.+|||.|.|+|.++..|++. .|..+ +.-+|. ++..+.|+++ .++++..+|..+. ++
T Consensus 30 ~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~-v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 30 SYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGH-VYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeE-EEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 34777787 899999999999999999999975 57888 999999 8888888863 6899999998654 42
Q ss_pred -----cceEEEeccccccCCHHHHHHHHHHHHHHc-CCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceec
Q 041308 124 -----VVDAIFMKWVLTTWTDDECKLIMENYYKAL-LAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHK 197 (244)
Q Consensus 124 -----~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L-~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 197 (244)
..|+|++- ++++. ..+.++.++| +|||++++.-+++.+
T Consensus 108 ~~~~~~~DavfLD-----lp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQ----------------------------- 151 (247)
T PF08704_consen 108 EELESDFDAVFLD-----LPDPW--EAIPHAKRALKKPGGRICCFSPCIEQ----------------------------- 151 (247)
T ss_dssp TT-TTSEEEEEEE-----SSSGG--GGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------
T ss_pred ccccCcccEEEEe-----CCCHH--HHHHHHHHHHhcCCceEEEECCCHHH-----------------------------
Confidence 24988864 45443 6789999999 899999997653321
Q ss_pred CHHHHHHHHHhCCCCeEEEEEcc
Q 041308 198 TEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 198 t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.....+.|++.||..+++..+.
T Consensus 152 -v~~~~~~L~~~gf~~i~~~Evl 173 (247)
T PF08704_consen 152 -VQKTVEALREHGFTDIETVEVL 173 (247)
T ss_dssp -HHHHHHHHHHTTEEEEEEEEEE
T ss_pred -HHHHHHHHHHCCCeeeEEEEEE
Confidence 1223455677899888765553
No 153
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.70 E-value=1.1e-07 Score=72.15 Aligned_cols=112 Identities=19% Similarity=0.232 Sum_probs=93.0
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCC-CCCeeEEeCCCCCC---CC--
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPS-IPEVTHIGGDMFKS---IH-- 123 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~-~~~i~~~~gd~~~~---~p-- 123 (244)
.++.++...+ +..+.-||++|.|||.++.+++++.- .-. .+.++. ++......+ .+.++++.||.+.. +.
T Consensus 36 lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~-L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~ 113 (194)
T COG3963 36 LARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPES-LTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEH 113 (194)
T ss_pred HHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccc-eEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhc
Confidence 4666777787 88889999999999999999998864 344 788887 877777665 48888999998754 22
Q ss_pred ---cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 124 ---VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 124 ---~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
..|.|++..-+-.++.....++|+.+...|++||.++-....
T Consensus 114 ~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 114 KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 249999999999999999999999999999999999987764
No 154
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.66 E-value=8.3e-08 Score=85.94 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=70.7
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCC--
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSI-- 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~-- 122 (244)
+.+.+++.++ ..+..+|||+|||+|.++..+++.. .+ ++++|. +.+++.|+++ .+++++.+|+.+.+
T Consensus 285 l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~-V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 285 MVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AE-VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh
Confidence 3444555554 5566899999999999999999875 46 999999 9999988863 57999999986532
Q ss_pred ---Cc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 123 ---HV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 123 ---p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+. .|+|++.---.. ...+++.+.+ ++|++.+++
T Consensus 361 ~~~~~~~fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred hhhhcCCCCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEE
Confidence 12 499887533222 1234455544 688777666
No 155
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.65 E-value=1.5e-07 Score=78.83 Aligned_cols=92 Identities=18% Similarity=0.110 Sum_probs=74.3
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEeccccccC
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTTW 137 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~ 137 (244)
.-|||||||+|.++...++.+. -+ +..++..+|.+.|++. +||.++.|-+.+- +|+ .|++++.-+=..+
T Consensus 179 kiVlDVGaGSGILS~FAaqAGA-~~-vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQAGA-KK-VYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred cEEEEecCCccHHHHHHHHhCc-ce-EEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 7899999999999888777653 35 8999999999998862 8999999999774 888 5999977665555
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEE
Q 041308 138 TDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~li 160 (244)
-.+....-.-.+++.|+|.|+.+
T Consensus 257 ~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhHHHHHHHHHHHhhcCCCCccc
Confidence 56666666667889999998875
No 156
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.64 E-value=1.6e-07 Score=78.76 Aligned_cols=114 Identities=16% Similarity=0.269 Sum_probs=81.3
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeE--EeCCCCC---C
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTH--IGGDMFK---S 121 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~--~~gd~~~---~ 121 (244)
++.++....+.|. +.+|||+|+|+|.-+.++...++....++++|. +.|++.++.. ..... ...++.. +
T Consensus 21 vl~El~~r~p~f~-P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 21 VLSELRKRLPDFR-PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHhCcCCC-CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 3445555555344 479999999999999888888886655899999 8888877642 11110 1111211 1
Q ss_pred CCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 122 IHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 122 ~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
++..|+|++.++|-.+++++...+++++.+.+++ .|+|+|...+.
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 3335999999999999998888899999888766 99999975443
No 157
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.61 E-value=3.1e-07 Score=73.40 Aligned_cols=132 Identities=17% Similarity=0.132 Sum_probs=89.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCC---CCc--ceEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKS---IHV--VDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~---~p~--~D~v 128 (244)
.+...+|||.+.|-|.+++..+++.. .+ ++-++- |.+++.|+-+ .+|+++.||+.+- +++ .|+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~-VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IH-VITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cE-EEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 35678999999999999999998864 35 777777 9999988865 4689999998764 554 3887
Q ss_pred Eeccc-cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHH
Q 041308 129 FMKWV-LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGF 207 (244)
Q Consensus 129 ~~~~~-lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~ 207 (244)
+---- +-+-..--...+.++++|+|||||+++=.-...... .+-.| -...+.+.|+
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---------yrG~d--------------~~~gVa~RLr 266 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---------YRGLD--------------LPKGVAERLR 266 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------cccCC--------------hhHHHHHHHH
Confidence 72100 000001123578999999999999997433211111 01112 1456788999
Q ss_pred hCCCCeEEEEEc
Q 041308 208 STGFPHLRAFIS 219 (244)
Q Consensus 208 ~aGf~~~~~~~~ 219 (244)
++||.+++...-
T Consensus 267 ~vGF~~v~~~~~ 278 (287)
T COG2521 267 RVGFEVVKKVRE 278 (287)
T ss_pred hcCceeeeeehh
Confidence 999998776443
No 158
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.61 E-value=2e-07 Score=77.33 Aligned_cols=90 Identities=9% Similarity=0.190 Sum_probs=65.0
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCcce
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHVVD 126 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~~D 126 (244)
.+.+++..+ ..+..+|||+|||+|.++..++++.+ + ++++|. +.+++.+++. ++++++.+|+.+. ++..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK--K-VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC--c-EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 455666666 67779999999999999999999875 4 888998 8888877653 6899999999875 44444
Q ss_pred ---EEEeccccccCCHHHHHHHHHHHHH
Q 041308 127 ---AIFMKWVLTTWTDDECKLIMENYYK 151 (244)
Q Consensus 127 ---~v~~~~~lh~~~~~~~~~~l~~~~~ 151 (244)
+|+.+ .-+|++. .++.++..
T Consensus 94 ~~~~vvsN-lPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 94 KQLKVVSN-LPYNISS----PLIFKLLE 116 (253)
T ss_pred CcceEEEc-CChhhHH----HHHHHHhc
Confidence 45443 3334443 44555544
No 159
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.60 E-value=1.9e-07 Score=77.72 Aligned_cols=84 Identities=11% Similarity=0.149 Sum_probs=65.2
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCcc
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHVV 125 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~~ 125 (244)
+++.+++.++ ..+..+|||||||+|.++..++++. .+ ++++|+ +.+++.+++. ++++++.+|+.+. ++..
T Consensus 17 ~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~-v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~ 92 (258)
T PRK14896 17 VVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KK-VYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEF 92 (258)
T ss_pred HHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhc
Confidence 3455666665 6677899999999999999999884 46 999999 8898887753 6799999999874 6666
Q ss_pred eEEEeccccccCCHH
Q 041308 126 DAIFMKWVLTTWTDD 140 (244)
Q Consensus 126 D~v~~~~~lh~~~~~ 140 (244)
|.|+++.-. +++.+
T Consensus 93 d~Vv~NlPy-~i~s~ 106 (258)
T PRK14896 93 NKVVSNLPY-QISSP 106 (258)
T ss_pred eEEEEcCCc-ccCcH
Confidence 888876654 44433
No 160
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.60 E-value=5.9e-08 Score=79.89 Aligned_cols=149 Identities=15% Similarity=0.070 Sum_probs=85.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------------------C------------C
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------------------I------------P 109 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------------------~------------~ 109 (244)
.+.++||||||+-.+- ++...+..+.++..|. +.-.+..++ . .
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4579999999986552 2222233333666675 433321110 0 1
Q ss_pred Ce-eEEeCCCCCC--C------Cc-ceEEEeccccccCC--HHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhh
Q 041308 110 EV-THIGGDMFKS--I------HV-VDAIFMKWVLTTWT--DDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTR 177 (244)
Q Consensus 110 ~i-~~~~gd~~~~--~------p~-~D~v~~~~~lh~~~--~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~ 177 (244)
.| .++..|.+++ + |. +|+|++.++|.... .++-.+.++++.++|||||.|+++...-... +..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~-----Y~v 208 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY-----YMV 208 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE-----EEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee-----EEE
Confidence 23 3666787764 2 33 69999999997644 5567789999999999999999987632211 100
Q ss_pred hhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc-c----ceeEEEeecC
Q 041308 178 ALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS-I----IFTLFLSSKS 230 (244)
Q Consensus 178 ~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~----~~~~~~~~~~ 230 (244)
... .......+.+.+++.++++||.+.+.+.. . -...+++|+|
T Consensus 209 G~~----------~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 209 GGH----------KFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp TTE----------EEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred CCE----------ecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 000 11122347899999999999999998741 0 1345666654
No 161
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.58 E-value=7.6e-08 Score=85.75 Aligned_cols=126 Identities=20% Similarity=0.194 Sum_probs=81.4
Q ss_pred cccccccCchHHHHHHHHHHcccccchHHHhccCCCC---CCcceEEEEcCCccHHHHHHHHHc----CCCCeEEEeec-
Q 041308 27 AYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGF---KGVKRLVDVGGSAGDCLRIILQKH----CFICEGINFDL- 98 (244)
Q Consensus 27 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~---~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~~D~- 98 (244)
.||..++|+...+.|.+|+.. .+.+....- .....|||||||+|-++...++.. ...+ +++++.
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~-VyAVEkn 223 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVK-VYAVEKN 223 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESE-EEEEESS
T ss_pred cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeE-EEEEcCC
Confidence 377888999888889988753 222222201 124689999999999987776653 3456 999997
Q ss_pred hHHHHhCC----C---CCCeeEEeCCCCCC-CCc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 99 PEVVAKAP----S---IPEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 99 ~~~i~~a~----~---~~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
+..+...+ + .++|+++.+|+.+- +|+ +|+||+..+=.....+-....|....|.|||||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 65443322 1 28899999999875 665 699998766432223334566888889999997765
No 162
>PLN02823 spermine synthase
Probab=98.58 E-value=1.5e-07 Score=80.81 Aligned_cols=96 Identities=19% Similarity=0.137 Sum_probs=72.1
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCCC---c-ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSIH---V-VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~p---~-~D~v 128 (244)
+++.+||.||+|.|..++.+++..+..+ ++.+|+ +.+++.+++. +|++++.+|.++.+. . .|+|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~-v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEK-VVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 3568999999999999999997655556 999999 9999999852 689999999876532 2 4999
Q ss_pred EeccccccCC---HH--HHHHHHH-HHHHHcCCCCEEEE
Q 041308 129 FMKWVLTTWT---DD--ECKLIME-NYYKALLAGRKLIA 161 (244)
Q Consensus 129 ~~~~~lh~~~---~~--~~~~~l~-~~~~~L~pgG~lii 161 (244)
++-.. .-.. .. -...+++ .+.+.|+|||.+++
T Consensus 181 i~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 181 IGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred EecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 97631 1110 00 0236777 89999999999876
No 163
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.57 E-value=2.9e-07 Score=86.78 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=72.2
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCC---C-cceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSI---H-VVDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~---p-~~D~v~~~ 131 (244)
.+.+|||+|||||.++..+++.. ..+ ++++|. +.+++.++++ .+++++.+|.++.+ + ..|+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~-V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKS-TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCE-EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 45899999999999999999863 336 999999 9999988863 37999999987643 2 25999985
Q ss_pred cccc-------c-CC-HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 132 WVLT-------T-WT-DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 132 ~~lh-------~-~~-~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
---. . +. ...-..+++.+.+.|+|||.+++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 2210 0 00 122356889999999999998874
No 164
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.57 E-value=1.3e-07 Score=75.48 Aligned_cols=95 Identities=7% Similarity=-0.045 Sum_probs=66.8
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC----cceEEEecc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH----VVDAIFMKW 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p----~~D~v~~~~ 132 (244)
.+..++||+|||+|.++..++.+.. .+ ++++|. +..++.++++ .+++++.+|+++.++ ..|+|++.-
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a-~~-V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP 129 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYA-AG-ATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP 129 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC
Confidence 3457999999999999998766653 46 999999 8888777653 578999999876432 259999887
Q ss_pred ccccCCHHHHHHHHHHHHH--HcCCCCEEEEec
Q 041308 133 VLTTWTDDECKLIMENYYK--ALLAGRKLIACE 163 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~--~L~pgG~lii~d 163 (244)
-.+.--. ..+++.+.+ .|+|++.+++-.
T Consensus 130 Py~~g~~---~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 130 PFRKGLL---EETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CCCCChH---HHHHHHHHHCCCcCCCcEEEEEe
Confidence 7433112 234444443 378888777643
No 165
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.56 E-value=1.7e-07 Score=76.10 Aligned_cols=96 Identities=18% Similarity=0.148 Sum_probs=70.0
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC----CCcc--eEEEeccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS----IHVV--DAIFMKWV 133 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~----~p~~--D~v~~~~~ 133 (244)
.-+||||||.|.+...+++++|+.. ++|+++ ...+..+-+. .++.++++|+.+- .+.+ |-|.+.+-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~n-fiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKN-FLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCC-EEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5799999999999999999999999 999998 6555554431 4899999998653 3332 55554432
Q ss_pred c------ccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 134 L------TTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 134 l------h~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
= ||=..=-...+++.+.+.|+|||.|.+..
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 2 21000011368999999999999999964
No 166
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.56 E-value=2.3e-07 Score=77.85 Aligned_cols=82 Identities=12% Similarity=0.197 Sum_probs=62.7
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCcc--
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHVV-- 125 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~~-- 125 (244)
++.+++.++ ..+..+|||+|||+|.++..++++.+ + ++++|. +.|++.+++. ++++++.+|+.+. ++..
T Consensus 31 ~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 31 LDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--K-VTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--c-EEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCc
Confidence 445666666 67778999999999999999999875 6 999999 9999988764 6899999999764 4432
Q ss_pred eEEEeccccccCCH
Q 041308 126 DAIFMKWVLTTWTD 139 (244)
Q Consensus 126 D~v~~~~~lh~~~~ 139 (244)
|.|+.+.- ++.+.
T Consensus 107 ~~vv~NlP-Y~iss 119 (272)
T PRK00274 107 LKVVANLP-YNITT 119 (272)
T ss_pred ceEEEeCC-ccchH
Confidence 66665543 33443
No 167
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.55 E-value=5.4e-07 Score=76.79 Aligned_cols=145 Identities=13% Similarity=0.085 Sum_probs=92.3
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEe----CCCCCCC--Cc--ceE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIG----GDMFKSI--HV--VDA 127 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~----gd~~~~~--p~--~D~ 127 (244)
...++||||||+|.....++.+.++.+ ++++|+ +..++.|+++ .+|++.. .++++.+ +. .|+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~-~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWR-FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 457999999999999888888888899 999999 9999988853 3677653 2334432 22 499
Q ss_pred EEeccccccCCHHH---HHHHHHHHH----------------HHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhh
Q 041308 128 IFMKWVLTTWTDDE---CKLIMENYY----------------KALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMT 188 (244)
Q Consensus 128 v~~~~~lh~~~~~~---~~~~l~~~~----------------~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~ 188 (244)
|+++--+|.-..+. ...-.++.. +.+.+||.+-++.....+. ...... .....
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS---~~~~~~-~gwft---- 264 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES---KAFAKQ-VLWFT---- 264 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH---HHHHhh-CcEEE----
Confidence 99998887543331 111222222 3344667766655544332 100000 00011
Q ss_pred hhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 189 IYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 189 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
..=++.-+.+.+.+.|++.|...+.+..+.
T Consensus 265 --smv~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 265 --SLVSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred --EEeeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 111444588999999999999888887764
No 168
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.53 E-value=1.6e-06 Score=69.00 Aligned_cols=126 Identities=19% Similarity=0.208 Sum_probs=92.6
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCC-CCCc-----ceEEEeccccccCC-
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK-SIHV-----VDAIFMKWVLTTWT- 138 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~-~~p~-----~D~v~~~~~lh~~~- 138 (244)
..++|||||=+..+... ..+-+. ++.+|+.. +.+ .+...||++ ++|. .|+|.++.||..++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fd-vt~IDLns------~~~--~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFD-VTRIDLNS------QHP--GILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred cceEEeecccCCCCccc---ccCcee-eEEeecCC------CCC--CceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 36999999886654443 235567 89999832 123 345678887 4663 49999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCE-----EEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 139 DDECKLIMENYYKALLAGRK-----LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~-----lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
+.++-.+++++++.|+|+|. ++++-+. . ...+++..+.+.|.++++.-||..
T Consensus 120 p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~---~--------------------Cv~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL---P--------------------CVTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHHhCCCCccCcceEEEEeCc---h--------------------HhhcccccCHHHHHHHHHhCCcEE
Confidence 55677899999999999999 7776431 1 124566778999999999999999
Q ss_pred EEEEEccceeEEE
Q 041308 214 LRAFISIIFTLFL 226 (244)
Q Consensus 214 ~~~~~~~~~~~~~ 226 (244)
++.+...--..++
T Consensus 177 ~~~~~~~Kl~y~l 189 (219)
T PF11968_consen 177 VKYKKSKKLAYWL 189 (219)
T ss_pred EEEEecCeEEEEE
Confidence 9987765444333
No 169
>PLN02476 O-methyltransferase
Probab=98.51 E-value=4.4e-07 Score=75.74 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=76.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC---------c
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---------V 124 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---------~ 124 (244)
..+..+|||||+++|..+..+++..| +.+ ++.+|. +...+.|+++ ++|+++.||..+.++ .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~-V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGC-LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 45679999999999999999998765 556 899999 8888888753 689999999876432 2
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
.|+|++-. ...+-...+..+.+.|+|||.+++=+...
T Consensus 195 FD~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 195 YDFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred CCEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 48887653 23456788999999999999987644433
No 170
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.50 E-value=3.1e-06 Score=68.87 Aligned_cols=138 Identities=20% Similarity=0.173 Sum_probs=83.6
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHH-hCCCCCCee-EEeCCCCCC----C---
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVA-KAPSIPEVT-HIGGDMFKS----I--- 122 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~-~a~~~~~i~-~~~gd~~~~----~--- 122 (244)
...+++.++......++||+|||||.++..+++.. .-+ ++++|. +.|+. ..++.+++. +...|+... +
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g-a~~-v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d 140 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG-AKE-VYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPD 140 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC-CCE-EEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCC
Confidence 34466665522355799999999999999999873 345 999999 75555 456666654 334455421 1
Q ss_pred -CcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE-ecccCCCCCCchHHhhhhhcccHhhhhhhccCcee----
Q 041308 123 -HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA-CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKH---- 196 (244)
Q Consensus 123 -p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii-~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---- 196 (244)
+..|+++++.. .+|..+.++|+| |.+++ +-+-..-. + ... ..+|..
T Consensus 141 ~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~---~------~~~--------~~~giv~~~~ 192 (228)
T TIGR00478 141 FATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAG---R------EKK--------NKKGVVRDKE 192 (228)
T ss_pred ceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhc---H------hhc--------CcCCeecCHH
Confidence 12365554433 357889999999 66554 32211100 0 000 012222
Q ss_pred ---cCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 197 ---KTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 197 ---~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...+++...+.+.||++..+...+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 193 AIALALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHHHHHHHcCCCeEeeEEECC
Confidence 235677788889999988887654
No 171
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.50 E-value=8e-08 Score=76.96 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=75.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC---------cc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---------VV 125 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---------~~ 125 (244)
.+..+||+||+++|..+..+++..| +.+ ++.+|. +...+.|++. ++|+++.||..+.++ ..
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~-i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGK-ITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSE-EEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccce-EEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 3578999999999999999999887 467 999999 8888888753 689999999875422 24
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
|+|++-.- ..+-...+..+.+.|+|||.+++=+...
T Consensus 123 D~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred eEEEEccc-----ccchhhHHHHHhhhccCCeEEEEccccc
Confidence 99887643 2344677889999999999888755443
No 172
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.48 E-value=5.1e-07 Score=75.60 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=76.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCC---CCc-ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKS---IHV-VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~---~p~-~D~v 128 (244)
+++.+||-||+|.|..++++++..+--+ ++.+|+ +.+++.+++. +|++++.+|..+- .+. .|+|
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~-i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVER-ITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcce-EEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 4447999999999999999998876556 999999 9999999963 7899999998764 333 5999
Q ss_pred EeccccccCCHH---HHHHHHHHHHHHcCCCCEEEEe
Q 041308 129 FMKWVLTTWTDD---ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 129 ~~~~~lh~~~~~---~~~~~l~~~~~~L~pgG~lii~ 162 (244)
++-..=. ..+. -...+++.++++|+|+|.++..
T Consensus 154 i~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 154 IVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 8664432 1110 0247899999999999999986
No 173
>PRK00536 speE spermidine synthase; Provisional
Probab=98.48 E-value=7.9e-07 Score=73.62 Aligned_cols=89 Identities=13% Similarity=0.032 Sum_probs=69.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCC-CcceEEEe
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSI-HVVDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~-p~~D~v~~ 130 (244)
-+++.+||=||||.|..++++++. |. + ++.+|+ +.|++.+++. +|++++. .+.+.- ...|+|++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~-v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~~~~~~fDVIIv 145 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-H-VDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-e-eEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhhccCCcCCEEEE
Confidence 356799999999999999999965 54 7 999999 9999999872 7888876 222222 23599997
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
-.. + + ..+.+.++++|+|||.++..
T Consensus 146 Ds~---~-~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 146 LQE---P-D---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred cCC---C-C---hHHHHHHHHhcCCCcEEEEC
Confidence 753 2 2 36789999999999999974
No 174
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.46 E-value=5.1e-07 Score=79.39 Aligned_cols=99 Identities=18% Similarity=0.084 Sum_probs=71.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCCC-------cceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSIH-------VVDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~p-------~~D~ 127 (244)
.++.+|||+|||+|.++...+.. ...+ ++++|. +.+++.++++ .+++++.+|+++.+. ..|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~-V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 34689999999999998876653 3346 999999 9999888753 268999999987421 2599
Q ss_pred EEeccccccCCHH-------HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVLTTWTDD-------ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~lh~~~~~-------~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|++.--.-.-+.. .-..+++.+.+.|+|||.++...+
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9987443111111 123456678899999999998664
No 175
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.44 E-value=8.1e-07 Score=72.64 Aligned_cols=98 Identities=12% Similarity=-0.018 Sum_probs=68.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEe----CCCCCCCC--cc--eE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIG----GDMFKSIH--VV--DA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~----gd~~~~~p--~~--D~ 127 (244)
.....+||+|||+|..+..++...|..+ ++++|. +..+..|.++ .++.++. .|...+.+ .+ |+
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~-v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCT-VTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCce-EEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 4456899999999999999999999999 999999 7777777654 6777774 44444322 22 77
Q ss_pred EEecccc--cc----C-------C-----------HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 128 IFMKWVL--TT----W-------T-----------DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 128 v~~~~~l--h~----~-------~-----------~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
++++--. +. + . .+....++.-+.|.|+|||.+.+-
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 7766321 11 0 0 112334667778899999988863
No 176
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.44 E-value=7.4e-07 Score=75.37 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=66.7
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-------CCCeeEEeCCCCCC-C
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-------IPEVTHIGGDMFKS-I 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-------~~~i~~~~gd~~~~-~ 122 (244)
+++.+++..+ ..+..+|||||||+|.++..+++.. .+ ++++|+ +.+++.+++ .++++++.+|+.+. +
T Consensus 24 i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~-V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 24 VLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KK-VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--Cc-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 3445666666 6777899999999999999999875 35 999999 999988764 26799999999875 5
Q ss_pred CcceEEEeccccccCCHHHHHHHH
Q 041308 123 HVVDAIFMKWVLTTWTDDECKLIM 146 (244)
Q Consensus 123 p~~D~v~~~~~lh~~~~~~~~~~l 146 (244)
+..|.|+.+.- .+++.+...++|
T Consensus 100 ~~~d~VvaNlP-Y~Istpil~~ll 122 (294)
T PTZ00338 100 PYFDVCVANVP-YQISSPLVFKLL 122 (294)
T ss_pred cccCEEEecCC-cccCcHHHHHHH
Confidence 55687776544 445554444444
No 177
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.44 E-value=6.2e-07 Score=72.10 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=78.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEe-CCCCCCCC-----cceE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIG-GDMFKSIH-----VVDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~-gd~~~~~p-----~~D~ 127 (244)
.++..+||+||.+.|..+..++...| +.+ ++.+|. +++.+.|+++ ++|.+.. ||..+.+. ..|+
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~-l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGR-LTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCe-EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 56789999999999999999999999 777 999999 9999999874 6788888 58765422 2498
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
|++-. ...+-...|..+.+.|+|||.+++-+...+
T Consensus 136 iFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 136 VFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 88652 234456889999999999998886544443
No 178
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.42 E-value=6.3e-07 Score=80.06 Aligned_cols=100 Identities=15% Similarity=0.224 Sum_probs=69.5
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC--
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH-- 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p-- 123 (244)
.+.+.+.+. .++..+|||+|||+|.++..+++... + ++++|. +.+++.|+++ .+++++.+|+.+.++
T Consensus 281 ~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~~--~-V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 281 VDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQAK--S-VVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhCC--E-EEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 344444444 56668999999999999999997643 5 999999 9999988863 589999999864321
Q ss_pred ----c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 124 ----V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 124 ----~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
. .|+|++.--=-.+. ..+++.+. .++|++.+++
T Consensus 357 ~~~~~~~D~vi~dPPr~G~~----~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRKGCA----AEVLRTII-ELKPERIVYV 394 (431)
T ss_pred HhcCCCCCEEEECcCCCCCC----HHHHHHHH-hcCCCEEEEE
Confidence 1 48888643311111 24555544 4889876665
No 179
>PRK04148 hypothetical protein; Provisional
Probab=98.39 E-value=2.4e-06 Score=63.35 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=68.8
Q ss_pred HHHhccCCCCCCcceEEEEcCCccH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCC----cceE
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIH----VVDA 127 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p----~~D~ 127 (244)
+.+.+.++ -....++||||||+|. .+..|.+.. .+ ++++|. +..++.+++ ..++++.+|.+++-+ .+|+
T Consensus 6 ~~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~G--~~-ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~l 80 (134)
T PRK04148 6 EFIAENYE-KGKNKKIVELGIGFYFKVAKKLKESG--FD-VIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKL 80 (134)
T ss_pred HHHHHhcc-cccCCEEEEEEecCCHHHHHHHHHCC--CE-EEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCE
Confidence 34555554 3345799999999996 777777653 46 999999 888888876 457999999999833 2599
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|.... ++.+...-+.++++.. |.-++|...
T Consensus 81 iysir-----pp~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 81 IYSIR-----PPRDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred EEEeC-----CCHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 88663 3444555556666533 566666544
No 180
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.38 E-value=8.3e-07 Score=73.07 Aligned_cols=104 Identities=18% Similarity=0.139 Sum_probs=78.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAI 128 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v 128 (244)
...+++.++ ...-++|+|||.|.+.. ..|.+. .+++|+ ...+..+++.....+...|+.+. .++ .|..
T Consensus 36 v~qfl~~~~---~gsv~~d~gCGngky~~----~~p~~~-~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ 107 (293)
T KOG1331|consen 36 VRQFLDSQP---TGSVGLDVGCGNGKYLG----VNPLCL-IIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAA 107 (293)
T ss_pred HHHHHhccC---CcceeeecccCCcccCc----CCCcce-eeecchhhhhccccccCCCceeehhhhhcCCCCCCccccc
Confidence 334444443 36789999999996654 447778 999999 88888888754435677888775 443 4999
Q ss_pred EeccccccCCHH-HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 129 FMKWVLTTWTDD-ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 129 ~~~~~lh~~~~~-~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+...++||+... ....+++++.|.|+|||...+.-+
T Consensus 108 lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 108 LSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 999999998854 466789999999999999776533
No 181
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.36 E-value=7e-07 Score=75.55 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=71.0
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc--ceEEEeccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV--VDAIFMKWVLT 135 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~--~D~v~~~~~lh 135 (244)
...|||||||||.++...++.+ ..+ +.++|...+.+.|++. ..|+++.|...+- +|. -|+|++.|.=+
T Consensus 61 dK~VlDVGcGtGILS~F~akAG-A~~-V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAG-ARK-VYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhC-cce-EEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 4899999999999999999987 446 9999998888877752 5689999988664 774 39999988877
Q ss_pred cCCHHH-HHHHHHHHHHHcCCCCEEE
Q 041308 136 TWTDDE-CKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 136 ~~~~~~-~~~~l~~~~~~L~pgG~li 160 (244)
.+--+. ...+|-.=-+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 655332 2233333447899999875
No 182
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=8.9e-07 Score=69.71 Aligned_cols=91 Identities=19% Similarity=0.151 Sum_probs=70.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-C-CCCeEEEeec-hHHHHhCCCC----------------CCeeEEeCCCCCCCC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-C-FICEGINFDL-PEVVAKAPSI----------------PEVTHIGGDMFKSIH 123 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-p-~~~~~~~~D~-~~~i~~a~~~----------------~~i~~~~gd~~~~~p 123 (244)
+.++.+.||+|+|+|.++..++... + ... .+++|. |++++.++++ .+..++.||.....+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~-~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGN-VHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCcc-ccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 5678999999999999998888543 2 322 488999 9999888763 567899999988755
Q ss_pred c---ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 124 V---VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 124 ~---~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+ .|.|.+-..- .++.+++...|+|||+++|.
T Consensus 159 e~a~YDaIhvGAaa--------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 159 EQAPYDAIHVGAAA--------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccCCcceEEEccCc--------cccHHHHHHhhccCCeEEEe
Confidence 4 4998876322 35567888889999999984
No 183
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.35 E-value=7.1e-07 Score=69.77 Aligned_cols=101 Identities=15% Similarity=0.040 Sum_probs=65.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCC---------CCCeeEEeCCCCCCC-----C--cce
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPS---------IPEVTHIGGDMFKSI-----H--VVD 126 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~---------~~~i~~~~gd~~~~~-----p--~~D 126 (244)
...+.+|||+|||+|..+..+++..+..+ ++.-|.++.++..+. ..++.+...|.-++. . ..|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~-Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAAR-VVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SE-EEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCce-EEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 34568999999999999999998865566 888898446654442 266788888775532 2 259
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
+|+.+.+++. ++....+++-+.+.|+|+|.+++.....
T Consensus 122 ~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999999975 5556789999999999998888776654
No 184
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.35 E-value=3.2e-06 Score=72.09 Aligned_cols=109 Identities=10% Similarity=0.163 Sum_probs=79.4
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc----CCCCeEEEeec-hHHHHhCCC------CCCeeE--EeCCCCC
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH----CFICEGINFDL-PEVVAKAPS------IPEVTH--IGGDMFK 120 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~~D~-~~~i~~a~~------~~~i~~--~~gd~~~ 120 (244)
.++++.+ .+...++|+|||.|.=+..|++.. ...+ .+.+|+ ..+++.+.+ .+.+.+ +.||+.+
T Consensus 68 ~~Ia~~i---~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~-Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 68 SDIAASI---PSGSMLVELGSGNLRKVGILLEALERQKKSVD-YYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHhc---CCCCEEEEECCCchHHHHHHHHHHHhcCCCce-EEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 3455554 345689999999999877776654 3466 899999 667766543 255665 7899866
Q ss_pred C---CCc------ceE-EEeccccccCCHHHHHHHHHHHHH-HcCCCCEEEE-ecccC
Q 041308 121 S---IHV------VDA-IFMKWVLTTWTDDECKLIMENYYK-ALLAGRKLIA-CEPVL 166 (244)
Q Consensus 121 ~---~p~------~D~-v~~~~~lh~~~~~~~~~~l~~~~~-~L~pgG~lii-~d~~~ 166 (244)
. ++. ..+ +++..++.+++++++..+|+++++ .|+||+.++| +|...
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k 201 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCK 201 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 4 321 244 446689999999999999999999 9999998888 35443
No 185
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=1.6e-06 Score=67.39 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=55.2
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCcceEEEecccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHVVDAIFMKWVL 134 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~~D~v~~~~~l 134 (244)
.+.+|+|+|||||.+++..+-..|. + ++++|+ |+.++.++++ .++.|+..|..+.-...|.++++--+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~-V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-R-VLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-E-EEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence 4578999999999999999877664 5 899999 9999999976 57999999985544445778777555
No 186
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.31 E-value=1.6e-06 Score=71.36 Aligned_cols=93 Identities=13% Similarity=0.069 Sum_probs=73.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC----------
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---------- 123 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---------- 123 (244)
..+..+||+||+++|..+..+++..| +.+ ++.+|. +...+.|++. ++|+++.||..+.++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~-v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 34578999999999999999998765 667 999999 8888887753 789999999876422
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
..|+|++-.- ..+-...+..+.+.|+|||.+++
T Consensus 156 ~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 156 TFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE
Confidence 2488886633 33456778888999999999775
No 187
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.30 E-value=1e-06 Score=75.44 Aligned_cols=89 Identities=12% Similarity=0.011 Sum_probs=62.2
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC----cceEEEeccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH----VVDAIFMKWV 133 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p----~~D~v~~~~~ 133 (244)
+..+|||+|||+|.++..+++.. .+ ++++|. +.+++.|+++ .+++|+.+|+.+..+ ..|+|++.--
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~--~~-V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG--MQ-LTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC--CE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 35899999999999999999853 46 999999 9999888753 579999999865321 2599987743
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
-.... +.+.+....++|++.+++
T Consensus 250 r~G~~-----~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 250 RRGIG-----KELCDYLSQMAPRFILYS 272 (315)
T ss_pred CCCcc-----HHHHHHHHHcCCCeEEEE
Confidence 21111 122233344677665554
No 188
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.30 E-value=5.8e-05 Score=62.71 Aligned_cols=134 Identities=14% Similarity=0.105 Sum_probs=93.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHH-------HhCCC-----------------------------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVV-------AKAPS----------------------------- 107 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i-------~~a~~----------------------------- 107 (244)
...+||--|||.|.++-++++++- . +.+.+. -.|+ ....+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~--~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY--A-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc--e-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 457999999999999999998843 3 556665 3232 11111
Q ss_pred ----------CCCeeEEeCCCCCCC-Cc-----ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCC
Q 041308 108 ----------IPEVTHIGGDMFKSI-HV-----VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSN 171 (244)
Q Consensus 108 ----------~~~i~~~~gd~~~~~-p~-----~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~ 171 (244)
..+++...|||.+-. +. .|+|+.++++.. ..+...-++.|.++|||||..|-.-+....-..
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~ 210 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFEP 210 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCCC
Confidence 035788899998752 22 299999988754 445778899999999999988876655443211
Q ss_pred chHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEE
Q 041308 172 ESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 172 ~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 218 (244)
.. . ......+.+.+|+.+++++.||++++.+.
T Consensus 211 ------------~~-~--~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 211 ------------MS-I--PNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ------------CC-C--CCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 00 0 01234678899999999999999988655
No 189
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=6.6e-07 Score=75.48 Aligned_cols=111 Identities=16% Similarity=0.216 Sum_probs=74.0
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC---C---CCeeEEeCCCCCC---CCcc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS---I---PEVTHIGGDMFKS---IHVV 125 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~---~---~~i~~~~gd~~~~---~p~~ 125 (244)
+...-+.+++ ++|||||.|+|.-+.++-..+|+++.++++.. |.+-+.... + .....-..|+..+ +|.+
T Consensus 105 L~~~~~dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a 183 (484)
T COG5459 105 LQKRVPDFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA 183 (484)
T ss_pred HHHhCCCcCc-chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc
Confidence 3333333454 67999999999999999999999875777776 433222221 1 2222223344333 5666
Q ss_pred eEEEeccccccCCHHHHHH----HHHHHHHHcCCCCEEEEecccCC
Q 041308 126 DAIFMKWVLTTWTDDECKL----IMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~----~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
|.+.+..++|.+-++...+ .++++...+.|||.|+|+|..-+
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 8888777777655444344 89999999999999999997544
No 190
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.30 E-value=4.8e-07 Score=74.69 Aligned_cols=99 Identities=22% Similarity=0.212 Sum_probs=73.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCC---CCc--ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKS---IHV--VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~---~p~--~D~ 127 (244)
+++.+||=||+|.|..++++++..+..+ ++++|+ |.+++.+++. +|++++.+|..+- .+. .|+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~-i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVES-ITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SE-EEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcce-EEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 4579999999999999999986544445 999999 9999998862 6999999998643 333 599
Q ss_pred EEeccccccCCHHH--HHHHHHHHHHHcCCCCEEEEec
Q 041308 128 IFMKWVLTTWTDDE--CKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 128 v~~~~~lh~~~~~~--~~~~l~~~~~~L~pgG~lii~d 163 (244)
|++-..--.-+... ...+++.+.++|+|||.+++.-
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 98643321111111 2478999999999999999854
No 191
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.25 E-value=2.7e-06 Score=67.94 Aligned_cols=143 Identities=20% Similarity=0.136 Sum_probs=93.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCee--EEeCCCCC-CCCc--ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVT--HIGGDMFK-SIHV--VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~--~~~gd~~~-~~p~--~D~v~~~~~lh 135 (244)
+....++|||||-|...+++.... +.+.+.+|. ..|++.++.. +.+. ...+|-.. ++.+ .|+|+.+..+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh
Confidence 345789999999999999999876 444899999 8999999875 4443 33455322 2333 39999999998
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCcee------cCHHHHHHHHHhC
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKH------KTEQEFKQLGFST 209 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------~t~~e~~~ll~~a 209 (244)
..++ ...-+.+|..+|||+|.++-.=. ..+ ..++ ..-...+..+- ..||.. -...++-.+|..|
T Consensus 149 W~Nd--LPg~m~~ck~~lKPDg~Fiasml--ggd---TLyE-LR~slqLAelE--R~GGiSphiSPf~qvrDiG~LL~rA 218 (325)
T KOG2940|consen 149 WTND--LPGSMIQCKLALKPDGLFIASML--GGD---TLYE-LRCSLQLAELE--REGGISPHISPFTQVRDIGNLLTRA 218 (325)
T ss_pred hhcc--CchHHHHHHHhcCCCccchhHHh--ccc---cHHH-HHHHhhHHHHH--hccCCCCCcChhhhhhhhhhHHhhc
Confidence 6554 35778999999999998874221 111 1111 11122222221 122211 1346889999999
Q ss_pred CCCeEEEEE
Q 041308 210 GFPHLRAFI 218 (244)
Q Consensus 210 Gf~~~~~~~ 218 (244)
||....+..
T Consensus 219 GF~m~tvDt 227 (325)
T KOG2940|consen 219 GFSMLTVDT 227 (325)
T ss_pred Ccccceecc
Confidence 999776643
No 192
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.23 E-value=1.3e-05 Score=68.18 Aligned_cols=138 Identities=16% Similarity=0.175 Sum_probs=92.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------------CCeeEEeCCCCCCCCc----
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------------PEVTHIGGDMFKSIHV---- 124 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------------~~i~~~~gd~~~~~p~---- 124 (244)
.++..++|-+|+|.|.-++++.+ +|...+++.+|+ |.|++.++.+ +|++++..|.++-+..
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 35678999999999999999984 587666999999 9999999842 8999999998875322
Q ss_pred ceEEEeccc------cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecC
Q 041308 125 VDAIFMKWV------LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 125 ~D~v~~~~~------lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
.|.|+.-.. +..+. ...+.+-+.+.|+++|.+++.-....-.+ +..+
T Consensus 366 fD~vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~VvQags~y~tp------------~vfw------------ 418 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVVQAGSPYFTP------------RVFW------------ 418 (508)
T ss_pred ccEEEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEEecCCCccCC------------ceee------------
Confidence 377774321 11111 23567778899999999998543111110 0000
Q ss_pred HHHHHHHHHhCCCCeEEEE---EccceeEEEeecC
Q 041308 199 EQEFKQLGFSTGFPHLRAF---ISIIFTLFLSSKS 230 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~---~~~~~~~~~~~~~ 230 (244)
-+...+++|||...-.. +.++..+++++.+
T Consensus 419 --~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~ 451 (508)
T COG4262 419 --RIDATIKSAGYRVWPYHVHVPTFGEWGFILAAP 451 (508)
T ss_pred --eehhHHHhCcceeeeeEEecCcccccceeeccc
Confidence 12456788998765542 2356667777665
No 193
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.23 E-value=4e-06 Score=76.18 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=69.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhC-CC-----CCCeeEEeCCCC---CCCCcc--eEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKA-PS-----IPEVTHIGGDMF---KSIHVV--DAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a-~~-----~~~i~~~~gd~~---~~~p~~--D~v~~~~ 132 (244)
...-+||||||.|.++..+++.+|+.. ++++|. ...+..+ ++ ..++.++.+|+. ..+|.+ |.|++.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~-~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDAL-FIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 357899999999999999999999999 999998 5444333 22 267888888763 225553 6666553
Q ss_pred cc------ccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 133 VL------TTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 133 ~l------h~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
-= ||=..--...+++.+++.|+|||.+.+..
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 32 22111112468999999999999999864
No 194
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=1.2e-05 Score=63.82 Aligned_cols=115 Identities=18% Similarity=0.161 Sum_probs=80.3
Q ss_pred HHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeechHHHHhCCCCCCeeEEeCCCCCC-C
Q 041308 45 MSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS-I 122 (244)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~-~ 122 (244)
..+.+..-..+|.+.+..++++.+|+|+|+.+|.+++.+++... +.+ ++++|+.+| ...+++.++++|++.+ .
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~-ivavDi~p~----~~~~~V~~iq~d~~~~~~ 99 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGK-IVAVDILPM----KPIPGVIFLQGDITDEDT 99 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCc-EEEEECccc----ccCCCceEEeeeccCccH
Confidence 33333333556777777678899999999999999999998764 466 999998545 3346699999999875 2
Q ss_pred --------Cc--ceEEEec---ccc-----ccCC-HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 123 --------HV--VDAIFMK---WVL-----TTWT-DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 123 --------p~--~D~v~~~---~~l-----h~~~-~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+. .|+|++- ++- +|.. -.-+..++.-+.+.|+|||.+++-..
T Consensus 100 ~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 100 LEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 22 2888733 222 2211 22244566777889999999998765
No 195
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.19 E-value=2.8e-06 Score=67.33 Aligned_cols=91 Identities=9% Similarity=0.001 Sum_probs=62.9
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---C--C-c-ceEEEe
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---I--H-V-VDAIFM 130 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~--p-~-~D~v~~ 130 (244)
..++||++||+|.++.+++.+... + ++++|. +..++.++++ ++++++.+|.++. + . . .|+|++
T Consensus 50 g~~vLDLfaGsG~lglea~srga~-~-v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK-V-AFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC-E-EEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 579999999999999999998753 6 999999 8787777653 4789999998653 2 1 1 377776
Q ss_pred ccccccCCHHHHHHHHHHHH--HHcCCCCEEEE
Q 041308 131 KWVLTTWTDDECKLIMENYY--KALLAGRKLIA 161 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~--~~L~pgG~lii 161 (244)
---...-..+ .+++.+. ..|+++|.+++
T Consensus 128 DPPy~~~~~~---~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 128 DPPFFNGALQ---ALLELCENNWILEDTVLIVV 157 (189)
T ss_pred CcCCCCCcHH---HHHHHHHHCCCCCCCeEEEE
Confidence 6554322222 3344333 35777776554
No 196
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.18 E-value=1.1e-06 Score=77.63 Aligned_cols=97 Identities=15% Similarity=0.242 Sum_probs=66.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec------hHHHHhCCCCCCeeEEeCCC---CCCCCc--ceEEEecc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL------PEVVAKAPSIPEVTHIGGDM---FKSIHV--VDAIFMKW 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~------~~~i~~a~~~~~i~~~~gd~---~~~~p~--~D~v~~~~ 132 (244)
.....+||+|||+|.++..+.++. ++.+.. +..++.|-++. +-...+-+ .=++|. .|+|.+..
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~~~s~rLPfp~~~fDmvHcsr 189 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALERG-VPAMIGVLGSQRLPFPSNAFDMVHCSR 189 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhcC-cchhhhhhccccccCCccchhhhhccc
Confidence 345788999999999999999865 333332 33444444321 22121222 223555 39999999
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
++..|.+.+ -.+|-++-|+|||||++++..+-..
