Query 041308
Match_columns 244
No_of_seqs 137 out of 1875
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:34:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 9.4E-40 3.2E-44 282.1 17.8 223 2-232 115-347 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 4.4E-38 1.5E-42 272.7 22.7 225 2-229 139-363 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 6.2E-38 2.1E-42 272.2 23.0 227 2-231 141-367 (368)
4 3lst_A CALO1 methyltransferase 100.0 9.7E-35 3.3E-39 250.3 20.0 220 2-230 123-347 (348)
5 1fp1_D Isoliquiritigenin 2'-O- 100.0 1.7E-34 5.9E-39 250.8 19.3 224 2-229 146-371 (372)
6 3i53_A O-methyltransferase; CO 100.0 1.6E-34 5.4E-39 247.3 16.3 216 2-230 108-331 (332)
7 1zg3_A Isoflavanone 4'-O-methy 100.0 5.1E-34 1.8E-38 246.6 19.1 222 2-229 127-357 (358)
8 3gwz_A MMCR; methyltransferase 100.0 2.4E-34 8.2E-39 249.7 16.6 219 2-230 141-368 (369)
9 1fp2_A Isoflavone O-methyltran 100.0 1.2E-33 4.2E-38 243.8 19.7 221 2-229 125-351 (352)
10 2ip2_A Probable phenazine-spec 100.0 6.1E-33 2.1E-37 237.6 17.2 217 3-230 109-333 (334)
11 1tw3_A COMT, carminomycin 4-O- 100.0 2.2E-31 7.7E-36 230.0 16.6 221 2-231 122-356 (360)
12 3dp7_A SAM-dependent methyltra 100.0 9.3E-32 3.2E-36 232.9 14.1 222 2-231 115-355 (363)
13 1qzz_A RDMB, aclacinomycin-10- 100.0 2.2E-31 7.5E-36 231.2 16.0 221 2-231 121-356 (374)
14 3mcz_A O-methyltransferase; ad 100.0 1.6E-30 5.5E-35 224.0 17.5 216 1-231 122-349 (352)
15 1x19_A CRTF-related protein; m 100.0 6.5E-30 2.2E-34 221.0 18.9 209 2-231 135-359 (359)
16 2r3s_A Uncharacterized protein 100.0 7.9E-30 2.7E-34 218.1 17.4 216 2-230 108-334 (335)
17 4gek_A TRNA (CMO5U34)-methyltr 99.9 1.6E-24 5.4E-29 179.3 16.4 193 34-231 35-257 (261)
18 3dtn_A Putative methyltransfer 99.9 2.5E-22 8.4E-27 163.0 16.7 193 37-231 13-226 (234)
19 3ou2_A SAM-dependent methyltra 99.9 1.5E-20 5.3E-25 150.3 15.5 164 53-222 34-208 (218)
20 3dlc_A Putative S-adenosyl-L-m 99.8 7.9E-22 2.7E-26 157.7 7.2 186 38-230 14-214 (219)
21 3dh0_A SAM dependent methyltra 99.8 1E-20 3.6E-25 151.7 12.9 158 53-232 26-194 (219)
22 3hnr_A Probable methyltransfer 99.8 6.1E-21 2.1E-25 153.2 11.0 169 54-230 35-211 (220)
23 3ujc_A Phosphoethanolamine N-m 99.8 2.4E-20 8.3E-25 153.6 14.4 157 53-221 44-208 (266)
24 1vl5_A Unknown conserved prote 99.8 1.4E-20 4.9E-25 155.0 12.0 167 41-220 14-191 (260)
25 3dli_A Methyltransferase; PSI- 99.8 2.4E-20 8.4E-25 151.9 12.6 166 38-220 14-185 (240)
26 3pfg_A N-methyltransferase; N, 99.8 8E-21 2.7E-25 156.8 8.6 166 64-233 49-251 (263)
27 3bus_A REBM, methyltransferase 99.8 1E-19 3.6E-24 150.7 12.1 158 53-221 50-218 (273)
28 1kpg_A CFA synthase;, cyclopro 99.8 2.8E-19 9.7E-24 149.3 14.4 164 53-221 53-230 (287)
29 1xtp_A LMAJ004091AAA; SGPP, st 99.8 1.2E-19 4.1E-24 148.6 11.9 149 54-220 83-239 (254)
30 3mgg_A Methyltransferase; NYSG 99.8 3.6E-20 1.2E-24 153.8 8.7 152 63-220 35-199 (276)
31 1xxl_A YCGJ protein; structura 99.8 1.1E-19 3.8E-24 148.0 11.1 156 52-220 9-175 (239)
32 3hem_A Cyclopropane-fatty-acyl 99.8 2.6E-19 8.8E-24 150.8 13.5 162 54-222 62-246 (302)
33 3vc1_A Geranyl diphosphate 2-C 99.8 4.1E-19 1.4E-23 150.4 13.7 161 47-220 99-270 (312)
34 1nkv_A Hypothetical protein YJ 99.8 3E-19 1E-23 146.5 12.0 153 53-219 25-187 (256)
35 3h2b_A SAM-dependent methyltra 99.8 1.2E-19 4.2E-24 143.8 9.3 145 66-228 42-192 (203)
36 2o57_A Putative sarcosine dime 99.8 3.1E-19 1.1E-23 149.8 11.9 153 54-220 68-235 (297)
37 3e23_A Uncharacterized protein 99.8 2E-19 6.9E-24 143.5 10.0 139 63-220 41-183 (211)
38 3ege_A Putative methyltransfer 99.8 6.2E-19 2.1E-23 145.5 13.2 156 53-223 23-182 (261)
39 2fk8_A Methoxy mycolic acid sy 99.8 7.6E-19 2.6E-23 148.9 14.0 164 53-221 79-256 (318)
40 3l8d_A Methyltransferase; stru 99.8 1.1E-18 3.6E-23 141.9 14.3 142 64-219 52-200 (242)
41 3f4k_A Putative methyltransfer 99.8 7E-19 2.4E-23 144.4 12.9 154 53-221 34-198 (257)
42 3gu3_A Methyltransferase; alph 99.8 3.4E-19 1.1E-23 148.9 10.9 162 56-220 13-191 (284)
43 1ve3_A Hypothetical protein PH 99.8 3.2E-19 1.1E-23 143.6 10.3 172 52-230 28-226 (227)
44 2ex4_A Adrenal gland protein A 99.8 3.9E-19 1.3E-23 144.9 10.9 139 64-220 78-226 (241)
45 1pjz_A Thiopurine S-methyltran 99.8 2.6E-19 8.8E-24 142.6 9.4 142 55-220 13-177 (203)
46 3kkz_A Uncharacterized protein 99.8 6.5E-19 2.2E-23 145.7 12.1 153 54-221 35-198 (267)
47 3bxo_A N,N-dimethyltransferase 99.8 2.6E-19 8.7E-24 145.3 9.5 164 64-231 39-239 (239)
48 2qe6_A Uncharacterized protein 99.8 6.1E-19 2.1E-23 146.8 11.6 141 64-215 76-238 (274)
49 3i9f_A Putative type 11 methyl 99.8 1.3E-19 4.3E-24 139.8 6.8 147 56-230 9-159 (170)
50 3lcc_A Putative methyl chlorid 99.8 5E-19 1.7E-23 143.6 10.3 143 54-221 57-209 (235)
51 3ccf_A Cyclopropane-fatty-acyl 99.8 9E-19 3.1E-23 145.8 11.6 168 49-224 42-215 (279)
52 3ocj_A Putative exported prote 99.8 6E-19 2.1E-23 148.8 9.9 168 63-231 116-304 (305)
53 2p7i_A Hypothetical protein; p 99.8 9.5E-19 3.2E-23 142.4 10.7 149 64-219 41-199 (250)
54 4fsd_A Arsenic methyltransfera 99.8 2E-18 6.7E-23 150.3 13.1 144 64-218 82-250 (383)
55 3sm3_A SAM-dependent methyltra 99.8 3.4E-18 1.1E-22 138.1 13.3 150 64-219 29-207 (235)
56 4htf_A S-adenosylmethionine-de 99.8 6.4E-19 2.2E-23 147.0 9.2 158 55-222 60-235 (285)
57 2p35_A Trans-aconitate 2-methy 99.8 2.2E-18 7.4E-23 141.5 12.0 155 53-214 22-185 (259)
58 3g5l_A Putative S-adenosylmeth 99.8 1.9E-18 6.6E-23 141.6 10.2 160 54-220 34-217 (253)
59 3jwh_A HEN1; methyltransferase 99.8 2.3E-18 8E-23 138.0 10.4 144 63-216 27-189 (217)
60 2yqz_A Hypothetical protein TT 99.8 3.1E-18 1.1E-22 140.8 11.1 149 63-220 37-197 (263)
61 3g2m_A PCZA361.24; SAM-depende 99.8 2.2E-18 7.7E-23 144.8 10.3 177 39-220 57-275 (299)
62 3bkw_A MLL3908 protein, S-aden 99.8 4.3E-18 1.5E-22 138.4 11.4 179 35-219 10-214 (243)
63 3ggd_A SAM-dependent methyltra 99.8 3.7E-18 1.3E-22 139.2 11.0 150 63-220 54-220 (245)
64 2xvm_A Tellurite resistance pr 99.8 6E-18 2.1E-22 133.3 11.7 143 54-219 22-173 (199)
65 4hg2_A Methyltransferase type 99.8 2.3E-18 8E-23 141.9 9.4 97 65-167 39-139 (257)
66 3e8s_A Putative SAM dependent 99.8 1.2E-18 4.2E-23 139.8 7.3 166 55-230 43-226 (227)
67 3g07_A 7SK snRNA methylphospha 99.7 2.4E-18 8.3E-23 144.4 9.2 146 64-219 45-269 (292)
68 3jwg_A HEN1, methyltransferase 99.7 3.8E-18 1.3E-22 136.8 9.5 143 64-216 28-189 (219)
69 1y8c_A S-adenosylmethionine-de 99.7 6.1E-18 2.1E-22 137.5 10.3 164 65-231 37-245 (246)
70 3cc8_A Putative methyltransfer 99.7 8E-18 2.7E-22 135.3 10.6 170 40-222 9-188 (230)
71 3bkx_A SAM-dependent methyltra 99.7 1.4E-17 4.8E-22 138.0 11.1 163 54-220 33-220 (275)
72 3cgg_A SAM-dependent methyltra 99.7 1.5E-17 5.1E-22 130.3 10.6 132 55-219 38-175 (195)
73 2a14_A Indolethylamine N-methy 99.7 2.1E-18 7.1E-23 142.6 5.6 152 63-231 53-260 (263)
74 3d2l_A SAM-dependent methyltra 99.7 1.6E-17 5.4E-22 135.0 10.8 101 54-161 25-135 (243)
75 2aot_A HMT, histamine N-methyl 99.7 2.9E-17 9.9E-22 137.7 10.6 144 64-216 51-218 (292)
76 2i62_A Nicotinamide N-methyltr 99.7 2E-17 6.9E-22 136.1 8.5 153 63-232 54-262 (265)
77 2p8j_A S-adenosylmethionine-de 99.7 1.3E-17 4.5E-22 132.5 6.7 152 63-217 21-181 (209)
78 3g5t_A Trans-aconitate 3-methy 99.7 6.9E-17 2.3E-21 135.7 10.4 121 38-164 11-150 (299)
79 2gb4_A Thiopurine S-methyltran 99.7 7.1E-17 2.4E-21 132.6 9.2 133 64-219 67-227 (252)
80 1vlm_A SAM-dependent methyltra 99.7 4.8E-17 1.6E-21 130.6 7.9 137 66-219 48-188 (219)
81 2zfu_A Nucleomethylin, cerebra 99.7 2.2E-16 7.4E-21 126.2 11.3 132 54-231 56-191 (215)
82 4e2x_A TCAB9; kijanose, tetron 99.7 7.1E-17 2.4E-21 141.7 8.9 152 51-220 94-254 (416)
83 3m70_A Tellurite resistance pr 99.7 1.2E-16 4.1E-21 133.3 9.7 142 54-218 110-259 (286)
84 3thr_A Glycine N-methyltransfe 99.7 4.9E-17 1.7E-21 136.0 7.2 125 36-164 26-176 (293)
85 2g72_A Phenylethanolamine N-me 99.7 3.8E-17 1.3E-21 136.6 6.2 139 65-220 71-257 (289)
86 1wzn_A SAM-dependent methyltra 99.7 8.9E-16 3E-20 125.5 14.2 106 53-162 30-144 (252)
87 1ri5_A MRNA capping enzyme; me 99.7 1E-16 3.4E-21 134.1 7.3 155 64-220 63-251 (298)
88 1fbn_A MJ fibrillarin homologu 99.7 1.3E-15 4.4E-20 123.3 13.5 147 57-231 67-228 (230)
89 3giw_A Protein of unknown func 99.7 5.7E-16 2E-20 127.6 11.1 141 65-215 78-243 (277)
90 4df3_A Fibrillarin-like rRNA/T 99.6 9.5E-16 3.2E-20 123.9 10.5 144 59-229 72-230 (233)
91 3e05_A Precorrin-6Y C5,15-meth 99.6 2.3E-15 7.8E-20 119.4 12.4 125 54-216 30-164 (204)
92 3mq2_A 16S rRNA methyltransfer 99.6 3.8E-16 1.3E-20 125.1 7.4 143 63-220 25-185 (218)
93 3p2e_A 16S rRNA methylase; met 99.6 1.2E-15 4.2E-20 123.2 10.3 147 64-222 23-188 (225)
94 3fzg_A 16S rRNA methylase; met 99.6 6.4E-16 2.2E-20 120.1 8.2 139 64-230 48-198 (200)
95 3ofk_A Nodulation protein S; N 99.6 4.3E-17 1.5E-21 130.3 1.6 99 63-164 49-155 (216)
96 2kw5_A SLR1183 protein; struct 99.6 2.1E-15 7E-20 119.3 10.8 143 53-220 21-172 (202)
97 3orh_A Guanidinoacetate N-meth 99.6 7.9E-17 2.7E-21 131.1 2.2 145 51-217 48-208 (236)
98 3q87_B N6 adenine specific DNA 99.6 3.7E-15 1.3E-19 115.1 10.9 118 65-220 23-150 (170)
99 3grz_A L11 mtase, ribosomal pr 99.6 1.4E-15 4.9E-20 120.6 8.3 131 64-231 59-197 (205)
100 3uwp_A Histone-lysine N-methyl 99.6 1.8E-15 6.3E-20 130.7 9.5 113 53-170 162-295 (438)
101 2gs9_A Hypothetical protein TT 99.6 4E-15 1.4E-19 118.4 10.8 137 56-210 29-171 (211)
102 2b3t_A Protein methyltransfera 99.6 9.3E-15 3.2E-19 121.4 11.8 135 64-230 108-275 (276)
103 1af7_A Chemotaxis receptor met 99.6 8.3E-15 2.8E-19 121.5 11.4 97 65-162 105-251 (274)
104 3id6_C Fibrillarin-like rRNA/T 99.6 2.1E-14 7E-19 116.2 12.7 143 63-231 74-231 (232)
105 1dus_A MJ0882; hypothetical pr 99.6 1.4E-14 4.8E-19 113.1 11.3 142 53-230 41-193 (194)
106 1zx0_A Guanidinoacetate N-meth 99.6 1E-15 3.6E-20 124.2 4.6 100 64-165 59-172 (236)
107 3iv6_A Putative Zn-dependent a 99.6 3E-15 1E-19 123.2 6.9 108 51-163 32-148 (261)
108 1nt2_A Fibrillarin-like PRE-rR 99.6 3E-14 1E-18 113.8 12.3 95 63-162 55-160 (210)
109 2vdw_A Vaccinia virus capping 99.6 5E-15 1.7E-19 124.7 8.1 154 65-220 48-247 (302)
110 2ipx_A RRNA 2'-O-methyltransfe 99.6 1.4E-14 4.7E-19 117.3 10.0 146 58-230 71-231 (233)
111 3bgv_A MRNA CAP guanine-N7 met 99.6 5.3E-15 1.8E-19 125.0 7.9 99 64-164 33-156 (313)
112 1yb2_A Hypothetical protein TA 99.6 5.8E-15 2E-19 122.6 7.9 126 54-218 100-236 (275)
113 1g8a_A Fibrillarin-like PRE-rR 99.5 9.5E-14 3.2E-18 111.8 14.3 146 57-230 66-226 (227)
114 4dzr_A Protein-(glutamine-N5) 99.5 1.2E-15 4.1E-20 121.2 2.9 145 56-231 21-205 (215)
115 3hm2_A Precorrin-6Y C5,15-meth 99.5 6E-15 2.1E-19 114.0 6.6 101 55-164 16-128 (178)
116 3mti_A RRNA methylase; SAM-dep 99.5 2.9E-14 9.9E-19 111.1 9.8 133 63-220 20-170 (185)
117 2pxx_A Uncharacterized protein 99.5 1.4E-14 4.7E-19 115.2 7.3 99 64-164 41-160 (215)
118 3njr_A Precorrin-6Y methylase; 99.5 5.5E-14 1.9E-18 111.7 10.1 124 55-219 46-180 (204)
119 3htx_A HEN1; HEN1, small RNA m 99.5 3.4E-14 1.2E-18 131.4 10.0 99 64-164 720-835 (950)
120 3evz_A Methyltransferase; NYSG 99.5 5.6E-14 1.9E-18 113.3 10.0 128 63-221 53-208 (230)
121 3mb5_A SAM-dependent methyltra 99.5 7.2E-14 2.5E-18 114.4 10.5 128 53-219 82-222 (255)
122 3hp7_A Hemolysin, putative; st 99.5 6.4E-14 2.2E-18 116.7 10.1 149 54-220 74-233 (291)
123 2h00_A Methyltransferase 10 do 99.5 1.1E-15 3.9E-20 125.3 -0.5 145 65-220 65-239 (254)
124 3m33_A Uncharacterized protein 99.5 9.4E-15 3.2E-19 117.8 4.5 117 64-222 47-170 (226)
125 2nxc_A L11 mtase, ribosomal pr 99.5 4.1E-14 1.4E-18 116.3 8.3 122 64-223 119-248 (254)
126 4dcm_A Ribosomal RNA large sub 99.5 4.6E-14 1.6E-18 122.2 8.8 107 55-163 213-334 (375)
127 3eey_A Putative rRNA methylase 99.5 3.7E-14 1.3E-18 111.6 7.5 135 63-220 20-174 (197)
128 3bwc_A Spermidine synthase; SA 99.5 4.1E-14 1.4E-18 119.3 8.1 140 64-230 94-257 (304)
129 1l3i_A Precorrin-6Y methyltran 99.5 3.2E-14 1.1E-18 110.8 6.7 121 56-215 25-156 (192)
130 1xdz_A Methyltransferase GIDB; 99.5 2.4E-14 8.1E-19 116.5 5.9 122 63-219 68-202 (240)
131 1yzh_A TRNA (guanine-N(7)-)-me 99.5 2E-13 6.8E-18 109.0 10.4 98 65-163 41-156 (214)
132 2pjd_A Ribosomal RNA small sub 99.5 3.1E-14 1.1E-18 121.9 5.7 110 53-164 185-304 (343)
133 3fpf_A Mtnas, putative unchara 99.5 1.3E-13 4.3E-18 114.9 9.1 95 63-164 120-223 (298)
134 1u2z_A Histone-lysine N-methyl 99.5 2.9E-13 1E-17 118.6 11.4 112 53-169 231-365 (433)
135 3dxy_A TRNA (guanine-N(7)-)-me 99.5 3.4E-14 1.2E-18 114.2 4.3 98 65-163 34-150 (218)
136 3opn_A Putative hemolysin; str 99.5 1E-13 3.4E-18 112.4 7.1 149 55-220 27-185 (232)
137 2ld4_A Anamorsin; methyltransf 99.4 1.2E-13 4.3E-18 106.8 7.1 114 63-218 10-133 (176)
138 2pwy_A TRNA (adenine-N(1)-)-me 99.4 3.2E-13 1.1E-17 110.5 9.1 126 54-218 86-223 (258)
139 3b3j_A Histone-arginine methyl 99.4 1.2E-13 3.9E-18 123.3 6.8 106 53-161 147-261 (480)
140 2fca_A TRNA (guanine-N(7)-)-me 99.4 2.4E-13 8.3E-18 108.7 7.6 98 65-163 38-153 (213)
141 1o9g_A RRNA methyltransferase; 99.4 3.2E-13 1.1E-17 110.4 8.2 108 56-165 43-216 (250)
142 2frn_A Hypothetical protein PH 99.4 5.7E-13 1.9E-17 110.8 9.6 121 63-215 123-253 (278)
143 3lbf_A Protein-L-isoaspartate 99.4 2.9E-13 1E-17 107.5 7.5 101 53-165 66-176 (210)
144 2avn_A Ubiquinone/menaquinone 99.4 1.4E-13 4.8E-18 113.2 5.7 147 65-222 54-216 (260)
145 3lcv_B Sisomicin-gentamicin re 99.4 2.2E-13 7.4E-18 110.7 6.6 139 64-227 131-279 (281)
146 3g89_A Ribosomal RNA small sub 99.4 1E-13 3.4E-18 113.6 4.7 122 63-219 78-212 (249)
147 3kr9_A SAM-dependent methyltra 99.4 1.2E-12 4.1E-17 105.1 10.9 118 63-217 13-141 (225)
148 2yxe_A Protein-L-isoaspartate 99.4 3.6E-13 1.2E-17 107.4 7.6 101 54-164 67-178 (215)
149 3tfw_A Putative O-methyltransf 99.4 1.1E-13 3.8E-18 113.2 4.7 98 63-166 61-173 (248)
150 2yxd_A Probable cobalt-precorr 99.4 3.8E-13 1.3E-17 103.9 7.3 120 55-216 26-154 (183)
151 3lpm_A Putative methyltransfer 99.4 6.5E-13 2.2E-17 109.2 9.0 124 63-219 46-201 (259)
152 1ej0_A FTSJ; methyltransferase 99.4 8.6E-13 2.9E-17 101.2 9.1 104 56-164 13-137 (180)
153 3ckk_A TRNA (guanine-N(7)-)-me 99.4 4.7E-13 1.6E-17 108.7 7.8 99 64-163 45-168 (235)
154 1o54_A SAM-dependent O-methylt 99.4 3.8E-13 1.3E-17 111.6 7.1 126 54-218 102-238 (277)
155 2plw_A Ribosomal RNA methyltra 99.4 2.6E-12 8.9E-17 101.2 11.3 103 56-163 13-154 (201)
156 3duw_A OMT, O-methyltransferas 99.4 4.1E-13 1.4E-17 107.7 6.6 99 63-167 56-171 (223)
157 3lec_A NADB-rossmann superfami 99.4 1.9E-12 6.7E-17 104.1 10.4 130 63-229 19-162 (230)
158 2y1w_A Histone-arginine methyl 99.4 2.9E-13 9.8E-18 116.2 5.8 106 54-162 40-154 (348)
159 1vbf_A 231AA long hypothetical 99.4 8.2E-13 2.8E-17 106.4 7.8 100 53-164 59-166 (231)
160 2bm8_A Cephalosporin hydroxyla 99.4 1.5E-12 5.2E-17 105.7 9.1 94 65-164 81-188 (236)
161 3p9n_A Possible methyltransfer 99.4 1.1E-12 3.9E-17 102.5 8.1 100 64-166 43-156 (189)
162 1dl5_A Protein-L-isoaspartate 99.4 1E-12 3.6E-17 111.2 8.2 102 53-164 64-176 (317)
163 1jg1_A PIMT;, protein-L-isoasp 99.4 7.9E-13 2.7E-17 107.1 7.1 101 53-164 80-190 (235)
164 3r3h_A O-methyltransferase, SA 99.4 7.6E-13 2.6E-17 107.9 6.6 99 64-168 59-175 (242)
165 3u81_A Catechol O-methyltransf 99.3 3.7E-13 1.3E-17 108.0 4.1 99 64-166 57-173 (221)
166 2ozv_A Hypothetical protein AT 99.3 1.2E-12 4.1E-17 107.8 7.1 100 63-163 34-170 (260)
167 3q7e_A Protein arginine N-meth 99.3 6.1E-13 2.1E-17 114.2 5.5 97 63-161 64-171 (349)
168 2vdv_E TRNA (guanine-N(7)-)-me 99.3 7.4E-13 2.5E-17 108.1 5.7 93 64-162 48-172 (246)
169 1jsx_A Glucose-inhibited divis 99.3 8.6E-13 3E-17 104.4 5.7 91 66-163 66-165 (207)
170 3dr5_A Putative O-methyltransf 99.3 1.9E-12 6.7E-17 104.0 7.8 144 65-232 56-214 (221)
171 3gnl_A Uncharacterized protein 99.3 5.5E-12 1.9E-16 102.3 10.3 130 63-229 19-162 (244)
172 3ntv_A MW1564 protein; rossman 99.3 8.8E-13 3E-17 106.7 5.4 98 63-166 69-179 (232)
173 3dmg_A Probable ribosomal RNA 99.3 2.7E-12 9.2E-17 111.3 8.0 97 65-164 233-341 (381)
174 2gpy_A O-methyltransferase; st 99.3 1.5E-12 5E-17 105.3 5.8 99 63-167 52-164 (233)
175 2esr_A Methyltransferase; stru 99.3 1.1E-12 3.7E-17 101.4 4.8 107 55-166 21-141 (177)
176 3adn_A Spermidine synthase; am 99.3 2E-12 6.8E-17 108.3 6.6 99 64-163 82-198 (294)
177 2fyt_A Protein arginine N-meth 99.3 3.5E-12 1.2E-16 109.0 8.2 102 54-160 54-168 (340)
178 3tr6_A O-methyltransferase; ce 99.3 8.4E-13 2.9E-17 105.9 3.7 98 64-167 63-178 (225)
179 3r0q_C Probable protein argini 99.3 1.8E-12 6.1E-17 112.3 6.0 108 55-165 54-171 (376)
180 3sso_A Methyltransferase; macr 99.3 2E-12 6.9E-17 111.5 6.1 94 65-165 216-326 (419)
181 2nyu_A Putative ribosomal RNA 99.3 8.6E-12 2.9E-16 97.7 9.1 103 57-164 14-146 (196)
182 2qm3_A Predicted methyltransfe 99.3 1.8E-11 6E-16 106.0 11.9 96 65-165 172-279 (373)
183 1nv8_A HEMK protein; class I a 99.3 3.1E-12 1.1E-16 106.7 6.8 94 65-161 123-247 (284)
184 3gjy_A Spermidine synthase; AP 99.3 1.5E-12 5.1E-17 109.6 4.8 97 67-164 91-201 (317)
185 1i9g_A Hypothetical protein RV 99.3 3E-12 1E-16 106.1 6.6 103 53-164 88-204 (280)
186 3dou_A Ribosomal RNA large sub 99.3 4.5E-12 1.5E-16 99.6 7.3 103 55-164 15-140 (191)
187 3frh_A 16S rRNA methylase; met 99.3 8.1E-12 2.8E-16 100.5 8.8 140 64-229 104-251 (253)
188 1p91_A Ribosomal RNA large sub 99.3 4E-12 1.4E-16 104.7 7.3 92 64-165 84-180 (269)
189 2fhp_A Methylase, putative; al 99.3 1E-12 3.4E-17 102.2 3.4 98 63-165 42-156 (187)
190 1r18_A Protein-L-isoaspartate( 99.3 4.5E-12 1.5E-16 102.0 6.2 93 63-164 82-195 (227)
191 2ift_A Putative methylase HI07 99.3 1.2E-12 4.1E-17 103.7 2.6 96 65-165 53-165 (201)
192 2oxt_A Nucleoside-2'-O-methylt 99.3 1.3E-11 4.5E-16 101.8 8.9 97 63-164 72-186 (265)
193 1ixk_A Methyltransferase; open 99.3 6.8E-12 2.3E-16 106.1 7.1 110 56-167 110-250 (315)
194 3c3p_A Methyltransferase; NP_9 99.2 1.7E-12 5.7E-17 103.3 2.7 97 65-167 56-164 (210)
195 1ws6_A Methyltransferase; stru 99.2 2.4E-12 8.2E-17 98.5 3.3 94 65-165 41-149 (171)
196 2wa2_A Non-structural protein 99.2 1.6E-11 5.5E-16 101.9 8.5 103 56-164 74-194 (276)
197 2p41_A Type II methyltransfera 99.2 2.8E-11 9.7E-16 101.8 10.1 96 63-162 80-190 (305)
198 1g6q_1 HnRNP arginine N-methyl 99.2 4.2E-12 1.4E-16 108.0 4.9 96 64-161 37-143 (328)
199 3tma_A Methyltransferase; thum 99.2 1.4E-11 4.8E-16 105.8 8.0 110 53-164 192-318 (354)
200 2pbf_A Protein-L-isoaspartate 99.2 1.5E-11 5.3E-16 98.7 7.7 93 63-164 78-194 (227)
201 1iy9_A Spermidine synthase; ro 99.2 1.2E-11 4E-16 102.7 7.0 97 65-162 75-188 (275)
202 1sui_A Caffeoyl-COA O-methyltr 99.2 4.5E-12 1.5E-16 103.6 4.1 97 64-166 78-193 (247)
203 2yvl_A TRMI protein, hypotheti 99.2 3.6E-11 1.2E-15 97.7 9.1 100 54-164 81-191 (248)
204 3gdh_A Trimethylguanosine synt 99.2 1.2E-13 4E-18 112.2 -5.8 134 65-221 78-221 (241)
205 2b25_A Hypothetical protein; s 99.2 1.9E-11 6.4E-16 104.3 7.3 102 54-164 95-220 (336)
206 1zq9_A Probable dimethyladenos 99.2 8.1E-12 2.8E-16 104.2 4.8 103 53-160 17-144 (285)
207 2hnk_A SAM-dependent O-methylt 99.2 6.8E-12 2.3E-16 101.8 4.2 98 63-166 58-184 (239)
208 1i1n_A Protein-L-isoaspartate 99.2 4.5E-11 1.5E-15 95.9 8.5 93 63-164 75-183 (226)
209 2i7c_A Spermidine synthase; tr 99.2 9.1E-12 3.1E-16 103.8 4.0 98 64-162 77-191 (283)
210 1mjf_A Spermidine synthase; sp 99.2 1.7E-11 5.7E-16 102.1 5.3 96 65-162 75-192 (281)
211 2avd_A Catechol-O-methyltransf 99.2 9.4E-12 3.2E-16 100.0 3.3 98 63-166 67-182 (229)
212 1xj5_A Spermidine synthase 1; 99.2 1E-11 3.5E-16 105.8 3.7 98 64-162 119-234 (334)
213 3cbg_A O-methyltransferase; cy 99.2 9.5E-12 3.2E-16 100.6 3.3 98 64-167 71-186 (232)
214 3c3y_A Pfomt, O-methyltransfer 99.2 1.4E-11 4.8E-16 100.0 4.2 97 64-166 69-184 (237)
215 1ne2_A Hypothetical protein TA 99.2 4.8E-11 1.7E-15 93.9 7.0 88 63-153 49-139 (200)
216 2cmg_A Spermidine synthase; tr 99.2 3.8E-11 1.3E-15 98.9 6.6 89 64-162 71-170 (262)
217 2o07_A Spermidine synthase; st 99.2 9.1E-12 3.1E-16 104.8 2.8 99 64-163 94-209 (304)
218 3a27_A TYW2, uncharacterized p 99.2 1.7E-11 5.9E-16 101.5 4.4 97 63-166 117-222 (272)
219 2fpo_A Methylase YHHF; structu 99.2 1.1E-11 3.8E-16 98.1 3.1 95 65-164 54-161 (202)
220 1uir_A Polyamine aminopropyltr 99.1 1.9E-11 6.7E-16 103.3 4.4 98 65-163 77-195 (314)
221 2pt6_A Spermidine synthase; tr 99.1 1.7E-11 5.7E-16 104.0 3.7 97 65-163 116-230 (321)
222 2b2c_A Spermidine synthase; be 99.1 1.2E-11 4E-16 104.6 2.8 97 65-163 108-222 (314)
223 3bzb_A Uncharacterized protein 99.1 1.2E-10 4.1E-15 96.9 8.6 96 63-162 77-204 (281)
224 3ajd_A Putative methyltransfer 99.1 3.6E-11 1.2E-15 99.7 5.1 112 56-169 75-217 (274)
225 1wy7_A Hypothetical protein PH 99.1 2.1E-10 7.2E-15 90.6 9.2 123 63-219 47-175 (207)
226 1inl_A Spermidine synthase; be 99.1 1.9E-11 6.5E-16 102.5 2.9 97 65-162 90-204 (296)
227 4hc4_A Protein arginine N-meth 99.1 8.1E-11 2.8E-15 101.5 6.4 94 66-161 84-187 (376)
228 2yxl_A PH0851 protein, 450AA l 99.1 1.6E-10 5.4E-15 102.4 7.7 111 56-168 251-394 (450)
229 2igt_A SAM dependent methyltra 99.1 2.6E-10 9E-15 97.0 8.3 97 65-164 153-273 (332)
230 2ih2_A Modification methylase 99.1 3.3E-10 1.1E-14 99.2 9.0 108 52-164 27-165 (421)
231 4azs_A Methyltransferase WBDD; 99.1 3.3E-11 1.1E-15 109.8 2.0 100 65-167 66-177 (569)
232 2xyq_A Putative 2'-O-methyl tr 99.0 7.2E-10 2.5E-14 92.3 9.6 92 63-164 61-172 (290)
233 1yub_A Ermam, rRNA methyltrans 99.0 7.6E-11 2.6E-15 96.1 3.4 109 52-164 17-146 (245)
234 2f8l_A Hypothetical protein LM 99.0 2E-10 7E-15 98.2 5.5 100 64-164 129-257 (344)
235 1qam_A ERMC' methyltransferase 99.0 3.7E-10 1.3E-14 92.0 6.4 104 52-159 18-142 (244)
236 3tm4_A TRNA (guanine N2-)-meth 99.0 5.2E-10 1.8E-14 96.7 7.6 122 63-220 215-353 (373)
237 3k6r_A Putative transferase PH 99.0 7.7E-10 2.6E-14 91.6 7.7 121 63-215 123-253 (278)
238 1sqg_A SUN protein, FMU protei 99.0 3.6E-10 1.2E-14 99.5 5.8 111 56-168 238-379 (429)
239 2h1r_A Dimethyladenosine trans 99.0 3.7E-10 1.3E-14 94.8 5.0 101 52-157 30-153 (299)
240 2frx_A Hypothetical protein YE 99.0 1.2E-09 4E-14 97.3 7.9 104 65-169 117-252 (479)
241 3m6w_A RRNA methylase; rRNA me 98.9 2.8E-10 9.4E-15 100.7 3.5 113 54-169 91-235 (464)
242 3m4x_A NOL1/NOP2/SUN family pr 98.9 3.7E-10 1.3E-14 99.7 4.2 128 40-169 81-240 (456)
243 2as0_A Hypothetical protein PH 98.9 7.6E-10 2.6E-14 96.4 3.5 99 65-165 217-337 (396)
244 1wxx_A TT1595, hypothetical pr 98.9 8E-10 2.7E-14 95.8 3.6 97 65-164 209-326 (382)
245 2yx1_A Hypothetical protein MJ 98.9 1.4E-09 4.7E-14 92.7 4.8 92 64-165 194-293 (336)
246 3b5i_A S-adenosyl-L-methionine 98.9 2.1E-08 7.2E-13 86.3 11.9 168 51-220 34-299 (374)
247 2b78_A Hypothetical protein SM 98.8 1.6E-09 5.4E-14 94.0 4.4 99 64-164 211-332 (385)
248 3k0b_A Predicted N6-adenine-sp 98.8 6.8E-09 2.3E-13 90.2 7.6 110 53-164 190-351 (393)
249 3ldg_A Putative uncharacterize 98.8 2E-08 6.7E-13 87.0 10.0 111 52-164 182-344 (384)
250 2okc_A Type I restriction enzy 98.8 2.1E-09 7.1E-14 95.0 3.7 110 53-164 160-308 (445)
251 3ldu_A Putative methylase; str 98.8 1.2E-08 4.2E-13 88.4 8.3 110 53-164 184-345 (385)
252 3c0k_A UPF0064 protein YCCW; P 98.8 3.1E-09 1.1E-13 92.6 3.9 98 64-164 219-340 (396)
253 4dmg_A Putative uncharacterize 98.8 6.7E-09 2.3E-13 90.2 5.9 99 64-165 213-328 (393)
254 4gqb_A Protein arginine N-meth 98.7 6.2E-09 2.1E-13 94.9 5.2 128 28-160 324-464 (637)
255 2qfm_A Spermine synthase; sper 98.7 4.2E-09 1.4E-13 89.8 3.2 98 64-163 187-314 (364)
256 3gru_A Dimethyladenosine trans 98.7 2.7E-08 9.2E-13 83.1 7.5 84 52-140 38-129 (295)
257 2jjq_A Uncharacterized RNA met 98.7 5.5E-08 1.9E-12 85.4 9.4 90 64-162 289-386 (425)
258 1qyr_A KSGA, high level kasuga 98.7 2.4E-08 8.1E-13 81.6 6.2 90 52-146 9-111 (252)
259 3ftd_A Dimethyladenosine trans 98.7 4.3E-08 1.5E-12 80.0 7.6 85 53-140 20-110 (249)
260 2efj_A 3,7-dimethylxanthine me 98.7 3.2E-07 1.1E-11 79.0 12.9 153 66-219 53-292 (384)
261 1uwv_A 23S rRNA (uracil-5-)-me 98.7 3.6E-08 1.2E-12 86.8 7.1 97 55-161 277-387 (433)
262 3v97_A Ribosomal RNA large sub 98.7 1.3E-08 4.6E-13 94.6 4.5 98 65-164 539-658 (703)
263 1m6e_X S-adenosyl-L-methionnin 98.6 2.5E-07 8.4E-12 79.1 11.9 155 64-219 50-280 (359)
264 3fut_A Dimethyladenosine trans 98.6 4.7E-08 1.6E-12 80.6 6.6 90 53-148 36-133 (271)
265 3o4f_A Spermidine synthase; am 98.6 6.6E-08 2.3E-12 80.3 7.5 97 64-162 82-197 (294)
266 2qy6_A UPF0209 protein YFCK; s 98.6 3.4E-08 1.2E-12 80.9 4.6 132 65-231 60-247 (257)
267 3uzu_A Ribosomal RNA small sub 98.6 2.3E-08 8E-13 82.9 3.3 67 53-121 31-102 (279)
268 3evf_A RNA-directed RNA polyme 98.6 2.3E-07 7.8E-12 75.8 8.9 105 55-161 65-182 (277)
269 3bt7_A TRNA (uracil-5-)-methyl 98.5 2.4E-08 8.1E-13 86.1 1.5 96 56-164 206-327 (369)
270 1rjd_A PPM1P, carboxy methyl t 98.5 5.8E-07 2E-11 76.3 10.0 144 65-212 97-281 (334)
271 3tqs_A Ribosomal RNA small sub 98.5 8.3E-08 2.8E-12 78.5 4.4 65 53-121 18-87 (255)
272 3ua3_A Protein arginine N-meth 98.5 7.1E-08 2.4E-12 88.2 3.4 125 28-160 379-531 (745)
273 3v97_A Ribosomal RNA large sub 98.4 4.5E-07 1.5E-11 84.4 8.3 110 53-164 179-348 (703)
274 1m6y_A S-adenosyl-methyltransf 98.4 1.5E-07 5.3E-12 78.7 4.7 79 52-132 14-106 (301)
275 2b9e_A NOL1/NOP2/SUN domain fa 98.4 5.4E-07 1.8E-11 75.7 7.9 110 56-168 94-239 (309)
276 2r6z_A UPF0341 protein in RSP 98.4 4E-07 1.4E-11 74.6 6.3 71 63-136 81-173 (258)
277 3gcz_A Polyprotein; flavivirus 98.4 4.5E-07 1.6E-11 74.1 5.6 108 54-163 80-201 (282)
278 2ar0_A M.ecoki, type I restric 98.3 4.5E-07 1.5E-11 81.9 5.0 109 53-163 158-312 (541)
279 2dul_A N(2),N(2)-dimethylguano 98.3 4.3E-07 1.5E-11 78.5 3.9 91 66-163 48-164 (378)
280 3axs_A Probable N(2),N(2)-dime 98.3 3E-07 1E-11 79.7 2.8 93 65-163 52-158 (392)
281 3eld_A Methyltransferase; flav 98.1 9.3E-06 3.2E-10 66.9 8.7 105 56-162 73-190 (300)
282 4auk_A Ribosomal RNA large sub 98.1 1.5E-05 5E-10 68.1 9.4 131 63-221 209-343 (375)
283 3s1s_A Restriction endonucleas 98.0 1.5E-05 5.1E-10 74.2 9.3 101 63-164 319-466 (878)
284 3c6k_A Spermine synthase; sper 98.0 2.4E-06 8.2E-11 73.1 3.7 96 65-162 205-330 (381)
285 2oyr_A UPF0341 protein YHIQ; a 98.0 1.3E-06 4.4E-11 71.5 1.4 97 54-157 76-194 (258)
286 3khk_A Type I restriction-modi 98.0 1.2E-06 4.2E-11 79.0 1.2 108 53-163 234-395 (544)
287 3iei_A Leucine carboxyl methyl 97.9 0.00025 8.6E-09 59.9 13.5 149 65-220 90-282 (334)
288 2px2_A Genome polyprotein [con 97.9 4.6E-05 1.6E-09 61.5 8.3 107 54-162 63-182 (269)
289 2uyo_A Hypothetical protein ML 97.9 1.7E-05 5.7E-10 66.6 5.8 144 65-214 102-274 (310)
290 3lkz_A Non-structural protein 97.8 0.00012 4.1E-09 60.1 9.8 105 54-161 84-202 (321)
291 3p8z_A Mtase, non-structural p 97.8 0.00012 4.2E-09 58.2 9.4 106 53-161 67-184 (267)
292 3lkd_A Type I restriction-modi 97.8 4.1E-05 1.4E-09 69.0 7.1 97 65-163 221-358 (542)
293 3ll7_A Putative methyltransfer 97.8 9.8E-06 3.4E-10 70.4 2.7 65 64-131 92-170 (410)
294 2vz8_A Fatty acid synthase; tr 97.7 1.1E-05 3.9E-10 84.1 3.0 142 65-218 1240-1394(2512)
295 2k4m_A TR8_protein, UPF0146 pr 97.7 6.2E-05 2.1E-09 55.5 5.4 83 64-164 34-122 (153)
296 1wg8_A Predicted S-adenosylmet 97.6 5.1E-05 1.8E-09 62.3 4.6 78 51-132 9-97 (285)
297 3cvo_A Methyltransferase-like 97.6 0.0002 6.8E-09 56.2 7.6 89 64-164 29-154 (202)
298 2zwa_A Leucine carboxyl methyl 97.6 0.00096 3.3E-08 62.0 13.2 148 65-219 107-309 (695)
299 2wk1_A NOVP; transferase, O-me 97.4 0.00049 1.7E-08 56.8 8.0 94 65-163 106-244 (282)
300 3vyw_A MNMC2; tRNA wobble urid 97.4 0.00035 1.2E-08 58.1 7.0 130 66-230 97-259 (308)
301 4fzv_A Putative methyltransfer 97.4 0.0002 6.8E-09 61.2 5.5 108 63-171 146-292 (359)
302 3tka_A Ribosomal RNA small sub 97.3 0.00049 1.7E-08 57.9 6.6 70 49-120 42-115 (347)
303 3ufb_A Type I restriction-modi 96.9 0.0027 9.1E-08 57.1 8.0 110 52-163 205-362 (530)
304 1i4w_A Mitochondrial replicati 96.8 0.00097 3.3E-08 56.7 4.3 55 65-120 58-116 (353)
305 3r24_A NSP16, 2'-O-methyl tran 96.6 0.0024 8.1E-08 52.5 5.2 92 63-162 107-216 (344)
306 2zig_A TTHA0409, putative modi 96.4 0.0016 5.4E-08 54.1 3.1 50 53-107 225-275 (297)
307 3tos_A CALS11; methyltransfera 95.1 0.021 7.2E-07 46.3 4.4 129 66-225 70-253 (257)
308 3ggo_A Prephenate dehydrogenas 93.7 0.21 7.1E-06 41.6 7.7 90 67-162 34-127 (314)
309 1g60_A Adenine-specific methyl 93.7 0.041 1.4E-06 44.5 3.3 51 52-107 201-252 (260)
310 3pvc_A TRNA 5-methylaminomethy 93.4 0.032 1.1E-06 51.7 2.3 121 65-220 58-234 (689)
311 3g7u_A Cytosine-specific methy 93.4 0.31 1.1E-05 41.7 8.3 97 67-167 3-122 (376)
312 1g55_A DNA cytosine methyltran 93.3 0.13 4.3E-06 43.5 5.8 73 66-138 2-82 (343)
313 3iht_A S-adenosyl-L-methionine 93.1 0.11 3.7E-06 38.5 4.3 97 66-165 41-149 (174)
314 3ps9_A TRNA 5-methylaminomethy 93.1 0.14 4.9E-06 47.1 6.2 121 65-220 66-242 (676)
315 3qv2_A 5-cytosine DNA methyltr 92.1 0.14 4.9E-06 42.9 4.4 125 66-216 10-157 (327)
316 2dph_A Formaldehyde dismutase; 91.7 0.39 1.3E-05 41.1 6.9 101 58-165 179-301 (398)
317 3l9w_A Glutathione-regulated p 91.3 0.7 2.4E-05 39.9 8.1 89 66-162 4-101 (413)
318 1f8f_A Benzyl alcohol dehydrog 91.0 0.61 2.1E-05 39.4 7.4 98 58-165 184-291 (371)
319 3b1f_A Putative prephenate deh 90.7 1.1 3.7E-05 36.4 8.4 88 67-160 7-98 (290)
320 1pl8_A Human sorbitol dehydrog 90.7 1.4 4.9E-05 36.9 9.4 92 63-164 169-274 (356)
321 2py6_A Methyltransferase FKBM; 90.2 0.41 1.4E-05 41.3 5.6 43 63-106 224-269 (409)
322 3s2e_A Zinc-containing alcohol 90.0 0.65 2.2E-05 38.7 6.6 90 63-164 164-264 (340)
323 2g5c_A Prephenate dehydrogenas 89.9 1.2 4E-05 35.9 7.9 89 68-162 3-95 (281)
324 3c85_A Putative glutathione-re 89.6 2.3 7.8E-05 31.7 8.9 90 66-162 39-138 (183)
325 2g1u_A Hypothetical protein TM 89.1 5 0.00017 29.0 11.9 91 64-161 17-116 (155)
326 2aef_A Calcium-gated potassium 88.7 3.7 0.00013 31.9 9.8 88 64-161 7-103 (234)
327 1lss_A TRK system potassium up 88.6 3.2 0.00011 29.0 8.6 86 67-161 5-100 (140)
328 3uko_A Alcohol dehydrogenase c 88.3 1.3 4.4E-05 37.5 7.3 100 56-165 185-297 (378)
329 3jv7_A ADH-A; dehydrogenase, n 88.2 0.81 2.8E-05 38.2 5.9 94 63-165 169-272 (345)
330 4dvj_A Putative zinc-dependent 88.2 1.2 4.1E-05 37.5 7.0 88 65-163 171-270 (363)
331 3fwz_A Inner membrane protein 88.2 3.8 0.00013 29.1 8.9 88 66-161 7-103 (140)
332 3two_A Mannitol dehydrogenase; 88.2 0.49 1.7E-05 39.6 4.5 90 63-164 174-266 (348)
333 2oo3_A Protein involved in cat 88.0 0.61 2.1E-05 38.1 4.8 97 66-167 92-202 (283)
334 1kol_A Formaldehyde dehydrogen 87.8 1.2 4E-05 38.0 6.8 96 63-164 183-301 (398)
335 1pqw_A Polyketide synthase; ro 87.6 1.5 5.2E-05 33.2 6.7 89 63-164 36-138 (198)
336 4ej6_A Putative zinc-binding d 87.4 1.5 5.2E-05 37.0 7.2 93 63-165 180-286 (370)
337 3llv_A Exopolyphosphatase-rela 87.4 3.7 0.00013 29.0 8.4 85 67-161 7-101 (141)
338 3l4b_C TRKA K+ channel protien 87.3 1.8 6.3E-05 33.4 7.1 86 68-161 2-97 (218)
339 4a2c_A Galactitol-1-phosphate 87.2 3.3 0.00011 34.2 9.1 95 63-166 158-263 (346)
340 1zkd_A DUF185; NESG, RPR58, st 86.4 0.71 2.4E-05 39.5 4.5 38 64-102 79-124 (387)
341 1e3j_A NADP(H)-dependent ketos 86.1 5.8 0.0002 33.0 10.0 92 63-164 166-272 (352)
342 1cdo_A Alcohol dehydrogenase; 85.3 3.2 0.00011 34.9 8.1 96 58-164 186-295 (374)
343 1id1_A Putative potassium chan 84.6 8.2 0.00028 27.6 9.2 87 67-161 4-103 (153)
344 2zig_A TTHA0409, putative modi 84.3 0.67 2.3E-05 38.0 3.3 54 109-162 20-96 (297)
345 2jhf_A Alcohol dehydrogenase E 84.2 4 0.00014 34.3 8.2 96 58-164 185-294 (374)
346 1p0f_A NADP-dependent alcohol 83.5 2.4 8.4E-05 35.6 6.6 97 58-164 185-294 (373)
347 3fpc_A NADP-dependent alcohol 83.2 0.95 3.2E-05 37.9 3.8 97 58-165 160-268 (352)
348 1e3i_A Alcohol dehydrogenase, 83.2 4.4 0.00015 34.1 8.0 97 57-164 188-298 (376)
349 1v3u_A Leukotriene B4 12- hydr 82.9 3.5 0.00012 34.0 7.2 89 63-164 143-245 (333)
350 3uog_A Alcohol dehydrogenase; 82.9 1.6 5.3E-05 36.8 5.1 95 58-165 183-289 (363)
351 2c0c_A Zinc binding alcohol de 82.9 3.2 0.00011 34.8 7.0 92 63-165 161-263 (362)
352 2dq4_A L-threonine 3-dehydroge 82.5 6.2 0.00021 32.6 8.6 91 59-164 160-263 (343)
353 4b7c_A Probable oxidoreductase 82.2 3.1 0.00011 34.3 6.6 93 58-164 143-249 (336)
354 1uuf_A YAHK, zinc-type alcohol 82.0 0.59 2E-05 39.6 2.1 92 63-164 192-289 (369)
355 2fzw_A Alcohol dehydrogenase c 81.9 3.6 0.00012 34.6 7.0 96 58-164 184-293 (373)
356 2j3h_A NADP-dependent oxidored 81.9 5.3 0.00018 33.0 8.0 93 58-164 149-256 (345)
357 3mag_A VP39; methylated adenin 81.8 5.4 0.00019 32.6 7.5 79 65-168 60-143 (307)
358 2c7p_A Modification methylase 81.7 1.5 5.1E-05 36.6 4.5 123 66-216 11-150 (327)
359 3ew7_A LMO0794 protein; Q8Y8U8 81.0 7 0.00024 29.5 7.9 93 68-164 2-103 (221)
360 1boo_A Protein (N-4 cytosine-s 80.9 0.88 3E-05 37.8 2.8 50 53-107 242-292 (323)
361 4eez_A Alcohol dehydrogenase 1 80.5 3 0.0001 34.6 6.0 93 63-164 161-264 (348)
362 3m6i_A L-arabinitol 4-dehydrog 80.5 6.8 0.00023 32.6 8.2 97 58-164 173-284 (363)
363 3h2s_A Putative NADH-flavin re 80.3 12 0.00041 28.3 9.1 93 68-163 2-104 (224)
364 3ip1_A Alcohol dehydrogenase, 79.4 4.4 0.00015 34.5 6.8 92 63-165 211-320 (404)
365 1rjw_A ADH-HT, alcohol dehydro 79.1 8 0.00028 31.9 8.2 90 63-164 162-262 (339)