T Consensus 190 c~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 190 CLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 998888776 3689999999999999998766443
No 197
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.17 E-value=2.3e-06 Score=75.04 Aligned_cols=89 Identities=10% Similarity=-0.016 Sum_probs=63.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC----cceEEEeccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH----VVDAIFMKWV 133 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p----~~D~v~~~~~ 133 (244)
+..+|||+|||+|.++..++... .+ ++++|. +.+++.++++ +++++..+|+.+..+ ..|+|++.--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~--~~-v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD--TQ-LTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC--Ce-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 34799999999999999999643 46 999999 9999888753 578999999865322 2599887744
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
--.+.. ++++.+. .++|++.+++
T Consensus 310 r~G~~~----~~l~~l~-~~~p~~ivyv 332 (374)
T TIGR02085 310 RRGIGK----ELCDYLS-QMAPKFILYS 332 (374)
T ss_pred CCCCcH----HHHHHHH-hcCCCeEEEE
Confidence 322222 3444443 4789877776
No 198
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.16 E-value=4.3e-05 Score=61.18 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=92.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-h----HHHHhCCCCCCeeEEeCCCCCCC------CcceEEEe
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-P----EVVAKAPSIPEVTHIGGDMFKSI------HVVDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~----~~i~~a~~~~~i~~~~gd~~~~~------p~~D~v~~ 130 (244)
++++.+||-+|.++|+...++..... +.. +.+++. | +.+..|++++||--+-.|...|. +..|+|++
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~-VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGV-VYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCc-EEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence 78899999999999999999999764 666 888886 5 66778888899998899998761 12387775
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc--CCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV--LPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS 208 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~ 208 (244)
- +-+ ++|+.-++.|+..-||+||.++++=-. .+... ++. -.-.+-.+.|++
T Consensus 150 D-VaQ---p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~--~p~---------------------~vf~~e~~~L~~ 202 (229)
T PF01269_consen 150 D-VAQ---PDQARIAALNARHFLKPGGHLIISIKARSIDSTA--DPE---------------------EVFAEEVKKLKE 202 (229)
T ss_dssp E--SS---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSS--SHH---------------------HHHHHHHHHHHC
T ss_pred c-CCC---hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcC--CHH---------------------HHHHHHHHHHHH
Confidence 4 332 366778899999999999999985211 11110 000 001222455688
Q ss_pred CCCCeEEEEEcc---ceeEEEeec
Q 041308 209 TGFPHLRAFISI---IFTLFLSSK 229 (244)
Q Consensus 209 aGf~~~~~~~~~---~~~~~~~~~ 229 (244)
.||++.+...+. -++.+++++
T Consensus 203 ~~~~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 203 EGFKPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp TTCEEEEEEE-TTTSTTEEEEEEE
T ss_pred cCCChheEeccCCCCCCcEEEEEE
Confidence 899998887763 356666654
No 199
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=0.00023 Score=56.02 Aligned_cols=143 Identities=16% Similarity=0.124 Sum_probs=98.2
Q ss_pred CCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-h----HHHHhCCCCCCeeEEeCCCCCCCC-----c-ceEEEe
Q 041308 62 GFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-P----EVVAKAPSIPEVTHIGGDMFKSIH-----V-VDAIFM 130 (244)
Q Consensus 62 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~----~~i~~a~~~~~i~~~~gd~~~~~p-----~-~D~v~~ 130 (244)
+++++.+||-+|..+|+...++....++.. +.+++. | +.+..+++++|+--+-+|+..|.. + .|+|+.
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~-iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGR-IYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCc-EEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE
Confidence 388999999999999999999999988777 777775 3 567788888999888899987721 2 387764
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCC
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aG 210 (244)
- +- .++|+.-+..|+..-||+||+++++=-...-+...++.+ --.++. +-|++.|
T Consensus 152 D-VA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~--------------------vf~~ev-~kL~~~~ 206 (231)
T COG1889 152 D-VA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEE--------------------VFKDEV-EKLEEGG 206 (231)
T ss_pred e-cC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHH--------------------HHHHHH-HHHHhcC
Confidence 3 22 246677788999999999997776432211111101100 002233 4458899
Q ss_pred CCeEEEEEcc---ceeEEEeecC
Q 041308 211 FPHLRAFISI---IFTLFLSSKS 230 (244)
Q Consensus 211 f~~~~~~~~~---~~~~~~~~~~ 230 (244)
|++.+..++. -++.+++++.
T Consensus 207 f~i~e~~~LePye~DH~~i~~~~ 229 (231)
T COG1889 207 FEILEVVDLEPYEKDHALIVAKY 229 (231)
T ss_pred ceeeEEeccCCcccceEEEEEee
Confidence 9999987764 3566666653
No 200
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.13 E-value=6.2e-06 Score=67.50 Aligned_cols=78 Identities=17% Similarity=0.308 Sum_probs=64.1
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-C
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-I 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~ 122 (244)
+++.+++.-+ .++...||+||.|||.++..+++... + +++++. |.|++...++ .+.++..||+++. +
T Consensus 46 v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~k--k-VvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGK--K-VVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcC--e-EEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 4566777777 89999999999999999999998764 4 888888 8888776653 5789999999986 8
Q ss_pred CcceEEEeccc
Q 041308 123 HVVDAIFMKWV 133 (244)
Q Consensus 123 p~~D~v~~~~~ 133 (244)
|..|.++.+.-
T Consensus 122 P~fd~cVsNlP 132 (315)
T KOG0820|consen 122 PRFDGCVSNLP 132 (315)
T ss_pred cccceeeccCC
Confidence 88888886433
No 201
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=2.7e-05 Score=60.74 Aligned_cols=146 Identities=16% Similarity=0.007 Sum_probs=89.7
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeechHHH-----------HhCCC--CCCeeEEeCCCCCC
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDLPEVV-----------AKAPS--IPEVTHIGGDMFKS 121 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~~~~i-----------~~a~~--~~~i~~~~gd~~~~ 121 (244)
++.... +++..+|+|+=.|.|.+++.+.... |... ++.+-..+.. ..+++ ..+++.+..+....
T Consensus 40 ~L~FaG-lkpg~tVid~~PGgGy~TrI~s~~vgp~G~-Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~ 117 (238)
T COG4798 40 VLAFAG-LKPGATVIDLIPGGGYFTRIFSPAVGPKGK-VYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVAL 117 (238)
T ss_pred eeEEec-cCCCCEEEEEecCCccHhhhhchhcCCcee-EEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccccc
Confidence 444444 8899999999999999999988753 4444 5444322221 11111 14555554444333
Q ss_pred -CCcc-eEEEecccccc-----CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCc
Q 041308 122 -IHVV-DAIFMKWVLTT-----WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG 194 (244)
Q Consensus 122 -~p~~-D~v~~~~~lh~-----~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 194 (244)
.|+. |++.....-|. +....+.++.+.++++|||||.+++.|..-....... + ...-
T Consensus 118 ~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------d-------t~~~ 181 (238)
T COG4798 118 GAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------D-------TITL 181 (238)
T ss_pred CCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------h-------hhhh
Confidence 2332 66665333222 2355677899999999999999999998765542211 1 0112
Q ss_pred eecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
...+..-..+-.+++||+..--..+
T Consensus 182 ~ri~~a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 182 HRIDPAVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred cccChHHHHHHHHhhcceeeeeehh
Confidence 2345777888889999997765443
No 202
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.07 E-value=3.7e-06 Score=66.08 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=62.5
Q ss_pred HHhccCCCCC--CcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCC---------C
Q 041308 55 SVLDGYDGFK--GVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS---------I 122 (244)
Q Consensus 55 ~l~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~---------~ 122 (244)
++.+.++.++ +..++||+||++|.++..++++. +..+ ++++|+..+ .....+.+..+|+.+. +
T Consensus 11 ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~-v~avDl~~~----~~~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 11 EIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGR-VVAVDLGPM----DPLQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp HHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEE-EEEEESSST----GS-TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred HHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccce-EEEEecccc----ccccceeeeecccchhhHHHhhhhhc
Confidence 4555555233 45899999999999999999987 5667 999999434 1224455555555432 1
Q ss_pred C----cceEEEecccccc---------CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 123 H----VVDAIFMKWVLTT---------WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 123 p----~~D~v~~~~~lh~---------~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ..|+|++-..... ....-+...+.-+.+.|+|||.+++.-.
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 2 2388886552111 1112233445556677999999887544
No 203
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.03 E-value=3.6e-05 Score=61.64 Aligned_cols=114 Identities=19% Similarity=0.214 Sum_probs=81.7
Q ss_pred EEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc---ceEEEeccccccC
Q 041308 69 LVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV---VDAIFMKWVLTTW 137 (244)
Q Consensus 69 vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~---~D~v~~~~~lh~~ 137 (244)
|.||||..|.+...|++.+.--+ ++++|+ +.-++.|++. +++++..+|-++.++. .|+|++.-+=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~-~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG--- 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPK-AIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMG--- 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE----
T ss_pred CceeccchhHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCC---
Confidence 68999999999999999987667 999999 8878777753 7899999998888654 4777776553
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEE
Q 041308 138 TDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAF 217 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 217 (244)
-.....+|.+....+++..+|++.-. .....+++||.+.||.+.+-.
T Consensus 77 -G~lI~~ILe~~~~~~~~~~~lILqP~--------------------------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 -GELIIEILEAGPEKLSSAKRLILQPN--------------------------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp -HHHHHHHHHHTGGGGTT--EEEEEES--------------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred -HHHHHHHHHhhHHHhccCCeEEEeCC--------------------------------CChHHHHHHHHHCCCEEEEeE
Confidence 24567788888777766666665110 125678999999999999865
Q ss_pred Ec
Q 041308 218 IS 219 (244)
Q Consensus 218 ~~ 219 (244)
-+
T Consensus 124 lv 125 (205)
T PF04816_consen 124 LV 125 (205)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 204
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=3.5e-05 Score=63.52 Aligned_cols=91 Identities=10% Similarity=0.157 Sum_probs=65.4
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----CCCeeEEeCCCCCC-CCc-
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----IPEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~~~i~~~~gd~~~~-~p~- 124 (244)
.++.+++..+ ..+...|||||+|.|.++..|+++... ++++++ +.+++..++ .++++++.+|+++- ++.
T Consensus 18 v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 18 VIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhh
Confidence 3566777776 667899999999999999999998765 666666 666665554 38899999999985 774
Q ss_pred --ceEEEeccccccCCHHHHHHHHH
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIME 147 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~ 147 (244)
.+.|+.+.- ++++.+-..++++
T Consensus 94 ~~~~~vVaNlP-Y~Isspii~kll~ 117 (259)
T COG0030 94 AQPYKVVANLP-YNISSPILFKLLE 117 (259)
T ss_pred cCCCEEEEcCC-CcccHHHHHHHHh
Confidence 366665543 4455554444443
No 205
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.98 E-value=1.3e-05 Score=63.03 Aligned_cols=89 Identities=18% Similarity=0.128 Sum_probs=68.0
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC---C---CCCeeEEeCCCCCC-CCc-ceEEEeccccccCC
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP---S---IPEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWT 138 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~---~---~~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~ 138 (244)
+++|||+|.|..++.++-.+|+.+ ++.+|. ..-+...+ . .++++++.+...+. .+. .|+|+++-+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~-~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~--- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQ-VTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP--- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSE-EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCc-EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC---
Confidence 899999999999999999999999 999996 43222222 1 27899999988772 333 59999997752
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 139 DDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
...+++-+...++|||+++..-
T Consensus 127 ---l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 ---LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHhcCCCCEEEEEc
Confidence 2477888999999999999864
No 206
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.97 E-value=1.6e-05 Score=67.04 Aligned_cols=79 Identities=24% Similarity=0.253 Sum_probs=63.3
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC---C
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS---I 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~---~ 122 (244)
+.+++++.+. ..+...+||++||.|..+..+++..| +.+ ++++|. +.+++.+++. .+++++.+|+.+. +
T Consensus 7 ll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~-VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 7 LLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGR-LIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCE-EEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 4567888876 66778999999999999999999986 678 999999 9999988753 4899999998653 2
Q ss_pred C----cceEEEecc
Q 041308 123 H----VVDAIFMKW 132 (244)
Q Consensus 123 p----~~D~v~~~~ 132 (244)
+ ..|.|++..
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 2 247777553
No 207
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.92 E-value=1.2e-05 Score=63.08 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=68.5
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC-------C------CCCeeEEeCCCCCCCCcc-eEEEec
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP-------S------IPEVTHIGGDMFKSIHVV-DAIFMK 131 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~-------~------~~~i~~~~gd~~~~~p~~-D~v~~~ 131 (244)
-.+.|||||.|.+...+.-.+|+-- +.++++ -.+-+..+ . ..++.+...+.+..+|.. .---++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtL-iLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTL-ILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccCccce-eeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 5789999999999999999999988 888886 54443333 2 267888888888777752 111222
Q ss_pred cccccCCHHH-----------HHHHHHHHHHHcCCCCEEEEeccc
Q 041308 132 WVLTTWTDDE-----------CKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 132 ~~lh~~~~~~-----------~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
-.++.++|+- ...++.++.=+|++||.++.+..+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 2333344331 134788899999999999987654
No 208
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.90 E-value=0.00036 Score=59.66 Aligned_cols=98 Identities=19% Similarity=0.174 Sum_probs=72.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCC-c--ceEEEeccccccCCH
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIH-V--VDAIFMKWVLTTWTD 139 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p-~--~D~v~~~~~lh~~~~ 139 (244)
+.++.++||+||++|.++..++++. .+ ++++|...|-......++|.+..+|.+...| . .|.+++-.+. .+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG--~~-V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG--MF-VTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KP 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC--CE-EEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---CH
Confidence 3567899999999999999999885 47 9999986676666777999999999988755 3 3988877653 23
Q ss_pred HHHHHHHHHHHHHcCCC-CEEEEecccCCCC
Q 041308 140 DECKLIMENYYKALLAG-RKLIACEPVLPDD 169 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pg-G~lii~d~~~~~~ 169 (244)
..+++-+.+.|..| -+-.|...-++.+
T Consensus 283 ---~rva~lm~~Wl~~g~cr~aIfnLKlpmk 310 (357)
T PRK11760 283 ---ARVAELMAQWLVNGWCREAIFNLKLPMK 310 (357)
T ss_pred ---HHHHHHHHHHHhcCcccEEEEEEEcCCC
Confidence 35667777888776 3344444444443
No 209
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.00024 Score=59.44 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=97.2
Q ss_pred chHHHhccCCC---CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeech------HHHHhCCC---------------
Q 041308 52 FMTSVLDGYDG---FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLP------EVVAKAPS--------------- 107 (244)
Q Consensus 52 ~~~~l~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~------~~i~~a~~--------------- 107 (244)
+++.+-..++. -+..-+||--|||.|.++..++..++.++ +--+.-- -++...+.
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~q-GNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn 212 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQ-GNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSN 212 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccccc-ccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccc
Confidence 44445555441 11246899999999999999998877655 3211100 00100010
Q ss_pred ------------------------CCCeeEEeCCCCCC--CCc----ceEEEeccccccCCHHHHHHHHHHHHHHcCCCC
Q 041308 108 ------------------------IPEVTHIGGDMFKS--IHV----VDAIFMKWVLTTWTDDECKLIMENYYKALLAGR 157 (244)
Q Consensus 108 ------------------------~~~i~~~~gd~~~~--~p~----~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG 157 (244)
.+..+...|||.+- .+. .|+|+.++++.. ..+...-+..|.+.|+|||
T Consensus 213 ~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~GG 290 (369)
T KOG2798|consen 213 SLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKPGG 290 (369)
T ss_pred ccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccCCc
Confidence 02345567898775 233 399999977754 4557788999999999999
Q ss_pred EEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 158 KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 158 ~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
..+-+-+.+..-.+.. +. . .-.+.+.+.+++..+...-||++++.+.+.
T Consensus 291 vWiNlGPLlYHF~d~~---------g~---~--~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 291 VWINLGPLLYHFEDTH---------GV---E--NEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred EEEeccceeeeccCCC---------CC---c--ccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 9998766544321100 00 0 123567889999999999999999876543
No 210
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.84 E-value=0.00022 Score=53.16 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=66.0
Q ss_pred EEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCCC---C---eeEEeCCCCC---CCCc---ceEEEecccc
Q 041308 69 LVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSIP---E---VTHIGGDMFK---SIHV---VDAIFMKWVL 134 (244)
Q Consensus 69 vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~~---~---i~~~~gd~~~---~~p~---~D~v~~~~~l 134 (244)
++|+|||+|... .+....+. .. ++++|. +.++..++... . +.+..+|... +++. .|++......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAY-VVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCce-EEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999977 44444333 35 788998 77777644321 1 5778888765 2443 4888444444
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
|+.. ....++++.+.|+|+|.+++.+.....
T Consensus 130 ~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4444 458899999999999999998776543
No 211
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.84 E-value=3.2e-06 Score=66.51 Aligned_cols=145 Identities=15% Similarity=0.096 Sum_probs=83.3
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCC-cceEEEeccccccCCHHHH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIH-VVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p-~~D~v~~~~~lh~~~~~~~ 142 (244)
.+.++||+|+|.|..+..++-.+.+ +.+.++ ..|....++ .+.++....-..... ..|+|.+.++|....++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee---vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p-- 185 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE---VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP-- 185 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH---HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--
Confidence 3579999999999999988844433 444466 667666554 333333211001111 23999999999654444
Q ss_pred HHHHHHHHHHcCC-CCEEEEecccCCCCC-CchHHhhhhhcccHhhhhhhccCceecC--HHHHHHHHHhCCCCeEEEEE
Q 041308 143 KLIMENYYKALLA-GRKLIACEPVLPDDS-NESQRTRALLEGDIFVMTIYRAKGKHKT--EQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 143 ~~~l~~~~~~L~p-gG~lii~d~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~t--~~e~~~ll~~aGf~~~~~~~ 218 (244)
-++|+.++.+|+| .|++++.= ++|-.. ...........-|.. + .-+|+.+. ...+-++|+++||.+...+.
T Consensus 186 ~kLL~Di~~vl~psngrvivaL-VLP~~hYVE~N~~g~~~rPdn~-L---e~~Gr~~ee~v~~~~e~lr~~g~~veawTr 260 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPSNGRVIVAL-VLPYMHYVETNTSGLPLRPDNL-L---ENNGRSFEEEVARFMELLRNCGYRVEAWTR 260 (288)
T ss_pred HHHHHHHHHHhccCCCcEEEEE-EecccceeecCCCCCcCCchHH-H---HhcCccHHHHHHHHHHHHHhcCchhhhhhc
Confidence 5999999999999 78877642 222110 000000000011111 1 12344432 23567899999999888765
Q ss_pred cc
Q 041308 219 SI 220 (244)
Q Consensus 219 ~~ 220 (244)
.+
T Consensus 261 lP 262 (288)
T KOG3987|consen 261 LP 262 (288)
T ss_pred CC
Confidence 54
No 212
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.80 E-value=2.5e-05 Score=67.95 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=43.2
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCC
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFK 120 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~ 120 (244)
.++||++||+|.++..+++... + ++++|. +.+++.++++ .+++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~-v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--R-VLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999998887753 6 999999 9999988864 478899998754
No 213
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.76 E-value=3.4e-05 Score=67.66 Aligned_cols=90 Identities=11% Similarity=0.012 Sum_probs=69.4
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC---cceEEEeccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH---VVDAIFMKWVLT 135 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p---~~D~v~~~~~lh 135 (244)
..+|||++||+|..+..++...+..+ ++++|. +..++.++++ .++++..+|..+.+. ..|+|++.-.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~-V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEK-VTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 46899999999999999998876446 999999 9999888764 456788888754332 2599988642
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
..+ ..++..+.+.++|||.+++.
T Consensus 135 Gs~----~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 GSP----APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCc----HHHHHHHHHHhcCCCEEEEE
Confidence 221 35678877889999999997
No 214
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.75 E-value=0.0002 Score=64.45 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=74.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc-ceEEEe
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV-VDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~-~D~v~~ 130 (244)
..++.+|||+++|+|.=+.++++...+ .. ++..|+ +..++..+++ .++.+...|..+. ++. .|.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~-lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGA-IVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 567789999999999999999987653 46 899998 7666655542 5677777776542 343 488883
Q ss_pred ccc------cc-------cCCHHHH-------HHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 131 KWV------LT-------TWTDDEC-------KLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 131 ~~~------lh-------~~~~~~~-------~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
--- +. .|+.++. .++|+++.+.|||||+++-..+.+..
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 211 11 2222221 57899999999999999877776544
No 215
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.72 E-value=8.9e-05 Score=55.88 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=62.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHH----cCCCCeEEEeec-hHHHHhCCCC---------CCeeEEeCCCCCCC-Cc-ce
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQK----HCFICEGINFDL-PEVVAKAPSI---------PEVTHIGGDMFKSI-HV-VD 126 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~~D~-~~~i~~a~~~---------~~i~~~~gd~~~~~-p~-~D 126 (244)
-.+..+|+|+|||.|.++..++.. .++.+ ++++|. +..++.+.+. .++++..++..+.. .. .+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLR-VLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCe-EEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCe
Confidence 456789999999999999999982 37788 999998 7777766642 34555555553331 22 38
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
+++.-|....+++ .+|+.+.+ |+-..+
T Consensus 102 ~~vgLHaCG~Ls~----~~l~~~~~---~~~~~l 128 (141)
T PF13679_consen 102 ILVGLHACGDLSD----RALRLFIR---PNARFL 128 (141)
T ss_pred EEEEeecccchHH----HHHHHHHH---cCCCEE
Confidence 8887777776666 45555554 554444
No 216
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.72 E-value=3.4e-05 Score=67.35 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=43.0
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCC
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFK 120 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~ 120 (244)
.++||++||+|.++..+++... + ++++|. +.+++.++++ .+++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~-v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--R-VLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--E-EEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999998887653 5 999999 9999888764 478899998754
No 217
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.71 E-value=6.5e-05 Score=58.36 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=74.0
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCcceEEEeccccccCC
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHVVDAIFMKWVLTTWT 138 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~ 138 (244)
..+.|+|.|+|.++.-.++. .-+ ++.++. |...+.|.++ .+++++.||..+. +..+|+|+|...=..+-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~r-ViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AER-VIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hce-EEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhh
Confidence 67799999999998877765 234 899998 8887777765 6899999999886 76679998775544444
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 139 DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
++....+++.+.+-||-.++++=.+.
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiPq~v 136 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIPQEV 136 (252)
T ss_pred cccccHHHHHHHHHhhcCCccccHHH
Confidence 55557889999999999999875443
No 218
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=4.1e-05 Score=56.96 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=53.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc---ceEEEecccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV---VDAIFMKWVL 134 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~---~D~v~~~~~l 134 (244)
-.+.+++|+|||.|.+..++ ..|+.+.++|+|+ |..++.++++ -++++.+.|+.+..+. .|.++++.-+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~--sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAF--SMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ccCcchhhhcCchhhhHHHh--hcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 35689999999999998444 4455555999999 9999999876 4678888888877443 3887777665
No 219
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.68 E-value=4.6e-05 Score=66.09 Aligned_cols=142 Identities=19% Similarity=0.170 Sum_probs=94.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc--ceEEEecc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV--VDAIFMKW 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~--~D~v~~~~ 132 (244)
.+...++|+|||.|.....+.. +.... ++++|. +.-+..+... .+..++.+|+.+. +++ .|.+.+.-
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~-f~~~~-~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAV-FKKAG-VVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cccccccccCcCcCchhHHHHH-hccCC-ccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 4556899999999999988874 34556 788887 6555544432 5566788899876 665 48888888
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCc----eecCHHHHHHHHHh
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG----KHKTEQEFKQLGFS 208 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~~t~~e~~~ll~~ 208 (244)
+..|.++. .+++++++++++|||+++..+++.......+.. ...++.... ..+ ....-.+.-+++..
T Consensus 187 ~~~~~~~~--~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~----~~~~i~~~i---~~gd~~~~~~~~~d~~~~~~~ 257 (364)
T KOG1269|consen 187 VVCHAPDL--EKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNS----EHVDILLEI---EGGDALPAETFNTDVFDLLKS 257 (364)
T ss_pred ecccCCcH--HHHHHHHhcccCCCceEEeHHHHHhhhccCCCc----ccccccCce---eccccccceeccccHHHHHhh
Confidence 88888876 488999999999999999998876543211110 111111111 111 22234456677778
Q ss_pred CCCCeEEE
Q 041308 209 TGFPHLRA 216 (244)
Q Consensus 209 aGf~~~~~ 216 (244)
.||.....
T Consensus 258 ~~~~~~~~ 265 (364)
T KOG1269|consen 258 FGFEHLKL 265 (364)
T ss_pred ccchhhhh
Confidence 88877763
No 220
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.65 E-value=0.00011 Score=57.68 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=67.7
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCC--------eEEEeec-hHHHHhCCCC-------CCeeEEeCCC
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFIC--------EGINFDL-PEVVAKAPSI-------PEVTHIGGDM 118 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~--------~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~ 118 (244)
.++.... +++...|||--||+|.+.++.+...++.. ++++.|+ +.+++.++++ ..+.+...|+
T Consensus 19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 3444454 77889999999999999999877655432 2789999 9999888764 5688999999
Q ss_pred CCC-CCc--ceEEEecccccc-CCH-HH----HHHHHHHHHHHcCCCCEEEE
Q 041308 119 FKS-IHV--VDAIFMKWVLTT-WTD-DE----CKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 119 ~~~-~p~--~D~v~~~~~lh~-~~~-~~----~~~~l~~~~~~L~pgG~lii 161 (244)
.+. ++. .|+|++.--... ... .+ -..+++++.++|+|...+++
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 764 333 399998766543 222 11 23467888888988434443
No 221
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.65 E-value=4.9e-05 Score=60.63 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=64.4
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEecc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~ 132 (244)
.+++..|+|.-||.|.++..+++..+..+ ++++|+ |..++..+++ .++....+|..+-.+. +|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~-V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKR-VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSE-EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccE-EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence 45679999999999999999998666667 999999 8888777652 6789999998766543 59888765
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
.-+ +..+|..+.+.+++||.+.
T Consensus 178 p~~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PES------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSS------GGGGHHHHHHHEEEEEEEE
T ss_pred hHH------HHHHHHHHHHHhcCCcEEE
Confidence 322 2467888999999998764
No 222
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.62 E-value=9.9e-05 Score=59.29 Aligned_cols=120 Identities=15% Similarity=0.097 Sum_probs=84.9
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hH---HHHhCCC---CCCeeEEeCCCCCCC--Cc-ceEEEeccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PE---VVAKAPS---IPEVTHIGGDMFKSI--HV-VDAIFMKWVLT 135 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~---~i~~a~~---~~~i~~~~gd~~~~~--p~-~D~v~~~~~lh 135 (244)
..+++|||+|.|..+..++-.+|+.+ ++.+|. .. .++.+.. .++++++.+.+.+.. +. .|+|+++-+--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~-vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~ 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLK-VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCc-EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc
Confidence 58999999999999999998999999 999995 33 2333322 278999998885542 24 79999987642
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
...++.-+...+++||.++..-.....+ -..+.+.....-|+.+.+
T Consensus 147 ------L~~l~e~~~pllk~~g~~~~~k~~~~~~----------------------------e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 147 ------LNVLLELCLPLLKVGGGFLAYKGLAGKD----------------------------ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred ------hHHHHHHHHHhcccCCcchhhhHHhhhh----------------------------hHHHHHHHHHhhcCcEEE
Confidence 2366778888899999887532211100 033456666778888888
Q ss_pred EEEcc
Q 041308 216 AFISI 220 (244)
Q Consensus 216 ~~~~~ 220 (244)
+....
T Consensus 193 ~~~~~ 197 (215)
T COG0357 193 VFSLT 197 (215)
T ss_pred EEEee
Confidence 76654
No 223
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00023 Score=55.10 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=49.4
Q ss_pred cceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc--ceEEEecc
Q 041308 66 VKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV--VDAIFMKW 132 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~--~D~v~~~~ 132 (244)
..-+||||||+|..+..+.+. .|... ....|+ |...+...+. .++..+..|+...+.. -|+++.+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~-~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQAL-YLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCce-EEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECC
Confidence 477899999999999988875 46667 788899 8877664431 5577888888776443 38777664
No 224
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.0018 Score=52.37 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=91.8
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-h-HHHHhCCCCCCeeEEe-CCCCCCCC----c-ce
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-P-EVVAKAPSIPEVTHIG-GDMFKSIH----V-VD 126 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~-~~i~~a~~~~~i~~~~-gd~~~~~p----~-~D 126 (244)
..++.++....+..+||+|+.||.++.-++++.. -+ ++++|. - ++.-..|..+|+.... .|+..-.| + .|
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~-VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KH-VYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cE-EEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCC
Confidence 4556666334568999999999999999998753 35 899998 3 3434445557776654 44433222 2 37
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe-cccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC-EPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~-d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
++++--.+ ++. ..+|-.+...++|++-++.. -+-...... ....-.... -+........++..+
T Consensus 147 ~~v~DvSF--ISL---~~iLp~l~~l~~~~~~~v~LvKPQFEagr~--~v~kkGvv~--------d~~~~~~v~~~i~~~ 211 (245)
T COG1189 147 LIVIDVSF--ISL---KLILPALLLLLKDGGDLVLLVKPQFEAGRE--QVGKKGVVR--------DPKLHAEVLSKIENF 211 (245)
T ss_pred eEEEEeeh--hhH---HHHHHHHHHhcCCCceEEEEecchhhhhhh--hcCcCceec--------CcchHHHHHHHHHHH
Confidence 88776554 333 47889999999999887763 211111100 000000011 112233346788999
Q ss_pred HHhCCCCeEEEEEcc
Q 041308 206 GFSTGFPHLRAFISI 220 (244)
Q Consensus 206 l~~aGf~~~~~~~~~ 220 (244)
+.+.||++..+...+
T Consensus 212 ~~~~g~~~~gl~~Sp 226 (245)
T COG1189 212 AKELGFQVKGLIKSP 226 (245)
T ss_pred HhhcCcEEeeeEccC
Confidence 999999999987654
No 225
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00074 Score=57.74 Aligned_cols=99 Identities=19% Similarity=0.079 Sum_probs=74.5
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeC-CCCCC-CCc--ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGG-DMFKS-IHV--VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~g-d~~~~-~p~--~D~v~~~ 131 (244)
.+++..|||-=||||.++++..-. +++ ++|.|+ ..|++-++.+ +...+..+ |+.+. ++. .|+|++-
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~-viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GAR-VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--Cce-EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEec
Confidence 567789999999999999988765 456 999999 9999999875 34445555 87664 776 4888754
Q ss_pred cccccCC-------HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWT-------DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~-------~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
--..--+ ++-...+|..+.++|++||++++.-+
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 3322111 34467889999999999999998654
No 226
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00046 Score=54.88 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=85.6
Q ss_pred HHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCC
Q 041308 44 AMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGD 117 (244)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd 117 (244)
.|.++.++++..+++.+ .+++.+||.||=|-|.....++++-|..+ .+++. |.+.+..++. ++|....|-
T Consensus 82 VMm~WEtpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H--~IiE~hp~V~krmr~~gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 82 VMMRWETPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEH--WIIEAHPDVLKRMRDWGWREKENVIILEGR 157 (271)
T ss_pred hhhhhhhHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcce--EEEecCHHHHHHHHhcccccccceEEEecc
Confidence 35566666666666665 37789999999999999999999888877 55676 9999888763 677777765
Q ss_pred CCC---CCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 118 MFK---SIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 118 ~~~---~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
..+ .+|. .|-|..--.-.+ .++...+.+.+.+.|||+|.+-.......
T Consensus 158 WeDvl~~L~d~~FDGI~yDTy~e~--yEdl~~~hqh~~rLLkP~gv~SyfNg~~~ 210 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDTYSEL--YEDLRHFHQHVVRLLKPEGVFSYFNGLGA 210 (271)
T ss_pred hHhhhccccccCcceeEeechhhH--HHHHHHHHHHHhhhcCCCceEEEecCccc
Confidence 433 3555 376664433222 34567889999999999999987765433
No 227
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.53 E-value=0.00018 Score=60.06 Aligned_cols=96 Identities=17% Similarity=0.271 Sum_probs=67.2
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----CCCeeEEeCCCCCC-CCc-
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----IPEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~~~i~~~~gd~~~~-~p~- 124 (244)
+++.+++.++ .++...|||+|+|+|.++..|++.. -+ +++++. +.+.+..++ .++++++.+|+++- .+.
T Consensus 18 ~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~-v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KR-VIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SE-EEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--Cc-ceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 3455777776 6678999999999999999999987 34 888888 777766654 48999999999875 444
Q ss_pred ---c-eEEEeccccccCCHHHHHHHHHHHHHHcCCC
Q 041308 125 ---V-DAIFMKWVLTTWTDDECKLIMENYYKALLAG 156 (244)
Q Consensus 125 ---~-D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg 156 (244)
. ..|+.+.- ++++ ..++.++...-+.|
T Consensus 94 ~~~~~~~vv~NlP-y~is----~~il~~ll~~~~~g 124 (262)
T PF00398_consen 94 LKNQPLLVVGNLP-YNIS----SPILRKLLELYRFG 124 (262)
T ss_dssp CSSSEEEEEEEET-GTGH----HHHHHHHHHHGGGC
T ss_pred hcCCceEEEEEec-ccch----HHHHHHHhhccccc
Confidence 2 45554433 2333 35666666644443
No 228
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.49 E-value=0.00083 Score=55.94 Aligned_cols=158 Identities=13% Similarity=0.026 Sum_probs=99.8
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCC---------CCCeeEEeCCCCCCC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPS---------IPEVTHIGGDMFKSI 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~---------~~~i~~~~gd~~~~~ 122 (244)
.++..+..+- -.+...|+.+|||--.-+..+... ++++ +.-+|.|++++..++ ..+..++..|+.+.+
T Consensus 69 ~~D~~i~~~~-~~g~~qvV~LGaGlDTr~~Rl~~~-~~~~-~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w 145 (260)
T TIGR00027 69 FFDDFLLAAV-AAGIRQVVILGAGLDTRAYRLPWP-DGTR-VFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDW 145 (260)
T ss_pred HHHHHHHHHH-hcCCcEEEEeCCccccHHHhcCCC-CCCe-EEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhH
Confidence 3444444432 234568999999988877766422 3567 888888988865543 257889999987332
Q ss_pred C----------c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHh-hhhhcccHhh-hhh
Q 041308 123 H----------V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRT-RALLEGDIFV-MTI 189 (244)
Q Consensus 123 p----------~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~-~~~~~~d~~~-~~~ 189 (244)
. . .-++++.-++..++.+++.++|+.+.+...||+.+++ |.+.+-.. .... .......... ..
T Consensus 146 ~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~--~~~~~~~~~~~~~~~~~~- 221 (260)
T TIGR00027 146 PAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDG--EWRAGMRAPVYHAARGVD- 221 (260)
T ss_pred HHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-Eeccccch--hHHHHHHHHHHHhhhccc-
Confidence 1 1 2578889999999999999999999998889888775 44332111 0000 0000000000 00
Q ss_pred hccCceecCHHHHHHHHHhCCCCeEEE
Q 041308 190 YRAKGKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 190 ~~~~~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
..+-....+.++..++|++.||+....
T Consensus 222 ~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 222 GSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred ccccccCCChhhHHHHHHHCCCeeecC
Confidence 001112246789999999999998765
No 229
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.49 E-value=0.00017 Score=61.64 Aligned_cols=108 Identities=18% Similarity=0.134 Sum_probs=70.3
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-------cCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCC
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-------HCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGD 117 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd 117 (244)
+-+++..+ ..+..+|+|-+||+|.++.++.+. .+..+ +.|+|+ +.++..++.+ ....+..+|
T Consensus 36 ~l~~~~~~-~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~-i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d 113 (311)
T PF02384_consen 36 DLMVKLLN-PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEIN-IYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGD 113 (311)
T ss_dssp HHHHHHHT-T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEE-EEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-
T ss_pred HHHHhhhh-ccccceeechhhhHHHHHHHHHHhhcccccccccce-eEeecCcHHHHHHHHhhhhhhccccccccccccc
Confidence 33444444 566789999999999999998874 36667 999999 7777665521 334688899
Q ss_pred CCCC--CC---cceEEEeccccccC--CH-----------------HHHHHHHHHHHHHcCCCCEEEEec
Q 041308 118 MFKS--IH---VVDAIFMKWVLTTW--TD-----------------DECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 118 ~~~~--~p---~~D~v~~~~~lh~~--~~-----------------~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+.. .. ..|+|++.--+-.. .+ ..-..++.++.+.|++||+++++=
T Consensus 114 ~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 114 SLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 8765 22 25999976443221 10 011257899999999999976643
No 230
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.45 E-value=0.00082 Score=63.72 Aligned_cols=110 Identities=12% Similarity=-0.013 Sum_probs=75.0
Q ss_pred hHHHhccCCCC-CCcceEEEEcCCccHHHHHHHHHc------------------------------------------CC
Q 041308 53 MTSVLDGYDGF-KGVKRLVDVGGSAGDCLRIILQKH------------------------------------------CF 89 (244)
Q Consensus 53 ~~~l~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~------------------------------------------p~ 89 (244)
+..++.... | ++...++|..||+|+++++.+... ..
T Consensus 178 Aaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 178 AAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 444555444 6 557899999999999999877531 12
Q ss_pred CCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC----cceEEEecccccc-CC-HHHHHHHHHHHHHHcC
Q 041308 90 ICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH----VVDAIFMKWVLTT-WT-DDECKLIMENYYKALL 154 (244)
Q Consensus 90 ~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p----~~D~v~~~~~lh~-~~-~~~~~~~l~~~~~~L~ 154 (244)
.+ ++++|+ +.+++.|+.+ +++++..+|+.+. .+ ..|+|+++--... +. ..+...+.+.+.+.|+
T Consensus 257 ~~-i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 257 SK-FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred ce-EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 35 899999 9999998864 5689999999764 22 1499998855422 22 2334455555555544
Q ss_pred ---CCCEEEEecc
Q 041308 155 ---AGRKLIACEP 164 (244)
Q Consensus 155 ---pgG~lii~d~ 164 (244)
||++++++..
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8988877643
No 231
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.41 E-value=4.7e-05 Score=58.54 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=46.7
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC-----c-ceEEEecc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH-----V-VDAIFMKW 132 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p-----~-~D~v~~~~ 132 (244)
..|+|+.||.|..++.+++.+.. ++++|+ |..++.++.+ ++|.++.+|+++.++ . .|+|+++-
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 36899999999999999998654 899999 9888888753 689999999976422 1 37777654
No 232
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.0016 Score=50.74 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=66.3
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeechHHHHhCCCCCCeeEEeC-CCCCC---------CCc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDLPEVVAKAPSIPEVTHIGG-DMFKS---------IHV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~~~~i~~a~~~~~i~~~~g-d~~~~---------~p~ 124 (244)
+=+.|.-+++..+|||+||.+|.+++-..++. |+.. +.++|+-... ..+.+.++.+ |+.++ +|.
T Consensus 60 indKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~-v~gVDllh~~----p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 60 INDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGM-VLGVDLLHIE----PPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred ehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCce-EEEEeeeecc----CCCCcccccccccCCHHHHHHHHHhCCC
Confidence 33455546788999999999999999888775 8888 9999974332 2244555555 55443 233
Q ss_pred --ceEEEeccccccCC----------HHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 125 --VDAIFMKWVLTTWT----------DDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 125 --~D~v~~~~~lh~~~----------~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.|+|++- +.+.-+ -+-|..+|.-....++|+|.+++--+.
T Consensus 135 r~VdvVlSD-MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 135 RPVDVVLSD-MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred CcccEEEec-cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 2766643 332211 223444555556677899999986653
No 233
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.34 E-value=0.00049 Score=57.43 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=58.8
Q ss_pred cceEEEEcCCc-cHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCC--------CCCeeEEeCCCCCC---CCcceEEEec
Q 041308 66 VKRLVDVGGSA-GDCLRIILQKH-CFICEGINFDL-PEVVAKAPS--------IPEVTHIGGDMFKS---IHVVDAIFMK 131 (244)
Q Consensus 66 ~~~vLDvG~G~-G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~--------~~~i~~~~gd~~~~---~p~~D~v~~~ 131 (244)
+.+|+=||||. -..++.+++.+ ++.. ++++|. |..++.+++ ..+++|+++|..+. +...|+|++.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGAR-VHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--E-EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 46999999995 45566666554 5677 899999 888887764 27899999998653 3345999988
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.... .+.++..++|+++.+.++||.++++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7764 23334579999999999999998874
No 234
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.34 E-value=0.00034 Score=61.25 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=75.3
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCCC-------cceEEE
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSIH-------VVDAIF 129 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~p-------~~D~v~ 129 (244)
+.+|||+=|=||.++.+.+..+. .+ +|.+|+ ...++-|+++ .++.++.+|.|+-+. ..|+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA-~~-vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA-SE-VTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC-Cc-eEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 79999999999999999997653 25 899999 8888888864 678999999988643 249998
Q ss_pred ecccc------ccCC-HHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 130 MKWVL------TTWT-DDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 130 ~~~~l------h~~~-~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+---- .-+. ...-..++..+.+.|+|||.+++..+.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 64221 0011 223457899999999999999997763
No 235
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.31 E-value=0.00089 Score=53.82 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=85.5
Q ss_pred ccCchHHHHHHHHHHccc----c--------cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec
Q 041308 32 GKKPKMNGLMRKAMSRVF----V--------PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL 98 (244)
Q Consensus 32 ~~~~~~~~~f~~~~~~~~----~--------~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~ 98 (244)
.++++..+...++-.... . .+.+.+++.+ ++.+.||||.=||..+..++...|+ .+ ++.+|.
T Consensus 32 ~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~----~ak~~lelGvfTGySaL~~Alalp~dGr-v~a~ei 106 (237)
T KOG1663|consen 32 PREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLL----NAKRTLELGVFTGYSALAVALALPEDGR-VVAIEI 106 (237)
T ss_pred cCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHh----CCceEEEEecccCHHHHHHHHhcCCCce-EEEEec
Confidence 455666665555543331 1 1234455544 3789999999999999999999985 56 899997
Q ss_pred -hHHHHhCC-------CCCCeeEEeCCCCCCCCc---------ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 99 -PEVVAKAP-------SIPEVTHIGGDMFKSIHV---------VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 99 -~~~i~~a~-------~~~~i~~~~gd~~~~~p~---------~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+...+.+. -...|+++.|+..+.+++ .|.+++ .|+.+.- ...+.++.+.+|+||.+++
T Consensus 107 d~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFv----DadK~nY-~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 107 DADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFV----DADKDNY-SNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred ChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEE----ccchHHH-HHHHHHHHhhcccccEEEE
Confidence 55544443 237899999998776332 276653 4555554 4789999999999999886
Q ss_pred ecccCC
Q 041308 162 CEPVLP 167 (244)
Q Consensus 162 ~d~~~~ 167 (244)
=....+
T Consensus 182 DNvl~~ 187 (237)
T KOG1663|consen 182 DNVLWP 187 (237)
T ss_pred eccccC
Confidence 543433
No 236
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.31 E-value=0.00084 Score=61.61 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=47.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCC--------CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC--------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCF--------ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-------- 121 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~--------~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-------- 121 (244)
...+|||.|||+|.++..+++..+. .. ++++|+ +..+..++.. ..+++..+|+...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~-i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELN-IYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceee-eeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccc
Confidence 3469999999999999999887642 45 789999 8887766542 2455566665432
Q ss_pred CCcceEEEeccc
Q 041308 122 IHVVDAIFMKWV 133 (244)
Q Consensus 122 ~p~~D~v~~~~~ 133 (244)
.+..|+|+.+--
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 122499997743
No 237
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.28 E-value=0.00013 Score=51.96 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=40.2
Q ss_pred EEEcCCccHHHHHHHHHcCCC---CeEEEeec-h---HHHHhCCC---CCCeeEEeCCCCCCC---C--cceEEEecccc
Q 041308 70 VDVGGSAGDCLRIILQKHCFI---CEGINFDL-P---EVVAKAPS---IPEVTHIGGDMFKSI---H--VVDAIFMKWVL 134 (244)
Q Consensus 70 LDvG~G~G~~~~~l~~~~p~~---~~~~~~D~-~---~~i~~a~~---~~~i~~~~gd~~~~~---p--~~D~v~~~~~l 134 (244)
||+|+..|..+..+++..+.. + ++++|. + ...+..++ ..+++++.+|..+.+ + ..|++++-. -
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~-~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGK-LYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-D 78 (106)
T ss_dssp ---------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCC-EEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-C
Confidence 689999999999988776543 5 899998 6 34344333 268999999986543 3 238877653 2
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
|. .+.+..-++.+.+.|+|||.+++-|
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 33 3446678999999999999998865
No 238
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.22 E-value=0.0033 Score=49.39 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=70.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCcceEEEecccccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHVVDAIFMKWVLTT 136 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~~D~v~~~~~lh~ 136 (244)
.=.+.+|||+|+|+|..++..++.... . ++..|. |..++..+-+ -.|.++..|..-+-+..|+++...++..
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~-~-v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAA-E-VVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhH-H-HHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecC
Confidence 445689999999999999998877542 3 555666 6666655543 4577777777553334599999999854
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
.....+++.-..+....|..+++-|+-.+..