366 2h6e_A ADH-4, D-arabinose 1-de 78.8 0.66 2.2E-05 38.7 1.3 92 63-164 169-270 (344)
367 3ius_A Uncharacterized conserv 78.1 15 0.0005 29.1 9.3 93 67-163 6-102 (286)
368 3gms_A Putative NADPH:quinone 78.0 2.3 7.7E-05 35.3 4.4 98 56-165 136-245 (340)
369 1jvb_A NAD(H)-dependent alcoho 77.5 2.5 8.4E-05 35.2 4.5 93 63-164 168-272 (347)
370 3goh_A Alcohol dehydrogenase, 77.4 1.1 3.9E-05 36.7 2.4 92 58-163 136-229 (315)
371 2hcy_A Alcohol dehydrogenase 1 77.0 2.9 0.0001 34.7 4.8 90 63-164 167-270 (347)
372 1lnq_A MTHK channels, potassiu 76.6 15 0.00051 30.2 9.1 86 66-161 115-209 (336)
373 3dmg_A Probable ribosomal RNA 76.6 2.3 7.8E-05 36.2 4.1 103 52-163 34-139 (381)
374 2d8a_A PH0655, probable L-thre 76.4 9.8 0.00033 31.5 8.0 93 58-164 162-268 (348)
375 3d1l_A Putative NADP oxidoredu 76.0 10 0.00035 29.9 7.7 91 67-165 11-104 (266)
376 4eye_A Probable oxidoreductase 75.0 2.6 8.9E-05 35.0 4.0 95 58-164 153-258 (342)
377 4h0n_A DNMT2; SAH binding, tra 74.6 1.9 6.4E-05 36.1 3.0 125 67-216 4-146 (333)
378 1boo_A Protein (N-4 cytosine-s 74.6 2 6.7E-05 35.7 3.1 55 109-163 13-84 (323)
379 2f1k_A Prephenate dehydrogenas 74.4 10 0.00035 30.1 7.4 85 68-161 2-89 (279)
380 3g79_A NDP-N-acetyl-D-galactos 73.9 27 0.00093 30.6 10.3 98 66-168 18-151 (478)
381 4f3n_A Uncharacterized ACR, CO 73.7 2.8 9.5E-05 36.4 3.8 57 33-98 113-174 (432)
382 2o3j_A UDP-glucose 6-dehydroge 73.5 8.3 0.00028 33.8 7.0 92 67-160 10-132 (481)
383 3qwb_A Probable quinone oxidor 72.7 7 0.00024 32.2 6.1 90 63-164 146-248 (334)
384 1vpt_A VP39; RNA CAP, poly(A) 72.5 13 0.00046 30.7 7.4 79 66-168 76-158 (348)
385 4e2x_A TCAB9; kijanose, tetron 72.0 10 0.00035 32.2 7.1 87 65-162 318-409 (416)
386 3tri_A Pyrroline-5-carboxylate 71.9 5.1 0.00017 32.4 4.9 87 67-160 4-95 (280)
387 3jyn_A Quinone oxidoreductase; 71.1 3.5 0.00012 33.9 3.8 98 56-165 132-241 (325)
388 1vj0_A Alcohol dehydrogenase, 71.0 6 0.0002 33.4 5.3 94 63-165 193-300 (380)
389 1eg2_A Modification methylase 70.4 3 0.0001 34.6 3.2 50 53-107 232-285 (319)
390 4dcm_A Ribosomal RNA large sub 70.4 11 0.00039 31.7 7.0 91 65-164 38-137 (375)
391 1yb5_A Quinone oxidoreductase; 70.4 8.5 0.00029 32.0 6.1 89 63-164 168-270 (351)
392 1piw_A Hypothetical zinc-type 70.3 1.2 4.3E-05 37.3 0.9 94 63-164 177-277 (360)
393 3e48_A Putative nucleoside-dip 70.1 15 0.00052 29.0 7.5 93 69-165 3-107 (289)
394 2b5w_A Glucose dehydrogenase; 70.0 7 0.00024 32.5 5.5 87 67-165 174-275 (357)
395 3c24_A Putative oxidoreductase 69.6 8.5 0.00029 30.9 5.8 84 67-161 12-99 (286)
396 1iz0_A Quinone oxidoreductase; 69.4 1.1 3.7E-05 36.6 0.3 90 63-164 123-219 (302)
397 3me5_A Cytosine-specific methy 68.8 4.5 0.00015 35.6 4.2 71 66-138 88-183 (482)
398 2eih_A Alcohol dehydrogenase; 68.5 14 0.00049 30.4 7.1 90 63-165 164-267 (343)
399 3gg2_A Sugar dehydrogenase, UD 66.4 9.5 0.00033 33.2 5.8 96 67-167 3-125 (450)
400 3fbg_A Putative arginate lyase 66.1 9.5 0.00032 31.6 5.5 87 65-163 150-248 (346)
401 4dup_A Quinone oxidoreductase; 65.6 6.2 0.00021 32.9 4.3 96 58-165 161-267 (353)
402 3pid_A UDP-glucose 6-dehydroge 64.1 14 0.00048 32.0 6.3 92 66-163 36-153 (432)
403 2hwk_A Helicase NSP2; rossman 63.5 2.8 9.5E-05 34.2 1.6 82 82-164 157-255 (320)
404 3nx4_A Putative oxidoreductase 63.2 8.4 0.00029 31.4 4.6 86 68-164 149-242 (324)
405 2ew2_A 2-dehydropantoate 2-red 63.1 31 0.0011 27.5 8.1 88 67-163 4-108 (316)
406 3ulk_A Ketol-acid reductoisome 63.1 4.5 0.00015 35.3 2.9 90 66-164 37-133 (491)
407 2rir_A Dipicolinate synthase, 63.0 8.9 0.0003 31.2 4.7 87 66-163 157-246 (300)
408 3ubt_Y Modification methylase 62.9 4.7 0.00016 33.2 3.0 121 68-215 2-139 (331)
409 2j8z_A Quinone oxidoreductase; 62.8 18 0.00063 29.9 6.7 90 63-165 160-263 (354)
410 1qor_A Quinone oxidoreductase; 62.7 9.2 0.00031 31.3 4.8 90 63-165 138-241 (327)
411 1x13_A NAD(P) transhydrogenase 62.6 2.5 8.7E-05 36.2 1.3 39 66-106 172-212 (401)
412 3d4o_A Dipicolinate synthase s 62.4 12 0.0004 30.3 5.3 87 66-163 155-244 (293)
413 2zb4_A Prostaglandin reductase 61.8 20 0.0007 29.6 6.8 89 63-164 156-261 (357)
414 3r6d_A NAD-dependent epimerase 61.4 49 0.0017 24.8 10.1 135 68-218 7-154 (221)
415 3ce6_A Adenosylhomocysteinase; 61.2 9.8 0.00034 33.6 4.9 88 64-164 272-362 (494)
416 3tqh_A Quinone oxidoreductase; 61.2 13 0.00045 30.3 5.5 94 58-163 146-245 (321)
417 4e12_A Diketoreductase; oxidor 59.9 10 0.00034 30.5 4.4 88 67-161 5-119 (283)
418 3krt_A Crotonyl COA reductase; 59.5 17 0.00057 31.4 6.1 91 63-164 226-345 (456)
419 2hmt_A YUAA protein; RCK, KTN, 59.5 39 0.0013 23.1 10.1 86 67-161 7-102 (144)
420 2y0c_A BCEC, UDP-glucose dehyd 59.5 18 0.00061 31.7 6.3 97 65-166 7-130 (478)
421 1ej6_A Lambda2; icosahedral, n 58.6 8 0.00027 37.3 3.9 89 64-156 820-917 (1289)
422 4g65_A TRK system potassium up 58.5 19 0.00065 31.3 6.2 88 65-160 2-99 (461)
423 2qrv_A DNA (cytosine-5)-methyl 57.8 7.7 0.00026 31.7 3.4 103 64-167 14-143 (295)
424 3ic5_A Putative saccharopine d 57.6 23 0.0008 23.4 5.5 62 67-132 6-77 (118)
425 2i6t_A Ubiquitin-conjugating e 57.4 24 0.00082 28.8 6.3 96 65-164 13-126 (303)
426 3p2y_A Alanine dehydrogenase/p 56.8 3 0.0001 35.5 0.8 93 65-163 183-302 (381)
427 1zcj_A Peroxisomal bifunctiona 56.3 65 0.0022 27.9 9.3 89 65-161 36-148 (463)
428 1yqd_A Sinapyl alcohol dehydro 56.2 17 0.00059 30.3 5.4 90 63-164 184-283 (366)
429 3ghy_A Ketopantoate reductase 56.0 5.4 0.00018 33.0 2.2 89 67-165 4-106 (335)
430 3abi_A Putative uncharacterize 55.0 55 0.0019 27.1 8.4 60 67-131 17-84 (365)
431 1mv8_A GMD, GDP-mannose 6-dehy 54.9 19 0.00066 30.9 5.6 92 68-163 2-122 (436)
432 1wg8_A Predicted S-adenosylmet 54.7 6 0.00021 32.2 2.2 25 140-164 210-234 (285)
433 3hn7_A UDP-N-acetylmuramate-L- 54.6 74 0.0025 28.0 9.5 127 66-214 19-152 (524)
434 3tka_A Ribosomal RNA small sub 54.3 6.1 0.00021 33.1 2.2 24 141-164 252-275 (347)
435 1l7d_A Nicotinamide nucleotide 54.3 4.2 0.00015 34.5 1.3 39 65-105 171-211 (384)
436 3gaz_A Alcohol dehydrogenase s 54.0 18 0.00061 29.9 5.1 92 58-164 144-247 (343)
437 1tt7_A YHFP; alcohol dehydroge 53.3 16 0.00054 29.9 4.6 91 63-164 147-248 (330)
438 1xa0_A Putative NADPH dependen 52.7 17 0.0006 29.6 4.8 91 63-164 146-247 (328)
439 4ezb_A Uncharacterized conserv 52.5 29 0.001 28.3 6.2 86 67-163 25-121 (317)
440 2cf5_A Atccad5, CAD, cinnamyl 52.5 17 0.0006 30.1 4.8 92 63-164 177-276 (357)
441 2km1_A Protein DRE2; yeast, an 52.1 6.7 0.00023 28.2 1.8 19 143-161 78-96 (136)
442 2vn8_A Reticulon-4-interacting 51.9 22 0.00075 29.7 5.4 92 63-163 181-280 (375)
443 3ado_A Lambda-crystallin; L-gu 51.9 14 0.00049 30.5 4.1 97 65-166 5-126 (319)
444 2q3e_A UDP-glucose 6-dehydroge 51.1 30 0.001 30.1 6.3 92 67-160 6-128 (467)
445 2vvp_A Ribose-5-phosphate isom 50.9 9.3 0.00032 28.3 2.5 43 71-114 66-108 (162)
446 3dfz_A SIRC, precorrin-2 dehyd 50.9 24 0.00081 27.5 5.0 62 66-131 31-98 (223)
447 1np3_A Ketol-acid reductoisome 50.3 14 0.00047 30.6 3.8 84 67-161 17-105 (338)
448 3g0o_A 3-hydroxyisobutyrate de 49.8 28 0.00094 28.1 5.6 87 67-162 8-101 (303)
449 3zwc_A Peroxisomal bifunctiona 49.8 37 0.0013 31.6 6.9 96 65-166 315-432 (742)
450 3vrd_B FCCB subunit, flavocyto 49.1 14 0.00049 30.9 3.8 32 66-98 2-35 (401)
451 3he8_A Ribose-5-phosphate isom 48.6 11 0.00036 27.6 2.4 42 72-114 63-104 (149)
452 1eg2_A Modification methylase 48.5 8.6 0.00029 31.8 2.2 23 141-163 84-106 (319)
453 3dhn_A NAD-dependent epimerase 48.3 34 0.0012 25.7 5.7 62 67-132 5-75 (227)
454 1o1x_A Ribose-5-phosphate isom 48.1 9.4 0.00032 28.1 2.1 42 71-113 74-115 (155)
455 3s5p_A Ribose 5-phosphate isom 48.0 11 0.00039 27.9 2.6 43 71-114 83-125 (166)
456 2cdc_A Glucose dehydrogenase g 47.9 19 0.00064 30.0 4.3 88 66-164 181-279 (366)
457 1bg6_A N-(1-D-carboxylethyl)-L 47.9 20 0.00069 29.5 4.5 88 67-162 5-108 (359)
458 4a0s_A Octenoyl-COA reductase/ 47.3 58 0.002 27.8 7.5 91 63-164 218-337 (447)
459 2cvz_A Dehydrogenase, 3-hydrox 47.2 27 0.00093 27.6 5.1 82 68-162 3-89 (289)
460 4gbj_A 6-phosphogluconate dehy 47.1 70 0.0024 25.8 7.6 86 68-163 7-97 (297)
461 2hiy_A Hypothetical protein; C 46.2 17 0.00057 27.5 3.4 36 194-229 19-54 (183)
462 2vhw_A Alanine dehydrogenase; 46.0 0.88 3E-05 38.8 -4.3 94 66-163 168-268 (377)
463 3gqv_A Enoyl reductase; medium 45.5 62 0.0021 26.8 7.2 91 64-164 163-264 (371)
464 3oig_A Enoyl-[acyl-carrier-pro 45.5 88 0.003 24.2 7.8 97 66-165 7-149 (266)
465 3ph3_A Ribose-5-phosphate isom 45.4 11 0.00037 28.1 2.1 42 71-113 82-123 (169)
466 3k96_A Glycerol-3-phosphate de 45.2 31 0.0011 28.8 5.3 89 67-164 30-134 (356)
467 4a7p_A UDP-glucose dehydrogena 45.2 46 0.0016 28.8 6.5 94 66-163 8-129 (446)
468 3swr_A DNA (cytosine-5)-methyl 44.8 20 0.00067 34.6 4.3 126 65-215 539-698 (1002)
469 3ono_A Ribose/galactose isomer 43.5 10 0.00034 29.5 1.7 43 70-113 70-112 (214)
470 2ppw_A Conserved domain protei 43.0 9.1 0.00031 29.8 1.4 42 70-112 71-112 (216)
471 3c7a_A Octopine dehydrogenase; 43.0 34 0.0011 28.8 5.2 32 125-161 83-114 (404)
472 4g65_A TRK system potassium up 42.8 57 0.0019 28.3 6.7 90 64-161 233-332 (461)
473 3c5y_A Ribose/galactose isomer 42.7 11 0.00037 29.6 1.8 39 71-110 88-126 (231)
474 2vvr_A Ribose-5-phosphate isom 42.6 8.5 0.00029 28.1 1.2 37 71-108 63-99 (149)
475 3ktd_A Prephenate dehydrogenas 42.5 23 0.00079 29.5 4.0 83 66-159 8-97 (341)
476 4id9_A Short-chain dehydrogena 42.4 54 0.0019 26.5 6.3 64 66-138 19-91 (347)
477 3k7p_A Ribose 5-phosphate isom 42.2 15 0.00052 27.6 2.5 42 72-114 87-128 (179)
478 2zqz_A L-LDH, L-lactate dehydr 42.0 1.1E+02 0.0038 25.0 8.1 98 64-162 7-124 (326)
479 2jl1_A Triphenylmethane reduct 41.8 76 0.0026 24.7 7.0 90 72-164 5-107 (287)
480 3g17_A Similar to 2-dehydropan 41.3 21 0.00071 28.7 3.5 91 67-166 3-99 (294)
481 1zsy_A Mitochondrial 2-enoyl t 41.0 56 0.0019 26.9 6.2 91 63-163 165-270 (357)
482 1ez4_A Lactate dehydrogenase; 40.9 1.2E+02 0.004 24.7 8.1 97 65-162 4-120 (318)
483 4gx0_A TRKA domain protein; me 40.5 83 0.0028 27.8 7.6 83 67-162 349-441 (565)
484 3iyl_W VP1; non-enveloped viru 40.2 40 0.0014 32.9 5.5 87 67-157 829-925 (1299)
485 3sgw_A Ribose 5-phosphate isom 39.7 17 0.0006 27.4 2.5 41 72-113 95-135 (184)
486 2eez_A Alanine dehydrogenase; 39.5 11 0.00037 31.7 1.5 93 66-163 166-266 (369)
487 3vtf_A UDP-glucose 6-dehydroge 39.4 31 0.0011 29.9 4.4 100 66-169 21-149 (444)
488 1yj8_A Glycerol-3-phosphate de 39.4 26 0.00088 29.3 3.9 90 67-163 22-141 (375)
489 1t2d_A LDH-P, L-lactate dehydr 39.0 61 0.0021 26.5 6.0 94 66-162 4-125 (322)
490 3dqp_A Oxidoreductase YLBE; al 38.6 50 0.0017 24.7 5.2 91 68-165 2-107 (219)
491 1m6y_A S-adenosyl-methyltransf 38.1 10 0.00035 31.0 1.1 24 141-164 223-246 (301)
492 1hyh_A L-hicdh, L-2-hydroxyiso 37.3 94 0.0032 25.0 6.9 92 68-162 3-121 (309)
493 1yqg_A Pyrroline-5-carboxylate 37.1 46 0.0016 25.9 4.9 60 68-131 2-64 (263)
494 3eag_A UDP-N-acetylmuramate:L- 37.0 1.7E+02 0.0057 23.7 8.6 126 66-213 4-137 (326)
495 2bll_A Protein YFBG; decarboxy 37.0 53 0.0018 26.4 5.4 62 68-131 2-74 (345)
496 2izz_A Pyrroline-5-carboxylate 36.8 18 0.0006 29.7 2.4 88 67-162 23-117 (322)
497 3hwr_A 2-dehydropantoate 2-red 36.4 49 0.0017 26.9 5.0 91 65-165 18-122 (318)
498 4gx0_A TRKA domain protein; me 36.4 80 0.0028 27.9 6.8 86 66-161 127-222 (565)
499 2qyt_A 2-dehydropantoate 2-red 36.4 13 0.00045 30.0 1.5 90 67-162 9-116 (317)
500 1x0v_A GPD-C, GPDH-C, glycerol 36.3 20 0.0007 29.5 2.7 91 67-164 9-125 (354)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=9.4e-40 Score=282.07 Aligned_cols=223 Identities=20% Similarity=0.297 Sum_probs=201.3
Q ss_pred CChhhHHHHHhCCCCCchhhhcCC---CcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGE---PAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGD 78 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~---~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~ 78 (244)
.+|.+|.+++++|+ +++...+|. ++|+++..+++....|+++|........+.+++.++ +++..+|||||||+|.
T Consensus 115 ~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~ 192 (353)
T 4a6d_A 115 RCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGA 192 (353)
T ss_dssp HHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSH
T ss_pred HHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCH
Confidence 46999999999999 889888874 467888899999999999999988888888999999 9999999999999999
Q ss_pred HHHHHHHHcCCCCeEEEeechHHHHhCCCC------CCeeEEeCCCCCC-CCcceEEEeccccccCCHHHHHHHHHHHHH
Q 041308 79 CLRIILQKHCFICEGINFDLPEVVAKAPSI------PEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDECKLIMENYYK 151 (244)
Q Consensus 79 ~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~------~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~ 151 (244)
++..+++++|+++ ++++|+|.+++.+++. +||+++.+|++++ .|.+|+|++.++||+|+|+++.++|+++++
T Consensus 193 ~~~~l~~~~p~~~-~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~ 271 (353)
T 4a6d_A 193 LAKECMSLYPGCK-ITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYH 271 (353)
T ss_dssp HHHHHHHHCSSCE-EEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCce-eEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHh
Confidence 9999999999999 9999999999888742 7999999999987 666899999999999999999999999999
Q ss_pred HcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecCc
Q 041308 152 ALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSN 231 (244)
Q Consensus 152 ~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~ 231 (244)
+|+|||+++|+|.+.+++...+.. ...+|+.|+. ..+|++||.+||++++++|||+.+++........+++++|.
T Consensus 272 al~pgg~lli~e~~~~~~~~~~~~---~~~~dl~ml~--~~~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArKg 346 (353)
T 4a6d_A 272 TCKPGGGILVIESLLDEDRRGPLL---TQLYSLNMLV--QTEGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARKG 346 (353)
T ss_dssp HCCTTCEEEEEECCCCTTSCCCHH---HHHHHHHHHH--SSSCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEECC
T ss_pred hCCCCCEEEEEEeeeCCCCCCCHH---HHHHHHHHHH--hCCCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEec
Confidence 999999999999998876544433 3567888887 77899999999999999999999999999888999999985
Q ss_pred h
Q 041308 232 F 232 (244)
Q Consensus 232 ~ 232 (244)
=
T Consensus 347 t 347 (353)
T 4a6d_A 347 T 347 (353)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=4.4e-38 Score=272.67 Aligned_cols=225 Identities=32% Similarity=0.638 Sum_probs=200.1
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
.+|.+|.+++|+|+ ++++..+|.++|+++..+++..+.|+++|..+.....+.+++.++.+++..+|||||||+|.++.
T Consensus 139 ~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~ 217 (364)
T 3p9c_A 139 ESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVA 217 (364)
T ss_dssp GGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHH
T ss_pred HHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHH
Confidence 57999999999999 99999999999999999999999999999998888788888888657888999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.+++++|+++ ++++|+|.+++.+++.++++++.+|+++++|.+|+|++.+++|+|+++++.++|++++++|||||+++|
T Consensus 218 ~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i 296 (364)
T 3p9c_A 218 AIAAHYPTIK-GVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVL 296 (364)
T ss_dssp HHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHCCCCe-EEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 9999999999 999999999999998899999999999988877999999999999999999999999999999999999
Q ss_pred ecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeec
Q 041308 162 CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSK 229 (244)
Q Consensus 162 ~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~ 229 (244)
.|.+.++....+........+|+.|+. ...+++.+|.++|++++++|||+.+++.....+..++-+.
T Consensus 297 ~e~~~~~~~~~~~~~~~~~~~d~~m~~-~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~ 363 (364)
T 3p9c_A 297 VQCILPVNPEANPSSQGVFHVDMIMLA-HNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFT 363 (364)
T ss_dssp EECCBCSSCCSSHHHHHHHHHHHHHHH-HCSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred EEeccCCCCCcchhhhhHHHhHHHHHh-cccCCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEe
Confidence 999987764333222333567777774 3578999999999999999999999999988777666543
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=6.2e-38 Score=272.16 Aligned_cols=227 Identities=33% Similarity=0.642 Sum_probs=202.1
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
.+|.+|.+++|+|. ++++..+|.++|+++..+++..+.|+++|..+.....+.+++.++.+++..+|||||||+|.++.
T Consensus 141 ~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~ 219 (368)
T 3reo_A 141 EPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVAS 219 (368)
T ss_dssp GGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHH
T ss_pred hhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHH
Confidence 57999999999999 99999999999999999999999999999998888788899888657888999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.+++++|+++ ++++|+|.+++.+++.++++++.+|+++++|.+|+|++.+++|+|+++++.++|++++++|||||+++|
T Consensus 220 ~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i 298 (368)
T 3reo_A 220 MIVAKYPSIN-AINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIV 298 (368)
T ss_dssp HHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred HHHHhCCCCE-EEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 9999999999 999999999999998899999999999888878999999999999999999999999999999999999
Q ss_pred ecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecCc
Q 041308 162 CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSN 231 (244)
Q Consensus 162 ~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~ 231 (244)
.|.+.++....+........+|+.|+. ...+++.+|.++|++++++|||+.+++.....+..++...|+
T Consensus 299 ~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k~ 367 (368)
T 3reo_A 299 AEYILPPSPDPSIATKVVIHTDALMLA-YNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLKT 367 (368)
T ss_dssp EECCCCSSCCCCHHHHHHHHHHHHHHH-HSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEECC
T ss_pred EEeccCCCCCCchhhhHHHhhhHHHHh-hcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEeC
Confidence 999887764433333334567777775 345899999999999999999999999999887777766654
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=9.7e-35 Score=250.29 Aligned_cols=220 Identities=20% Similarity=0.317 Sum_probs=191.9
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
.+|.+|++++|+|+ +++...+|.++|+++..+++..+.|+++|........+.+++.++ +++..+|||||||+|.++.
T Consensus 123 ~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~ 200 (348)
T 3lst_A 123 TMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLL 200 (348)
T ss_dssp HHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHH
T ss_pred HHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHH
Confidence 46999999999999 899999999999999999999999999999998888889999998 9999999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCC-----CCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCC
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPS-----IPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAG 156 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~-----~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg 156 (244)
.+++++|+++ ++++|++.++..++. .++++++.+|+++++|.+|+|++.+++||++++++.++|++++++||||
T Consensus 201 ~l~~~~p~~~-~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkpg 279 (348)
T 3lst_A 201 TVLREHPGLQ-GVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAH 279 (348)
T ss_dssp HHHHHCTTEE-EEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHCCCCE-EEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999 999999877773332 1689999999997788669999999999999999999999999999999
Q ss_pred CEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 157 RKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 157 G~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
|+++|.|.+.++... +. ....+++.++. ..+++.++.++|++++++|||+++++........++.+++
T Consensus 280 G~l~i~e~~~~~~~~-~~---~~~~~d~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 280 GRVLVIDAVVPEGND-AH---QSKEMDFMMLA--ARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp CEEEEEECCBCSSSS-CC---HHHHHHHHHHH--TTSCCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred CEEEEEEeccCCCCC-cc---hhhhcChhhhh--cCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 999999998876532 21 12466777776 5788999999999999999999999988666666665543
No 5
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=1.7e-34 Score=250.82 Aligned_cols=224 Identities=34% Similarity=0.614 Sum_probs=180.2
Q ss_pred CChhhHHHHHhCC-CCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHH
Q 041308 2 SAWPLVHEAVLDP-TIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCL 80 (244)
Q Consensus 2 ~~w~~L~~~~~~g-~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~ 80 (244)
.+|.+|++++++| + ++++..+|.++|+++..+++..+.|+++|........+.+++.++.+++..+|||||||+|.++
T Consensus 146 ~~~~~L~~~l~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~ 224 (372)
T 1fp1_D 146 QVWMNFKEAVVDEDI-DLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNL 224 (372)
T ss_dssp HHHTTHHHHHHSCC---------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHH
T ss_pred HHHHHHHHHHHcCCC-ChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHH
Confidence 3689999999999 7 8898888989999999999999999999998887777888888865778899999999999999
Q ss_pred HHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 81 RIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 81 ~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
..+++++|+++ ++++|++.+++.+++.++++++.+|+++++|.+|+|++.+++||++++++.++|++++++|||||+++
T Consensus 225 ~~l~~~~~~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~ 303 (372)
T 1fp1_D 225 ELIISKYPLIK-GINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVI 303 (372)
T ss_dssp HHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHCCCCe-EEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 99999999999 99999999999999888999999999988777899999999999999998999999999999999999
Q ss_pred EecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccce-eEEEeec
Q 041308 161 ACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIF-TLFLSSK 229 (244)
Q Consensus 161 i~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~~~~~~ 229 (244)
|.|...++....+........+++.++. ..+++.++.++|+++++++||+++++.....+ ..++.++
T Consensus 304 i~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~ 371 (372)
T 1fp1_D 304 IVEFILPEEPNTSEESKLVSTLDNLMFI--TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 371 (372)
T ss_dssp EEEEEECSSCCSSHHHHHHHHHHHHHHH--HHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEE
T ss_pred EEEeccCCCCccchHHHHHHHhhHHHHh--ccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEe
Confidence 9998877654322222133466776664 45688899999999999999999999884433 4555544
No 6
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=1.6e-34 Score=247.33 Aligned_cols=216 Identities=19% Similarity=0.266 Sum_probs=190.9
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
..|.+|++++++|+ +++...+|.++|+++..+++..+.|+++|........+.+++.++ +++..+|||||||+|.++.
T Consensus 108 ~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~ 185 (332)
T 3i53_A 108 LGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLS 185 (332)
T ss_dssp GGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHH
T ss_pred HHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHH
Confidence 57999999999999 889888998999999999999999999999887777778888888 8888999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCCCCc-ceEEEeccccccCCHHHHHHHHHHHHHHc
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTDDECKLIMENYYKAL 153 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L 153 (244)
.+++.+|+.+ ++++|+|.+++.+++. ++++++.+|+++++|. +|+|++.+++|+++++++.++|++++++|
T Consensus 186 ~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L 264 (332)
T 3i53_A 186 ALLTAHEDLS-GTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAA 264 (332)
T ss_dssp HHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCe-EEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999888752 7899999999977884 69999999999999998999999999999
Q ss_pred CCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 154 LAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 154 ~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
+|||+++|.|.+.++. . + ...+++.++. ..+++.+|.++|++++++|||+++++..... ..++.+++
T Consensus 265 ~pgG~l~i~e~~~~~~-~-~-----~~~~d~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 265 GSGGVVLVIEAVAGDE-H-A-----GTGMDLRMLT--YFGGKERSLAELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp TTTCEEEEEECCCC-----C-----CHHHHHHHHH--HHSCCCCCHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred CCCCEEEEEeecCCCC-C-c-----cHHHHHHHHh--hCCCCCCCHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 9999999999987765 1 1 1356777776 5789999999999999999999999998877 66666654
No 7
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=5.1e-34 Score=246.63 Aligned_cols=222 Identities=27% Similarity=0.453 Sum_probs=192.2
Q ss_pred CChhhHHHHHhCC--CCCchhhhcCCCcccccccCchHHH--HHHHHHHcccccchHHHhccC--CCCCCcceEEEEcCC
Q 041308 2 SAWPLVHEAVLDP--TIEPFAKVHGEPAYSYYGKKPKMNG--LMRKAMSRVFVPFMTSVLDGY--DGFKGVKRLVDVGGS 75 (244)
Q Consensus 2 ~~w~~L~~~~~~g--~~~~~~~~~g~~~~~~~~~~~~~~~--~f~~~~~~~~~~~~~~l~~~~--~~~~~~~~vLDvG~G 75 (244)
.+|.+|++++|+| . ++++..+|.++|+++..+++..+ .|+++|........ .+++.+ + +++..+|||||||
T Consensus 127 ~~~~~L~~~l~~g~~~-~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~-~~~~~~vlDvG~G 203 (358)
T 1zg3_A 127 DMWSSSKKWFNEDKEQ-TLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQENKRV-FEGLESLVDVGGG 203 (358)
T ss_dssp GGGGGHHHHHHCSCCC-CHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHH-HHTCSEEEEETCT
T ss_pred HHHHHHHHHHhCCCCC-ChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HHHHhcchh-ccCCCEEEEECCC
Confidence 5799999999999 5 78888889899999999999999 99999988777655 778877 4 6777999999999
Q ss_pred ccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCC
Q 041308 76 AGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLA 155 (244)
Q Consensus 76 ~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~p 155 (244)
+|.++..+++++|+++ ++++|++.+++.+++.++++++.+|+++++|.+|+|++.+++|+++++++.++|++++++|+|
T Consensus 204 ~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p 282 (358)
T 1zg3_A 204 TGGVTKLIHEIFPHLK-CTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISH 282 (358)
T ss_dssp TSHHHHHHHHHCTTSE-EEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGG
T ss_pred cCHHHHHHHHHCCCCe-EEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999 999999999999988788999999999888878999999999999999999999999999999
Q ss_pred ---CCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeec
Q 041308 156 ---GRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSK 229 (244)
Q Consensus 156 ---gG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~ 229 (244)
||+++|.|...++....+........+++.|+. ..+++.++.++|+++++++||+.+++....+...++.++
T Consensus 283 ~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~ 357 (358)
T 1zg3_A 283 KGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLT--MFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357 (358)
T ss_dssp GGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHH--HHSCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEE
T ss_pred CCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhc--cCCCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEe
Confidence 999999999887654322111234567777775 567899999999999999999999998877666666554
No 8
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=2.4e-34 Score=249.71 Aligned_cols=219 Identities=22% Similarity=0.376 Sum_probs=195.4
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
..|.+|++++++|+ +++...+|.++|+++..+++..+.|+++|........+.+++.++ +++..+|||||||+|.++.
T Consensus 141 ~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~ 218 (369)
T 3gwz_A 141 RAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMA 218 (369)
T ss_dssp HHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHH
T ss_pred HHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHH
Confidence 46999999999999 889988998999999999999999999999988888888999998 8888999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCC-------CCCeeEEeCCCCCCCCc-ceEEEeccccccCCHHHHHHHHHHHHHHc
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPS-------IPEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTDDECKLIMENYYKAL 153 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~-------~~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L 153 (244)
.+++.+|+++ ++++|+|.+++.+++ .++++++.+|+++++|. +|+|++.+++|+++++++.++|++++++|
T Consensus 219 ~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L 297 (369)
T 3gwz_A 219 AVLDAFPGLR-GTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAM 297 (369)
T ss_dssp HHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCe-EEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHc
Confidence 9999999999 999999999988875 26899999999977885 69999999999999999999999999999
Q ss_pred CCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEE-ccceeEEEeecC
Q 041308 154 LAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFI-SIIFTLFLSSKS 230 (244)
Q Consensus 154 ~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~~~~~~ 230 (244)
+|||+++|.|.+.++... +. ...+++.++. ..+++.+|.++|++++++|||+++++.. ......++.+++
T Consensus 298 ~pgG~l~i~e~~~~~~~~-~~----~~~~d~~~~~--~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 298 KPDSRLLVIDNLIDERPA-AS----TLFVDLLLLV--LVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp CTTCEEEEEEEBCCSSCC-HH----HHHHHHHHHH--HHSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred CCCCEEEEEEeccCCCCC-Cc----hhHhhHHHHh--hcCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 999999999998877632 22 3467777776 5789999999999999999999999998 566777776654
No 9
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=1.2e-33 Score=243.75 Aligned_cols=221 Identities=27% Similarity=0.428 Sum_probs=190.0
Q ss_pred CChhhHHHHHh-CCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccC--CCCCCcceEEEEcCCccH
Q 041308 2 SAWPLVHEAVL-DPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGY--DGFKGVKRLVDVGGSAGD 78 (244)
Q Consensus 2 ~~w~~L~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~--~~~~~~~~vLDvG~G~G~ 78 (244)
.+|.+|++++| +|+ ++++..+|.++|+++..+++..+.|+++|........+. ++.+ + +++..+|||||||+|.
T Consensus 125 ~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~~~~vlDvG~G~G~ 201 (352)
T 1fp2_A 125 GSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFV-FDGLESIVDVGGGTGT 201 (352)
T ss_dssp HGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHH-HTTCSEEEEETCTTSH
T ss_pred HHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccc-cccCceEEEeCCCccH
Confidence 46999999999 998 899988899999999999999999999999888776666 7777 4 7788999999999999
Q ss_pred HHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCC---
Q 041308 79 CLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLA--- 155 (244)
Q Consensus 79 ~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~p--- 155 (244)
++..+++++|+.+ ++++|++.|++.+++.++++++.+|+++++|.+|+|++.+++||++++++.++|++++++|||
T Consensus 202 ~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~ 280 (352)
T 1fp2_A 202 TAKIICETFPKLK-CIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGK 280 (352)
T ss_dssp HHHHHHHHCTTCE-EEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHHHCCCCe-EEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999 999999999999998788999999998888878999999999999999888999999999999
Q ss_pred CCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeec
Q 041308 156 GRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSK 229 (244)
Q Consensus 156 gG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~ 229 (244)
||+++|.|...++....+........+++.++. .+++.++.++|+++++++||+.+++....+...++.++
T Consensus 281 gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~---~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~ 351 (352)
T 1fp2_A 281 RGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC---LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351 (352)
T ss_dssp CCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG---GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEeecCCCCCccchhhhHhhccHHHHh---ccCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEe
Confidence 999999999877653321111123456666664 34788999999999999999999998876666666654
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.1e-33 Score=237.57 Aligned_cols=217 Identities=23% Similarity=0.332 Sum_probs=190.8
Q ss_pred ChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHH
Q 041308 3 AWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRI 82 (244)
Q Consensus 3 ~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~ 82 (244)
.|.+|++++++|+ ++++..+|.++|+++..+++..+.|+++| .......+.+++.++ +++ .+|||||||+|.++..