T Consensus 155 --~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 155 --HTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred --chHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 3445677774444455677777767655433
No 239
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.14 E-value=0.00049 Score=51.59 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=41.3
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCC
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDM 118 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~ 118 (244)
.++|||||.|.++..+++.+|..+ ++++|. |.+.+.++++ +++++....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~-v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGR-VIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCE-EEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 489999999999999999999888 999999 8888877653 4566666544
No 240
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.10 E-value=0.0086 Score=47.96 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=85.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC-c--ceEEEeccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH-V--VDAIFMKWV 133 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p-~--~D~v~~~~~ 133 (244)
...++.||||-.+.+.+.+.+.++..+ ++..|+ +.-++.|.++ +++++..+|-+..+. . .|++++.-+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~-~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPAST-AVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcce-EEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 345599999999999999999999888 999998 7666666542 889999999988743 3 388876654
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
= -.-...+|.+-.+.|+.=-++++. +. -...++++|+.+.+|.+
T Consensus 95 G----G~lI~~ILee~~~~l~~~~rlILQ-----Pn---------------------------~~~~~LR~~L~~~~~~I 138 (226)
T COG2384 95 G----GTLIREILEEGKEKLKGVERLILQ-----PN---------------------------IHTYELREWLSANSYEI 138 (226)
T ss_pred c----HHHHHHHHHHhhhhhcCcceEEEC-----CC---------------------------CCHHHHHHHHHhCCcee
Confidence 3 244567777777777544455551 11 01557799999999998
Q ss_pred EEEEEc
Q 041308 214 LRAFIS 219 (244)
Q Consensus 214 ~~~~~~ 219 (244)
..-+-+
T Consensus 139 ~~E~il 144 (226)
T COG2384 139 KAETIL 144 (226)
T ss_pred eeeeee
Confidence 875444
No 241
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.04 E-value=0.0013 Score=57.58 Aligned_cols=91 Identities=11% Similarity=0.020 Sum_probs=71.2
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC----cceEEEeccccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH----VVDAIFMKWVLT 135 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p----~~D~v~~~~~lh 135 (244)
.+|||.-||+|..++.++++.++.+.+++.|+ +..++.++++ .++++..+|....+. ..|+|.+-- .+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 58999999999999999998665544999999 9888887764 457888888865432 259888765 32
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+ ..++..+.+.+++||.+++.-
T Consensus 125 -s~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 125 -TP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -Cc----HHHHHHHHHhcccCCEEEEEe
Confidence 22 267888999999999999974
No 242
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.03 E-value=0.00024 Score=55.94 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=64.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC------Cc-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI------HV-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~------p~-~D~v~ 129 (244)
.+.++||+=||||.++.+.+.++.. + ++.+|. +..+...+++ .++.++.+|.+..+ .. .|+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~-~-v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAK-S-VVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-S-E-EEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCC-e-EEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 3689999999999999999988743 5 899998 7777766653 46889999976542 12 49999
Q ss_pred eccccccCCHHHHHHHHHHHH--HHcCCCCEEEEe
Q 041308 130 MKWVLTTWTDDECKLIMENYY--KALLAGRKLIAC 162 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~--~~L~pgG~lii~ 162 (244)
+---...-.. ..+++..+. ..|+++|.+++=
T Consensus 120 lDPPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 120 LDPPYAKGLY--YEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp E--STTSCHH--HHHHHHHHHHTTSEEEEEEEEEE
T ss_pred ECCCcccchH--HHHHHHHHHHCCCCCCCEEEEEE
Confidence 8866543221 245666666 788888877653
No 243
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.97 E-value=0.0022 Score=54.38 Aligned_cols=150 Identities=9% Similarity=-0.016 Sum_probs=97.1
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC---------CCeeEEeCCCCC-CCCc---------
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI---------PEVTHIGGDMFK-SIHV--------- 124 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~---------~~i~~~~gd~~~-~~p~--------- 124 (244)
.+...|+-+|||--.-+-.+-.. ++.+ +.-+|.|++++.-++. .++++++.|+++ +++.
T Consensus 91 ~g~~qvViLgaGLDTRayRl~~~-~~~~-vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~ 168 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRLDWP-KGTR-VFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDR 168 (297)
T ss_pred hcccEEEEeccccccceeecCCC-CCCe-EEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCc
Confidence 34689999999976655544321 2466 7888889999876653 378999999995 4442
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCch--HHhhhhhcccHhhhhhhccCceecCHH
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNES--QRTRALLEGDIFVMTIYRAKGKHKTEQ 200 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~t~~ 200 (244)
.-++++..++-.+++++..++|++|...+.||..++............. +... .......... ....-......
T Consensus 169 ~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~e~~~~~~~~~ 246 (297)
T COG3315 169 SRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAAR-KTMRGEDLDR-GELVYFGDDPA 246 (297)
T ss_pred CCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhh-hhcccccccc-ccceeccCCHH
Confidence 1478899999999999999999999999999988887543111110000 0000 0000000000 00111223578
Q ss_pred HHHHHHHhCCCCeEEEE
Q 041308 201 EFKQLGFSTGFPHLRAF 217 (244)
Q Consensus 201 e~~~ll~~aGf~~~~~~ 217 (244)
++..++.+.||......
T Consensus 247 e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 247 EIETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHHHhcCEEEEecC
Confidence 99999999999988763
No 244
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.95 E-value=0.0012 Score=55.03 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=72.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCC---CCc--ce
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKS---IHV--VD 126 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~---~p~--~D 126 (244)
..++.++|-||+|.|.+.+...+. +.+.++..+|+ .++++..+++ +++....||-+.. .+. .|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457799999999999999998866 77665888999 8888887763 7899999986653 433 39
Q ss_pred EEEeccccccCCHH--HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 127 AIFMKWVLTTWTDD--ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 127 ~v~~~~~lh~~~~~--~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+|+.-..=---+.. -....+.-+.++|||||++++...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 88854221001111 123456778899999999998753
No 245
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.0014 Score=53.30 Aligned_cols=99 Identities=20% Similarity=0.318 Sum_probs=75.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCC----CCeEEEeec-hHHHHhCC-----CCCC--eeEEeCCCCCC---CCcc--
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCF----ICEGINFDL-PEVVAKAP-----SIPE--VTHIGGDMFKS---IHVV-- 125 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~~D~-~~~i~~a~-----~~~~--i~~~~gd~~~~---~p~~-- 125 (244)
..+...++|+|+|+-.=++.+++.+.+ .+ .+-+|+ +.+++... +++. +.-+++|+... +|..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~r-yvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~ 154 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLR-YVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGR 154 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcce-eeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCe
Confidence 345789999999999888888877654 67 788998 66654332 2354 44466887654 3432
Q ss_pred -eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 126 -DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 126 -D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
=.+++...+.+++++++..+|.+++.+|+||-++++-
T Consensus 155 Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 155 RLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3466778999999999999999999999999998883
No 246
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0075 Score=49.81 Aligned_cols=117 Identities=16% Similarity=0.127 Sum_probs=80.4
Q ss_pred HHHHHHccccc----chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------
Q 041308 41 MRKAMSRVFVP----FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------ 108 (244)
Q Consensus 41 f~~~~~~~~~~----~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------ 108 (244)
|-.++...++- -...++..++ .+++.+|++-|.|+|.++-++++.. |-.+ +.-+|. ....+.|++.
T Consensus 78 WTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGh-l~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 78 WTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGH-LYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred hhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcc-eEEEEecHHHHHHHHHHHHHhCC
Confidence 44455444442 2455778888 8999999999999999999999875 6677 888887 5555555542
Q ss_pred -CCeeEEeCCCCCC-CCc----ceEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecccC
Q 041308 109 -PEVTHIGGDMFKS-IHV----VDAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEPVL 166 (244)
Q Consensus 109 -~~i~~~~gd~~~~-~p~----~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~~~ 166 (244)
+++++...|.-.. ++. +|+|++-.. .+. ..+-.++++||.+ |+++...+++
T Consensus 156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlP----aPw---~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIKSLKADAVFLDLP----APW---EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred CcceEEEEeecccCCccccccccceEEEcCC----Chh---hhhhhhHHHhhhcCceEEeccHHH
Confidence 7899999998765 443 598886532 233 3345555577875 4777765544
No 247
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.77 E-value=0.0036 Score=49.94 Aligned_cols=98 Identities=18% Similarity=0.168 Sum_probs=54.5
Q ss_pred cceEEEEcCCccHHHHHHHH---Hc-CCCCeEEEeec-h-HHHHhCCCC----CCeeEEeCCCCCC--C-C------cce
Q 041308 66 VKRLVDVGGSAGDCLRIILQ---KH-CFICEGINFDL-P-EVVAKAPSI----PEVTHIGGDMFKS--I-H------VVD 126 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~---~~-p~~~~~~~~D~-~-~~i~~a~~~----~~i~~~~gd~~~~--~-p------~~D 126 (244)
+..|+++|.-.|..+...++ .. ++.+ ++++|+ . ..-..+.+. +||+++.||..++ + + ..+
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~-VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGK-VIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---E-EEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCce-EEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 59999999888887766554 33 6677 999998 2 222222233 8999999998765 1 1 122
Q ss_pred -EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 127 -AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 127 -~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
++++-..-|... . +.+.|+.....++||+++++-|...
T Consensus 112 ~vlVilDs~H~~~-h-vl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVILDSSHTHE-H-VLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp SEEEEESS----S-S-HHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ceEEEECCCccHH-H-HHHHHHHhCccCCCCCEEEEEeccc
Confidence 233333333322 2 4677888999999999999977644
No 248
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.00075 Score=51.29 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=64.7
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------CCeeEEeCCCCCC--C-C--cceEEE
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------PEVTHIGGDMFKS--I-H--VVDAIF 129 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------~~i~~~~gd~~~~--~-p--~~D~v~ 129 (244)
+.+||++|+| ||..+..++...|.-. +-..|- ...++..++. .++.+..-+.... + . ..|.|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~-v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSS-VWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCce-EEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 4789999999 6666677776777766 777786 5555544431 4454444333322 1 1 249999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+...+. =++-...+++-|.+.|+|.|+-++..+
T Consensus 109 aADClF--fdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 109 AADCLF--FDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred eccchh--HHHHHHHHHHHHHHHhCcccceeEecC
Confidence 998873 245567889999999999998776554
No 249
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.65 E-value=0.0039 Score=52.59 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=69.5
Q ss_pred cceEEEEcCCccHHHHHHHHHc--------------------CCCCeEEEeec-h--HHHHhCCC---------------
Q 041308 66 VKRLVDVGGSAGDCLRIILQKH--------------------CFICEGINFDL-P--EVVAKAPS--------------- 107 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~~D~-~--~~i~~a~~--------------- 107 (244)
..+||.||||.|.-..+++..+ +.++ ++.+|+ + .+++....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~-itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLS-ITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcce-EEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 3799999999988777776654 2256 899997 3 33322211
Q ss_pred --------CCCeeEEeCCCCCC-C---------CcceEEEeccccccC---CHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 108 --------IPEVTHIGGDMFKS-I---------HVVDAIFMKWVLTTW---TDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 108 --------~~~i~~~~gd~~~~-~---------p~~D~v~~~~~lh~~---~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.-+++|.+.|+++. . |..++|.+-++++.+ +-.+..++|.++-..++||..|+|+|.
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 02478999999865 1 123778777776542 234567899999999999999999986
No 250
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.64 E-value=0.024 Score=49.73 Aligned_cols=126 Identities=13% Similarity=0.143 Sum_probs=71.9
Q ss_pred HHHHHHcccccchHHHhccCC--CCC-CcceEEEEcCCccHHHHHHHHH---------------cCCCCeEEEeech---
Q 041308 41 MRKAMSRVFVPFMTSVLDGYD--GFK-GVKRLVDVGGSAGDCLRIILQK---------------HCFICEGINFDLP--- 99 (244)
Q Consensus 41 f~~~~~~~~~~~~~~l~~~~~--~~~-~~~~vLDvG~G~G~~~~~l~~~---------------~p~~~~~~~~D~~--- 99 (244)
+|+.+.....++.++.++... ... +.-+|+|+|||+|.++..+... .|+++ +..-|+|
T Consensus 36 ~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~q-v~~nDLP~ND 114 (386)
T PLN02668 36 AQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFS-AFFSDLPSND 114 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcce-EEecCCCCCC
Confidence 444444444444444433321 112 3569999999999776544321 24566 7666765
Q ss_pred -----HHHHhCC------------CCCC---eeEEeCCCCCC-CCcc--eEEEeccccccCCH--H--------------
Q 041308 100 -----EVVAKAP------------SIPE---VTHIGGDMFKS-IHVV--DAIFMKWVLTTWTD--D-------------- 140 (244)
Q Consensus 100 -----~~i~~a~------------~~~~---i~~~~gd~~~~-~p~~--D~v~~~~~lh~~~~--~-------------- 140 (244)
..+..-+ ...+ +.-+.|.|... +|.. +++++.+.+|.++. +
T Consensus 115 FNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~ 194 (386)
T PLN02668 115 FNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGR 194 (386)
T ss_pred HHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCc
Confidence 1111100 0011 23345778776 7875 99999999998772 1
Q ss_pred --------H------------HHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 141 --------E------------CKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 141 --------~------------~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
. ...+|+-=++-|.|||++++.=...+
T Consensus 195 iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 195 VFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred eEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCC
Confidence 1 12244444566899999999865554
No 251
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.61 E-value=0.002 Score=54.23 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=69.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCCC------cceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSIH------VVDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~p------~~D~v~ 129 (244)
...+|||+=|=||.++.+.+..+ ..+ ++.+|. ...++.++++ .+++++.+|+++.+. ..|+|+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~-v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKE-VVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESE-EEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999887643 335 899999 8888888763 689999999987532 249998
Q ss_pred ecccc---ccCC-HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 130 MKWVL---TTWT-DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 130 ~~~~l---h~~~-~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+---- ..+. ...-.++++.+.+.|+|||.++++.+
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 64211 1111 22346789999999999999987665
No 252
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.59 E-value=0.00066 Score=51.19 Aligned_cols=39 Identities=33% Similarity=0.358 Sum_probs=36.4
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|...|++.|++-++-..+++++++.|||||+|-|.=
T Consensus 48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 499999999999999999999999999999999998863
No 253
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.0034 Score=56.00 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=70.0
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS--- 121 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~--- 121 (244)
+.+.+.+.++ ..+..+++|+=||.|.++..++++.. + ++++++ +..++.|+++ .+++|+.+|..+-
T Consensus 281 l~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~~--~-V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 281 LYETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRVK--K-VHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHh-hcCCCEEEEeccCCChhhhhhcccCC--E-EEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 3444555555 55678999999999999999995543 3 999999 9999988864 6799999998664
Q ss_pred CC---cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 122 IH---VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 122 ~p---~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.. ..|+|+.---=-...+ .+++.+. .++|-..++|
T Consensus 357 ~~~~~~~d~VvvDPPR~G~~~----~~lk~l~-~~~p~~IvYV 394 (432)
T COG2265 357 WWEGYKPDVVVVDPPRAGADR----EVLKQLA-KLKPKRIVYV 394 (432)
T ss_pred ccccCCCCEEEECCCCCCCCH----HHHHHHH-hcCCCcEEEE
Confidence 21 2388886533333332 3444444 3567777776
No 254
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.54 E-value=0.0057 Score=51.91 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=56.5
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFK 120 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~ 120 (244)
+.+++++.+. ..++..++|.=+|.|..+..+++..|+.+ ++++|. +.+++.+++. .|+.++.+++.+
T Consensus 8 ll~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~-vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 8 LLDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGR-LIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred hHHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4567788776 66778999999999999999999987788 999999 9999888753 589999888854
No 255
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.51 E-value=0.0061 Score=52.44 Aligned_cols=98 Identities=22% Similarity=0.137 Sum_probs=77.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC---cceEEEecc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---VVDAIFMKW 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---~~D~v~~~~ 132 (244)
.++.+|||.=+|.|.+++.+++.. ..+ ++++|+ |..++..+++ .++..+.||..+-.+ .+|-|++.+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-Cce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 457999999999999999999764 456 899999 9888877753 568999999977543 379999886
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
.- .+.+++-.+.+.+++||.+...+.+..+.
T Consensus 265 p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 265 PK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred CC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 53 12467778888899999999988865544
No 256
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.032 Score=48.62 Aligned_cols=112 Identities=18% Similarity=0.142 Sum_probs=75.3
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC--CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CC
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF--ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IH 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p 123 (244)
....++ ..++.+|||.+++.|.=+.++++.-.+ .. ++.+|. +.-+...+.+ .++.++..|.... .+
T Consensus 148 ~a~~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~i-V~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~ 225 (355)
T COG0144 148 PALVLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAI-VVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP 225 (355)
T ss_pred HHHHcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCce-EEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc
Confidence 334455 677799999999999999999988765 34 589998 6555555442 4566667665321 22
Q ss_pred c---ceEEEec------ccc-------ccCCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 124 V---VDAIFMK------WVL-------TTWTDDE-------CKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 124 ~---~D~v~~~------~~l-------h~~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
. +|.|++- .++ ..++..+ ...+|+.+.+.|||||.|+-..+.+...
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 2 4666632 122 2333321 2468999999999999999988876654
No 257
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.41 E-value=0.0038 Score=55.77 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=64.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hH----HHHhCCCCCCeeEEeCCCCCC---CCc-ceEEEeccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PE----VVAKAPSIPEVTHIGGDMFKS---IHV-VDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~----~i~~a~~~~~i~~~~gd~~~~---~p~-~D~v~~~~~ 133 (244)
......|+|..+|.|.+|.+|.+. | +.++.. |. .+...-++.-|.. -.|.-+. .|. .|++...++
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~----VWVMNVVP~~~~ntL~vIydRGLIG~-yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P----VWVMNVVPVSGPNTLPVIYDRGLIGV-YHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C----ceEEEecccCCCCcchhhhhcccchh-ccchhhccCCCCcchhheehhhh
Confidence 566789999999999999999753 2 444554 32 2222222222332 2355444 454 399998888
Q ss_pred cccCCHH-HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 134 LTTWTDD-ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 134 lh~~~~~-~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+-.+.+. +...+|-++-|.|+|||.++|-|.
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 8665422 356789999999999999999664
No 258
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.0021 Score=57.36 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=46.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS 121 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~ 121 (244)
++....+||+.||||.+...+++... + ++++++ |..++.|+.+ .+++|++|...+.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~--~-ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVK--R-VIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcccc--c-eeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 66778999999999999999997654 4 899998 9888888864 7899999955443
No 259
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.023 Score=44.64 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=66.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC------cceEEEe
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH------VVDAIFM 130 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p------~~D~v~~ 130 (244)
.+.++||+=+|+|.++.+.+.++.. + ++.+|. .......+++ .++.+...|...-++ ..|+|++
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~-~-~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA-R-VVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc-e-EEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 3689999999999999999988643 5 888897 6665555542 678888888763221 2599998
Q ss_pred cccccc-CCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 131 KWVLTT-WTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 131 ~~~lh~-~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
---.+. +.+.+...+.-.-...|+|+|.+++=
T Consensus 121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 121 DPPYAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 877762 22222222232345679999988863
No 260
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.38 E-value=0.0012 Score=57.46 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=48.3
Q ss_pred HHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeE
Q 041308 41 MRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTH 113 (244)
Q Consensus 41 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~ 113 (244)
|-+.-......+.+.+++.++ .++. ++||+-||.|.++..+++... + +++++. +.+++.|+++ .+++|
T Consensus 174 FfQvN~~~~~~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~-V~gvE~~~~av~~A~~Na~~N~i~n~~f 248 (352)
T PF05958_consen 174 FFQVNPEQNEKLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--K-VIGVEIVEEAVEDARENAKLNGIDNVEF 248 (352)
T ss_dssp ---SBHHHHHHHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--E-EEEEES-HHHHHHHHHHHHHTT--SEEE
T ss_pred CccCcHHHHHHHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--e-EEEeeCCHHHHHHHHHHHHHcCCCcceE
Confidence 444333333344555666666 4444 899999999999999996653 3 999999 9999988853 78999
Q ss_pred EeCCC
Q 041308 114 IGGDM 118 (244)
Q Consensus 114 ~~gd~ 118 (244)
+.++.
T Consensus 249 ~~~~~ 253 (352)
T PF05958_consen 249 IRGDA 253 (352)
T ss_dssp EE--S
T ss_pred EEeec
Confidence 88765
No 261
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.33 E-value=0.044 Score=44.72 Aligned_cols=134 Identities=12% Similarity=0.024 Sum_probs=72.2
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc-----
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV----- 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~----- 124 (244)
+.+..+ -.+.+||-+| -.-..+++++-.++.-+ ++++|+ +.+++..++. -+|+....|+.+++|+
T Consensus 37 ~~~~gd--L~gk~il~lG-DDDLtSlA~al~~~~~~-I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~ 112 (243)
T PF01861_consen 37 MAERGD--LEGKRILFLG-DDDLTSLALALTGLPKR-ITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGK 112 (243)
T ss_dssp HHHTT---STT-EEEEES--TT-HHHHHHHHT--SE-EEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-
T ss_pred HHhcCc--ccCCEEEEEc-CCcHHHHHHHhhCCCCe-EEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcC
Confidence 444444 3458999999 44455566665555567 999999 8888776642 3499999999999885
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCC-EEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGR-KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK 203 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG-~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~ 203 (244)
+|++++--. ++.+-..-++.+..++||.-| ..++ -....+. ++ + ...++.
T Consensus 113 fD~f~TDPP---yT~~G~~LFlsRgi~~Lk~~g~~gy~-~~~~~~~--s~---------~--------------~~~~~Q 163 (243)
T PF01861_consen 113 FDVFFTDPP---YTPEGLKLFLSRGIEALKGEGCAGYF-GFTHKEA--SP---------D--------------KWLEVQ 163 (243)
T ss_dssp BSEEEE------SSHHHHHHHHHHHHHTB-STT-EEEE-EE-TTT----H---------H--------------HHHHHH
T ss_pred CCEEEeCCC---CCHHHHHHHHHHHHHHhCCCCceEEE-EEecCcC--cH---------H--------------HHHHHH
Confidence 399987754 344667788999999999755 4333 2211110 00 0 012456
Q ss_pred HHHHhCCCCeEEEEEccce
Q 041308 204 QLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 204 ~ll~~aGf~~~~~~~~~~~ 222 (244)
+.+.+.||-+.++.+-++.
T Consensus 164 ~~l~~~gl~i~dii~~Fn~ 182 (243)
T PF01861_consen 164 RFLLEMGLVITDIIPDFNR 182 (243)
T ss_dssp HHHHTS--EEEEEEEEEEE
T ss_pred HHHHHCCcCHHHHHhhhcc
Confidence 7777888888887665543
No 262
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.033 Score=48.52 Aligned_cols=110 Identities=10% Similarity=-0.015 Sum_probs=73.6
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC----CC----------------------------------eEE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF----IC----------------------------------EGI 94 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~----~~----------------------------------~~~ 94 (244)
+..++..-. |.+...++|-=||+|+++++.+...++ .. ..+
T Consensus 180 AaAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 344555554 888899999999999999998877642 11 156
Q ss_pred Eeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC--cceEEEecccccc-CCHHHHHH-HHH----HHHHHcCCCC
Q 041308 95 NFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH--VVDAIFMKWVLTT-WTDDECKL-IME----NYYKALLAGR 157 (244)
Q Consensus 95 ~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p--~~D~v~~~~~lh~-~~~~~~~~-~l~----~~~~~L~pgG 157 (244)
++|+ +.+++.|+.+ +.|+|.++|+..- -| +.|+|+++---.- +.++.... +-+ .+.+.++--+
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws 338 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS 338 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc
Confidence 9999 9999999875 6799999998654 22 3499998754321 33332222 333 4445555556
Q ss_pred EEEEec
Q 041308 158 KLIACE 163 (244)
Q Consensus 158 ~lii~d 163 (244)
++++..
T Consensus 339 ~~v~tt 344 (381)
T COG0116 339 RYVFTT 344 (381)
T ss_pred eEEEEc
Confidence 777643
No 263
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.25 E-value=0.0021 Score=52.58 Aligned_cols=98 Identities=11% Similarity=0.043 Sum_probs=67.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc--ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV--VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~--~D~v~~~~~lh 135 (244)
+.+.+|+|||||.=-++.......|+.+ +++.|+ ..+++..++. .+.++...|.....|. .|+.++.-++|
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~-Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGAT-YIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-E-EEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcE-EEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 4579999999999988888787777888 999999 8888777653 6778888899888554 59999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.+...+. ..--++.+.++. -.++|.-+
T Consensus 183 ~le~q~~-g~g~~ll~~~~~-~~~vVSfP 209 (251)
T PF07091_consen 183 CLERQRR-GAGLELLDALRS-PHVVVSFP 209 (251)
T ss_dssp HHHHHST-THHHHHHHHSCE-SEEEEEEE
T ss_pred HHHHHhc-chHHHHHHHhCC-CeEEEecc
Confidence 8776653 333445555533 45555444
No 264
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.032 Score=47.03 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=97.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc--CCCCeEEEeechHHHHhCCC---C-------------------------CCee
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH--CFICEGINFDLPEVVAKAPS---I-------------------------PEVT 112 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~~~~i~~a~~---~-------------------------~~i~ 112 (244)
..+...|+-+|||.-...-.+...+ +.++ ++-+|-|++++.--. . ++..
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~-fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~ 163 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVK-FIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYH 163 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcce-EEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCcee
Confidence 4567899999999999999999887 6667 888887666542211 0 2334
Q ss_pred EEeCCCCCC------CCc-------ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh
Q 041308 113 HIGGDMFKS------IHV-------VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL 179 (244)
Q Consensus 113 ~~~gd~~~~------~p~-------~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~ 179 (244)
....|..+. +.. +-+++..-+|-.+++++...+++.+.+.. |.+.+++.|.+.+.++-+.
T Consensus 164 ~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F-~~a~fv~YEQi~~~D~Fg~------ 236 (335)
T KOG2918|consen 164 LIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKF-ENAHFVNYEQINPNDRFGK------ 236 (335)
T ss_pred eeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhC-CcccEEEEeccCCCChHHH------
Confidence 444444311 111 13566777888899999999999998877 6688888999886653211
Q ss_pred hcccHhhhh--hhccC-ceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 180 LEGDIFVMT--IYRAK-GKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 180 ~~~d~~~~~--~~~~~-~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.|-.+... ....| -...|.+..++-+.++||+.+.+.++.
T Consensus 237 -vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ 279 (335)
T KOG2918|consen 237 -VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMN 279 (335)
T ss_pred -HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhHH
Confidence 11111110 00111 233478899999999999999987763
No 265
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.19 E-value=0.13 Score=44.55 Aligned_cols=148 Identities=12% Similarity=0.075 Sum_probs=76.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHH--------c--------CCCCeEEEeechH------------HHHhCCCCCC--ee
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQK--------H--------CFICEGINFDLPE------------VVAKAPSIPE--VT 112 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~--------~--------p~~~~~~~~D~~~------------~i~~a~~~~~--i~ 112 (244)
.++.-+|+|+||.+|.++..+.+. + |.+. +..-|+|. ..+......+ +.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~-v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQ-VFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEE-EEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEE-EEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 456679999999999998876643 1 2345 77778751 1000001123 34
Q ss_pred EEeCCCCCC-CCcc--eEEEeccccccCCH-------------------------HH------------HHHHHHHHHHH
Q 041308 113 HIGGDMFKS-IHVV--DAIFMKWVLTTWTD-------------------------DE------------CKLIMENYYKA 152 (244)
Q Consensus 113 ~~~gd~~~~-~p~~--D~v~~~~~lh~~~~-------------------------~~------------~~~~l~~~~~~ 152 (244)
-+.|.|... +|.. |++++.+.||.++. +. ...+|+.=++=
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 467999887 7875 99999999987762 11 11234444456
Q ss_pred cCCCCEEEEecccCCCCCC------chHHhhhhhcccHhhhhh--------hccCceecCHHHHHHHHHhCCC
Q 041308 153 LLAGRKLIACEPVLPDDSN------ESQRTRALLEGDIFVMTI--------YRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 153 L~pgG~lii~d~~~~~~~~------~~~~~~~~~~~d~~~~~~--------~~~~~~~~t~~e~~~ll~~aGf 211 (244)
|+|||++++.=...++... .-+......+.++..... +..--..++.+|+++.+++.|=
T Consensus 173 Lv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gs 245 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGS 245 (334)
T ss_dssp EEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTS
T ss_pred eccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCC
Confidence 8999999998666555211 011111122223221110 0001234589999999988773
No 266
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.11 E-value=0.0089 Score=50.77 Aligned_cols=66 Identities=24% Similarity=0.219 Sum_probs=50.6
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMF 119 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~ 119 (244)
+.+++++.+. .++...++|.=-|.|..+.++++..|+.+ ++++|. |.+++.+++. +|+.++.++|-
T Consensus 8 ll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~-li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 8 LLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGR-LIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp THHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-E-EEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred cHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCe-EEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 4567777776 67778999999999999999999999988 999999 9999777653 68888888773
No 267
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.97 E-value=0.015 Score=50.48 Aligned_cols=110 Identities=16% Similarity=0.300 Sum_probs=75.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEe---echHHHHhCC-C------------CCCeeEEeCC
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINF---DLPEVVAKAP-S------------IPEVTHIGGD 117 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~---D~~~~i~~a~-~------------~~~i~~~~gd 117 (244)
..+++.+. ..+.....|+|+|.|..+..++....--. -+|+ |-|.-....+ . ...+..+.|+
T Consensus 182 ~si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~-svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gs 259 (419)
T KOG3924|consen 182 RSIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKK-SVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGS 259 (419)
T ss_pred HHHHHHhc-cCCCCcccCCCcccchhhHHHHHhhcccc-ccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccc
Confidence 34666666 77889999999999999988876542222 3344 4322211111 1 1457888898
Q ss_pred CCCC------CCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 118 MFKS------IHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 118 ~~~~------~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
+..+ .+++++|+++++. ++++...+ ++++..-+++|-+++-.+...+.
T Consensus 260 f~~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr-~~eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 260 FLDPKRVTEIQTEATVIFVNNVA--FDPELKLR-SKEILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred cCCHHHHHHHhhcceEEEEeccc--CCHHHHHh-hHHHHhhCCCcceEecccccccc
Confidence 8765 2346999999887 66766555 44899999999999998887773
No 268
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.87 E-value=0.013 Score=47.18 Aligned_cols=100 Identities=20% Similarity=0.242 Sum_probs=68.8
Q ss_pred ccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-----CC---eEEEeechHHHHhCCCCCCeeEEeCCCCCC--C-----
Q 041308 58 DGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-----IC---EGINFDLPEVVAKAPSIPEVTHIGGDMFKS--I----- 122 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~---~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~--~----- 122 (244)
+.++.+.+..+++|++...|.+++-+.++.-. .+ +++.+|+..|. ..+.|.-+++|+.+. .
T Consensus 34 eef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 34 EEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----ccCceEEeecccCCHhHHHHHHH
Confidence 34444667899999999999999999887411 11 27889985552 346777788999765 1
Q ss_pred --C--cceEEEecc-----ccccCCHH----HHHHHHHHHHHHcCCCCEEEE
Q 041308 123 --H--VVDAIFMKW-----VLTTWTDD----ECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 123 --p--~~D~v~~~~-----~lh~~~~~----~~~~~l~~~~~~L~pgG~lii 161 (244)
. .+|+|++-. -+|.++.- -....|.-...+|||||.|+-
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 1 159998753 45665532 233456667789999999974
No 269
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.84 E-value=0.064 Score=46.19 Aligned_cols=92 Identities=20% Similarity=0.109 Sum_probs=66.4
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCC---CCCCCCc-ceEEEecccccc
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGD---MFKSIHV-VDAIFMKWVLTT 136 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd---~~~~~p~-~D~v~~~~~lh~ 136 (244)
.++.++|+=+|.| .|..+..+++..- .+ ++++|. ++-.+.|++...-.++... ..+.... +|+++..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~-Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AE-VIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-Ce-EEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h-
Confidence 5678899888865 7778889998654 78 999999 8888888887555555543 2222222 587775433 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
..+....+.|++||+++++-..
T Consensus 240 -------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 -------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -------hhHHHHHHHHhcCCEEEEECCC
Confidence 3467888899999999998765
No 270
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.76 E-value=0.051 Score=48.52 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=71.4
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC-----CCCCeeEEeCCCCCC-CCc--ceEEEeccccccCC
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP-----SIPEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWT 138 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~-----~~~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~ 138 (244)
++|-+|||.-.+...+.+.+-+ . ++.+|. +-+++... ..+-+.+...|+... ++. .|+|+....++++-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~-d-I~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE-D-ITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC-C-ceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 9999999999888888876432 3 667787 54444332 336789999999776 665 49999999998855
Q ss_pred HHH--------HHHHHHHHHHHcCCCCEEEEeccc
Q 041308 139 DDE--------CKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 139 ~~~--------~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.++ +...+.++.|+|+|||+++.+...
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 332 223578999999999999988774
No 271
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.73 E-value=0.0064 Score=48.69 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=46.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS 121 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~ 121 (244)
....|+|.-||.|..++.++.++|. ++.+|+ |--|..|+.+ +||+|++||+++.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL 155 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence 4678999999999999999999886 888898 8888888764 7999999999875
No 272
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.56 E-value=0.0046 Score=43.99 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=42.9
Q ss_pred eEEEecccc---c-cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 126 DAIFMKWVL---T-TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 126 D~v~~~~~l---h-~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
|+|++-.+. | ++-|+-...+|+++++.|+|||.+++ |+ .+. ..+......... ... ........+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-Ep----Q~w-~sY~~~~~~~~~-~~~--n~~~i~lrP~~ 73 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EP----QPW-KSYKKAKRLSEE-IRE--NYKSIKLRPDQ 73 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E-------H-HHHHTTTTS-HH-HHH--HHHH----GGG
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eC----CCc-HHHHHHhhhhHH-HHh--HHhceEEChHH
Confidence 777766554 2 23477788999999999999999997 22 100 111111111111 000 12233345667
Q ss_pred HHHHHHh--CCCCeEEEEEcc
Q 041308 202 FKQLGFS--TGFPHLRAFISI 220 (244)
Q Consensus 202 ~~~ll~~--aGf~~~~~~~~~ 220 (244)
+.+.|.+ -||+.++.....
T Consensus 74 F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHTSTTT---EEEEE---
T ss_pred HHHHHHhcccceEEEEEcccC
Confidence 8888887 599988755443
No 273
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.54 E-value=0.012 Score=41.67 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=25.5
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL 98 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~ 98 (244)
.+...++|+|||.|.+.--|.+..- + +.++|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy--~-G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGY--P-GWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCC--C-cccccc
Confidence 3567999999999999888887643 4 788885
No 274
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.48 E-value=0.079 Score=43.17 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=70.4
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-----hHHHHhCCCCCCeeEEeCCCCCCCC------cceEEEe
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-----PEVVAKAPSIPEVTHIGGDMFKSIH------VVDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-----~~~i~~a~~~~~i~~~~gd~~~~~p------~~D~v~~ 130 (244)
+++..+||-+|+++|....++.... |+-- +.+++. -..+..|+++.+|--+.-|+..+.. --|+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~-VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGC-VYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCce-EEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 6788999999999999999998864 5555 566653 3667778888888777788877622 1276653
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
- +- .++++..+.-|+.--||+||.++|.
T Consensus 233 D-va---qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 233 D-VA---QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred c-CC---CchhhhhhhhhhhhhhccCCeEEEE
Confidence 3 32 2456667778899999999999885
No 275
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.40 E-value=0.038 Score=46.48 Aligned_cols=67 Identities=25% Similarity=0.212 Sum_probs=57.4
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMF 119 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~ 119 (244)
+.+++++.+. .++...++|+-=|.|..+..+++++|.....+++|. |.+++.|++. +|+.++.++|.
T Consensus 11 Ll~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 11 LLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 4667888887 777899999999999999999999986544999999 9999999863 68999988874
No 276
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.35 E-value=0.087 Score=47.57 Aligned_cols=126 Identities=20% Similarity=0.223 Sum_probs=86.4
Q ss_pred cccccccCchHHHHHHHHHHcccccchHHHhccCC--CCCCcceEEEEcCCccHHHHHHHHHc----CCCCeEEEeec-h
Q 041308 27 AYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYD--GFKGVKRLVDVGGSAGDCLRIILQKH----CFICEGINFDL-P 99 (244)
Q Consensus 27 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~--~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~~D~-~ 99 (244)
-||..++|+-..+.|++|+.. .|.+..+ ..+....|+-+|+|-|-++.+.++.- -.++ .++++- |
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~~-------AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVk-lyavEKNP 405 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAILK-------ALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVK-LYAVEKNP 405 (649)
T ss_pred hhhhhhccchHHHHHHHHHHH-------HHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceE-EEEEecCc
Confidence 377788899888899988743 3444433 12235788999999999988777653 3455 788887 7
Q ss_pred HHHHhCCCC------CCeeEEeCCCCCCC-C-c-ceEEEeccccccCCHHH-HHHHHHHHHHHcCCCCEEEE
Q 041308 100 EVVAKAPSI------PEVTHIGGDMFKSI-H-V-VDAIFMKWVLTTWTDDE-CKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 100 ~~i~~a~~~------~~i~~~~gd~~~~~-p-~-~D~v~~~~~lh~~~~~~-~~~~l~~~~~~L~pgG~lii 161 (244)
+.+-..... .+++++..||.+-. | + +|++++. .|.-|.|.+ ....|.-+-+.|||.|..|=
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 666544431 78999999997753 3 2 5887755 334444332 44678889999999976653
No 277
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=95.07 E-value=0.034 Score=43.72 Aligned_cols=84 Identities=14% Similarity=0.199 Sum_probs=61.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC---------CCeeEEeCCCCCC-----CC------c
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI---------PEVTHIGGDMFKS-----IH------V 124 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~---------~~i~~~~gd~~~~-----~p------~ 124 (244)
+...|+-+|||--.....+....++++ +.-+|.|++++..++. .+++++..|+.++ +. .
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~-~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVR-WFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEE-EEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCcEEEEcCCCCCchHHHhhccccceE-EEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 445999999999999999988777777 8888999888766642 2367899999864 12 1
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHH
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENY 149 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~ 149 (244)
.-++++..++..+++++...+|+.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 2578889999999999998888876
No 278
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.94 E-value=0.033 Score=41.68 Aligned_cols=105 Identities=16% Similarity=0.069 Sum_probs=64.8
Q ss_pred EEEeec-hHHHHhCCCC-------CCeeEEeCCCCC---CCCc--ceEEEecccc-----ccC--CHHHHHHHHHHHHHH
Q 041308 93 GINFDL-PEVVAKAPSI-------PEVTHIGGDMFK---SIHV--VDAIFMKWVL-----TTW--TDDECKLIMENYYKA 152 (244)
Q Consensus 93 ~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~---~~p~--~D~v~~~~~l-----h~~--~~~~~~~~l~~~~~~ 152 (244)
+.++|+ ++.++..+++ +|++++..+-.+ .++. .|+++++.-. |.+ ..+...+.++.+.+.
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 889999 8888887753 679998865432 2555 3888866433 111 144577899999999
Q ss_pred cCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 153 LLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 153 L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
|+|||.+.++=..-.+.+ . .+. ....+|.+-|.+--|.+.....+
T Consensus 82 L~~gG~i~iv~Y~GH~gG--~-eE~-------------------~av~~~~~~L~~~~~~V~~~~~~ 126 (140)
T PF06962_consen 82 LKPGGIITIVVYPGHPGG--K-EES-------------------EAVEEFLASLDQKEFNVLKYQFI 126 (140)
T ss_dssp EEEEEEEEEEE--STCHH--H-HHH-------------------HHHHHHHHTS-TTTEEEEEEEES
T ss_pred hccCCEEEEEEeCCCCCC--H-HHH-------------------HHHHHHHHhCCcceEEEEEEEcc
Confidence 999999998765322221 0 000 11345556666677888777665
No 279
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.54 E-value=0.083 Score=42.32 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=61.5
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC---------------------------------
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI--------------------------------- 108 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~--------------------------------- 108 (244)
+++-++-|-+||.|.++.-+.-.++ .++.+++-|+ +.+++.|+++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 5668999999999998776665554 4455788899 9899888762
Q ss_pred ---------------CCeeEEeCCCCCCCC-------c-ceEEEecccccc---CC----HHHHHHHHHHHHHHcCCCCE
Q 041308 109 ---------------PEVTHIGGDMFKSIH-------V-VDAIFMKWVLTT---WT----DDECKLIMENYYKALLAGRK 158 (244)
Q Consensus 109 ---------------~~i~~~~gd~~~~~p-------~-~D~v~~~~~lh~---~~----~~~~~~~l~~~~~~L~pgG~ 158 (244)
......+.|.|++-+ . .|+||.-.-..+ |. .+-...+|+.++.+|.+++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 125677889988521 2 288886544433 22 33467899999999955555
Q ss_pred EEEec
Q 041308 159 LIACE 163 (244)
Q Consensus 159 lii~d 163 (244)
+++++
T Consensus 210 V~v~~ 214 (246)
T PF11599_consen 210 VAVSD 214 (246)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 55543
No 280
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.37 E-value=0.27 Score=40.50 Aligned_cols=98 Identities=15% Similarity=0.027 Sum_probs=58.9
Q ss_pred CC-CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC------------CCeeEEeCCCCCC------CC
Q 041308 63 FK-GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI------------PEVTHIGGDMFKS------IH 123 (244)
Q Consensus 63 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~------------~~i~~~~gd~~~~------~p 123 (244)
++ ...+||++|+|+|...+..+. ....+ ++.-|.+..++..+.+ ..+.+...+..++ .|
T Consensus 83 ~~~~~~~vlELGsGtglvG~~aa~-~~~~~-v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~ 160 (248)
T KOG2793|consen 83 FKTKYINVLELGSGTGLVGILAAL-LLGAE-VVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLP 160 (248)
T ss_pred ccccceeEEEecCCccHHHHHHHH-Hhcce-eccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccC
Confidence 44 456899999999966655554 34556 6666775554433321 2444444333332 33
Q ss_pred c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 ~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
. .|+|+.+.++.+-.. ...+++-++..|-.++.+++.-.
T Consensus 161 ~~~DlilasDvvy~~~~--~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 161 NPFDLILASDVVYEEES--FEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred CcccEEEEeeeeecCCc--chhHHHHHHHHHhcCCeEEEEEe
Confidence 4 599999988865333 23566677777777775555443
No 281
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.99 E-value=0.11 Score=49.20 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=54.2
Q ss_pred cceEEEEcCCccHHHHHHHHHc-------C-----CCCeEEEeec-h---HHHHhCC----------------------C
Q 041308 66 VKRLVDVGGSAGDCLRIILQKH-------C-----FICEGINFDL-P---EVVAKAP----------------------S 107 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~~D~-~---~~i~~a~----------------------~ 107 (244)
.-+|+|+|=|+|.+.....+.. | .++ ++.++. | ..+..+- .
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~-~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLH-FISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEE-EEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 4699999999999877777544 3 456 777775 3 1111110 0
Q ss_pred C-------C--CeeEEeCCCCCCCC---c-ceEEEeccccc-cCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 108 I-------P--EVTHIGGDMFKSIH---V-VDAIFMKWVLT-TWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 108 ~-------~--~i~~~~gd~~~~~p---~-~D~v~~~~~lh-~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
. . ++++..||+.+.++ . .|++++--+-= .-++--...+|+++++.++|||+++-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 0 1 23455577654433 2 47776543221 11111124678888888888888774
No 282
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.35 E-value=0.15 Score=44.79 Aligned_cols=59 Identities=7% Similarity=0.043 Sum_probs=50.8
Q ss_pred CCeeEEeCCCCCC---CCcc--eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 109 PEVTHIGGDMFKS---IHVV--DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 109 ~~i~~~~gd~~~~---~p~~--D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
++++++.+++.+- .|.+ |.+++...+..+++++..+.++++.+.++|||++++-....+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 8999999988664 4443 999999999999999999999999999999999999766444
No 283
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.28 E-value=0.56 Score=41.20 Aligned_cols=99 Identities=16% Similarity=-0.005 Sum_probs=62.8
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCC----CCCC----CCc--ceEEEe
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGD----MFKS----IHV--VDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd----~~~~----~p~--~D~v~~ 130 (244)
..+..+||.+|||+ |..+..+++.....+ ++++|. +...+.+++.....++... +.+. .+. .|+|+-
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~-vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAER-VIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 55678999999987 889999998875435 888887 8788777664223332211 1111 111 376664
Q ss_pred cc-------ccccC--------CHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 131 KW-------VLTTW--------TDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 131 ~~-------~lh~~--------~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.- .+|++ .+. ...++++.+.|+|+|+++++..
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCcccccccccccccccccccCc--hHHHHHHHHHhccCCEEEEEcC
Confidence 31 11111 222 3568889999999999999854
No 284
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.19 E-value=1.6 Score=34.61 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=72.6
Q ss_pred cceEEEEcCCccHHHHHHHHH----cCCCCeEEEeec--hHHHHhCCCCCCeeEEeCCCCCC-CCc---------ceEEE
Q 041308 66 VKRLVDVGGSAGDCLRIILQK----HCFICEGINFDL--PEVVAKAPSIPEVTHIGGDMFKS-IHV---------VDAIF 129 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~~D~--~~~i~~a~~~~~i~~~~gd~~~~-~p~---------~D~v~ 129 (244)
+..|+++|.-.|..++.++.. ....+ |+++|+ ...-..|++.++|.|+.|+-.++ +.. .-+.+
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~k-vl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFK-VLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCce-EEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 589999998888877766653 33466 888886 33334455569999999998776 211 14566
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS 170 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~ 170 (244)
+-..-|+ .+.+.+-|+-....|.-|-++++-|...++.+
T Consensus 149 ilDsdHs--~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHS--MEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCch--HHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 6666666 34456778888888888999999888877664
No 285
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=0.22 Score=37.53 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=67.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p 123 (244)
.+.++..+. -.+..+.+|+|.|.|....+.++.. -.. .+++++ |..+..++-. .+..|..-|+++. +.
T Consensus 61 v~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~-a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 61 VENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRP-AVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred HHHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCc-CCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 444555554 3455899999999999999888765 234 788899 8888777632 5667777788775 55
Q ss_pred cc-eEEEec--cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 124 VV-DAIFMK--WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 124 ~~-D~v~~~--~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
+. .++++. .++. .+-.+++.-|+.+.+++-.-.-+|.
T Consensus 138 dy~~vviFgaes~m~--------dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 138 DYRNVVIFGAESVMP--------DLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ccceEEEeehHHHHh--------hhHHHHHhhCcCCCeEEEEecCCCc
Confidence 54 444322 2221 2233444456778888876665543
No 286
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=92.79 E-value=0.11 Score=45.93 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=54.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC--CCc--ceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS--IHV--VDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~--~p~--~D~v~~~~ 132 (244)
+...+||||.|||.++...++... -. +++++. -+|.+.|++. ++|+++.---.+- .|. +|+++-..