T Consensus 109 ~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~ 184 (334)
T 2ip2_A 109 AWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKA 184 (334)
T ss_dssp HTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHH
T ss_pred HHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHH
Confidence 6899999999999 89988889899999999999999999999 888777888999888 888 9999999999999999
Q ss_pred HHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCCCCc-ceEEEeccccccCCHHHHHHHHHHHHHHcC
Q 041308 83 ILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTDDECKLIMENYYKALL 154 (244)
Q Consensus 83 l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~ 154 (244)
+++.+|+.+ ++++|++.+++.+++. ++++++.+|+++++|. +|+|++.+++|+++++++.+++++++++|+
T Consensus 185 l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~ 263 (334)
T 2ip2_A 185 ILQAEPSAR-GVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMA 263 (334)
T ss_dssp HHHHCTTCE-EEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSC
T ss_pred HHHHCCCCE-EEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcC
Confidence 999999999 9999998888888753 6899999999988776 599999999999999999999999999999
Q ss_pred CCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 155 AGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 155 pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
|||++++.|...++... +. ....+++.++. ..++..++.++|+++++++||+++++....+...++.++|
T Consensus 264 pgG~l~i~e~~~~~~~~-~~---~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 264 GDGRVVVIERTISASEP-SP---MSVLWDVHLFM--ACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp TTCEEEEEECCBCSSSC-CH---HHHHHHHHHHH--HHSCCCCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred CCCEEEEEEeccCCCCC-cc---hhHHhhhHhHh--hCCCcCCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999998776532 22 23456666665 4578889999999999999999999988877777777765
No 11
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.97 E-value=2.2e-31 Score=230.04 Aligned_cols=221 Identities=19% Similarity=0.316 Sum_probs=190.7
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
..|.+|.+.+++|+ ++++..+|.++|+++..+++....|+..|........+.+++.++ +++..+|||||||+|.++.
T Consensus 122 ~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~ 199 (360)
T 1tw3_A 122 ISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAA 199 (360)
T ss_dssp GGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHH
T ss_pred HHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHH
Confidence 57999999999999 888888898999988889999999999999888888888999998 8888999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCCCCc-ceEEEeccccccCCHHHHHHHHHHHHHHc
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTDDECKLIMENYYKAL 153 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L 153 (244)
.+++.+|+++ ++++|++.+++.++++ ++++++.+|+++++|. +|+|++.+++|+++++++.+++++++++|
T Consensus 200 ~l~~~~~~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L 278 (360)
T 1tw3_A 200 AIARRAPHVS-ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEAL 278 (360)
T ss_dssp HHHHHCTTCE-EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTE
T ss_pred HHHHhCCCCE-EEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhc
Confidence 9999999999 9999998888887752 4899999999987777 69999999999999998889999999999
Q ss_pred CCCCEEEEeccc-CCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccce-----eEEEe
Q 041308 154 LAGRKLIACEPV-LPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIF-----TLFLS 227 (244)
Q Consensus 154 ~pgG~lii~d~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-----~~~~~ 227 (244)
+|||++++.|.. .++... +. ....++..++. ..++..++.++|+++++++||+++++...... ..++.
T Consensus 279 ~pgG~l~i~e~~~~~~~~~-~~---~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~ 352 (360)
T 1tw3_A 279 EPGGRILIHERDDLHENSF-NE---QFTELDLRMLV--FLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLV 352 (360)
T ss_dssp EEEEEEEEEECCBCGGGCC-SH---HHHHHHHHHHH--HHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEE
T ss_pred CCCcEEEEEEEeccCCCCC-cc---hhhhccHHHhh--hcCCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEE
Confidence 999999999987 554422 11 12355666655 45788899999999999999999999887654 67777
Q ss_pred ecCc
Q 041308 228 SKSN 231 (244)
Q Consensus 228 ~~~~ 231 (244)
++|+
T Consensus 353 ~~~~ 356 (360)
T 1tw3_A 353 LAPA 356 (360)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7765
No 12
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.97 E-value=9.3e-32 Score=232.92 Aligned_cols=222 Identities=16% Similarity=0.149 Sum_probs=174.6
Q ss_pred CChhhHHHHHhCCCCCchhhhcC--CCcccccccCchHHH----HHHHHHHcccccchHHHhccCCCCCCcceEEEEcCC
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHG--EPAYSYYGKKPKMNG----LMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGS 75 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g--~~~~~~~~~~~~~~~----~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G 75 (244)
++|.+|++++|+|+ +++...+| .++|+++..+++..+ .|+..|..... ..+++.+. ..+..+|||||||
T Consensus 115 ~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G 189 (363)
T 3dp7_A 115 QGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGN 189 (363)
T ss_dssp HHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCT
T ss_pred hhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCC
Confidence 47999999999999 78887887 578999999998766 36666655432 23444433 3567899999999
Q ss_pred ccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC---CCc-ceEEEeccccccCCHHHHHH
Q 041308 76 AGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS---IHV-VDAIFMKWVLTTWTDDECKL 144 (244)
Q Consensus 76 ~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~---~p~-~D~v~~~~~lh~~~~~~~~~ 144 (244)
+|.++..+++++|+.+ ++++|+|.+++.++++ ++++++.+|++++ +|. +|+|++.+++|+|+++++.+
T Consensus 190 ~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~ 268 (363)
T 3dp7_A 190 TGKWATQCVQYNKEVE-VTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVIS 268 (363)
T ss_dssp TCHHHHHHHHHSTTCE-EEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHH
T ss_pred cCHHHHHHHHhCCCCE-EEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHH
Confidence 9999999999999999 9999999999888753 5899999999985 664 59999999999999999999
Q ss_pred HHHHHHHHcCCCCEEEEecccCCCCCCchH-HhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccce-
Q 041308 145 IMENYYKALLAGRKLIACEPVLPDDSNESQ-RTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIF- 222 (244)
Q Consensus 145 ~l~~~~~~L~pgG~lii~d~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~- 222 (244)
+|++++++|||||+++|.|.+.++...... ........++.++. ..+++.+|.++|++++++|||+++++.+..+.
T Consensus 269 ~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~ 346 (363)
T 3dp7_A 269 ILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMA--NGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLG 346 (363)
T ss_dssp HHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSS--CSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTT
T ss_pred HHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhh--CCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence 999999999999999999998876533211 10111222333343 45678899999999999999999999876553
Q ss_pred eEEEeecCc
Q 041308 223 TLFLSSKSN 231 (244)
Q Consensus 223 ~~~~~~~~~ 231 (244)
..++..++.
T Consensus 347 ~svi~~~~~ 355 (363)
T 3dp7_A 347 HSILQCRLK 355 (363)
T ss_dssp BEEEEEEEC
T ss_pred ceEEEEeec
Confidence 566665554
No 13
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.97 E-value=2.2e-31 Score=231.15 Aligned_cols=221 Identities=23% Similarity=0.294 Sum_probs=188.4
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLR 81 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~ 81 (244)
..|.+|++++++|+ +++...+|.++|+++..+++....|+++|........+.+++.++ +++..+|||||||+|.++.
T Consensus 121 ~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~ 198 (374)
T 1qzz_A 121 LAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLA 198 (374)
T ss_dssp GGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHH
T ss_pred HHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHH
Confidence 57899999999999 888888899999999999999999999999888888888999988 8888999999999999999
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCCCCc-ceEEEeccccccCCHHHHHHHHHHHHHHc
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTDDECKLIMENYYKAL 153 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L 153 (244)
.+++.+|+.+ ++++|++.+++.++++ ++++++.+|+++++|. +|+|++.+++||++++++.+++++++++|
T Consensus 199 ~l~~~~~~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L 277 (374)
T 1qzz_A 199 AIALRAPHLR-GTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRAL 277 (374)
T ss_dssp HHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHE
T ss_pred HHHHHCCCCE-EEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhc
Confidence 9999999999 9999998898888752 4899999999887777 69999999999999998889999999999
Q ss_pred CCCCEEEEecc--cCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcccee-----EEE
Q 041308 154 LAGRKLIACEP--VLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFT-----LFL 226 (244)
Q Consensus 154 ~pgG~lii~d~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~~~ 226 (244)
+|||++++.|. ..++... +. ....++..++. ..++..++.++|.++++++||+++++....... .++
T Consensus 278 ~pgG~l~i~e~~~~~~~~~~-~~---~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i 351 (374)
T 1qzz_A 278 EPGGRLLVLDRADVEGDGAD-RF---FSTLLDLRMLT--FMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSIL 351 (374)
T ss_dssp EEEEEEEEEECCH--------HH---HHHHHHHHHHH--HHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEE
T ss_pred CCCcEEEEEechhhcCCCCC-cc---hhhhcchHHHH--hCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEE
Confidence 99999999998 7654421 21 22456666665 567889999999999999999999998887665 677
Q ss_pred eecCc
Q 041308 227 SSKSN 231 (244)
Q Consensus 227 ~~~~~ 231 (244)
.+++.
T Consensus 352 ~~~~~ 356 (374)
T 1qzz_A 352 EFTAV 356 (374)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 76654
No 14
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.97 E-value=1.6e-30 Score=224.04 Aligned_cols=216 Identities=16% Similarity=0.234 Sum_probs=176.3
Q ss_pred CCChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCCCC-cceEEEEcCCccHH
Q 041308 1 MSAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKG-VKRLVDVGGSAGDC 79 (244)
Q Consensus 1 ~~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~-~~~vLDvG~G~G~~ 79 (244)
+..|.+|++++++|++.+|+.. +.+..+++....|..+|.....+ +..+++.++ +++ ..+|||||||+|.+
T Consensus 122 ~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~ 193 (352)
T 3mcz_A 122 WDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTY 193 (352)
T ss_dssp TTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHH
T ss_pred HHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHH
Confidence 4689999999999984443332 22456888899999999873333 346888888 777 89999999999999
Q ss_pred HHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC---CCc-ceEEEeccccccCCHHHHHHHHHH
Q 041308 80 LRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS---IHV-VDAIFMKWVLTTWTDDECKLIMEN 148 (244)
Q Consensus 80 ~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~---~p~-~D~v~~~~~lh~~~~~~~~~~l~~ 148 (244)
+..+++.+|+.+ ++++|++.+++.+++. ++++++.+|++++ .+. +|+|++.+++||++++++.++|++
T Consensus 194 ~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~ 272 (352)
T 3mcz_A 194 LAQVLRRHPQLT-GQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGH 272 (352)
T ss_dssp HHHHHHHCTTCE-EEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHHhCCCCe-EEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHH
Confidence 999999999999 9999998888877752 5799999999886 444 599999999999999999999999
Q ss_pred HHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEee
Q 041308 149 YYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSS 228 (244)
Q Consensus 149 ~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~ 228 (244)
++++|+|||++++.|.+.++....+.. ...+++.++. ...++..++.++|+++++++||++++.. .++..++++
T Consensus 273 ~~~~L~pgG~l~i~e~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a 346 (352)
T 3mcz_A 273 AAGLVKPGGALLILTMTMNDDRVTPAL---SADFSLHMMV-NTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIG 346 (352)
T ss_dssp HHHTEEEEEEEEEEEECCCTTSSSSHH---HHHHHHHHHH-HSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEE
T ss_pred HHHHcCCCCEEEEEEeccCCCCCCCch---HHHhhHHHHh-hCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEE
Confidence 999999999999999988776433322 3466777765 3457889999999999999999999843 456777887
Q ss_pred cCc
Q 041308 229 KSN 231 (244)
Q Consensus 229 ~~~ 231 (244)
+|+
T Consensus 347 ~kp 349 (352)
T 3mcz_A 347 QRS 349 (352)
T ss_dssp ECC
T ss_pred ecC
Confidence 775
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.97 E-value=6.5e-30 Score=220.96 Aligned_cols=209 Identities=16% Similarity=0.231 Sum_probs=175.1
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCch---HHHHHHHHHHcccc-cchHHHhccCCCCCCcceEEEEcCCcc
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPK---MNGLMRKAMSRVFV-PFMTSVLDGYDGFKGVKRLVDVGGSAG 77 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~---~~~~f~~~~~~~~~-~~~~~l~~~~~~~~~~~~vLDvG~G~G 77 (244)
..|.+|++++++|+ + |+++..+++ ..+.|...|..... ...+.+++.++ +++..+|||||||+|
T Consensus 135 ~~~~~L~~~l~~g~-~----------~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G 202 (359)
T 1x19_A 135 DFYMGLSQAVRGQK-N----------FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIG 202 (359)
T ss_dssp HTGGGHHHHHTTSC-C----------CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTC
T ss_pred HHHHHHHHHHhcCC-C----------CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCccc
Confidence 47999999999998 3 566777888 99999999999888 77888999998 888899999999999
Q ss_pred HHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCcceEEEeccccccCCHHHHHHHHHHH
Q 041308 78 DCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDECKLIMENY 149 (244)
Q Consensus 78 ~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~~~~~l~~~ 149 (244)
.++..+++++|+.+ ++++|++.+++.++++ .+++++.+|+++. ++.+|+|++.+++|++++++..++|+++
T Consensus 203 ~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~ 281 (359)
T 1x19_A 203 DISAAMLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKA 281 (359)
T ss_dssp HHHHHHHHHCTTCE-EEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCe-EEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHH
Confidence 99999999999999 9999998899888742 5699999999885 6667999999999999998899999999
Q ss_pred HHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCcee----cCHHHHHHHHHhCCCCeEEEEEccceeEE
Q 041308 150 YKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKH----KTEQEFKQLGFSTGFPHLRAFISIIFTLF 225 (244)
Q Consensus 150 ~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~~ 225 (244)
+++|||||++++.|...++. ..+... ..+ .++. ...++.. ++.++|.++++++||+++++.... ...+
T Consensus 282 ~~~L~pgG~l~i~e~~~~~~-~~~~~~---~~~--~~~~-~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~v 353 (359)
T 1x19_A 282 FDAMRSGGRLLILDMVIDDP-ENPNFD---YLS--HYIL-GAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLL 353 (359)
T ss_dssp HTTCCTTCEEEEEEECCCCT-TSCCHH---HHH--HHGG-GGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEE
T ss_pred HHhcCCCCEEEEEecccCCC-CCchHH---HHH--HHHH-hcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceE
Confidence 99999999999999887654 222211 112 2322 1234666 899999999999999999998877 6677
Q ss_pred EeecCc
Q 041308 226 LSSKSN 231 (244)
Q Consensus 226 ~~~~~~ 231 (244)
+.++|+
T Consensus 354 i~a~kp 359 (359)
T 1x19_A 354 VQAVKP 359 (359)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 777764
No 16
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.97 E-value=7.9e-30 Score=218.07 Aligned_cols=216 Identities=14% Similarity=0.108 Sum_probs=182.7
Q ss_pred CChhhHHHHHhCCCCCchhhhcCCCcccccccCchHHHHHHHHHHcccccchHHHhccCCCC--CCcceEEEEcCCccHH
Q 041308 2 SAWPLVHEAVLDPTIEPFAKVHGEPAYSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGF--KGVKRLVDVGGSAGDC 79 (244)
Q Consensus 2 ~~w~~L~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~--~~~~~vLDvG~G~G~~ 79 (244)
..|.+|++++++|+ ++++ + |+++..+++....|.+.|.......+..+++.++ + ++..+|||+|||+|.+
T Consensus 108 ~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~ 179 (335)
T 2r3s_A 108 NGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLF 179 (335)
T ss_dssp GGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHH
T ss_pred HHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHH
Confidence 47999999999999 6654 3 7778889999999999999888877788888887 7 7889999999999999
Q ss_pred HHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEeccccccCCHHHHHHHHHHHH
Q 041308 80 LRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWTDDECKLIMENYY 150 (244)
Q Consensus 80 ~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~ 150 (244)
+..+++.+|+.+ ++++|++.+++.+++. ++++++.+|+++. ++. +|+|++.+++|++++++..+++++++
T Consensus 180 ~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~ 258 (335)
T 2r3s_A 180 GIAVAQHNPNAE-IFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIK 258 (335)
T ss_dssp HHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCe-EEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHH
Confidence 999999999999 9999998888888753 4799999999874 665 59999999999999998999999999
Q ss_pred HHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 151 KALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 151 ~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
++|+|||++++.|...++....+. ....++..++. ...++..++.++|.++++++||+.+++....++..++.++.
T Consensus 259 ~~L~pgG~l~i~e~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 334 (335)
T 2r3s_A 259 TALAVEGKVIVFDFIPNSDRITPP---DAAAFSLVMLA-TTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVAY 334 (335)
T ss_dssp HHEEEEEEEEEEECCCCTTSSCSH---HHHHHHHHHHH-HSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEEE
T ss_pred HhCCCCcEEEEEeecCCCCcCCch---HHHHHHHHHHe-eCCCCCcCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEec
Confidence 999999999999998776533222 23456666665 33478899999999999999999999998887766666653
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.92 E-value=1.6e-24 Score=179.30 Aligned_cols=193 Identities=15% Similarity=0.177 Sum_probs=136.0
Q ss_pred CchHHHHHHHHHHcccc------cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHh
Q 041308 34 KPKMNGLMRKAMSRVFV------PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAK 104 (244)
Q Consensus 34 ~~~~~~~f~~~~~~~~~------~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~ 104 (244)
+...++.|++...+... ..+..+++.+ .+++.+|||+|||+|.++..+++.. |+++ ++++|+ +.|++.
T Consensus 35 ~~~va~~fdd~i~rsvP~Y~~~~~~i~~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~-v~gvD~s~~ml~~ 111 (261)
T 4gek_A 35 DERVAEVFPDMIQRSVPGYSNIISMIGMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIER 111 (261)
T ss_dssp CHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCE-EEEEESCHHHHHH
T ss_pred CcchhhhhhhhHhhcCCCHHHHHHHHHHHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCE-EEEEECCHHHHHH
Confidence 45667778776543221 1123344443 4678999999999999999999875 5678 999999 999998
Q ss_pred CCCC-------CCeeEEeCCCCCC-CCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCc-hHH
Q 041308 105 APSI-------PEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNE-SQR 175 (244)
Q Consensus 105 a~~~-------~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~-~~~ 175 (244)
|+++ .+++++++|+.+. ++.+|+|++..++||+++++..++|++++++|||||+|++.|....+.... ...
T Consensus 112 A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~ 191 (261)
T 4gek_A 112 CRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELL 191 (261)
T ss_dssp HHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHH
T ss_pred HHHHHHhhccCceEEEeecccccccccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHH
Confidence 8752 5899999999774 556799999999999999988899999999999999999999877655211 000
Q ss_pred hhhhhcccHhhhhhhc------------cCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecCc
Q 041308 176 TRALLEGDIFVMTIYR------------AKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSN 231 (244)
Q Consensus 176 ~~~~~~~d~~~~~~~~------------~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~ 231 (244)
.. ...+.....++. .--...+.+++.++|++|||+.+++..-..+..-++|.|+
T Consensus 192 ~~--~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~ 257 (261)
T 4gek_A 192 FN--MHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKA 257 (261)
T ss_dssp HH--HHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEECC
T ss_pred HH--HHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEEc
Confidence 00 000100000000 0012358899999999999999987544344444566664
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.89 E-value=2.5e-22 Score=162.96 Aligned_cols=193 Identities=11% Similarity=0.060 Sum_probs=137.7
Q ss_pred HHHHHHHHHHcccc---cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----
Q 041308 37 MNGLMRKAMSRVFV---PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---- 108 (244)
Q Consensus 37 ~~~~f~~~~~~~~~---~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---- 108 (244)
....|+........ ...+.+++.+....+..+|||+|||+|.++..+++.+|..+ ++++|+ +.+++.+++.
T Consensus 13 ~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~ 91 (234)
T 3dtn_A 13 VSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEAT-FTLVDMSEKMLEIAKNRFRGN 91 (234)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTCSC
T ss_pred HHHHHHHhHHHhCcCHHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHhhccC
Confidence 34455554433222 22344555554345668999999999999999999999888 999999 9999888753
Q ss_pred CCeeEEeCCCCCC-CCc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccH--
Q 041308 109 PEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDI-- 184 (244)
Q Consensus 109 ~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~-- 184 (244)
.+++++.+|+.+. .+. .|+|++..++||+++++...++++++++|||||++++.+...++....... ....+...
T Consensus 92 ~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~ 170 (234)
T 3dtn_A 92 LKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENL-NKTIWRQYVE 170 (234)
T ss_dssp TTEEEEESCTTTCCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH-HHHHHHHHHH
T ss_pred CCEEEEeCchhccCCCCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhH-HHHHHHHHHH
Confidence 4899999999775 443 599999999999999887789999999999999999999876654210000 00000000
Q ss_pred ------hhhh---hhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecCc
Q 041308 185 ------FVMT---IYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSN 231 (244)
Q Consensus 185 ------~~~~---~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~ 231 (244)
.... ........++.+++.++|++|||+.+++.....+.+...+.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~ 226 (234)
T 3dtn_A 171 NSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKT 226 (234)
T ss_dssp TSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECC
T ss_pred hcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEec
Confidence 0000 0012234568899999999999999999888777777776664
No 19
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.85 E-value=1.5e-20 Score=150.33 Aligned_cols=164 Identities=15% Similarity=0.076 Sum_probs=117.0
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCCCCc--ceE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKSIHV--VDA 127 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~~p~--~D~ 127 (244)
...+++.+...++..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.+++. ++++++.+|+.+..+. .|+
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~ 110 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADR-VTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDA 110 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSE-EEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEE
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCe-EEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeE
Confidence 3445555543556679999999999999999988 456 999999 9999988863 6899999999877444 499
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC------ceecCHHH
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK------GKHKTEQE 201 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~t~~e 201 (244)
|++..++||+++++...++++++++|||||++++.+...+.......... ......... ...+ ....+.++
T Consensus 111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 187 (218)
T 3ou2_A 111 VFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRRT-LQDGRSFRIVKVFRSPAE 187 (218)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEEE-CTTSCEEEEECCCCCHHH
T ss_pred EEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceeee-cCCcchhhHhhcCCCHHH
Confidence 99999999999987889999999999999999999876543211000000 000000000 0011 12358999
Q ss_pred HHHHHHhCCCCeEEEEEccce
Q 041308 202 FKQLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~~~~~ 222 (244)
+.++++++||++........+
T Consensus 188 ~~~~l~~aGf~v~~~~~~~~~ 208 (218)
T 3ou2_A 188 LTERLTALGWSCSVDEVHPGF 208 (218)
T ss_dssp HHHHHHHTTEEEEEEEEETTE
T ss_pred HHHHHHHCCCEEEeeeccccc
Confidence 999999999996665554433
No 20
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.85 E-value=7.9e-22 Score=157.74 Aligned_cols=186 Identities=13% Similarity=0.168 Sum_probs=129.6
Q ss_pred HHHHHHHHHccccc----chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----
Q 041308 38 NGLMRKAMSRVFVP----FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---- 108 (244)
Q Consensus 38 ~~~f~~~~~~~~~~----~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---- 108 (244)
...|++.......+ ..+.+++.++ .++. +|||+|||+|.++..+++. +..+ ++++|+ +.+++.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~-v~~~D~s~~~~~~a~~~~~~~ 89 (219)
T 3dlc_A 14 AKNMDEISKTLFAPIYPIIAENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFS-IRALDFSKHMNEIALKNIADA 89 (219)
T ss_dssp HHHHHHHHHTTTTTHHHHHHHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEE-EEEEESCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHhhccccHHHHHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCe-EEEEECCHHHHHHHHHHHHhc
Confidence 34455554443333 3445566665 5554 9999999999999999998 7778 999999 9999888764
Q ss_pred ---CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcc
Q 041308 109 ---PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEG 182 (244)
Q Consensus 109 ---~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~ 182 (244)
++++++.+|+.+. ++. .|+|++..++||+++. ..++++++++|||||++++.+...+...............
T Consensus 90 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~ 167 (219)
T 3dlc_A 90 NLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKN 167 (219)
T ss_dssp TCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHC
T ss_pred cccCceEEEEcCHHHCCCCcccccEEEECchHhhccCH--HHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhH
Confidence 5899999999774 554 4999999999999765 5899999999999999999876543210000000000000
Q ss_pred cHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 183 DIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 183 d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
..+... .......++.+++.++++++||+.+++.....+..+++.++
T Consensus 168 ~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~k~ 214 (219)
T 3dlc_A 168 PDWKEF-NRKNISQENVERFQNVLDEIGISSYEIILGDEGFWIIISKT 214 (219)
T ss_dssp TTHHHH-HHHHSSHHHHHHHHHHHHHHTCSSEEEEEETTEEEEEEBCC
T ss_pred HHHHhh-hhhccccCCHHHHHHHHHHcCCCeEEEEecCCceEEEEecc
Confidence 000000 01123445789999999999999999988777766666554
No 21
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.85 E-value=1e-20 Score=151.72 Aligned_cols=158 Identities=16% Similarity=0.063 Sum_probs=128.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p 123 (244)
.+.+++.++ ..+..+|||+|||+|.++..+++.. |..+ ++++|. +.+++.+++. +++++..+|+.+. ++
T Consensus 26 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~ 103 (219)
T 3dh0_A 26 PEKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGK-VYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP 103 (219)
T ss_dssp HHHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC
T ss_pred HHHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCC
Confidence 345666666 7778899999999999999999997 7778 999999 9999888763 5799999999764 44
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
. .|+|++..++||+++. ..+++++.++|+|||++++.++........+ .....++.++
T Consensus 104 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------------~~~~~~~~~~ 163 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDKGP------------------PPEEVYSEWE 163 (219)
T ss_dssp SSCEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSC------------------CGGGSCCHHH
T ss_pred CCCeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEecccccccCC------------------chhcccCHHH
Confidence 4 4999999999999865 5899999999999999999987655432111 1123467999
Q ss_pred HHHHHHhCCCCeEEEEEccceeEEEeecCch
Q 041308 202 FKQLGFSTGFPHLRAFISIIFTLFLSSKSNF 232 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~ 232 (244)
+.++++++||+++++.........++++|+.
T Consensus 164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~ 194 (219)
T 3dh0_A 164 VGLILEDAGIRVGRVVEVGKYCFGVYAMIVK 194 (219)
T ss_dssp HHHHHHHTTCEEEEEEEETTTEEEEEEECC-
T ss_pred HHHHHHHCCCEEEEEEeeCCceEEEEEEecc
Confidence 9999999999999999888888888888754
No 22
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.84 E-value=6.1e-21 Score=153.18 Aligned_cols=169 Identities=14% Similarity=0.194 Sum_probs=120.1
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCC-CCc-ceEE
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKS-IHV-VDAI 128 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~-~p~-~D~v 128 (244)
..+++.+. ..+..+|||+|||+|.++..+++. +.+ ++++|+ +.+++.+++. .+++++.+|+.+. .+. .|+|
T Consensus 35 ~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v 110 (220)
T 3hnr_A 35 EDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRT-VYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTI 110 (220)
T ss_dssp HHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCE-EEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEE
T ss_pred HHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCe-EEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEE
Confidence 34555554 456789999999999999999987 456 999999 9999888764 4899999999775 443 5999
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcc---cHhhhhhhccCceecCHHHHHHH
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEG---DIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
++..++||+++++...+|++++++|||||++++.+....... ......... ...............+.+++.++
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQD---AYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTI 187 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHH---HHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHH
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChH---HHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHH
Confidence 999999999999877799999999999999999986554321 110000000 00000000111234488999999
Q ss_pred HHhCCCCeEEEEEccceeEEEeecC
Q 041308 206 GFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 206 l~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
++++||+++...... ...++.+++
T Consensus 188 l~~aGf~v~~~~~~~-~~w~~~~~~ 211 (220)
T 3hnr_A 188 FENNGFHVTFTRLNH-FVWVMEATK 211 (220)
T ss_dssp HHHTTEEEEEEECSS-SEEEEEEEE
T ss_pred HHHCCCEEEEeeccc-eEEEEeehh
Confidence 999999888776653 333444433
No 23
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.84 E-value=2.4e-20 Score=153.59 Aligned_cols=157 Identities=14% Similarity=0.152 Sum_probs=124.7
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc--
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV-- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~-- 124 (244)
.+.+++.++ .++..+|||+|||+|.++..+++.+ +.+ ++++|+ +.+++.+++. ++++++.+|+.+. ++.
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAH-THGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENN 120 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTC
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCc
Confidence 456777776 7788899999999999999999987 567 999999 9999888764 6899999999874 544
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++..++||+++++...++++++++|||||++++.+...+... ++. ..+..... ..+...++.+++.+
T Consensus 121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~~~----~~~~~~~~---~~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE--NWD----DEFKEYVK---QRKYTLITVEEYAD 191 (266)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG--GCC----HHHHHHHH---HHTCCCCCHHHHHH
T ss_pred EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc--cch----HHHHHHHh---cCCCCCCCHHHHHH
Confidence 4999999999999878888999999999999999999988665421 110 01111111 22345678999999
Q ss_pred HHHhCCCCeEEEEEccc
Q 041308 205 LGFSTGFPHLRAFISII 221 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~ 221 (244)
+++++||+++++.....
T Consensus 192 ~l~~~Gf~~~~~~~~~~ 208 (266)
T 3ujc_A 192 ILTACNFKNVVSKDLSD 208 (266)
T ss_dssp HHHHTTCEEEEEEECHH
T ss_pred HHHHcCCeEEEEEeCCH
Confidence 99999999999887654
No 24
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.84 E-value=1.4e-20 Score=155.03 Aligned_cols=167 Identities=11% Similarity=0.124 Sum_probs=121.3
Q ss_pred HHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeE
Q 041308 41 MRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTH 113 (244)
Q Consensus 41 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~ 113 (244)
|............+.+++.++ ..+..+|||||||+|.++..+++..+ + ++++|+ +.|++.+++. +++++
T Consensus 14 ~~~s~~~~~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~l~~a~~~~~~~~~~~v~~ 89 (260)
T 1vl5_A 14 YVTSQIHAKGSDLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--K-VVAFDLTEDILKVARAFIEGNGHQQVEY 89 (260)
T ss_dssp ---------CCCHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHTTCCSEEE
T ss_pred eecCccccCHHHHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--E-EEEEeCCHHHHHHHHHHHHhcCCCceEE
Confidence 333333444455666777776 67789999999999999999998875 6 999999 9999888753 67999
Q ss_pred EeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhh-hhh
Q 041308 114 IGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFV-MTI 189 (244)
Q Consensus 114 ~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~-~~~ 189 (244)
+.+|+.+. ++. .|+|++..++||+++. ..+|++++++|||||++++.+...+.. +.... +..... ..
T Consensus 90 ~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~---~~~~~---~~~~~~~~~- 160 (260)
T 1vl5_A 90 VQGDAEQMPFTDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEN---DAFDV---FYNYVEKER- 160 (260)
T ss_dssp EECCC-CCCSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSS---HHHHH---HHHHHHHHH-
T ss_pred EEecHHhCCCCCCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCC---HHHHH---HHHHHHHhc-
Confidence 99999774 554 4999999999999876 489999999999999999998765543 22111 111111 11
Q ss_pred hccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 190 YRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 190 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.......++.++|.++|+++||+++.+....
T Consensus 161 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 191 (260)
T 1vl5_A 161 DYSHHRAWKKSDWLKMLEEAGFELEELHCFH 191 (260)
T ss_dssp CTTCCCCCBHHHHHHHHHHHTCEEEEEEEEE
T ss_pred CccccCCCCHHHHHHHHHHCCCeEEEEEEee
Confidence 1123456789999999999999998887654
No 25
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.83 E-value=2.4e-20 Score=151.92 Aligned_cols=166 Identities=13% Similarity=0.144 Sum_probs=122.8
Q ss_pred HHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC
Q 041308 38 NGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG 116 (244)
Q Consensus 38 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g 116 (244)
...|..........+.+.+...++.+++..+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. ++++.+
T Consensus 14 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~--~~~~~~ 88 (240)
T 3dli_A 14 YFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIE-SIGVDINEDMIKFCEGK--FNVVKS 88 (240)
T ss_dssp HHHHHHHHTCCHHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCC-EEEECSCHHHHHHHHTT--SEEECS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCc-EEEEECCHHHHHHHHhh--cceeec
Confidence 3444444443333444455555543566789999999999999999987 456 999999 9999998875 899999
Q ss_pred CCCC---CCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc
Q 041308 117 DMFK---SIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 191 (244)
Q Consensus 117 d~~~---~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 191 (244)
|+.+ +++. .|+|++..++||+++++...++++++++|||||++++....... . .. ..+. .. ..
T Consensus 89 d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~----~-~~----~~~~-~~--~~ 156 (240)
T 3dli_A 89 DAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS----L-YS----LINF-YI--DP 156 (240)
T ss_dssp CHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS----H-HH----HHHH-TT--ST
T ss_pred cHHHHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch----h-HH----HHHH-hc--Cc
Confidence 9866 4444 49999999999999887789999999999999999997763221 1 10 1111 11 12
Q ss_pred cCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 192 AKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 192 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.....++.+++.++++++||+++++....
T Consensus 157 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 157 THKKPVHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp TCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred cccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence 33456789999999999999999887654
No 26
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.83 E-value=8e-21 Score=156.81 Aligned_cols=166 Identities=12% Similarity=0.082 Sum_probs=120.9
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc-ceEEEecc-ccccCC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV-VDAIFMKW-VLTTWT 138 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~-~D~v~~~~-~lh~~~ 138 (244)
++..+|||||||+|.++..+++..+ + ++++|+ +.+++.+++. .+++++.+|+.+. .+. .|+|++.. ++||++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--T-VEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--E-EEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--e-EEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 4568999999999999999998754 5 999999 9999988864 6899999999775 433 49999998 999997
Q ss_pred H-HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhh---------h-----------hhcccHhhhhhhccC----
Q 041308 139 D-DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTR---------A-----------LLEGDIFVMTIYRAK---- 193 (244)
Q Consensus 139 ~-~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~---------~-----------~~~~d~~~~~~~~~~---- 193 (244)
+ ++...+|++++++|||||++++.+...++.....+... . ....+..+.. ...+
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 204 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLV-AGPDRGIT 204 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEE-EETTTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEE-ecCCCcEE
Confidence 5 56678999999999999999997654443211000000 0 0000111100 0011
Q ss_pred -------ceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecCchh
Q 041308 194 -------GKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSNFS 233 (244)
Q Consensus 194 -------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~ 233 (244)
.+.++.++|.++|++|||+++++........+.+++|++.
T Consensus 205 ~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a~ 251 (263)
T 3pfg_A 205 HHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGAK 251 (263)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC-
T ss_pred EEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCCC
Confidence 2346899999999999999999987777788888888754
No 27
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.81 E-value=1e-19 Score=150.73 Aligned_cols=158 Identities=14% Similarity=0.069 Sum_probs=122.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p 123 (244)
.+.+++.++ ..+..+|||||||+|.++..+++.. +.+ ++++|+ +.+++.+++. ++++++.+|+.+. ++
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVR-VTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence 455777776 7788999999999999999999876 567 999999 9999888753 4799999999774 54
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
. .|+|++..++||+++. ..+|++++++|||||++++.+........ .... ...+..... .+....++.++
T Consensus 127 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~~~---~~~~~~~~~--~~~~~~~~~~~ 198 (273)
T 3bus_A 127 DASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVE-GAKK---EAVDAFRAG--GGVLSLGGIDE 198 (273)
T ss_dssp TTCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCC-HHHH---HHHHHHHHH--HTCCCCCCHHH
T ss_pred CCCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCC-hhHH---HHHHHHHhh--cCccCCCCHHH
Confidence 4 4999999999999876 58899999999999999999876554321 1110 111111111 23566789999
Q ss_pred HHHHHHhCCCCeEEEEEccc
Q 041308 202 FKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~~~~ 221 (244)
+.++++++||+++++.....
T Consensus 199 ~~~~l~~aGf~~~~~~~~~~ 218 (273)
T 3bus_A 199 YESDVRQAELVVTSTVDISA 218 (273)
T ss_dssp HHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHcCCeEEEEEECcH
Confidence 99999999999999888653
No 28
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.81 E-value=2.8e-19 Score=149.29 Aligned_cols=164 Identities=11% Similarity=0.030 Sum_probs=122.1
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
.+.+++.++ .++..+|||||||+|.++..+++..+ .+ ++++|+ +.+++.+++. +++++..+|+.+ +|.
T Consensus 53 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~-v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~ 128 (287)
T 1kpg_A 53 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VN-VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDE 128 (287)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCC
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CE-EEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCC
Confidence 345677776 77788999999999999999997764 47 999999 9999888753 589999999843 444
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCC-----chHHhhhhhcccHhhhhhhccCceecC
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSN-----ESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
.|+|++..++||+++++...++++++++|||||++++.+...+.... .+.........+..... ..+++..++
T Consensus 129 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s 207 (287)
T 1kpg_A 129 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE-IFPGGRLPS 207 (287)
T ss_dssp CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH-TSTTCCCCC
T ss_pred CeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHhe-eCCCCCCCC
Confidence 59999999999997666679999999999999999999876543210 00000000111111111 134567779
Q ss_pred HHHHHHHHHhCCCCeEEEEEccc
Q 041308 199 EQEFKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~~~~ 221 (244)
.+++.++++++||+++++.....
T Consensus 208 ~~~~~~~l~~aGf~~~~~~~~~~ 230 (287)
T 1kpg_A 208 IPMVQECASANGFTVTRVQSLQP 230 (287)
T ss_dssp HHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHhCCcEEEEEEeCcH
Confidence 99999999999999999987643
No 29
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.81 E-value=1.2e-19 Score=148.61 Aligned_cols=149 Identities=16% Similarity=0.203 Sum_probs=118.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc--c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV--V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~--~ 125 (244)
..+++.++ ..+..+|||||||+|.++..+++.+ ..+ ++++|. +.+++.+++. .+++++.+|+.+. ++. .
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YAT-TDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSE-EEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCE-EEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 45666665 6677899999999999999999887 446 999999 9999888753 5799999998764 443 4
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|+|++..++||+++++...++++++++|||||++++.+....... ...+. ......++.++|.++
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~~~------~~~~~~~~~~~~~~~ 224 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDK------EDSSLTRSDIHYKRL 224 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEET------TTTEEEBCHHHHHHH
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------ceecc------cCCcccCCHHHHHHH
Confidence 999999999999988888999999999999999999987543321 01110 123456789999999
Q ss_pred HHhCCCCeEEEEEcc
Q 041308 206 GFSTGFPHLRAFISI 220 (244)
Q Consensus 206 l~~aGf~~~~~~~~~ 220 (244)
++++||+++++....
T Consensus 225 l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 225 FNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHTCCEEEEEECT
T ss_pred HHHCCCEEEEeeecC
Confidence 999999999987653
No 30
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.81 E-value=3.6e-20 Score=153.82 Aligned_cols=152 Identities=17% Similarity=0.204 Sum_probs=115.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCc--ceEEEecc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHV--VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~--~D~v~~~~ 132 (244)
+++..+|||||||+|.++..+++.+|..+ ++++|+ +.+++.+++. +++++..+|+.+. ++. .|+|++..
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 113 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAE-ITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCF 113 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEES
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEec
Confidence 67789999999999999999999999888 999999 9999888753 6899999999764 443 49999999
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC---CCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD---SNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
++||+++.+ .++++++++|||||++++.+...... +..+... .............++..++.+++.++|+++
T Consensus 114 ~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 188 (276)
T 3mgg_A 114 VLEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAI---EAWNCLIRVQAYMKGNSLVGRQIYPLLQES 188 (276)
T ss_dssp CGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHH---HHHHHHHHHHHHTTCCTTGGGGHHHHHHHT
T ss_pred hhhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHH---HHHHHHHHHHHhcCCCcchHHHHHHHHHHC
Confidence 999998864 88999999999999999988643221 1111111 111111100012345556778999999999
Q ss_pred CCCeEEEEEcc
Q 041308 210 GFPHLRAFISI 220 (244)
Q Consensus 210 Gf~~~~~~~~~ 220 (244)
||+++++....
T Consensus 189 Gf~~v~~~~~~ 199 (276)
T 3mgg_A 189 GFEKIRVEPRM 199 (276)
T ss_dssp TCEEEEEEEEE
T ss_pred CCCeEEEeeEE
Confidence 99999987653
No 31
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.81 E-value=1.1e-19 Score=148.02 Aligned_cols=156 Identities=13% Similarity=0.122 Sum_probs=119.4
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p 123 (244)
....+++.++ .++..+|||+|||+|.++..+++..+ + ++++|+ +.+++.+++. ++++++.+|+.+. ++
T Consensus 9 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 84 (239)
T 1xxl_A 9 SLGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--E-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP 84 (239)
T ss_dssp HHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC
T ss_pred CcchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCC
Confidence 3445666666 77889999999999999999998875 6 999999 9999888753 6799999999664 44
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHh-hhhhhccCceecCHH
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIF-VMTIYRAKGKHKTEQ 200 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~t~~ 200 (244)
. .|+|++..++||+++. ..++++++++|||||++++.+...+.. +.... +.... ... .......++.+
T Consensus 85 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~---~~~~~~~~~-~~~~~~~~~~~ 155 (239)
T 1xxl_A 85 DDSFDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPED---PVLDE---FVNHLNRLR-DPSHVRESSLS 155 (239)
T ss_dssp TTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSS---HHHHH---HHHHHHHHH-CTTCCCCCBHH
T ss_pred CCcEEEEEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCC---hhHHH---HHHHHHHhc-cccccCCCCHH
Confidence 3 4999999999999875 588999999999999999998866543 21111 11111 111 01224567899
Q ss_pred HHHHHHHhCCCCeEEEEEcc
Q 041308 201 EFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 201 e~~~ll~~aGf~~~~~~~~~ 220 (244)
+|.++++++||+++++....
T Consensus 156 ~~~~ll~~aGf~~~~~~~~~ 175 (239)
T 1xxl_A 156 EWQAMFSANQLAYQDIQKWN 175 (239)
T ss_dssp HHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEEeec
Confidence 99999999999988887653
No 32
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.81 E-value=2.6e-19 Score=150.79 Aligned_cols=162 Identities=13% Similarity=0.121 Sum_probs=124.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~- 124 (244)
+.+++.++ .++..+|||||||+|.++..+++.++ .+ ++++|+ +.+++.+++. +++++..+|+.+. +.
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 137 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VN-VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP 137 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence 44777776 77889999999999999999999876 77 999999 9999888753 3799999999655 43
Q ss_pred ceEEEeccccccCCH-------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhh-------hcccHhhhhhh
Q 041308 125 VDAIFMKWVLTTWTD-------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRAL-------LEGDIFVMTIY 190 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~-------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~-------~~~d~~~~~~~ 190 (244)
.|+|++..++||+++ +....+++++.++|||||++++.+...++.. ....... .+.+..... .