T Consensus 66 gkv~vLdigtGTGLLSmMAvraga-D~-vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGA-DS-VTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcC-Ce-EEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhh
Confidence 345889999999999999888873 35 899998 8888888862 6676654322221 222 36555443
Q ss_pred ccccCCHHHHHHHHHHHHHHcC
Q 041308 133 VLTTWTDDECKLIMENYYKALL 154 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~ 154 (244)
+...+.-+-+..-++++.+.|-
T Consensus 144 fdtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhhccccchhHHHHHHHhc
Confidence 3333322223334555555543
No 287
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=92.69 E-value=0.16 Score=42.90 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=72.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC----CCc-ceEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS----IHV-VDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~----~p~-~D~v~ 129 (244)
..+..+|||.+++.|.=+.++++... ..+ +++.|. +.-+...+++ .++.....|..+. .+. .|.|+
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~-i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGE-IVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSE-EEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhH-HHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhh
Confidence 45678999999999999999998876 456 899998 6665555432 5677776666443 122 47777
Q ss_pred ec------cccccCCH--------------HHHHHHHHHHHHHc----CCCCEEEEecccCCCC
Q 041308 130 MK------WVLTTWTD--------------DECKLIMENYYKAL----LAGRKLIACEPVLPDD 169 (244)
Q Consensus 130 ~~------~~lh~~~~--------------~~~~~~l~~~~~~L----~pgG~lii~d~~~~~~ 169 (244)
+- .++..-++ ..-.++|+++.+.+ ||||+++-..+.+...
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e 225 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE 225 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH
Confidence 42 11221111 11246899999999 9999999887755433
No 288
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=92.59 E-value=0.15 Score=42.47 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCC
Q 041308 79 CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGR 157 (244)
Q Consensus 79 ~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG 157 (244)
++++|.+.++..+ ++++|. +..++.+.+..-+.-...+ .+.+..+|+|+++ .|......+++++...+++|.
T Consensus 1 ~A~aL~~~g~~~~-v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvla-----vP~~~~~~~l~~~~~~~~~~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVE-VYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLA-----VPVSAIEDVLEEIAPYLKPGA 73 (258)
T ss_dssp HHHHHHHTTTTSE-EEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE------S-HHHHHHHHHHHHCGS-TTS
T ss_pred ChHHHHhCCCCeE-EEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEc-----CCHHHHHHHHHHhhhhcCCCc
Confidence 4678888888899 999999 8888888654444433332 1224446998876 455667788888888888876
Q ss_pred EEEE
Q 041308 158 KLIA 161 (244)
Q Consensus 158 ~lii 161 (244)
.+.=
T Consensus 74 iv~D 77 (258)
T PF02153_consen 74 IVTD 77 (258)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
No 289
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.50 E-value=0.9 Score=41.58 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=63.0
Q ss_pred CCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC--------------C------
Q 041308 64 KGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK--------------S------ 121 (244)
Q Consensus 64 ~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~--------------~------ 121 (244)
.++.+|+=+|+| .|..+...++... .+ ++++|. +..++.+++.. .++..-|..+ +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~-V~a~D~~~~rle~aeslG-A~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AI-VRAFDTRPEVAEQVESMG-AEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CE-EEEEeCCHHHHHHHHHcC-CeEEEeccccccccccchhhhcchhHHHHHH
Confidence 457999999999 5777888887764 47 999999 88888887742 2222111100 1
Q ss_pred ------CCcceEEEeccccccCCHHHHHHH-HHHHHHHcCCCCEEEEecc
Q 041308 122 ------IHVVDAIFMKWVLTTWTDDECKLI-MENYYKALLAGRKLIACEP 164 (244)
Q Consensus 122 ------~p~~D~v~~~~~lh~~~~~~~~~~-l~~~~~~L~pgG~lii~d~ 164 (244)
...+|+|+..-..-.-+ ...+ .++..+.+||||.++.+-.
T Consensus 240 ~~~~~~~~gaDVVIetag~pg~~---aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIPGKP---APKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHhccCCCCEEEECCCCCccc---CcchHHHHHHHhcCCCCEEEEEcc
Confidence 12359888665432211 1244 5999999999999988754
No 290
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=92.38 E-value=0.45 Score=39.97 Aligned_cols=125 Identities=13% Similarity=0.013 Sum_probs=74.4
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-----CCcceEEEeccccccCCH--
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-----IHVVDAIFMKWVLTTWTD-- 139 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-----~p~~D~v~~~~~lh~~~~-- 139 (244)
+++|+-||.|.+...+.+.. .+.+.++|. +..++..+.+-.-.+..+|+.+- .+..|+++...-+..++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999999998765 442577898 87777776652223566777553 123499998776654442
Q ss_pred ------HHHHHHHHHHHHHcCC-CCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCC
Q 041308 140 ------DECKLIMENYYKALLA-GRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 140 ------~~~~~~l~~~~~~L~p-gG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 212 (244)
+..-.++.++.+.++- .-+++++|.+..-.. .........+.+.|++.|+.
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~----------------------~~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLT----------------------HDNGNTLKVILNTLEELGYN 137 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhc----------------------cCchHHHHHHHHHHHhCCcE
Confidence 1122244444333332 224666676533210 00112356778888999988
Q ss_pred eEEE
Q 041308 213 HLRA 216 (244)
Q Consensus 213 ~~~~ 216 (244)
+...
T Consensus 138 ~~~~ 141 (275)
T cd00315 138 VYWK 141 (275)
T ss_pred EEEE
Confidence 6553
No 291
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.22 E-value=1.4 Score=37.74 Aligned_cols=97 Identities=11% Similarity=0.016 Sum_probs=66.0
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCC-----CCC----CCc--ceE
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDM-----FKS----IHV--VDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~-----~~~----~p~--~D~ 127 (244)
++.++++|=+|+| .|.++...++.....+ +++.|+ +..++.|++. ..+......- .+. +.. .|+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~-VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASD-VVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCc-EEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCe
Confidence 6788999999999 5777888888876667 999999 9999999984 1111111111 000 111 366
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
.+-+..++ ..++....++|+||.++++.+..+.
T Consensus 246 ~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 246 TFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred EEEccCch--------HHHHHHHHHhccCCEEEEeccCCCc
Confidence 66555543 4466778899999999998875543
No 292
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.05 E-value=0.34 Score=41.11 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=41.5
Q ss_pred cceEEEEcCCccH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeC----CCCCCCC---c-ceE
Q 041308 66 VKRLVDVGGSAGD-CLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGG----DMFKSIH---V-VDA 127 (244)
Q Consensus 66 ~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~g----d~~~~~p---~-~D~ 127 (244)
.-++||||+|.-. +.+--++.+ +++ +++.|+ +..++.|+++ .+|+++.. +++..+. + .|.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~-fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWS-FVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---E-EEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCe-EEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 4689999999765 444444444 789 999999 8888888853 67888654 3454421 1 499
Q ss_pred EEeccccccCCHH
Q 041308 128 IFMKWVLTTWTDD 140 (244)
Q Consensus 128 v~~~~~lh~~~~~ 140 (244)
.+|+--+|.-.++
T Consensus 181 tmCNPPFy~s~~e 193 (299)
T PF05971_consen 181 TMCNPPFYSSQEE 193 (299)
T ss_dssp EEE-----SS---
T ss_pred EecCCccccChhh
Confidence 9999888764443
No 293
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.78 E-value=1 Score=39.22 Aligned_cols=94 Identities=15% Similarity=0.026 Sum_probs=65.2
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe---CC-CC----CCC-C-cceEEEeccc
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG---GD-MF----KSI-H-VVDAIFMKWV 133 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~---gd-~~----~~~-p-~~D~v~~~~~ 133 (244)
..+|+=+||| .|.++..+++.....+ ++++|. +.-++.|++......+. .+ .. +.. . .+|+++-..-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~-Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASV-VIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCce-EEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 3499999999 6888888888887777 999999 99999998742222111 11 00 001 1 1488875544
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
....+..+.++++|||+++++-....+
T Consensus 248 --------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 --------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred --------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 124688899999999999998776544
No 294
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=91.61 E-value=0.91 Score=38.65 Aligned_cols=90 Identities=12% Similarity=0.036 Sum_probs=52.0
Q ss_pred cceEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHH
Q 041308 66 VKRLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 66 ~~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
..+|.=||+|. +.++..+.+.....+ ++++|. +...+.+++..-......+..+.+..+|+|++.- +....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~-V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~ 79 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGE-IVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGAS 79 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcE-EEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHH
Confidence 36788898874 334555554433236 888998 6666665543211111222211234469888663 33444
Q ss_pred HHHHHHHHHHcCCCCEEEE
Q 041308 143 KLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii 161 (244)
..+++++...++||..++.
T Consensus 80 ~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 80 GAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHHhhCCCCCEEEe
Confidence 5677888888888876554
No 295
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=91.56 E-value=0.76 Score=40.44 Aligned_cols=109 Identities=9% Similarity=0.113 Sum_probs=60.4
Q ss_pred HHHhccCCCCCCcceEEEEcCCccH----HHHHHHHHc---CCCCeEEEeechH-----HHHhCCCC---------CCee
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGD----CLRIILQKH---CFICEGINFDLPE-----VVAKAPSI---------PEVT 112 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~----~~~~l~~~~---p~~~~~~~~D~~~-----~i~~a~~~---------~~i~ 112 (244)
+.|++.+. -...-+|+|+|.|.|. +.+.|+++. |.++ +|+++.|. .++...++ -..+
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~Lr-IT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLR-ITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEE-EEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 44777766 4566799999999986 455555543 6778 99998732 12211111 1233
Q ss_pred EEe--CCCCCCC-C------cceEEE--eccccccCCHH------HHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 113 HIG--GDMFKSI-H------VVDAIF--MKWVLTTWTDD------ECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 113 ~~~--gd~~~~~-p------~~D~v~--~~~~lh~~~~~------~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
|.. .+-.+.+ + ..++++ +.+.|||+.++ ....+|+.+ +.|+|. .++++|...
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~-vvv~~E~ea 246 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPK-VVVLVEQEA 246 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCC-EEEEEeecC
Confidence 333 2222222 1 123333 55667888632 234566655 478996 555566543
No 296
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.37 E-value=0.97 Score=38.07 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=58.0
Q ss_pred ceEEEEcCC--ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCC-CCCCCcceEEEeccccccCCHHHH
Q 041308 67 KRLVDVGGS--AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDM-FKSIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 67 ~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~-~~~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
.+|+=+|.| .|.+++.+.+.+.... +++.|. ...++.+....-+.-...+. ......+|+|+.+ .|-...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~-i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~Viva-----vPi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVR-IIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVA-----VPIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEE-EEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEe-----ccHHHH
Confidence 466777776 5677888888888877 899998 66666665432222111222 2234456999977 444566
Q ss_pred HHHHHHHHHHcCCCCEEE
Q 041308 143 KLIMENYYKALLAGRKLI 160 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~li 160 (244)
..+++++...|+||..+.
T Consensus 78 ~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 78 EEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHHhcccCCCCCEEE
Confidence 788999988888876654
No 297
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=90.70 E-value=0.42 Score=35.09 Aligned_cols=54 Identities=9% Similarity=-0.026 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcccee
Q 041308 144 LIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFT 223 (244)
Q Consensus 144 ~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~ 223 (244)
.+++++++.++|||.+.-... ...++..|.++||.+.+....+.-.
T Consensus 71 e~~~~l~~~~~~~~~l~Tys~----------------------------------a~~Vr~~L~~aGF~v~~~~g~g~Kr 116 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLATYSS----------------------------------AGAVRRALQQAGFEVEKVPGFGRKR 116 (124)
T ss_dssp HHHHHHHHHEEEEEEEEES------------------------------------BHHHHHHHHHCTEEEEEEE-STTSS
T ss_pred HHHHHHHHHhCCCcEEEEeec----------------------------------hHHHHHHHHHcCCEEEEcCCCCCcc
Confidence 689999999999998875211 2236888999999999988887777
Q ss_pred EEEeecCc
Q 041308 224 LFLSSKSN 231 (244)
Q Consensus 224 ~~~~~~~~ 231 (244)
.++.+.++
T Consensus 117 ~~~~a~~~ 124 (124)
T PF05430_consen 117 EMLRAVKP 124 (124)
T ss_dssp EEEEEEC-
T ss_pred hheEEEcC
Confidence 77776653
No 298
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=90.38 E-value=0.39 Score=39.66 Aligned_cols=96 Identities=15% Similarity=0.066 Sum_probs=53.7
Q ss_pred cceEEEEcCCccHHHHHH---HHHc--CCCCeEEEeec-hHHH------------------------------HhCCCC-
Q 041308 66 VKRLVDVGGSAGDCLRII---LQKH--CFICEGINFDL-PEVV------------------------------AKAPSI- 108 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l---~~~~--p~~~~~~~~D~-~~~i------------------------------~~a~~~- 108 (244)
+..|+++||=.|..+..+ ++.+ ++-+ +.++|- ..+- +..++.
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~-i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRR-IYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS---EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCE-EEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 489999999888766544 3333 2334 778873 2111 111111
Q ss_pred ---CCeeEEeCCCCCCCCcc---eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 109 ---PEVTHIGGDMFKSIHVV---DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 109 ---~~i~~~~gd~~~~~p~~---D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+++.++.|.+.+.+|.. .+.++..=. .+.+ .....|..++..|.|||.+++=|.
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~-DlYe-sT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDC-DLYE-STKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE----SHH-HHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEec-cchH-HHHHHHHHHHhhcCCCeEEEEeCC
Confidence 57999999996666652 332222111 2223 356889999999999999998443
No 299
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.00 E-value=1.8 Score=37.31 Aligned_cols=94 Identities=12% Similarity=-0.006 Sum_probs=55.7
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCH
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTD 139 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~ 139 (244)
.++..+||=+||| .|.++..++++ ....+ ++++|. +.-++.+++.... ....+..+.. ..|+|+=.- ..-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~-vi~~~~~~~k~~~a~~~~~~-~~~~~~~~~~-g~d~viD~~--G~~-- 233 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESK-LVVFGKHQEKLDLFSFADET-YLIDDIPEDL-AVDHAFECV--GGR-- 233 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCc-EEEEeCcHhHHHHHhhcCce-eehhhhhhcc-CCcEEEECC--CCC--
Confidence 3557899999975 56666777765 44557 888887 7666666542221 1111111111 137666221 110
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 140 DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.....+.+..+.|+|||+++++-.
T Consensus 234 -~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 234 -GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred -ccHHHHHHHHHhCcCCcEEEEEee
Confidence 012457888899999999998764
No 300
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.68 E-value=0.34 Score=34.60 Aligned_cols=81 Identities=25% Similarity=0.201 Sum_probs=50.4
Q ss_pred CCccHHHHHHHHHcC--CCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--CC-----cceEEEeccccccCCHHHHH
Q 041308 74 GSAGDCLRIILQKHC--FICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--IH-----VVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 74 ~G~G~~~~~l~~~~p--~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~p-----~~D~v~~~~~lh~~~~~~~~ 143 (244)
||.|.++..+++... +.+ ++++|. +..++.+++ ..+.++.||..++ +. .+|.+++..- .++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~-vvvid~d~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n- 76 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGID-VVVIDRDPERVEELRE-EGVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEEN- 76 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSE-EEEEESSHHHHHHHHH-TTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHH-
T ss_pred EcCCHHHHHHHHHHHhCCCE-EEEEECCcHHHHHHHh-cccccccccchhhhHHhhcCccccCEEEEccC----CHHHH-
Confidence 455667777766543 235 999999 888887775 3488999999876 32 2466654422 33333
Q ss_pred HHHHHHHHHcCCCCEEEE
Q 041308 144 LIMENYYKALLAGRKLIA 161 (244)
Q Consensus 144 ~~l~~~~~~L~pgG~lii 161 (244)
..+....+.+.|..+++.
T Consensus 77 ~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHCCCCeEEE
Confidence 344555567778877775
No 301
>PRK10742 putative methyltransferase; Provisional
Probab=87.86 E-value=0.91 Score=37.43 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=50.1
Q ss_pred HHHhccCCCCCCcc--eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------------CCeeEEe
Q 041308 54 TSVLDGYDGFKGVK--RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------------PEVTHIG 115 (244)
Q Consensus 54 ~~l~~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------------~~i~~~~ 115 (244)
+.+++... ++++. +|||+=+|+|.-+..++.+ +++ ++.++. |.+....++. .|++++.
T Consensus 76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 44666665 66665 9999999999999999987 456 899997 5433222210 3567777
Q ss_pred CCCCCCC---Cc-ceEEEecccc
Q 041308 116 GDMFKSI---HV-VDAIFMKWVL 134 (244)
Q Consensus 116 gd~~~~~---p~-~D~v~~~~~l 134 (244)
+|..+.+ +. .|+|++--.+
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMF 174 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCC
Confidence 7765432 22 3666655444
No 302
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.80 E-value=7.7 Score=28.04 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=52.4
Q ss_pred cceEEEEcCCccHH-HHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CC---cceEEEeccccccCCH
Q 041308 66 VKRLVDVGGSAGDC-LRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IH---VVDAIFMKWVLTTWTD 139 (244)
Q Consensus 66 ~~~vLDvG~G~G~~-~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p---~~D~v~~~~~lh~~~~ 139 (244)
..+|++||-|-=.. +..|.++. +. ++..|+ +. .++ ..++++..|.++| +. .+|+|.+.. ++
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g--~d-v~atDI~~~---~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pp 80 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERG--FD-VLATDINEK---TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PP 80 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcC--Cc-EEEEecccc---cCc--ccceEEEccCCCccHHHhhCccceeecC-----CC
Confidence 46999999886654 44455443 56 888898 54 333 7899999999998 33 358887542 33
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEec
Q 041308 140 DECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
++....+-++.+++ |..++|.-
T Consensus 81 pEl~~~ildva~aV--ga~l~I~p 102 (129)
T COG1255 81 PELQSAILDVAKAV--GAPLYIKP 102 (129)
T ss_pred HHHHHHHHHHHHhh--CCCEEEEe
Confidence 44444444455544 44555543
No 303
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.54 E-value=1.4 Score=36.67 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=30.4
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-----CCCCeEEEeec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-----CFICEGINFDL 98 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~~D~ 98 (244)
+.+...++|+|||.|.++..+.+.. +... ++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~-~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSR-FVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCcc-EEEEec
Confidence 5677899999999999999999987 4567 899997
No 304
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=87.37 E-value=6.3 Score=30.41 Aligned_cols=122 Identities=14% Similarity=0.062 Sum_probs=71.2
Q ss_pred EEcCCccHHHHHHHHHcC-CCC-eEEEeec-hHHHHhCCC---------CCCeeEE-eCCCCCC---C--Cc--ceEEEe
Q 041308 71 DVGGSAGDCLRIILQKHC-FIC-EGINFDL-PEVVAKAPS---------IPEVTHI-GGDMFKS---I--HV--VDAIFM 130 (244)
Q Consensus 71 DvG~G~G~~~~~l~~~~p-~~~-~~~~~D~-~~~i~~a~~---------~~~i~~~-~gd~~~~---~--p~--~D~v~~ 130 (244)
=||=|.=.++..|++.+. ..+ ..|..|- ..+.+.-.. ...+.+. .-|..+. . .. .|.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367777778999999876 333 1566676 555544442 1233332 2344332 2 12 499887
Q ss_pred cccccc-----------CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCH
Q 041308 131 KWVLTT-----------WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTE 199 (244)
Q Consensus 131 ~~~lh~-----------~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~ 199 (244)
++---. ....-...+|+.+.+.|+++|.+.|.-....+ ++.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p----------------------------y~~ 133 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP----------------------------YDS 133 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC----------------------------Ccc
Confidence 755322 01123456789999999999999986542211 111
Q ss_pred HHHHHHHHhCCCCeEEEEEcc
Q 041308 200 QEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~~~~~~ 220 (244)
=.+.++.+++||...+..++.
T Consensus 134 W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 134 WNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred ccHHHHHHhcCCEEEEEecCC
Confidence 123567778999888876654
No 305
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=87.33 E-value=14 Score=29.82 Aligned_cols=107 Identities=8% Similarity=0.071 Sum_probs=56.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCcc----HHHHHHHHHcCCCCeEEEeec-hHH-HHhCCC------CCCeeEEeCCCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAG----DCLRIILQKHCFICEGINFDL-PEV-VAKAPS------IPEVTHIGGDMFK 120 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G----~~~~~l~~~~p~~~~~~~~D~-~~~-i~~a~~------~~~i~~~~gd~~~ 120 (244)
..+++..+..-.+.+.|+++.++.| .++...+.++.+.+ .+++-. +.- .+..+. .+.++|+.|+..+
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR-~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e 107 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGR-HVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPE 107 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCe-EEEEcCChhhHHHHHHHHhhccccccceEEecCCHH
Confidence 3344444431234578899865533 45566666777766 554433 222 222221 1456888887544
Q ss_pred C-C---CcceEEEeccccccCCHHHHH-HHHHHHHHHcCCCCEEEEecccCC
Q 041308 121 S-I---HVVDAIFMKWVLTTWTDDECK-LIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 121 ~-~---p~~D~v~~~~~lh~~~~~~~~-~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
. + ...|.++.-.= .++.. ++|+-+. +.|-|.+++......
T Consensus 108 ~~~~~~~~iDF~vVDc~-----~~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 108 EVMPGLKGIDFVVVDCK-----REDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred HHHhhccCCCEEEEeCC-----chhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 3 3 33487765432 23334 5666432 556688887665433
No 306
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=87.22 E-value=2.8 Score=35.10 Aligned_cols=83 Identities=12% Similarity=-0.051 Sum_probs=49.7
Q ss_pred eEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHH
Q 041308 68 RLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKL 144 (244)
Q Consensus 68 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~ 144 (244)
+|.=||+|. |.++..+.+. +.+ ++++|. +..++.+.+...+.....+. +....+|+|+++ .++....+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~-V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVila-----vp~~~~~~ 72 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHT-VYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILA-----LPIGLLLP 72 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCE-EEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEc-----CCHHHHHH
Confidence 455677763 4455666554 346 899998 77766665432222211111 113346988876 45666778
Q ss_pred HHHHHHHHcCCCCEE
Q 041308 145 IMENYYKALLAGRKL 159 (244)
Q Consensus 145 ~l~~~~~~L~pgG~l 159 (244)
+++++...++|+..+
T Consensus 73 ~~~~l~~~l~~~~ii 87 (279)
T PRK07417 73 PSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHhCCCCcEE
Confidence 889998888876433
No 307
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=86.30 E-value=2.4 Score=38.02 Aligned_cols=101 Identities=13% Similarity=0.025 Sum_probs=58.8
Q ss_pred cceEEEEcCCccH--HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--C---Ce-eEEeC-CCCCC-CCc-----ceEEE
Q 041308 66 VKRLVDVGGSAGD--CLRIILQKHCFICEGINFDL-PEVVAKAPSI--P---EV-THIGG-DMFKS-IHV-----VDAIF 129 (244)
Q Consensus 66 ~~~vLDvG~G~G~--~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~---~i-~~~~g-d~~~~-~p~-----~D~v~ 129 (244)
+..+.|+|.|.|. .+...+-+...-. ++.+|. ..|....... + .- -++.. -++.. +|. .|+|+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~-~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKRE-YSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccce-eEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 4678888877555 4444443332223 788898 6665554432 1 11 11112 22222 332 39999
Q ss_pred eccccccCCHHH-HHH-HHHHHHHHcCCCCEEEEecccCC
Q 041308 130 MKWVLTTWTDDE-CKL-IMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 130 ~~~~lh~~~~~~-~~~-~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
+.+.+|++.... ... .-...++..+||+.+++++....
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999987543 222 23445667889999999987443
No 308
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=85.43 E-value=0.84 Score=39.81 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=31.6
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL 98 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~ 98 (244)
++..+.-+.+...++|+|.|.|.+++.+.-.+ ++. +.++|-
T Consensus 144 lvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~ls-V~aIeg 184 (476)
T KOG2651|consen 144 LVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLS-VKAIEG 184 (476)
T ss_pred HHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-Cce-EEEecc
Confidence 34333226788999999999999999887554 677 888986
No 309
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=85.22 E-value=0.22 Score=41.90 Aligned_cols=98 Identities=17% Similarity=0.040 Sum_probs=65.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEecccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKWVL 134 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~~l 134 (244)
.+..|+|+=+|-|.++..++-.. +.+++.++|. |..++..++. +|+..+.||-..+-|. +|-|.+..+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLl- 271 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLL- 271 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeeccc-
Confidence 45799999999999998444332 3344899999 9888877753 6777778887776443 576664432
Q ss_pred ccCCHHHHHHHHHHHHHHcCC-CC-EEEEecccCCCC
Q 041308 135 TTWTDDECKLIMENYYKALLA-GR-KLIACEPVLPDD 169 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~p-gG-~lii~d~~~~~~ 169 (244)
|.. .+-.--+.++||| || .+-|.+.+.+++
T Consensus 272 ---PSs--e~~W~~A~k~Lk~eggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 272 ---PSS--EQGWPTAIKALKPEGGSILHIHENVKDSD 303 (351)
T ss_pred ---ccc--ccchHHHHHHhhhcCCcEEEEeccccccc
Confidence 221 2334445667887 44 777777776655
No 310
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=85.16 E-value=2.7 Score=35.84 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=62.6
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCC---CCCcceEEEeccccccCC
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFK---SIHVVDAIFMKWVLTTWT 138 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~---~~p~~D~v~~~~~lh~~~ 138 (244)
+.+|.=+|+| .|..+..++.-. +.+ ++++|+ ..-+...... .|+....-+... ....+|+++..-.+-.-.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~-Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GAD-VTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCe-eEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence 4788889998 577777777443 567 999999 7777666653 566665544322 245579888665543333
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 139 DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.+ .-+.++..+.||||+.++=+
T Consensus 246 aP--kLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 246 AP--KLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred Cc--eehhHHHHHhcCCCcEEEEE
Confidence 33 34578889999999988643
No 311
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.77 E-value=1.4 Score=37.79 Aligned_cols=121 Identities=13% Similarity=0.020 Sum_probs=71.6
Q ss_pred EEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC----CCcceEEEeccccccCC----
Q 041308 69 LVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS----IHVVDAIFMKWVLTTWT---- 138 (244)
Q Consensus 69 vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~----~p~~D~v~~~~~lh~~~---- 138 (244)
|+|+=||.|.+...+.+.. .+.+..+|. +...+.-+.+ +. .+..+|+.+- +|..|+++...-+..++
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 5899999999999998765 441355787 6666655543 33 4456777542 44568888766655544
Q ss_pred ----HHHHHHHHHHHHHHc---CCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 139 ----DDECKLIMENYYKAL---LAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 139 ----~~~~~~~l~~~~~~L---~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
++..-.++.++.+.+ +| .++++|.+..-. . ... ......+...|++.|+
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P--~~~v~ENV~~l~-------------~-------~~~--~~~~~~i~~~l~~~GY 133 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKP--KFFLLENVKGLV-------------S-------HDK--GRTFKVIIETLEELGY 133 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCC--CEEEeeccHHHH-------------h-------ccc--chHHHHHHHHHHhCCC
Confidence 122234555554444 55 466677643211 0 001 1234567788889999
Q ss_pred CeEEE
Q 041308 212 PHLRA 216 (244)
Q Consensus 212 ~~~~~ 216 (244)
.+...
T Consensus 134 ~v~~~ 138 (315)
T TIGR00675 134 KVYYK 138 (315)
T ss_pred EEEEE
Confidence 86443
No 312
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.72 E-value=4.6 Score=37.91 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=53.6
Q ss_pred ceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--CC-----cceEEEecccccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--IH-----VVDAIFMKWVLTT 136 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~p-----~~D~v~~~~~lh~ 136 (244)
.+|+=+|+| .+++.+++.. .+.. ++++|. ++.++.+++ ....++.||..++ +. .+|+++..
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~-vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~----- 471 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMR-ITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVIT----- 471 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCC-EEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEE-----
Confidence 466666654 4444444432 2456 999999 888888876 5678899999775 32 24766643
Q ss_pred CCH-HHHHHHHHHHHHHcCCCCEEEEe
Q 041308 137 WTD-DECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 137 ~~~-~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.++ ++...+.. ..|.+.|.-+++..
T Consensus 472 ~~d~~~n~~i~~-~~r~~~p~~~IiaR 497 (601)
T PRK03659 472 CNEPEDTMKIVE-LCQQHFPHLHILAR 497 (601)
T ss_pred eCCHHHHHHHHH-HHHHHCCCCeEEEE
Confidence 223 33334444 45557788888763
No 313
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=84.65 E-value=1.1 Score=36.99 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=26.3
Q ss_pred cceEEEEcCCccHHHHHHHHHcC--------CCCeEEEeec-hHHH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHC--------FICEGINFDL-PEVV 102 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~~D~-~~~i 102 (244)
.-+|+|+|+|+|.++..+++... .++ ++.++. |.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~-y~ivE~Sp~L~ 63 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLR-YHIVEISPYLR 63 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCE-EEEE-TTCCCH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcce-EEEEcCCHHHH
Confidence 47999999999999999998643 246 888887 5443
No 314
>PRK08507 prephenate dehydrogenase; Validated
Probab=84.61 E-value=3.5 Score=34.41 Aligned_cols=84 Identities=15% Similarity=0.127 Sum_probs=49.5
Q ss_pred eEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHH
Q 041308 68 RLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKL 144 (244)
Q Consensus 68 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~ 144 (244)
+|.=||+|. |.++..+.+.....+ ++++|. +...+.+++..-+.. ..+. +....+|+|++. .++.....
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~-v~~~d~~~~~~~~~~~~g~~~~-~~~~-~~~~~aD~Vila-----vp~~~~~~ 73 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISK-VYGYDHNELHLKKALELGLVDE-IVSF-EELKKCDVIFLA-----IPVDAIIE 73 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCE-EEEEcCCHHHHHHHHHCCCCcc-cCCH-HHHhcCCEEEEe-----CcHHHHHH
Confidence 456677763 456666666544446 888898 666655543322211 1121 112236888866 56677778
Q ss_pred HHHHHHHHcCCCCEEE
Q 041308 145 IMENYYKALLAGRKLI 160 (244)
Q Consensus 145 ~l~~~~~~L~pgG~li 160 (244)
+++++.. ++||..++
T Consensus 74 ~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 74 ILPKLLD-IKENTTII 88 (275)
T ss_pred HHHHHhc-cCCCCEEE
Confidence 8888888 88876443
No 315
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=84.57 E-value=3.2 Score=31.88 Aligned_cols=43 Identities=19% Similarity=-0.011 Sum_probs=30.2
Q ss_pred eEEEeccccccCC---------HHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 126 DAIFMKWVLTTWT---------DDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 126 D~v~~~~~lh~~~---------~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
|.+.+.+++.|+- +.--.+.++++.++|||||.+++.=++-.+
T Consensus 65 D~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 65 DFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred hhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 7766666665542 111246789999999999999997766543
No 316
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=83.41 E-value=3.1 Score=30.53 Aligned_cols=84 Identities=23% Similarity=0.291 Sum_probs=43.5
Q ss_pred cceEEEEcCCccH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CC---cceEEEeccccccCCH
Q 041308 66 VKRLVDVGGSAGD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IH---VVDAIFMKWVLTTWTD 139 (244)
Q Consensus 66 ~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p---~~D~v~~~~~lh~~~~ 139 (244)
..++++||-|.=. .+..|.+.. .. ++++|. +. .+. ..+.++..|.++| +. .+|+|.+... +
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G--~d-V~~tDi~~~---~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERG--FD-VIATDINPR---KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIRP-----P 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS---E-EEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------
T ss_pred CCcEEEECcCCCHHHHHHHHHcC--Cc-EEEEECccc---ccc--cCcceeeecccCCCHHHhcCCcEEEEeCC-----C
Confidence 4699999988655 455555554 66 899998 65 222 7899999999998 32 3588886543 2
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 140 DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.+...-+.++++.. |.-++|...
T Consensus 81 ~El~~~il~lA~~v--~adlii~pL 103 (127)
T PF03686_consen 81 PELQPPILELAKKV--GADLIIRPL 103 (127)
T ss_dssp TTSHHHHHHHHHHH--T-EEEEE-B
T ss_pred hHHhHHHHHHHHHh--CCCEEEECC
Confidence 33344455555543 556666544
No 317
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.35 E-value=8.1 Score=36.47 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=55.7
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--CC-----cceEEEecccccc
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--IH-----VVDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~p-----~~D~v~~~~~lh~ 136 (244)
..+|+=+||| .|......+++ .+.. ++++|. ++.++.+++ ....++.||..++ +. .+|++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~-vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~----- 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS-SGVK-MTVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINA----- 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh-CCCC-EEEEECCHHHHHHHHh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEE-----
Confidence 3688888887 45544444433 2456 899998 888888876 5678899999775 32 24766644
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.++++.-..+-...|.+.|.-+++.
T Consensus 472 ~~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 472 IDDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred eCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 2333333334445555678777665
No 318
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=82.97 E-value=1.3 Score=39.75 Aligned_cols=91 Identities=14% Similarity=-0.012 Sum_probs=53.3
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEE------Eeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCC
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGI------NFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWT 138 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~------~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~ 138 (244)
..+|+=||||.=.-+.++--+-.+++ ++ ++|. +..-+.|.+ +. |..++..+-++.+|+|++. .|
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvn-Vvvglr~~~id~~~~s~~kA~~-dG--F~v~~~~Ea~~~ADvVviL-----lP 106 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLD-ISYALRKEAIAEKRASWRKATE-NG--FKVGTYEELIPQADLVINL-----TP 106 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccce-eEEeccccccccccchHHHHHh-cC--CccCCHHHHHHhCCEEEEc-----CC
Confidence 48999999985444444433333444 33 2222 222222222 22 2223332225667998865 45
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 139 DDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
|.....+.+++...||||..|.+.+-+
T Consensus 107 Dt~q~~v~~~i~p~LK~Ga~L~fsHGF 133 (487)
T PRK05225 107 DKQHSDVVRAVQPLMKQGAALGYSHGF 133 (487)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEecCCc
Confidence 555567779999999999999987654
No 319
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=82.84 E-value=1.1 Score=40.31 Aligned_cols=130 Identities=11% Similarity=0.029 Sum_probs=83.2
Q ss_pred cCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---
Q 041308 33 KKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--- 108 (244)
Q Consensus 33 ~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--- 108 (244)
+.++..-.|.+.|.+--..+....-.. ......+|-+|-|.|.+...+-...|... ++++.+ |.|++.++.+
T Consensus 266 r~~~l~s~~h~~m~~g~aL~~n~~~~~---~~~~~~~lvvg~ggG~l~sfl~~~~p~~~-i~~ve~dP~~l~va~q~f~f 341 (482)
T KOG2352|consen 266 RKPELASQYHQMMIGGLALIMNRPPQK---LDTGGKQLVVGLGGGGLPSFLHMSLPKFQ-ITAVEIDPEMLEVATQYFGF 341 (482)
T ss_pred cCcccCcchhhhhhccceeccccCchh---ccccCcEEEEecCCCccccceeeecCccc-eeEEEEChhHhhccHhhhch
Confidence 344555567777766555433322222 22346788888888999999998899888 999999 9999999974
Q ss_pred ---CCeeEEeCCCCCC----C---Cc---ceEEEec----cccccCC---HH-HHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 109 ---PEVTHIGGDMFKS----I---HV---VDAIFMK----WVLTTWT---DD-ECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 109 ---~~i~~~~gd~~~~----~---p~---~D~v~~~----~~lh~~~---~~-~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
.|.+++-.|-.+. . ++ .|+++.- . -|... .. -+..+|..+..+|.|-|.++|.=.+.+
T Consensus 342 ~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 342 MQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred hhhhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 4455544444322 1 11 3766632 2 33332 21 355789999999999999976544433
No 320
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=82.59 E-value=9.2 Score=32.36 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=52.6
Q ss_pred CcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCc-ceEEEeccccccCCHHH
Q 041308 65 GVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 65 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~~~ 141 (244)
...++|=+|+| .|.++..+++... .+.++++|. +..++.+.+..-+ |..+.... .|+|+=.- ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~~~i-----~~~~~~~~g~Dvvid~~-----G~-- 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGYEVL-----DPEKDPRRDYRAIYDAS-----GD-- 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhcccc-----ChhhccCCCCCEEEECC-----CC--
Confidence 34678888865 7888888888764 442566777 6666666542111 11111122 37776331 11
Q ss_pred HHHHHHHHHHHcCCCCEEEEecc
Q 041308 142 CKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
...+..+.+.|+|||+++++-.
T Consensus 211 -~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 -PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -HHHHHHHHHhhhcCcEEEEEee
Confidence 2456788889999999998754
No 321
>PTZ00357 methyltransferase; Provisional
Probab=82.20 E-value=4.4 Score=38.44 Aligned_cols=130 Identities=13% Similarity=0.080 Sum_probs=78.6
Q ss_pred cccccccCchHHHHHHHHHHcccccchH------------HH------hccCCC---CCCcceEEEEcCCccHHHHHHHH
Q 041308 27 AYSYYGKKPKMNGLMRKAMSRVFVPFMT------------SV------LDGYDG---FKGVKRLVDVGGSAGDCLRIILQ 85 (244)
Q Consensus 27 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~------------~l------~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~ 85 (244)
.||..++|+-..+.|.+++..+-..+.+ .+ ++..+. -.....|+=+|+|-|-+....++
T Consensus 641 TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLr 720 (1072)
T PTZ00357 641 VYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLH 720 (1072)
T ss_pred hHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHH
Confidence 4888999999999999998765432211 00 011110 01124689999999999887776
Q ss_pred HcC----CCCeEEEeec-hHHH---HhCC-C-C----------CCeeEEeCCCCCC-CC-------------cceEEEec
Q 041308 86 KHC----FICEGINFDL-PEVV---AKAP-S-I----------PEVTHIGGDMFKS-IH-------------VVDAIFMK 131 (244)
Q Consensus 86 ~~p----~~~~~~~~D~-~~~i---~~a~-~-~----------~~i~~~~gd~~~~-~p-------------~~D~v~~~ 131 (244)
... .++ +.+++- |+.+ ...+ . . .+|+++..|+.+- .+ ..|+||+.
T Consensus 721 Aak~~gvkVr-IyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 721 AVSALGVRLR-IFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSE 799 (1072)
T ss_pred HHHHcCCcEE-EEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHh
Confidence 543 345 777776 4421 1111 1 0 3589999999763 22 25888865
Q ss_pred cccccCCHHH-HHHHHHHHHHHcCC----CCE
Q 041308 132 WVLTTWTDDE-CKLIMENYYKALLA----GRK 158 (244)
Q Consensus 132 ~~lh~~~~~~-~~~~l~~~~~~L~p----gG~ 158 (244)
+|.-|-|.+ ....|.-+.+.||+ +|.
T Consensus 800 -LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 800 -LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred -hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 344444433 34567777777776 665
No 322
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=81.79 E-value=8.3 Score=33.64 Aligned_cols=27 Identities=19% Similarity=0.130 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 143 KLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
..+|++..++||+||+++-..+.+.+-
T Consensus 276 ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 276 LRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 578999999999999999887766544
No 323
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=81.70 E-value=3.9 Score=35.58 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=40.1
Q ss_pred CchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc----C----CCCeEEEeec-hHHHH
Q 041308 34 KPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH----C----FICEGINFDL-PEVVA 103 (244)
Q Consensus 34 ~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p----~~~~~~~~D~-~~~i~ 103 (244)
.|++...|-+....+--. +.+.+. .+.+.+++++|+|+|.++..+++.. | .++ +..++. ++..+
T Consensus 51 Apels~lFGella~~~~~----~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~-~~iiE~s~~L~~ 123 (370)
T COG1565 51 APELSQLFGELLAEQFLQ----LWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALS-YYIIEPSPELRA 123 (370)
T ss_pred chhHHHHHHHHHHHHHHH----HHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcce-EEEEecCHHHHH
Confidence 355666666655432221 222232 3445789999999999999988764 4 456 788887 55443
No 324
>PRK06545 prephenate dehydrogenase; Validated
Probab=80.93 E-value=7.2 Score=34.06 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=44.5
Q ss_pred eEEEEcCC--ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHH
Q 041308 68 RLVDVGGS--AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKL 144 (244)
Q Consensus 68 ~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~ 144 (244)
+|.=||+| .|.++..+.+.++... ++..|. ......+....-+.-...|..+....+|+|+++ .+++....
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~-i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVila-----vP~~~~~~ 75 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVF-IIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLA-----VPVDATAA 75 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeE-EEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEe-----CCHHHHHH
Confidence 45667776 3556666666666555 565554 322222221111111111111113346988876 45566778
Q ss_pred HHHHHHH-HcCCCCE
Q 041308 145 IMENYYK-ALLAGRK 158 (244)
Q Consensus 145 ~l~~~~~-~L~pgG~ 158 (244)
+++++.. .++|+-.
T Consensus 76 vl~~l~~~~l~~~~i 90 (359)
T PRK06545 76 LLAELADLELKPGVI 90 (359)
T ss_pred HHHHHhhcCCCCCcE
Confidence 8888887 4788743
No 325
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=80.54 E-value=2.3 Score=35.95 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=46.9
Q ss_pred CCeeEEeCCCCCCCCc-------ceEEEec-cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhh
Q 041308 109 PEVTHIGGDMFKSIHV-------VDAIFMK-WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALL 180 (244)
Q Consensus 109 ~~i~~~~gd~~~~~p~-------~D~v~~~-~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~ 180 (244)
-+|+|+..|..+.++. .|+|++. +..|.+.++ +.++++|++.|++ |....
T Consensus 200 vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~Lvv-EtaKf------------- 257 (289)
T PF14740_consen 200 VKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLVV-ETAKF------------- 257 (289)
T ss_pred cEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEEE-Ecchh-------------
Confidence 4578888877666543 3776654 566666664 5567899987775 43211
Q ss_pred cccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 181 EGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 181 ~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
..++..- ...--.+.+.+++++|||+...
T Consensus 258 mvdLrKE------q~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 258 MVDLRKE------QLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred heeCCHH------HHHHHHHHHHHHHHHCCCcccc
Confidence 1111000 0001156789999999998654
No 326
>PRK13699 putative methylase; Provisional
Probab=80.54 E-value=2.6 Score=34.33 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCCCEEEE
Q 041308 142 CKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii 161 (244)
....+++++|+|||||.+++
T Consensus 51 ~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEE
Confidence 45789999999999998886
No 327
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=79.65 E-value=1.2 Score=35.46 Aligned_cols=50 Identities=10% Similarity=0.043 Sum_probs=35.7
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP 106 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~ 106 (244)
+++.+++.+. .++..|||.=||+|..+.+..+..- + ++++|+ +...+.|+
T Consensus 180 l~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l~R--~-~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 180 LIERLIKAST--NPGDIVLDPFAGSGTTAVAAEELGR--R-YIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHTT---E-EEEEESSHHHHHHHH
T ss_pred HHHHHHHhhh--ccceeeehhhhccChHHHHHHHcCC--e-EEEEeCCHHHHHHhc
Confidence 3556666654 4568999999999999998887653 3 999999 87776653
No 328
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=78.90 E-value=2.6 Score=35.62 Aligned_cols=65 Identities=14% Similarity=0.070 Sum_probs=52.2
Q ss_pred hHHHHhCCCC-CCeeEEeCCCCCCCC---cc--eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 99 PEVVAKAPSI-PEVTHIGGDMFKSIH---VV--DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 99 ~~~i~~a~~~-~~i~~~~gd~~~~~p---~~--D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+.+-+.++.+ .|+.++.+|+.+.+. .+ |-+++..+=..+++.+...++.++.+-+.||.++++-.
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRt 366 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRT 366 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEec
Confidence 4455555544 789999999977633 22 88998888888899999999999999999999999854
No 329
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=78.48 E-value=6.1 Score=30.87 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=33.7
Q ss_pred eEEEeccccccCCH----------HHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 126 DAIFMKWVLTTWTD----------DECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 126 D~v~~~~~lh~~~~----------~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
|+|++++.||.++. ++..++++++.++|+|+..+|......
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999998875 456778889999999998888776544
No 330
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=78.04 E-value=7.1 Score=32.61 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=61.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCc--c-eEEEeccccccCCHH
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHV--V-DAIFMKWVLTTWTDD 140 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~--~-D~v~~~~~lh~~~~~ 140 (244)
.++...+|+|..+|.++-.+.+++ .. ++.+|...|.+..-...+|+....|-|+..|. . |-.+|-.+ .
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~--m~-V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV----E-- 280 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRN--MR-VYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV----E-- 280 (358)
T ss_pred cCCceeeecccCCCccchhhhhcc--eE-EEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh----c--
Confidence 467899999999999999999874 67 99999966766666668999999998887663 2 65554433 2
Q ss_pred HHHHHHHHHHHHcCCC
Q 041308 141 ECKLIMENYYKALLAG 156 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pg 156 (244)
+..++-..+...|..|
T Consensus 281 kP~rv~~li~~Wl~nG 296 (358)
T COG2933 281 KPARVAALIAKWLVNG 296 (358)
T ss_pred CcHHHHHHHHHHHHcc
Confidence 2234556666677654
No 331
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=77.84 E-value=17 Score=31.17 Aligned_cols=92 Identities=12% Similarity=0.018 Sum_probs=54.8
Q ss_pred CCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe---CCCCCC---CCcceEEEeccccc
Q 041308 64 KGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG---GDMFKS---IHVVDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~---gd~~~~---~p~~D~v~~~~~lh 135 (244)
.+..+||=.|+| .|..+..+++..-.-+ ++++|. +.-++.+++..--.++. .|+.+. ....|+|+-.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~---- 242 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAE-IVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEV---- 242 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcE-EEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEEC----
Confidence 356788888875 6667777777653225 778887 77777776642111111 111110 1113766533
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
...+ ..++.+.+.|+|||+++++-.
T Consensus 243 -~G~~---~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 243 -SGHP---SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -CCCH---HHHHHHHHHhhcCCEEEEEcc
Confidence 2222 356778889999999999864
No 332
>PRK11524 putative methyltransferase; Provisional
Probab=77.62 E-value=2.8 Score=35.32 Aligned_cols=51 Identities=6% Similarity=-0.066 Sum_probs=39.3
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI 108 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~ 108 (244)
++.++..+. .++..|||.=||+|..+.+..+..- + .+++|+ ++-++.|+++
T Consensus 198 ~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~lgR--~-~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 198 LKRIILASS--NPGDIVLDPFAGSFTTGAVAKASGR--K-FIGIEINSEYIKMGLRR 249 (284)
T ss_pred HHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHcCC--C-EEEEeCCHHHHHHHHHH
Confidence 455555543 4678999999999999998887643 4 999999 8888887753
No 333
>PLN02494 adenosylhomocysteinase
Probab=77.45 E-value=5.7 Score=36.03 Aligned_cols=103 Identities=11% Similarity=0.016 Sum_probs=58.2
Q ss_pred ccchHHHhccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceE
Q 041308 50 VPFMTSVLDGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDA 127 (244)
Q Consensus 50 ~~~~~~l~~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~ 127 (244)
+...+.+.+.-+..-.+.+++=+|+| .|......++.+ +.+ ++++|. +.....+.. ....+. ++.+-++.+|+
T Consensus 238 qS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~-VIV~e~dp~r~~eA~~-~G~~vv--~leEal~~ADV 312 (477)
T PLN02494 238 HSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GAR-VIVTEIDPICALQALM-EGYQVL--TLEDVVSEADI 312 (477)
T ss_pred ccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCchhhHHHHh-cCCeec--cHHHHHhhCCE
Confidence 34456666665522346899999987 454444444433 567 888887 533222222 122222 22111445698
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+...--. ..+.++..+.||||+.|+.+-.
T Consensus 313 VI~tTGt~-------~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 313 FVTTTGNK-------DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EEECCCCc-------cchHHHHHhcCCCCCEEEEcCC
Confidence 88632211 1234778889999999998754
No 334
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=76.68 E-value=14 Score=32.68 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=43.6
Q ss_pred ceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCC------CCcceEEEec
Q 041308 67 KRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKS------IHVVDAIFMK 131 (244)
Q Consensus 67 ~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~------~p~~D~v~~~ 131 (244)
.+||=|||| .|..+..-+.+..+.+ +++.|. +.-.+.+... .+++...-|..+. +.+.|+|+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~-V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGE-VTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 478899985 5666555555555567 999998 6666666543 5889988888764 2234777744
No 335
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=76.35 E-value=4.4 Score=29.19 Aligned_cols=82 Identities=13% Similarity=-0.033 Sum_probs=55.0
Q ss_pred CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC---C----CCc--ceEEEeccccccCCHHHHHH
Q 041308 75 SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK---S----IHV--VDAIFMKWVLTTWTDDECKL 144 (244)
Q Consensus 75 G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~---~----~p~--~D~v~~~~~lh~~~~~~~~~ 144 (244)
|.|..+..+++... .+ ++++|. +.-++.+++..--.+...+-.+ . .+. .|+|+-+- .. ..
T Consensus 1 ~vG~~a~q~ak~~G-~~-vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-----g~---~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AK-VIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-----GS---GD 70 (130)
T ss_dssp HHHHHHHHHHHHTT-SE-EEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESS-----SS---HH
T ss_pred ChHHHHHHHHHHcC-CE-EEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEec-----Cc---HH
Confidence 46888999998876 77 999998 7777887765322222222211 1 222 37776442 21 25
Q ss_pred HHHHHHHHcCCCCEEEEecccC
Q 041308 145 IMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 145 ~l~~~~~~L~pgG~lii~d~~~ 166 (244)
.++...++|+|+|+++++-...
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 6889999999999999987755
No 336
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=76.26 E-value=2.1 Score=35.82 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=28.3
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVA 103 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~ 103 (244)
...+|||+|||+|...+....... .. +...|. ..+++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~-~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VS-VHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ce-eeeEecchhhee
Confidence 358999999999999888887653 55 777787 66653
No 337
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=76.11 E-value=3.5 Score=38.39 Aligned_cols=107 Identities=13% Similarity=0.132 Sum_probs=63.3
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCC---CC--------c
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS---IH--------V 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~---~p--------~ 124 (244)
|-+.|.-+.+...+||+||.+|.+.+-.++..|-..-++++|+..+ +..++|...+.|+..+ ++ .
T Consensus 35 ln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi----kp~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 35 LNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI----KPIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred HHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec----ccCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 4455552456678999999999999999998885443799998333 3335555555565433 11 1
Q ss_pred ceEEEeccccccC----CHH------HHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 125 VDAIFMKWVLTTW----TDD------ECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 125 ~D~v~~~~~lh~~----~~~------~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
+|+|+ ....|.+ ..+ -....|+-+...|+-||.++ ...+.+.
T Consensus 111 advVL-hDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv-tkvfrs~ 162 (780)
T KOG1098|consen 111 ADVVL-HDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV-TKVFRSE 162 (780)
T ss_pred CcEEe-ecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc-cccccCC
Confidence 36554 2222222 222 12234666677788899833 3443333
No 338
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=76.06 E-value=33 Score=28.93 Aligned_cols=91 Identities=18% Similarity=0.087 Sum_probs=55.6
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-------CCc--ceEEEec
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-------IHV--VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-------~p~--~D~v~~~ 131 (244)
+....+||..|+| .|..+..+++.. +.+ +++++. +...+.+++.. ++.+..+-... .+. .|+++-+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~-V~~~~~s~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~D~vid~ 239 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAA-VIAVDIKEEKLELAKELG-ADEVLNSLDDSPKDKKAAGLGGGFDVIFDF 239 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCE-EEEEcCCHHHHHHHHHhC-CCEEEcCCCcCHHHHHHHhcCCCceEEEEC
Confidence 5667899998876 578888888775 466 777776 66666654421 22221111011 111 3776633
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.. .. ..++++.+.|+++|+++....
T Consensus 240 ~g-----~~---~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 240 VG-----TQ---PTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CC-----CH---HHHHHHHHHhhcCCEEEEECC
Confidence 11 11 357888999999999998754
No 339
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=75.92 E-value=17 Score=25.39 Aligned_cols=77 Identities=10% Similarity=0.018 Sum_probs=45.8
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhh-ccCc------eecCHHHHHH
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIY-RAKG------KHKTEQEFKQ 204 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~------~~~t~~e~~~ 204 (244)
.+|-|++.++..++|+++.+. ..|.+++.=. |. .+. +.+....+. .+++ ....++++.+
T Consensus 3 DvLIHYp~~d~~~~l~~La~~--t~~~~ifTfA--P~---T~~-------L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~ 68 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASR--TRGSLIFTFA--PR---TPL-------LALMHAIGKLFPRPDRSPRIYPHREEDLRR 68 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHh--ccCcEEEEEC--CC---CHH-------HHHHHHHhccCCCCCCCCcEEEeCHHHHHH
Confidence 355578888899999999763 3456665321 11 121 111111101 1222 2236789999
Q ss_pred HHHhCCCCeEEEEEccce
Q 041308 205 LGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~ 222 (244)
.++++||++.+.+-+..+
T Consensus 69 ~l~~~g~~~~r~~ris~g 86 (97)
T PF07109_consen 69 ALAAAGWRIGRTERISSG 86 (97)
T ss_pred HHHhCCCeeeecccccCc
Confidence 999999999888766543
No 340
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=75.67 E-value=13 Score=31.02 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=50.4
Q ss_pred ceEEEEcCC--ccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHH
Q 041308 67 KRLVDVGGS--AGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 67 ~~vLDvG~G--~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~ 141 (244)
.+|.=|||| .+.++..+.+.. +..+ +++.|. +.-.+.+.+...+.. ..|..+....+|+|++. +++..
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~-I~v~~r~~~~~~~l~~~~g~~~-~~~~~e~~~~aDiIiLa-----vkP~~ 75 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQ-IICSDLNVSNLKNASDKYGITI-TTNNNEVANSADILILS-----IKPDL 75 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCce-EEEECCCHHHHHHHHHhcCcEE-eCCcHHHHhhCCEEEEE-----eChHH
Confidence 357778887 344555565543 2235 888887 555544432112332 22221123346988866 55677
Q ss_pred HHHHHHHHHHHcCCCCEEEE
Q 041308 142 CKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii 161 (244)
...+++++...++++..++-
T Consensus 76 ~~~vl~~l~~~~~~~~lvIS 95 (272)
T PRK12491 76 YSSVINQIKDQIKNDVIVVT 95 (272)
T ss_pred HHHHHHHHHHhhcCCcEEEE
Confidence 78888998888877654443
No 341
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=75.30 E-value=18 Score=30.81 Aligned_cols=122 Identities=12% Similarity=0.094 Sum_probs=62.2
Q ss_pred CcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hH-HHHhCCCCCCeeEEeC-CCCCCCCcceEEEeccccccCCHH
Q 041308 65 GVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PE-VVAKAPSIPEVTHIGG-DMFKSIHVVDAIFMKWVLTTWTDD 140 (244)
Q Consensus 65 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~-~i~~a~~~~~i~~~~g-d~~~~~p~~D~v~~~~~lh~~~~~ 140 (244)
...+|+-+|+| .|..+...+.. .+.+.++++|. +. ..+.+++... ..... |..+.++.+|+|+..-.--+.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~-~g~~~V~v~~r~~~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVi~at~~~~~--- 251 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAA-KGVAEITIANRTYERAEELAKELGG-NAVPLDELLELLNEADVVISATGAPHY--- 251 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHcCC-eEEeHHHHHHHHhcCCEEEECCCCCch---
Confidence 46899999986 34443333333 23332788887 44 3344444322 22221 121224456999877554332
Q ss_pred HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh
Q 041308 141 ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS 208 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~ 208 (244)
..+++.+.+.. +++..+++|...|.+.+ +... ..++-..++.++|+++.++
T Consensus 252 --~~~~~~~~~~~-~~~~~~viDlavPrdi~-~~v~-------------~l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 252 --AKIVERAMKKR-SGKPRLIVDLAVPRDIE-PEVG-------------ELEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred --HHHHHHHHhhC-CCCCeEEEEeCCCCCCc-hhhc-------------cCCCcEEEEHHHhHHHHHH
Confidence 23344443333 44556667877665522 1110 1245556677777776654
No 342
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=74.49 E-value=37 Score=26.11 Aligned_cols=93 Identities=11% Similarity=0.037 Sum_probs=60.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCC--CCc-----ceEEEeccccccC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS--IHV-----VDAIFMKWVLTTW 137 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~--~p~-----~D~v~~~~~lh~~ 137 (244)
+..+|+-|||-+-.....- ...+..+ +..+|...--+.-- +. +|+--|+-++ +|. .|+|++---+ +
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~-~~Lle~D~RF~~~~--~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF--l 97 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQ-SFLLEYDRRFEQFG--GD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF--L 97 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCcc-EEEEeecchHHhcC--Cc-ceEECCCCChhhhhhhcCCCceEEEECCCC--C
Confidence 4589999998876554433 2446677 89999833333211 23 5666677665 552 3999988776 6
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 138 TDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+.+-..+..+.++-.+++++++++...
T Consensus 98 ~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 98 SEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CHHHHHHHHHHHHHHhCccceEEEecH
Confidence 666555666667777788889887543
No 343
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=74.35 E-value=18 Score=31.41 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=56.9
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCC-CCCeeEEeCCCCCCCCc-ceEEEeccc
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPS-IPEVTHIGGDMFKSIHV-VDAIFMKWV 133 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~-~~~i~~~~gd~~~~~p~-~D~v~~~~~ 133 (244)
+.+..+ .-...+||=+|.-...+...+.. ...+ +...+-.......+. ..++.|- .++..+.+. .|.|++..-
T Consensus 11 ~~r~~~-~~~~~~~l~~~~~~d~~~~~l~~--~~~~-~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~d~~~~~~p 85 (342)
T PRK09489 11 LLRHSD-DFEQRRVLFAGDLQDDLPAQLDA--ASVR-VHTQQFHHWQVLSRQMGDNARFS-LVATAEDVADCDTLIYYWP 85 (342)
T ss_pred HHhhHH-HhCCCcEEEEcCcchhhHHhhhc--cceE-EehhhhHHHHHHHhhcCCceEec-cccCCccCCCCCEEEEECC
Confidence 444444 22346899999888888777751 2223 332222222222211 1334442 223223333 488876643
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
=. -.++.-.|.++.+.|+|||.++++-.
T Consensus 86 k~---k~~~~~~l~~~~~~l~~g~~i~~~G~ 113 (342)
T PRK09489 86 KN---KQEAQFQLMNLLSLLPVGTDIFVVGE 113 (342)
T ss_pred CC---HHHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 22 34567789999999999999999754
No 344
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=74.31 E-value=9.3 Score=35.11 Aligned_cols=93 Identities=20% Similarity=0.197 Sum_probs=60.0
Q ss_pred CcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC--------------C-------
Q 041308 65 GVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK--------------S------- 121 (244)
Q Consensus 65 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~--------------~------- 121 (244)
+..+++=+|+| .|..+..+++.. +.+ ++++|. +..++.++.. ..+++.-|..+ +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~-V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAI-VRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHH
Confidence 45899999998 567777777664 456 888998 8777777753 22332323211 0
Q ss_pred -----CCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 122 -----IHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 122 -----~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
...+|+|+..-.+..-+.+ .-+.++..+.+|||+.++-+
T Consensus 240 ~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEEe
Confidence 1235998766655443222 24678889999999997654
No 345
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=73.54 E-value=10 Score=35.17 Aligned_cols=87 Identities=11% Similarity=0.067 Sum_probs=52.3
Q ss_pred ceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--CC-----cceEEEecccccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--IH-----VVDAIFMKWVLTT 136 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~p-----~~D~v~~~~~lh~ 136 (244)
.+++=+||| ..++.+++.. .+.. ++++|. ++.++.+++ ..+..+.||..++ +. .+|.++..- +
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~-vvvId~d~~~~~~~~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~--~- 490 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIP-LVVIETSRTRVDELRE-RGIRAVLGNAANEEIMQLAHLDCARWLLLTI--P- 490 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHH-CCCeEEEcCCCCHHHHHhcCccccCEEEEEc--C-
Confidence 566666665 4444555443 2346 899998 888888875 5788999999876 32 246554321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
++++...+... .+.+.|.-+++..
T Consensus 491 -~~~~~~~iv~~-~~~~~~~~~iiar 514 (558)
T PRK10669 491 -NGYEAGEIVAS-AREKRPDIEIIAR 514 (558)
T ss_pred -ChHHHHHHHHH-HHHHCCCCeEEEE
Confidence 12333334443 4556787777653
No 346
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=73.47 E-value=13 Score=32.02 Aligned_cols=120 Identities=18% Similarity=0.084 Sum_probs=77.0
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC----CC--cceEEEeccccccC
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS----IH--VVDAIFMKWVLTTW 137 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~----~p--~~D~v~~~~~lh~~ 137 (244)
.-+++|+=||-|.+...+.....++ +..+|+ +..++.-+.+ +...++..|..+- ++ ..|+++...-+..|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~--~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~F 80 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEI--VFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDF 80 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeE--EEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcch
Confidence 3589999999999999999877432 355677 7666665554 3255566666542 22 34888877777666
Q ss_pred CHHH--------HH---HHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHH
Q 041308 138 TDDE--------CK---LIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLG 206 (244)
Q Consensus 138 ~~~~--------~~---~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll 206 (244)
+-.. +- .-+.++.+.++| .++++|.+..-. .. ...+.++|.+-|
T Consensus 81 S~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~---------------------~~--~~~~~~~i~~~L 135 (328)
T COG0270 81 SIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLL---------------------SS--KGQTFDEIKKEL 135 (328)
T ss_pred hhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHH---------------------hc--CchHHHHHHHHH
Confidence 5321 11 124456666777 777777643211 00 234578899999
Q ss_pred HhCCCC
Q 041308 207 FSTGFP 212 (244)
Q Consensus 207 ~~aGf~ 212 (244)
++.|+.
T Consensus 136 ~~~GY~ 141 (328)
T COG0270 136 EELGYG 141 (328)
T ss_pred HHcCCc
Confidence 999997
No 347
>PHA01634 hypothetical protein
Probab=73.31 E-value=4.1 Score=30.06 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=31.4
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~ 107 (244)
..+|+|||++-|..++.++-+.. +.++.++. +...+..++
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHH
Confidence 38999999999999999997653 33788887 766666654
No 348
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=73.18 E-value=32 Score=27.67 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=54.0
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-C--------Cc-ceEEEe
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-I--------HV-VDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~--------p~-~D~v~~ 130 (244)
..+..+||..|+|+ |..+..+++... .+ +++++. +...+.+++...-.+. |..+. . .. .|+++-
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g-~~-v~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG-AR-VIVTDRSDEKLELAKELGADHVI--DYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-Ce-EEEEcCCHHHHHHHHHhCCceec--cCCcCCHHHHHHHhcCCCCCEEEE
Confidence 35678999999985 667777776653 56 788877 5555554432111111 11111 0 11 377763
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
. .... ..+..+.+.|+++|+++.....
T Consensus 208 ~-----~~~~---~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 208 A-----VGGP---ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred C-----CCCH---HHHHHHHHhcccCCEEEEEccC
Confidence 3 2221 3467778899999999987653
No 349
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=71.08 E-value=28 Score=28.27 Aligned_cols=65 Identities=17% Similarity=0.317 Sum_probs=41.3
Q ss_pred CcceEEEEcCCccHHH--HHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCcceEEEec
Q 041308 65 GVKRLVDVGGSAGDCL--RIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHVVDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~--~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~~D~v~~~ 131 (244)
...+||=||||.=..- ..|++...+++ ++.-++ +++.+.++ ..+++++..++... +..+++|+..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~Vt-VVap~i~~el~~l~~-~~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVY-ILSKKFSKEFLDLKK-YGNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEcCCCCHHHHHHHh-CCCEEEEeCCCChHHhCCCcEEEEC
Confidence 3579999999977654 34555444544 554566 66655443 47899988777543 5445777655
No 350
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=70.99 E-value=9.1 Score=30.05 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=49.5
Q ss_pred eEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------------------CCeeEEeCCCCCCCCcc
Q 041308 68 RLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSI-------------------PEVTHIGGDMFKSIHVV 125 (244)
Q Consensus 68 ~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------------------~~i~~~~gd~~~~~p~~ 125 (244)
+|-=+|.|. |. ++..+++. +.+ ++++|. +..++..++. .|..+. .|+.+.+..+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~--G~~-V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~a 77 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK--GHQ-VIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKDA 77 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT--TSE-EEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH-
T ss_pred EEEEECCCcchHHHHHHHHhC--CCE-EEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhcc
Confidence 455567663 33 23334433 356 999999 8777666541 222321 1221113335
Q ss_pred eEEEecccccc-----CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 126 DAIFMKWVLTT-----WTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 126 D~v~~~~~lh~-----~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
|+++++----. .+-....++++.+.+.|++ |.+++.+.+.+..
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~-~~lvV~~STvppG 125 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP-GDLVVIESTVPPG 125 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS-CEEEEESSSSSTT
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh-cceEEEccEEEEe
Confidence 88776532211 1123366789999999998 6777777666554
No 351
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=70.23 E-value=1.7 Score=29.75 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=43.3
Q ss_pred CccHHHHHHHHH----c-CCCCeEEEe-ec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHH
Q 041308 75 SAGDCLRIILQK----H-CFICEGINF-DL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIME 147 (244)
Q Consensus 75 G~G~~~~~l~~~----~-p~~~~~~~~-D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~ 147 (244)
|+|..+..+++. . +..+ +..+ +. ++-.+...+.-.+.+...+..+-...+|+|++. +++.....+++
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvila-----v~p~~~~~v~~ 79 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHE-VIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILA-----VKPQQLPEVLS 79 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGE-EEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE------S-GGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCcee-EEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEE-----ECHHHHHHHHH
Confidence 455555555543 2 1134 6644 77 666655544333444432321223346999876 56666778888
Q ss_pred HHHHHcCCCCEEEE
Q 041308 148 NYYKALLAGRKLIA 161 (244)
Q Consensus 148 ~~~~~L~pgG~lii 161 (244)
++ ..+.++..++-
T Consensus 80 ~i-~~~~~~~~vis 92 (96)
T PF03807_consen 80 EI-PHLLKGKLVIS 92 (96)
T ss_dssp HH-HHHHTTSEEEE
T ss_pred HH-hhccCCCEEEE
Confidence 88 66777666653
No 352
>PRK08818 prephenate dehydrogenase; Provisional
Probab=70.22 E-value=15 Score=32.41 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=45.8
Q ss_pred ceEEEEcC-C--ccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHH
Q 041308 67 KRLVDVGG-S--AGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 67 ~~vLDvG~-G--~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~ 143 (244)
.+|.=||+ | .|.++..+.+. .+.+ ++++|.. +. ...+..+.+..+|+|+++ .|.....
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-~~~~-V~g~D~~---------d~---~~~~~~~~v~~aDlVila-----vPv~~~~ 65 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-MQLE-VIGHDPA---------DP---GSLDPATLLQRADVLIFS-----APIRHTA 65 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCCE-EEEEcCC---------cc---ccCCHHHHhcCCCEEEEe-----CCHHHHH
Confidence 57888887 6 45566666655 3667 8999962 00 000111113346999877 5556677
Q ss_pred HHHHHHHHH---cCCCCEEE
Q 041308 144 LIMENYYKA---LLAGRKLI 160 (244)
Q Consensus 144 ~~l~~~~~~---L~pgG~li 160 (244)
.+++++... |+||..+.
T Consensus 66 ~~l~~l~~~~~~l~~~~iVt 85 (370)
T PRK08818 66 ALIEEYVALAGGRAAGQLWL 85 (370)
T ss_pred HHHHHHhhhhcCCCCCeEEE
Confidence 888888875 67865543
No 353
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=68.98 E-value=27 Score=31.22 Aligned_cols=96 Identities=13% Similarity=0.128 Sum_probs=53.5
Q ss_pred CcceEEEEcCC-ccHHHH-HHHHHcCCCCeEEEeec--hHHHHhCCCCCCeeEEeCCCCCC-CCcceEEEecccc-cc-C
Q 041308 65 GVKRLVDVGGS-AGDCLR-IILQKHCFICEGINFDL--PEVVAKAPSIPEVTHIGGDMFKS-IHVVDAIFMKWVL-TT-W 137 (244)
Q Consensus 65 ~~~~vLDvG~G-~G~~~~-~l~~~~p~~~~~~~~D~--~~~i~~a~~~~~i~~~~gd~~~~-~p~~D~v~~~~~l-h~-~ 137 (244)
...++|=||.| .|..+. +|++... -+ ++++.. ....+.|++.. ..+..-+=... ++++|+|+++-.- |. +
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~-~~-i~IaNRT~erA~~La~~~~-~~~~~l~el~~~l~~~DvVissTsa~~~ii 253 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV-KK-ITIANRTLERAEELAKKLG-AEAVALEELLEALAEADVVISSTSAPHPII 253 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC-CE-EEEEcCCHHHHHHHHHHhC-CeeecHHHHHHhhhhCCEEEEecCCCcccc
Confidence 35899999999 777644 4554432 24 677765 44444444433 33333222222 5667999977433 22 3
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC
Q 041308 138 TDDECKLIMENYYKALLAGRKLIACEPVLPDDS 170 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~ 170 (244)
+.. .+.+++++--+++++|.-.|.+.
T Consensus 254 ~~~-------~ve~a~~~r~~~livDiavPRdi 279 (414)
T COG0373 254 TRE-------MVERALKIRKRLLIVDIAVPRDV 279 (414)
T ss_pred CHH-------HHHHHHhcccCeEEEEecCCCCC
Confidence 332 23334444322888998777653
No 354
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=67.64 E-value=68 Score=27.63 Aligned_cols=93 Identities=11% Similarity=-0.007 Sum_probs=54.5
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe---CCCCCC----CCc--ceEEEec
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG---GDMFKS----IHV--VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~---gd~~~~----~p~--~D~v~~~ 131 (244)
..+..+||=.|+| .|..+..+++...--+ ++++|. +.-.+.+++..--.++. .|..+. .+. .|+|+-.
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~-Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASK-IIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 5667899999875 5667777777653224 777886 66666665432111111 111111 111 3766622
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
...+ ..++...+.+++||+++++-.
T Consensus 253 -----~g~~---~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 253 -----VGRP---ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -----CCCH---HHHHHHHHHhccCCEEEEECC
Confidence 2212 346777889999999998764
No 355
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=67.58 E-value=26 Score=31.30 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=58.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEec
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMK 131 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~ 131 (244)
+.+.+..+..-.+.+|+=+|+|. |......++.. +.+ ++++|. +.-.+.|+.. ..... +..+.+..+|+|+..
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~-ViV~d~d~~R~~~A~~~-G~~~~--~~~e~v~~aDVVI~a 264 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GAR-VIVTEVDPICALQAAME-GYEVM--TMEEAVKEGDIFVTT 264 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEECChhhHHHHHhc-CCEEc--cHHHHHcCCCEEEEC
Confidence 44555444223568999999984 65555566544 457 888998 7666666543 22222 121113345988864
Q ss_pred cccccCCHHHHHHHHHH-HHHHcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMEN-YYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~-~~~~L~pgG~lii~d~ 164 (244)
-- . ..++.. ..+.+|+||+++.+-.
T Consensus 265 tG-----~---~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 265 TG-----N---KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CC-----C---HHHHHHHHHhcCCCCcEEEEeCC
Confidence 21 1 234554 4889999999987753
No 356
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=67.02 E-value=20 Score=36.37 Aligned_cols=97 Identities=12% Similarity=0.005 Sum_probs=55.7
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-C---CcceEEE
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-I---HVVDAIF 129 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~---p~~D~v~ 129 (244)
+....+ +.+..++||+|.|.-. .++...| +.- ++.+|. |-.....-=...-.|+.+|+..+ + ..+|.+.
T Consensus 814 ~~~~~~-~~~~~~~lDLGTGPE~---RiLsliP~~~p-vtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vt 888 (1289)
T PF06016_consen 814 ILSQTV-RTDPDHWLDLGTGPEC---RILSLIPPDTP-VTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVT 888 (1289)
T ss_dssp HHCCCT-TCCC-CEEEET--TT----CHHHCS-TTSE-EEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEE
T ss_pred hhhccc-ccCcceEEEccCCccc---eeeeccCCCCc-eEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEE
Confidence 333343 5567899999988763 3444445 455 999998 64433222236789999999987 2 2359999
Q ss_pred eccccccCC---HHHHHHHHHHHHHHcCCCC
Q 041308 130 MKWVLTTWT---DDECKLIMENYYKALLAGR 157 (244)
Q Consensus 130 ~~~~lh~~~---~~~~~~~l~~~~~~L~pgG 157 (244)
+.+.|..-. .-.....++++.+.+++.|
T Consensus 889 ailSLGAAaA~a~~tl~~~l~~~l~~~~~~~ 919 (1289)
T PF06016_consen 889 AILSLGAAAASANVTLDAGLQQFLSQCVQAN 919 (1289)
T ss_dssp ECTCHHHHHHHCT--HHHHHHHHHHHHHCTT
T ss_pred EEeeehhhhhcCCCcHHHHHHHHHHHHHhCC
Confidence 988885311 1223567788887777753
No 357
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=66.98 E-value=19 Score=31.81 Aligned_cols=88 Identities=11% Similarity=0.004 Sum_probs=56.4
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhC-----CCC----CCeeEEeCCCCCCCCcc-eEEEeccccccC
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKA-----PSI----PEVTHIGGDMFKSIHVV-DAIFMKWVLTTW 137 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a-----~~~----~~i~~~~gd~~~~~p~~-D~v~~~~~lh~~ 137 (244)
+||=++=.-|.++..++...|. ..-|. .+.+.+ +.+ +.+++ .+..+++|.. |+|++..-=.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~----~~~ds-~~~~~~~~~n~~~n~~~~~~~~~--~~~~~~~~~~~d~vl~~~PK~-- 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY----SIGDS-YISELATRENLRLNGIDESSVKF--LDSTADYPQQPGVVLIKVPKT-- 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC----eeehH-HHHHHHHHHHHHHcCCCccccee--ecccccccCCCCEEEEEeCCC--
Confidence 8999999999999999965442 22353 121111 111 12333 3445556664 9888764321
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 138 TDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
-......|..+++.|.||+.++..+..
T Consensus 118 -~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 118 -LALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred -HHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 244567789999999999998876653
No 358
>PRK13699 putative methylase; Provisional
Probab=66.53 E-value=9.1 Score=31.14 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=37.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~ 107 (244)
++.++..+. .++..|||.=||+|..+.+..+.. -+ ++++|+ +...+.+.+
T Consensus 153 ~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~~--r~-~~g~e~~~~y~~~~~~ 203 (227)
T PRK13699 153 LQPLIESFT--HPNAIVLDPFAGSGSTCVAALQSG--RR-YIGIELLEQYHRAGQQ 203 (227)
T ss_pred HHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHcC--CC-EEEEecCHHHHHHHHH
Confidence 444555543 456899999999999999888754 34 899999 877777764
No 359
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=66.28 E-value=74 Score=27.58 Aligned_cols=92 Identities=14% Similarity=0.061 Sum_probs=54.5
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEe---CCCCCC----CCc-ceEEEec
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIG---GDMFKS----IHV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~---gd~~~~----~p~-~D~v~~~ 131 (244)
..+..+||=.|+| .|..+..+++.. +. + ++++|. +.-.+.+++..--.++. .|..+. .+. .|+|+-.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~-Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~ 266 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA-GASQ-VVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEM 266 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCc-EEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEEC
Confidence 5667888888875 566777777765 44 5 788887 77777665532111111 111111 111 3766632
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.... ..+..+.+.|++||+++++-.
T Consensus 267 -----~G~~---~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 267 -----AGSV---PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -----CCCh---HHHHHHHHHHhcCCEEEEEcc
Confidence 1111 356778889999999998764
No 360
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=65.77 E-value=26 Score=33.71 Aligned_cols=149 Identities=10% Similarity=-0.046 Sum_probs=80.7
Q ss_pred CcceEEEEcCCccH--HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------------------CCeeEEeCCC
Q 041308 65 GVKRLVDVGGSAGD--CLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------------------PEVTHIGGDM 118 (244)
Q Consensus 65 ~~~~vLDvG~G~G~--~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------------------~~i~~~~gd~ 118 (244)
+..+|.=||+|+=. ++..++. .+.. ++..|. ++.++.+.+. .++++. .|+
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~--~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 387 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSAS--KGVP-VIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY 387 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHh--CCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH
Confidence 34689999999733 3333443 3567 999998 7776554321 355543 333
Q ss_pred CCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhh--------h--
Q 041308 119 FKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVM--------T-- 188 (244)
Q Consensus 119 ~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~--------~-- 188 (244)
+.+..+|+|+=. +...+.- ..++++++-+.++|+..|......++-..-.....+-.+...+... .
T Consensus 388 -~~~~~aDlViEa-v~E~l~~--K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEv 463 (715)
T PRK11730 388 -AGFERVDVVVEA-VVENPKV--KAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEV 463 (715)
T ss_pred -HHhcCCCEEEec-ccCcHHH--HHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEe
Confidence 334456877633 4444333 4588999999999987776544433311000000000011111000 0
Q ss_pred hhccCceecCHHHHHHHHHhCCCCeEEEEEccc
Q 041308 189 IYRAKGKHKTEQEFKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 189 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 221 (244)
.........+.+...++++..|...+.+.+.++
T Consensus 464 v~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG 496 (715)
T PRK11730 464 IRGEKTSDETIATVVAYASKMGKTPIVVNDCPG 496 (715)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCceEEecCcCc
Confidence 000112233556778899999999888866554
No 361
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=65.73 E-value=33 Score=29.49 Aligned_cols=92 Identities=11% Similarity=-0.025 Sum_probs=54.0
Q ss_pred CCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec----hHHHHhCCCCCCeeEEe---CCCCC--CCCcceEEEeccc
Q 041308 64 KGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL----PEVVAKAPSIPEVTHIG---GDMFK--SIHVVDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~----~~~i~~a~~~~~i~~~~---gd~~~--~~p~~D~v~~~~~ 133 (244)
....+||=+|+| .|.++..+++.. +.+ +++++. +.-.+.+++.. .+++. .|..+ .....|+|+-.-
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~-vi~~~~~~~~~~~~~~~~~~G-a~~v~~~~~~~~~~~~~~~~d~vid~~- 246 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFE-VYVLNRRDPPDPKADIVEELG-ATYVNSSKTPVAEVKLVGEFDLIIEAT- 246 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCe-EEEEecCCCCHHHHHHHHHcC-CEEecCCccchhhhhhcCCCCEEEECc-
Confidence 456789988876 577788888775 457 888874 44444444431 12211 11100 011237666432
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
..+ ..+....+.|++||+++++-...
T Consensus 247 ----g~~---~~~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 247 ----GVP---PLAFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred ----CCH---HHHHHHHHHccCCcEEEEEecCC
Confidence 111 35778889999999999876543
No 362
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=64.89 E-value=4.4 Score=30.76 Aligned_cols=89 Identities=11% Similarity=0.101 Sum_probs=46.8
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC---C----------CCeeEEeCCCCCCCCcceEEEeccc
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS---I----------PEVTHIGGDMFKSIHVVDAIFMKWV 133 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~---~----------~~i~~~~gd~~~~~p~~D~v~~~~~ 133 (244)
+|.=+|+|.+..+.+..-..-..+ ++.... ++.++..++ + .++.+ ..|+.+-+..+|+|++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~-V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~Iiia-- 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHE-VTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIA-- 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEE-EEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE---
T ss_pred CEEEECcCHHHHHHHHHHHHcCCE-EEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEec--
Confidence 356688887776555333322334 777776 544443332 1 23332 22331113446888765
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+......+++++...++++-.+++.-
T Consensus 77 ---vPs~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 77 ---VPSQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp ---S-GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred ---ccHHHHHHHHHHHhhccCCCCEEEEec
Confidence 333334577888888887777777643
No 363
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.88 E-value=34 Score=28.71 Aligned_cols=88 Identities=13% Similarity=0.013 Sum_probs=48.7
Q ss_pred ceEEEEcCCccHH--HHHHHHHcCCCCeEEEeec-hHHHHhCCCC------------------------CCeeEEeCCCC
Q 041308 67 KRLVDVGGSAGDC--LRIILQKHCFICEGINFDL-PEVVAKAPSI------------------------PEVTHIGGDMF 119 (244)
Q Consensus 67 ~~vLDvG~G~G~~--~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------------------------~~i~~~~gd~~ 119 (244)
.+|.=||+|+=.. +..+++ .+.+ ++++|. +..++.+++. .++++ ..|+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~-V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~ 79 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFD-VTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLA 79 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHH
Confidence 5678888884333 333333 3456 888898 6655554321 23332 22322
Q ss_pred CCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 120 KSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 120 ~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+.+..+|+|+..-. .. .+....+++++.+.++|+-.++.
T Consensus 80 ~a~~~aDlVieavp-e~--~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 80 EAVKDADLVIEAVP-ED--PEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred HHhcCCCEEEEecc-CC--HHHHHHHHHHHHhhCCCCCEEEE
Confidence 22344688886532 11 22356788999888877665544
No 364
>PRK07680 late competence protein ComER; Validated
Probab=64.51 E-value=27 Score=29.04 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=48.5
Q ss_pred eEEEEcCCc--cHHHHHHHHHcC-C-CCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCCCcceEEEeccccccCCHHH
Q 041308 68 RLVDVGGSA--GDCLRIILQKHC-F-ICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 68 ~vLDvG~G~--G~~~~~l~~~~p-~-~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~ 141 (244)
+|.=||||. +.++..+.+... . -. +++.|. +.-.+...+. ..+... .|..+....+|+|++. .++.+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~-v~v~~r~~~~~~~~~~~~~g~~~~-~~~~~~~~~aDiVila-----v~p~~ 74 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQ-LTITNRTPAKAYHIKERYPGIHVA-KTIEEVISQSDLIFIC-----VKPLD 74 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcce-EEEECCCHHHHHHHHHHcCCeEEE-CCHHHHHHhCCEEEEe-----cCHHH
Confidence 355677764 334555554431 1 24 777887 5444433321 234332 2221113345988765 46677
Q ss_pred HHHHHHHHHHHcCCCCEEEEe
Q 041308 142 CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii~ 162 (244)
...+++++...++++..++.+
T Consensus 75 ~~~vl~~l~~~l~~~~~iis~ 95 (273)
T PRK07680 75 IYPLLQKLAPHLTDEHCLVSI 95 (273)
T ss_pred HHHHHHHHHhhcCCCCEEEEE
Confidence 778888888888887755543
No 365
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=64.48 E-value=34 Score=26.19 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=39.6
Q ss_pred CcceEEEEcCCccHH-HHHHHHHcCCCCeEEEeechHHHHhCCCC--CCeeEEeCCCCCCCCcceEEEeccccccCCHHH
Q 041308 65 GVKRLVDVGGSAGDC-LRIILQKHCFICEGINFDLPEVVAKAPSI--PEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~-~~~l~~~~p~~~~~~~~D~~~~i~~a~~~--~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~ 141 (244)
.+.+|.=.|+|+... ...++...++.- ..++|... ....+-. ..+.++.-+.+... ..|.|++.. .++ .
T Consensus 67 ~gk~I~~yGA~~kg~tlln~~g~~~~~I-~~vvD~np-~K~G~~~PGt~ipI~~p~~l~~~-~pd~vivla-w~y-~--- 138 (160)
T PF08484_consen 67 EGKRIAGYGAGAKGNTLLNYFGLDNDLI-DYVVDDNP-LKQGKYLPGTHIPIVSPEELKER-KPDYVIVLA-WNY-K--- 138 (160)
T ss_dssp TT--EEEE---SHHHHHHHHHT--TTTS---EEES-G-GGTTEE-TTT--EEEEGGG--SS---SEEEES--GGG-H---
T ss_pred cCCEEEEECcchHHHHHHHHhCCCccee-EEEEeCCh-hhcCcccCCCCCeECCHHHHhhC-CCCEEEEcC-hhh-H---
Confidence 458899999886655 455665545533 35567521 1222211 34555554332221 126655432 222 2
Q ss_pred HHHHHHHHHHHcCCCCEEEE
Q 041308 142 CKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii 161 (244)
..+++++.+.++.||+|++
T Consensus 139 -~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 139 -DEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp -HHHHHHTHHHHHTT-EEEE
T ss_pred -HHHHHHHHHHHhcCCEEEE
Confidence 3677888888899999997
No 366
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=64.48 E-value=31 Score=28.76 Aligned_cols=89 Identities=6% Similarity=-0.009 Sum_probs=49.9
Q ss_pred ceEEEEcCCc--cHHHHHHHHHc--CCCCeEEEeec-h-HHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHH
Q 041308 67 KRLVDVGGSA--GDCLRIILQKH--CFICEGINFDL-P-EVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDD 140 (244)
Q Consensus 67 ~~vLDvG~G~--G~~~~~l~~~~--p~~~~~~~~D~-~-~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~ 140 (244)
.+|.=||||. +.++..+++.. +..+ +++.|. + ...+.......++. ..|..+....+|+|++. ++++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~-v~v~~r~~~~~~~~l~~~~g~~~-~~~~~e~~~~aDvVila-----v~p~ 76 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQ-ITVSNRSNETRLQELHQKYGVKG-THNKKELLTDANILFLA-----MKPK 76 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcce-EEEECCCCHHHHHHHHHhcCceE-eCCHHHHHhcCCEEEEE-----eCHH
Confidence 4677788772 34555555543 2234 777776 3 33333222223332 22221112345988865 5667
Q ss_pred HHHHHHHHHHHHcCCCCEEEEe
Q 041308 141 ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+...+++++...++++..++-+
T Consensus 77 ~~~~vl~~l~~~~~~~~liIs~ 98 (279)
T PRK07679 77 DVAEALIPFKEYIHNNQLIISL 98 (279)
T ss_pred HHHHHHHHHHhhcCCCCEEEEE
Confidence 7778889998888887666554
No 367
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=64.46 E-value=25 Score=33.88 Aligned_cols=151 Identities=9% Similarity=-0.075 Sum_probs=81.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------------------CCeeEEeCCCCC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------------------PEVTHIGGDMFK 120 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------------------~~i~~~~gd~~~ 120 (244)
+..+|-=||+|+=.-.++.+-...+.. ++..|. ++.++.+++. .++++. .|+ +
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 388 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTP-IVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY-A 388 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-H
Confidence 456899999985443333333334667 999998 7776654321 345543 233 3
Q ss_pred CCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhh--------h--hh
Q 041308 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVM--------T--IY 190 (244)
Q Consensus 121 ~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~--------~--~~ 190 (244)
.+..+|+|+=. +...+.- ..++++++-+.++|+..|.-....++-..-.....+-.+...+... . ..
T Consensus 389 ~~~~aDlViEa-v~E~l~~--K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~ 465 (714)
T TIGR02437 389 GFDNVDIVVEA-VVENPKV--KAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIR 465 (714)
T ss_pred HhcCCCEEEEc-CcccHHH--HHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecC
Confidence 34456877743 5555444 3589999999999987776644433321000000000011111100 0 00
Q ss_pred ccCceecCHHHHHHHHHhCCCCeEEEEEccc
Q 041308 191 RAKGKHKTEQEFKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 191 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 221 (244)
.......+.+...+++++.|-..+.+.+.++
T Consensus 466 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG 496 (714)
T TIGR02437 466 GEKSSDETIATVVAYASKMGKTPIVVNDCPG 496 (714)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeCCccc
Confidence 0112223456678889999988888865543
No 368
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=63.79 E-value=71 Score=27.25 Aligned_cols=90 Identities=11% Similarity=-0.065 Sum_probs=55.3
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCc-ceEEEeccccccCCH
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTD 139 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~ 139 (244)
.+++.+||=.|+| .|..+..+++.. +.+ +++++. +.-.+.+++..--.++ |..+..+. .|+++.....
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~-vi~~~~~~~~~~~a~~~Ga~~vi--~~~~~~~~~~d~~i~~~~~----- 233 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GAT-VHVMTRGAAARRLALALGAASAG--GAYDTPPEPLDAAILFAPA----- 233 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCe-EEEEeCChHHHHHHHHhCCceec--cccccCcccceEEEECCCc-----
Confidence 6677899999964 566677777764 567 888887 6666666654211111 11111112 3765533221
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 140 DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
. ..+....+.|++||+++++-.
T Consensus 234 ~---~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 G---GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred H---HHHHHHHHhhCCCcEEEEEec
Confidence 1 357888899999999998764
No 369
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=63.34 E-value=19 Score=30.98 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=61.2
Q ss_pred HhccCCCCCCcceEEEEc--CCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCC---CeeEEeCCCCCC----CCc--
Q 041308 56 VLDGYDGFKGVKRLVDVG--GSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIP---EVTHIGGDMFKS----IHV-- 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~---~i~~~~gd~~~~----~p~-- 124 (244)
+.+... +++..+||=.| +|.|.++..+++..-... ++...-++-.+.+++.. -+++...|+.+. ...
T Consensus 134 l~~~~~-l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~-v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 134 LFDRAG-LKPGETVLVHGAAGGVGSAAIQLAKALGATV-VAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred HHHhcC-CCCCCEEEEecCCchHHHHHHHHHHHcCCcE-EEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 334344 77789999999 578889999999875422 33333344444555442 234444444332 122
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
.|+|+-. ... ..+.+..+.|+++|+++.+-...
T Consensus 212 vDvv~D~-----vG~----~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 212 VDVVLDT-----VGG----DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred ceEEEEC-----CCH----HHHHHHHHHhccCCEEEEEecCC
Confidence 3877633 222 45677888999999999987654
No 370
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=63.20 E-value=20 Score=32.12 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=67.6
Q ss_pred CcceEEEEc-CCc------cHHHHHHHHHcCCCCeEEEeec--hHHHHhCCCC---CCeeEEeCCCC-CCC--C------
Q 041308 65 GVKRLVDVG-GSA------GDCLRIILQKHCFICEGINFDL--PEVVAKAPSI---PEVTHIGGDMF-KSI--H------ 123 (244)
Q Consensus 65 ~~~~vLDvG-~G~------G~~~~~l~~~~p~~~~~~~~D~--~~~i~~a~~~---~~i~~~~gd~~-~~~--p------ 123 (244)
++..||=+| -|+ |-++..+.++.-.+- ++.+|. |..++..+.. -++.|..-+-. +|. .
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvl-lVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVL-LVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceE-EEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 457788887 243 344555555444555 688897 8888877753 45665543221 221 1
Q ss_pred ---c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 124 ---V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 124 ---~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
. .|+|++--.=.|--|++.-.=++++.++++|.-.|+++|.....+
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd 227 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD 227 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH
Confidence 0 288887655444345556677899999999999999999877655
No 371
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=62.89 E-value=10 Score=32.46 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 141 ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+...+|..+.+.|+|||+++++..
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISf 241 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISF 241 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEec
Confidence 455689999999999999999876
No 372
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=62.22 E-value=9.4 Score=31.27 Aligned_cols=79 Identities=11% Similarity=0.155 Sum_probs=44.7
Q ss_pred HHHhccCCCCCCc--ceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHH-hCC-------C---C-----CCeeEEe
Q 041308 54 TSVLDGYDGFKGV--KRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVA-KAP-------S---I-----PEVTHIG 115 (244)
Q Consensus 54 ~~l~~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~-~a~-------~---~-----~~i~~~~ 115 (244)
+.+++... +++. .+|||+=+|-|.=+.-++.. +.+ +++++...++. ..+ . . .|++++.