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~ 214 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKE--EAQELGLTSPMSLLRFIKFILTE-I 214 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHH--HHHHHTCCCCHHHHHHHHHHHHH-T
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCcc--chhhccccccccccchHHHHHHh-c
Confidence 599999999999954 5567899999999999999999988765431 0000000 000111111 1
Q ss_pred ccCceecCHHHHHHHHHhCCCCeEEEEEccce
Q 041308 191 RAKGKHKTEQEFKQLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 191 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 222 (244)
.+++..++.+++.++++++||+++++.....+
T Consensus 215 ~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~ 246 (302)
T 3hem_A 215 FPGGRLPRISQVDYYSSNAGWKVERYHRIGAN 246 (302)
T ss_dssp CTTCCCCCHHHHHHHHHHHTCEEEEEEECGGG
T ss_pred CCCCCCCCHHHHHHHHHhCCcEEEEEEeCchh
Confidence 45677889999999999999999999887644
No 33
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.80 E-value=4.1e-19 Score=150.35 Aligned_cols=161 Identities=9% Similarity=-0.022 Sum_probs=121.8
Q ss_pred cccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCC
Q 041308 47 RVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDM 118 (244)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~ 118 (244)
.......+.+++.++.+++..+|||+|||+|.++..+++.+ +.+ ++++|+ +.+++.++++ ++++++.+|+
T Consensus 99 ~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 176 (312)
T 3vc1_A 99 RLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSR-VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM 176 (312)
T ss_dssp HHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred hHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh
Confidence 33333345577776546778899999999999999999885 567 999999 9999888753 4799999999
Q ss_pred CCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCce
Q 041308 119 FKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGK 195 (244)
Q Consensus 119 ~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 195 (244)
.+. ++. .|+|++..++||++ ...+|+++.++|||||++++.+....+...... ......... ....
T Consensus 177 ~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~ 245 (312)
T 3vc1_A 177 LDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-----KWVSQINAH---FECN 245 (312)
T ss_dssp TSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-----HHHHHHHHH---HTCC
T ss_pred hcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-----HHHHHHHhh---hcCC
Confidence 774 553 49999999999995 468999999999999999999876655321110 011111111 1123
Q ss_pred ecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 196 HKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 196 ~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.++.++|.++++++||+++++..+.
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 6789999999999999999998875
No 34
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.80 E-value=3e-19 Score=146.52 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=117.4
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p 123 (244)
.+.+++.++ .++..+|||||||+|.++..+++.. +.+ ++++|+ +.+++.+++. ++++++.+|+.+. .+
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 101 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GIT-GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 101 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCe-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcC
Confidence 345666666 7778999999999999999999887 567 999999 9999888753 4799999999775 32
Q ss_pred c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 124 V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 124 ~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
. .|+|++..++||+++. .++|++++++|||||++++.+.............. .+. . ......++.++|
T Consensus 102 ~~fD~V~~~~~~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~--~~~-----~--~~~~~~~~~~~~ 170 (256)
T 1nkv_A 102 EKCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQ--ACG-----V--SSTSDFLTLPGL 170 (256)
T ss_dssp SCEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHH--TTT-----C--SCGGGSCCHHHH
T ss_pred CCCCEEEECCChHhcCCH--HHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHH--HHh-----c--ccccccCCHHHH
Confidence 2 4999999999999864 58899999999999999999876554422111100 000 0 112345789999
Q ss_pred HHHHHhCCCCeEEEEEc
Q 041308 203 KQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~ 219 (244)
.++++++||+++++...
T Consensus 171 ~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 171 VGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHCCCeeEEEEeC
Confidence 99999999999887654
No 35
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.80 E-value=1.2e-19 Score=143.84 Aligned_cols=145 Identities=15% Similarity=0.026 Sum_probs=115.1
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDD 140 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~ 140 (244)
..+|||+|||+|.++..+++. +.+ ++++|+ +.+++.+++. ++++++.+|+.+. ++. .|+|++..++||++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQ-IEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPG 118 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCC-EEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCe-EEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHH
Confidence 589999999999999999987 447 999999 9999988864 7899999999764 443 4999999999999876
Q ss_pred HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 141 ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
+...+|++++++|||||++++.+...+... . ... .......++.+++.++++++||+++++....
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--~-------~~~------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 119 ELPDALVALRMAVEDGGGLLMSFFSGPSLE--P-------MYH------PVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp THHHHHHHHHHTEEEEEEEEEEEECCSSCE--E-------ECC------SSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEccCCchh--h-------hhc------hhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 778999999999999999999876443310 0 000 0123456789999999999999999998765
Q ss_pred c-eeEEEee
Q 041308 221 I-FTLFLSS 228 (244)
Q Consensus 221 ~-~~~~~~~ 228 (244)
. +...+..
T Consensus 184 ~~p~~~l~~ 192 (203)
T 3h2b_A 184 RFPHAYLTA 192 (203)
T ss_dssp TSSEEEEEE
T ss_pred CCcchhhhh
Confidence 4 4444433
No 36
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.80 E-value=3.1e-19 Score=149.79 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=118.2
Q ss_pred HHHhccC----CCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC
Q 041308 54 TSVLDGY----DGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS 121 (244)
Q Consensus 54 ~~l~~~~----~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~ 121 (244)
+.+++.+ . +.+..+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.+++. ++++++.+|+.+.
T Consensus 68 ~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 68 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 4466666 4 6778899999999999999999886 457 999999 9999888753 5799999999774
Q ss_pred -CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecC
Q 041308 122 -IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 122 -~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
++. .|+|++..++||+++. ..+|++++++|||||++++.+........... ....+. . .......+
T Consensus 145 ~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~---~~~~~~---~---~~~~~~~~ 213 (297)
T 2o57_A 145 PCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKSS---IQPILD---R---IKLHDMGS 213 (297)
T ss_dssp SSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGG---GHHHHH---H---HTCSSCCC
T ss_pred CCCCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCchHH---HHHHHH---H---hcCCCCCC
Confidence 544 4999999999999884 68999999999999999999987654321110 011111 1 11123458
Q ss_pred HHHHHHHHHhCCCCeEEEEEcc
Q 041308 199 EQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.+++.++++++||+++++....
T Consensus 214 ~~~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 214 LGLYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HHHHHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHHHHHCCCeEEEEEECc
Confidence 9999999999999999988764
No 37
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.80 E-value=2e-19 Score=143.54 Aligned_cols=139 Identities=16% Similarity=0.071 Sum_probs=110.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCc--ceEEEeccccccCCH
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHV--VDAIFMKWVLTTWTD 139 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~--~D~v~~~~~lh~~~~ 139 (244)
+++..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.+++..++++..+|+.+..+. .|+|++..++||+++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFD-VDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCe-EEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCH
Confidence 456789999999999999999987 456 999999 99999998766788889998654232 499999999999998
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCC-CCeEEEEE
Q 041308 140 DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTG-FPHLRAFI 218 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~ 218 (244)
++...+|++++++|||||++++......... .+. .......++.++|.++++++| |+++++..
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----------~~~-----~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEG-----------RDK-----LARYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCE-----------ECT-----TSCEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCccc-----------ccc-----cchhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 8888999999999999999999754332210 000 011123468999999999999 99999876
Q ss_pred cc
Q 041308 219 SI 220 (244)
Q Consensus 219 ~~ 220 (244)
..
T Consensus 182 ~~ 183 (211)
T 3e23_A 182 SE 183 (211)
T ss_dssp EE
T ss_pred cc
Confidence 53
No 38
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.80 E-value=6.2e-19 Score=145.52 Aligned_cols=156 Identities=8% Similarity=0.009 Sum_probs=117.4
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAI 128 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v 128 (244)
.+.+++.++ .++..+|||||||+|.++..+++ ++.+ ++++|+ +.+++.+++..+++++.+|+.+. ++. .|+|
T Consensus 23 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 23 VNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLF-VYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp HHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCE-EEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEE
T ss_pred HHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCE-EEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEE
Confidence 444666665 66779999999999999999997 6677 999999 99999999888999999999764 443 4999
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS 208 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~ 208 (244)
++.+++||+++. ..++++++++|| ||++++.+...+... ..+.. ...... .. .......+.+++. ++++
T Consensus 99 ~~~~~l~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~~~-~~~~~---~~~~~~-~~--~~~~~~~~~~~~~-~l~~ 167 (261)
T 3ege_A 99 ISILAIHHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRLAQ-RIWLY---DYFPFL-WE--DALRFLPLDEQIN-LLQE 167 (261)
T ss_dssp EEESCGGGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGGCC-CCGGG---GTCHHH-HH--HHHTSCCHHHHHH-HHHH
T ss_pred EEcchHhhccCH--HHHHHHHHHHhC-CcEEEEEEcCCchhH-HHHHH---HHHHHH-hh--hhhhhCCCHHHHH-HHHH
Confidence 999999999765 589999999999 999999887543221 11111 011100 10 1123445678889 9999
Q ss_pred CCCCeEEEEEcccee
Q 041308 209 TGFPHLRAFISIIFT 223 (244)
Q Consensus 209 aGf~~~~~~~~~~~~ 223 (244)
+||+.+++.....+.
T Consensus 168 aGF~~v~~~~~~~p~ 182 (261)
T 3ege_A 168 NTKRRVEAIPFLLPH 182 (261)
T ss_dssp HHCSEEEEEECCEET
T ss_pred cCCCceeEEEecCCC
Confidence 999999988875443
No 39
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.80 E-value=7.6e-19 Score=148.90 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=122.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
.+.+++.++ ..+..+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.+++. +++++..+|+.+ +|.
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~ 154 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVN-VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAE 154 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCC
Confidence 345777776 7778899999999999999999886 457 999999 9999888753 569999999854 344
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCch----HHh-hhhhcccHhhhhhhccCceecC
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNES----QRT-RALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~----~~~-~~~~~~d~~~~~~~~~~~~~~t 198 (244)
.|+|++..++||+++++...+++++.++|||||++++.+...+...... ... ......+..... ..+++..++
T Consensus 155 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s 233 (318)
T 2fk8_A 155 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTE-IFPGGRLPS 233 (318)
T ss_dssp CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHH-TSTTCCCCC
T ss_pred CcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHh-cCCCCcCCC
Confidence 5999999999999876678999999999999999999988765421000 000 000011111111 134567789
Q ss_pred HHHHHHHHHhCCCCeEEEEEccc
Q 041308 199 EQEFKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~~~~ 221 (244)
.+++.++++++||+++++..+..
T Consensus 234 ~~~~~~~l~~aGf~~~~~~~~~~ 256 (318)
T 2fk8_A 234 TEMMVEHGEKAGFTVPEPLSLRP 256 (318)
T ss_dssp HHHHHHHHHHTTCBCCCCEECHH
T ss_pred HHHHHHHHHhCCCEEEEEEecch
Confidence 99999999999999999877653
No 40
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.79 E-value=1.1e-18 Score=141.95 Aligned_cols=142 Identities=15% Similarity=0.092 Sum_probs=110.5
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCc--ceEEEecccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHV--VDAIFMKWVLTT 136 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~ 136 (244)
++..+|||||||+|.++..+++. +.+ ++++|+ +.+++.+++. .+++++.+|+.+. ++. .|+|++.+++||
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYK-AVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 46689999999999999999987 456 999999 9999988865 7899999999764 443 499999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
+++. ..++++++++|+|||++++.+....... ... ....... .......++.+++.++++++||++++.
T Consensus 129 ~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~---~~~----~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 129 TEEP--LRALNEIKRVLKSDGYACIAILGPTAKP---REN----SYPRLYG--KDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp SSCH--HHHHHHHHHHEEEEEEEEEEEECTTCGG---GGG----GGGGGGT--CCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ccCH--HHHHHHHHHHhCCCeEEEEEEcCCcchh---hhh----hhhhhcc--ccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 9775 4889999999999999999886433221 110 1111111 122345578999999999999999998
Q ss_pred EEc
Q 041308 217 FIS 219 (244)
Q Consensus 217 ~~~ 219 (244)
..+
T Consensus 198 ~~~ 200 (242)
T 3l8d_A 198 IGV 200 (242)
T ss_dssp EEE
T ss_pred ecc
Confidence 755
No 41
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.79 E-value=7e-19 Score=144.40 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=116.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p 123 (244)
...+++.+...++..+|||+|||+|.++..+++..+. + ++++|+ +.+++.++++ .+++++.+|+.+. ++
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-Q-ITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ 111 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-E-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-e-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC
Confidence 3445565543667789999999999999999999875 7 999999 9999887753 4599999999653 44
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
. .|+|++..++||++. ..++++++++|||||++++.+........... ..+.+... .....+.++
T Consensus 112 ~~~fD~v~~~~~l~~~~~---~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~ 178 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNIGF---ERGMNEWSKYLKKGGFIAVSEASWFTSERPAE------IEDFWMDA----YPEISVIPT 178 (257)
T ss_dssp TTCEEEEEEESCSCCCCH---HHHHHHHHTTEEEEEEEEEEEEEESSSCCCHH------HHHHHHHH----CTTCCBHHH
T ss_pred CCCEEEEEecChHhhcCH---HHHHHHHHHHcCCCcEEEEEEeeccCCCChHH------HHHHHHHh----CCCCCCHHH
Confidence 3 499999999999943 47899999999999999999875443321111 11111111 123568999
Q ss_pred HHHHHHhCCCCeEEEEEccc
Q 041308 202 FKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~~~~ 221 (244)
+.++++++||+++++...+.
T Consensus 179 ~~~~l~~aGf~~v~~~~~~~ 198 (257)
T 3f4k_A 179 CIDKMERAGYTPTAHFILPE 198 (257)
T ss_dssp HHHHHHHTTEEEEEEEECCG
T ss_pred HHHHHHHCCCeEEEEEECCh
Confidence 99999999999999877653
No 42
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.79 E-value=3.4e-19 Score=148.92 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=115.3
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-ce
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-VD 126 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~D 126 (244)
+++.+....+..+|||||||+|.++..+++.+|. .+ ++++|+ +.+++.+++. .+++++.+|+.+. .+. .|
T Consensus 13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSK-YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCE-EEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 4444422567799999999999999999999985 77 999999 9999887753 3899999999874 444 59
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC-----C---CCCCchHHhhhhhcccHhhhhhhccCceecC
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL-----P---DDSNESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~-----~---~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
+|++..++||+++. ..++++++++|||||++++.+... . ++...+.......+...........+....+
T Consensus 92 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (284)
T 3gu3_A 92 IAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI 169 (284)
T ss_dssp EEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTG
T ss_pred EEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccH
Confidence 99999999999876 489999999999999999988751 0 1111011000111111111110122334456
Q ss_pred HHHHHHHHHhCCCCeEEEEEcc
Q 041308 199 EQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.+++.++|++|||+.+++....
T Consensus 170 ~~~l~~~l~~aGF~~v~~~~~~ 191 (284)
T 3gu3_A 170 GMKIPIYLSELGVKNIECRVSD 191 (284)
T ss_dssp GGTHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHHHHcCCCeEEEEEcC
Confidence 6789999999999999885543
No 43
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.79 E-value=3.2e-19 Score=143.58 Aligned_cols=172 Identities=12% Similarity=0.037 Sum_probs=116.8
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~ 124 (244)
+.+.+.+.++ +..+|||+|||+|.++..+++..+ + ++++|+ +.+++.++++ .+++++.+|+.+. ++.
T Consensus 28 ~~~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 101 (227)
T 1ve3_A 28 LEPLLMKYMK---KRGKVLDLACGVGGFSFLLEDYGF--E-VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFED 101 (227)
T ss_dssp HHHHHHHSCC---SCCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCT
T ss_pred HHHHHHHhcC---CCCeEEEEeccCCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCC
Confidence 3444555443 368999999999999999998877 6 999999 9999888753 6899999999874 443
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCc---hHHhhhhhcccHhhh---------hh-
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNE---SQRTRALLEGDIFVM---------TI- 189 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~---~~~~~~~~~~d~~~~---------~~- 189 (244)
.|+|++..++|+...++...++++++++|+|||++++.+...+..... ........+....+. ..
T Consensus 102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (227)
T 1ve3_A 102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFK 181 (227)
T ss_dssp TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-
T ss_pred CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEec
Confidence 499999999877777777899999999999999999987642211000 000000000000000 00
Q ss_pred -----hccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 190 -----YRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 190 -----~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
.......++ .++.++|+++||+.+++..+.....++...|
T Consensus 182 ~~~~~~~~~~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 182 SEQDSFRVRFNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp ----CCEEEEECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred cchhhheeehhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 000011122 4899999999999999999875555555443
No 44
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.79 E-value=3.9e-19 Score=144.85 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=112.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCc--ceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHV--VDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~--~D~v~~~~~ 133 (244)
.+..+|||||||+|.++..+++.. ..+ ++++|+ +.+++.++++ .+++++.+|+.+. .+. .|+|++..+
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 155 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL-FRE-VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 155 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT-CSE-EEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CCE-EEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcch
Confidence 357899999999999999999876 446 999999 9999888753 2588999998654 443 499999999
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
+||+++++...++++++++|||||++++.+...+.. . .++. ......++.+++.++++++||++
T Consensus 156 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~-------~~~~------~~~~~~~~~~~~~~~l~~aGf~~ 219 (241)
T 2ex4_A 156 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---V-------ILDD------VDSSVCRDLDVVRRIICSAGLSL 219 (241)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---E-------EEET------TTTEEEEBHHHHHHHHHHTTCCE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---c-------eecc------cCCcccCCHHHHHHHHHHcCCeE
Confidence 999999888899999999999999999998765431 0 1110 12344568999999999999999
Q ss_pred EEEEEcc
Q 041308 214 LRAFISI 220 (244)
Q Consensus 214 ~~~~~~~ 220 (244)
+++....
T Consensus 220 ~~~~~~~ 226 (241)
T 2ex4_A 220 LAEERQE 226 (241)
T ss_dssp EEEEECC
T ss_pred EEeeecC
Confidence 9987654
No 45
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.79 E-value=2.6e-19 Score=142.58 Aligned_cols=142 Identities=6% Similarity=-0.040 Sum_probs=107.9
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------------------CCeeEEe
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------------------PEVTHIG 115 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------------------~~i~~~~ 115 (244)
.+++.+. ..+..+|||+|||+|..+..++++. .+ ++++|+ +.|++.|+++ .+++++.
T Consensus 13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~g--~~-V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
T 1pjz_A 13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQG--YH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 88 (203)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHHC--CE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHCC--Ce-EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence 3444444 5667899999999999999999874 46 999999 9999988642 4789999
Q ss_pred CCCCCC-CC---cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc
Q 041308 116 GDMFKS-IH---VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 191 (244)
Q Consensus 116 gd~~~~-~p---~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 191 (244)
+|+++. .+ ..|+|++..++||+++++..+++++++++|||||+++++....+.... .
T Consensus 89 ~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~-------------------~ 149 (203)
T 1pjz_A 89 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL-------------------E 149 (203)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS-------------------S
T ss_pred CccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcccc-------------------C
Confidence 999875 33 259999999999999888888999999999999995544332221100 0
Q ss_pred cCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 192 AKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 192 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
......+.+++.+++++ ||++..+....
T Consensus 150 ~~~~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 150 GPPFSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp SCCCCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred CCCCCCCHHHHHHHhcC-CcEEEEecccc
Confidence 00112578999999988 99988877654
No 46
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.79 E-value=6.5e-19 Score=145.67 Aligned_cols=153 Identities=16% Similarity=0.097 Sum_probs=117.2
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~ 124 (244)
..+++.++..+++.+|||||||+|.++..+++. +..+ ++++|+ +.+++.+++. ++++++.+|+.+. ++.
T Consensus 35 ~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (267)
T 3kkz_A 35 LKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQ-VTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRN 112 (267)
T ss_dssp HHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCC
Confidence 345555543567789999999999999999988 7778 999999 9999888753 5799999999764 443
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
.|+|++..++||+.. ..++++++++|||||++++.+........... ..+.+... .....+.+++
T Consensus 113 ~~fD~i~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~ 179 (267)
T 3kkz_A 113 EELDLIWSEGAIYNIGF---ERGLNEWRKYLKKGGYLAVSECSWFTDERPAE------INDFWMDA----YPEIDTIPNQ 179 (267)
T ss_dssp TCEEEEEESSCGGGTCH---HHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH------HHHHHHHH----CTTCEEHHHH
T ss_pred CCEEEEEEcCCceecCH---HHHHHHHHHHcCCCCEEEEEEeeecCCCChHH------HHHHHHHh----CCCCCCHHHH
Confidence 499999999999943 57899999999999999999876543322111 11111111 1245678999
Q ss_pred HHHHHhCCCCeEEEEEccc
Q 041308 203 KQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~~~ 221 (244)
.++++++||+++++..++.
T Consensus 180 ~~~l~~aGf~~v~~~~~~~ 198 (267)
T 3kkz_A 180 VAKIHKAGYLPVATFILPE 198 (267)
T ss_dssp HHHHHHTTEEEEEEEECCG
T ss_pred HHHHHHCCCEEEEEEECCH
Confidence 9999999999999987653
No 47
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.79 E-value=2.6e-19 Score=145.27 Aligned_cols=164 Identities=12% Similarity=0.059 Sum_probs=117.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc-ceEEEe-ccccccCC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV-VDAIFM-KWVLTTWT 138 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~-~D~v~~-~~~lh~~~ 138 (244)
.+..+|||+|||+|.++..+++.++ + ++++|+ +.+++.+++. ++++++.+|+.+. .+. .|+|++ ..++||++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~-v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~ 115 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--D-TAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLK 115 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--E-EEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCC
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--c-EEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcC
Confidence 4568999999999999999999886 6 999999 9999988764 6899999999764 433 499995 55999985
Q ss_pred H-HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhh--------------------hhhcccHhhhhhhccC----
Q 041308 139 D-DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTR--------------------ALLEGDIFVMTIYRAK---- 193 (244)
Q Consensus 139 ~-~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~--------------------~~~~~d~~~~~~~~~~---- 193 (244)
+ ++...++++++++|+|||++++.+...++......... ........+.. ...+
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 194 (239)
T 3bxo_A 116 TTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTV-ADPGKGVR 194 (239)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEE-EETTTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEE-ecCCCcce
Confidence 4 56789999999999999999998765543311000000 00000111110 0001
Q ss_pred -------ceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecCc
Q 041308 194 -------GKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSN 231 (244)
Q Consensus 194 -------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~ 231 (244)
-+.++.++|+++|++|||++..+........+++++|+
T Consensus 195 ~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~ 239 (239)
T 3bxo_A 195 HFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA 239 (239)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred EEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence 13468999999999999988777666666777777764
No 48
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.79 E-value=6.1e-19 Score=146.76 Aligned_cols=141 Identities=17% Similarity=0.207 Sum_probs=110.3
Q ss_pred CCcceEEEEcCCc---cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC------------CC
Q 041308 64 KGVKRLVDVGGSA---GDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS------------IH 123 (244)
Q Consensus 64 ~~~~~vLDvG~G~---G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~------------~p 123 (244)
.+..+|||||||+ |.++..+.+.+|+.+ ++++|+ |.|++.+++. ++++++.+|+.++ ++
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~-v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDAR-VVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCE-EEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCE-EEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence 3458999999999 999888888889999 999999 9999988753 6899999999763 22
Q ss_pred --cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 --VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 --~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
..|+|++..++||+++++...+|++++++|+|||+|++.+...+. . ... ....+..... ......++.++
T Consensus 155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~-~--~~~---~~~~~~~~~~--~~~~~~~s~~e 226 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG-L--PAQ---QKLARITREN--LGEGWARTPEE 226 (274)
T ss_dssp TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS-C--HHH---HHHHHHHHHH--HSCCCCBCHHH
T ss_pred CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc-h--HHH---HHHHHHHHhc--CCCCccCCHHH
Confidence 359999999999999877789999999999999999999976532 1 111 1122222221 12356689999
Q ss_pred HHHHHHhCCCCeEE
Q 041308 202 FKQLGFSTGFPHLR 215 (244)
Q Consensus 202 ~~~ll~~aGf~~~~ 215 (244)
+.++| +||++++
T Consensus 227 i~~~l--~G~~l~~ 238 (274)
T 2qe6_A 227 IERQF--GDFELVE 238 (274)
T ss_dssp HHHTT--TTCEECT
T ss_pred HHHHh--CCCeEcc
Confidence 99999 6998775
No 49
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.79 E-value=1.3e-19 Score=139.84 Aligned_cols=147 Identities=14% Similarity=0.091 Sum_probs=116.4
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-CCCeeEEeCCCCCCCCc--ceEEEec
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-IPEVTHIGGDMFKSIHV--VDAIFMK 131 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-~~~i~~~~gd~~~~~p~--~D~v~~~ 131 (244)
+++.++ .++..+|||+|||+|.++..+++... + ++++|. +.+++.+++ .+++++..+| .+++. .|+|++.
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--K-LYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFA 82 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--E-EEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEE
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--e-EEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEc
Confidence 444444 66778999999999999999998874 6 999999 999988876 4789999999 33443 5999999
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
.++||+++. ..+++++.++|||||++++.+.........+ .....++.+++.++++ ||
T Consensus 83 ~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~l~--Gf 140 (170)
T 3i9f_A 83 NSFHDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTGIGP------------------PLSIRMDEKDYMGWFS--NF 140 (170)
T ss_dssp SCSTTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSS------------------CGGGCCCHHHHHHHTT--TE
T ss_pred cchhcccCH--HHHHHHHHHhcCCCCEEEEEEcCccccccCc------------------hHhhhcCHHHHHHHHh--Cc
Confidence 999999765 5899999999999999999987655432111 1123368999999998 99
Q ss_pred CeEEEEEccceeEEEeecC
Q 041308 212 PHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~ 230 (244)
+++++.........+++++
T Consensus 141 ~~~~~~~~~~~~~~l~~~~ 159 (170)
T 3i9f_A 141 VVEKRFNPTPYHFGLVLKR 159 (170)
T ss_dssp EEEEEECSSTTEEEEEEEE
T ss_pred EEEEccCCCCceEEEEEec
Confidence 9999999886555555554
No 50
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.78 E-value=5e-19 Score=143.61 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=113.3
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~- 124 (244)
..++.... +++ .+|||+|||+|.++..+++ +..+ ++++|+ +.+++.+++. .+++++.+|+.+..+.
T Consensus 57 ~~~~~~~~-~~~-~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 131 (235)
T 3lcc_A 57 VHLVDTSS-LPL-GRALVPGCGGGHDVVAMAS--PERF-VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTE 131 (235)
T ss_dssp HHHHHTTC-SCC-EEEEEETCTTCHHHHHHCB--TTEE-EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSS
T ss_pred HHHHHhcC-CCC-CCEEEeCCCCCHHHHHHHh--CCCe-EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCC
Confidence 34444444 444 5999999999999999976 4567 999999 9999888753 4599999999886443
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK 203 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~ 203 (244)
.|+|++..++||+++++...++++++++|||||++++.+.........+ ...++.+++.
T Consensus 132 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--------------------~~~~~~~~~~ 191 (235)
T 3lcc_A 132 LFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGP--------------------PYKVDVSTFE 191 (235)
T ss_dssp CEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCS--------------------SCCCCHHHHH
T ss_pred CeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCC--------------------CccCCHHHHH
Confidence 5999999999999977788999999999999999999876544321110 1125789999
Q ss_pred HHHHhCCCCeEEEEEccc
Q 041308 204 QLGFSTGFPHLRAFISII 221 (244)
Q Consensus 204 ~ll~~aGf~~~~~~~~~~ 221 (244)
++++++||+++++.....
T Consensus 192 ~~l~~~Gf~~~~~~~~~~ 209 (235)
T 3lcc_A 192 EVLVPIGFKAVSVEENPH 209 (235)
T ss_dssp HHHGGGTEEEEEEEECTT
T ss_pred HHHHHcCCeEEEEEecCC
Confidence 999999999999987654
No 51
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.78 E-value=9e-19 Score=145.81 Aligned_cols=168 Identities=14% Similarity=0.037 Sum_probs=120.5
Q ss_pred cccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc-
Q 041308 49 FVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~- 124 (244)
.....+.+++.++ ..+..+|||||||+|.++..+++ +..+ ++++|+ +.|++.+++. +++++..+|+.+. ++.
T Consensus 42 ~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~ 117 (279)
T 3ccf_A 42 VWQYGEDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAE-VLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKP 117 (279)
T ss_dssp CSSSCCHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCE-EEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSC
T ss_pred HHHHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCe-EEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCC
Confidence 3445566777776 66778999999999999999998 6677 999999 9999988764 7899999999764 433
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhh--hhhccCceecCHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVM--TIYRAKGKHKTEQEF 202 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~t~~e~ 202 (244)
.|+|++..++||+++. ..++++++++|||||++++........ ................ .........++.+++
T Consensus 118 fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (279)
T 3ccf_A 118 LDAVFSNAMLHWVKEP--EAAIASIHQALKSGGRFVAEFGGKGNI--KYILEALYNALETLGIHNPQALNPWYFPSIGEY 193 (279)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECTTTT--HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHH
T ss_pred cCEEEEcchhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCCcch--HHHHHHHHHHHHhcCCccccCcCceeCCCHHHH
Confidence 4999999999999875 488999999999999999976543221 1111110000000000 000011235689999
Q ss_pred HHHHHhCCCCeEEEEEccceeE
Q 041308 203 KQLGFSTGFPHLRAFISIIFTL 224 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~~~~~~ 224 (244)
.++|+++||+++++.....+..
T Consensus 194 ~~~l~~aGf~~~~~~~~~~~~~ 215 (279)
T 3ccf_A 194 VNILEKQGFDVTYAALFNRPTT 215 (279)
T ss_dssp HHHHHHHTEEEEEEEEEECCEE
T ss_pred HHHHHHcCCEEEEEEEeccccc
Confidence 9999999999998877655443
No 52
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.78 E-value=6e-19 Score=148.84 Aligned_cols=168 Identities=14% Similarity=0.049 Sum_probs=119.3
Q ss_pred CCCcceEEEEcCCccHHHHHHH-HHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIIL-QKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~ 131 (244)
.++..+|||||||+|.++..++ ...|+.+ ++++|+ +.+++.++++ .+++++.+|+.+. ++. .|+|++.
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 194 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQ-LVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSN 194 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCE-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCe-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEEC
Confidence 4667899999999999999986 5678888 999999 9999888753 3599999999775 443 4999999
Q ss_pred cccccCCHH-HHHHHHHHHHHHcCCCCEEEEecccCCCCCCc--hHHh-hhh----hcccHhhhh-hhccCceecCHHHH
Q 041308 132 WVLTTWTDD-ECKLIMENYYKALLAGRKLIACEPVLPDDSNE--SQRT-RAL----LEGDIFVMT-IYRAKGKHKTEQEF 202 (244)
Q Consensus 132 ~~lh~~~~~-~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~--~~~~-~~~----~~~d~~~~~-~~~~~~~~~t~~e~ 202 (244)
.++||+++. ....++++++++|||||++++.+...+..... .|.. ... ......... ........++.+++
T Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 999999654 44568999999999999999988765443211 1100 000 000000000 00011244799999
Q ss_pred HHHHHhCCCCeEEEEEccc-eeEEEeecCc
Q 041308 203 KQLGFSTGFPHLRAFISII-FTLFLSSKSN 231 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~~~-~~~~~~~~~~ 231 (244)
.++++++||+++++..... ....++++|+
T Consensus 275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 9999999999999986543 3445666665
No 53
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.78 E-value=9.5e-19 Score=142.39 Aligned_cols=149 Identities=13% Similarity=0.040 Sum_probs=108.9
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCCCCc--ceEEEeccccccCC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKSIHV--VDAIFMKWVLTTWT 138 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~~p~--~D~v~~~~~lh~~~ 138 (244)
.+..+|||||||+|.++..+++.++ + ++++|+ +.+++.+++. .+++++.+|+.+..+. .|+|++.+++||++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--D-ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--C-EEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--c-EEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhc
Confidence 3467999999999999999998876 5 999999 9999888764 2899999999776443 49999999999998
Q ss_pred HHHHHHHHHHHH-HHcCCCCEEEEecccCCCCCCchHHhhhhhccc----HhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 139 DDECKLIMENYY-KALLAGRKLIACEPVLPDDSNESQRTRALLEGD----IFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 139 ~~~~~~~l~~~~-~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d----~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
+. ..+|++++ ++|||||++++.+...... ............ .............++.+++.++++++||++
T Consensus 118 ~~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 193 (250)
T 2p7i_A 118 DP--VALLKRINDDWLAEGGRLFLVCPNANAV--SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV 193 (250)
T ss_dssp SH--HHHHHHHHHTTEEEEEEEEEEEECTTCH--HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred CH--HHHHHHHHHHhcCCCCEEEEEcCChHHH--HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeE
Confidence 76 58999999 9999999999987533211 000000000000 000000012345679999999999999999
Q ss_pred EEEEEc
Q 041308 214 LRAFIS 219 (244)
Q Consensus 214 ~~~~~~ 219 (244)
+++...
T Consensus 194 ~~~~~~ 199 (250)
T 2p7i_A 194 TYRSGI 199 (250)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 998754
No 54
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.77 E-value=2e-18 Score=150.25 Aligned_cols=144 Identities=15% Similarity=0.159 Sum_probs=113.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC--------------CCeeEEeCCCCC-------
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI--------------PEVTHIGGDMFK------- 120 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~--------------~~i~~~~gd~~~------- 120 (244)
.+..+|||+|||+|.++..+++.. |..+ ++++|+ +.+++.++++ ++++++.+|+.+
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGK-VIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCE-EEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 456899999999999999999986 7778 999999 9999988764 689999999976
Q ss_pred CCCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecC
Q 041308 121 SIHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKT 198 (244)
Q Consensus 121 ~~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t 198 (244)
+++. .|+|++..++||+++. ..+|++++++|||||++++.+...+.... ... ..+..... ...+..++
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~-----~~~~~~~~--~~~~~~~~ 230 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRDGGELYFSDVYADRRLS-EAA-----QQDPILYG--ECLGGALY 230 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEESSCCC-HHH-----HHCHHHHH--TTCTTCCB
T ss_pred CCCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCCCCEEEEEEeccccccC-HhH-----hhhHHHhh--cccccCCC
Confidence 4444 4999999999999875 58999999999999999999876554321 111 11111111 22345677
Q ss_pred HHHHHHHHHhCCCCeEEEEE
Q 041308 199 EQEFKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 199 ~~e~~~ll~~aGf~~~~~~~ 218 (244)
.++|.++|+++||+.+++..
T Consensus 231 ~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 231 LEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe
Confidence 89999999999999887654
No 55
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.77 E-value=3.4e-18 Score=138.08 Aligned_cols=150 Identities=17% Similarity=0.086 Sum_probs=109.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCC-CCc--ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKS-IHV--VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~-~p~--~D~v 128 (244)
++..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.+++. .++++..+|+.+. ++. .|+|
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYS-VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCe-EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 46789999999999999999987 457 999999 9898887752 2589999999764 443 4999
Q ss_pred EeccccccCCHH-HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhh--h----h-------ccCc
Q 041308 129 FMKWVLTTWTDD-ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMT--I----Y-------RAKG 194 (244)
Q Consensus 129 ~~~~~lh~~~~~-~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~--~----~-------~~~~ 194 (244)
++..++||+++. +...++++++++|||||++++.+....... +.... .......... . . ....
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL--KLYRK-RYLHDFPITKEEGSFLARDPETGETEFIA 182 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS--HHHHH-HHHHHHHHHCSTTEEEEECTTTCCEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH--HHHHH-HhhhhccchhhhcceEecccccCCcceee
Confidence 999999999754 466899999999999999999987654331 11110 0000110000 0 0 0012
Q ss_pred eecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
..++.++|.++++++||+++++...
T Consensus 183 ~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 183 HHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp ECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred EeCCHHHHHHHHHHcCCEEEEEEec
Confidence 4579999999999999999998653
No 56
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.77 E-value=6.4e-19 Score=147.05 Aligned_cols=158 Identities=15% Similarity=0.068 Sum_probs=113.8
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC--Cc
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI--HV 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~--p~ 124 (244)
.+++.++ . +..+|||||||+|.++..+++. ..+ ++++|+ +.+++.+++. ++++++.+|+.+.. +.
T Consensus 60 ~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 60 RVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQ-VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 4555554 3 3579999999999999999987 457 999999 9999988853 67999999997652 33
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhh------hhccCcee
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMT------IYRAKGKH 196 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~~ 196 (244)
.|+|++..++||+++. ..++++++++|||||++++.+...... ................ ........
T Consensus 135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGL---LMHNMVAGNFDYVQAGMPKKKKRTLSPDYP 209 (285)
T ss_dssp SCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHH---HHHHHHTTCHHHHHTTCCCC----CCCSCC
T ss_pred CCceEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchH---HHHHHHhcCHHHHhhhccccccccCCCCCC
Confidence 4999999999999876 589999999999999999987643211 0000000000000000 00112355
Q ss_pred cCHHHHHHHHHhCCCCeEEEEEccce
Q 041308 197 KTEQEFKQLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 197 ~t~~e~~~ll~~aGf~~~~~~~~~~~ 222 (244)
++.+++.++++++||+++++..+...
T Consensus 210 ~~~~~l~~~l~~aGf~v~~~~~~~~~ 235 (285)
T 4htf_A 210 RDPTQVYLWLEEAGWQIMGKTGVRVF 235 (285)
T ss_dssp BCHHHHHHHHHHTTCEEEEEEEESSS
T ss_pred CCHHHHHHHHHHCCCceeeeeeEEEe
Confidence 78999999999999999999887543
No 57
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.77 E-value=2.2e-18 Score=141.53 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=113.2
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCCCc--ceEE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSIHV--VDAI 128 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~p~--~D~v 128 (244)
...+++.++ ..+..+|||+|||+|.++..+++.+|..+ ++++|+ +.+++.+++. ++++++.+|+.+..+. .|+|
T Consensus 22 ~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 99 (259)
T 2p35_A 22 ARDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNV-ITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLL 99 (259)
T ss_dssp HHHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTS-EEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEE
T ss_pred HHHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEE
Confidence 345666666 66778999999999999999999998888 999999 9999988764 7899999999764333 4999
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccH--hhhhhh---ccCceecCHHHHH
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDI--FVMTIY---RAKGKHKTEQEFK 203 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~--~~~~~~---~~~~~~~t~~e~~ 203 (244)
++..++||+++. ..++++++++|||||++++........ +........... +..... ......++.++|.
T Consensus 100 ~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (259)
T 2p35_A 100 YANAVFQWVPDH--LAVLSQLMDQLESGGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYF 174 (259)
T ss_dssp EEESCGGGSTTH--HHHHHHHGGGEEEEEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHH
T ss_pred EEeCchhhCCCH--HHHHHHHHHhcCCCeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHH
Confidence 999999999764 588999999999999999987532211 111111011000 000000 0123457899999
Q ss_pred HHHHhCCCCeE
Q 041308 204 QLGFSTGFPHL 214 (244)
Q Consensus 204 ~ll~~aGf~~~ 214 (244)
++|+++||++.
T Consensus 175 ~~l~~aGf~v~ 185 (259)
T 2p35_A 175 NALSPKSSRVD 185 (259)
T ss_dssp HHHGGGEEEEE
T ss_pred HHHHhcCCceE
Confidence 99999999743
No 58
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.76 E-value=1.9e-18 Score=141.60 Aligned_cols=160 Identities=13% Similarity=0.027 Sum_probs=112.1
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCc--ce
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHV--VD 126 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~--~D 126 (244)
..+.+.++ ..+..+|||+|||+|.++..+++..+. + ++++|+ +.+++.+++. .+++++.+|+.+. ++. .|
T Consensus 34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 110 (253)
T 3g5l_A 34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-K-VLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYN 110 (253)
T ss_dssp HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-E-EEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEE
T ss_pred HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-E-EEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeE
Confidence 34566665 556789999999999999999998664 6 999999 9999888754 6899999999664 443 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC------------CCCCchHHhhhhhcccH-----hhhhh
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP------------DDSNESQRTRALLEGDI-----FVMTI 189 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~------------~~~~~~~~~~~~~~~d~-----~~~~~ 189 (244)
+|++..++||+++. ..++++++++|||||++++...... .... .........++. ....
T Consensus 111 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 186 (253)
T 3g5l_A 111 VVLSSLALHYIASF--DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGN-KLHWPVDRYFNESMRTSHFLG- 186 (253)
T ss_dssp EEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCC-EEEEEECCTTCCCEEEEEETT-
T ss_pred EEEEchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCc-eEEEEeccccccceEEEeecc-
Confidence 99999999999764 5899999999999999999643210 0000 000000000000 0000
Q ss_pred hccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 190 YRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 190 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.......+|.++|.++|++|||+++++....
T Consensus 187 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 187 EDVQKYHRTVTTYIQTLLKNGFQINSVIEPE 217 (253)
T ss_dssp EEEEEECCCHHHHHHHHHHTTEEEEEEECCC
T ss_pred ccCccEecCHHHHHHHHHHcCCeeeeeecCC
Confidence 0001122399999999999999999987654
No 59
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.76 E-value=2.3e-18 Score=137.99 Aligned_cols=144 Identities=12% Similarity=0.074 Sum_probs=105.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCC-CC--cceE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKS-IH--VVDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~-~p--~~D~ 127 (244)
..+..+|||+|||+|.++..+++..+..+ ++++|+ +.+++.++++ .+++++.+|+... .+ ..|+
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 105 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQ-ITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDA 105 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSE-EEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCE-EEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCE
Confidence 34568999999999999999999888778 999999 9999888753 2899999998544 33 2599
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH----
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK---- 203 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~---- 203 (244)
|++..++||+++++..+++++++++|||||.+++..... +...+.. +...... .......++.+++.
T Consensus 106 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~-------~~~~~~~-~~~~~~~-~~~~~~~~~~~~l~~~~~ 176 (217)
T 3jwh_A 106 ATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIE-------YNVKFAN-LPAGKLR-HKDHRFEWTRSQFQNWAN 176 (217)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHH-------HHHHTC-------------CCSCBCHHHHHHHHH
T ss_pred EeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcc-------cchhhcc-ccccccc-ccccccccCHHHHHHHHH
Confidence 999999999999888899999999999999777755411 1000000 0000000 01223346888888
Q ss_pred HHHHhCCCCeEEE
Q 041308 204 QLGFSTGFPHLRA 216 (244)
Q Consensus 204 ~ll~~aGf~~~~~ 216 (244)
++++++||++...
T Consensus 177 ~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 177 KITERFAYNVQFQ 189 (217)
T ss_dssp HHHHHSSEEEEEC
T ss_pred HHHHHcCceEEEE
Confidence 9999999987554
No 60
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.76 E-value=3.1e-18 Score=140.75 Aligned_cols=149 Identities=10% Similarity=-0.012 Sum_probs=106.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc--ceEEEeccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV--VDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~--~D~v~~~~~ 133 (244)
.++..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.+++. ++++++.+|+.+. ++. .|+|++..+
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 113 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYR-YIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHL 113 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCE-EEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCc
Confidence 567789999999999999999986 356 999999 9999887653 6899999999664 444 499999999
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhcc---CceecCHHHHHHHHHhCC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA---KGKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~t~~e~~~ll~~aG 210 (244)
+||+++. ..++++++++|||||++++. ...++ ..+.......+....... ... ....++.+++.++++++|
T Consensus 114 l~~~~~~--~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~G 187 (263)
T 2yqz_A 114 WHLVPDW--PKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEE-GFPVERGLHAKRLKEVEEALRRLG 187 (263)
T ss_dssp GGGCTTH--HHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHH-TCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred hhhcCCH--HHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHh-CCCcccccccCCHHHHHHHHHHcC
Confidence 9999864 58999999999999999988 22111 112000000111111110 001 123467889999999999
Q ss_pred CCeEEEEEcc
Q 041308 211 FPHLRAFISI 220 (244)
Q Consensus 211 f~~~~~~~~~ 220 (244)
|+++.+....