T Consensus 63 ~~l~kA~G-lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~-V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 63 DPLAKAVG-LKPGMRPSVLDATAGLGRDAFVLASL--GCK-VTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp SHHHHHTT--BTTB---EEETT-TTSHHHHHHHHH--T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred cHHHHHhC-CCCCCCCEEEECCCcchHHHHHHHcc--CCe-EEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 34666664 5554 49999999999988888765 457 99999732321 111 1 1 5899999
Q ss_pred CCCCCCCC--c--ceEEEecccccc
Q 041308 116 GDMFKSIH--V--VDAIFMKWVLTT 136 (244)
Q Consensus 116 gd~~~~~p--~--~D~v~~~~~lh~ 136 (244)
+|..+.++ . .|+|.+--++.+
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--S---
T ss_pred CCHHHHHhhcCCCCCEEEECCCCCC
Confidence 99987643 2 499998877754
No 373
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=62.07 E-value=15 Score=27.37 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=25.9
Q ss_pred ceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeec
Q 041308 194 GKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSK 229 (244)
Q Consensus 194 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~ 229 (244)
++.....+++++|+++||+.+++.--.++..+-...
T Consensus 16 ~nki~MaeLr~~l~~~Gf~~V~Tyi~SGNvvf~~~~ 51 (137)
T PF08002_consen 16 KNKIKMAELREALEDLGFTNVRTYIQSGNVVFESDR 51 (137)
T ss_dssp BS---HHHHHHHHHHCT-EEEEEETTTTEEEEEESS
T ss_pred CCcccHHHHHHHHHHcCCCCceEEEeeCCEEEecCC
Confidence 355678999999999999999987777777666333
No 374
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=62.00 E-value=59 Score=29.13 Aligned_cols=105 Identities=10% Similarity=-0.032 Sum_probs=61.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC----CCc-ceEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS----IHV-VDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~----~p~-~D~v~ 129 (244)
..++.||||.++.+|.=+.+++..-.+ .. +++.|. .+-+...+.+ .+..+...|..+. +|. .|=|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~-I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGV-IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCce-EEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceee
Confidence 456789999999998877777765433 23 566674 4444333332 4455555665421 222 24333
Q ss_pred ecccc---------------------ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 130 MKWVL---------------------TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 130 ~~~~l---------------------h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
+-.-+ -.+..- .+++|-.+...++|||+|+-..+.+...
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~L-Qr~LllsAi~lv~~GGvLVYSTCSI~~~ 377 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHL-QRELLLSAIDLVKAGGVLVYSTCSITVE 377 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHH-HHHHHHHHHhhccCCcEEEEEeeecchh
Confidence 21111 001111 2468888999999999999888766544
No 375
>PF03574 Peptidase_S48: Peptidase family S48; InterPro: IPR005319 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases, which includes HetR, are associated with heterocystous cyanobacteria and belong to MEROPS peptidase family S48 (clan S-). HetR is a DNA-binding serine-type protease required for heterocyst differentiation in heterocystous cyanobacteria under conditions of nitrogen deprivation. Mutation of HetR from of Anabaena sp. (strain PCC 7120) by site-specific mutagenesis of Ser-152 showed that this residue was one of the peptidase active site residues. It was suggested that peptidase activity might be needed for repression of HetR overproduction under conditions of nitrogen deprivation []. Modification of Cys-48 prevented disulphide-bond formation and homodimerisation of HetR and DNA-binding. The homodimer of HetR binds the promoter regions of hetR, hepA, and patS, suggesting a direct control of the expression of these genes by HetR. The pentapeptide RGSGR, which is present at the C terminus of PatS, blocks heterocyst formation, inhibits the DNA binding of HetR and prevents hetR up-regulation [].; GO: 0003677 DNA binding, 0004252 serine-type endopeptidase activity, 0043158 heterocyst differentiation; PDB: 3QOE_A 3QOD_A.
Probab=61.87 E-value=8.1 Score=28.01 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=20.6
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
-|||+.++.+..+..+++.+|..|..+-..
T Consensus 13 HLHHiEPKRVKvIVeEv~qaltegklLkml 42 (149)
T PF03574_consen 13 HLHHIEPKRVKVIVEEVRQALTEGKLLKML 42 (149)
T ss_dssp HHTT--HHHHHHHHHHHHHHHSSS-----S
T ss_pred cccccCchhhhhHHHHHHHHHhhhhHHHHh
Confidence 479999999999999999999888776553
No 376
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=61.54 E-value=23 Score=31.04 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=65.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCC---CCc--------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKS---IHV-------- 124 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~---~p~-------- 124 (244)
+..+++|.+|+.+.....+.+.++-++ --+++. ...+..+... ..+++..||++.. ...
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~k-pGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~ 258 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLK-PGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSF 258 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccC-CCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhc
Confidence 357999999999999999999987776 556665 5455444321 2355566665422 000
Q ss_pred --------ceEEEe----------ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 125 --------VDAIFM----------KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 125 --------~D~v~~----------~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
-|+... ..+.-|+.+. ..++......++|+|.+++.+.....+
T Consensus 259 ~~~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~--~~~f~~~~~~~~~~~~v~~~e~~~~~p 319 (364)
T KOG1269|consen 259 GFEHLKLEKDLALKSSFPWNTPLTRDTITHWQDK--SALFRGRVATLKPGGKVLILEYIRGLP 319 (364)
T ss_pred cchhhhhcccccCCCccccccccchhheeecccc--cHHHHhHhhccCcCceEEehhhcCcCC
Confidence 011111 2233444443 467888999999999999999876654
No 377
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=60.79 E-value=77 Score=26.80 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=51.2
Q ss_pred CcceEEEEcCCc-cHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeCC---CCCCC--Cc-ceEEEeccccc
Q 041308 65 GVKRLVDVGGSA-GDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGGD---MFKSI--HV-VDAIFMKWVLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~-G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~gd---~~~~~--p~-~D~v~~~~~lh 135 (244)
+..+||-.|+|. |..+..+++.. +. + +++++. +...+.+++...-.++..+ ..+.. .. .|+++-...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~-v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g-- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAE-IVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG-- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcE-EEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC--
Confidence 568898888765 66777777765 44 5 777776 5555544432211122111 10111 11 377664322
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.. ..++++.+.|+++|+++.+.
T Consensus 241 ---~~---~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 ---AP---AALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ---CH---HHHHHHHHHHhcCCEEEEEe
Confidence 11 34678889999999999764
No 378
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=60.36 E-value=44 Score=29.89 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=52.5
Q ss_pred eEEEEcCCccHHHHHHHHHcC--CCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEeccccccC
Q 041308 68 RLVDVGGSAGDCLRIILQKHC--FICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTTW 137 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p--~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~~ 137 (244)
+|+=+|+ |.++..+++... +.. ++++|. +..++..++...+.++.||..+. + ..+|.+++..
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~-v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~----- 73 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENND-VTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT----- 73 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec-----
Confidence 4566666 677777776532 456 899998 77777666545688888998764 2 2247666542
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 138 TDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
++++.-..+....+.+.|.-.+++
T Consensus 74 ~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 74 DSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred CChHHHHHHHHHHHHhcCCCeEEE
Confidence 223333344555666656555554
No 379
>PRK09273 hypothetical protein; Provisional
Probab=60.05 E-value=8.5 Score=30.89 Aligned_cols=48 Identities=13% Similarity=-0.026 Sum_probs=33.7
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEe
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIG 115 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~ 115 (244)
...-=++||||.=..-.+.++|+++ +-.+--+.....+++..+.++++
T Consensus 64 ~d~GIliCGTGiG~siAANK~pGIr-aalc~d~~sA~lar~hNnaNVL~ 111 (211)
T PRK09273 64 VDFVVTGCGTGQGAMLALNSFPGVV-CGYCIDPTDAYLFAQINNGNALS 111 (211)
T ss_pred CCEEEEEcCcHHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHhcCCcEEE
Confidence 4456678999999999999999998 65554455555666654444444
No 380
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=59.81 E-value=9.3 Score=29.13 Aligned_cols=112 Identities=14% Similarity=0.138 Sum_probs=57.5
Q ss_pred EEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHH
Q 041308 69 LVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLI 145 (244)
Q Consensus 69 vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~ 145 (244)
|-=||. |.....++++. .+.+ +++.|. ++..+...+. .+... .+..+-....|+|++.. -++++...+
T Consensus 4 Ig~IGl--G~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~~-g~~~~-~s~~e~~~~~dvvi~~v----~~~~~v~~v 74 (163)
T PF03446_consen 4 IGFIGL--GNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAEA-GAEVA-DSPAEAAEQADVVILCV----PDDDAVEAV 74 (163)
T ss_dssp EEEE----SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHHT-TEEEE-SSHHHHHHHBSEEEE-S----SSHHHHHHH
T ss_pred EEEEch--HHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHHh-hhhhh-hhhhhHhhcccceEeec----ccchhhhhh
Confidence 334555 45544544442 2345 888898 6665554432 33322 11111112248887552 224556777
Q ss_pred HHH--HHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEE
Q 041308 146 MEN--YYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 146 l~~--~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 218 (244)
+.. +...|++|..++-.....+ .+..++.+.+++.|...++.--
T Consensus 75 ~~~~~i~~~l~~g~iiid~sT~~p-----------------------------~~~~~~~~~~~~~g~~~vdapV 120 (163)
T PF03446_consen 75 LFGENILAGLRPGKIIIDMSTISP-----------------------------ETSRELAERLAAKGVRYVDAPV 120 (163)
T ss_dssp HHCTTHGGGS-TTEEEEE-SS--H-----------------------------HHHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhhHHhhccccceEEEecCCcch-----------------------------hhhhhhhhhhhhccceeeeeee
Confidence 887 8888888666654332111 1245677788888877666643
No 381
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=59.81 E-value=1.3e+02 Score=26.88 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=49.0
Q ss_pred ceEEEEcCCccH--HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEE-------------eCCCC--CCCCcceEE
Q 041308 67 KRLVDVGGSAGD--CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHI-------------GGDMF--KSIHVVDAI 128 (244)
Q Consensus 67 ~~vLDvG~G~G~--~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~-------------~gd~~--~~~p~~D~v 128 (244)
.+|.=||.|.-. ++..|++.. .+ ++++|. +..++..+. ..+.+. .|... .+...+|+|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G--~~-V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvv 79 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ--KQ-VIGVDINQHAVDTINR-GEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAF 79 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC--CE-EEEEeCCHHHHHHHHC-CCCCcCCCCHHHHHHHHhhcCceeeecccccCCEE
Confidence 467777887433 344455543 45 899998 776665332 111110 01110 112235887
Q ss_pred Eeccccc-----cCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 129 FMKWVLT-----TWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 129 ~~~~~lh-----~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+++---- ...-......++.+.+.|++|..+++...
T Consensus 80 ii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 80 LIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred EEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 7653321 01113455677889999988655554433
No 382
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=59.52 E-value=17 Score=27.58 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=50.6
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeech-HHHHhCCCCCCeeEEeCCCCCCCCc----c-eEEE--eccccccCC
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDLP-EVVAKAPSIPEVTHIGGDMFKSIHV----V-DAIF--MKWVLTTWT 138 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~-~~i~~a~~~~~i~~~~gd~~~~~p~----~-D~v~--~~~~lh~~~ 138 (244)
.-|||+|=|.|..=-++.+.+|+-+ +.++|.. ..-..+.. +.-.++.||+.+.+|. + .+.+ .-.-.|+ .
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~-I~vfDR~l~~hp~~~P-~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~-~ 106 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRR-IYVFDRALACHPSSTP-PEEDLILGDIRETLPALARFGAGAALAHADIGTGD-K 106 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS--EEEEESS--S-GGG----GGGEEES-HHHHHHHHHHH-S-EEEEEE----S--H
T ss_pred CceEEeccCCCccHHHHHHhCCCCe-EEEEeeecccCCCCCC-chHheeeccHHHHhHHHHhcCCceEEEEeecCCCC-c
Confidence 7899999999999999999999988 9999962 22122221 4557888998776543 1 3333 3233332 2
Q ss_pred HHH---HHHHHHHHHHHcCCCCEEEEeccc
Q 041308 139 DDE---CKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 139 ~~~---~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+++ +..+---+..+|.|||.++.-...
T Consensus 107 ~~d~a~a~~lspli~~~la~gGi~vS~~pl 136 (160)
T PF12692_consen 107 EKDDATAAWLSPLIAPVLAPGGIMVSGQPL 136 (160)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEEESS--
T ss_pred chhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 221 112223456778899988875543
No 383
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=59.02 E-value=32 Score=30.28 Aligned_cols=73 Identities=7% Similarity=-0.019 Sum_probs=38.7
Q ss_pred CcceEEEEc-CC-c-cHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHH
Q 041308 65 GVKRLVDVG-GS-A-GDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 65 ~~~~vLDvG-~G-~-G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~ 141 (244)
...+|.=|| .| - |.++..+.+.. .. +++.|.... .+..+....+|+|+++ .+...
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G--~~-V~~~d~~~~--------------~~~~~~~~~aDlVila-----vP~~~ 154 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSG--YQ-VRILEQDDW--------------DRAEDILADAGMVIVS-----VPIHL 154 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCC--Ce-EEEeCCCcc--------------hhHHHHHhcCCEEEEe-----CcHHH
Confidence 346788887 33 2 33444444433 34 777775210 0000012335888866 45555
Q ss_pred HHHHHHHHHHHcCCCCEEE
Q 041308 142 CKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~li 160 (244)
...+++++.. ++||..++
T Consensus 155 ~~~~~~~l~~-l~~~~iv~ 172 (374)
T PRK11199 155 TEEVIARLPP-LPEDCILV 172 (374)
T ss_pred HHHHHHHHhC-CCCCcEEE
Confidence 6677787777 77755443
No 384
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=58.80 E-value=13 Score=31.57 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 141 ECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+...+|..+.++|+|||+++++..-
T Consensus 222 ~L~~~L~~a~~~L~~gGRl~VIsFH 246 (314)
T COG0275 222 ELEEALEAALDLLKPGGRLAVISFH 246 (314)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEEec
Confidence 4667899999999999999998764
No 385
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=57.71 E-value=11 Score=28.33 Aligned_cols=45 Identities=11% Similarity=-0.062 Sum_probs=32.1
Q ss_pred EEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEe
Q 041308 70 VDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIG 115 (244)
Q Consensus 70 LDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~ 115 (244)
==+.||||.=..-.+.++|+++ +..+--+.....+++..+.++++
T Consensus 60 GIliCGtGiG~siaANK~~GIr-aa~~~d~~~A~~ar~hNnaNvl~ 104 (143)
T TIGR01120 60 GILICGTGIGMSIAANKFAGIR-AALCSEPYMAQMSRLHNDANVLC 104 (143)
T ss_pred EEEEcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHhcCCcEEE
Confidence 3456888887788889999999 76665566767777655555544
No 386
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=57.29 E-value=14 Score=31.37 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 141 ECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+...+|..+...|+|||+++++..-
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfH 238 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFH 238 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecC
Confidence 4567899999999999999998763
No 387
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=56.87 E-value=36 Score=28.86 Aligned_cols=87 Identities=10% Similarity=0.045 Sum_probs=49.6
Q ss_pred CcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC-CCCCCCCcceEEEeccccccCCHHH
Q 041308 65 GVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG-DMFKSIHVVDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 65 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g-d~~~~~p~~D~v~~~~~lh~~~~~~ 141 (244)
.+.+++=+|.| .|..+...++.. +.+ ++++|. +...+.++.. .+++..- +..+.+..+|+|+..- +..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~-V~v~~r~~~~~~~~~~~-G~~~~~~~~l~~~l~~aDiVI~t~-----p~~- 221 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GAN-VTVGARKSAHLARITEM-GLSPFHLSELAEEVGKIDIIFNTI-----PAL- 221 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCE-EEEEECCHHHHHHHHHc-CCeeecHHHHHHHhCCCCEEEECC-----Chh-
Confidence 35899999986 455555555554 457 899998 6555444432 2333211 1111144569988642 211
Q ss_pred HHHHHHHHHHHcCCCCEEEEe
Q 041308 142 CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii~ 162 (244)
.+-++..+.++||+.++-+
T Consensus 222 --~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 222 --VLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred --hhhHHHHHcCCCCcEEEEE
Confidence 2345667788998866643
No 388
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=56.76 E-value=75 Score=28.39 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=55.3
Q ss_pred hHHHhccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEe
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFM 130 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~ 130 (244)
.+.+.+..+..-.+.+|+=+|+|. |......++.. +.+ ++++|. |.....+.. ....+ .++.+.+..+|+|+.
T Consensus 182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~-ViV~d~dp~r~~~A~~-~G~~v--~~leeal~~aDVVIt 256 (406)
T TIGR00936 182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGM-GAR-VIVTEVDPIRALEAAM-DGFRV--MTMEEAAKIGDIFIT 256 (406)
T ss_pred HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhC-cCE-EEEEeCChhhHHHHHh-cCCEe--CCHHHHHhcCCEEEE
Confidence 344554433123468999999884 55555555543 567 888887 543333332 22222 222112444698875
Q ss_pred ccccccCCHHHHHHHHH-HHHHHcCCCCEEEEecc
Q 041308 131 KWVLTTWTDDECKLIME-NYYKALLAGRKLIACEP 164 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~-~~~~~L~pgG~lii~d~ 164 (244)
.- .. ..++. +....+|||++++.+-.
T Consensus 257 aT-----G~---~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 257 AT-----GN---KDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred CC-----CC---HHHHHHHHHhcCCCCcEEEEECC
Confidence 32 11 34454 47788999999987644
No 389
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=56.41 E-value=47 Score=32.00 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=46.8
Q ss_pred ceEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHH
Q 041308 67 KRLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 67 ~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~ 143 (244)
.+|.=||+|. +.++..+.+.....+ ++++|. +..++.+++..-..-...|..+.+..+|+|++. .++....
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~-V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 77 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLARE-VVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLA-----VPVLAME 77 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCE-EEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEEC-----CCHHHHH
Confidence 5677777663 334444444332235 888898 666555543221100111111113345888865 4445567
Q ss_pred HHHHHHHHHcCCCCEE
Q 041308 144 LIMENYYKALLAGRKL 159 (244)
Q Consensus 144 ~~l~~~~~~L~pgG~l 159 (244)
.+++++...++++-.+
T Consensus 78 ~vl~~l~~~~~~~~ii 93 (735)
T PRK14806 78 KVLADLKPLLSEHAIV 93 (735)
T ss_pred HHHHHHHHhcCCCcEE
Confidence 7888888888776433
No 390
>PLN02688 pyrroline-5-carboxylate reductase
Probab=56.28 E-value=48 Score=27.25 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=47.0
Q ss_pred eEEEEcCCc--cHHHHHHHHHc--CCCCeEEEe-ec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHH
Q 041308 68 RLVDVGGSA--GDCLRIILQKH--CFICEGINF-DL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 68 ~vLDvG~G~--G~~~~~l~~~~--p~~~~~~~~-D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~ 141 (244)
+|.=||||. +.++..+++.. +..+ +++. |. +...+.+.+ ..+.. ..+..+-...+|+|+++- +++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~-i~v~~~r~~~~~~~~~~-~g~~~-~~~~~e~~~~aDvVil~v-----~~~~ 73 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSR-ISTADDSNPARRDVFQS-LGVKT-AASNTEVVKSSDVIILAV-----KPQV 73 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcce-EEEEeCCCHHHHHHHHH-cCCEE-eCChHHHHhcCCEEEEEE-----CcHH
Confidence 355577773 44556666543 2235 7777 76 555444433 23332 112111122358887663 4566
Q ss_pred HHHHHHHHHHHcCCCCEEE
Q 041308 142 CKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~li 160 (244)
...+++.+...++||..++
T Consensus 74 ~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 74 VKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred HHHHHHHHHhhcCCCCEEE
Confidence 7788888887787776555
No 391
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=56.19 E-value=1.3e+02 Score=25.59 Aligned_cols=93 Identities=10% Similarity=0.049 Sum_probs=53.3
Q ss_pred ceEEEEcCC-ccH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe-CCCC---------CCCCcceEEEeccc
Q 041308 67 KRLVDVGGS-AGD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG-GDMF---------KSIHVVDAIFMKWV 133 (244)
Q Consensus 67 ~~vLDvG~G-~G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~-gd~~---------~~~p~~D~v~~~~~ 133 (244)
.+|+=+|+| -|. ++..|.+.. .. ++.++. ++.++..++...+.+.. ++.. +..+..|+|++.-=
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G--~~-V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG--LP-VRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC--CC-eEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECC
Confidence 468889987 344 566666543 45 888888 55555444322222211 1110 01223487775533
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
-+ +...+++.+...+.|+..++.......
T Consensus 80 ~~-----~~~~al~~l~~~l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 80 AY-----DAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred HH-----hHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence 22 234678889999999998887765444
No 392
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=55.81 E-value=58 Score=31.40 Aligned_cols=150 Identities=12% Similarity=0.035 Sum_probs=80.1
Q ss_pred CcceEEEEcCCccH--HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------------------CCeeEEeCCC
Q 041308 65 GVKRLVDVGGSAGD--CLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------------------PEVTHIGGDM 118 (244)
Q Consensus 65 ~~~~vLDvG~G~G~--~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------------------~~i~~~~gd~ 118 (244)
+..+|.=||+|+=. ++..++. ..+.. ++..|. ++.++.+++. .++++. .|+
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~-~~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~ 384 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTAT-KAGLP-VRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY 384 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHH-HcCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh
Confidence 45789999998622 3333331 34567 899998 7666654321 355554 233
Q ss_pred CCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhh--------h--
Q 041308 119 FKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVM--------T-- 188 (244)
Q Consensus 119 ~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~--------~-- 188 (244)
+.+..+|+|+=. +...+.- ..++++++-+.++|+..|......++-..-.....+-.+...+... .
T Consensus 385 -~~~~~aDlViEa-v~E~~~~--K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEv 460 (708)
T PRK11154 385 -RGFKHADVVIEA-VFEDLAL--KQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEV 460 (708)
T ss_pred -HHhccCCEEeec-ccccHHH--HHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEE
Confidence 334456877733 4444333 4689999999999987777544433321000000000011111000 0
Q ss_pred hhccCceecCHHHHHHHHHhCCCCeEEEEEccc
Q 041308 189 IYRAKGKHKTEQEFKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 189 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 221 (244)
.........+.+...+++++.|...+.+.+.++
T Consensus 461 v~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG 493 (708)
T PRK11154 461 IPHAKTSAETIATTVALAKKQGKTPIVVRDGAG 493 (708)
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc
Confidence 001112223456677889999998887766553
No 393
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=55.44 E-value=89 Score=23.64 Aligned_cols=84 Identities=19% Similarity=0.133 Sum_probs=49.0
Q ss_pred EcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--CC----cceEEEeccccccCCHHHH
Q 041308 72 VGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--IH----VVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 72 vG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~p----~~D~v~~~~~lh~~~~~~~ 142 (244)
|=||||..+..+++.. .+.+ ++++-. +.-.+. ..+++.+.+|+.++ +. ..|+|+....-. ..+
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~-V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~-~~~--- 74 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHE-VTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP-PKD--- 74 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSE-EEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST-TTH---
T ss_pred EECCCChHHHHHHHHHHHCCCE-EEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhhh-ccc---
Confidence 3456777777766653 2245 777776 554444 58999999999876 22 248887665322 222
Q ss_pred HHHHHHHHHHcCCC--CEEEEec
Q 041308 143 KLIMENYYKALLAG--RKLIACE 163 (244)
Q Consensus 143 ~~~l~~~~~~L~pg--G~lii~d 163 (244)
....+++.++++.- .+++++-
T Consensus 75 ~~~~~~~~~a~~~~~~~~~v~~s 97 (183)
T PF13460_consen 75 VDAAKNIIEAAKKAGVKRVVYLS 97 (183)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEE
T ss_pred ccccccccccccccccccceeee
Confidence 34455555555432 3555543
No 394
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=55.23 E-value=24 Score=31.51 Aligned_cols=83 Identities=24% Similarity=0.225 Sum_probs=49.5
Q ss_pred cceEEEEcCCccHHHHHHHHHcC--CCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC--CC-----cceEEEecccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHC--FICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS--IH-----VVDAIFMKWVL 134 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~--~p-----~~D~v~~~~~l 134 (244)
..+++=+|+ |.++..+++... +.. ++++|. ++.++..++. ..+.++.||..+. +. .+|+|++. .
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~-v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~--~ 305 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYS-VKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL--T 305 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC--C
Confidence 467888887 555555555442 346 899998 7777766543 5788899999765 32 24766643 1
Q ss_pred ccCCHHHHHHHHHHHHHHcCCC
Q 041308 135 TTWTDDECKLIMENYYKALLAG 156 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pg 156 (244)
+ +++.--+...+.+.+.+.
T Consensus 306 ~---~~~~n~~~~~~~~~~~~~ 324 (453)
T PRK09496 306 N---DDEANILSSLLAKRLGAK 324 (453)
T ss_pred C---CcHHHHHHHHHHHHhCCC
Confidence 1 122222334455666554
No 395
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.09 E-value=1.2e+02 Score=24.90 Aligned_cols=77 Identities=12% Similarity=-0.048 Sum_probs=48.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCC-eEEEeec--hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHH
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFIC-EGINFDL--PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDD 140 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~~D~--~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~ 140 (244)
+....||-.||..|...-++++.+..-- ++..... +.|-+.+.+ .++.....|. -+++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-~gl~~~kLDV------------------~~~~ 65 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-FGLKPYKLDV------------------SKPE 65 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-hCCeeEEecc------------------CChH
Confidence 3457899999999999999998875322 1333332 444333322 3455544444 3457
Q ss_pred HHHHHHHHHHHHcCCCCEEEE
Q 041308 141 ECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii 161 (244)
++.++..+++.- |.|.+=+
T Consensus 66 ~V~~v~~evr~~--~~Gkld~ 84 (289)
T KOG1209|consen 66 EVVTVSGEVRAN--PDGKLDL 84 (289)
T ss_pred HHHHHHHHHhhC--CCCceEE
Confidence 778888888764 7777644
No 396
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=55.01 E-value=91 Score=23.64 Aligned_cols=78 Identities=12% Similarity=0.100 Sum_probs=41.5
Q ss_pred CcceEEEEcCCccHH--HHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCC-CCcceEEEeccccccCCHHH
Q 041308 65 GVKRLVDVGGSAGDC--LRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~--~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~ 141 (244)
.+.+||=||||.=.. +..|++.. .+ +++++. ...+...+.+.+.+....+.+. +..+|+|+.. -++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~g--a~-V~VIsp-~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaa-----T~d~e 82 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTG--AF-VTVVSP-EICKEMKELPYITWKQKTFSNDDIKDAHLIYAA-----TNQHA 82 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CE-EEEEcC-ccCHHHHhccCcEEEecccChhcCCCceEEEEC-----CCCHH
Confidence 358999999985433 44455544 34 666652 2222222234566665555443 5556877754 33444
Q ss_pred HHHHHHHHHH
Q 041308 142 CKLIMENYYK 151 (244)
Q Consensus 142 ~~~~l~~~~~ 151 (244)
.-..+....+
T Consensus 83 ~N~~i~~~a~ 92 (157)
T PRK06719 83 VNMMVKQAAH 92 (157)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 397
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=54.64 E-value=68 Score=27.18 Aligned_cols=92 Identities=18% Similarity=0.150 Sum_probs=51.3
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe---CCCCCC----CC-c-ceEEEec
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG---GDMFKS----IH-V-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~---gd~~~~----~p-~-~D~v~~~ 131 (244)
.++..+||-.|+| .|..+..+++.....+ +++++. +...+.+++..--.++. .++.+. .+ . .|+++-.
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~-v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~ 243 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAAR-IIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEA 243 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEc
Confidence 4566888887765 4777777887654225 666665 55554444322111111 111110 12 1 3766632
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
. ... ..+++..+.|+++|+++..-
T Consensus 244 ~-----g~~---~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 244 V-----GFE---ETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred c-----CCH---HHHHHHHHHhhcCCEEEEEc
Confidence 1 111 35788888999999998764
No 398
>PTZ00117 malate dehydrogenase; Provisional
Probab=54.41 E-value=92 Score=26.70 Aligned_cols=95 Identities=13% Similarity=0.199 Sum_probs=51.1
Q ss_pred cceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHH-------hCCCC--CCeeEEe-CCCCCCCCcceEEEeccc
Q 041308 66 VKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVA-------KAPSI--PEVTHIG-GDMFKSIHVVDAIFMKWV 133 (244)
Q Consensus 66 ~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~-------~a~~~--~~i~~~~-gd~~~~~p~~D~v~~~~~ 133 (244)
..+|.=||+|+ |.....++....-.+ ++.+|+ ++..+ .+... ....+.. +|+ +.+..+|+|+...-
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVitag 82 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVITAG 82 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEECCC
Confidence 46899999987 776666555443245 888897 43221 11111 2234433 443 24666799887653
Q ss_pred cccCC---H--------HHHHHHHHHHHHHcCCCCEEEEec
Q 041308 134 LTTWT---D--------DECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 134 lh~~~---~--------~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.-.-+ . +-...+.+++.+. .|.+.++++.
T Consensus 83 ~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvs 122 (319)
T PTZ00117 83 VQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVT 122 (319)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 31111 1 2233445555544 4788777653
No 399
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=54.38 E-value=68 Score=28.78 Aligned_cols=96 Identities=10% Similarity=-0.002 Sum_probs=47.6
Q ss_pred ceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCCC---------------CeeEEeCCCCCCCCcceEEE
Q 041308 67 KRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSIP---------------EVTHIGGDMFKSIHVVDAIF 129 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~~---------------~i~~~~gd~~~~~p~~D~v~ 129 (244)
.+|-=||-| .....++.... +.+ ++++|. +..++..++.. ++.+. .+. +....+|+++
T Consensus 7 mkI~vIGlG--yvGlpmA~~la~~~~-V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t-~~~-~~~~~advvi 81 (425)
T PRK15182 7 VKIAIIGLG--YVGLPLAVEFGKSRQ-VVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFT-SEI-EKIKECNFYI 81 (425)
T ss_pred CeEEEECcC--cchHHHHHHHhcCCE-EEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEE-eCH-HHHcCCCEEE
Confidence 456566555 33333333221 345 999999 77777666321 11111 111 1123358877
Q ss_pred eccccc--c---CCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 130 MKWVLT--T---WTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 130 ~~~~lh--~---~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
++---- . ..-.......+.+.+.|++|..+++..++.+
T Consensus 82 i~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~p 124 (425)
T PRK15182 82 ITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYP 124 (425)
T ss_pred EEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 553221 1 1113344556788889988665544444333
No 400
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=54.33 E-value=14 Score=27.92 Aligned_cols=45 Identities=13% Similarity=-0.152 Sum_probs=31.9
Q ss_pred EEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEe
Q 041308 70 VDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIG 115 (244)
Q Consensus 70 LDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~ 115 (244)
==+.||||.=..-.+.++|+++ +..+--+.....+|+..+.++++
T Consensus 59 GIliCGtGiG~siaANK~~GIr-aa~~~d~~~A~~ar~hNnaNVl~ 103 (144)
T TIGR00689 59 GILICGTGIGMSIAANKFKGIR-AALCVDEYTAALARQHNDANVLC 103 (144)
T ss_pred EEEEcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHhcCCcEEE
Confidence 3455888888888899999999 76665566767777655544443
No 401
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=54.16 E-value=1.4e+02 Score=25.46 Aligned_cols=94 Identities=14% Similarity=-0.013 Sum_probs=51.8
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCC--CC----CCCc--ce-EEEec
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDM--FK----SIHV--VD-AIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~--~~----~~p~--~D-~v~~~ 131 (244)
..+..+||=.|+| .|..+..+++.. +.+.+++++. +.-.+.+++..--.++..+- .+ ..+. .| +|+ .
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~-d 235 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLIL-E 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEE-E
Confidence 4567899888875 555666677665 3441566776 65555554432111111110 00 0111 25 443 2
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
..... ..+....++|+|||+++++-..
T Consensus 236 ----~~G~~---~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 236 ----TAGVP---QTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred ----CCCCH---HHHHHHHHHhhcCCEEEEEccC
Confidence 12212 4678888999999999988643
No 402
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=53.94 E-value=1.3e+02 Score=27.52 Aligned_cols=99 Identities=12% Similarity=0.029 Sum_probs=56.9
Q ss_pred eEEEEcCCccHHHHH--HHHHcCCCCeEEEeec-hHHHHhCCCC---------C---------CeeEEeCCCCCCCCcce
Q 041308 68 RLVDVGGSAGDCLRI--ILQKHCFICEGINFDL-PEVVAKAPSI---------P---------EVTHIGGDMFKSIHVVD 126 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~--l~~~~p~~~~~~~~D~-~~~i~~a~~~---------~---------~i~~~~gd~~~~~p~~D 126 (244)
+|.=+|.|......+ |++..++.+ ++++|. +..++..++. . ++.+ ..|+.+.+..+|
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~-V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~i~~ad 80 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIE-VVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKHVAEAD 80 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCe-EEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHHHhcCC
Confidence 567788886554333 444445667 999998 7777775431 0 1111 122211133468
Q ss_pred EEEeccc--c--------ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 127 AIFMKWV--L--------TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 127 ~v~~~~~--l--------h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
+++++-- . +..+-.....+.+++.+.|++ |.+++.+.+.+..
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~-~~lVv~~STvp~G 132 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS-DKIVVEKSTVPVK 132 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC-CcEEEEeCCCCCC
Confidence 8776521 1 122333567788999999977 5566666665544
No 403
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=53.93 E-value=1.1e+02 Score=24.85 Aligned_cols=90 Identities=11% Similarity=-0.038 Sum_probs=50.9
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCC-CeeEEeCCCCCC-CC--cceEEEecccccc
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIP-EVTHIGGDMFKS-IH--VVDAIFMKWVLTT 136 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~-~i~~~~gd~~~~-~p--~~D~v~~~~~lh~ 136 (244)
..+..++|-.|+|. |..+..+++...--+ +++++. ++..+.+++.. .-.+.. ..+. .+ ..|+++-...
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~-vi~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~d~vl~~~~--- 168 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGARE-VVGVDPDAARRELAEALGPADPVAA--DTADEIGGRGADVVIEASG--- 168 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCc-EEEECCCHHHHHHHHHcCCCccccc--cchhhhcCCCCCEEEEccC---
Confidence 56678898888764 666777777653223 677776 55555544432 000000 0001 11 1377763211
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.. ..+....+.|+++|+++..-
T Consensus 169 --~~---~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 --SP---SALETALRLLRDRGRVVLVG 190 (277)
T ss_pred --Ch---HHHHHHHHHhcCCcEEEEEe
Confidence 11 34677888999999998764
No 404
>PRK11524 putative methyltransferase; Provisional
Probab=53.81 E-value=15 Score=30.85 Aligned_cols=20 Identities=5% Similarity=-0.006 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCCCEEEEe
Q 041308 143 KLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii~ 162 (244)
...++++.++|||||.+++.
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 47899999999999999985
No 405
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=53.76 E-value=62 Score=27.29 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=53.9
Q ss_pred CCCcceEEEEc--CCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC---CCCCC----C-Cc-ceEEEe
Q 041308 63 FKGVKRLVDVG--GSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG---DMFKS----I-HV-VDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g---d~~~~----~-p~-~D~v~~ 130 (244)
.++..+||=.| +|.|..+..+++.. +.+ +++.+. +.-.+.+++..--.++.. +.... . +. .|+++-
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~-Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d 213 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLK-GCK-VVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFD 213 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEE
Confidence 56778999888 46888888888775 556 777775 555555554311111111 11111 1 11 266652
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
....+ .+....+.|+|||+++++-.
T Consensus 214 -----~~G~~----~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 214 -----NVGGE----FSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred -----CCCHH----HHHHHHHHhCcCcEEEEecc
Confidence 22222 35778889999999998753
No 406
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=53.58 E-value=25 Score=29.45 Aligned_cols=97 Identities=18% Similarity=0.114 Sum_probs=59.7
Q ss_pred HhccCCCCCCcceEEEEc--CCccHHHHHHHHHcCCCCeEEEee-chHHHHhCCCC---CCeeEEeCCCCCC---C--Cc
Q 041308 56 VLDGYDGFKGVKRLVDVG--GSAGDCLRIILQKHCFICEGINFD-LPEVVAKAPSI---PEVTHIGGDMFKS---I--HV 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~~D-~~~~i~~a~~~---~~i~~~~gd~~~~---~--p~ 124 (244)
+.+.++ .+++.+||-.. +|.|..+..+++..- .+ .++.- -.+=.+.++++ .-|....-|+.+. + +.
T Consensus 138 l~e~y~-vkpGhtVlvhaAAGGVGlll~Ql~ra~~-a~-tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngK 214 (336)
T KOG1197|consen 138 LFEAYN-VKPGHTVLVHAAAGGVGLLLCQLLRAVG-AH-TIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGK 214 (336)
T ss_pred HHHhcC-CCCCCEEEEEeccccHHHHHHHHHHhcC-cE-EEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCC
Confidence 456676 88888887664 688999999998754 33 33332 24444555554 2355555555443 2 22
Q ss_pred c-eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 V-DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 ~-D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ |+++=+-- ..-++.-..+|||+|+++-.-.
T Consensus 215 GVd~vyDsvG---------~dt~~~sl~~Lk~~G~mVSfG~ 246 (336)
T KOG1197|consen 215 GVDAVYDSVG---------KDTFAKSLAALKPMGKMVSFGN 246 (336)
T ss_pred Cceeeecccc---------chhhHHHHHHhccCceEEEecc
Confidence 4 77663321 1235667789999999997643
No 407
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=53.50 E-value=20 Score=26.72 Aligned_cols=32 Identities=22% Similarity=0.138 Sum_probs=19.2
Q ss_pred EEcCCcc--HHHHHHH--HHcCCCCeEEEeec-hHHHH
Q 041308 71 DVGGSAG--DCLRIIL--QKHCFICEGINFDL-PEVVA 103 (244)
Q Consensus 71 DvG~G~G--~~~~~l~--~~~p~~~~~~~~D~-~~~i~ 103 (244)
|||+..| .....+. ...+..+ ++.++. |...+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~-v~~~Ep~p~~~~ 37 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGR-VHAFEPNPSNFE 37 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SE-EEEE---HHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCE-EEEEECCHHHHH
Confidence 8999999 5555554 3567777 899998 76644
No 408
>PRK08618 ornithine cyclodeaminase; Validated
Probab=53.37 E-value=51 Score=28.28 Aligned_cols=96 Identities=15% Similarity=0.008 Sum_probs=52.9
Q ss_pred CCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----CCCeeEEe-CCCCCCCCcceEEEecccccc
Q 041308 64 KGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----IPEVTHIG-GDMFKSIHVVDAIFMKWVLTT 136 (244)
Q Consensus 64 ~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~~~i~~~~-gd~~~~~p~~D~v~~~~~lh~ 136 (244)
++..+++=|||| .|......+....+++++.++|. ++..+...+ ...+++.. .|..+-...+|+|++.-.-.|
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC
Confidence 346789999998 45444333333345554788887 444332221 11233332 222222445699887654332
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
.++. +.|+||-.+..+....+..
T Consensus 205 -------p~i~---~~l~~G~hV~~iGs~~p~~ 227 (325)
T PRK08618 205 -------PVFS---EKLKKGVHINAVGSFMPDM 227 (325)
T ss_pred -------cchH---HhcCCCcEEEecCCCCccc
Confidence 2333 6789988888776655544
No 409
>PRK10458 DNA cytosine methylase; Provisional
Probab=53.33 E-value=78 Score=28.89 Aligned_cols=38 Identities=13% Similarity=-0.048 Sum_probs=26.8
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhC
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKA 105 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a 105 (244)
.-+++|+=||.|.+...+.+.. .+-+..+|. +...+.-
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG--~~~v~a~Eid~~A~~TY 126 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG--GQCVFTSEWNKHAVRTY 126 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC--CEEEEEEechHHHHHHH
Confidence 3599999999999999998764 331355676 5544433
No 410
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=53.28 E-value=39 Score=27.98 Aligned_cols=93 Identities=14% Similarity=0.041 Sum_probs=53.0
Q ss_pred CCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe-CCCCCC----CC-c-ceEEEecccc
Q 041308 64 KGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG-GDMFKS----IH-V-VDAIFMKWVL 134 (244)
Q Consensus 64 ~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~-gd~~~~----~p-~-~D~v~~~~~l 134 (244)
.+..+||=+|+| .|..+..+++.. +.++++++|. +.-.+.+++..--.++. .+..+. .+ . .|+++-.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~--- 194 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEF--- 194 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEEC---
Confidence 356789888875 566667777665 3332677786 66666665432111111 111000 11 1 3766532
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
...+ ..++.+.+.|+|+|+++++-..
T Consensus 195 --~G~~---~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 195 --SGAT---AAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred --CCCh---HHHHHHHHHhcCCCEEEEeccC
Confidence 2122 4577888999999999987754
No 411
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=52.92 E-value=60 Score=26.76 Aligned_cols=40 Identities=8% Similarity=-0.082 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCeEEEEEccceeEE--EeecCchhHHHHH
Q 041308 199 EQEFKQLGFSTGFPHLRAFISIIFTLF--LSSKSNFSFWILE 238 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 238 (244)
.+...+.|++.|+....+..+..|.++ +.++-|.+.+.+.
T Consensus 200 ~~~~~~~L~~~G~~~~~l~ri~~PiGL~~iGa~tP~EIAlSI 241 (246)
T TIGR02964 200 RARFEHRLRARGVDPAQIARMTCPIGLPGVKGKAPAVIAVSV 241 (246)
T ss_pred HHHHHHHHHhcCCCHHHHhhEeCCCCCCccCCCCHHHHHHHH
Confidence 455667778889887777777788888 5677787777554
No 412
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=52.27 E-value=57 Score=27.65 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=44.3
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCC---eEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFIC---EGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~---~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~ 141 (244)
+...|+-+|++.|.-...|.+.+|+.+ +.+.+|........+..++|+++.. + ++++
T Consensus 58 ~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~~-f------------------ftee- 117 (294)
T PF01358_consen 58 GPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQR-F------------------FTEE- 117 (294)
T ss_dssp T-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEES----------------------HH-
T ss_pred CceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeehh-h------------------CCHH-
Confidence 347899999999999999998888643 2788898444444455566776552 2 3343
Q ss_pred HHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 142 CKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
.++++++.+.+ ..++|.|.-..
T Consensus 118 ---~~~~~~~~~~~-~illISDIRS~ 139 (294)
T PF01358_consen 118 ---YARRLRDKLNL-KILLISDIRSG 139 (294)
T ss_dssp ---HHHHHHHHHTT-EEEEEE-----
T ss_pred ---HHHHHHhhcCC-CeEEEEecccC
Confidence 34556666666 66666666433
No 413
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=52.10 E-value=16 Score=27.71 Aligned_cols=43 Identities=12% Similarity=-0.116 Sum_probs=31.2
Q ss_pred EcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEe
Q 041308 72 VGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIG 115 (244)
Q Consensus 72 vG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~ 115 (244)
+-||||.=..-.+.++|+++ +..+--+.....+|+..+.++++
T Consensus 64 liCGtGiG~siaANK~~GIR-AA~~~d~~~A~~ar~hNnaNVL~ 106 (148)
T PRK05571 64 LICGTGIGMSIAANKVKGIR-AALCHDTYSAHLAREHNNANVLA 106 (148)
T ss_pred EEcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHhcCCcEEE
Confidence 44788877778889999999 76666577777777765555544
No 414
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=51.91 E-value=36 Score=29.49 Aligned_cols=87 Identities=13% Similarity=-0.005 Sum_probs=48.0
Q ss_pred cceEEEEcCCccH--HHHHHHHHcCCCCeEEEeec--hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHH
Q 041308 66 VKRLVDVGGSAGD--CLRIILQKHCFICEGINFDL--PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 66 ~~~vLDvG~G~G~--~~~~l~~~~p~~~~~~~~D~--~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~ 141 (244)
..+|-=||+|.=. .+..|.+ .+.+ +++.+. +...+.+++ ..+. ..|..+-...+|+|++. +++..
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~--sG~~-Vvv~~r~~~~s~~~A~~-~G~~--~~s~~eaa~~ADVVvLa-----VPd~~ 85 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRD--SGVD-VVVGLREGSKSWKKAEA-DGFE--VLTVAEAAKWADVIMIL-----LPDEV 85 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHH--CCCE-EEEEECCchhhHHHHHH-CCCe--eCCHHHHHhcCCEEEEc-----CCHHH
Confidence 3678888887522 3333433 3445 665554 223333332 2222 22321113446988865 55555
Q ss_pred HHHHH-HHHHHHcCCCCEEEEec
Q 041308 142 CKLIM-ENYYKALLAGRKLIACE 163 (244)
Q Consensus 142 ~~~~l-~~~~~~L~pgG~lii~d 163 (244)
...++ +++...|+||..|++..
T Consensus 86 ~~~V~~~~I~~~Lk~g~iL~~a~ 108 (330)
T PRK05479 86 QAEVYEEEIEPNLKEGAALAFAH 108 (330)
T ss_pred HHHHHHHHHHhcCCCCCEEEECC
Confidence 56777 77888999988886543
No 415
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=51.89 E-value=50 Score=26.33 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=38.6
Q ss_pred cceEEEEcCCccHH--HHHHHHHcCCCCeEEEeec---hHHHHhCCCCCCeeEEeCCCCCC-CCcceEEEec
Q 041308 66 VKRLVDVGGSAGDC--LRIILQKHCFICEGINFDL---PEVVAKAPSIPEVTHIGGDMFKS-IHVVDAIFMK 131 (244)
Q Consensus 66 ~~~vLDvG~G~G~~--~~~l~~~~p~~~~~~~~D~---~~~i~~a~~~~~i~~~~gd~~~~-~p~~D~v~~~ 131 (244)
+.++|=||+|.=.. +..|++.. .+ +++++. +...+.+. ..++.++.+++... +..+|+|+..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g--a~-VtVvsp~~~~~l~~l~~-~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG--AQ-LRVIAEELESELTLLAE-QGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--CE-EEEEcCCCCHHHHHHHH-cCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 36999999985443 34455544 45 666664 33333333 35899999887643 5556887755
No 416
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=51.84 E-value=67 Score=26.82 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=45.7
Q ss_pred eEEEEcCCc--cHHHHHHHHHc--CCCCeEEEeec-h-HHHHhCCC-CCCeeEEeCCCCCCCCcceEEEeccccccCCHH
Q 041308 68 RLVDVGGSA--GDCLRIILQKH--CFICEGINFDL-P-EVVAKAPS-IPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDD 140 (244)
Q Consensus 68 ~vLDvG~G~--G~~~~~l~~~~--p~~~~~~~~D~-~-~~i~~a~~-~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~ 140 (244)
+|.=||||. +.++..+.+.. +..+ +++++. + ...+.... ...+.. ..|..+....+|+|++. .++.