T Consensus 188 f~~~~~~~~~ 197 (263)
T 2yqz_A 188 LKPRTREVAR 197 (263)
T ss_dssp CCCEEEEEEE
T ss_pred CCcceEEEee
Confidence 9988775544
No 61
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.76 E-value=2.2e-18 Score=144.83 Aligned_cols=177 Identities=10% Similarity=0.046 Sum_probs=116.0
Q ss_pred HHHHHHHHcc-cccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------
Q 041308 39 GLMRKAMSRV-FVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------- 108 (244)
Q Consensus 39 ~~f~~~~~~~-~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------- 108 (244)
..|+..+... .......+++.++ .. ..+|||||||+|.++..+++. ..+ ++++|+ +.+++.++++
T Consensus 57 ~~y~~~~~~~~~~~~~~~~~~~~~-~~-~~~vLDlGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~ 131 (299)
T 3g2m_A 57 DTYRDLIQDADGTSEAREFATRTG-PV-SGPVLELAAGMGRLTFPFLDL--GWE-VTALELSTSVLAAFRKRLAEAPADV 131 (299)
T ss_dssp ---------CCCHHHHHHHHHHHC-CC-CSCEEEETCTTTTTHHHHHTT--TCC-EEEEESCHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHhcccCccHHHHHHHHhhC-CC-CCcEEEEeccCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHhhccccc
Confidence 3455554432 2334555666665 33 349999999999999999987 457 999999 9999988863
Q ss_pred -CCeeEEeCCCCCC-CCc-ceEEEe-ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC----Cc--hHHhhh
Q 041308 109 -PEVTHIGGDMFKS-IHV-VDAIFM-KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS----NE--SQRTRA 178 (244)
Q Consensus 109 -~~i~~~~gd~~~~-~p~-~D~v~~-~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~----~~--~~~~~~ 178 (244)
.+++++.+|+.+. ++. .|+|++ ..++|++++++...+|++++++|||||+|++.....+... .. .+....
T Consensus 132 ~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (299)
T 3g2m_A 132 RDRCTLVQGDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRS 211 (299)
T ss_dssp HTTEEEEECBTTBCCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC--------
T ss_pred ccceEEEeCchhcCCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCC
Confidence 5799999999874 444 498885 4778888888888999999999999999999765432110 00 000000
Q ss_pred hh-------------cccHhhhh---------hhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 179 LL-------------EGDIFVMT---------IYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 179 ~~-------------~~d~~~~~---------~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.. ...+.... ......+.++.+++.++|++|||+++++..+.
T Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 212 GRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp -----CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CcEEEEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 00 00000000 00011235699999999999999999998875
No 62
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.76 E-value=4.3e-18 Score=138.36 Aligned_cols=179 Identities=14% Similarity=0.029 Sum_probs=112.7
Q ss_pred chHHHHHHHHHHcccc----cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-
Q 041308 35 PKMNGLMRKAMSRVFV----PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI- 108 (244)
Q Consensus 35 ~~~~~~f~~~~~~~~~----~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~- 108 (244)
++.+..|+..+..... ...+.+.+.++ ..+..+|||+|||+|.++..+++... .+ ++++|+ +.+++.+++.
T Consensus 10 ~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~-v~~vD~s~~~~~~a~~~~ 86 (243)
T 3bkw_A 10 PDFFAGYSQLGRSIEGLDGAAEWPALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SY-VLGLDLSEKMLARARAAG 86 (243)
T ss_dssp ---------------CGGGCTTHHHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHTS
T ss_pred HHHHHHHHHhccCCccHHHHHhHHHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-Ce-EEEEcCCHHHHHHHHHhc
Confidence 3344555554433221 12234555555 55678999999999999999998743 26 999999 9999888764
Q ss_pred --CCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC--CCCCchHHhh----
Q 041308 109 --PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP--DDSNESQRTR---- 177 (244)
Q Consensus 109 --~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~--~~~~~~~~~~---- 177 (244)
.+++++.+|+.+. ++. .|+|++..++||+++. ..++++++++|+|||++++...... ......+...
T Consensus 87 ~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (243)
T 3bkw_A 87 PDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDV--ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGR 164 (243)
T ss_dssp CSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSC
T ss_pred ccCCceEEEcChhhccCCCCCceEEEEeccccccchH--HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCc
Confidence 4799999999764 443 4999999999999864 5899999999999999999764211 0000000000
Q ss_pred ----hhhcc-----cHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 178 ----ALLEG-----DIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 178 ----~~~~~-----d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
..... ...... .......++.++|.++|+++||+++++...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 165 RTWPIDRYLVEGPRKTDWLA-KGVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EEEEECCTTCCEEECTTHHH-HSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred eEEeecccccccceeeeecc-CceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 00000 000000 011233468999999999999999998765
No 63
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.76 E-value=3.7e-18 Score=139.22 Aligned_cols=150 Identities=12% Similarity=0.004 Sum_probs=110.9
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCc-------ceEEEe
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHV-------VDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~-------~D~v~~ 130 (244)
..+..+|||+|||+|.++..+++.++ + ++++|+ +.+++.++++ .+++++.+|+.+. .+. .|+|++
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~ 130 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--R-VIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYM 130 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--C-EEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--C-EEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEE
Confidence 45678999999999999999999987 6 999999 9999888753 5899999999874 221 489999
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhc---c--cHhhhhhhccCceecCHHHHHHH
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLE---G--DIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~---~--d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
..++||+++++...++++++++|||||++++.+...++. ......... . ..............++.+++.++
T Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (245)
T 3ggd_A 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCI---DFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELY 207 (245)
T ss_dssp ESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHH---HHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHH
T ss_pred cchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcccc---HHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHH
Confidence 999999998778899999999999999999999854432 111000000 0 00000000111234689999999
Q ss_pred HHhCCCCeEEEEEcc
Q 041308 206 GFSTGFPHLRAFISI 220 (244)
Q Consensus 206 l~~aGf~~~~~~~~~ 220 (244)
| +||+++....+.
T Consensus 208 ~--aGf~~~~~~~~~ 220 (245)
T 3ggd_A 208 F--PDFEILSQGEGL 220 (245)
T ss_dssp C--TTEEEEEEECCB
T ss_pred h--CCCEEEeccccc
Confidence 9 999999876654
No 64
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.75 E-value=6e-18 Score=133.27 Aligned_cols=143 Identities=13% Similarity=0.037 Sum_probs=111.7
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p~- 124 (244)
+.+++.++ ..+..+|||+|||+|.++..+++. +.+ ++++|. +.+++.+++. +++++..+|+.+. ++.
T Consensus 22 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 97 (199)
T 2xvm_A 22 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYD-VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ 97 (199)
T ss_dssp HHHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCC
T ss_pred HHHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCC
Confidence 34556665 556689999999999999999987 457 999999 9999888753 4799999998764 433
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++..++||+++++...+++++.++|+|||++++++.........+ ......++.+++++
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~ 160 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-----------------VGFPFAFKEGELRR 160 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC-----------------SCCSCCBCTTHHHH
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC-----------------CCCCCccCHHHHHH
Confidence 4999999999999977778999999999999999999887654331100 11233467889999
Q ss_pred HHHhCCCCeEEEEEc
Q 041308 205 LGFSTGFPHLRAFIS 219 (244)
Q Consensus 205 ll~~aGf~~~~~~~~ 219 (244)
++++ |++++....
T Consensus 161 ~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 161 YYEG--WERVKYNED 173 (199)
T ss_dssp HTTT--SEEEEEECC
T ss_pred HhcC--CeEEEeccc
Confidence 9976 999887644
No 65
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.75 E-value=2.3e-18 Score=141.88 Aligned_cols=97 Identities=14% Similarity=0.049 Sum_probs=84.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEEEeccccccCCHH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDD 140 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~ 140 (244)
...+|||||||+|.++..+++.+. + ++++|+ +.|++.|++.++++++.+|+.+. ++. .|+|++..++|+++.+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~-v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~ 115 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--R-VHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD 115 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--E-EEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--E-EEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH
Confidence 457999999999999999998763 5 999999 99999999999999999999764 665 3999999999988754
Q ss_pred HHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 141 ECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
+++++++|+|||||+|++.....+
T Consensus 116 ---~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 116 ---RFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp ---HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred ---HHHHHHHHHcCCCCEEEEEECCCC
Confidence 689999999999999999876543
No 66
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.75 E-value=1.2e-18 Score=139.81 Aligned_cols=166 Identities=13% Similarity=-0.001 Sum_probs=116.0
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-----CC-c-ce
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-----IH-V-VD 126 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-----~p-~-~D 126 (244)
.+++.+. ..+..+|||+|||+|.++..+++. +.+ ++++|+ +.+++.+++..++.+..+|+.+. .+ . .|
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIE-AVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCE-EEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence 3555554 445699999999999999999987 457 999999 99999998888888998887542 22 2 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhh----hccCceecCHHHH
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTI----YRAKGKHKTEQEF 202 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~t~~e~ 202 (244)
+|++..++| ..+. ..++++++++|||||++++.+............ ..+........ .......++.++|
T Consensus 119 ~v~~~~~l~-~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (227)
T 3e8s_A 119 LICANFALL-HQDI--IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASW 192 (227)
T ss_dssp EEEEESCCC-SSCC--HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHH
T ss_pred EEEECchhh-hhhH--HHHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHH
Confidence 999999999 4443 589999999999999999988754333211000 00111000000 0011245699999
Q ss_pred HHHHHhCCCCeEEEEEccc------eeEEEeecC
Q 041308 203 KQLGFSTGFPHLRAFISII------FTLFLSSKS 230 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~~~------~~~~~~~~~ 230 (244)
.++|+++||+++++..... ...+++++|
T Consensus 193 ~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k 226 (227)
T 3e8s_A 193 LNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAER 226 (227)
T ss_dssp HHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEE
T ss_pred HHHHHHcCCeEEEEecCCCCCCCCceeEEEEeec
Confidence 9999999999999876321 145666665
No 67
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=144.39 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=106.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------------------------------
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------------------------------- 108 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------------------------------- 108 (244)
.+..+|||||||+|.++..+++.++..+ ++++|+ +.+++.|+++
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~-v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSR-MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSE-EEEEESCHHHHHHHHHTC---------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 3568999999999999999999998888 999999 9999888653
Q ss_pred ------------------------------CCeeEEeCCCCCCC------Cc--ceEEEeccccccC----CHHHHHHHH
Q 041308 109 ------------------------------PEVTHIGGDMFKSI------HV--VDAIFMKWVLTTW----TDDECKLIM 146 (244)
Q Consensus 109 ------------------------------~~i~~~~gd~~~~~------p~--~D~v~~~~~lh~~----~~~~~~~~l 146 (244)
.+++|..+|+.... +. .|+|++..+++|+ .++...+++
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 37999999998642 22 4999999999776 566788999
Q ss_pred HHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh--CCCCeEEEEEc
Q 041308 147 ENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS--TGFPHLRAFIS 219 (244)
Q Consensus 147 ~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~ 219 (244)
++++++|+|||+|++...... .+............ ........++++.++|.+ +||+.+++...
T Consensus 204 ~~~~~~LkpGG~lil~~~~~~------~y~~~~~~~~~~~~---~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEPQPWS------SYGKRKTLTETIYK---NYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHHEEEEEEEEEECCCHH------HHHTTTTSCHHHHH---HHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHHhCCCcEEEEecCCch------hhhhhhcccHHHHh---hhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 999999999999998532111 01010011111000 111233457899999999 99998887544
No 68
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.75 E-value=3.8e-18 Score=136.83 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=105.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCC-CCc--ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKS-IHV--VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~-~p~--~D~v 128 (244)
.+..+|||+|||+|.++..+++..|..+ ++++|+ +.+++.++++ .+++++.+|+... .+. .|+|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQ-ITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCE-EEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 4468999999999999999999888778 999999 9999988763 1899999999544 322 5999
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH----H
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK----Q 204 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~----~ 204 (244)
++..++||+++++..+++++++++|||||.+++......... +.. ....... +......++.+++. +
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~-------~~~-~~~~~~~-~~~~~~~~~~~~l~~~~~~ 177 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFH-------YGN-LFEGNLR-HRDHRFEWTRKEFQTWAVK 177 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGC-------CCC-T-----G-GGCCTTSBCHHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhh-------hcc-cCccccc-ccCceeeecHHHHHHHHHH
Confidence 999999999998888999999999999997766543211000 000 0000000 01223346888888 8
Q ss_pred HHHhCCCCeEEE
Q 041308 205 LGFSTGFPHLRA 216 (244)
Q Consensus 205 ll~~aGf~~~~~ 216 (244)
+++++||++...
T Consensus 178 l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 178 VAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHTEEEEEE
T ss_pred HHHHCCcEEEEE
Confidence 899999976554
No 69
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.74 E-value=6.1e-18 Score=137.46 Aligned_cols=164 Identities=12% Similarity=0.003 Sum_probs=112.2
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-ceEEEecc-ccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-VDAIFMKW-VLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~D~v~~~~-~lh 135 (244)
+..+|||+|||+|.++..+++.. .+ ++++|. +.+++.+++. .+++++.+|+.+. ++. .|+|++.. ++|
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~--~~-~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF--KN-TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SE-EEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC--Cc-EEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCcccc
Confidence 56899999999999999999874 46 999999 9999988764 2799999998764 443 49999998 999
Q ss_pred cCC-HHHHHHHHHHHHHHcCCCCEEEEecccC-------CCCCCchHHh----hhhh-------cccHhhhhh-------
Q 041308 136 TWT-DDECKLIMENYYKALLAGRKLIACEPVL-------PDDSNESQRT----RALL-------EGDIFVMTI------- 189 (244)
Q Consensus 136 ~~~-~~~~~~~l~~~~~~L~pgG~lii~d~~~-------~~~~~~~~~~----~~~~-------~~d~~~~~~------- 189 (244)
|++ +++...+|++++++|+|||++++.-... +......... .+.. .....+...
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccc
Confidence 994 4567899999999999999999732210 0000000000 0000 000000000
Q ss_pred --hccCceecCHHHHHHHHHhCCCCeEEEEEc--------cceeEEEeecCc
Q 041308 190 --YRAKGKHKTEQEFKQLGFSTGFPHLRAFIS--------IIFTLFLSSKSN 231 (244)
Q Consensus 190 --~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~~~~~~~~ 231 (244)
.....+.++.++|.++|+++||+++++... .....+++++|+
T Consensus 194 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred cEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 000124569999999999999999998754 234557777764
No 70
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.74 E-value=8e-18 Score=135.31 Aligned_cols=170 Identities=15% Similarity=0.101 Sum_probs=115.1
Q ss_pred HHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCC
Q 041308 40 LMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDM 118 (244)
Q Consensus 40 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~ 118 (244)
.|++....+.....+.+++.++ .+..+|||+|||+|.++..+++. + .+ ++++|. +.+++.+++.. .++..+|+
T Consensus 9 ~y~~~~~~~~~~~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~-~~~~D~~~~~~~~~~~~~-~~~~~~d~ 82 (230)
T 3cc8_A 9 LYEEKSGHYYNAVNPNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TR-VSGIEAFPEAAEQAKEKL-DHVVLGDI 82 (230)
T ss_dssp -----------CCCHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CE-EEEEESSHHHHHHHHTTS-SEEEESCT
T ss_pred hhhccchhHHHHHHHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-Ce-EEEEeCCHHHHHHHHHhC-CcEEEcch
Confidence 3444444444555566777665 56689999999999999999988 4 67 999999 99999888643 37888998
Q ss_pred CCC---CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhh-hhcccH---hhhhh
Q 041308 119 FKS---IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRA-LLEGDI---FVMTI 189 (244)
Q Consensus 119 ~~~---~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~-~~~~d~---~~~~~ 189 (244)
.+. ++. .|+|++..++||+++. ..++++++++|+|||++++........ ...... ...... ....
T Consensus 83 ~~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~- 156 (230)
T 3cc8_A 83 ETMDMPYEEEQFDCVIFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI---SVLAPLLAGNWTYTEYGLLD- 156 (230)
T ss_dssp TTCCCCSCTTCEEEEEEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH---HHHHHHHTTCCCCBSSSTTB-
T ss_pred hhcCCCCCCCccCEEEECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH---HHHHHHhcCCceeccCCCCC-
Confidence 752 333 4999999999999876 489999999999999999987533211 000000 000000 0000
Q ss_pred hccCceecCHHHHHHHHHhCCCCeEEEEEccce
Q 041308 190 YRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 190 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 222 (244)
......++.++|.++++++||+++++......
T Consensus 157 -~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 188 (230)
T 3cc8_A 157 -KTHIRFFTFNEMLRMFLKAGYSISKVDRVYVD 188 (230)
T ss_dssp -TTCCCCCCHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred -cceEEEecHHHHHHHHHHcCCeEEEEEecccC
Confidence 11235578999999999999999998876544
No 71
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.73 E-value=1.4e-17 Score=138.01 Aligned_cols=163 Identities=9% Similarity=0.046 Sum_probs=114.8
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hH------HHHhCCCC-------CCeeEEeCC-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PE------VVAKAPSI-------PEVTHIGGD- 117 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~------~i~~a~~~-------~~i~~~~gd- 117 (244)
..+++.++ .++..+|||||||+|.++..+++.+ |+.+ ++++|+ +. +++.++++ +++++..+|
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~-v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGH-VTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCE-EEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34666666 6778999999999999999999986 7778 999999 65 77777643 579999998
Q ss_pred CCCC-C--Cc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhh--
Q 041308 118 MFKS-I--HV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIY-- 190 (244)
Q Consensus 118 ~~~~-~--p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-- 190 (244)
+... + +. .|+|++..++||+++.+ .+++.++++++|||++++.+...+.......................
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPS 188 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCC
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccc
Confidence 5432 2 33 49999999999999875 47777777777899999999876654211110000000000000000
Q ss_pred -ccC-ceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 191 -RAK-GKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 191 -~~~-~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
..+ ...++.+++.++++++||+++++..+.
T Consensus 189 ~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~ 220 (275)
T 3bkx_A 189 DVANIRTLITPDTLAQIAHDNTWTYTAGTIVE 220 (275)
T ss_dssp TTCSCCCCCCHHHHHHHHHHHTCEEEECCCBC
T ss_pred ccccccccCCHHHHHHHHHHCCCeeEEEEEec
Confidence 011 245799999999999999999887763
No 72
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.73 E-value=1.5e-17 Score=130.29 Aligned_cols=132 Identities=20% Similarity=0.172 Sum_probs=108.1
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc--ceEEE
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV--VDAIF 129 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~--~D~v~ 129 (244)
.+++.+ .++..+|||+|||+|.++..+++. +.+ ++++|. +.+++.+++. ++++++.+|+.+. ++. .|+|+
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 112 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHD-VLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIV 112 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCc-EEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEE
Confidence 355554 356789999999999999999987 456 999999 9999888764 6799999999874 543 49999
Q ss_pred ec-cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh
Q 041308 130 MK-WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS 208 (244)
Q Consensus 130 ~~-~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~ 208 (244)
+. .++||+++++...+++++.++|+|||++++..... ..++.+++.+++++
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~----------------------------~~~~~~~~~~~l~~ 164 (195)
T 3cgg_A 113 SAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG----------------------------RGWVFGDFLEVAER 164 (195)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT----------------------------SSCCHHHHHHHHHH
T ss_pred ECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC----------------------------CCcCHHHHHHHHHH
Confidence 98 89999988888899999999999999999854311 11468899999999
Q ss_pred CCCCeEEEEEc
Q 041308 209 TGFPHLRAFIS 219 (244)
Q Consensus 209 aGf~~~~~~~~ 219 (244)
+||++++....
T Consensus 165 ~Gf~~~~~~~~ 175 (195)
T 3cgg_A 165 VGLELENAFES 175 (195)
T ss_dssp HTEEEEEEESS
T ss_pred cCCEEeeeecc
Confidence 99999988654
No 73
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.73 E-value=2.1e-18 Score=142.63 Aligned_cols=152 Identities=11% Similarity=0.011 Sum_probs=107.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------------------------------
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------------------------------- 108 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------------------------------- 108 (244)
..++.+|||||||+|.++..++.... .+ ++++|. +.|++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~-~~-v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSF-QD-ITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhh-cc-eeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 45668999999999988776655432 25 999999 9999976631
Q ss_pred --CCee-EEeCCCCCC--C-----CcceEEEeccccccCC--HHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHh
Q 041308 109 --PEVT-HIGGDMFKS--I-----HVVDAIFMKWVLTTWT--DDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRT 176 (244)
Q Consensus 109 --~~i~-~~~gd~~~~--~-----p~~D~v~~~~~lh~~~--~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~ 176 (244)
.++. ++.+|+.+. + +..|+|++..++||+. .++..+++++++++|||||+|++.+...... .
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-----~- 204 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-----Y- 204 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E-
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-----c-
Confidence 1233 889999874 2 2359999999999853 3556789999999999999999987532211 0
Q ss_pred hhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc----------ceeEEEeecCc
Q 041308 177 RALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI----------IFTLFLSSKSN 231 (244)
Q Consensus 177 ~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~----------~~~~~~~~~~~ 231 (244)
... . .......++.+++.++|+++||+++++.... ....+++++|+
T Consensus 205 ----~~g----~-~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 260 (263)
T 2a14_A 205 ----MVG----K-REFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 260 (263)
T ss_dssp ----EET----T-EEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred ----eeC----C-eEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEec
Confidence 000 0 0111234589999999999999999987653 14556677764
No 74
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.73 E-value=1.6e-17 Score=134.96 Aligned_cols=101 Identities=25% Similarity=0.273 Sum_probs=83.0
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~ 125 (244)
+.+.+.+ ++..+|||+|||+|.++..+++. .+ ++++|+ +.+++.+++. .++++..+|+.+. .+. .
T Consensus 25 ~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~---~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 97 (243)
T 3d2l_A 25 AWVLEQV---EPGKRIADIGCGTGTATLLLADH---YE-VTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPV 97 (243)
T ss_dssp HHHHHHS---CTTCEEEEESCTTCHHHHHHTTT---SE-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCE
T ss_pred HHHHHHc---CCCCeEEEecCCCCHHHHHHhhC---Ce-EEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCc
Confidence 3344443 34589999999999999999876 56 999999 9999988753 5799999998764 444 4
Q ss_pred eEEEecc-ccccC-CHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 126 DAIFMKW-VLTTW-TDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 126 D~v~~~~-~lh~~-~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
|+|++.. ++||+ +.++...++++++++|+|||++++
T Consensus 98 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 98 DAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp EEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 9999986 99998 556678899999999999999997
No 75
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.71 E-value=2.9e-17 Score=137.66 Aligned_cols=144 Identities=14% Similarity=0.027 Sum_probs=96.6
Q ss_pred CCcceEEEEcCCccHHHHH----HHHHcCCCC-eEEEeec-hHHHHhCCCC-------CCeeE--EeCCCCCC-------
Q 041308 64 KGVKRLVDVGGSAGDCLRI----ILQKHCFIC-EGINFDL-PEVVAKAPSI-------PEVTH--IGGDMFKS------- 121 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~----l~~~~p~~~-~~~~~D~-~~~i~~a~~~-------~~i~~--~~gd~~~~------- 121 (244)
.+..+|||||||+|.++.. ++.++|+.+ .++++|. +.|++.+++. +++.+ ..++..+.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 4567999999999986654 445567775 0399999 9999877642 34444 44554321
Q ss_pred CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCH
Q 041308 122 IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTE 199 (244)
Q Consensus 122 ~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~ 199 (244)
++. .|+|++.+++||+++. .++|++++++|||||++++..... . ..+...+ ...............++.
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~--~--~~~~~~~---~~~~~~~~~~~~~~~~~~ 201 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSG--S--SGWDKLW---KKYGSRFPQDDLCQYITS 201 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECT--T--SHHHHHH---HHHGGGSCCCTTCCCCCH
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEecC--C--ccHHHHH---HHHHHhccCCCcccCCCH
Confidence 123 5999999999999986 478999999999999999986432 1 1221111 010000000011345789
Q ss_pred HHHHHHHHhCCCCeEEE
Q 041308 200 QEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~~ 216 (244)
++|.++|+++||+++..
T Consensus 202 ~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 202 DDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999998764
No 76
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.71 E-value=2e-17 Score=136.06 Aligned_cols=153 Identities=10% Similarity=-0.020 Sum_probs=112.9
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---C-----------------------------
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---P----------------------------- 109 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~----------------------------- 109 (244)
..++.+|||+|||+|.++..+++..+ .+ ++++|. +.+++.+++. .
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESF-TE-IIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhccc-Ce-EEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 35568999999999999999887765 46 999999 9999888642 1
Q ss_pred ---Ce-eEEeCCCCCC--CCc-----ceEEEeccccccCCH--HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHh
Q 041308 110 ---EV-THIGGDMFKS--IHV-----VDAIFMKWVLTTWTD--DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRT 176 (244)
Q Consensus 110 ---~i-~~~~gd~~~~--~p~-----~D~v~~~~~lh~~~~--~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~ 176 (244)
++ ++..+|+.+. ++. .|+|++..++|++++ ++...++++++++|||||++++.+......
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~------- 204 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY------- 204 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-------
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce-------
Confidence 17 8999999774 222 499999999995543 356789999999999999999988532210
Q ss_pred hhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccc----------eeEEEeecCch
Q 041308 177 RALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISII----------FTLFLSSKSNF 232 (244)
Q Consensus 177 ~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~----------~~~~~~~~~~~ 232 (244)
+... . ........+.+++.++|+++||+++++..... ...+++++|+.
T Consensus 205 -----~~~~--~-~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~ 262 (265)
T 2i62_A 205 -----YMIG--E-QKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPG 262 (265)
T ss_dssp -----EEET--T-EEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC
T ss_pred -----EEcC--C-ccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecccc
Confidence 0000 0 01112345789999999999999999887542 45577777753
No 77
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.70 E-value=1.3e-17 Score=132.48 Aligned_cols=152 Identities=10% Similarity=-0.055 Sum_probs=108.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc--ceEEEeccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV--VDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~--~D~v~~~~~ 133 (244)
..+..+|||+|||+|.++..++.. ++.+ ++++|. +.+++.+++. .++++..+|+.+. ++. .|+|++..+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYK-TYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGT 98 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCE-EEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcCh
Confidence 345689999999999985555443 4567 999999 9999888753 6799999999764 443 499999999
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
+||++.++..+++++++++|||||++++.+...++.............+...... ....+..++.+++.+++.++||..
T Consensus 99 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~g~~~ 177 (209)
T 2p8j_A 99 IFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERG-EKVIHSYVSLEEADKYFKDMKVLF 177 (209)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-C-CCEEEEEECHHHHHHTTTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCC-CceeEEecCHHHHHHHHhhcCcee
Confidence 9999877788999999999999999999887655432100000000000000000 011235679999999999999987
Q ss_pred EEEE
Q 041308 214 LRAF 217 (244)
Q Consensus 214 ~~~~ 217 (244)
.+..
T Consensus 178 ~~~~ 181 (209)
T 2p8j_A 178 KEDR 181 (209)
T ss_dssp EEEE
T ss_pred eeee
Confidence 7653
No 78
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.9e-17 Score=135.72 Aligned_cols=121 Identities=17% Similarity=0.065 Sum_probs=96.8
Q ss_pred HHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCC--------
Q 041308 38 NGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPS-------- 107 (244)
Q Consensus 38 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~-------- 107 (244)
...|++....+...+.+.+..... ++..+|||||||+|.++..+++.+ +..+ ++++|+ +.+++.+++
T Consensus 11 ~~~y~~~rp~y~~~~~~~l~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~ 87 (299)
T 3g5t_A 11 SERYSSSRPSYPSDFYKMIDEYHD--GERKLLVDVGCGPGTATLQMAQELKPFEQ-IIGSDLSATMIKTAEVIKEGSPDT 87 (299)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHCC--SCCSEEEEETCTTTHHHHHHHHHSSCCSE-EEEEESCHHHHHHHHHHHHHCC-C
T ss_pred hHHHhhcCCCCCHHHHHHHHHHhc--CCCCEEEEECCCCCHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHHHHhccCC
Confidence 345666555555555555555433 567899999999999999999986 7778 999999 999998875
Q ss_pred CCCeeEEeCCCCCC-CCc--------ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 108 IPEVTHIGGDMFKS-IHV--------VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 108 ~~~i~~~~gd~~~~-~p~--------~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..+++++.+|+.+. ++. .|+|++..++||+ + ...++++++++|||||++++.+.
T Consensus 88 ~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~ 150 (299)
T 3g5t_A 88 YKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGY 150 (299)
T ss_dssp CTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEec
Confidence 36899999999774 333 4999999999999 3 35899999999999999999554
No 79
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.68 E-value=7.1e-17 Score=132.64 Aligned_cols=133 Identities=7% Similarity=-0.078 Sum_probs=103.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-----------------------CCCeeEEeCCCC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-----------------------IPEVTHIGGDMF 119 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-----------------------~~~i~~~~gd~~ 119 (244)
.+..+|||+|||+|..+..|++.. .+ ++++|+ +.|++.|++ ..+++++++|++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G--~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRG--HT-VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTT--CE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCC--Ce-EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 456899999999999999999874 46 999999 999988742 157999999998
Q ss_pred CC-CC---cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCce
Q 041308 120 KS-IH---VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGK 195 (244)
Q Consensus 120 ~~-~p---~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 195 (244)
+. .+ ..|+|+...++|++++++...++++++++|||||+++++....+.... .....
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~-------------------~g~~~ 204 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH-------------------AGPPF 204 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC-------------------CCSSC
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC-------------------CCCCC
Confidence 75 32 249999999999999887888999999999999999765543221100 00011
Q ss_pred ecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 196 HKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 196 ~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
..+.+++.+++.+ +|+++.....
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEecc
Confidence 2578999999987 5998887654
No 80
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.68 E-value=4.8e-17 Score=130.62 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=102.6
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEEEeccccccCCHHH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~~ 141 (244)
..+|||+|||+|.++..+++. +++|. +.+++.+++. ++++..+|+.+. ++. .|+|++..++||+++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH-
Confidence 689999999999999988643 77899 9999988875 899999998664 443 4999999999999765
Q ss_pred HHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 142 CKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
..+++++.++|+|||++++.+..... .+....... .. ... .......++.+++.++++++||+++++...
T Consensus 119 -~~~l~~~~~~L~pgG~l~i~~~~~~~----~~~~~~~~~-~~-~~~-~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 -ERALKEAYRILKKGGYLIVGIVDRES----FLGREYEKN-KE-KSV-FYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp -HHHHHHHHHHEEEEEEEEEEEECSSS----HHHHHHHHT-TT-C-C-CSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred -HHHHHHHHHHcCCCcEEEEEEeCCcc----HHHHHHHHH-hc-Ccc-hhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 58999999999999999998763321 211110000 00 000 012245579999999999999999998664
No 81
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=126.21 Aligned_cols=132 Identities=15% Similarity=0.080 Sum_probs=101.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEEE
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAIF 129 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v~ 129 (244)
+.+++.+....+..+|||+|||+|.++..+. .+ ++++|+ +. ++++..+|+.+. ++. .|+|+
T Consensus 56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~-v~~~D~s~~---------~~~~~~~d~~~~~~~~~~fD~v~ 120 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NP-VHCFDLASL---------DPRVTVCDMAQVPLEDESVDVAV 120 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SC-EEEEESSCS---------STTEEESCTTSCSCCTTCEEEEE
T ss_pred HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----cc-EEEEeCCCC---------CceEEEeccccCCCCCCCEeEEE
Confidence 3444444324566899999999999988773 46 999998 54 678889998764 443 49999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
+..++|+ .+ ...++++++++|+|||++++.+.... ..+.+++.++++++
T Consensus 121 ~~~~l~~-~~--~~~~l~~~~~~L~~gG~l~i~~~~~~----------------------------~~~~~~~~~~l~~~ 169 (215)
T 2zfu_A 121 FCLSLMG-TN--IRDFLEEANRVLKPGGLLKVAEVSSR----------------------------FEDVRTFLRAVTKL 169 (215)
T ss_dssp EESCCCS-SC--HHHHHHHHHHHEEEEEEEEEEECGGG----------------------------CSCHHHHHHHHHHT
T ss_pred Eehhccc-cC--HHHHHHHHHHhCCCCeEEEEEEcCCC----------------------------CCCHHHHHHHHHHC
Confidence 9999985 33 36889999999999999999875210 12688999999999
Q ss_pred CCCeEEEEEccceeEEEeecCc
Q 041308 210 GFPHLRAFISIIFTLFLSSKSN 231 (244)
Q Consensus 210 Gf~~~~~~~~~~~~~~~~~~~~ 231 (244)
||++++.........+++++|.
T Consensus 170 Gf~~~~~~~~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 170 GFKIVSKDLTNSHFFLFDFQKT 191 (215)
T ss_dssp TEEEEEEECCSTTCEEEEEEEC
T ss_pred CCEEEEEecCCCeEEEEEEEec
Confidence 9999998776666677777664
No 82
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.68 E-value=7.1e-17 Score=141.74 Aligned_cols=152 Identities=15% Similarity=0.097 Sum_probs=110.6
Q ss_pred cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC----CC--
Q 041308 51 PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS----IH-- 123 (244)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~----~p-- 123 (244)
..++.+++.+. .++..+|||||||+|.++..+++.. .+ ++++|+ +.+++.+++. .+......+... +|
T Consensus 94 ~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~-v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~ 168 (416)
T 4e2x_A 94 MLARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VR-HLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRT 168 (416)
T ss_dssp HHHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CE-EEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--Cc-EEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccC
Confidence 34556777776 6778899999999999999999864 36 999999 9999999875 344433222211 22
Q ss_pred --cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 --VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 --~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
..|+|++.+++||+++. ..+|++++++|||||++++....... .... ..++. . +......++.++
T Consensus 169 ~~~fD~I~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~------~~~~-~~~~~--~--~~~~~~~~s~~~ 235 (416)
T 4e2x_A 169 EGPANVIYAANTLCHIPYV--QSVLEGVDALLAPDGVFVFEDPYLGD------IVAK-TSFDQ--I--FDEHFFLFSATS 235 (416)
T ss_dssp HCCEEEEEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEEEECHHH------HHHH-TCGGG--C--STTCCEECCHHH
T ss_pred CCCEEEEEECChHHhcCCH--HHHHHHHHHHcCCCeEEEEEeCChHH------hhhh-cchhh--h--hhhhhhcCCHHH
Confidence 24999999999999865 58999999999999999986543211 0000 01110 0 112345679999
Q ss_pred HHHHHHhCCCCeEEEEEcc
Q 041308 202 FKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~~~ 220 (244)
+.++++++||+++++...+
T Consensus 236 l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 236 VQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEEEcc
Confidence 9999999999999998865
No 83
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.68 E-value=1.2e-16 Score=133.28 Aligned_cols=142 Identities=15% Similarity=0.061 Sum_probs=109.1
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~ 125 (244)
..+++.++ ..+..+|||+|||+|.++..+++. +.+ ++++|. +.+++.+++. .++++..+|+.+. .+. .
T Consensus 110 ~~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 110 GDVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYD-VTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred HHHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence 34444444 345789999999999999999987 347 999999 9999888763 2899999999775 333 5
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|+|++..++||++++....+++++.++|+|||+++++.....+....+ ......++.++++++
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~ 248 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP-----------------LPFSFTFAENELKEY 248 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS-----------------SCCSCCBCTTHHHHH
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC-----------------CCccccCCHHHHHHH
Confidence 999999999999988888999999999999999888766544331110 112334567889999
Q ss_pred HHhCCCCeEEEEE
Q 041308 206 GFSTGFPHLRAFI 218 (244)
Q Consensus 206 l~~aGf~~~~~~~ 218 (244)
+++ |+++....
T Consensus 249 ~~~--~~~~~~~~ 259 (286)
T 3m70_A 249 YKD--WEFLEYNE 259 (286)
T ss_dssp TTT--SEEEEEEC
T ss_pred hcC--CEEEEEEc
Confidence 854 88888743
No 84
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.67 E-value=4.9e-17 Score=135.97 Aligned_cols=125 Identities=13% Similarity=0.104 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHcccc---cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---
Q 041308 36 KMNGLMRKAMSRVFV---PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--- 108 (244)
Q Consensus 36 ~~~~~f~~~~~~~~~---~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--- 108 (244)
...+.|+..+..... .+.+.+.+.++ ..+..+|||||||+|.++..+++..+ + ++++|+ +.+++.++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~l~~a~~~~~~ 101 (293)
T 3thr_A 26 EAARVWQLYIGDTRSRTAEYKAWLLGLLR-QHGCHRVLDVACGTGVDSIMLVEEGF--S-VTSVDASDKMLKYALKERWN 101 (293)
T ss_dssp HHHHHHHHHHTCCSCBCHHHHHHHHHHHH-HTTCCEEEETTCTTSHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCcchHHHHHHHHHHHhc-ccCCCEEEEecCCCCHHHHHHHHCCC--e-EEEEECCHHHHHHHHHhhhh
Confidence 344455555432222 22334444444 45678999999999999999998854 6 999999 9999988642
Q ss_pred -------CCeeEEeCCCCCC----CCc--ceEEEec-cccccCCH-----HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 109 -------PEVTHIGGDMFKS----IHV--VDAIFMK-WVLTTWTD-----DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 109 -------~~i~~~~gd~~~~----~p~--~D~v~~~-~~lh~~~~-----~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.++.+..+|+.+. ++. .|+|++. +++||+++ ++..+++++++++|||||++++...
T Consensus 102 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 102 RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp TTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 5788899998652 233 4999998 89999998 6678999999999999999998753
No 85
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.67 E-value=3.8e-17 Score=136.65 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=98.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-C---------------------------------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-P--------------------------------- 109 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~--------------------------------- 109 (244)
+..+|||||||+|.++. ++...+..+ ++++|+ +.|++.+++. .
T Consensus 71 ~~~~vLDiGcG~G~~~~-l~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQL-LSACSHFED-ITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGG-TTGGGGCSE-EEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHH-HhhccCCCe-EEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 56899999999999544 333334457 999999 9999876541 0
Q ss_pred --CeeEEeCCCCCCC-------Cc--ceEEEeccccccCCHH--HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHh
Q 041308 110 --EVTHIGGDMFKSI-------HV--VDAIFMKWVLTTWTDD--ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRT 176 (244)
Q Consensus 110 --~i~~~~gd~~~~~-------p~--~D~v~~~~~lh~~~~~--~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~ 176 (244)
.++++.+|+.+.+ +. .|+|++..++||+.++ +..++|++++++|||||+|++.+..... +.
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~-----~~- 222 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES-----WY- 222 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC-----EE-
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc-----eE-
Confidence 1456677887632 22 5999999999995533 5678999999999999999998643211 00
Q ss_pred hhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 177 RALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 177 ~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...+ .......++.++|.++|+++||+++++....
T Consensus 223 ---~~~~------~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 223 ---LAGE------ARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp ---EETT------EEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ---EcCC------eeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 0000 0011234689999999999999999887654
No 86
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.67 E-value=8.9e-16 Score=125.48 Aligned_cols=106 Identities=16% Similarity=0.243 Sum_probs=85.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~- 124 (244)
+..+++.+. ..+..+|||+|||+|.++..+++. +.+ ++++|+ +.+++.++++ .+++++.+|+.+. .+.
T Consensus 30 ~~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~ 105 (252)
T 1wzn_A 30 VEEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYE-VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNE 105 (252)
T ss_dssp HHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSC
T ss_pred HHHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCC
Confidence 344555554 456689999999999999999986 457 999999 9999988753 4799999999764 443
Q ss_pred ceEEEec-cccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 VDAIFMK-WVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 ~D~v~~~-~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|+|++. ..+++++.++..+++++++++|+|||.+++.
T Consensus 106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4999986 5667788778889999999999999999864
No 87
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.66 E-value=1e-16 Score=134.08 Aligned_cols=155 Identities=13% Similarity=0.018 Sum_probs=108.8
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-C-Cc--ceEEEec
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-I-HV--VDAIFMK 131 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~-p~--~D~v~~~ 131 (244)
.+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.+++. .+++++.+|+.+. + +. .|+|++.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGE-YYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSE-EEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCE-EEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 56689999999999999998876 4457 999999 9999888753 4689999999874 4 33 4999999
Q ss_pred ccccc--CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC--------CchHHh-------h----hhhcccHhhhh-h
Q 041308 132 WVLTT--WTDDECKLIMENYYKALLAGRKLIACEPVLPDDS--------NESQRT-------R----ALLEGDIFVMT-I 189 (244)
Q Consensus 132 ~~lh~--~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~--------~~~~~~-------~----~~~~~d~~~~~-~ 189 (244)
.++|| .+.++...+|++++++|||||++++..+...... ...... . ....+...... .
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 220 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 220 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence 99998 5677778999999999999999999765321000 000000 0 00000000000 0
Q ss_pred hccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 190 YRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 190 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
.......++.+++.++++++||+++++..+.
T Consensus 221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp SSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred cCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 0011245689999999999999999987764
No 88
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.66 E-value=1.3e-15 Score=123.29 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=104.9
Q ss_pred hccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC----CCCCeeEEeCCCCC----C-CCc-c
Q 041308 57 LDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP----SIPEVTHIGGDMFK----S-IHV-V 125 (244)
Q Consensus 57 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~----~~~~i~~~~gd~~~----~-~p~-~ 125 (244)
++.++ +++..+|||+|||+|.++..+++..+..+ ++++|. +.+++.++ ..+++.++.+|+.+ . ++. .
T Consensus 67 l~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (230)
T 1fbn_A 67 LKVMP-IKRDSKILYLGASAGTTPSHVADIADKGI-VYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSE-EEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCE
T ss_pred ccccC-CCCCCEEEEEcccCCHHHHHHHHHcCCcE-EEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccE
Confidence 45555 67778999999999999999999987667 999999 88886543 34789999999976 2 333 4
Q ss_pred eEEEeccccccCCHH-HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 126 DAIFMKWVLTTWTDD-ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 126 D~v~~~~~lh~~~~~-~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
|+|+ |++++. +...+++++.+.|||||++++. .........+. .. ....+++.
T Consensus 145 D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~---------~~----------~~~~~~l~- 198 (230)
T 1fbn_A 145 DVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKD---------PK----------EIFKEQKE- 198 (230)
T ss_dssp EEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSC---------HH----------HHHHHHHH-
T ss_pred EEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCC---------HH----------HhhHHHHH-
Confidence 9988 454433 3457799999999999999997 21111100000 00 11246778
Q ss_pred HHHhCCCCeEEEEEccce---eEEEeecCc
Q 041308 205 LGFSTGFPHLRAFISIIF---TLFLSSKSN 231 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~---~~~~~~~~~ 231 (244)
+++++||+.++...+... ..+++++++
T Consensus 199 ~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k~ 228 (230)
T 1fbn_A 199 ILEAGGFKIVDEVDIEPFEKDHVMFVGIWE 228 (230)
T ss_dssp HHHHHTEEEEEEEECTTTSTTEEEEEEEEC
T ss_pred HHHHCCCEEEEEEccCCCccceEEEEEEeC
Confidence 899999999998877543 666666654
No 89
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.65 E-value=5.7e-16 Score=127.62 Aligned_cols=141 Identities=15% Similarity=0.158 Sum_probs=102.6
Q ss_pred CcceEEEEcCCc--cHHHHHH-HHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---C--C---c-c
Q 041308 65 GVKRLVDVGGSA--GDCLRII-LQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---I--H---V-V 125 (244)
Q Consensus 65 ~~~~vLDvG~G~--G~~~~~l-~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~--p---~-~ 125 (244)
+..+|||||||+ +.++..+ .+..|+.+ ++++|. |.|++.|++. .+++++.+|+.+. + | . .
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~ar-Vv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESR-VVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCE-EEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 568999999997 3344444 44679999 999999 9999999863 3699999999774 1 1 1 1
Q ss_pred e-----EEEeccccccCCHHH-HHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCH
Q 041308 126 D-----AIFMKWVLTTWTDDE-CKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTE 199 (244)
Q Consensus 126 D-----~v~~~~~lh~~~~~~-~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~ 199 (244)
| +|++..+|||+++++ ...++++++++|+|||+|++.+...+.. +.. .....+..... ......+|.
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~---p~~--~~~~~~~~~~~--g~p~~~rs~ 229 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFA---PQE--VGRVAREYAAR--NMPMRLRTH 229 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTS---HHH--HHHHHHHHHHT--TCCCCCCCH
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCC---HHH--HHHHHHHHHhc--CCCCccCCH
Confidence 3 688999999999876 4789999999999999999998765432 111 11122222221 122456899
Q ss_pred HHHHHHHHhCCCCeEE
Q 041308 200 QEFKQLGFSTGFPHLR 215 (244)
Q Consensus 200 ~e~~~ll~~aGf~~~~ 215 (244)
+++.++| .||+.++
T Consensus 230 ~ei~~~f--~Glelve 243 (277)
T 3giw_A 230 AEAEEFF--EGLELVE 243 (277)
T ss_dssp HHHHHTT--TTSEECT
T ss_pred HHHHHHh--CCCcccC
Confidence 9999999 4999665
No 90
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.64 E-value=9.5e-16 Score=123.87 Aligned_cols=144 Identities=11% Similarity=0.029 Sum_probs=100.9
Q ss_pred cCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCC----CCCCeeEEeCCCCCC--CCc----ce
Q 041308 59 GYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAP----SIPEVTHIGGDMFKS--IHV----VD 126 (244)
Q Consensus 59 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~----~~~~i~~~~gd~~~~--~p~----~D 126 (244)
.++ ++++.+|||+|||+|.++..+++. .|+.+ ++++|. +.|++.++ +..++..+.+|..++ .+. .|
T Consensus 72 ~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~-V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 72 ELP-VKEGDRILYLGIASGTTASHMSDIIGPRGR-IYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp CCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred hcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEE
Confidence 344 889999999999999999999997 48888 999999 98887665 347899999998765 221 38
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHH
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLG 206 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll 206 (244)
+|++. +++. ++...+++++++.|||||++++.......+ .. .+. ....++-.+.|
T Consensus 150 vVf~d--~~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d----~~---------------~p~--~~~~~~ev~~L 204 (233)
T 4df3_A 150 GLYAD--VAQP--EQAAIVVRNARFFLRDGGYMLMAIKARSID----VT---------------TEP--SEVYKREIKTL 204 (233)
T ss_dssp EEEEC--CCCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHH----HH---------------TCC--CHHHHHHHHHH
T ss_pred EEEEe--ccCC--hhHHHHHHHHHHhccCCCEEEEEEecccCC----CC---------------CCh--HHHHHHHHHHH
Confidence 77753 3332 334688999999999999999875322111 00 000 00112334567
Q ss_pred HhCCCCeEEEEEccc---eeEEEeec
Q 041308 207 FSTGFPHLRAFISII---FTLFLSSK 229 (244)
Q Consensus 207 ~~aGf~~~~~~~~~~---~~~~~~~~ 229 (244)
+++||+..+..++.. .+.+++++
T Consensus 205 ~~~GF~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 205 MDGGLEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp HHTTCCEEEEEECTTTSTTEEEEEEC
T ss_pred HHCCCEEEEEEccCCCCCceEEEEEE
Confidence 899999999877643 45666654
No 91
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.64 E-value=2.3e-15 Score=119.38 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=101.0
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC---
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH--- 123 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p--- 123 (244)
..+++.++ .++..+|||+|||+|.++..+++..|..+ ++++|. +.+++.++++ ++++++.+|+.+.++
T Consensus 30 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 30 AVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGR-IFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSE-EEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred HHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence 34566666 77789999999999999999999998888 999999 9999988763 689999999977643
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK 203 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~ 203 (244)
..|+|++...++ ....+++++.++|||||++++..... .+.+++.
T Consensus 108 ~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------------~~~~~~~ 152 (204)
T 3e05_A 108 DPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL------------------------------DTLTKAV 152 (204)
T ss_dssp CCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH------------------------------HHHHHHH
T ss_pred CCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc------------------------------ccHHHHH
Confidence 359999988776 23588999999999999999855311 0255678
Q ss_pred HHHHhCCCCeEEE
Q 041308 204 QLGFSTGFPHLRA 216 (244)
Q Consensus 204 ~ll~~aGf~~~~~ 216 (244)
++++++|| .+++
T Consensus 153 ~~l~~~g~-~~~~ 164 (204)
T 3e05_A 153 EFLEDHGY-MVEV 164 (204)
T ss_dssp HHHHHTTC-EEEE
T ss_pred HHHHHCCC-ceeE
Confidence 89999999 4443
No 92
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.63 E-value=3.8e-16 Score=125.14 Aligned_cols=143 Identities=8% Similarity=0.012 Sum_probs=96.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHh----CCC------CCCeeEEeCCCCCC-CCcc-eEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAK----APS------IPEVTHIGGDMFKS-IHVV-DAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~----a~~------~~~i~~~~gd~~~~-~p~~-D~v~ 129 (244)
.++..+|||+|||+|.++..+++.+|..+ ++++|+ +.|++. +++ .++++++.+|+.+. ++.. |.|.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~-v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRL-VVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEE-EEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEE
Confidence 56678999999999999999999999989 999999 887774 222 25899999999773 3322 6655
Q ss_pred ecc---cc--ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 130 MKW---VL--TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 130 ~~~---~l--h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
+.. .+ ||+++. ..++++++++|||||++++.-....-....+ ..... ......+..+++.+
T Consensus 104 ~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~l~~ 169 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPSVP------EVGEH------PEPTPDSADEWLAP 169 (218)
T ss_dssp EESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTBCG------GGTTC------CCCCHHHHHHHHHH
T ss_pred EEccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEecccccccccc------ccccC------CccchHHHHHHHHH
Confidence 222 22 244443 5889999999999999998432111110000 00000 01112223556889
Q ss_pred HHHhCCCCeEEEEEcc
Q 041308 205 LGFSTGFPHLRAFISI 220 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~ 220 (244)
+++++||++.++..+.
T Consensus 170 ~l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 170 RYAEAGWKLADCRYLE 185 (218)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHcCCCceeeeccc
Confidence 9999999999987654
No 93
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.63 E-value=1.2e-15 Score=123.22 Aligned_cols=147 Identities=9% Similarity=-0.059 Sum_probs=93.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec--hHHHHhC---CCC------CCeeEEeCCCCCCCCc--ceEEEe
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL--PEVVAKA---PSI------PEVTHIGGDMFKSIHV--VDAIFM 130 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~--~~~i~~a---~~~------~~i~~~~gd~~~~~p~--~D~v~~ 130 (244)
.+..+|||||||+|.++..++++.|+.+ ++++|+ +.|++.| +++ +++.+..+|+.+. |. .|.|.+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~-v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~ 100 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTF-YIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADS 100 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEE-EEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEE
Confidence 4568999999999999999998889888 999999 4454444 543 5799999998554 43 255444
Q ss_pred ccccccCCHH------HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 131 KWVLTTWTDD------ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 131 ~~~lh~~~~~------~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
..+...++.. ....+|++++++|||||++++...........+. ..... . .........+++.+
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~-----~~~~~---~--~~~~~~~~~~el~~ 170 (225)
T 3p2e_A 101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEI-----KKRGL---P--LLSKAYFLSEQYKA 170 (225)
T ss_dssp EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC------------------------CCHHHHHSHHHHH
T ss_pred EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchh-----hhcCC---C--CCChhhcchHHHHH
Confidence 4433322221 0135799999999999999995433222100000 00000 0 00111112235999
Q ss_pred HHHhCCCCeEEEEEccce
Q 041308 205 LGFSTGFPHLRAFISIIF 222 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~ 222 (244)
+++++||++..+......
T Consensus 171 ~l~~aGf~v~~~~~~~~~ 188 (225)
T 3p2e_A 171 ELSNSGFRIDDVKELDNE 188 (225)
T ss_dssp HHHHHTCEEEEEEEECHH
T ss_pred HHHHcCCCeeeeeecCHH
Confidence 999999999998877643
No 94
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.63 E-value=6.4e-16 Score=120.12 Aligned_cols=139 Identities=12% Similarity=0.078 Sum_probs=103.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C-CeeEEeCCCCCCC-Cc-ceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P-EVTHIGGDMFKSI-HV-VDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~-~i~~~~gd~~~~~-p~-~D~v~~~~~ 133 (244)
.+..+|||+|||+|.++..+....|+.+ ++++|+ +.|++.++++ . ++.+ .|..+.. +. +|+|++..+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~-~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKII-YHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCE-EEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 4578999999999999999999999998 999999 9999999864 2 4554 6665543 33 499999999
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecc--cCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEP--VLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
+|++ ++ ....+.++++.|+|||.+|..+. +.... + .++ ..-.+.|++.+ ...+
T Consensus 125 LHlL-~~-~~~al~~v~~~L~pggvfISfptksl~Gr~---~-------gm~------------~~Y~~~~~~~~-~~~~ 179 (200)
T 3fzg_A 125 LPVL-KQ-QDVNILDFLQLFHTQNFVISFPIKSLSGKE---K-------GME------------ENYQLWFESFT-KGWI 179 (200)
T ss_dssp HHHH-HH-TTCCHHHHHHTCEEEEEEEEEECCCCC--C---T-------TCC------------CCHHHHHHHHT-TTTS
T ss_pred HHhh-hh-hHHHHHHHHHHhCCCCEEEEeChHHhcCCC---c-------chh------------hhHHHHHHHhc-cCcc
Confidence 9999 44 34566699999999999998873 21111 0 011 11145677777 6777
Q ss_pred CeEEEEEccceeEEEeecC
Q 041308 212 PHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~ 230 (244)
.+++...++.-..+++.++
T Consensus 180 ~~~~~~~~~nEl~y~~~~~ 198 (200)
T 3fzg_A 180 KILDSKVIGNELVYITSGF 198 (200)
T ss_dssp CEEEEEEETTEEEEEECCC
T ss_pred eeeeeeeeCceEEEEEecc
Confidence 8888877877777777654
No 95
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.63 E-value=4.3e-17 Score=130.30 Aligned_cols=99 Identities=18% Similarity=0.228 Sum_probs=85.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCCCCc--ceEEEeccccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKSIHV--VDAIFMKWVLT 135 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~~p~--~D~v~~~~~lh 135 (244)
..+..+|||+|||+|.++..+++... + ++++|+ +.+++.+++. ++++++.+|+.+..+. .|+|++..++|
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 125 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCK--R-LTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLY 125 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEE--E-EEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHH
Confidence 55678999999999999999998863 5 999999 9999888753 6899999999776433 49999999999
Q ss_pred cCCH-HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 136 TWTD-DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~~~~-~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+++ ++..++++++.++|||||++++...
T Consensus 126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 9996 5566889999999999999999765
No 96
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.62 E-value=2.1e-15 Score=119.26 Aligned_cols=143 Identities=11% Similarity=0.002 Sum_probs=106.0
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~- 124 (244)
+..++..++ +. +|||+|||+|.++..+++. ..+ ++++|. +.+++.+++. .++++..+|+.+. ++.
T Consensus 21 l~~~~~~~~---~~-~vLdiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 93 (202)
T 2kw5_A 21 LVSVANQIP---QG-KILCLAEGEGRNACFLASL--GYE-VTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVAD 93 (202)
T ss_dssp HHHHHHHSC---SS-EEEECCCSCTHHHHHHHTT--TCE-EEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTT
T ss_pred HHHHHHhCC---CC-CEEEECCCCCHhHHHHHhC--CCe-EEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcC
Confidence 444555443 44 9999999999999999986 347 999999 9999888764 3899999999775 443
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK 203 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~ 203 (244)
.|+|++. +.|++.++...+++++.++|+|||++++.+...... . .. .. . .......++.+++.
T Consensus 94 ~fD~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~---~-~~-----~~----~-~~~~~~~~~~~~l~ 157 (202)
T 2kw5_A 94 AWEGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQL---Q-YN-----TG----G-PKDLDLLPKLETLQ 157 (202)
T ss_dssp TCSEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTG---G-GT-----SC----C-SSSGGGCCCHHHHH
T ss_pred CccEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc---c-CC-----CC----C-CCcceeecCHHHHH
Confidence 4999984 345677778899999999999999999988743321 0 00 00 0 01113457899999
Q ss_pred HHHHhCCCCeEEEEEcc
Q 041308 204 QLGFSTGFPHLRAFISI 220 (244)
Q Consensus 204 ~ll~~aGf~~~~~~~~~ 220 (244)
++++ ||+++++....
T Consensus 158 ~~l~--Gf~v~~~~~~~ 172 (202)
T 2kw5_A 158 SELP--SLNWLIANNLE 172 (202)
T ss_dssp HHCS--SSCEEEEEEEE
T ss_pred HHhc--CceEEEEEEEE
Confidence 9998 99999986653
No 97
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.62 E-value=7.9e-17 Score=131.08 Aligned_cols=145 Identities=12% Similarity=0.030 Sum_probs=97.0
Q ss_pred cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCC---C
Q 041308 51 PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFK---S 121 (244)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~---~ 121 (244)
++++.+++... .++.+|||||||+|..+..+++..|. + ++++|+ |.|++.|++. .++.++.+|..+ +
T Consensus 48 ~~m~~~a~~~~--~~G~rVLdiG~G~G~~~~~~~~~~~~-~-v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~ 123 (236)
T 3orh_A 48 PYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAPID-E-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT 123 (236)
T ss_dssp HHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHTTSCEE-E-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG
T ss_pred HHHHHHHHhhc--cCCCeEEEECCCccHHHHHHHHhCCc-E-EEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccc
Confidence 33444555443 45689999999999999999987664 6 899999 9999998753 568888888743 2
Q ss_pred CCc--ceEEEe-----ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCc
Q 041308 122 IHV--VDAIFM-----KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG 194 (244)
Q Consensus 122 ~p~--~D~v~~-----~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 194 (244)
++. .|.|++ ...++|+.+. ..++++++|+|||||+|++.+...... .....++. -
T Consensus 124 ~~~~~FD~i~~D~~~~~~~~~~~~~~--~~~~~e~~rvLkPGG~l~f~~~~~~~~-------~~~~~~~~---------~ 185 (236)
T 3orh_A 124 LPDGHFDGILYDTYPLSEETWHTHQF--NFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKYSD---------I 185 (236)
T ss_dssp SCTTCEEEEEECCCCCBGGGTTTHHH--HHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTCSC---------H
T ss_pred ccccCCceEEEeeeecccchhhhcch--hhhhhhhhheeCCCCEEEEEecCCchh-------hhhhhhhh---------h
Confidence 443 377753 4555555554 588999999999999999865321100 00011110 0
Q ss_pred eecCHHHHHHHHHhCCCCeEEEE
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAF 217 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~ 217 (244)
.....+.+...|.++||+...+.
T Consensus 186 ~~~~~~~~~~~L~eaGF~~~~i~ 208 (236)
T 3orh_A 186 TIMFEETQVPALLEAGFRRENIR 208 (236)
T ss_dssp HHHHHHHTHHHHHHHTCCGGGEE
T ss_pred hhhhHHHHHHHHHHcCCeEEEEE
Confidence 01124566777889999976654
No 98
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.61 E-value=3.7e-15 Score=115.10 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=96.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCc--ceEEEeccccccCCHH-
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHV--VDAIFMKWVLTTWTDD- 140 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~--~D~v~~~~~lh~~~~~- 140 (244)
+..+|||+|||+|.++..+++.. + ++++|+ +.+++. ..+++++.+|+.++++. .|+|+++..+|+.++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~-v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---T-VVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---E-EEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCeEEEeccCccHHHHHHHhcC---c-EEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 45799999999999999999876 6 999999 999987 57899999999887553 4999999888865543
Q ss_pred ------HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeE
Q 041308 141 ------ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHL 214 (244)
Q Consensus 141 ------~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 214 (244)
+...+++++.+.| |||++++.+... ...+++.++++++||+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~------------------------------~~~~~l~~~l~~~gf~~~ 144 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA------------------------------NRPKEVLARLEERGYGTR 144 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG------------------------------GCHHHHHHHHHHTTCEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecC------------------------------CCHHHHHHHHHHCCCcEE
Confidence 3457889999999 999999976311 126678999999999988
Q ss_pred EEEEcc
Q 041308 215 RAFISI 220 (244)
Q Consensus 215 ~~~~~~ 220 (244)
.+....
T Consensus 145 ~~~~~~ 150 (170)
T 3q87_B 145 ILKVRK 150 (170)
T ss_dssp EEEEEE
T ss_pred EEEeec
Confidence 876643
No 99
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.61 E-value=1.4e-15 Score=120.58 Aligned_cols=131 Identities=11% Similarity=-0.007 Sum_probs=105.5
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV-VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~-~D~v~~~~~lh 135 (244)
++..+|||+|||+|.++..+++. +..+ ++++|. +.+++.++++ .++++..+|+.+..+. .|+|++...+|
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKL-GAKS-VLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 45689999999999999998864 5567 999999 9999888763 3499999999876544 59999988876
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
+ ...+++++.++|+|||++++.+... .+.+++.++++++||+.++
T Consensus 137 ~-----~~~~l~~~~~~L~~gG~l~~~~~~~------------------------------~~~~~~~~~~~~~Gf~~~~ 181 (205)
T 3grz_A 137 I-----LLDLIPQLDSHLNEDGQVIFSGIDY------------------------------LQLPKIEQALAENSFQIDL 181 (205)
T ss_dssp H-----HHHHGGGSGGGEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTEEEEE
T ss_pred H-----HHHHHHHHHHhcCCCCEEEEEecCc------------------------------ccHHHHHHHHHHcCCceEE
Confidence 5 3578999999999999999965421 1256788999999999999
Q ss_pred EEEccceeEEEeecCc
Q 041308 216 AFISIIFTLFLSSKSN 231 (244)
Q Consensus 216 ~~~~~~~~~~~~~~~~ 231 (244)
+.....-..++..+++
T Consensus 182 ~~~~~~w~~~~~~~~~ 197 (205)
T 3grz_A 182 KMRAGRWIGLAISRKH 197 (205)
T ss_dssp EEEETTEEEEEEEECC
T ss_pred eeccCCEEEEEEeccc
Confidence 8887766667666654
No 100
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.60 E-value=1.8e-15 Score=130.67 Aligned_cols=113 Identities=14% Similarity=0.212 Sum_probs=91.6
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC---------------CCCeeEEeC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS---------------IPEVTHIGG 116 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~---------------~~~i~~~~g 116 (244)
+..+++.+. +++..+|||||||+|..+..++...+..+ ++++|+ +.+++.|++ ..+|+|+.|
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~k-VvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKH-HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 455666666 78889999999999999999998876556 999999 888777753 268999999
Q ss_pred CCCCC-CC----cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC
Q 041308 117 DMFKS-IH----VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS 170 (244)
Q Consensus 117 d~~~~-~p----~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~ 170 (244)
|+++. ++ .+|+|+++.+++ . ++....|++++++|||||+|++.|.+.+++.
T Consensus 240 D~~~lp~~d~~~~aDVVf~Nn~~F--~-pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 240 DFLSEEWRERIANTSVIFVNNFAF--G-PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp CTTSHHHHHHHHTCSEEEECCTTC--C-HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred cccCCccccccCCccEEEEccccc--C-chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 99875 42 369999887764 2 3456778999999999999999999887653
No 101
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.60 E-value=4e-15 Score=118.38 Aligned_cols=137 Identities=15% Similarity=0.056 Sum_probs=98.8
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc--ceEEE
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV--VDAIF 129 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~--~D~v~ 129 (244)
++..+. .+..+|||+|||+|.++..+ +. + ++++|. +.+++.+++. .+++++.+|+.+. ++. .|+|+
T Consensus 29 ~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 29 ALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQ-KVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp HHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSE-EEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred HHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCe-EEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence 444443 25689999999999998877 34 6 999999 9999988765 6899999998764 444 49999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
+..++||+++. .+++++++++|||||++++.+..... .+.... ......... .....+.++.++++++++
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~----~~~~~~-~~~~~~~~~-~~~~~~~~s~~~l~~~l~-- 170 (211)
T 2gs9_A 101 LFTTLEFVEDV--ERVLLEARRVLRPGGALVVGVLEALS----PWAALY-RRLGEKGVL-PWAQARFLAREDLKALLG-- 170 (211)
T ss_dssp EESCTTTCSCH--HHHHHHHHHHEEEEEEEEEEEECTTS----HHHHHH-HHHHHTTCT-TGGGCCCCCHHHHHHHHC--
T ss_pred EcChhhhcCCH--HHHHHHHHHHcCCCCEEEEEecCCcC----cHHHHH-HHHhhccCc-cccccccCCHHHHHHHhc--
Confidence 99999999865 58999999999999999998763321 221110 000000000 011245679999999998
Q ss_pred C
Q 041308 210 G 210 (244)
Q Consensus 210 G 210 (244)
|
T Consensus 171 G 171 (211)
T 2gs9_A 171 P 171 (211)
T ss_dssp S
T ss_pred C
Confidence 7
No 102
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.59 E-value=9.3e-15 Score=121.41 Aligned_cols=135 Identities=15% Similarity=0.087 Sum_probs=105.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceEEEecc--
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDAIFMKW-- 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~v~~~~-- 132 (244)
.+..+|||+|||+|.++..+++..|..+ ++++|+ +.+++.++++ ++++++.+|+++.++. .|+|+++.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~-v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCE-IIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPY 186 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCC
Confidence 3457999999999999999999999888 999999 9999988764 5799999999887533 59999974
Q ss_pred -----------ccccCCH----------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhc
Q 041308 133 -----------VLTTWTD----------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR 191 (244)
Q Consensus 133 -----------~lh~~~~----------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 191 (244)
+++|-+. +....+++++.+.|+|||++++...
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~--------------------------- 239 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG--------------------------- 239 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC---------------------------
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---------------------------
Confidence 3333221 3456899999999999999998421
Q ss_pred cCceecCHHHHHHHHHhCCCCeEEEE-EccceeEEEeecC
Q 041308 192 AKGKHKTEQEFKQLGFSTGFPHLRAF-ISIIFTLFLSSKS 230 (244)
Q Consensus 192 ~~~~~~t~~e~~~ll~~aGf~~~~~~-~~~~~~~~~~~~~ 230 (244)
....+++.++++++||+.+++. +..+...++++++
T Consensus 240 ----~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ----WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ----SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ----chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 0125678999999999977765 4566667776653
No 103
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.59 E-value=8.3e-15 Score=121.49 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=81.7
Q ss_pred CcceEEEEcCCccH----HHHHHHHHcC----CCCeEEEeec-hHHHHhCCCC---------------------------
Q 041308 65 GVKRLVDVGGSAGD----CLRIILQKHC----FICEGINFDL-PEVVAKAPSI--------------------------- 108 (244)
Q Consensus 65 ~~~~vLDvG~G~G~----~~~~l~~~~p----~~~~~~~~D~-~~~i~~a~~~--------------------------- 108 (244)
+..+|+|+|||||. ++..+++..+ +.+ ++++|+ +.|++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~-I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~ 183 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWK-VFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 183 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEE-EEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeE-EEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCC
Confidence 34799999999998 5566666645 357 999999 9999988652
Q ss_pred ----------CCeeEEeCCCCCC-CC--c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 109 ----------PEVTHIGGDMFKS-IH--V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 109 ----------~~i~~~~gd~~~~-~p--~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.+|.|..+|+.++ ++ . .|+|+|++++++++++...+++++++++|+|||+|++-
T Consensus 184 ~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 184 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2589999999984 55 2 49999999999999988889999999999999999984
No 104
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.58 E-value=2.1e-14 Score=116.20 Aligned_cols=143 Identities=12% Similarity=0.080 Sum_probs=98.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHH----HhCCCCCCeeEEeCCCCCC-----CCc-ceEEEe
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVV----AKAPSIPEVTHIGGDMFKS-----IHV-VDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i----~~a~~~~~i~~~~gd~~~~-----~p~-~D~v~~ 130 (244)
++++.+|||+|||+|.++..+++.. |+.+ ++++|. +.|+ +.+++..++.++.+|+.++ +.. .|+|++
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~-V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~ 152 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGK-AYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYV 152 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSE-EEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEe
Confidence 6788999999999999999999874 5778 999999 8664 4454457899999999764 122 599987
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCC
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aG 210 (244)
.... +++...+++++.+.|||||++++.-.....+... .+ .-..++..+.|+++|
T Consensus 153 d~a~----~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~------------------~~---~e~~~~~~~~L~~~g 207 (232)
T 3id6_C 153 DIAQ----PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTK------------------DP---KEIYKTEVEKLENSN 207 (232)
T ss_dssp CCCC----TTHHHHHHHHHHHHEEEEEEEEEEEC-------C------------------CS---SSSTTHHHHHHHHTT
T ss_pred cCCC----hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCC------------------CH---HHHHHHHHHHHHHCC
Confidence 6443 2344455667777999999999873211100000 00 001123456778899
Q ss_pred CCeEEEEEcc---ceeEEEeecCc
Q 041308 211 FPHLRAFISI---IFTLFLSSKSN 231 (244)
Q Consensus 211 f~~~~~~~~~---~~~~~~~~~~~ 231 (244)
|++.+...+. .++.+++++++
T Consensus 208 f~~~~~~~l~p~~~~h~~v~~~~~ 231 (232)
T 3id6_C 208 FETIQIINLDPYDKDHAIVLSKYK 231 (232)
T ss_dssp EEEEEEEECTTTCSSCEEEEEEEC
T ss_pred CEEEEEeccCCCcCceEEEEEEeC
Confidence 9999988873 36778887764
No 105
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.58 E-value=1.4e-14 Score=113.06 Aligned_cols=142 Identities=10% Similarity=0.072 Sum_probs=106.5
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C--CeeEEeCCCCCCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P--EVTHIGGDMFKSIH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~--~i~~~~gd~~~~~p 123 (244)
.+.+++.+. .++..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.++++ . ++++..+|+.+..+
T Consensus 41 ~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (194)
T 1dus_A 41 TKILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKS-TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK 116 (194)
T ss_dssp HHHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSE-EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred HHHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc
Confidence 445666666 667789999999999999999987 557 999999 9999888753 3 49999999988755
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
. .|+|++...+|+ ..+....+++++.+.|+|||++++...... ..++
T Consensus 117 ~~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~~ 165 (194)
T 1dus_A 117 DRKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ------------------------------GAKS 165 (194)
T ss_dssp TSCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH------------------------------HHHH
T ss_pred cCCceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC------------------------------ChHH
Confidence 4 499999888875 345567899999999999999999765210 0234
Q ss_pred HHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 202 FKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
+.+.+++. |..+++.....+..++.++|
T Consensus 166 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 166 LAKYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHH-hcceEEEecCCcEEEEEEee
Confidence 56666776 66666655555555555544
No 106
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.57 E-value=1e-15 Score=124.19 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=78.5
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC---CCc--ceEEEe-c
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS---IHV--VDAIFM-K 131 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~---~p~--~D~v~~-~ 131 (244)
.+..+|||||||+|.++..+++..+ .+ ++++|+ +.|++.|+++ .+++++.+|+.+. ++. .|+|++ .
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~ 136 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EE-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-Ce-EEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECC
Confidence 4568999999999999999976544 36 999999 9999888753 5799999998653 443 499998 5
Q ss_pred cc--cccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 132 WV--LTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 132 ~~--lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+. .+.+.......++++++++|||||++++.+..
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred cccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 54 34444445567899999999999999998753
No 107
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.57 E-value=3e-15 Score=123.16 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=84.4
Q ss_pred cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCC---CeeEEeCCCCC----CC
Q 041308 51 PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIP---EVTHIGGDMFK----SI 122 (244)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~---~i~~~~gd~~~----~~ 122 (244)
...+.+++.++ ..+..+|||||||+|.++..++++. .+ ++++|+ +.|++.++++. .+.....++.. ..
T Consensus 32 ~~~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g--~~-V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~ 107 (261)
T 3iv6_A 32 SDRENDIFLEN-IVPGSTVAVIGASTRFLIEKALERG--AS-VTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKEL 107 (261)
T ss_dssp CHHHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGG
T ss_pred HHHHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHHHhccceeeeeeccccccccc
Confidence 34566777776 7788999999999999999999874 46 999999 99999888641 12222222221 11
Q ss_pred C-cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 123 H-VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 123 p-~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+ ..|+|++..++||+..++...+++++.++| |||++++.-
T Consensus 108 ~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 108 AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 2 259999999999999888889999999999 999999864
No 108
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.56 E-value=3e-14 Score=113.83 Aligned_cols=95 Identities=13% Similarity=0.121 Sum_probs=74.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHH----HHhCCCCCCeeEEeCCCCCC-----CCc-ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEV----VAKAPSIPEVTHIGGDMFKS-----IHV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~----i~~a~~~~~i~~~~gd~~~~-----~p~-~D~v~~~ 131 (244)
.+++.+|||+|||+|.++..+++..+..+ ++++|+ +.| ++.+++..++.++.+|+.++ ++. .|+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~-V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGI-IYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSE-EEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCE-EEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence 56778999999999999999999887667 999999 764 44454457899999998763 233 4999986
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+.++ ++...++++++++|||||++++.
T Consensus 134 -~~~~---~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 134 -IAQK---NQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp -CCST---THHHHHHHHHHHHEEEEEEEEEE
T ss_pred -ccCh---hHHHHHHHHHHHHhCCCCEEEEE
Confidence 3332 34456699999999999999997
No 109
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.56 E-value=5e-15 Score=124.72 Aligned_cols=154 Identities=10% Similarity=0.044 Sum_probs=99.3
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----C--------CeeEEeCCCCC---------CC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----P--------EVTHIGGDMFK---------SI 122 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~--------~i~~~~gd~~~---------~~ 122 (244)
+..+|||||||+|..+..+++.. ..+ ++++|+ +.|++.|++. . ++++..+|+.. ++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~-v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IAL-LVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSE-EEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCe-EEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 46899999999998777666543 346 999999 9999999863 1 25677888732 22
Q ss_pred Cc--ceEEEeccccccC-CHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC------------CchHHhhhhhcc----c
Q 041308 123 HV--VDAIFMKWVLTTW-TDDECKLIMENYYKALLAGRKLIACEPVLPDDS------------NESQRTRALLEG----D 183 (244)
Q Consensus 123 p~--~D~v~~~~~lh~~-~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~------------~~~~~~~~~~~~----d 183 (244)
+. .|+|++..++|++ ++++...+|++++++|||||++++......... .......+.... +
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 205 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADD 205 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETT
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccc
Confidence 32 4999999999974 444457999999999999999998765211100 000000000000 0
Q ss_pred -H-hh-hhhhccC--ceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 184 -I-FV-MTIYRAK--GKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 184 -~-~~-~~~~~~~--~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
+ .+ ....... -...+.+++.++++++||++++...+.
T Consensus 206 ~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~ 247 (302)
T 2vdw_A 206 RIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFA 247 (302)
T ss_dssp EEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHH
T ss_pred ccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChH
Confidence 0 00 0000001 123567999999999999999987653
No 110
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=117.34 Aligned_cols=146 Identities=10% Similarity=0.017 Sum_probs=99.7
Q ss_pred ccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHH----HHhCCCCCCeeEEeCCCCCC--CC--c--c
Q 041308 58 DGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEV----VAKAPSIPEVTHIGGDMFKS--IH--V--V 125 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~----i~~a~~~~~i~~~~gd~~~~--~p--~--~ 125 (244)
+.++ +++..+|||+|||+|.++..+++.. |..+ ++++|+ +.+ ++.+++..+++++.+|+.+. ++ . .
T Consensus 71 ~~~~-~~~~~~vLDlG~G~G~~~~~la~~~g~~~~-v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~ 148 (233)
T 2ipx_A 71 DQIH-IKPGAKVLYLGAASGTTVSHVSDIVGPDGL-VYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMV 148 (233)
T ss_dssp SCCC-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCE
T ss_pred heec-CCCCCEEEEEcccCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcE
Confidence 3444 6777899999999999999999986 6678 999999 664 44444458899999999874 22 2 4
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|+|++... ..++...+++++.++|||||++++. ....... ........ + .++ .++
T Consensus 149 D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~-~~~~~~~---------~~~~~~~~---------~-~~~-~~~ 203 (233)
T 2ipx_A 149 DVIFADVA----QPDQTRIVALNAHTFLRNGGHFVIS-IKANCID---------STASAEAV---------F-ASE-VKK 203 (233)
T ss_dssp EEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEE-EEHHHHC---------SSSCHHHH---------H-HHH-HHT
T ss_pred EEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEE-Ecccccc---------cCCCHHHH---------H-HHH-HHH
Confidence 99998544 3344457789999999999999983 2110000 00000000 1 223 588
Q ss_pred HHhCCCCeEEEEEccc---eeEEEeecC
Q 041308 206 GFSTGFPHLRAFISII---FTLFLSSKS 230 (244)
Q Consensus 206 l~~aGf~~~~~~~~~~---~~~~~~~~~ 230 (244)
|+++||++++...... +..++++++
T Consensus 204 l~~~Gf~~~~~~~~~~~~~~~~~v~~~~ 231 (233)
T 2ipx_A 204 MQQENMKPQEQLTLEPYERDHAVVVGVY 231 (233)
T ss_dssp TGGGTEEEEEEEECTTTSSSEEEEEEEE
T ss_pred HHHCCCceEEEEecCCccCCcEEEEEEe
Confidence 9999999999766543 456666554
No 111
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.56 E-value=5.3e-15 Score=125.00 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=81.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------------CCeeEEeCCCCCC-----C--
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------------PEVTHIGGDMFKS-----I-- 122 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------------~~i~~~~gd~~~~-----~-- 122 (244)
.+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.+++. .+++++.+|+.+. +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 110 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINK-LVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD 110 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCE-EEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence 35689999999999999999874 5567 999999 9999888753 2789999999764 3
Q ss_pred C--cceEEEeccccccC--CHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 123 H--VVDAIFMKWVLTTW--TDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 123 p--~~D~v~~~~~lh~~--~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ..|+|++..++|++ +.++...+|++++++|||||++++...
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 111 PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 2 24999999999997 445677999999999999999998765
No 112
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.56 E-value=5.8e-15 Score=122.63 Aligned_cols=126 Identities=14% Similarity=0.083 Sum_probs=95.4
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
+.+++.++ ..+..+|||+|||+|.++..+++. .|..+ ++++|+ +.+++.++++ +++++..+|+.+.++.
T Consensus 100 ~~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 177 (275)
T 1yb2_A 100 SYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGT-LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD 177 (275)
T ss_dssp ------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSE-EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred HHHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcC
Confidence 35666666 778899999999999999999998 67788 999999 9898877642 5799999999887654
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
.|+|++ ++++. ..+++++.++|||||++++...... ..+++
T Consensus 178 ~~fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~------------------------------~~~~~ 220 (275)
T 1yb2_A 178 QMYDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPNFD------------------------------QSEKT 220 (275)
T ss_dssp CCEEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESSHH------------------------------HHHHH
T ss_pred CCccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeCCHH------------------------------HHHHH
Confidence 499997 34443 4789999999999999999764110 13456
Q ss_pred HHHHHhCCCCeEEEEE
Q 041308 203 KQLGFSTGFPHLRAFI 218 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~ 218 (244)
.++++++||+.+++..
T Consensus 221 ~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 221 VLSLSASGMHHLETVE 236 (275)
T ss_dssp HHHSGGGTEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEE
Confidence 6777888998877755
No 113
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.55 E-value=9.5e-14 Score=111.80 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=100.9
Q ss_pred hccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhC----CCCCCeeEEeCCCCCC-----CCc-
Q 041308 57 LDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKA----PSIPEVTHIGGDMFKS-----IHV- 124 (244)
Q Consensus 57 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a----~~~~~i~~~~gd~~~~-----~p~- 124 (244)
++.++ +++..+|||+|||+|.++..+++.. |..+ ++++|. +.+++.+ +..++++++.+|+.+. ++.
T Consensus 66 l~~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 143 (227)
T 1g8a_A 66 LKNFP-IKPGKSVLYLGIASGTTASHVSDIVGWEGK-IFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCCCC-CCTTCEEEEETTTSTTHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCC
T ss_pred HHhcC-CCCCCEEEEEeccCCHHHHHHHHHhCCCeE-EEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCC
Confidence 34444 6677899999999999999999885 5567 999999 8665544 3447899999999873 233
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++... .+++...++++++++|||||++++. .........+ . ......+++.+
T Consensus 144 ~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~---------~----------~~~~~~~~l~~ 199 (227)
T 1g8a_A 144 VDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK---------E----------PEQVFREVERE 199 (227)
T ss_dssp EEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS---------C----------HHHHHHHHHHH
T ss_pred ceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC---------C----------hhhhhHHHHHH
Confidence 499996544 2333445699999999999999997 2111110000 0 00123567777
Q ss_pred HHHhCCCCeEEEEEccce---eEEEeecC
Q 041308 205 LGFSTGFPHLRAFISIIF---TLFLSSKS 230 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~~~---~~~~~~~~ 230 (244)
+ .++ |++++....... ..++++++
T Consensus 200 l-~~~-f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 200 L-SEY-FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp H-HTT-SEEEEEEECTTTSSSEEEEEEEC
T ss_pred H-Hhh-ceeeeEeccCcccCCCEEEEEEe
Confidence 7 788 999998876433 56666654
No 114
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.55 E-value=1.2e-15 Score=121.23 Aligned_cols=145 Identities=14% Similarity=-0.002 Sum_probs=91.7
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCC------
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIH------ 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p------ 123 (244)
+++.++...+..+|||+|||+|.++..+++.+|+.+ ++++|+ +.+++.++++ .+++++.+|+.++++
T Consensus 21 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 99 (215)
T 4dzr_A 21 AIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVS-VTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERG 99 (215)
T ss_dssp HHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEE-EEEEECC-------------------CCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhcc
Confidence 444443125678999999999999999999998888 999999 9999999875 168888888876543
Q ss_pred -cceEEEeccccc------cCCHHHH------------------HHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhh
Q 041308 124 -VVDAIFMKWVLT------TWTDDEC------------------KLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRA 178 (244)
Q Consensus 124 -~~D~v~~~~~lh------~~~~~~~------------------~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~ 178 (244)
..|+|++...++ +++++.. ..+++++.++|||||++++++...
T Consensus 100 ~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------ 167 (215)
T 4dzr_A 100 RPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH------------ 167 (215)
T ss_dssp CCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT------------
T ss_pred CcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC------------
Confidence 249999964443 3333222 678999999999999965554310
Q ss_pred hhcccHhhhhhhccCceecCHHHHHHHHH--hCCCCeEEEEEc-cceeEEEeecCc
Q 041308 179 LLEGDIFVMTIYRAKGKHKTEQEFKQLGF--STGFPHLRAFIS-IIFTLFLSSKSN 231 (244)
Q Consensus 179 ~~~~d~~~~~~~~~~~~~~t~~e~~~ll~--~aGf~~~~~~~~-~~~~~~~~~~~~ 231 (244)
...+++.++++ ++||..+++... .+...++++++.
T Consensus 168 ------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 168 ------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp ------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEEC
T ss_pred ------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEc
Confidence 12456788888 999988776554 445566666543
No 115
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.55 E-value=6e-15 Score=114.01 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=83.4
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV-- 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~-- 124 (244)
.+++.++ ..+..+|||+|||+|.++..+++.+|..+ ++++|+ +.+++.++++ .++ ++.+|..+.++.
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTT-AVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEE-EEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCe-EEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 3455555 66778999999999999999999988888 999999 9899888752 378 888998766443
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++...+|+ ..+++++.+.|+|||++++.+.
T Consensus 93 ~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp SCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 599999999987 4789999999999999998664
No 116
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.54 E-value=2.9e-14 Score=111.11 Aligned_cols=133 Identities=12% Similarity=0.001 Sum_probs=91.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC--C-Cc-ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS--I-HV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~--~-p~-~D~v~~~ 131 (244)
.++..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.|+++ ++++++.+|.... + +. .|+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKK-VYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSE-EEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 466789999999999999999987 567 999999 9999988763 6899999776441 2 23 4999876
Q ss_pred c-cccc------CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 132 W-VLTT------WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 132 ~-~lh~------~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
. .+++ ...+....+++++.++|||||++++......+... .. .....+|.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~---------------------~~~~~~~~~ 154 (185)
T 3mti_A 97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGD-ME---------------------KDAVLEYVI 154 (185)
T ss_dssp EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------C-HH---------------------HHHHHHHHH
T ss_pred CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCH-HH---------------------HHHHHHHHH
Confidence 3 2222 02355678899999999999999997653222110 00 011345566
Q ss_pred HHHhCCCCeEEEEEcc
Q 041308 205 LGFSTGFPHLRAFISI 220 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~ 220 (244)
.+.+.+|.+.......
T Consensus 155 ~l~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 155 GLDQRVFTAMLYQPLN 170 (185)
T ss_dssp HSCTTTEEEEEEEESS
T ss_pred hCCCceEEEEEehhhc
Confidence 6667788888877653
No 117
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=115.18 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=84.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc--ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV--VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~--~D~v~~~~~lh 135 (244)
.+..+|||+|||+|.++..+++..+. + ++++|+ +.+++.+++. +++++..+|+.+. ++. .|+|++..++|
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~-v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-N-VTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-C-EEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-c-EEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 56689999999999999999988664 7 999999 9999887753 6899999999774 543 49999999988
Q ss_pred cCC-------------HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 136 TWT-------------DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~~~-------------~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
++. .++...+++++.++|||||++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 765 44567899999999999999999875
No 118
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.52 E-value=5.5e-14 Score=111.70 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=96.2
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C-CeeEEeCCCCCC---CC
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P-EVTHIGGDMFKS---IH 123 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~-~i~~~~gd~~~~---~p 123 (244)
.++..++ ..+..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.++++ + +++++.+|+.+. .+
T Consensus 46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~-v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 121 (204)
T 3njr_A 46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGR-AITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP 121 (204)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCE-EEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence 3555555 677789999999999999999987 567 999999 9999988753 4 899999999874 33
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHH
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFK 203 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~ 203 (244)
..|+|++...+ + .. +++++.++|||||++++..... .+..++.
T Consensus 122 ~~D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~------------------------------~~~~~~~ 164 (204)
T 3njr_A 122 LPEAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTL------------------------------ESETLLT 164 (204)
T ss_dssp CCSEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSH------------------------------HHHHHHH
T ss_pred CCCEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCc------------------------------ccHHHHH
Confidence 46999987644 1 23 8999999999999999855311 0145667
Q ss_pred HHHHhCCCCeEEEEEc
Q 041308 204 QLGFSTGFPHLRAFIS 219 (244)
Q Consensus 204 ~ll~~aGf~~~~~~~~ 219 (244)
+++++.|+++.++...