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~-V~~~~r~~~~~~~~l~~~~~~~~~-~~~~~e~~~~aDvVila-----vpp~ 75 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEE-IILYSSSKNEHFNQLYDKYPTVEL-ADNEAEIFTKCDHSFIC-----VPPL 75 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCccc-EEEEeCCcHHHHHHHHHHcCCeEE-eCCHHHHHhhCCEEEEe-----cCHH
Confidence 466678773 33555555543 1234 677775 3 22222111 122221 22221112335888755 4556
Q ss_pred HHHHHHHHHHHHcCCCCEEEEe
Q 041308 141 ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~ 162 (244)
....+++++...++++..++.+
T Consensus 76 ~~~~vl~~l~~~l~~~~~ivS~ 97 (277)
T PRK06928 76 AVLPLLKDCAPVLTPDRHVVSI 97 (277)
T ss_pred HHHHHHHHHHhhcCCCCEEEEE
Confidence 6778888888888777655543
No 417
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=51.58 E-value=12 Score=28.05 Aligned_cols=44 Identities=14% Similarity=-0.093 Sum_probs=27.3
Q ss_pred EEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEE
Q 041308 70 VDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHI 114 (244)
Q Consensus 70 LDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~ 114 (244)
-=+.||||.=..-.+.++|+++ +..+--+.....+|+..+.+++
T Consensus 60 GIliCgtGiG~~iaANK~~GIr-Aa~~~d~~~A~~ar~hNdaNVL 103 (140)
T PF02502_consen 60 GILICGTGIGMSIAANKVPGIR-AALCSDPYSAKMAREHNDANVL 103 (140)
T ss_dssp EEEEESSSHHHHHHHHTSTT---EEE-SSHHHHHHHHHTT--SEE
T ss_pred EEEEcCCChhhhhHhhcCCCEE-EEeeCCHHHHHHHHHhcCCcEE
Confidence 4456788877888899999999 7666556666667765444443
No 418
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=51.50 E-value=11 Score=29.83 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCCCEEEEe
Q 041308 142 CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii~ 162 (244)
....+++++|+|||||.+++.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 467899999999999998874
No 419
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=51.38 E-value=11 Score=32.16 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 140 DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
++...+|..+..+|+|||+++++..
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISF 242 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISF 242 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 3456789999999999999999876
No 420
>PLN02827 Alcohol dehydrogenase-like
Probab=51.18 E-value=83 Score=27.45 Aligned_cols=93 Identities=16% Similarity=0.029 Sum_probs=52.5
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC-----CCCCC----CCc-ceEEEe
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG-----DMFKS----IHV-VDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g-----d~~~~----~p~-~D~v~~ 130 (244)
..+..+||-+|+| .|..+..+++..---. ++++|. +.-.+.+++..--.++.. +..+. .+. .|+|+-
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~-vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQ-IIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence 5667899988864 5666667776653224 777785 666666654321111111 11000 111 366653
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecc
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAG-RKLIACEP 164 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~ 164 (244)
. .... ..+....+.+++| |+++++-.
T Consensus 270 ~-----~G~~---~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 270 C-----VGDT---GIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred C-----CCCh---HHHHHHHHhhccCCCEEEEECC
Confidence 2 2222 3467788889998 99988654
No 421
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=50.58 E-value=1.8e+02 Score=25.78 Aligned_cols=92 Identities=14% Similarity=0.006 Sum_probs=47.5
Q ss_pred eEEEEcCCccH--HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------------------CCeeEEeCCCCCCCCcc
Q 041308 68 RLVDVGGSAGD--CLRIILQKHCFICEGINFDL-PEVVAKAPSI-------------------PEVTHIGGDMFKSIHVV 125 (244)
Q Consensus 68 ~vLDvG~G~G~--~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------------------~~i~~~~gd~~~~~p~~ 125 (244)
+|-=||+|.=. .+..+++. +.+ ++++|. +..++..++. .++.+. .|..+-...+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~--G~~-V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~~~~~a 77 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL--GHE-VTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYEDAIRDA 77 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc--CCe-EEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHHHHhhC
Confidence 35557777322 33444443 345 899998 7666554431 112221 1211113335
Q ss_pred eEEEecccccc-----CCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 126 DAIFMKWVLTT-----WTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 126 D~v~~~~~lh~-----~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
|+|+++---.. .+.......++.+.+.+++|-.++...
T Consensus 78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 88776533211 112345667788888888876555543
No 422
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=50.47 E-value=1.6e+02 Score=25.23 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=54.4
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe-CC-----CCCCC----Cc--ce--
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG-GD-----MFKSI----HV--VD-- 126 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~-gd-----~~~~~----p~--~D-- 126 (244)
.++..+||=.|+|. |..+..+++.. +.+ ++++|. +..++.+++..--.++. .+ +.+.+ +. .|
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~-vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM-GAA-VVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCe-EEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 56678999999864 77777788775 457 888887 77776665432111111 11 10000 10 13
Q ss_pred --EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 127 --AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 127 --~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+|+ . ..... ..++.+.+.|++||+++++-..
T Consensus 242 ~d~v~-d----~~g~~---~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 242 GWKIF-E----CSGSK---PGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred cCEEE-E----CCCCh---HHHHHHHHHHhcCCeEEEECcC
Confidence 333 1 11112 3566778899999999988654
No 423
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=50.03 E-value=1.3e+02 Score=25.08 Aligned_cols=85 Identities=11% Similarity=0.093 Sum_probs=49.4
Q ss_pred cceEEEEcCCccH--HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------------------CCeeEEeCCCC
Q 041308 66 VKRLVDVGGSAGD--CLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------------------PEVTHIGGDMF 119 (244)
Q Consensus 66 ~~~vLDvG~G~G~--~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------------------~~i~~~~gd~~ 119 (244)
..+|.=||+|+=. .+..+++. +.+ +++.|. ++.++.+.+. .++++ ..|+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~- 78 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA--GYD-VLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDL- 78 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC--CCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCH-
Confidence 3577888888433 34444443 446 888898 7666543210 12333 2233
Q ss_pred CCCCcceEEEeccccccCCH--HHHHHHHHHHHHHcCCCCEEE
Q 041308 120 KSIHVVDAIFMKWVLTTWTD--DECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 120 ~~~p~~D~v~~~~~lh~~~~--~~~~~~l~~~~~~L~pgG~li 160 (244)
+.+..+|+|+.. +++ +....+++++...++|+..++
T Consensus 79 ~~~~~aD~Viea-----vpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 79 EDLADCDLVIEA-----ATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred HHhcCCCEEEEc-----CcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 334446888865 222 224577889999999977655
No 424
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=49.95 E-value=4.2 Score=36.80 Aligned_cols=94 Identities=13% Similarity=-0.026 Sum_probs=65.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CC---c-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IH---V-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p---~-~D~v~ 129 (244)
+..+|||-=|++|.-++..++..|++.++++.|+ +..++..+.+ +.++...+|+... -+ . +|+|-
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 4579999999999999999999999877899999 8888766653 2334444444211 11 1 25544
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+--. -....+|.-+.++++.||.+++.-+
T Consensus 189 LDPy------Gs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 189 LDPY------GSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred cCCC------CCccHHHHHHHHHhhcCCEEEEEec
Confidence 3321 1124688899999999999998654
No 425
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=49.50 E-value=20 Score=30.90 Aligned_cols=39 Identities=15% Similarity=0.021 Sum_probs=26.7
Q ss_pred ceEEEEcCC-ccHHHHH-HHHHcCCCCeEEEeec-hHHHHhCC
Q 041308 67 KRLVDVGGS-AGDCLRI-ILQKHCFICEGINFDL-PEVVAKAP 106 (244)
Q Consensus 67 ~~vLDvG~G-~G~~~~~-l~~~~p~~~~~~~~D~-~~~i~~a~ 106 (244)
.+|..||.| .|..+.+ ++-..|+++ ++++|. ..-+..-.
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~-vtvvd~s~~ri~~wn 43 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIE-VTVVDISVPRINAWN 43 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceE-EEEEecCchHhhccc
Confidence 367888988 3444444 555789999 999998 55554443
No 426
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=49.46 E-value=31 Score=25.24 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=23.1
Q ss_pred ceecCHHHHHHHHHhCCCCeEEEEEccc
Q 041308 194 GKHKTEQEFKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 194 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 221 (244)
+..++.+++..++++|||++.+.-.-..
T Consensus 93 S~Ky~~~~~~~l~~~aGl~~~~~w~d~~ 120 (127)
T PF10017_consen 93 SYKYSPEEFEALAEQAGLEVEKRWTDPK 120 (127)
T ss_pred eeCcCHHHHHHHHHHCCCeeEEEEECCC
Confidence 4557999999999999999988755543
No 427
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=49.38 E-value=19 Score=27.34 Aligned_cols=47 Identities=15% Similarity=-0.068 Sum_probs=31.5
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEe
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIG 115 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~ 115 (244)
..-=+.||||.=..-.+.++|+++ +-.+--+.....+|+..+.++++
T Consensus 60 d~GIliCGTGiG~~iaANKv~Gir-aAl~~D~~sA~~ar~hNnaNvl~ 106 (151)
T COG0698 60 DLGILICGTGIGMSIAANKVPGIR-AALVSDPTSAKLAREHNNANVLC 106 (151)
T ss_pred CeeEEEecCChhHHHHhhccCCeE-EEEecCHHHHHHHHhcCCCcEEE
Confidence 334456888887888889999998 65554466666677654444443
No 428
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=49.20 E-value=15 Score=29.77 Aligned_cols=53 Identities=26% Similarity=0.227 Sum_probs=42.1
Q ss_pred cccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHH
Q 041308 47 RVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEV 101 (244)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~ 101 (244)
.+..-+.+++++.+. --+...++|.-=|.|.-+..+++++|+++ ..++|. |-.
T Consensus 26 ~HVPVm~devl~~ls-pv~g~sf~DmTfGagGHt~~ilqk~se~k-~yalDrDP~A 79 (303)
T KOG2782|consen 26 SHVPVMLDEVLDILS-PVRGRSFVDMTFGAGGHTSSILQKHSELK-NYALDRDPVA 79 (303)
T ss_pred cCCceehhhHHHHcC-CCCCceEEEEeccCCcchHHHHHhCcHhh-hhhhccChHH
Confidence 334445677888776 44568999999999999999999999999 888997 533
No 429
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=48.60 E-value=1.5e+02 Score=24.82 Aligned_cols=88 Identities=10% Similarity=0.013 Sum_probs=46.1
Q ss_pred eEEEEcCCcc-H-HHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeC--C------CCCC----CCcceEEEeccc
Q 041308 68 RLVDVGGSAG-D-CLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGG--D------MFKS----IHVVDAIFMKWV 133 (244)
Q Consensus 68 ~vLDvG~G~G-~-~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~g--d------~~~~----~p~~D~v~~~~~ 133 (244)
+|+=+|+|.- . ++..|.+.. .+ ++.++.+..++..++. .+.+... + ...+ ....|+|++.--
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g--~~-V~~~~r~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG--RD-VTFLVRPKRAKALRER-GLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC--Cc-eEEEecHHHHHHHHhC-CeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence 5677888743 3 444455443 35 7777774444443332 1221111 1 1111 123587776533
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
- .+...+++++...++++..++....
T Consensus 78 ~-----~~~~~~~~~l~~~~~~~~~ii~~~n 103 (305)
T PRK12921 78 A-----YQLDAAIPDLKPLVGEDTVIIPLQN 103 (305)
T ss_pred c-----cCHHHHHHHHHhhcCCCCEEEEeeC
Confidence 2 2345677888888888777765543
No 430
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=48.37 E-value=67 Score=31.14 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=58.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------------------CCeeEEeCCCCC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------------------PEVTHIGGDMFK 120 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------------------~~i~~~~gd~~~ 120 (244)
+..+|-=||+|+=.-.++.+-...+.. ++..|. ++.++.+.+. .++++. .|+ +
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 410 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLK-TVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY-S 410 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCc-EEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH-H
Confidence 457899999985333333222234677 999998 7776654321 345543 233 2
Q ss_pred CCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 121 ~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
.+..+|+|+ ..+...+.- ..++++++-+.++|+..|......+
T Consensus 411 ~~~~aDlVi-EAv~E~l~~--K~~vf~~l~~~~~~~~ilasNTSsl 453 (737)
T TIGR02441 411 GFKNADMVI-EAVFEDLSL--KHKVIKEVEAVVPPHCIIASNTSAL 453 (737)
T ss_pred HhccCCeeh-hhccccHHH--HHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 344468766 335544333 4689999999999988777654433
No 431
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=48.19 E-value=1.4e+02 Score=23.72 Aligned_cols=62 Identities=16% Similarity=0.063 Sum_probs=35.2
Q ss_pred cceEEEEcCCcc-HH-HHHHHHHcCCCCeEEEeec---hHHHHhCCCCCCeeEEeCCCCCC-CCcceEEEec
Q 041308 66 VKRLVDVGGSAG-DC-LRIILQKHCFICEGINFDL---PEVVAKAPSIPEVTHIGGDMFKS-IHVVDAIFMK 131 (244)
Q Consensus 66 ~~~vLDvG~G~G-~~-~~~l~~~~p~~~~~~~~D~---~~~i~~a~~~~~i~~~~gd~~~~-~p~~D~v~~~ 131 (244)
+.++|=||+|.= .. +..|.+.. .+ +++++. +.+.+.+.. ..+.+....+.+. +..+|+|+..
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~g--a~-V~VIs~~~~~~l~~l~~~-~~i~~~~~~~~~~~l~~adlViaa 77 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG--AH-IVVISPELTENLVKLVEE-GKIRWKQKEFEPSDIVDAFLVIAA 77 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--Ce-EEEEcCCCCHHHHHHHhC-CCEEEEecCCChhhcCCceEEEEc
Confidence 479999999743 32 34455544 34 666653 333333332 5677766555443 5567887765
No 432
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=48.01 E-value=1.7e+02 Score=24.59 Aligned_cols=93 Identities=11% Similarity=0.024 Sum_probs=51.5
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC-----CCC-c-ceEEEeccc
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK-----SIH-V-VDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~-----~~p-~-~D~v~~~~~ 133 (244)
+.+..+||-+|+| .|..+..+++... .+.+++++. +...+.+++..--.++..+-.+ ..+ . .|+++-+
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~-- 233 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEA-- 233 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEEC--
Confidence 5667899999865 3666677777653 331555665 5555555432111222211100 011 1 3777633
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
... ...+.++.+.|+++|+++.+..
T Consensus 234 ---~~~---~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 234 ---TGV---PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred ---CCC---hHHHHHHHHHHhcCCEEEEEec
Confidence 111 1456778889999999988754
No 433
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=47.98 E-value=60 Score=28.41 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=34.4
Q ss_pred EEEEcCC-ccHHHHHHHHHcCCC-CeEEEeec-hHHH-HhCC--CCCCeeEEeCCCCCC--CC----cceEEEec
Q 041308 69 LVDVGGS-AGDCLRIILQKHCFI-CEGINFDL-PEVV-AKAP--SIPEVTHIGGDMFKS--IH----VVDAIFMK 131 (244)
Q Consensus 69 vLDvG~G-~G~~~~~l~~~~p~~-~~~~~~D~-~~~i-~~a~--~~~~i~~~~gd~~~~--~p----~~D~v~~~ 131 (244)
|+=+||| +|..+...+.+.+.. + +++.|. ..-. +.++ ...++.....|..+. +. ..|+|+..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~-v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEE-VTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-E-EEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCc-EEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 4567774 555555544445544 6 888887 4443 3333 347999999998764 32 24888854
No 434
>PRK10637 cysG siroheme synthase; Provisional
Probab=47.37 E-value=78 Score=28.68 Aligned_cols=86 Identities=19% Similarity=0.153 Sum_probs=49.5
Q ss_pred cceEEEEcCCccHH--HHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCcceEEEeccccccCCHHH
Q 041308 66 VKRLVDVGGSAGDC--LRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 66 ~~~vLDvG~G~G~~--~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~ 141 (244)
+.+||=||||.=.. +..|++...+++ ++.-+. +++.+.+ +..+++++..++... +..+++|+.. .+|++
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~ga~v~-visp~~~~~~~~l~-~~~~i~~~~~~~~~~dl~~~~lv~~a-----t~d~~ 84 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAGARLT-VNALAFIPQFTAWA-DAGMLTLVEGPFDESLLDTCWLAIAA-----TDDDA 84 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCCCCHHHHHHH-hCCCEEEEeCCCChHHhCCCEEEEEC-----CCCHH
Confidence 48999999997654 344555444444 443355 5554433 347899988887544 5556776644 33332
Q ss_pred HHHHHHHHHHHcCCCCEEEE
Q 041308 142 CKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii 161 (244)
+=+++++..+..|.++.
T Consensus 85 ---~n~~i~~~a~~~~~lvN 101 (457)
T PRK10637 85 ---VNQRVSEAAEARRIFCN 101 (457)
T ss_pred ---HhHHHHHHHHHcCcEEE
Confidence 23444444445566554
No 435
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=47.36 E-value=34 Score=22.78 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=19.9
Q ss_pred CCCcceEEEEcCCccH-HHHHHHHHc-CCCCeEEEee
Q 041308 63 FKGVKRLVDVGGSAGD-CLRIILQKH-CFICEGINFD 97 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~-~~~~l~~~~-p~~~~~~~~D 97 (244)
.+++.+||-+||.+|. ++..++..+ .+.. -+++.
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~-TiGV~ 71 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGAD-TIGVS 71 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--E-EEEEE
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCC-EEEEe
Confidence 5677999999999997 555566554 3444 44443
No 436
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=46.81 E-value=8.6 Score=26.57 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=13.3
Q ss_pred EEEcCCccHHHHHHHHH
Q 041308 70 VDVGGSAGDCLRIILQK 86 (244)
Q Consensus 70 LDvG~G~G~~~~~l~~~ 86 (244)
+|||||.|....+..+.
T Consensus 7 IDIGcG~GNTmda~fRs 23 (124)
T PF07101_consen 7 IDIGCGAGNTMDAAFRS 23 (124)
T ss_pred cccccCCCcchhhhhhc
Confidence 79999999876665544
No 437
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=46.58 E-value=85 Score=25.77 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=43.0
Q ss_pred eEEEEcCCc--cHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHH
Q 041308 68 RLVDVGGSA--GDCLRIILQKHC-FICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 68 ~vLDvG~G~--G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~ 143 (244)
+|.=||||. +.++..+.+... ..+ ++++|. ++..+..++.-.+.. ..+..+....+|+|++. .++....
T Consensus 4 ~I~iIG~G~mG~~la~~l~~~g~~~~~-v~v~~r~~~~~~~~~~~~g~~~-~~~~~~~~~~advVil~-----v~~~~~~ 76 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLLASGVPAKD-IIVSDPSPEKRAALAEEYGVRA-ATDNQEAAQEADVVVLA-----VKPQVME 76 (267)
T ss_pred EEEEEechHHHHHHHHHHHhCCCCcce-EEEEcCCHHHHHHHHHhcCCee-cCChHHHHhcCCEEEEE-----cCHHHHH
Confidence 466788874 345555555431 135 778887 555544433212322 12221113346988864 4666677
Q ss_pred HHHHHHHHHc
Q 041308 144 LIMENYYKAL 153 (244)
Q Consensus 144 ~~l~~~~~~L 153 (244)
.+++++...+
T Consensus 77 ~v~~~l~~~~ 86 (267)
T PRK11880 77 EVLSELKGQL 86 (267)
T ss_pred HHHHHHHhhc
Confidence 7788777655
No 438
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=46.54 E-value=22 Score=27.64 Aligned_cols=45 Identities=13% Similarity=-0.141 Sum_probs=31.9
Q ss_pred EEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEe
Q 041308 70 VDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIG 115 (244)
Q Consensus 70 LDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~ 115 (244)
==+.||||.=..-.+.++|+++ +..+--+.....+++..+.++++
T Consensus 61 GIliCGTGiG~siaANK~~GIR-AA~~~d~~~A~~ar~hNnaNVL~ 105 (171)
T PRK12615 61 GVCICGTGVGINNAVNKVPGIR-SALVRDMTTALYAKEELNANVIG 105 (171)
T ss_pred EEEEcCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHhcCCcEEE
Confidence 3455888887778889999999 76665566667777765555544
No 439
>PRK10537 voltage-gated potassium channel; Provisional
Probab=46.40 E-value=73 Score=28.31 Aligned_cols=87 Identities=14% Similarity=-0.031 Sum_probs=47.9
Q ss_pred cceEEEEcCCccHHHHHHHHHc--CCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCC--CC-----cceEEEecccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKH--CFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS--IH-----VVDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~--~p-----~~D~v~~~~~lh~ 136 (244)
..+++=+|.| ..+..+++.. .+.. ++++|... .+... .+++.++.||..++ +. .++.++...
T Consensus 240 k~HvII~G~g--~lg~~v~~~L~~~g~~-vvVId~d~-~~~~~-~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t---- 310 (393)
T PRK10537 240 KDHFIICGHS--PLAINTYLGLRQRGQA-VTVIVPLG-LEHRL-PDDADLIPGDSSDSAVLKKAGAARARAILALR---- 310 (393)
T ss_pred CCeEEEECCC--hHHHHHHHHHHHCCCC-EEEEECch-hhhhc-cCCCcEEEeCCCCHHHHHhcCcccCCEEEEcC----
Confidence 3577777665 4444444432 2345 77777532 22222 25678899999764 32 246555421
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
-+|++.. ..-...|.++|..+++..
T Consensus 311 ~dD~~Nl-~ivL~ar~l~p~~kIIa~ 335 (393)
T PRK10537 311 DNDADNA-FVVLAAKEMSSDVKTVAA 335 (393)
T ss_pred CChHHHH-HHHHHHHHhCCCCcEEEE
Confidence 1233333 344456778898887763
No 440
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=46.18 E-value=7.6 Score=30.15 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=43.8
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHH
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~ 143 (244)
+.+|.=+|+| .|.-....++.+ +.+ +++.|. +...+.... ..+ ...++.+-++.+|+|++..-+..-+. .
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~f-G~~-V~~~d~~~~~~~~~~~-~~~--~~~~l~ell~~aDiv~~~~plt~~T~---~ 107 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAF-GMR-VIGYDRSPKPEEGADE-FGV--EYVSLDELLAQADIVSLHLPLTPETR---G 107 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHT-T-E-EEEEESSCHHHHHHHH-TTE--EESSHHHHHHH-SEEEE-SSSSTTTT---T
T ss_pred CCEEEEEEEcCCcCeEeeeeecC-Cce-eEEecccCChhhhccc-ccc--eeeehhhhcchhhhhhhhhccccccc---e
Confidence 5899999875 444444444433 567 999998 443321111 122 22233222445688887665521111 0
Q ss_pred HHHHHHHHHcCCCCEEEE
Q 041308 144 LIMENYYKALLAGRKLIA 161 (244)
Q Consensus 144 ~~l~~~~~~L~pgG~lii 161 (244)
-+=++..+.||||..|+-
T Consensus 108 li~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 108 LINAEFLAKMKPGAVLVN 125 (178)
T ss_dssp SBSHHHHHTSTTTEEEEE
T ss_pred eeeeeeeeccccceEEEe
Confidence 111345567888776665
No 441
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=46.14 E-value=75 Score=20.09 Aligned_cols=59 Identities=14% Similarity=-0.027 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 140 DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
+...-.+++..+.|++|..+.+.-. +. .+.+++..|+++.|++++.+...
T Consensus 11 P~Pll~~~~~l~~l~~G~~l~v~~d---~~---------------------------~~~~di~~~~~~~g~~~~~~~~~ 60 (70)
T PF01206_consen 11 PMPLLKAKKALKELPPGEVLEVLVD---DP---------------------------AAVEDIPRWCEENGYEVVEVEEE 60 (70)
T ss_dssp THHHHHHHHHHHTSGTT-EEEEEES---ST---------------------------THHHHHHHHHHHHTEEEEEEEES
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEEC---Cc---------------------------cHHHHHHHHHHHCCCEEEEEEEe
Confidence 3344556777788888877755321 11 12567899999999999999886
Q ss_pred cceeEEEee
Q 041308 220 IIFTLFLSS 228 (244)
Q Consensus 220 ~~~~~~~~~ 228 (244)
.+.+.+.+.
T Consensus 61 ~~~~~i~I~ 69 (70)
T PF01206_consen 61 GGEYRILIR 69 (70)
T ss_dssp SSSEEEEEE
T ss_pred CCEEEEEEE
Confidence 666655543
No 442
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=46.08 E-value=1e+02 Score=25.66 Aligned_cols=89 Identities=8% Similarity=-0.016 Sum_probs=47.6
Q ss_pred eEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCC------CCC---CCcceEEEeccccc
Q 041308 68 RLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDM------FKS---IHVVDAIFMKWVLT 135 (244)
Q Consensus 68 ~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~------~~~---~p~~D~v~~~~~lh 135 (244)
+|+=+|+|. |. ++..|.+.. .+ ++.++. +..++..++. .+.+..++. ... ....|+|++.---
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g--~~-V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~- 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG--HD-VTLVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPAELGPQDLVILAVKA- 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC--Ce-EEEEECChHHHHHHHHc-CCcccCCceeecccCCCChhHcCCCCEEEEeccc-
Confidence 567788763 33 444455433 35 888887 5555444332 121101111 111 2235887765332
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.+...+++.+...+.++..+++....
T Consensus 77 ----~~~~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 77 ----YQLPAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred ----ccHHHHHHHHhhhcCCCCEEEEecCC
Confidence 23456788888888887777765543
No 443
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=45.93 E-value=67 Score=27.12 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=41.5
Q ss_pred EEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCc---ceEEEeccccccCCHH-H
Q 041308 69 LVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHV---VDAIFMKWVLTTWTDD-E 141 (244)
Q Consensus 69 vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~---~D~v~~~~~lh~~~~~-~ 141 (244)
|-=||+|. ...+..+.+. +.+ +++.|. +...+..++. .+.. ..+..+-... .|+|++. .+++ .
T Consensus 3 Ig~IGlG~mG~~mA~~L~~~--g~~-v~v~dr~~~~~~~~~~~-g~~~-~~s~~~~~~~~~~advVi~~-----vp~~~~ 72 (299)
T PRK12490 3 LGLIGLGKMGGNMAERLRED--GHE-VVGYDVNQEAVDVAGKL-GITA-RHSLEELVSKLEAPRTIWVM-----VPAGEV 72 (299)
T ss_pred EEEEcccHHHHHHHHHHHhC--CCE-EEEEECCHHHHHHHHHC-CCee-cCCHHHHHHhCCCCCEEEEE-----ecCchH
Confidence 34455552 2244444443 345 888898 6555544332 2221 1121111111 3777654 3333 5
Q ss_pred HHHHHHHHHHHcCCCCEEEE
Q 041308 142 CKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii 161 (244)
...++..+...++||..++-
T Consensus 73 ~~~v~~~i~~~l~~g~ivid 92 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVD 92 (299)
T ss_pred HHHHHHHHhccCCCCCEEEE
Confidence 66777888878888765543
No 444
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=45.83 E-value=1.8e+02 Score=24.36 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=52.7
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC---CCCCCCCc-ceEEEecccccc
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG---DMFKSIHV-VDAIFMKWVLTT 136 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g---d~~~~~p~-~D~v~~~~~lh~ 136 (244)
.....+||-+|+| .|..+..+++.. +.+ +++++. +...+.+++..--.++.. +.....+. .|+++-.
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~-v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~----- 232 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAM-GFE-TVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVT----- 232 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEEC-----
Confidence 5666889999886 677777777664 456 777776 655555433211011111 00000112 3766632
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.... ..+..+.+.|+++|+++.+..
T Consensus 233 ~~~~---~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 233 VVSG---AAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred CCcH---HHHHHHHHhcccCCEEEEECC
Confidence 1211 356778889999999998754
No 445
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.57 E-value=1.6e+02 Score=24.66 Aligned_cols=89 Identities=13% Similarity=0.034 Sum_probs=49.6
Q ss_pred ceEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------------------CCeeEEeCCCCC
Q 041308 67 KRLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------------------PEVTHIGGDMFK 120 (244)
Q Consensus 67 ~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------------------~~i~~~~gd~~~ 120 (244)
.+|.=||+|. +..+..+++. +.+ ++++|. +..++.+.+. .++++ ..|+.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~--G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~ 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS--GFQ-TTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH
Confidence 4677788862 2344445544 345 888898 7776654321 12332 223322
Q ss_pred CCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 121 ~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.+..+|+|+.+-.- +.+....+++++.+.++|+..+++.
T Consensus 78 ~~~~aD~Vi~avpe---~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 78 AVADADLVIEAVPE---KLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred hhcCCCEEEEeccC---CHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 24446988865331 1122356788888999887665443
No 446
>PRK08655 prephenate dehydrogenase; Provisional
Probab=45.09 E-value=82 Score=28.37 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=45.1
Q ss_pred eEEEEc-CC-ccH-HHHHHHHHcCCCCeEEEeec-hHHH-HhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHH
Q 041308 68 RLVDVG-GS-AGD-CLRIILQKHCFICEGINFDL-PEVV-AKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 68 ~vLDvG-~G-~G~-~~~~l~~~~p~~~~~~~~D~-~~~i-~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
+|.=|| +| -|. ++..+.+.. .+ +++.|. +... +.+.+ ..+.+ ..|..+....+|+|++.- +.+..
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G--~~-V~v~~r~~~~~~~~a~~-~gv~~-~~~~~e~~~~aDvVIlav-----p~~~~ 71 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKG--FE-VIVTGRDPKKGKEVAKE-LGVEY-ANDNIDAAKDADIVIISV-----PINVT 71 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCC--CE-EEEEECChHHHHHHHHH-cCCee-ccCHHHHhccCCEEEEec-----CHHHH
Confidence 456676 33 443 344444332 35 777787 4443 33332 22221 122212234469888763 44455
Q ss_pred HHHHHHHHHHcCCCCEEEEec
Q 041308 143 KLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii~d 163 (244)
..+++++...++||..++-+-
T Consensus 72 ~~vl~~l~~~l~~~~iViDvs 92 (437)
T PRK08655 72 EDVIKEVAPHVKEGSLLMDVT 92 (437)
T ss_pred HHHHHHHHhhCCCCCEEEEcc
Confidence 677888888888877555433
No 447
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=44.93 E-value=13 Score=28.59 Aligned_cols=91 Identities=12% Similarity=0.051 Sum_probs=51.5
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec--hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL--PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~--~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~ 143 (244)
..+|.=||.|.=..+.++--+-.+++ +++-.. +...+.|++ +..++ .+..+-...+|+|++- ++|+...
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~-V~Vglr~~s~s~~~A~~-~Gf~v--~~~~eAv~~aDvV~~L-----~PD~~q~ 74 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVN-VIVGLREGSASWEKAKA-DGFEV--MSVAEAVKKADVVMLL-----LPDEVQP 74 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-E-EEEEE-TTCHHHHHHHH-TT-EC--CEHHHHHHC-SEEEE------S-HHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCC-EEEEecCCCcCHHHHHH-CCCee--ccHHHHHhhCCEEEEe-----CChHHHH
Confidence 47888899886555555555556777 765555 335555554 23222 1111112235888854 6777667
Q ss_pred HHH-HHHHHHcCCCCEEEEeccc
Q 041308 144 LIM-ENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 144 ~~l-~~~~~~L~pgG~lii~d~~ 165 (244)
++. +++...|+||-.|++.+-+
T Consensus 75 ~vy~~~I~p~l~~G~~L~fahGf 97 (165)
T PF07991_consen 75 EVYEEEIAPNLKPGATLVFAHGF 97 (165)
T ss_dssp HHHHHHHHHHS-TT-EEEESSSH
T ss_pred HHHHHHHHhhCCCCCEEEeCCcc
Confidence 776 8888999999999997653
No 448
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=44.80 E-value=67 Score=27.85 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=48.9
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHH
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~ 143 (244)
..+|.=||.| -|.-....++. .+.+ +++.|. +...+.+.. ..+.+ .+..+-.+.+|+|++... +++..
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d-~G~~-ViV~~r~~~s~~~A~~-~G~~v--~sl~Eaak~ADVV~llLP-----d~~t~ 85 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRD-SGVE-VVVGVRPGKSFEVAKA-DGFEV--MSVSEAVRTAQVVQMLLP-----DEQQA 85 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHH-CcCE-EEEEECcchhhHHHHH-cCCEE--CCHHHHHhcCCEEEEeCC-----ChHHH
Confidence 4778888776 34322222222 3566 777765 333222222 23332 232222445698886543 33334
Q ss_pred HHH-HHHHHHcCCCCEEEEecc
Q 041308 144 LIM-ENYYKALLAGRKLIACEP 164 (244)
Q Consensus 144 ~~l-~~~~~~L~pgG~lii~d~ 164 (244)
.++ +++...|+||..|++.+-
T Consensus 86 ~V~~~eil~~MK~GaiL~f~hg 107 (335)
T PRK13403 86 HVYKAEVEENLREGQMLLFSHG 107 (335)
T ss_pred HHHHHHHHhcCCCCCEEEECCC
Confidence 555 579999999999988764
No 449
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=44.76 E-value=1.3e+02 Score=25.42 Aligned_cols=92 Identities=11% Similarity=0.037 Sum_probs=47.2
Q ss_pred CcceEEEEcCC--ccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-CCeeEEeCC----------CCCCCCcceEEEec
Q 041308 65 GVKRLVDVGGS--AGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-PEVTHIGGD----------MFKSIHVVDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-~~i~~~~gd----------~~~~~p~~D~v~~~ 131 (244)
...+|+=+|+| .|.++..|.+.. .. ++++..... +..++. -++.-..++ ..+..+..|+|++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g--~~-V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vila 79 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAG--FD-VHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVG 79 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCC--Ce-EEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEE
Confidence 34689999987 344566666544 34 666665221 222221 111100111 11112335888766
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
---++ ...+++.+...++|++.++.....
T Consensus 80 vK~~~-----~~~~~~~l~~~~~~~~~iv~lqNG 108 (313)
T PRK06249 80 LKTTA-----NALLAPLIPQVAAPDAKVLLLQNG 108 (313)
T ss_pred ecCCC-----hHhHHHHHhhhcCCCCEEEEecCC
Confidence 33332 235667777778899988776543
No 450
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=44.55 E-value=1.3e+02 Score=26.84 Aligned_cols=99 Identities=14% Similarity=0.098 Sum_probs=47.3
Q ss_pred CcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHH-hCCCCCCeeEEe-CCCCCCCCcceEEEecccccc-CCH
Q 041308 65 GVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVA-KAPSIPEVTHIG-GDMFKSIHVVDAIFMKWVLTT-WTD 139 (244)
Q Consensus 65 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~-~a~~~~~i~~~~-gd~~~~~p~~D~v~~~~~lh~-~~~ 139 (244)
...+|+-+|+| .|..+...+....--+ +++++. +.-.. .++... ..... .|..+.+..+|+|+..-.-.+ +-.
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~-V~v~~r~~~ra~~la~~~g-~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~ 258 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRK-ITVANRTLERAEELAEEFG-GEAIPLDELPEALAEADIVISSTGAPHPIIG 258 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCe-EEEEeCCHHHHHHHHHHcC-CcEeeHHHHHHHhccCCEEEECCCCCCcEEc
Confidence 45799999986 4544444444332224 777887 44332 333222 12222 222122445699987643322 211
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 140 DECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
. ..++...+ -+.++-.+++|...|.+
T Consensus 259 ~---~~l~~~~~-~~~~~~~vviDla~Prd 284 (423)
T PRK00045 259 K---GMVERALK-ARRHRPLLLVDLAVPRD 284 (423)
T ss_pred H---HHHHHHHh-hccCCCeEEEEeCCCCC
Confidence 1 22333221 13345566778766554
No 451
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=44.20 E-value=86 Score=26.27 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=38.0
Q ss_pred CccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCH-HHHHHHH---H
Q 041308 75 SAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTD-DECKLIM---E 147 (244)
Q Consensus 75 G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~-~~~~~~l---~ 147 (244)
|.|..+..+++.. .+.+ +++.|. +...+...+. .+.. ..+..+-....|+|++. +++ .....++ +
T Consensus 3 GlG~mG~~mA~~L~~~G~~-V~v~dr~~~~~~~l~~~-g~~~-~~s~~~~~~~advVil~-----vp~~~~~~~v~~g~~ 74 (288)
T TIGR01692 3 GLGNMGGPMAANLLKAGHP-VRVFDLFPDAVEEAVAA-GAQA-AASPAEAAEGADRVITM-----LPAGQHVISVYSGDE 74 (288)
T ss_pred cccHhHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHc-CCee-cCCHHHHHhcCCEEEEe-----CCChHHHHHHHcCcc
Confidence 3444444444332 2235 888888 6555544332 2221 11110112234888765 333 3345555 5
Q ss_pred HHHHHcCCCCEEEE
Q 041308 148 NYYKALLAGRKLIA 161 (244)
Q Consensus 148 ~~~~~L~pgG~lii 161 (244)
.+...++||-.++.
T Consensus 75 ~l~~~~~~g~~vid 88 (288)
T TIGR01692 75 GILPKVAKGSLLID 88 (288)
T ss_pred hHhhcCCCCCEEEE
Confidence 67777777654443
No 452
>PLN02712 arogenate dehydrogenase
Probab=44.14 E-value=82 Score=30.17 Aligned_cols=85 Identities=9% Similarity=-0.019 Sum_probs=47.2
Q ss_pred CcceEEEEcCCc--cHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCC-CcceEEEeccccccCCHHH
Q 041308 65 GVKRLVDVGGSA--GDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSI-HVVDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 65 ~~~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~-p~~D~v~~~~~lh~~~~~~ 141 (244)
...+|.=||+|. |.++..+.+. +.+ ++++|.....+.+++. .+.. ..|..+.. ..+|+|+++ .++..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~--G~~-V~~~dr~~~~~~A~~~-Gv~~-~~d~~e~~~~~aDvViLa-----vP~~~ 120 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQ--GHT-VLAHSRSDHSLAARSL-GVSF-FLDPHDLCERHPDVILLC-----TSIIS 120 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC--CCE-EEEEeCCHHHHHHHHc-CCEE-eCCHHHHhhcCCCEEEEc-----CCHHH
Confidence 346899999873 4455555543 346 8888873333333332 2332 22221112 235988876 45556
Q ss_pred HHHHHHHHH-HHcCCCCEE
Q 041308 142 CKLIMENYY-KALLAGRKL 159 (244)
Q Consensus 142 ~~~~l~~~~-~~L~pgG~l 159 (244)
...+++++. ..++||..+
T Consensus 121 ~~~vl~~l~~~~l~~g~iV 139 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLF 139 (667)
T ss_pred HHHHHHhhhhhcCCCCeEE
Confidence 677777775 457777633
No 453
>PLN02740 Alcohol dehydrogenase-like
Probab=44.01 E-value=2.2e+02 Score=24.79 Aligned_cols=93 Identities=13% Similarity=0.039 Sum_probs=55.2
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCC-----CCCC----CC-cceEEEe
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGD-----MFKS----IH-VVDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd-----~~~~----~p-~~D~v~~ 130 (244)
+++..+||=+|+| .|..+..+++....-+ ++++|. +..++.+++..--.++..+ +.+. .+ ..|+++-
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~-Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid 274 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASK-IIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFE 274 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCc-EEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEE
Confidence 6677899999875 5666777777653225 888887 7777777654211222111 1110 11 1376653
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecc
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAG-RKLIACEP 164 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~ 164 (244)
. .... ..++...+.+++| |+++++-.
T Consensus 275 ~-----~G~~---~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 275 C-----AGNV---EVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred C-----CCCh---HHHHHHHHhhhcCCCEEEEEcc
Confidence 2 2222 4567778889997 99988754
No 454
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=43.64 E-value=25 Score=27.34 Aligned_cols=44 Identities=11% Similarity=-0.134 Sum_probs=31.3
Q ss_pred EEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEe
Q 041308 71 DVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIG 115 (244)
Q Consensus 71 DvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~ 115 (244)
=+-||||.=....+.++|+++ +..+--+.....+++..+.++++
T Consensus 62 IliCGTGiG~siaANKv~GIR-AAl~~d~~sA~~ar~hNnaNVL~ 105 (171)
T TIGR01119 62 VCICGTGVGINNAVNKVPGVR-SALVRDMTSALYAKEELNANVIG 105 (171)
T ss_pred EEEcCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHhcCCcEEE
Confidence 345888877778889999999 76665566667777765555554
No 455
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=43.56 E-value=24 Score=27.39 Aligned_cols=43 Identities=14% Similarity=-0.112 Sum_probs=31.2
Q ss_pred EcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEe
Q 041308 72 VGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIG 115 (244)
Q Consensus 72 vG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~ 115 (244)
+-||||.=..-.+.++|+++ +..+--+.....+|...+.++++
T Consensus 63 liCGTGiG~siaANKv~GIR-AA~~~d~~sA~~aR~hNnaNVL~ 105 (171)
T PRK08622 63 CICGTGVGISNAVNKVPGIR-SALVRDMTSALYAKEELNANVIG 105 (171)
T ss_pred EEcCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHhcCCcEEE
Confidence 45788877778889999999 76665577777777765555554
No 456
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=43.55 E-value=1.4e+02 Score=25.53 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=53.8
Q ss_pred CcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHH-HhCC------CC-CCeeEEeCCCCCCCCcceEEEecccc
Q 041308 65 GVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVV-AKAP------SI-PEVTHIGGDMFKSIHVVDAIFMKWVL 134 (244)
Q Consensus 65 ~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i-~~a~------~~-~~i~~~~gd~~~~~p~~D~v~~~~~l 134 (244)
.+.+|.=||+|. |......+...+-...+..+|. .+.. ..+. .. .++.+..+|+ +.+..+|+|++..-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 346999999975 6555554444443322788886 3221 1111 11 3455555543 346667998876544
Q ss_pred ccCC---HH----HHHHHHHHHHHHcC---CCCEEEEec
Q 041308 135 TTWT---DD----ECKLIMENYYKALL---AGRKLIACE 163 (244)
Q Consensus 135 h~~~---~~----~~~~~l~~~~~~L~---pgG~lii~d 163 (244)
-.-+ .. ....+++++...++ |.|+++++-
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 2111 11 13456677655554 788888765
No 457
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.52 E-value=1e+02 Score=25.99 Aligned_cols=88 Identities=8% Similarity=0.118 Sum_probs=46.9
Q ss_pred cceEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------------------CCeeEEeCCCCCCCCc
Q 041308 66 VKRLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------------------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 66 ~~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------------------~~i~~~~gd~~~~~p~ 124 (244)
..+|.=||+|. +.++..+++. +.+ ++++|. ++.++.+++. .++++ ..|..+....
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~--g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~ 79 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK--GLQ-VVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAVSG 79 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC--CCe-EEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHhcc
Confidence 45778888884 3344445443 456 888997 6555544321 11222 1222111334
Q ss_pred ceEEEeccccccCCHH--HHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 VDAIFMKWVLTTWTDD--ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~--~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+|+|+.. ++++ ....+++++...++++ .+++..
T Consensus 80 aDlVi~a-----v~~~~~~~~~v~~~l~~~~~~~-~ii~s~ 114 (311)
T PRK06130 80 ADLVIEA-----VPEKLELKRDVFARLDGLCDPD-TIFATN 114 (311)
T ss_pred CCEEEEe-----ccCcHHHHHHHHHHHHHhCCCC-cEEEEC
Confidence 5888865 3322 2456788888777664 444433
No 458
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=43.26 E-value=21 Score=31.57 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=65.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------C-CeeEEeCCCCCCC---Cc-ceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------P-EVTHIGGDMFKSI---HV-VDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~-~i~~~~gd~~~~~---p~-~D~v~~~ 131 (244)
+.-++||.=+|+|.=++..++..++...++.-|+ +..++..+++ + ++++...|+-..+ .. .|+|=+-
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4579999999999999999999766554888999 8877777653 3 6888888764322 22 3776654
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
-. .. ...+|..+.++++.||.|.+.-+
T Consensus 129 Pf----GS--p~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 129 PF----GS--PAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -S----S----HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CC----CC--ccHhHHHHHHHhhcCCEEEEecc
Confidence 22 12 24789999999999999999755
No 459
>PRK07574 formate dehydrogenase; Provisional
Probab=43.23 E-value=70 Score=28.34 Aligned_cols=87 Identities=13% Similarity=0.026 Sum_probs=46.0
Q ss_pred ceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHH
Q 041308 67 KRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~ 143 (244)
.+|.=||.| ..++.++++. -+.+ +++.|. +...+..+. ..+.. ..++.+-++.+|+|++..-+. ++..