T Consensus 165 ~~l~~~g~~i~~i~~~ 180 (204)
T 3njr_A 165 QLHARHGGQLLRIDIA 180 (204)
T ss_dssp HHHHHHCSEEEEEEEE
T ss_pred HHHHhCCCcEEEEEee
Confidence 8889999888886443
No 119
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.52 E-value=3.4e-14 Score=131.39 Aligned_cols=99 Identities=22% Similarity=0.275 Sum_probs=85.1
Q ss_pred CCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCC------------CCCeeEEeCCCCCC-CCc--ce
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPS------------IPEVTHIGGDMFKS-IHV--VD 126 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~------------~~~i~~~~gd~~~~-~p~--~D 126 (244)
.+..+|||||||+|.++..+++.. |..+ ++++|+ +.|++.|++ ..+++++.+|+.+. .+. .|
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~-VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD 798 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQT-IIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD 798 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCE-EEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence 356899999999999999999987 4467 999999 999998865 25799999999775 332 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+|++..++||+++++...++++++++|||| .+++..+
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 999999999999998888999999999999 7777654
No 120
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.51 E-value=5.6e-14 Score=113.25 Aligned_cols=128 Identities=14% Similarity=0.105 Sum_probs=96.2
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCC--CCCCCc--ceEEEec
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDM--FKSIHV--VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~--~~~~p~--~D~v~~~ 131 (244)
.++..+|||+||| +|.++..+++.. ..+ ++++|+ +.+++.++++ .+++++.+|+ +.+++. .|+|++.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~n 130 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCK-VTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSA 130 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCE-EEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEEC
Confidence 4677899999999 999999999886 567 999999 9999988753 3799999996 344543 4999998
Q ss_pred cccccCCHHH-----------------HHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCc
Q 041308 132 WVLTTWTDDE-----------------CKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG 194 (244)
Q Consensus 132 ~~lh~~~~~~-----------------~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 194 (244)
..+++..+.+ ...+++++.+.|||||++++.-.. . .
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~---~--------------------- 183 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD---K---E--------------------- 183 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES---C---H---------------------
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc---c---H---------------------
Confidence 7776654422 267899999999999999985321 0 0
Q ss_pred eecCHHHHHHHHHhCCCCeEEEEEccc
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAFISII 221 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~~~~~ 221 (244)
...+++.++++++||++..+....+
T Consensus 184 --~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 184 --KLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred --hHHHHHHHHHHHcCCceEEEEecCC
Confidence 1156788999999998777755443
No 121
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.51 E-value=7.2e-14 Score=114.41 Aligned_cols=128 Identities=15% Similarity=0.116 Sum_probs=100.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p 123 (244)
...++..++ ..+..+|||+|||+|.++..+++. .|..+ ++++|. +.+++.|+++ .++++..+|+.+.++
T Consensus 82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 159 (255)
T 3mb5_A 82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGR-VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE 159 (255)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC
T ss_pred HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeE-EEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC
Confidence 344666666 778899999999999999999998 77888 999999 9999988863 459999999987766
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
. .|+|++. .++. ..+++++.++|+|||++++...... ..++
T Consensus 160 ~~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~~ 202 (255)
T 3mb5_A 160 EENVDHVILD-----LPQP--ERVVEHAAKALKPGGFFVAYTPCSN------------------------------QVMR 202 (255)
T ss_dssp CCSEEEEEEC-----SSCG--GGGHHHHHHHEEEEEEEEEEESSHH------------------------------HHHH
T ss_pred CCCcCEEEEC-----CCCH--HHHHHHHHHHcCCCCEEEEEECCHH------------------------------HHHH
Confidence 5 4999873 3333 4689999999999999998653110 1445
Q ss_pred HHHHHHhCC--CCeEEEEEc
Q 041308 202 FKQLGFSTG--FPHLRAFIS 219 (244)
Q Consensus 202 ~~~ll~~aG--f~~~~~~~~ 219 (244)
+.++++++| |..+++...
T Consensus 203 ~~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 203 LHEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHHcCCCccccEEEEE
Confidence 678888999 988876443
No 122
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.51 E-value=6.4e-14 Score=116.70 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=97.7
Q ss_pred HHHhccCCCCC-CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhC-CCCCCeeEEe-CCCCC----CCCc-
Q 041308 54 TSVLDGYDGFK-GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKA-PSIPEVTHIG-GDMFK----SIHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a-~~~~~i~~~~-gd~~~----~~p~- 124 (244)
..+++.+. .. +..+|||+|||||.++..+++. +..+ ++++|+ +.|++.+ +..+++.... .|+.. .+|.
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~-V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~ 150 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKL-VYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEG 150 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTC
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCC
Confidence 34556665 43 4579999999999999999876 3446 999999 9998873 4446654433 34321 1443
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCch-HHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNES-QRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
.|+|++..++|++ ..+|++++++|+|||+++++- .|+-.... .........|. ....++.+++
T Consensus 151 ~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~--------~~~~~~~~~v 215 (291)
T 3hp7_A 151 LPSFASIDVSFISL-----NLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRES--------SIHEKVLETV 215 (291)
T ss_dssp CCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCH--------HHHHHHHHHH
T ss_pred CCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCH--------HHHHHHHHHH
Confidence 5999988888764 478999999999999999862 11110000 00000011111 1122467899
Q ss_pred HHHHHhCCCCeEEEEEcc
Q 041308 203 KQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~~ 220 (244)
.++++++||.+..+...+
T Consensus 216 ~~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 216 TAFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHHTTEEEEEEEECS
T ss_pred HHHHHHCCCEEEEEEECC
Confidence 999999999999887754
No 123
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.50 E-value=1.1e-15 Score=125.26 Aligned_cols=145 Identities=10% Similarity=-0.012 Sum_probs=96.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCC----CCC-----cceE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFK----SIH-----VVDA 127 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~----~~p-----~~D~ 127 (244)
+..+|||+|||+|.++..++++.|..+ ++++|+ +.+++.|+++ .+++++.+|+.+ +++ ..|+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWY-FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 457999999999999999999888888 999999 9999988753 469999999643 444 2599
Q ss_pred EEeccccccCCH-------------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCc
Q 041308 128 IFMKWVLTTWTD-------------DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG 194 (244)
Q Consensus 128 v~~~~~lh~~~~-------------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 194 (244)
|++...+|+... +....++++++++|||||.+.+++...... .......... ....+
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~---------~~~l~~~g~~-~~~~~ 213 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS---------LQLKKRLRWY-SCMLG 213 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH---------HHHGGGBSCE-EEEES
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH---------HhcccceEEE-EECCC
Confidence 999876665431 112356789999999999998876532210 0000000000 01113
Q ss_pred eecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 195 KHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 195 ~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...+.+++.++++++||+.+++....
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEEe
Confidence 33445889999999999998887654
No 124
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.50 E-value=9.4e-15 Score=117.82 Aligned_cols=117 Identities=9% Similarity=0.030 Sum_probs=91.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCC--C-c--ceEEEecccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSI--H-V--VDAIFMKWVLTT 136 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~--p-~--~D~v~~~~~lh~ 136 (244)
++..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.++++ ++++++.+|+.+.+ + . .|+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~---- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AAR-WAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR---- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSE-EEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC----
Confidence 45689999999999999999987 456 999999 9999988764 78999999997653 3 3 49999871
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
+...+++++.++|||||+++... ...+.+++.++++++||+...+
T Consensus 120 ----~~~~~l~~~~~~LkpgG~l~~~~-------------------------------~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 ----GPTSVILRLPELAAPDAHFLYVG-------------------------------PRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp ----CCSGGGGGHHHHEEEEEEEEEEE-------------------------------SSSCCTHHHHHHHHTTCEEEEE
T ss_pred ----CHHHHHHHHHHHcCCCcEEEEeC-------------------------------CcCCHHHHHHHHHHCCCeEEEE
Confidence 12478999999999999999100 0123456889999999999888
Q ss_pred EEccce
Q 041308 217 FISIIF 222 (244)
Q Consensus 217 ~~~~~~ 222 (244)
......
T Consensus 165 ~~~~~~ 170 (226)
T 3m33_A 165 DHVSVL 170 (226)
T ss_dssp EEEEEE
T ss_pred Eeeeec
Confidence 765433
No 125
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.50 E-value=4.1e-14 Score=116.26 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=96.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc--ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV--VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~--~D~v~~~~~lh 135 (244)
++..+|||+|||+|.++..+++..+ + ++++|+ +.+++.++++ -.+++..+|+.+.++. .|+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~-v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--K-ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--e-EEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 4568999999999999999998765 7 999999 9999888763 1289999998765543 59999875544
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
+ ...+++++.+.|+|||++++.+... .+.+++.++++++||++++
T Consensus 196 ~-----~~~~l~~~~~~LkpgG~lils~~~~------------------------------~~~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 196 L-----HAALAPRYREALVPGGRALLTGILK------------------------------DRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp H-----HHHHHHHHHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTCEEEE
T ss_pred H-----HHHHHHHHHHHcCCCCEEEEEeecc------------------------------CCHHHHHHHHHHCCCEEEE
Confidence 3 4688999999999999999965421 1256789999999999999
Q ss_pred EEEcccee
Q 041308 216 AFISIIFT 223 (244)
Q Consensus 216 ~~~~~~~~ 223 (244)
+.....-.
T Consensus 241 ~~~~~~W~ 248 (254)
T 2nxc_A 241 EAAEGEWV 248 (254)
T ss_dssp EEEETTEE
T ss_pred EeccCCeE
Confidence 87655433
No 126
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.50 E-value=4.6e-14 Score=122.23 Aligned_cols=107 Identities=14% Similarity=0.090 Sum_probs=88.0
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------CCeeEEeCCCCCCCCc
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------~~i~~~~gd~~~~~p~ 124 (244)
.+++.++ .....+|||+|||+|.++..+++.+|..+ ++++|. +.+++.++++ .++++..+|++++++.
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~-V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCE-EEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 3666666 45558999999999999999999999999 999999 9999988863 2588899999988664
Q ss_pred --ceEEEecccccc---CCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 125 --VDAIFMKWVLTT---WTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 --~D~v~~~~~lh~---~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|+|++...+|+ +.+.....+++++.+.|||||+++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 599999999886 334455678999999999999999965
No 127
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.49 E-value=3.7e-14 Score=111.63 Aligned_cols=135 Identities=14% Similarity=0.046 Sum_probs=97.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC--C-Cc-ceEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS--I-HV-VDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~--~-p~-~D~v~ 129 (244)
.++..+|||+|||+|.++..+++.. |..+ ++++|+ +.+++.++++ ++++++.+|+.+. . +. .|+|+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGR-VFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCE-EEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 4567899999999999999999986 5667 999999 9999988764 5799999997553 2 22 49999
Q ss_pred ecccc-------ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 130 MKWVL-------TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 130 ~~~~l-------h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
+...+ +....+....+++++.++|||||++++.......... .. .....+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~-~~---------------------~~~~~~~ 156 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGF-EE---------------------KEKVLEF 156 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBS-HH---------------------HHHHHHH
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcH-HH---------------------HHHHHHH
Confidence 87655 1122334567999999999999999998754322210 00 0012344
Q ss_pred HHHHHhCCCCeEEEEEcc
Q 041308 203 KQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~~~ 220 (244)
.+.+.+.+|++.....+.
T Consensus 157 ~~~l~~~~~~v~~~~~~~ 174 (197)
T 3eey_A 157 LKGVDQKKFIVQRTDFIN 174 (197)
T ss_dssp HTTSCTTTEEEEEEEETT
T ss_pred HHhCCCCcEEEEEEEecc
Confidence 445566788888887754
No 128
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.49 E-value=4.1e-14 Score=119.27 Aligned_cols=140 Identities=15% Similarity=0.098 Sum_probs=99.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCC---Cc--ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSI---HV--VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~---p~--~D~ 127 (244)
+++.+|||||||+|.+++.+++..+..+ ++++|+ +.+++.++++ ++++++.+|+.+.. +. .|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEH-CDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 4568999999999999999998766677 999999 9999887742 68999999986542 23 499
Q ss_pred EEeccccccCCHHHH--HHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 128 IFMKWVLTTWTDDEC--KLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 128 v~~~~~lh~~~~~~~--~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|++....+..+.... ..++++++++|||||++++.... ++ .+ ....+++.+.
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~-------~~-------~~------------~~~~~~~~~~ 226 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES-------IW-------LD------------LELIEKMSRF 226 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECC-------TT-------TC------------HHHHHHHHHH
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC-------cc-------cc------------hHHHHHHHHH
Confidence 999776655443222 47899999999999999986321 11 00 0125678899
Q ss_pred HHhCCCCeEEEEEcc------ceeEEEeecC
Q 041308 206 GFSTGFPHLRAFISI------IFTLFLSSKS 230 (244)
Q Consensus 206 l~~aGf~~~~~~~~~------~~~~~~~~~~ 230 (244)
++++||..+++.... +..+++++.+
T Consensus 227 l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 227 IRETGFASVQYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp HHHHTCSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred HHhCCCCcEEEEEeecccccCcceEEEEEeC
Confidence 999999998887652 3344555554
No 129
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.49 E-value=3.2e-14 Score=110.81 Aligned_cols=121 Identities=18% Similarity=0.118 Sum_probs=94.5
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC---c
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---V 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---~ 124 (244)
+++.++ ..+..+|||+|||+|.++..+++.. .+ ++++|. +.+++.++++ .++++..+|+.+.++ .
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SE-EEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CE-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 444444 6677899999999999999999877 56 999999 9999888752 589999999866433 3
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
.|+|++...++++ ..+++++.++|+|||++++..... .+..++.+
T Consensus 101 ~D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~~~------------------------------~~~~~~~~ 145 (192)
T 1l3i_A 101 IDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAILL------------------------------ETKFEAME 145 (192)
T ss_dssp EEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECBH------------------------------HHHHHHHH
T ss_pred CCEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEecCc------------------------------chHHHHHH
Confidence 5999999887652 578999999999999999865410 01456788
Q ss_pred HHHhCCCCeEE
Q 041308 205 LGFSTGFPHLR 215 (244)
Q Consensus 205 ll~~aGf~~~~ 215 (244)
++++.||.+..
T Consensus 146 ~l~~~g~~~~~ 156 (192)
T 1l3i_A 146 CLRDLGFDVNI 156 (192)
T ss_dssp HHHHTTCCCEE
T ss_pred HHHHCCCceEE
Confidence 89999995443
No 130
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.49 E-value=2.4e-14 Score=116.52 Aligned_cols=122 Identities=13% Similarity=-0.011 Sum_probs=94.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-C----Cc-ceEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-I----HV-VDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~----p~-~D~v~ 129 (244)
+++..+|||+|||+|.++..++...|+.+ ++++|. +.+++.++++ ++++++.+|+.+. . +. .|+|+
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLH-VTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVT 146 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEE
Confidence 34668999999999999999998888888 999999 9999888753 5799999998542 2 22 49999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
+..+ .+ ...+++++.++|+|||++++.+.... . ...+++.+.++++
T Consensus 147 ~~~~----~~--~~~~l~~~~~~LkpgG~l~~~~g~~~-----~-----------------------~~~~~~~~~l~~~ 192 (240)
T 1xdz_A 147 ARAV----AR--LSVLSELCLPLVKKNGLFVALKAASA-----E-----------------------EELNAGKKAITTL 192 (240)
T ss_dssp EECC----SC--HHHHHHHHGGGEEEEEEEEEEECC-C-----H-----------------------HHHHHHHHHHHHT
T ss_pred Eecc----CC--HHHHHHHHHHhcCCCCEEEEEeCCCc-----h-----------------------HHHHHHHHHHHHc
Confidence 8763 22 35889999999999999998642110 0 0134567888999
Q ss_pred CCCeEEEEEc
Q 041308 210 GFPHLRAFIS 219 (244)
Q Consensus 210 Gf~~~~~~~~ 219 (244)
||++.++..+
T Consensus 193 g~~~~~~~~~ 202 (240)
T 1xdz_A 193 GGELENIHSF 202 (240)
T ss_dssp TEEEEEEEEE
T ss_pred CCeEeEEEEE
Confidence 9999887653
No 131
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.47 E-value=2e-13 Score=109.04 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=78.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc--ceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV--VDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~--~D~v~~~~ 132 (244)
+..+|||+|||+|.++..+++.+|+.+ ++++|+ +.+++.++++ ++++++.+|+.+. ++. .|+|++..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~-v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDIN-YIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCC-EEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 457999999999999999999999888 999999 9999888753 6899999999762 333 49999886
Q ss_pred ccccCCHH------HHHHHHHHHHHHcCCCCEEEEec
Q 041308 133 VLTTWTDD------ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 133 ~lh~~~~~------~~~~~l~~~~~~L~pgG~lii~d 163 (244)
..++.... ....+++++.++|+|||.+++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 54322210 11478999999999999999853
No 132
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.47 E-value=3.1e-14 Score=121.92 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=90.3
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc-c
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV-V 125 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~-~ 125 (244)
.+.+++.++ .....+|||+|||+|.++..+++.+|..+ ++++|. +.+++.++++ .++++..+|+++..+. .
T Consensus 185 ~~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~f 262 (343)
T 2pjd_A 185 SQLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIR-LTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRF 262 (343)
T ss_dssp HHHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCB-CEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCE
T ss_pred HHHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCe
Confidence 344666665 44567999999999999999999999888 999999 8999888753 3467889999776443 5
Q ss_pred eEEEecccccc---CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 126 DAIFMKWVLTT---WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 126 D~v~~~~~lh~---~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+|++...+|+ ...+....++++++++|||||+++++..
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 99999999986 2455567999999999999999999765
No 133
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.47 E-value=1.3e-13 Score=114.89 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=78.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceEEEeccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~v~~~~~ 133 (244)
++++.+|||||||+|.++..++.+.++.+ ++++|+ +.|++.|+++ ++++++.+|+.+ +|. +|+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~-V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~ 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMR-VNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAAL 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCE-EEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTT
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCE-EEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCC
Confidence 67889999999999988766666678888 999999 9999999864 689999999966 343 499997654
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.++ ..+++++++++|||||++++.+.
T Consensus 198 ---~~d--~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 ---AEP--KRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp ---CSC--HHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ---ccC--HHHHHHHHHHHcCCCcEEEEEcC
Confidence 233 35899999999999999999763
No 134
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.46 E-value=2.9e-13 Score=118.62 Aligned_cols=112 Identities=13% Similarity=0.223 Sum_probs=87.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhC-------CC--------CCCeeEEeC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKA-------PS--------IPEVTHIGG 116 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a-------~~--------~~~i~~~~g 116 (244)
+..+++.++ ..+..+|||+|||+|.++..+++..+..+ ++++|+ +.+++.| ++ ..+++++.+
T Consensus 231 v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~-V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g 308 (433)
T 1u2z_A 231 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCAL-SFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 308 (433)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence 345666666 77889999999999999999999887667 999999 8887776 43 258999987
Q ss_pred CCCC-C--C----CcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 117 DMFK-S--I----HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 117 d~~~-~--~----p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
|.+. + + ..+|+|++.++++. ++....|+++.+.|||||++++.+...+..
T Consensus 309 D~~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 309 KSFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred CccccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 6543 2 2 22599998877632 345678999999999999999998776654
No 135
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.45 E-value=3.4e-14 Score=114.16 Aligned_cols=98 Identities=9% Similarity=0.001 Sum_probs=77.4
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC----CCc--ceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS----IHV--VDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~----~p~--~D~v~~~ 131 (244)
+..+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.++++ .++.++.+|+.+. ++. .|.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~-v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQD-FLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCe-EEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 457999999999999999999999999 999999 9999887643 6799999998653 444 3888877
Q ss_pred cccccCCHHHH------HHHHHHHHHHcCCCCEEEEec
Q 041308 132 WVLTTWTDDEC------KLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 132 ~~lh~~~~~~~------~~~l~~~~~~L~pgG~lii~d 163 (244)
+.......... ..++++++++|||||++++..
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 44332222111 258999999999999999865
No 136
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.45 E-value=1e-13 Score=112.43 Aligned_cols=149 Identities=16% Similarity=0.112 Sum_probs=88.6
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeC-CCC----CCCCc--c
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGG-DMF----KSIHV--V 125 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~g-d~~----~~~p~--~ 125 (244)
.+++.++......+|||||||||.++..+++... .+ ++++|+ +.|++.+++. +++..... ++. ++++. .
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~-~~-V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGA-KL-VYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP 104 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC-SE-EEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCC-CE-EEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC
Confidence 3444554123456999999999999999998732 36 999999 8998876543 44332211 110 11221 2
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCch-HHhhhhhcccHhhhhhhccCceecCHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNES-QRTRALLEGDIFVMTIYRAKGKHKTEQEFKQ 204 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ 204 (244)
|.+.+..++.++ ..+|++++++|||||++++.- .+.-.... .........+. .....+.+++.+
T Consensus 105 d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~--------~~~~~~~~~l~~ 169 (232)
T 3opn_A 105 SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDP--------KVHQMTIEKVLK 169 (232)
T ss_dssp SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCH--------HHHHHHHHHHHH
T ss_pred CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCc--------chhHHHHHHHHH
Confidence 444444444433 478999999999999999852 11000000 00000000011 112246889999
Q ss_pred HHHhCCCCeEEEEEcc
Q 041308 205 LGFSTGFPHLRAFISI 220 (244)
Q Consensus 205 ll~~aGf~~~~~~~~~ 220 (244)
+++++||++..+...+
T Consensus 170 ~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 170 TATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHTEEEEEEEECS
T ss_pred HHHHCCCEEEEEEEcc
Confidence 9999999999887653
No 137
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.45 E-value=1.2e-13 Score=106.76 Aligned_cols=114 Identities=16% Similarity=0.048 Sum_probs=86.7
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCC-C---Cc--ceEEEeccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKS-I---HV--VDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~-~---p~--~D~v~~~~~ 133 (244)
.+++.+|||+|||+ - . +|. +.|++.++++ .++++..+|+.+. . +. .|+|++.++
T Consensus 10 ~~~g~~vL~~~~g~--------------v-~--vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~ 72 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS--------------S-P--VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLV 72 (176)
T ss_dssp CCTTSEEEEEECTT--------------S-C--HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEecCCc--------------e-e--eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECCh
Confidence 67889999999986 1 2 788 9999988764 4699999998654 3 43 499999999
Q ss_pred cccC-CHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCC
Q 041308 134 LTTW-TDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 134 lh~~-~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 212 (244)
+||+ ++. ..++++++++|||||++++.+....... .....++.++|.++++++||
T Consensus 73 l~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~l~~aGf- 128 (176)
T 2ld4_A 73 PGSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVD---------------------NNSKVKTASKLCSALTLSGL- 128 (176)
T ss_dssp TTCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSC---------------------SSSSSCCHHHHHHHHHHTTC-
T ss_pred hhhcccCH--HHHHHHHHHHCCCCEEEEEEcccccccc---------------------cccccCCHHHHHHHHHHCCC-
Confidence 9999 654 5899999999999999999654322110 01112578999999999999
Q ss_pred eEEEEE
Q 041308 213 HLRAFI 218 (244)
Q Consensus 213 ~~~~~~ 218 (244)
+. +..
T Consensus 129 i~-~~~ 133 (176)
T 2ld4_A 129 VE-VKE 133 (176)
T ss_dssp EE-EEE
T ss_pred cE-eec
Confidence 44 544
No 138
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.43 E-value=3.2e-13 Score=110.53 Aligned_cols=126 Identities=16% Similarity=0.164 Sum_probs=98.4
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p 123 (244)
..++..++ +.+..+|||+|||+|.++..+++. .|..+ ++++|. +.+++.++++ +++++..+|+.+. ++
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGL-VESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 35667776 778899999999999999999998 67778 999999 9998888753 6899999999876 66
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHH
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQE 201 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e 201 (244)
. .|+|++. .++. ..+++++.++|+|||++++..... . ...+
T Consensus 164 ~~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~------~------------------------~~~~ 206 (258)
T 2pwy_A 164 EAAYDGVALD-----LMEP--WKVLEKAALALKPDRFLVAYLPNI------T------------------------QVLE 206 (258)
T ss_dssp TTCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEESCH------H------------------------HHHH
T ss_pred CCCcCEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeCCH------H------------------------HHHH
Confidence 4 4999872 3333 378999999999999999977421 0 0234
Q ss_pred HHHHHHhCCCCeEEEEE
Q 041308 202 FKQLGFSTGFPHLRAFI 218 (244)
Q Consensus 202 ~~~ll~~aGf~~~~~~~ 218 (244)
+.+.++++||..+++..
T Consensus 207 ~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 207 LVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHCCCceEEEEE
Confidence 56677789998777654
No 139
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.43 E-value=1.2e-13 Score=123.28 Aligned_cols=106 Identities=15% Similarity=0.039 Sum_probs=86.0
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCC-CCCc
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFK-SIHV 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~-~~p~ 124 (244)
.+.+++.+. ..+..+|||||||+|.++..+++ .+..+ ++++|+..+++.|++. ++++++.+|+.+ +++.
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~-V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~ 223 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARK-IYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE 223 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCE-EEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCC
Confidence 344566554 45568999999999999998887 46667 9999994488777642 689999999987 3555
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.|+|++..+++|+.+++....+.++++.|||||++++
T Consensus 224 ~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 224 QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp CEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred CeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 5999998888888777777888999999999999985
No 140
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.42 E-value=2.4e-13 Score=108.68 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=76.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc--ceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV--VDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~--~D~v~~~~ 132 (244)
+..+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.|+++ ++++++.+|+.+. ++. .|.|++..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~-v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDIN-YIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCC-EEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 457999999999999999999999999 999999 9999888752 6899999998752 444 38887654
Q ss_pred ccccCCHH------HHHHHHHHHHHHcCCCCEEEEec
Q 041308 133 VLTTWTDD------ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 133 ~lh~~~~~------~~~~~l~~~~~~L~pgG~lii~d 163 (244)
...+.... ....+++++.++|||||.+++..
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 33221110 02478999999999999999854
No 141
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.42 E-value=3.2e-13 Score=110.42 Aligned_cols=108 Identities=16% Similarity=0.085 Sum_probs=84.9
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHH--cCCCCeEEEeec-hHHHHhCCCC---C-------C------------
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQK--HCFICEGINFDL-PEVVAKAPSI---P-------E------------ 110 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~~D~-~~~i~~a~~~---~-------~------------ 110 (244)
+++.+. ..+..+|||+|||+|.++..+++. .+..+ ++++|+ +.+++.|+++ . +
T Consensus 43 ~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~-v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 43 ALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQ-VIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEE-EEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCe-EEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 444443 335579999999999999999988 67777 999999 9999988742 2 2
Q ss_pred -------------ee-------------EEeCCCCCCC------Cc--ceEEEeccccccCCH-------HHHHHHHHHH
Q 041308 111 -------------VT-------------HIGGDMFKSI------HV--VDAIFMKWVLTTWTD-------DECKLIMENY 149 (244)
Q Consensus 111 -------------i~-------------~~~gd~~~~~------p~--~D~v~~~~~lh~~~~-------~~~~~~l~~~ 149 (244)
++ +..+|+++.. +. .|+|+++..+++..+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 66 9999998865 33 499999877665543 5567899999
Q ss_pred HHHcCCCCEEEEeccc
Q 041308 150 YKALLAGRKLIACEPV 165 (244)
Q Consensus 150 ~~~L~pgG~lii~d~~ 165 (244)
.++|+|||++++++..
T Consensus 201 ~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 201 ASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHSCTTCEEEEEESS
T ss_pred HHhcCCCcEEEEeCcc
Confidence 9999999999996543
No 142
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.42 E-value=5.7e-13 Score=110.84 Aligned_cols=121 Identities=14% Similarity=0.026 Sum_probs=94.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEecc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~ 132 (244)
.+++.+|||+|||+|.++..+++..+. + ++++|+ +.+++.++++ .+++++.+|+.+..+. .|+|++..
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~-V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~ 200 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-K-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY 200 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-E-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-E-EEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECC
Confidence 345789999999999999999998876 7 999999 9999888753 4599999999886443 59998864
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 212 (244)
..+ ...+++++.++|+|||++++.+....... .....+++.+.++++||+
T Consensus 201 p~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~------------------------~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 201 VVR------THEFIPKALSIAKDGAIIHYHNTVPEKLM------------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp CSS------GGGGHHHHHHHEEEEEEEEEEEEEEGGGT------------------------TTTTHHHHHHHHHHTTCE
T ss_pred chh------HHHHHHHHHHHCCCCeEEEEEEeeccccc------------------------cccHHHHHHHHHHHcCCe
Confidence 422 24789999999999999999876421110 012356778999999998
Q ss_pred eEE
Q 041308 213 HLR 215 (244)
Q Consensus 213 ~~~ 215 (244)
...
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 776
No 143
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.42 E-value=2.9e-13 Score=107.51 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=83.6
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~- 124 (244)
...+++.++ .++..+|||+|||+|.++..+++. ..+ ++++|. +.+++.++++ +++++..+|..+..+.
T Consensus 66 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (210)
T 3lbf_A 66 VARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQH-VCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR 141 (210)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCE-EEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC
Confidence 344666666 677899999999999999999988 456 999999 9999888753 5799999999876432
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.|+|++...+|++++ ++.+.|||||++++.-..
T Consensus 142 ~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 142 APFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred CCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 499999999999886 478899999999997553
No 144
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.41 E-value=1.4e-13 Score=113.15 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=98.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCc--ceEEEeccccccCCHH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWTDD 140 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~~~ 140 (244)
+..+|||||||+|.++..+++. ..+ ++++|+ +.+++.+++...-.++.+|+.+. ++. .|+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFE-VVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCe-EEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 5689999999999999999987 356 999999 99999887642223888998764 443 4999998877666433
Q ss_pred HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhh-hhhcccHhh--hh-hhcc--------CceecCHHHHHHHHHh
Q 041308 141 ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTR-ALLEGDIFV--MT-IYRA--------KGKHKTEQEFKQLGFS 208 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~-~~~~~d~~~--~~-~~~~--------~~~~~t~~e~~~ll~~ 208 (244)
...+|++++++|||||++++........ .... ....+.... .. .... ....++.+++.++
T Consensus 131 -~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--- 202 (260)
T 2avn_A 131 -KDKAFSEIRRVLVPDGLLIATVDNFYTF----LQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL--- 202 (260)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEBHHHH----HHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---
T ss_pred -HHHHHHHHHHHcCCCeEEEEEeCChHHH----HHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh---
Confidence 5689999999999999999876532100 0000 000000000 00 0000 0124688888888
Q ss_pred CCCCeEEEEEccce
Q 041308 209 TGFPHLRAFISIIF 222 (244)
Q Consensus 209 aGf~~~~~~~~~~~ 222 (244)
+||+++++......
T Consensus 203 aGf~~~~~~~~~~~ 216 (260)
T 2avn_A 203 EGFETVDIRGIGVM 216 (260)
T ss_dssp TTEEEEEEEEECSS
T ss_pred cCceEEEEECCCCc
Confidence 99999998876543
No 145
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.41 E-value=2.2e-13 Score=110.65 Aligned_cols=139 Identities=8% Similarity=-0.079 Sum_probs=106.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc--ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV--VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~--~D~v~~~~~lh 135 (244)
.++.+|||+|||+|-++..+....|..+ ++++|+ +.+++.++++ .+.++...|+....|. +|++++..++|
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~-y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETV-YIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLP 209 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCE-EEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHH
Confidence 4578999999999999999999889999 999999 9999998864 5688899999887444 49999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecc--cCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEP--VLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
|+.+++....+ ++.++|+|+|.++..+. +..... .++.+ -.+.|++.+.+.|...
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~----------gm~~~------------Y~~~~e~~~~~~g~~~ 266 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSK----------GMFQN------------YSQSFESQARERSCRI 266 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSCSEEEEEEECC-----------------CHHHH------------HHHHHHHHHHHHTCCE
T ss_pred HhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCc----------chhhH------------HHHHHHHHHHhcCCce
Confidence 99988776777 89999999999998876 222211 11111 1568899999999955
Q ss_pred EEEEEccceeEEEe
Q 041308 214 LRAFISIIFTLFLS 227 (244)
Q Consensus 214 ~~~~~~~~~~~~~~ 227 (244)
.+. .+++-..+++
T Consensus 267 ~~~-~~~nEl~y~i 279 (281)
T 3lcv_B 267 QRL-EIGNELIYVI 279 (281)
T ss_dssp EEE-EETTEEEEEE
T ss_pred eee-eecCeeEEEe
Confidence 444 4444333443
No 146
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.41 E-value=1e-13 Score=113.63 Aligned_cols=122 Identities=13% Similarity=-0.036 Sum_probs=94.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-C-----CcceEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-I-----HVVDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~-----p~~D~v~ 129 (244)
..+..+|||||||+|..+..++..+|+.+ ++++|. +.+++.++++ .+++++.+|+.+. . ...|+|+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELE-LVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence 35678999999999999999999999999 999999 9999888863 5799999998653 2 1259999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
++.+- + ...+++.+.+.|||||++++........ ...++...+++.
T Consensus 157 s~a~~----~--~~~ll~~~~~~LkpgG~l~~~~g~~~~~----------------------------e~~~~~~~l~~~ 202 (249)
T 3g89_A 157 ARAVA----P--LCVLSELLLPFLEVGGAAVAMKGPRVEE----------------------------ELAPLPPALERL 202 (249)
T ss_dssp EESSC----C--HHHHHHHHGGGEEEEEEEEEEECSCCHH----------------------------HHTTHHHHHHHH
T ss_pred ECCcC----C--HHHHHHHHHHHcCCCeEEEEEeCCCcHH----------------------------HHHHHHHHHHHc
Confidence 87542 2 2478999999999999999866321100 023456777889
Q ss_pred CCCeEEEEEc
Q 041308 210 GFPHLRAFIS 219 (244)
Q Consensus 210 Gf~~~~~~~~ 219 (244)
||+..++..+
T Consensus 203 G~~~~~~~~~ 212 (249)
T 3g89_A 203 GGRLGEVLAL 212 (249)
T ss_dssp TEEEEEEEEE
T ss_pred CCeEEEEEEe
Confidence 9999888765
No 147
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.41 E-value=1.2e-12 Score=105.11 Aligned_cols=118 Identities=14% Similarity=0.054 Sum_probs=96.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc---ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV---VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~---~D~v~~~ 131 (244)
.+++.+|||||||+|.++..+++.+|..+ ++++|+ +.+++.|+++ +++++..+|.++.++. .|+|++.
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~-V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~Ivia 91 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKS-AIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIA 91 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEc
Confidence 34568999999999999999999988888 999999 9999998864 5799999999988653 5988876
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
.+- -+....++.++.+.|+|+|++++.-. ...+.++++|.+.||
T Consensus 92 G~G----g~~i~~Il~~~~~~L~~~~~lVlq~~--------------------------------~~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 92 GMG----GRLIARILEEGLGKLANVERLILQPN--------------------------------NREDDLRIWLQDHGF 135 (225)
T ss_dssp EEC----HHHHHHHHHHTGGGCTTCCEEEEEES--------------------------------SCHHHHHHHHHHTTE
T ss_pred CCC----hHHHHHHHHHHHHHhCCCCEEEEECC--------------------------------CCHHHHHHHHHHCCC
Confidence 553 24457899999999999999887221 025577999999999
Q ss_pred CeEEEE
Q 041308 212 PHLRAF 217 (244)
Q Consensus 212 ~~~~~~ 217 (244)
.+++..
T Consensus 136 ~i~~e~ 141 (225)
T 3kr9_A 136 QIVAES 141 (225)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999865
No 148
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.41 E-value=3.6e-13 Score=107.38 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=84.1
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC-c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH-V 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p-~ 124 (244)
..+++.+. ..+..+|||+|||+|.++..+++.. |..+ ++++|. +.+++.++++ +++++..+|+.+.++ .
T Consensus 67 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 144 (215)
T 2yxe_A 67 GMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGL-VVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPL 144 (215)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGG
T ss_pred HHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCC
Confidence 34566665 6777899999999999999999987 5567 999999 9999888753 579999999866655 2
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++..++|++++ ++.+.|||||++++...
T Consensus 145 ~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 145 APYDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp CCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred CCeeEEEECCchHHHHH--------HHHHHcCCCcEEEEEEC
Confidence 499999999999873 67889999999999754
No 149
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.41 E-value=1.1e-13 Score=113.18 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=79.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CC---cceE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IH---VVDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p---~~D~ 127 (244)
..+..+|||||||+|..+..+++..| ..+ ++++|+ +.+++.++++ ++++++.+|+.+. ++ ..|+
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQ-LLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL 139 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCE-EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence 34568999999999999999999988 678 999999 9999888753 5899999998653 22 3599
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
|++... ......+++++.+.|||||++++.+...
T Consensus 140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 140 IFIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EEECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 987543 2334678999999999999999866544
No 150
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.40 E-value=3.8e-13 Score=103.94 Aligned_cols=120 Identities=15% Similarity=0.100 Sum_probs=93.0
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--c
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--V 125 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~ 125 (244)
.+++.++ ..+..+|||+|||+|.++..+++ +..+ ++++|. +.+++.++++ +++++..+|+.++++. .
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKF-VYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF 101 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSE-EEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCe-EEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence 3444444 56678999999999999999998 6677 999999 9999888764 5899999999776554 5
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
|+|++..+ + ....+++++.+. |||++++.+... .+..++.++
T Consensus 102 D~i~~~~~-~-----~~~~~l~~~~~~--~gG~l~~~~~~~------------------------------~~~~~~~~~ 143 (183)
T 2yxd_A 102 NKAFIGGT-K-----NIEKIIEILDKK--KINHIVANTIVL------------------------------ENAAKIINE 143 (183)
T ss_dssp SEEEECSC-S-----CHHHHHHHHHHT--TCCEEEEEESCH------------------------------HHHHHHHHH
T ss_pred cEEEECCc-c-----cHHHHHHHHhhC--CCCEEEEEeccc------------------------------ccHHHHHHH
Confidence 99999887 2 235788999888 999999976411 013457888
Q ss_pred HHhCCCCeEEE
Q 041308 206 GFSTGFPHLRA 216 (244)
Q Consensus 206 l~~aGf~~~~~ 216 (244)
++++||.+..+
T Consensus 144 l~~~g~~~~~~ 154 (183)
T 2yxd_A 144 FESRGYNVDAV 154 (183)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHcCCeEEEE
Confidence 99999876655
No 151
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.40 E-value=6.5e-13 Score=109.20 Aligned_cols=124 Identities=10% Similarity=-0.019 Sum_probs=94.3
Q ss_pred CC-CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CCc--ceEE
Q 041308 63 FK-GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IHV--VDAI 128 (244)
Q Consensus 63 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p~--~D~v 128 (244)
.+ +..+|||+|||+|.++..++++.+. + ++++|+ +.+++.++++ ++++++.+|+.+. ++. .|+|
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~-v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I 123 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-K-IVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV 123 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-E-EEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-c-EEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence 56 6789999999999999999998765 7 999999 9999888763 4799999999765 223 4999
Q ss_pred EeccccccC------------------CHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhh
Q 041308 129 FMKWVLTTW------------------TDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIY 190 (244)
Q Consensus 129 ~~~~~lh~~------------------~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~ 190 (244)
+++..++.. .......+++++.+.|||||+++++.. ..
T Consensus 124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~--------------------- 179 (259)
T 3lpm_A 124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---PE--------------------- 179 (259)
T ss_dssp EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---TT---------------------
T ss_pred EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---HH---------------------
Confidence 997554332 112345799999999999999999531 11
Q ss_pred ccCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 191 RAKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 191 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
...++.+++++.||....+..+
T Consensus 180 -------~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 180 -------RLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp -------THHHHHHHHHHTTEEEEEEEEE
T ss_pred -------HHHHHHHHHHHCCCceEEEEEe
Confidence 1445677888899998887665
No 152
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.40 E-value=8.6e-13 Score=101.16 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=81.0
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCC---------CCc-
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS---------IHV- 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~---------~p~- 124 (244)
+++.+...++..+|||+|||+|.++..+++.. |+.+ ++++|...+++ ..++++..+|+.+. ++.
T Consensus 13 ~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGR-IIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCE-EEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCe-EEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCC
Confidence 44444324567899999999999999999985 6678 99999933543 27899999999764 343
Q ss_pred -ceEEEeccccccCCHHH---------HHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 -VDAIFMKWVLTTWTDDE---------CKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~---------~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++...+|+..... ...+++++.++|+|||++++...
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 49999998888765431 15889999999999999998765
No 153
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.40 E-value=4.7e-13 Score=108.68 Aligned_cols=99 Identities=10% Similarity=0.161 Sum_probs=74.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC------------CCCCeeEEeCCCCCC----CCc--
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP------------SIPEVTHIGGDMFKS----IHV-- 124 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~------------~~~~i~~~~gd~~~~----~p~-- 124 (244)
.+..+|||||||+|.++..+++.+|+.. ++++|+ +.|++.|+ ...++.++.+|+.+. ++.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~-v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTL-ILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSE-EEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 4557999999999999999999999988 999999 88987653 236899999999874 333
Q ss_pred ceEEEeccccccCCHH--H----HHHHHHHHHHHcCCCCEEEEec
Q 041308 125 VDAIFMKWVLTTWTDD--E----CKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~--~----~~~~l~~~~~~L~pgG~lii~d 163 (244)
.|.|++...-.+.... . ...+++++.++|||||.|++..
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 3888765432221100 0 0368999999999999999864
No 154
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.40 E-value=3.8e-13 Score=111.64 Aligned_cols=126 Identities=19% Similarity=0.185 Sum_probs=97.8
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~ 124 (244)
..++..++ +.+..+|||+|||+|.++..+++. .|..+ ++++|. +.+++.++++ +++++..+|+.+.++.
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGK-VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCE-EEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 34666666 777889999999999999999998 67888 999999 9999888753 5799999999877654
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
.|+|++. .++. ..+++++.++|+|||++++.+.... ..+++
T Consensus 180 ~~~D~V~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~------------------------------~~~~~ 222 (277)
T 1o54_A 180 KDVDALFLD-----VPDP--WNYIDKCWEALKGGGRFATVCPTTN------------------------------QVQET 222 (277)
T ss_dssp CSEEEEEEC-----CSCG--GGTHHHHHHHEEEEEEEEEEESSHH------------------------------HHHHH
T ss_pred CccCEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeCCHH------------------------------HHHHH
Confidence 5999873 3333 3789999999999999999764210 02345
Q ss_pred HHHHHhCCCCeEEEEE
Q 041308 203 KQLGFSTGFPHLRAFI 218 (244)
Q Consensus 203 ~~ll~~aGf~~~~~~~ 218 (244)
.+.++++||..+++..
T Consensus 223 ~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 223 LKKLQELPFIRIEVWE 238 (277)
T ss_dssp HHHHHHSSEEEEEEEC
T ss_pred HHHHHHCCCceeEEEE
Confidence 6667788888777644
No 155
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.39 E-value=2.6e-12 Score=101.20 Aligned_cols=103 Identities=21% Similarity=0.181 Sum_probs=77.5
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcC--CCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCC-----------
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC--FICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSI----------- 122 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~----------- 122 (244)
+.+.+..+++..+|||+|||+|.++..++++.| ..+ ++++|+..+ ...++++++.+|+.+..