T Consensus 193 ktVGIvG~G--~IG~~vA~~l~~fG~~-V~~~dr~~~~~~~~~~-~g~~~-~~~l~ell~~aDvV~l~lPlt----~~T~ 263 (385)
T PRK07574 193 MTVGIVGAG--RIGLAVLRRLKPFDVK-LHYTDRHRLPEEVEQE-LGLTY-HVSFDSLVSVCDVVTIHCPLH----PETE 263 (385)
T ss_pred CEEEEECCC--HHHHHHHHHHHhCCCE-EEEECCCCCchhhHhh-cCcee-cCCHHHHhhcCCEEEEcCCCC----HHHH
Confidence 567777665 4444444432 2567 888887 311111111 12222 122222255679998776653 3334
Q ss_pred HHH-HHHHHHcCCCCEEEEe
Q 041308 144 LIM-ENYYKALLAGRKLIAC 162 (244)
Q Consensus 144 ~~l-~~~~~~L~pgG~lii~ 162 (244)
.++ ++....||||..|+-+
T Consensus 264 ~li~~~~l~~mk~ga~lIN~ 283 (385)
T PRK07574 264 HLFDADVLSRMKRGSYLVNT 283 (385)
T ss_pred HHhCHHHHhcCCCCcEEEEC
Confidence 444 4577888998776643
No 460
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=42.52 E-value=71 Score=26.97 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=45.4
Q ss_pred EEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC---CCCcceEEEeccccccCCHHHH
Q 041308 69 LVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK---SIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 69 vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~---~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
|-=||+|. +.++..+.+. +.+ +++.|. +...+..++.. +.. ..+..+ .+...|+|++. +++...
T Consensus 3 Ig~IGlG~mG~~la~~L~~~--g~~-V~~~dr~~~~~~~l~~~g-~~~-~~s~~~~~~~~~~~dvIi~~-----vp~~~~ 72 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRLAKR--GHD-CVGYDHDQDAVKAMKEDR-TTG-VANLRELSQRLSAPRVVWVM-----VPHGIV 72 (298)
T ss_pred EEEEcchHHHHHHHHHHHHC--CCE-EEEEECCHHHHHHHHHcC-Ccc-cCCHHHHHhhcCCCCEEEEE-----cCchHH
Confidence 44567663 2244445443 345 788898 66655554421 111 111111 12234888765 444566
Q ss_pred HHHHHHHHHHcCCCCEEEE
Q 041308 143 KLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii 161 (244)
..+++++...|+||-.++-
T Consensus 73 ~~v~~~l~~~l~~g~ivid 91 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVID 91 (298)
T ss_pred HHHHHHHHhhCCCCCEEEE
Confidence 7788899888988754443
No 461
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=42.49 E-value=27 Score=26.57 Aligned_cols=44 Identities=9% Similarity=-0.152 Sum_probs=30.6
Q ss_pred EEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEe
Q 041308 71 DVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIG 115 (244)
Q Consensus 71 DvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~ 115 (244)
=+-||||.=..-.+.++|+++ +..+--+.....++...+.++++
T Consensus 66 IliCGtGiG~siaANK~~GIR-Aa~~~d~~~A~~ar~hNnaNVL~ 109 (151)
T PTZ00215 66 ILVCGSGIGISIAANKVKGIR-CALCHDHYTARMSRQHNNANVLA 109 (151)
T ss_pred EEEcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHhcCCcEEE
Confidence 345888877778889999999 76665566666777655555444
No 462
>PLN03139 formate dehydrogenase; Provisional
Probab=42.20 E-value=31 Score=30.58 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=47.0
Q ss_pred cceEEEEcCCccHHHHHHHHHc--CCCCeEEEeechH-HHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKH--CFICEGINFDLPE-VVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~~~-~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
+.+|.=||. |..++.++++. .+.+ +++.|... -.+..++ ..+... .++.+-++..|+|++..-++ ++.
T Consensus 199 gktVGIVG~--G~IG~~vA~~L~afG~~-V~~~d~~~~~~~~~~~-~g~~~~-~~l~ell~~sDvV~l~lPlt----~~T 269 (386)
T PLN03139 199 GKTVGTVGA--GRIGRLLLQRLKPFNCN-LLYHDRLKMDPELEKE-TGAKFE-EDLDAMLPKCDVVVINTPLT----EKT 269 (386)
T ss_pred CCEEEEEee--cHHHHHHHHHHHHCCCE-EEEECCCCcchhhHhh-cCceec-CCHHHHHhhCCEEEEeCCCC----HHH
Confidence 357777775 55555555543 3567 88888621 1111111 122221 12222255679988765442 333
Q ss_pred HHHH-HHHHHHcCCCCEEEEe
Q 041308 143 KLIM-ENYYKALLAGRKLIAC 162 (244)
Q Consensus 143 ~~~l-~~~~~~L~pgG~lii~ 162 (244)
..++ ++..+.||||..|+-+
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~ 290 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNN 290 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEEC
Confidence 4444 5678888998777653
No 463
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=42.06 E-value=90 Score=26.35 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=42.2
Q ss_pred EEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCC---cceEEEeccccccCCHHHH
Q 041308 69 LVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIH---VVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 69 vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p---~~D~v~~~~~lh~~~~~~~ 142 (244)
|-=||+|. ...+..+++. +.+ +++.|. +...+...+ ..+.. ..+..+-.. ..|+|++... +++..
T Consensus 3 Ig~IGlG~MG~~mA~~L~~~--g~~-v~v~dr~~~~~~~~~~-~g~~~-~~~~~e~~~~~~~~dvvi~~v~----~~~~~ 73 (301)
T PRK09599 3 LGMIGLGRMGGNMARRLLRG--GHE-VVGYDRNPEAVEALAE-EGATG-ADSLEELVAKLPAPRVVWLMVP----AGEIT 73 (301)
T ss_pred EEEEcccHHHHHHHHHHHHC--CCe-EEEEECCHHHHHHHHH-CCCee-cCCHHHHHhhcCCCCEEEEEec----CCcHH
Confidence 44466653 2244555543 345 888898 665554433 22222 111111011 1377665422 12245
Q ss_pred HHHHHHHHHHcCCCCEEEE
Q 041308 143 KLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii 161 (244)
..++..+...|++|..++-
T Consensus 74 ~~v~~~l~~~l~~g~ivid 92 (301)
T PRK09599 74 DATIDELAPLLSPGDIVID 92 (301)
T ss_pred HHHHHHHHhhCCCCCEEEe
Confidence 5677888888888754443
No 464
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=42.00 E-value=62 Score=28.21 Aligned_cols=100 Identities=14% Similarity=0.065 Sum_probs=65.0
Q ss_pred HhccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC----CCCCC----CCc-
Q 041308 56 VLDGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG----DMFKS----IHV- 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g----d~~~~----~p~- 124 (244)
++...+ .++..++.=+||| -|..++.-++..-.-+ ++++|+ +.-++.|++..-.+++.. |.-+- .+.
T Consensus 177 v~nta~-v~~G~tvaV~GlGgVGlaaI~gA~~agA~~-IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 177 VVNTAK-VEPGDTVAVFGLGGVGLAAIQGAKAAGAGR-IIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred hhhccc-CCCCCeEEEEeccHhHHHHHHHHHHcCCce-EEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCC
Confidence 444444 5677889889975 6777777777766666 999999 999999988644444332 11111 121
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.|..+ ...-. ...++...+++.++|..+++-.-
T Consensus 255 ~d~~~-----e~~G~---~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 255 ADYAF-----ECVGN---VEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCEEE-----EccCC---HHHHHHHHHHHhcCCeEEEEecC
Confidence 25543 22222 34688888899999999987553
No 465
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=41.98 E-value=1.6e+02 Score=25.36 Aligned_cols=91 Identities=15% Similarity=-0.006 Sum_probs=49.0
Q ss_pred CCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hH-HHHhCCCCCCeeEEe-CC---CCCCCCcceEEEecccccc
Q 041308 64 KGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PE-VVAKAPSIPEVTHIG-GD---MFKSIHVVDAIFMKWVLTT 136 (244)
Q Consensus 64 ~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~-~i~~a~~~~~i~~~~-gd---~~~~~p~~D~v~~~~~lh~ 136 (244)
.+..+||=.|+| .|..+..+++.. +.+ +++++. +. ..+.+++..--.++. .+ +.+.....|+++-.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~-vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~----- 254 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLK-VTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDT----- 254 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEEC-----
Confidence 456788888865 677777777765 456 666665 32 222333221111111 11 00001123766632
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.... ..++++.+.|++||+++++-.
T Consensus 255 ~g~~---~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 255 VSAV---HALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred CCCH---HHHHHHHHHhcCCcEEEEeCC
Confidence 1111 356778889999999998753
No 466
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=41.94 E-value=98 Score=29.82 Aligned_cols=151 Identities=14% Similarity=0.037 Sum_probs=78.3
Q ss_pred CcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-----------------------CCeeEEeCCCC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-----------------------PEVTHIGGDMF 119 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-----------------------~~i~~~~gd~~ 119 (244)
+..+|.=||+|+=.-.++..-. ..+.. ++..|. ++.++.+... .++++. .|+
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~-V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~- 379 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIP-VRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDY- 379 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CCh-
Confidence 3468889988753333332221 24567 899998 7666554321 345543 233
Q ss_pred CCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhh--------h--h
Q 041308 120 KSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVM--------T--I 189 (244)
Q Consensus 120 ~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~--------~--~ 189 (244)
+.+..+|+|+=. +...+. ...++++++-+.++|+..|......++-..-.....+-.+...+... . .
T Consensus 380 ~~~~~adlViEa-v~E~l~--~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv 456 (699)
T TIGR02440 380 RGFKDVDIVIEA-VFEDLA--LKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVI 456 (699)
T ss_pred HHhccCCEEEEe-ccccHH--HHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEe
Confidence 334456877743 444432 34688999999999987776544433211000000000001111000 0 0
Q ss_pred hccCceecCHHHHHHHHHhCCCCeEEEEEccc
Q 041308 190 YRAKGKHKTEQEFKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 190 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 221 (244)
........+.+...+++++.|...+.+.+.++
T Consensus 457 ~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pG 488 (699)
T TIGR02440 457 PHAGTSEQTIATTVALAKKQGKTPIVVADKAG 488 (699)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEccccc
Confidence 01112233556778889999999888866544
No 467
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=41.63 E-value=59 Score=29.22 Aligned_cols=87 Identities=16% Similarity=0.043 Sum_probs=48.8
Q ss_pred CcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHH
Q 041308 65 GVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 65 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
.+.+++=+|+| .|......++.. +.+ ++++|. +.-...+.. ..+.+ .++.+.+..+|+|+..- ..
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~-ViV~d~dp~ra~~A~~-~G~~v--~~l~eal~~aDVVI~aT-----G~--- 277 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GAR-VIVTEVDPICALQAAM-DGFRV--MTMEEAAELGDIFVTAT-----GN--- 277 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCE-EEEEcCCchhhHHHHh-cCCEe--cCHHHHHhCCCEEEECC-----CC---
Confidence 45789999987 333333334333 457 888887 543322222 22222 12212244469887642 11
Q ss_pred HHHHH-HHHHHcCCCCEEEEecc
Q 041308 143 KLIME-NYYKALLAGRKLIACEP 164 (244)
Q Consensus 143 ~~~l~-~~~~~L~pgG~lii~d~ 164 (244)
..++. ...+.+|+|+.++.+-.
T Consensus 278 ~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCC
Confidence 23454 67888999998887643
No 468
>PRK06223 malate dehydrogenase; Reviewed
Probab=41.21 E-value=1.5e+02 Score=24.92 Aligned_cols=94 Identities=17% Similarity=0.126 Sum_probs=47.5
Q ss_pred ceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHh-CCC-------C-CCeeEE-eCCCCCCCCcceEEEecccc
Q 041308 67 KRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAK-APS-------I-PEVTHI-GGDMFKSIHVVDAIFMKWVL 134 (244)
Q Consensus 67 ~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~-a~~-------~-~~i~~~-~gd~~~~~p~~D~v~~~~~l 134 (244)
.+|.=||+|. |......+....-.+ ++.+|. ++..+. +.+ . ...++. .+|+ +.+..+|+|++.--.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~e-v~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~ 80 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGD-VVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV 80 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeE-EEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence 4678899987 665555444432126 888997 433211 111 0 122333 2444 345567998865321
Q ss_pred cc---CC--------HHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 135 TT---WT--------DDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 135 h~---~~--------~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
-. .+ -+....+++++.+.. |.+.+++..
T Consensus 81 p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~t 119 (307)
T PRK06223 81 PRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVT 119 (307)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 10 00 122344555555554 667777653
No 469
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=40.97 E-value=52 Score=28.19 Aligned_cols=90 Identities=13% Similarity=0.075 Sum_probs=60.3
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeE-EEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEG-INFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~-~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~ 143 (244)
..+|.=||||+=..+.++--+-.++. + +++-. ...-+.|.+ +..++ .+..+-.+.+|+|++- .||+...
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGln-ViiGlr~g~~s~~kA~~-dGf~V--~~v~ea~k~ADvim~L-----~PDe~q~ 88 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLN-VIIGLRKGSSSWKKAKE-DGFKV--YTVEEAAKRADVVMIL-----LPDEQQK 88 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCc-EEEEecCCchhHHHHHh-cCCEe--ecHHHHhhcCCEEEEe-----CchhhHH
Confidence 47999999999888888777777777 4 33332 222333433 34333 3332235557988843 6777777
Q ss_pred HHHH-HHHHHcCCCCEEEEecc
Q 041308 144 LIME-NYYKALLAGRKLIACEP 164 (244)
Q Consensus 144 ~~l~-~~~~~L~pgG~lii~d~ 164 (244)
.+.+ ++.-.|+.|-.|.+.+-
T Consensus 89 ~vy~~~I~p~Lk~G~aL~FaHG 110 (338)
T COG0059 89 EVYEKEIAPNLKEGAALGFAHG 110 (338)
T ss_pred HHHHHHhhhhhcCCceEEeccc
Confidence 7777 89999999998888664
No 470
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=40.90 E-value=2.1e+02 Score=24.35 Aligned_cols=90 Identities=4% Similarity=-0.096 Sum_probs=51.3
Q ss_pred eEEEEcCC--ccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCC--C---------CCCCcceEEEecccc
Q 041308 68 RLVDVGGS--AGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDM--F---------KSIHVVDAIFMKWVL 134 (244)
Q Consensus 68 ~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~--~---------~~~p~~D~v~~~~~l 134 (244)
+|+=+|+| .+.++..|++.. .. ++.+-.+..++..++. .+.+...+- . +..+..|+|++.-=-
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g--~~-V~~~~R~~~~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa 77 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG--HD-VTLLVRSRRLEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA 77 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC--Ce-EEEEecHHHHHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEEecc
Confidence 67888988 444566666555 23 5555555545555543 222222111 1 112235888765332
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
-+...+++.+...++|...+++.....
T Consensus 78 -----~q~~~al~~l~~~~~~~t~vl~lqNG~ 104 (307)
T COG1893 78 -----YQLEEALPSLAPLLGPNTVVLFLQNGL 104 (307)
T ss_pred -----ccHHHHHHHhhhcCCCCcEEEEEeCCC
Confidence 233467899999999998888766543
No 471
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=40.78 E-value=2.3e+02 Score=24.26 Aligned_cols=91 Identities=9% Similarity=0.013 Sum_probs=54.4
Q ss_pred CCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC-CCCCeeEEeC----CCCCC----CCc-ceEEE
Q 041308 63 FKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAP-SIPEVTHIGG----DMFKS----IHV-VDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~-~~~~i~~~~g----d~~~~----~p~-~D~v~ 129 (244)
.+++.+||=.|+ |.|..+..+++.. +.+ +++++. +.-.+.++ +..--.++.. ++.+. .+. .|+++
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~-Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~ 233 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH-GCY-VVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYF 233 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCE-EEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEE
Confidence 567789999986 4888888888875 567 777776 55555443 2211111211 11111 122 37666
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
-. ... ..+..+.+.|++||+++++-.
T Consensus 234 d~-----vG~----~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 234 DN-----VGG----DMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred EC-----CCH----HHHHHHHHHhccCCEEEEECc
Confidence 22 222 346778889999999998653
No 472
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=40.50 E-value=1.5e+02 Score=26.80 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=53.7
Q ss_pred CCCcceEEEEcC-Cc-cHHHHH-HHHH-------cCCCCeEEEeec-hHHHH-hCCC-------C-CCeeEEeCCCCCCC
Q 041308 63 FKGVKRLVDVGG-SA-GDCLRI-ILQK-------HCFICEGINFDL-PEVVA-KAPS-------I-PEVTHIGGDMFKSI 122 (244)
Q Consensus 63 ~~~~~~vLDvG~-G~-G~~~~~-l~~~-------~p~~~~~~~~D~-~~~i~-~a~~-------~-~~i~~~~gd~~~~~ 122 (244)
|++..+|.=+|+ |. |..... ++.. .-..+ .+.+|. .+..+ .+.+ . .++.+..+|+ +.+
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~e-LvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~y-e~~ 174 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALK-LLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPY-EVF 174 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccE-EEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCH-HHh
Confidence 677899999998 75 554333 3332 11124 677775 32211 1111 0 2344444443 446
Q ss_pred CcceEEEeccccccCCH-------HHHHHHHHHHHHHc----CCCCEEEEec
Q 041308 123 HVVDAIFMKWVLTTWTD-------DECKLIMENYYKAL----LAGRKLIACE 163 (244)
Q Consensus 123 p~~D~v~~~~~lh~~~~-------~~~~~~l~~~~~~L----~pgG~lii~d 163 (244)
..+|+|++..-.-.-+. ....++++++.+.+ +|.|+++++-
T Consensus 175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 66799887755422121 12345666666665 5679988865
No 473
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=40.46 E-value=43 Score=29.44 Aligned_cols=93 Identities=9% Similarity=0.092 Sum_probs=48.5
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CC-eeEEeCCC--CCC-CCcceEEEeccccccCC
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PE-VTHIGGDM--FKS-IHVVDAIFMKWVLTTWT 138 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~-i~~~~gd~--~~~-~p~~D~v~~~~~lh~~~ 138 (244)
..+++=+|+| .|..+...++.. +.+ ++++|. +...+.+... .. +.....+. +.. +..+|+|+..-....-.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~-V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GAT-VTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCe-EEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 4679999987 666666666655 457 899997 5554433321 11 11111110 011 33469888653221100
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 139 DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.+ .-+-++..+.++||+.++-+
T Consensus 245 ~p--~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 245 AP--KLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CC--cCcCHHHHhcCCCCCEEEEE
Confidence 01 11235555678999877654
No 474
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=39.79 E-value=60 Score=25.01 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 142 CKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
-..+++-+++.|.|||++++ +.+.+.. .. .++ -.|......-+-..|.++||+..+.--.
T Consensus 65 E~~l~~~~~~~l~pg~~lfV-eY~~D~e------T~-------~~L----~~G~pp~~TrLG~~Ll~~GFtwfKdWYf 124 (170)
T PF06557_consen 65 EDELYKLFSRYLEPGGRLFV-EYVEDRE------TR-------RQL----QRGVPPAETRLGFSLLKAGFTWFKDWYF 124 (170)
T ss_dssp HHHHHHHHHTT----SEEEE-E-TT-HH------HH-------HHH----HTT--GGGSHHHHHHHTTT--EEEEEE-
T ss_pred HHHHHHHHHHHhhhcCeEEE-EEecCHH------HH-------HHH----HcCCCcccchhHHHHHhCCcEEEeeeec
Confidence 35889999999999999996 3322111 00 011 1122222334677889999998876444
No 475
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=39.43 E-value=26 Score=32.04 Aligned_cols=53 Identities=11% Similarity=-0.029 Sum_probs=37.0
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC----CCCeEEEeec-hHHHHhCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC----FICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~~D~-~~~i~~a~~ 107 (244)
.+-+++.+. ..+..+|.|-.||+|.+.....+... ++. ..|.+. +.+...++.
T Consensus 175 ~~liv~~l~-~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~-~yGqE~~~~t~~l~~m 232 (489)
T COG0286 175 SELIVELLD-PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIF-IYGQEINDTTYRLAKM 232 (489)
T ss_pred HHHHHHHcC-CCCCCeecCCCCchhHHHHHHHHHHHhhcccee-EEEEeCCHHHHHHHHH
Confidence 344556665 35667999999999998777665542 366 888896 666666654
No 476
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=39.33 E-value=66 Score=27.57 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCCeEEEeec-h-----HHHHhCCCCCCeeEEeCCCCCC
Q 041308 79 CLRIILQKHCFICEGINFDL-P-----EVVAKAPSIPEVTHIGGDMFKS 121 (244)
Q Consensus 79 ~~~~l~~~~p~~~~~~~~D~-~-----~~i~~a~~~~~i~~~~gd~~~~ 121 (244)
+.+.+++.+|+.+ ++++|. . +.+......++..|+++|+.+.
T Consensus 16 fvr~~~~~~~d~~-v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~ 63 (340)
T COG1088 16 FVRYILNKHPDDH-VVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDR 63 (340)
T ss_pred HHHHHHhcCCCce-EEEEecccccCCHHHHHhhhcCCCceEEeccccCH
Confidence 4556667789888 999994 2 2222233348999999999754
No 477
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.17 E-value=1.1e+02 Score=25.69 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=53.4
Q ss_pred ceEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-----------C------------CCeeEEeCCCCC
Q 041308 67 KRLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPS-----------I------------PEVTHIGGDMFK 120 (244)
Q Consensus 67 ~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-----------~------------~~i~~~~gd~~~ 120 (244)
.+|-=||+|+ +.++..++.. +.. ++..|. ++.++.+++ . .++++ ..|+ +
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~ 80 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVD-VLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-G 80 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCE-EEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-H
Confidence 4788888883 3344444443 556 999998 777765331 1 23443 3344 3
Q ss_pred CCCcceEEEeccccccCCHHHHHHHHHHHHHHc-CCCCEEEEecccCC
Q 041308 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKAL-LAGRKLIACEPVLP 167 (244)
Q Consensus 121 ~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L-~pgG~lii~d~~~~ 167 (244)
.+..+|+|+-+ +.... +....+++++.+.+ +|+..++.....++
T Consensus 81 ~~~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~snTS~~~ 125 (286)
T PRK07819 81 DFADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLASNTSSIP 125 (286)
T ss_pred HhCCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 34446877754 33322 22456788888888 77766655444333
No 478
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=38.93 E-value=2.4e+02 Score=23.81 Aligned_cols=93 Identities=14% Similarity=0.051 Sum_probs=51.5
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCC--CCC----CCc--ceEEEecc
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDM--FKS----IHV--VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~--~~~----~p~--~D~v~~~~ 132 (244)
..+..+||=+|+| .|..+..+++...--+ +++++. +.-.+.+++..--.++...- .+. .+. .|+|+-.
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~-vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~- 238 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAED-VIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIEC- 238 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEEC-
Confidence 5567888888864 5556666776653223 677776 66656554432111111100 011 111 3776632
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.... ..+....+.|+++|+++++-.
T Consensus 239 ----~g~~---~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 239 ----SGNT---AARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ----CCCH---HHHHHHHHHhhcCCEEEEEcC
Confidence 1222 345677788999999998754
No 479
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=38.65 E-value=1.1e+02 Score=25.28 Aligned_cols=89 Identities=17% Similarity=0.073 Sum_probs=51.6
Q ss_pred EEEEcCCccHHHHHHHHHcC--CCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc-----c-eEEEeccccccCC
Q 041308 69 LVDVGGSAGDCLRIILQKHC--FICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV-----V-DAIFMKWVLTTWT 138 (244)
Q Consensus 69 vLDvG~G~G~~~~~l~~~~p--~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~-----~-D~v~~~~~lh~~~ 138 (244)
||=.|+ +|.....++++.- +.+ ++++|. +.-..... .++.++.+|..+. ... . |+|+-....++..
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~~~~ 78 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLAAGHD-VRGLDRLRDGLDPLL--SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQSSVP 78 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHhCCCe-EEEEeCCCccccccc--cccceeeecccchHHHHHHHhcCCCEEEEccccCchh
Confidence 566666 9999988888765 345 888997 33322222 5778888887664 111 2 7777665555433
Q ss_pred HH----------HHHHHHHHHHHHcCC-C-CEEEE
Q 041308 139 DD----------ECKLIMENYYKALLA-G-RKLIA 161 (244)
Q Consensus 139 ~~----------~~~~~l~~~~~~L~p-g-G~lii 161 (244)
.. ......+++.++.+. | -++++
T Consensus 79 ~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~ 113 (314)
T COG0451 79 DSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVF 113 (314)
T ss_pred hhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 22 223345555666654 4 34444
No 480
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=38.36 E-value=25 Score=26.42 Aligned_cols=41 Identities=7% Similarity=-0.088 Sum_probs=26.9
Q ss_pred CCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEe
Q 041308 74 GSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIG 115 (244)
Q Consensus 74 ~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~ 115 (244)
||||.=..-.+.++|+++ +..+--+...+.+|...+.++.+
T Consensus 63 CGtGiG~siaANK~~GIR-AA~~~d~~~A~~ar~hNnaNVL~ 103 (141)
T TIGR01118 63 DAYGAGSFMVATKIKGMI-AAEVSDERSAYMTRGHNNARMIT 103 (141)
T ss_pred cCCCHhHhhhhhcCCCeE-EEEECCHHHHHHHHHHcCCcEEE
Confidence 566665666788889988 66555566666777654544444
No 481
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=38.31 E-value=98 Score=23.99 Aligned_cols=91 Identities=10% Similarity=0.034 Sum_probs=48.3
Q ss_pred EEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------------------CCeeEEeCCCCCCCCc
Q 041308 69 LVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------------------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 69 vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------------------~~i~~~~gd~~~~~p~ 124 (244)
|.=||+|+=.-.++..-...+.+ ++.+|. ++.++.+++. .++++. .|+ +....
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl-~~~~~ 78 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYE-VTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDL-EEAVD 78 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSE-EEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSG-GGGCT
T ss_pred EEEEcCCHHHHHHHHHHHhCCCc-EEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCH-HHHhh
Confidence 55577764333333222233667 999998 7776655431 355643 333 22224
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+|+|+=. +-.. -+...++++++.+.++|+-.|......
T Consensus 79 adlViEa-i~E~--l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 79 ADLVIEA-IPED--LELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp ESEEEE--S-SS--HHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred hheehhh-cccc--HHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 5877633 2222 233568999999999898887765443
No 482
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=38.24 E-value=1.7e+02 Score=24.64 Aligned_cols=87 Identities=10% Similarity=0.135 Sum_probs=46.5
Q ss_pred eEEEEcCCc-c-HHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCC-------------CeeEEeCCCCCCCCcceEEEec
Q 041308 68 RLVDVGGSA-G-DCLRIILQKHCFICEGINFDL-PEVVAKAPSIP-------------EVTHIGGDMFKSIHVVDAIFMK 131 (244)
Q Consensus 68 ~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~-------------~i~~~~gd~~~~~p~~D~v~~~ 131 (244)
+|.=||+|. | .++..+++. +.+ ++++|. +..++..++.. ++.. ..|..+....+|+|++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~--g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN--GHD-VTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEALADADLILVA 78 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCE-EEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHHHhCCCEEEEe
Confidence 466677752 2 234444433 335 788887 55555443320 1111 11111112235888766
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.++.....+++.+...++|+..++.+-
T Consensus 79 -----v~~~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 79 -----VPSQALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred -----CCHHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 334556778888888888887766554
No 483
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=38.14 E-value=49 Score=29.26 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=43.8
Q ss_pred CcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCC-CCcceEEEeccccccCCHHHH
Q 041308 65 GVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 65 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~~ 142 (244)
.+.+|-=||+| .|.-....++.+ +.+ +++.|.+.. .......+ .++ +. ++.+|+|++..-+..-.+.+.
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~-G~~-V~~~dp~~~----~~~~~~~~--~~L-~ell~~sDiI~lh~PLt~~g~~~T 185 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEAL-GIK-TLLCDPPRA----DRGDEGDF--RSL-DELVQEADILTFHTPLFKDGPYKT 185 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCE-EEEECCccc----cccccccc--CCH-HHHHhhCCEEEEeCCCCCCccccc
Confidence 34788888886 355444444443 567 888985311 11111111 111 22 445688886655432111111
Q ss_pred HHHH-HHHHHHcCCCCEEEE
Q 041308 143 KLIM-ENYYKALLAGRKLIA 161 (244)
Q Consensus 143 ~~~l-~~~~~~L~pgG~lii 161 (244)
..++ ++..+.||||..|+-
T Consensus 186 ~~li~~~~l~~mk~gailIN 205 (378)
T PRK15438 186 LHLADEKLIRSLKPGAILIN 205 (378)
T ss_pred ccccCHHHHhcCCCCcEEEE
Confidence 2222 455567788766654
No 484
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=37.95 E-value=47 Score=28.36 Aligned_cols=85 Identities=19% Similarity=0.084 Sum_probs=40.1
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHH
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKL 144 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~ 144 (244)
+.++.=||.| .|.-....++. -+.+ +++.|.... .. ...+. ..++.+-++.+|+|++..-+. ++...-
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~-fgm~-V~~~d~~~~---~~-~~~~~--~~~l~ell~~sDvv~lh~Plt---~~T~~l 213 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQA-FGAK-VVYYSTSGK---NK-NEEYE--RVSLEELLKTSDIISIHAPLN---EKTKNL 213 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhh-cCCE-EEEECCCcc---cc-ccCce--eecHHHHhhcCCEEEEeCCCC---chhhcc
Confidence 3677777765 24443344433 3567 888886211 01 11122 223322256678887654432 111111
Q ss_pred HHHHHHHHcCCCCEEEE
Q 041308 145 IMENYYKALLAGRKLIA 161 (244)
Q Consensus 145 ~l~~~~~~L~pgG~lii 161 (244)
+=++..+.||||.+|+-
T Consensus 214 i~~~~~~~Mk~~a~lIN 230 (311)
T PRK08410 214 IAYKELKLLKDGAILIN 230 (311)
T ss_pred cCHHHHHhCCCCeEEEE
Confidence 22344455666666554
No 485
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=37.83 E-value=1e+02 Score=31.26 Aligned_cols=67 Identities=15% Similarity=0.077 Sum_probs=40.0
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCC------------eEEEeec-hHHHHh-CCCCCCeeEEeCCCCCC--C----Cc
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFIC------------EGINFDL-PEVVAK-APSIPEVTHIGGDMFKS--I----HV 124 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~------------~~~~~D~-~~~i~~-a~~~~~i~~~~gd~~~~--~----p~ 124 (244)
..+|+=|||| .|......+.+.|+.+ .+++.|. +.-.+. ++..++++.+..|+.+. + ..
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 4699999998 4766666665555532 2677886 443333 23335666677766443 2 23
Q ss_pred ceEEEecc
Q 041308 125 VDAIFMKW 132 (244)
Q Consensus 125 ~D~v~~~~ 132 (244)
.|+|++..
T Consensus 649 ~DaVIsal 656 (1042)
T PLN02819 649 VDVVISLL 656 (1042)
T ss_pred CCEEEECC
Confidence 58877553
No 486
>PRK05086 malate dehydrogenase; Provisional
Probab=37.71 E-value=2.1e+02 Score=24.38 Aligned_cols=96 Identities=15% Similarity=0.083 Sum_probs=43.9
Q ss_pred eEEEEcCCccHHHHHHH---HH-cCCCCeEEEeec-hHH----HHhCCCCCCeeEEe---CCCCCCCCcceEEEeccccc
Q 041308 68 RLVDVGGSAGDCLRIIL---QK-HCFICEGINFDL-PEV----VAKAPSIPEVTHIG---GDMFKSIHVVDAIFMKWVLT 135 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~---~~-~p~~~~~~~~D~-~~~----i~~a~~~~~i~~~~---gd~~~~~p~~D~v~~~~~lh 135 (244)
+|+=||+ +|..+..++ .. .+....++.+|. +.. ++.........+.. .|+.+.+...|+|++..-.-
T Consensus 2 KI~IIGA-sG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 2 KVAVLGA-AGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred EEEEECC-CCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 5677886 344444433 33 333332677786 321 11111011123221 23233355569888765542
Q ss_pred cCCH----HH---HHHHHHHHHHHcC---CCCEEEEecc
Q 041308 136 TWTD----DE---CKLIMENYYKALL---AGRKLIACEP 164 (244)
Q Consensus 136 ~~~~----~~---~~~~l~~~~~~L~---pgG~lii~d~ 164 (244)
+-+. +. ..++++++.+.++ |.+.++++..
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 3221 11 1235555655554 5677777543
No 487
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.30 E-value=64 Score=28.39 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=26.2
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEE---eec
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGIN---FDL 98 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---~D~ 98 (244)
..++++|||-|.++..+....+.-. ++. +|.
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~-~~l~vlvdR 217 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQN-VYLFVLVDR 217 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhcccc-EEEEEeecc
Confidence 7999999999999999999888766 555 665
No 488
>PLN02256 arogenate dehydrogenase
Probab=37.15 E-value=1.3e+02 Score=25.70 Aligned_cols=85 Identities=8% Similarity=-0.061 Sum_probs=44.9
Q ss_pred CcceEEEEcCC--ccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCC-CcceEEEeccccccCCHHH
Q 041308 65 GVKRLVDVGGS--AGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSI-HVVDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 65 ~~~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~-p~~D~v~~~~~lh~~~~~~ 141 (244)
...+|.=||+| .|.++..+.+. +.+ ++++|.....+.+++ ..+.. ..|..+.. ..+|+|++. .++..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~--G~~-V~~~d~~~~~~~a~~-~gv~~-~~~~~e~~~~~aDvVila-----vp~~~ 104 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQ--GHT-VLATSRSDYSDIAAE-LGVSF-FRDPDDFCEEHPDVVLLC-----TSILS 104 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC--CCE-EEEEECccHHHHHHH-cCCee-eCCHHHHhhCCCCEEEEe-----cCHHH
Confidence 34678888876 23344444432 345 888887332233332 22322 11221112 235888865 44455
Q ss_pred HHHHHHHH-HHHcCCCCEE
Q 041308 142 CKLIMENY-YKALLAGRKL 159 (244)
Q Consensus 142 ~~~~l~~~-~~~L~pgG~l 159 (244)
...+++++ ...++||..+
T Consensus 105 ~~~vl~~l~~~~l~~~~iv 123 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLF 123 (304)
T ss_pred HHHHHHhhhhhccCCCCEE
Confidence 66778887 5567787644
No 489
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=36.90 E-value=1.1e+02 Score=21.15 Aligned_cols=39 Identities=15% Similarity=-0.012 Sum_probs=27.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC------CCCeEEEeec-hHHH
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC------FICEGINFDL-PEVV 102 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p------~~~~~~~~D~-~~~i 102 (244)
..+.-+||=+|||.......-+...+ .++ +++.|. +.++
T Consensus 21 ~~~~~~iLl~G~gD~Rhvl~Tl~~~~~~~~~~~l~-~~l~D~~~~vl 66 (100)
T PF14737_consen 21 PDEDLNILLLGCGDLRHVLKTLASLPRSYDGRKLH-FTLNDINPEVL 66 (100)
T ss_pred CCCCceEEEecCccHHHHHHHHHhcccCcccceeE-EEEecCcHHHH
Confidence 45668999999999987666554433 356 777887 6554
No 490
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=36.85 E-value=2.4e+02 Score=24.06 Aligned_cols=86 Identities=8% Similarity=0.003 Sum_probs=46.0
Q ss_pred ceEEEEcCC-cc-HHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeE---------------E-eCCCCCCCCcceEE
Q 041308 67 KRLVDVGGS-AG-DCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTH---------------I-GGDMFKSIHVVDAI 128 (244)
Q Consensus 67 ~~vLDvG~G-~G-~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~---------------~-~gd~~~~~p~~D~v 128 (244)
.+|.=||+| -| .++..+++.. .+ ++++|.+...+..++. .+.+ . ..+. +....+|+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G--~~-V~~~~r~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAG--AD-VTLIGRARIGDELRAH-GLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcC--Cc-EEEEecHHHHHHHHhc-CceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 357778888 33 4555565543 45 8888884333333221 1111 0 1111 113345888
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
++.-- ..+...+++.+...++++..++..
T Consensus 78 il~vk-----~~~~~~~~~~l~~~~~~~~iii~~ 106 (341)
T PRK08229 78 LVTVK-----SAATADAAAALAGHARPGAVVVSF 106 (341)
T ss_pred EEEec-----CcchHHHHHHHHhhCCCCCEEEEe
Confidence 86532 233456778888888887766554
No 491
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=36.79 E-value=39 Score=29.17 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=48.3
Q ss_pred ceEEEEcCCccHHHHHHHHHcC--CCCeEEEeechHHHHhCCCCCCeeEEeCCCCCC-CCcceEEEeccccccCCHHHHH
Q 041308 67 KRLVDVGGSAGDCLRIILQKHC--FICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~~~ 143 (244)
.++-=+ |.|...+.++++.. +.+ +...|.... +...+..+..++. +++ +...|+|++..-+. ++...
T Consensus 147 ktvGIi--G~GrIG~avA~r~~~Fgm~-v~y~~~~~~-~~~~~~~~~~y~~---l~ell~~sDii~l~~Plt---~~T~h 216 (324)
T COG1052 147 KTLGII--GLGRIGQAVARRLKGFGMK-VLYYDRSPN-PEAEKELGARYVD---LDELLAESDIISLHCPLT---PETRH 216 (324)
T ss_pred CEEEEE--CCCHHHHHHHHHHhcCCCE-EEEECCCCC-hHHHhhcCceecc---HHHHHHhCCEEEEeCCCC---hHHhh
Confidence 455444 56677777776643 456 788887322 2233323344443 233 55579888765553 22222
Q ss_pred HHHHHHHHHcCCCCEEEEe
Q 041308 144 LIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 144 ~~l~~~~~~L~pgG~lii~ 162 (244)
-+=++..+.||||+.|+-.
T Consensus 217 Lin~~~l~~mk~ga~lVNt 235 (324)
T COG1052 217 LINAEELAKMKPGAILVNT 235 (324)
T ss_pred hcCHHHHHhCCCCeEEEEC
Confidence 2335667788998888754
No 492
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=36.55 E-value=84 Score=25.75 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=38.0
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec---h--HHHHhCCCCCCeeEEeCCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL---P--EVVAKAPSIPEVTHIGGDMF 119 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~---~--~~i~~a~~~~~i~~~~gd~~ 119 (244)
.+++++... --...-|.+||.|.|..++.++...- .+- ++-.|. | .++..|.. .+...+.+|.+
T Consensus 39 T~KIvK~A~-~~~~~~v~eIgPgpggitR~il~a~~~RL~-vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~L 108 (326)
T KOG0821|consen 39 TDKIVKKAG-NLTNAYVYEIGPGPGGITRSILNADVARLL-VVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVL 108 (326)
T ss_pred HHHHHHhcc-ccccceeEEecCCCCchhHHHHhcchhhee-eeeeccccChHHHHHhhcCC-cceEEeccccc
Confidence 445555543 33458899999999999999997642 333 444442 2 23333332 45555556654
No 493
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=36.53 E-value=56 Score=28.39 Aligned_cols=34 Identities=15% Similarity=-0.000 Sum_probs=25.5
Q ss_pred CCcceEEEEcCCccHHHH--HHHHHcCCCCeEEEeec
Q 041308 64 KGVKRLVDVGGSAGDCLR--IILQKHCFICEGINFDL 98 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~--~l~~~~p~~~~~~~~D~ 98 (244)
+..-.||-+|+|+|.++. .+.++.+.-+ +.++|.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~-vgIvep 72 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGS-VGIVEP 72 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCc-eEEecc
Confidence 345689999999999754 4677777777 766664
No 494
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=36.34 E-value=2.8e+02 Score=23.85 Aligned_cols=94 Identities=14% Similarity=0.006 Sum_probs=54.3
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCC-----CCC---C-CCc-ceEEEe
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGD-----MFK---S-IHV-VDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd-----~~~---~-~p~-~D~v~~ 130 (244)
.++..+||=.|+| .|..+..+++...-.+ +++++. +...+.+++..-..++..+ +.+ . .+. .|+++-
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~-vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid 263 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASR-IIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFE 263 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEE
Confidence 5667899888865 5666777777654226 888887 7777776654221222111 000 0 111 265552
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCC-CEEEEeccc
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAG-RKLIACEPV 165 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~~ 165 (244)
. .... ..+..+.+.+++| |+++++-..
T Consensus 264 ~-----~G~~---~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 264 C-----TGNI---DAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred C-----CCCh---HHHHHHHHHhhcCCCEEEEECcC
Confidence 2 2111 3567778889996 999987654
No 495
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=36.32 E-value=1.4e+02 Score=24.13 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=35.8
Q ss_pred eEEEEcCCccHHHHHHHHHcCC--CCeEEEeec-hHHHHh-CCCCCCeeEEeCCCCCC--CC-----cceEEEec
Q 041308 68 RLVDVGGSAGDCLRIILQKHCF--ICEGINFDL-PEVVAK-APSIPEVTHIGGDMFKS--IH-----VVDAIFMK 131 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-~~~i~~-a~~~~~i~~~~gd~~~~--~p-----~~D~v~~~ 131 (244)
+++=+||| .++..+++.... -. ++.+|. +..++. +.....+..+.+|..++ +. .+|+++..
T Consensus 2 ~iiIiG~G--~vG~~va~~L~~~g~~-Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAG--RVGRSVARELSEEGHN-VVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCc--HHHHHHHHHHHhCCCc-eEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 45667776 333333333322 24 888888 666655 44346778888998765 32 24776643
No 496
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=36.11 E-value=1.4e+02 Score=25.34 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=48.8
Q ss_pred ceEEEEcC--CccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCC-CCCeeEEe---CCCCCC----CCc-ceEEEeccc
Q 041308 67 KRLVDVGG--SAGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPS-IPEVTHIG---GDMFKS----IHV-VDAIFMKWV 133 (244)
Q Consensus 67 ~~vLDvG~--G~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~-~~~i~~~~---gd~~~~----~p~-~D~v~~~~~ 133 (244)
.+||=.|+ |.|..+..+++.. +. + +++++. ++-.+.+++ ..--.++. .++.+. .+. .|+|+-.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~-Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~-- 231 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSR-VVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDN-- 231 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCE-EEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEEC--
Confidence 78988884 6888888888875 44 5 777765 554444432 21111111 111111 122 3776632
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.... .+.++.+.|+++|+++.+-
T Consensus 232 ---~g~~----~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 232 ---VGGE----ISDTVISQMNENSHIILCG 254 (345)
T ss_pred ---CCcH----HHHHHHHHhccCCEEEEEe
Confidence 2222 2467788999999999764
No 497
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=35.94 E-value=29 Score=26.08 Aligned_cols=41 Identities=7% Similarity=-0.078 Sum_probs=26.6
Q ss_pred CCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEe
Q 041308 74 GSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIG 115 (244)
Q Consensus 74 ~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~ 115 (244)
||||.=..-.+.++|+++ +..+--+.....+|...+.++++
T Consensus 62 CGtGiG~siaANKv~GIR-aA~~~d~~~A~~ar~hNnaNVl~ 102 (141)
T PRK12613 62 DAYGAGPFMVATKLKGMV-AAEVSDERSAYMTRGHNNARMIT 102 (141)
T ss_pred cCCCHhHhhhhhcCCCeE-EEEECCHHHHHHHHHHcCCcEEE
Confidence 666665666788889988 65555466666667654444443
No 498
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=35.93 E-value=1.5e+02 Score=25.32 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=32.3
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechH
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPE 100 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~ 100 (244)
+..+.+.+.......+|+=+|||.-.+...+.+.+|+.+ +..+|-|.
T Consensus 261 v~~i~~~~~~~~~~~~Iil~GGGa~ll~~~l~~~f~~~~-i~~~~dp~ 307 (320)
T TIGR03739 261 VSTMMTWIGAPESIQNIVLVGGGAFLFKKAVKAAFPKHR-IVEVDEPM 307 (320)
T ss_pred HHHHHHhcccCCcccEEEEeCCcHHHHHHHHHHHCCCCe-eEecCCcH
Confidence 344444443123466899899998888888888999977 76666544
No 499
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=35.90 E-value=2.7e+02 Score=23.98 Aligned_cols=88 Identities=10% Similarity=0.089 Sum_probs=50.8
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKL 144 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~ 144 (244)
...++=++||++.....+.+. ... ++.+|- ..+-+..+..+.-..+.|++ |-. ++. -+++++.+
T Consensus 239 ~~~ilh~cg~~~~~~~~~~~~--~~~-~is~d~~~dl~~~k~~~g~~~~i~Gni-------~p~----ll~-gt~e~i~~ 303 (346)
T PRK00115 239 DVPVILFGKGAGELLEAMAET--GAD-VVGLDWTVDLAEARRRVGDKKALQGNL-------DPA----VLL-APPEAIEE 303 (346)
T ss_pred CCCEEEEcCCcHHHHHHHHhc--CCC-EEeeCCCCCHHHHHHHcCCCeEEEeCC-------Chh----Hhc-CCHHHHHH
Confidence 356887888888776666653 345 777776 33333222223324456777 221 221 35676777
Q ss_pred HHHHHHHHcCCCCEEEEecccCCC
Q 041308 145 IMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 145 ~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
-.+++.+.+.++|+++-..+.++.
T Consensus 304 ~~~~~i~~~~~~gfIl~~Gc~i~~ 327 (346)
T PRK00115 304 EVRAILDGGGGPGHIFNLGHGILP 327 (346)
T ss_pred HHHHHHHHhCCCCeeeecCCcCCC
Confidence 777787777667766655554443
No 500
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=35.53 E-value=2.6e+02 Score=24.36 Aligned_cols=91 Identities=16% Similarity=0.062 Sum_probs=50.2
Q ss_pred CCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHH-HHhCCCCCCeeEEe-CC---CCCCCCcceEEEecccccc
Q 041308 64 KGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEV-VAKAPSIPEVTHIG-GD---MFKSIHVVDAIFMKWVLTT 136 (244)
Q Consensus 64 ~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~-i~~a~~~~~i~~~~-gd---~~~~~p~~D~v~~~~~lh~ 136 (244)
++..+||=.|+| .|..+..+++.. +.+ +++++. ++- .+.+++..--.++. .+ +.+..+..|+++-.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~-Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~----- 249 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLR-VTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDT----- 249 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCe-EEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEEC-----
Confidence 356788888864 666777777765 456 777775 332 34444321111111 11 00001223766632
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
...+ ..+..+.+.+++||+++.+-.
T Consensus 250 ~G~~---~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 250 VSAE---HALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred CCcH---HHHHHHHHhhcCCCEEEEEcc
Confidence 1222 356778889999999998754
Done!