T Consensus 13 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~-v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 13 LDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNK-IIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp HHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEE-EEEEESSCC----CCCTTCEEEECCTTTTSSCCC-------
T ss_pred HHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCce-EEEEeCCcc----CCCCCceEEEccccchhhhhhccccccc
Confidence 444444346678999999999999999999987 578 999999433 12368999999997642
Q ss_pred ---------------Cc--ceEEEeccccccCC----HHH-----HHHHHHHHHHHcCCCCEEEEec
Q 041308 123 ---------------HV--VDAIFMKWVLTTWT----DDE-----CKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 123 ---------------p~--~D~v~~~~~lh~~~----~~~-----~~~~l~~~~~~L~pgG~lii~d 163 (244)
+. .|+|++...+|+.. +.. ...+++++.++|||||++++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 32 49999988777532 211 1248999999999999999844
No 156
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.39 E-value=4.1e-13 Score=107.70 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=79.4
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC--------cc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH--------VV 125 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p--------~~ 125 (244)
..+..+|||||||+|..+..+++..| +.+ ++++|+ +.+++.++++ .+++++.+|+.+.++ ..
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f 134 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGR-VVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPF 134 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence 34568999999999999999999988 678 999999 9999888753 469999999866422 25
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
|+|++.... .....+++++.+.|+|||.+++.+....
T Consensus 135 D~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 135 DFIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp SEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred CEEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 999876542 2345889999999999998888666543
No 157
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.38 E-value=1.9e-12 Score=104.13 Aligned_cols=130 Identities=15% Similarity=0.042 Sum_probs=101.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc---ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV---VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~---~D~v~~~ 131 (244)
.+++.+|+|||||+|.++..+++.+|..+ ++++|+ +.+++.|+++ +++++..+|.++.++. .|+|++.
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~-V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivia 97 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDF-AIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITIC 97 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEe
Confidence 34668999999999999999999988778 999999 9999999864 5799999999987543 5998876
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
.+.- +....++.+..+.|+++|+|++.-. ...+++++|+.+.||
T Consensus 98 GmGg----~lI~~IL~~~~~~l~~~~~lIlqp~--------------------------------~~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 98 GMGG----RLIADILNNDIDKLQHVKTLVLQPN--------------------------------NREDDLRKWLAANDF 141 (230)
T ss_dssp EECH----HHHHHHHHHTGGGGTTCCEEEEEES--------------------------------SCHHHHHHHHHHTTE
T ss_pred CCch----HHHHHHHHHHHHHhCcCCEEEEECC--------------------------------CChHHHHHHHHHCCC
Confidence 6542 4567889999999999999987321 116678999999999
Q ss_pred CeEEEEEc---cceeEEEeec
Q 041308 212 PHLRAFIS---IIFTLFLSSK 229 (244)
Q Consensus 212 ~~~~~~~~---~~~~~~~~~~ 229 (244)
.+.+..-+ ...+-++.++
T Consensus 142 ~i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 142 EIVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 99987543 2334444443
No 158
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.38 E-value=2.9e-13 Score=116.17 Aligned_cols=106 Identities=14% Similarity=0.032 Sum_probs=85.0
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~- 124 (244)
+.+++.+. ..+..+|||||||+|.++..+++. +..+ ++++|...+++.+++. ++++++.+|+.+. ++.
T Consensus 40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~-V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARK-IYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCE-EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 34555554 456789999999999999999876 4457 9999994477766642 6899999999774 554
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|+|++..+++|+..+.....+.++++.|||||++++.
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 59999999998888776678889999999999999854
No 159
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.38 E-value=8.2e-13 Score=106.41 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=82.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCCCCc---
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKSIHV--- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~~p~--- 124 (244)
...+++.+. ..+..+|||+|||+|.++..+++.. .+ ++++|. +.+++.++++ .+++++.+|+.+.++.
T Consensus 59 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~-v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~ 134 (231)
T 1vbf_A 59 GIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DK-VVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP 134 (231)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CE-EEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCC
Confidence 345666665 6777899999999999999999886 56 999999 9999888754 2799999999775442
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++..++||+.+ ++.+.|+|||++++...
T Consensus 135 fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 135 YDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIG 166 (231)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred ccEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEc
Confidence 499999999999874 57889999999999864
No 160
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.37 E-value=1.5e-12 Score=105.71 Aligned_cols=94 Identities=18% Similarity=0.078 Sum_probs=76.9
Q ss_pred CcceEEEEcCCccHHHHHHHHH----cCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC--CC---c--ceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQK----HCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS--IH---V--VDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~--~p---~--~D~v~~~ 131 (244)
+..+|||||||+|..+..+++. .|..+ ++++|+ +.+++.|+.. ++++++.+|..+. ++ . .|+|++.
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~-V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d 159 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQ-VIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID 159 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCE-EEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCE-EEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEEC
Confidence 3579999999999999999987 67788 999999 9998888743 7899999999873 22 2 4998876
Q ss_pred cccccCCHHHHHHHHHHHHH-HcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYK-ALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~-~L~pgG~lii~d~ 164 (244)
.. |. +...+|+++.+ .|||||++++.+.
T Consensus 160 ~~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 160 NA-HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SS-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred Cc-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 54 42 23578999997 9999999999765
No 161
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.37 E-value=1.1e-12 Score=102.51 Aligned_cols=100 Identities=10% Similarity=-0.046 Sum_probs=80.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CC-c-ceEEEec
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IH-V-VDAIFMK 131 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p-~-~D~v~~~ 131 (244)
.+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ ++++++.+|+.+. ++ . .|+|++.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~ 120 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAAS-VLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLAD 120 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSE-EEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEEC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCe-EEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEEC
Confidence 34689999999999999988875 4456 999999 9999988864 5899999998664 22 2 5999998
Q ss_pred cccccCCHHHHHHHHHHHHH--HcCCCCEEEEecccC
Q 041308 132 WVLTTWTDDECKLIMENYYK--ALLAGRKLIACEPVL 166 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~--~L~pgG~lii~d~~~ 166 (244)
..+|+. .++..++++++.+ +|+|||++++.....
T Consensus 121 ~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 121 PPYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 887654 3456789999999 999999999976543
No 162
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.37 E-value=1e-12 Score=111.21 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=84.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH- 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p- 123 (244)
...+++.++ .+++.+|||+|||+|.++..+++..+ ..+ ++++|+ +.+++.++++ +++++..+|+.+..+
T Consensus 64 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~ 141 (317)
T 1dl5_A 64 MALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (317)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc
Confidence 445666666 67789999999999999999999887 477 999999 9999888753 569999999977543
Q ss_pred c--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 V--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 ~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
. .|+|++..++||+. +++.+.|||||++++...
T Consensus 142 ~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred CCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence 2 49999999999987 457789999999999754
No 163
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.37 E-value=7.9e-13 Score=107.07 Aligned_cols=101 Identities=22% Similarity=0.153 Sum_probs=83.5
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~- 124 (244)
...+++.++ ..+..+|||+|||+|.++..+++..+ .+ ++++|. +.+++.++++ .++++..+|...+++.
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TD-VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SC-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence 444666665 67788999999999999999999987 67 999999 9999888753 5799999998555554
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++...++++.+ ++.+.|+|||++++.-.
T Consensus 157 ~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred CCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 499999999998874 57889999999998654
No 164
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.36 E-value=7.6e-13 Score=107.90 Aligned_cols=99 Identities=13% Similarity=0.041 Sum_probs=79.8
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC---------Ccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI---------HVV 125 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~---------p~~ 125 (244)
.+..+|||||||+|..+..+++..| +.+ ++++|+ +.+++.|+++ ++++++.+|+.+.+ ...
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQ-VITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCE-EEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 3568999999999999999999886 678 999999 8888888753 58999999987642 225
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
|+|++... ......+++++.+.|||||.+++-+.....
T Consensus 138 D~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 138 DFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred eEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 99987654 233457899999999999999997766543
No 165
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.35 E-value=3.7e-13 Score=108.04 Aligned_cols=99 Identities=16% Similarity=0.250 Sum_probs=79.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---CC------cc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---IH------VV 125 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~p------~~ 125 (244)
.+..+|||+|||+|..+..+++..+ +.+ ++++|+ +.+++.++++ ++++++.+|+.+. ++ ..
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGAR-LLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 4568999999999999999999765 677 999999 9999988863 4799999997442 33 25
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
|+|++....+++.+. ..+++.+ +.|||||++++.+...
T Consensus 136 D~V~~d~~~~~~~~~--~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 136 DMVFLDHWKDRYLPD--TLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp SEEEECSCGGGHHHH--HHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEEEcCCcccchHH--HHHHHhc-cccCCCeEEEEeCCCC
Confidence 999998877775433 4677777 9999999999866653
No 166
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.35 E-value=1.2e-12 Score=107.83 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=78.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCC--------CC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKS--------IH 123 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~--------~p 123 (244)
..+..+|||+|||+|.++..++++.|..+ ++++|+ +.+++.++++ ++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~-v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~ 112 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAE-VTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP 112 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEE-EEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence 55678999999999999999999999888 999999 9988877642 2599999999875 23
Q ss_pred c--ceEEEecccccc----------------CCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 124 V--VDAIFMKWVLTT----------------WTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 124 ~--~D~v~~~~~lh~----------------~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
. .|+|+++..++. ........+++++.+.|||||+++++.
T Consensus 113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 499999733322 122224678999999999999999853
No 167
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.35 E-value=6.1e-13 Score=114.15 Aligned_cols=97 Identities=20% Similarity=0.170 Sum_probs=76.5
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc--ceEEEecc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV--VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~--~D~v~~~~ 132 (244)
..+..+|||||||+|.++..+++. +..+ ++++|..++++.|++. ++++++.+|+.+. +|. .|+|++..
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~-v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~ 141 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARK-VIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW 141 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSE-EEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCE-EEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcc
Confidence 345689999999999999999987 4557 9999995588877752 4599999999875 663 49999877
Q ss_pred ccccCC-HHHHHHHHHHHHHHcCCCCEEEE
Q 041308 133 VLTTWT-DDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 133 ~lh~~~-~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+.+++. .+....+++++.++|||||+++.
T Consensus 142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 142 MGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 654432 23345789999999999999874
No 168
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.34 E-value=7.4e-13 Score=108.06 Aligned_cols=93 Identities=12% Similarity=0.195 Sum_probs=73.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC--------------CCCeeEEeCCCCCCCC----c
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS--------------IPEVTHIGGDMFKSIH----V 124 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~--------------~~~i~~~~gd~~~~~p----~ 124 (244)
++..+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.+++ .+++.++.+|+++.++ .
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDL-ILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSE-EEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCC-EEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 4568999999999999999999999888 999999 888876642 2689999999987543 2
Q ss_pred --ceEEEeccccccCCHHHH-----------HHHHHHHHHHcCCCCEEEEe
Q 041308 125 --VDAIFMKWVLTTWTDDEC-----------KLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~-----------~~~l~~~~~~L~pgG~lii~ 162 (244)
.|.|++. ++++.. ..+++++.++|+|||+|++.
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 2666633 232211 37899999999999999985
No 169
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.34 E-value=8.6e-13 Score=104.45 Aligned_cols=91 Identities=10% Similarity=-0.034 Sum_probs=76.0
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc--ceEEEecccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV--VDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~--~D~v~~~~~lh~ 136 (244)
..+|||+|||+|.++..+++..|..+ ++++|. +.+++.++++ .++++..+|+.+..+. .|+|++..+ ++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~~ 143 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAH-FTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-AS 143 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-SS
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-CC
Confidence 57999999999999999999999888 999999 9998888752 4599999999776433 499997543 22
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
...+++++.+.|+|||++++..
T Consensus 144 -----~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 144 -----LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -----HHHHHHHHTTSEEEEEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCcEEEEEe
Confidence 3488999999999999999863
No 170
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.34 E-value=1.9e-12 Score=104.05 Aligned_cols=144 Identities=12% Similarity=0.061 Sum_probs=98.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCC---C-Cc-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKS---I-HV-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~---~-p~-~D~v~ 129 (244)
+..+|||||||+|..+..+++..| +.+ ++++|. +.+++.|+++ ++++++.+|+.+. + +. .|+|+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~ 134 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTT-LTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVF 134 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSE-EEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence 345999999999999999999875 677 999999 9999888753 4799999998654 3 22 49998
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFST 209 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~a 209 (244)
+....+ +...+++++.+.|||||.+++-+.........+. ..+.. .....++.+.+.+.
T Consensus 135 ~d~~~~-----~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~------~~~~~----------~~~~~~~~~~l~~~ 193 (221)
T 3dr5_A 135 GQVSPM-----DLKALVDAAWPLLRRGGALVLADALLDGTIADQT------RKDRD----------TQAARDADEYIRSI 193 (221)
T ss_dssp ECCCTT-----THHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSS------CCCHH----------HHHHHHHHHHHTTC
T ss_pred EcCcHH-----HHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCC------CCChH----------HHHHHHHHHHHhhC
Confidence 765432 2356899999999999999986655432210000 00000 00134566666543
Q ss_pred CCCeEEEEEccceeEEEeecCch
Q 041308 210 GFPHLRAFISIIFTLFLSSKSNF 232 (244)
Q Consensus 210 Gf~~~~~~~~~~~~~~~~~~~~~ 232 (244)
..++..-++.+.++.++++..
T Consensus 194 --~~~~~~~lp~gdGl~~~~~~~ 214 (221)
T 3dr5_A 194 --EGAHVARLPLGAGLTVVTKAL 214 (221)
T ss_dssp --TTEEEEEESSTTCEEEEEECC
T ss_pred --CCeeEEEeeccchHHHHHHHH
Confidence 455566667677777776654
No 171
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.34 E-value=5.5e-12 Score=102.29 Aligned_cols=130 Identities=12% Similarity=0.074 Sum_probs=101.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc---ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV---VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~---~D~v~~~ 131 (244)
.+++.+|||||||+|.++..+++..|..+ ++++|+ +.+++.|+++ +++++..+|.++.++. .|+|++.
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~-V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivia 97 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASF-AIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIA 97 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEe
Confidence 35668999999999999999999988778 999999 9999999864 5799999999987542 5998876
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
.+. -+....++.+..+.|+++++|++.-. ...+.+++++.+.||
T Consensus 98 gmG----g~lI~~IL~~~~~~L~~~~~lIlq~~--------------------------------~~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 98 GMG----GTLIRTILEEGAAKLAGVTKLILQPN--------------------------------IAAWQLREWSEQNNW 141 (244)
T ss_dssp EEC----HHHHHHHHHHTGGGGTTCCEEEEEES--------------------------------SCHHHHHHHHHHHTE
T ss_pred CCc----hHHHHHHHHHHHHHhCCCCEEEEEcC--------------------------------CChHHHHHHHHHCCC
Confidence 543 24567889999999999999998321 025678999999999
Q ss_pred CeEEEEE---ccceeEEEeec
Q 041308 212 PHLRAFI---SIIFTLFLSSK 229 (244)
Q Consensus 212 ~~~~~~~---~~~~~~~~~~~ 229 (244)
.+.+..- -...+-++.+.
T Consensus 142 ~i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 142 LITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 9877543 33344444443
No 172
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.33 E-value=8.8e-13 Score=106.71 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=80.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC----c-ceEEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH----V-VDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p----~-~D~v~ 129 (244)
..+..+|||+|||+|..+..+++..|..+ ++++|+ +.+++.++++ ++++++.+|+.+.++ . .|+|+
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~ 147 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIH-VTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIF 147 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCE-EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEE
Confidence 34568999999999999999999888888 999999 9999988763 489999999987655 2 49999
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
+.... .....+++++.+.|||||++++-+...
T Consensus 148 ~~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 148 IDAAK-----AQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp EETTS-----SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred EcCcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 66432 224578999999999999998855543
No 173
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.32 E-value=2.7e-12 Score=111.27 Aligned_cols=97 Identities=10% Similarity=0.026 Sum_probs=81.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCC-C--cceEEEeccccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSI-H--VVDAIFMKWVLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~-p--~~D~v~~~~~lh 135 (244)
+..+|||+|||+|.++..+++. +.+ ++++|. +.+++.++++ .+++++.+|+.+.. + ..|+|++...+|
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~-V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAE-VVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCE-EEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchh
Confidence 4579999999999999999987 357 999999 9999988864 35899999998863 3 259999999998
Q ss_pred c---CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 136 T---WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~---~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ...+....+++++.+.|||||+++++..
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 7 4455667899999999999999999753
No 174
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.32 E-value=1.5e-12 Score=105.25 Aligned_cols=99 Identities=11% Similarity=0.144 Sum_probs=81.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC-----Cc-ceEE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI-----HV-VDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~-----p~-~D~v 128 (244)
..+..+|||+|||+|..+..+++..|..+ ++++|. +.+++.++++ .++++..+|+.+.+ +. .|+|
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 130 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEAT-IVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVL 130 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEE
Confidence 34568999999999999999999998888 999999 9999888753 47999999997742 22 4999
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
++....+ ....+++++.+.|+|||++++.+....
T Consensus 131 ~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~~ 164 (233)
T 2gpy_A 131 FIDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLFR 164 (233)
T ss_dssp EEEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC-
T ss_pred EECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCcC
Confidence 9877654 235789999999999999999766543
No 175
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.31 E-value=1.1e-12 Score=101.38 Aligned_cols=107 Identities=9% Similarity=0.062 Sum_probs=79.9
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC---C
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI---H 123 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~---p 123 (244)
.+++.+....+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ ++++++.+|+.+.+ +
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 98 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSA-AVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT 98 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCE-EEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc
Confidence 34443322345689999999999999999987 5567 999999 9999888753 47999999987632 2
Q ss_pred c-ceEEEeccccccCCHHHHHHHHHHHH--HHcCCCCEEEEecccC
Q 041308 124 V-VDAIFMKWVLTTWTDDECKLIMENYY--KALLAGRKLIACEPVL 166 (244)
Q Consensus 124 ~-~D~v~~~~~lh~~~~~~~~~~l~~~~--~~L~pgG~lii~d~~~ 166 (244)
. .|+|++...+|. .....+++.+. ++|+|||++++.....
T Consensus 99 ~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 99 GRFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 2 599999877643 23346677776 9999999999876543
No 176
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.31 E-value=2e-12 Score=108.33 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=73.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-----------CCCeeEEeCCCCCCCC---c-ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-----------IPEVTHIGGDMFKSIH---V-VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-----------~~~i~~~~gd~~~~~p---~-~D~ 127 (244)
.++.+|||||||+|..++.+++..+..+ ++++|+ +.|++.|++ .+|++++.+|..+.++ . .|+
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDv 160 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVES-ITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCE-EEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccE
Confidence 3468999999999999999998766667 999999 999988865 2589999999987642 2 499
Q ss_pred EEeccccccCCHHHH--HHHHHHHHHHcCCCCEEEEec
Q 041308 128 IFMKWVLTTWTDDEC--KLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 128 v~~~~~lh~~~~~~~--~~~l~~~~~~L~pgG~lii~d 163 (244)
|++...-+.-+.... ..++++++++|+|||.+++..
T Consensus 161 Ii~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EEECC----------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEec
Confidence 998655433222211 578999999999999999854
No 177
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.31 E-value=3.5e-12 Score=109.03 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=78.8
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc-
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~- 124 (244)
+.+.+... ..+..+|||||||+|.++..+++. +..+ ++++|...+++.++++ ++++++.+|+.+. ++.
T Consensus 54 ~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~-v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 130 (340)
T 2fyt_A 54 DFIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKK-VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVE 130 (340)
T ss_dssp HHHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCS
T ss_pred HHHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCE-EEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCC
Confidence 34555444 556789999999999999999987 3446 9999994488887753 6899999999874 653
Q ss_pred -ceEEEeccc---cccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 125 -VDAIFMKWV---LTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 125 -~D~v~~~~~---lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
.|+|++..+ +++.. ....+++++.++|||||+++
T Consensus 131 ~~D~Ivs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 131 KVDVIISEWMGYFLLFES--MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CEEEEEECCCBTTBTTTC--HHHHHHHHHHHHEEEEEEEE
T ss_pred cEEEEEEcCchhhccCHH--HHHHHHHHHHhhcCCCcEEE
Confidence 599998763 44433 34578999999999999997
No 178
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.30 E-value=8.4e-13 Score=105.93 Aligned_cols=98 Identities=15% Similarity=0.066 Sum_probs=78.9
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC---------Ccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI---------HVV 125 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~---------p~~ 125 (244)
.+..+|||+|||+|..+..+++..| ..+ ++++|. +.+++.++++ .+++++.+|..+.+ ...
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGT-LITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 3568999999999999999999887 677 999999 9999888753 56999999986542 235
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
|+|++... ......+++++.+.|||||++++.+....
T Consensus 142 D~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 142 DLIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 99986543 23346789999999999999998776543
No 179
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.30 E-value=1.8e-12 Score=112.34 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=83.4
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc-c
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV-V 125 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~ 125 (244)
.+.+... ..+..+|||||||+|.++..+++... .+ ++++|...|++.+++. .+++++.+|+.+. ++. .
T Consensus 54 ~i~~~~~-~~~~~~VLDlGcGtG~ls~~la~~g~-~~-V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 130 (376)
T 3r0q_C 54 AVFQNKH-HFEGKTVLDVGTGSGILAIWSAQAGA-RK-VYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKV 130 (376)
T ss_dssp HHHTTTT-TTTTCEEEEESCTTTHHHHHHHHTTC-SE-EEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCE
T ss_pred HHHhccc-cCCCCEEEEeccCcCHHHHHHHhcCC-CE-EEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcc
Confidence 3444444 56678999999999999999998743 36 9999997777777652 5699999999765 554 5
Q ss_pred eEEEeccccccCCH-HHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 126 DAIFMKWVLTTWTD-DECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 126 D~v~~~~~lh~~~~-~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
|+|++..+.|++.. .....+++++.+.|||||.+++.+..
T Consensus 131 D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 131 DVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp EEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred eEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 99999776666543 23567899999999999999876543
No 180
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.30 E-value=2e-12 Score=111.45 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=74.7
Q ss_pred CcceEEEEcCC------ccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CC-------c-ceE
Q 041308 65 GVKRLVDVGGS------AGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IH-------V-VDA 127 (244)
Q Consensus 65 ~~~~vLDvG~G------~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p-------~-~D~ 127 (244)
+..+||||||| +|..+..++++ +|+.+ ++++|+ +.|. ...++++++.+|+.+. ++ . .|+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~-V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQ-IYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCE-EEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCE-EEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 45899999999 77777777765 58888 999999 7774 2347999999999774 33 2 499
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
|++. ..|++. +..+.|++++++|||||++++.|..
T Consensus 292 Visd-gsH~~~--d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDD-GSHINA--HVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp EEEC-SCCCHH--HHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred EEEC-Ccccch--hHHHHHHHHHHhcCCCeEEEEEecc
Confidence 9876 456543 3568999999999999999998875
No 181
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.30 E-value=8.6e-12 Score=97.72 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=75.3
Q ss_pred hccCCCCCCcceEEEEcCCccHHHHHHHHHcCC---------CCeEEEeechHHHHhCCCCCCeeEE-eCCCCCC-----
Q 041308 57 LDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF---------ICEGINFDLPEVVAKAPSIPEVTHI-GGDMFKS----- 121 (244)
Q Consensus 57 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~---------~~~~~~~D~~~~i~~a~~~~~i~~~-~gd~~~~----- 121 (244)
.+.+..+++..+|||+|||+|.++..+++..+. .+ ++++|+..+ ...+++++. .+|+.+.
T Consensus 14 ~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~-v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 14 NERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGF-VLGVDLLHI----FPLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp HHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCE-EEEECSSCC----CCCTTCEEECSCCTTSHHHHHH
T ss_pred HHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCce-EEEEechhc----ccCCCCeEEEeccCCCHHHHHH
Confidence 333433566789999999999999999999764 67 999999432 223678999 9998653
Q ss_pred ----CCc--ceEEEecccccc----CCHHH-----HHHHHHHHHHHcCCCCEEEEecc
Q 041308 122 ----IHV--VDAIFMKWVLTT----WTDDE-----CKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 122 ----~p~--~D~v~~~~~lh~----~~~~~-----~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
++. .|+|++...+|. ..+.. ...+++++.++|||||++++...
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 222 499998654432 22221 14789999999999999998765
No 182
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.30 E-value=1.8e-11 Score=105.97 Aligned_cols=96 Identities=9% Similarity=-0.075 Sum_probs=79.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-----ceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV-----VDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~-----~D~v~~~~ 132 (244)
++.+|||+| |+|.++..+++..|..+ ++++|+ +.+++.++++ .+++++.+|+.+.+|. .|+|++..
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~-v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKR-IAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSE-EEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 458999999 99999999999888778 999999 9999998864 3899999999885542 49999987
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.++.. ....+++++.++|||||++++.+..
T Consensus 250 p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 250 PETLE---AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp CSSHH---HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CCchH---HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 76643 2468999999999999976555543
No 183
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.29 E-value=3.1e-12 Score=106.71 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=75.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC-cc---eEEEec-
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH-VV---DAIFMK- 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p-~~---D~v~~~- 131 (244)
+..+|||+|||+|.++..+++. |..+ ++++|+ +.+++.|+++ .+++++.+|+++.++ .. |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~-v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnP 200 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAI-VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP 200 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCE-EEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcC
Confidence 4579999999999999999999 8888 999999 9999988863 369999999988654 36 999986
Q ss_pred -----------cccccCCHH------HHHHHHHHHH-HHcCCCCEEEE
Q 041308 132 -----------WVLTTWTDD------ECKLIMENYY-KALLAGRKLIA 161 (244)
Q Consensus 132 -----------~~lh~~~~~------~~~~~l~~~~-~~L~pgG~lii 161 (244)
.+. |-+.. +...+++++. +.|+|||++++
T Consensus 201 Pyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 201 PYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 222 22211 1126899999 99999999997
No 184
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.29 E-value=1.5e-12 Score=109.64 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=77.9
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc--ceEEEecccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV--VDAIFMKWVL 134 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~--~D~v~~~~~l 134 (244)
.+|||||||+|.+++.+++.+|+.+ ++++|+ +.|++.++++ +|++++.+|..+. .+. .|+|++....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~-v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSR-NTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCE-EEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcE-EEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 4999999999999999999999998 999999 9999998753 6899999998653 332 5999986544
Q ss_pred ccCCHHH--HHHHHHHHHHHcCCCCEEEEecc
Q 041308 135 TTWTDDE--CKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 135 h~~~~~~--~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+...... ...++++++++|+|||.+++.-.
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 4322111 14789999999999999987553
No 185
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.29 E-value=3e-12 Score=106.09 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=82.5
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC---------CCeeEEeCCCCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI---------PEVTHIGGDMFKS 121 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~---------~~i~~~~gd~~~~ 121 (244)
...++..++ ..+..+|||+|||+|.++..+++. .|..+ ++++|. +.+++.++++ +++++..+|+.+.
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQ-VISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 165 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence 345666676 778889999999999999999986 46778 999999 9998887642 4799999999765
Q ss_pred -CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 122 -IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 122 -~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
++. .|+|++. .++. ..+++++.++|+|||++++...
T Consensus 166 ~~~~~~~D~v~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 166 ELPDGSVDRAVLD-----MLAP--WEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCCTTCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCceeEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeC
Confidence 443 4999872 3332 2789999999999999999765
No 186
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.29 E-value=4.5e-12 Score=99.63 Aligned_cols=103 Identities=22% Similarity=0.268 Sum_probs=75.1
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCC------------
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSI------------ 122 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~------------ 122 (244)
++.+.+..+++..+|||+|||+|.++..++++ ..+ ++++|+.++ ...++++++.+|+.+..
T Consensus 15 ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~-V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 15 FLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARK-IISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp HHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSE-EEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCc-EEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhcc
Confidence 45555554567899999999999999999987 567 999999332 23478999999997751
Q ss_pred --CcceEEEeccccccC----CH-----HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 123 --HVVDAIFMKWVLTTW----TD-----DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 123 --p~~D~v~~~~~lh~~----~~-----~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
...|+|++....... .+ +....+++.+.++|||||.|++...
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 235999985322111 11 1235789999999999999997554
No 187
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=99.29 E-value=8.1e-12 Score=100.48 Aligned_cols=140 Identities=10% Similarity=-0.018 Sum_probs=101.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC-CCc-ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS-IHV-VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~-~p~-~D~v~~~~~lh 135 (244)
.++.+|||||||+|-++..+. |..+ ++++|+ +.+++.+++. .+..+...|.... .|. +|++++..++|
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~-y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIAS-VWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSE-EEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCe-EEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 457899999999999999887 7788 999999 9999999864 6788899999876 444 49999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEE
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
|+.+.+....+ ++.+.|+|+|.++..+.-.=.. ..+ .++ ..-.+.|++.+ .+.+.+++
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~~~vvVsfPtksl~G-r~~-------gm~------------~~Y~~~~e~~~-~~~~~~~~ 237 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNTPRMAVSFPTRSLGG-RGK-------GME------------ANYAAWFEGGL-PAEFEIED 237 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBCSEEEEEEECC-------------------------------CHHHHHHHHS-CTTEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcCCCEEEEcChHHhcC-CCc-------chh------------hHHHHHHHHHh-hccchhhh
Confidence 99888766666 8999999998888877311111 001 011 01145667776 45566777
Q ss_pred EEEccceeEEEeec
Q 041308 216 AFISIIFTLFLSSK 229 (244)
Q Consensus 216 ~~~~~~~~~~~~~~ 229 (244)
-..++.-..+++.+
T Consensus 238 ~~~~~nEl~~~i~~ 251 (253)
T 3frh_A 238 KKTIGTELIYLIKK 251 (253)
T ss_dssp EEEETTEEEEEEEE
T ss_pred heecCceEEEEEec
Confidence 66666666666554
No 188
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.29 E-value=4e-12 Score=104.74 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=77.1
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC-CCc--ceEEEeccccccCC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS-IHV--VDAIFMKWVLTTWT 138 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~-~p~--~D~v~~~~~lh~~~ 138 (244)
.+..+|||+|||+|.++..+++..|..+ ++++|+ +.+++.+++. +++.+..+|+.+. ++. .|+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~---- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEIT-TFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP---- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSE-EEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh----
Confidence 4568999999999999999999887778 999999 9999988764 6889999998653 443 4999986553
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 139 DDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
..++++.++|||||++++....
T Consensus 159 -----~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 159 -----CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp -----CCHHHHHHHEEEEEEEEEEEEC
T ss_pred -----hhHHHHHHhcCCCcEEEEEEcC
Confidence 2479999999999999998764
No 189
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.29 E-value=1e-12 Score=102.17 Aligned_cols=98 Identities=7% Similarity=-0.023 Sum_probs=75.9
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC------Cc-ceE
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI------HV-VDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~------p~-~D~ 127 (244)
..+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ ++++++.+|+.+.. +. .|+
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~ 119 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVSR-GMDK-SICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL 119 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCE
Confidence 345689999999999999998874 4557 999999 9999988863 47999999987642 22 499
Q ss_pred EEeccccccCCHHHHHHHHHHH--HHHcCCCCEEEEeccc
Q 041308 128 IFMKWVLTTWTDDECKLIMENY--YKALLAGRKLIACEPV 165 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~--~~~L~pgG~lii~d~~ 165 (244)
|++...+|....+ ..++.+ .++|+|||.+++....
T Consensus 120 i~~~~~~~~~~~~---~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 120 VLLDPPYAKQEIV---SQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp EEECCCGGGCCHH---HHHHHHHHTTCEEEEEEEEEEEET
T ss_pred EEECCCCCchhHH---HHHHHHHHhcccCCCCEEEEEeCC
Confidence 9998776643333 445555 8889999999987654
No 190
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.27 E-value=4.5e-12 Score=102.03 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=77.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC------CCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCCCCc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC------FICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p------~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~~p~ 124 (244)
.++..+|||+|||+|.++..+++..+ ..+ ++++|. +.+++.++++ .+++++.+|..+.++.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTR-IVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 160 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCE-EEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCE-EEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc
Confidence 55678999999999999999998654 257 999999 9999888752 4799999999876554
Q ss_pred ---ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 ---VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 ---~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++...+|++. +++.+.|||||++++.-.
T Consensus 161 ~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 161 NAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp GCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 49999999998865 567889999999998643
No 191
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.27 E-value=1.2e-12 Score=103.65 Aligned_cols=96 Identities=9% Similarity=0.016 Sum_probs=75.4
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCC-----Cc-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSI-----HV-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~-----p~-~D~v~ 129 (244)
+..+|||+|||+|.++..++++.. .+ ++++|+ +.+++.++++ ++++++.+|+.+.. .. .|+|+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 130 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KK-VTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 130 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SE-EEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CE-EEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEE
Confidence 357999999999999999887653 46 999999 9999988753 48999999986532 24 69999
Q ss_pred eccccccCCHHHHHHHHHHH--HHHcCCCCEEEEeccc
Q 041308 130 MKWVLTTWTDDECKLIMENY--YKALLAGRKLIACEPV 165 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~--~~~L~pgG~lii~d~~ 165 (244)
+...+| ..+ ...+++.+ .++|+|||.+++....
T Consensus 131 ~~~~~~-~~~--~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 131 LDPPFH-FNL--AEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp ECCCSS-SCH--HHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred ECCCCC-Ccc--HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 987765 333 45778888 5679999999986653
No 192
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.26 E-value=1.3e-11 Score=101.85 Aligned_cols=97 Identities=12% Similarity=0.028 Sum_probs=71.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC--C------CeeEE--eCCCCCCCCc-ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI--P------EVTHI--GGDMFKSIHV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~--~------~i~~~--~gd~~~~~p~-~D~v~~~ 131 (244)
+++..+|||+|||+|.++..+++. .+ ++++|+..|+..+++. . ++.++ .+|+.+.-+. .|+|++.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~-V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd 147 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PH-VMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCD 147 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TT-EEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---Cc-EEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEe
Confidence 567789999999999999999877 56 9999993364444322 2 68999 8998663222 5999987
Q ss_pred cccccCCHH----H-HHHHHHHHHHHcCCCC--EEEEecc
Q 041308 132 WVLTTWTDD----E-CKLIMENYYKALLAGR--KLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~----~-~~~~l~~~~~~L~pgG--~lii~d~ 164 (244)
.. ++.... . ...+|+.+.++||||| .+++...
T Consensus 148 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 148 VG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred Cc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 66 443221 1 1247899999999999 9988554
No 193
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.26 E-value=6.8e-12 Score=106.14 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=82.2
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC--CC-c
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS--IH-V 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~--~p-~ 124 (244)
+...++ ..++.+|||+|||+|..+..+++..+ ..+ ++++|+ +.+++.++++ .+++++.+|+.+. .+ .
T Consensus 110 ~~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~-v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 187 (315)
T 1ixk_A 110 PPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGV-IYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE 187 (315)
T ss_dssp HHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCC
T ss_pred HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccccccc
Confidence 344445 66778999999999999999999875 467 999999 9999888753 5799999998664 22 2
Q ss_pred ceEEEec------cccccCC-------HHH-------HHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 125 VDAIFMK------WVLTTWT-------DDE-------CKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 125 ~D~v~~~------~~lh~~~-------~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
.|+|++. .++++.+ .++ ...+|+++.+.|||||++++..+...
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~ 250 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 250 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 5999973 2233322 221 15899999999999999999776543
No 194
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.25 E-value=1.7e-12 Score=103.25 Aligned_cols=97 Identities=18% Similarity=0.114 Sum_probs=77.6
Q ss_pred CcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCC---cceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIH---VVDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p---~~D~v~~~~ 132 (244)
+..+|||+|||+|..+..+++..| +.+ ++++|+ +.+++.++++ ++++++.+|..+.++ ..|+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSR-VVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 468999999999999999999887 677 999999 9999988853 479999999865322 269998763
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
.. .....+++++.+.|||||++++.+....
T Consensus 135 ~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 135 DV-----FNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp TT-----SCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred Ch-----hhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 22 2245789999999999999998665443
No 195
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.25 E-value=2.4e-12 Score=98.49 Aligned_cols=94 Identities=12% Similarity=0.002 Sum_probs=73.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCC-------cceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIH-------VVDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p-------~~D~v~~~ 131 (244)
+..+|||+|||+|.++..+++..+. ++++|. +.+++.++++ .++++..+|+.+.++ ..|+|++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 4689999999999999999988654 899999 9999988864 279999999876422 35999998
Q ss_pred cccccCCHHHHHHHHHHHH--HHcCCCCEEEEeccc
Q 041308 132 WVLTTWTDDECKLIMENYY--KALLAGRKLIACEPV 165 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~--~~L~pgG~lii~d~~ 165 (244)
..+| -..+ .+++.+. ++|+|||.+++....
T Consensus 118 ~~~~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 118 PPYA-MDLA---ALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CCTT-SCTT---HHHHHHHHHTCEEEEEEEEEEEET
T ss_pred CCCc-hhHH---HHHHHHHhhcccCCCcEEEEEeCC
Confidence 8776 2222 3445555 999999999986653
No 196
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=99.25 E-value=1.6e-11 Score=101.87 Aligned_cols=103 Identities=8% Similarity=-0.049 Sum_probs=73.5
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC--C------CeeEE--eCCCCCCCCc-
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI--P------EVTHI--GGDMFKSIHV- 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~--~------~i~~~--~gd~~~~~p~- 124 (244)
+.+... +++..+|||+|||+|.++..++++ .+ ++++|+..|+..+++. . ++.++ .+|+.+.-+.
T Consensus 74 i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~-V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~ 148 (276)
T 2wa2_A 74 IDERGG-VELKGTVVDLGCGRGSWSYYAASQ---PN-VREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQ 148 (276)
T ss_dssp HHHTTS-CCCCEEEEEESCTTCHHHHHHHTS---TT-EEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCC
T ss_pred HHHcCC-CCCCCEEEEeccCCCHHHHHHHHc---CC-EEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCC
Confidence 444432 567789999999999999999987 46 9999993365444322 2 78999 8998653222
Q ss_pred ceEEEeccccccCCHH----H-HHHHHHHHHHHcCCCC--EEEEecc
Q 041308 125 VDAIFMKWVLTTWTDD----E-CKLIMENYYKALLAGR--KLIACEP 164 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~----~-~~~~l~~~~~~L~pgG--~lii~d~ 164 (244)
.|+|++... ++.... . ...+|+++.++||||| .+++...
T Consensus 149 fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 149 ADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred cCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 599999866 443221 1 1247899999999999 9888544
No 197
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=99.24 E-value=2.8e-11 Score=101.82 Aligned_cols=96 Identities=13% Similarity=0.009 Sum_probs=70.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-----hHHHHhCCC--C--CCeeEEeC-CCCCCCC-cceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-----PEVVAKAPS--I--PEVTHIGG-DMFKSIH-VVDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-----~~~i~~a~~--~--~~i~~~~g-d~~~~~p-~~D~v~~~ 131 (244)
+++..+|||+|||+|.++..++++ .+ ++++|. +.+++..+. . +++.++.+ |+.+.-+ ..|+|++.
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~-V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd 155 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KN-VREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCD 155 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TT-EEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CC-EEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEEC
Confidence 566789999999999999999987 36 999998 544433321 2 57999999 8876422 35999997
Q ss_pred cccc---cCCHHH-HHHHHHHHHHHcCCCCEEEEe
Q 041308 132 WVLT---TWTDDE-CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 132 ~~lh---~~~~~~-~~~~l~~~~~~L~pgG~lii~ 162 (244)
..++ +..+.. ...+|+.+.++|||||.|++.
T Consensus 156 ~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 156 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6653 222222 225799999999999988874
No 198
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.24 E-value=4.2e-12 Score=108.02 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=74.8
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc--ceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV--VDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~--~D~v~~~~~ 133 (244)
.+..+|||||||+|.++..+++. +..+ ++++|...+++.+++. ++++++.+|+.+. +|. .|+|++..+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~-v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKH-VIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCE-EEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 34589999999999999999876 4446 9999995578777642 5799999999775 553 599998866
Q ss_pred cccCC-HHHHHHHHHHHHHHcCCCCEEEE
Q 041308 134 LTTWT-DDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 134 lh~~~-~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.+++. ......+++++.+.|||||+++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 55433 22345789999999999999973
No 199
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.24 E-value=1.4e-11 Score=105.79 Aligned_cols=110 Identities=13% Similarity=-0.046 Sum_probs=85.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p 123 (244)
+..++.... +++..+|||+|||+|.+++.++... |..+ ++++|+ +.+++.|+++ +++++..+|+.+. .+
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~-v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSP-VYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSC-EEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCce-EEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 444556565 7888999999999999999999988 8888 999999 9999998864 3799999999764 22
Q ss_pred --cceEEEeccccccCCH--H----HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 --VVDAIFMKWVLTTWTD--D----ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 --~~D~v~~~~~lh~~~~--~----~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..|+|++....+.... . ....+++++.+.|+|||++++...
T Consensus 270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2499998655433111 1 125789999999999999999643
No 200
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.24 E-value=1.5e-11 Score=98.68 Aligned_cols=93 Identities=19% Similarity=0.131 Sum_probs=77.3
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-----CCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCCC---
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-----CFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKSI--- 122 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~~--- 122 (244)
.++..+|||+|||+|.++..+++.. |..+ ++++|. +.+++.++++ .+++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSY-VIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCE-EEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCE-EEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 5567899999999999999999886 4567 999999 9999888753 47999999997754
Q ss_pred -Cc---ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 123 -HV---VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 123 -p~---~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+. .|+|++...+|++. +++.+.|+|||++++.-.
T Consensus 157 ~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEc
Confidence 32 49999999998753 677899999999998654
No 201
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=99.23 E-value=1.2e-11 Score=102.71 Aligned_cols=97 Identities=22% Similarity=0.199 Sum_probs=75.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------CCCeeEEeCCCCCCC---Cc-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------IPEVTHIGGDMFKSI---HV-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------~~~i~~~~gd~~~~~---p~-~D~v~ 129 (244)
++.+|||||||+|.+++.+++..+..+ ++++|+ +.+++.+++ .+|++++.+|..+.+ +. .|+|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKK-ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSE-EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCce-EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 458999999999999999998756667 999999 999988764 268999999987642 22 59999
Q ss_pred eccccccCCHHH--HHHHHHHHHHHcCCCCEEEEe
Q 041308 130 MKWVLTTWTDDE--CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 130 ~~~~lh~~~~~~--~~~~l~~~~~~L~pgG~lii~ 162 (244)
+....+..+... ...++++++++|+|||.+++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 865543222110 147899999999999999985
No 202
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.22 E-value=4.5e-12 Score=103.59 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=78.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---C------Cc-
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---I------HV- 124 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~------p~- 124 (244)
.+..+|||||||+|..+..+++..| +.+ ++++|. +.+++.++++ ++++++.+|..+. + +.
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGK-ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCE-EEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 4568999999999999999999987 677 999999 9999888753 5799999998653 2 12
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
.|+|++.... .....+++++.+.|||||.+++-+...
T Consensus 157 fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 157 YDFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp BSEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 4999976432 224578999999999999999866543
No 203
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.22 E-value=3.6e-11 Score=97.65 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=81.0
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC-Cc
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI-HV 124 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~-p~ 124 (244)
..++..++ ..+..+|||+|||+|.++..+++. ..+ ++++|. +.+++.++++ +++++..+|+.+.. +.
T Consensus 81 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 156 (248)
T 2yvl_A 81 FYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGE-VWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE 156 (248)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCE-EEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC
Confidence 34566666 677889999999999999999988 567 999999 9998888753 68999999998875 54
Q ss_pred --ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 --VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 --~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+|++. .++. ..+++++.++|+|||++++...
T Consensus 157 ~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 157 GIFHAAFVD-----VREP--WHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp TCBSEEEEC-----SSCG--GGGHHHHHHHBCTTCEEEEEES
T ss_pred CcccEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence 4999873 2322 3779999999999999999765
No 204
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.22 E-value=1.2e-13 Score=112.20 Aligned_cols=134 Identities=13% Similarity=0.010 Sum_probs=95.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEecccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKWVL 134 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~~l 134 (244)
+..+|||+|||+|.++..+++.. .+ ++++|+ +.+++.++++ ++++++.+|+.+..+. .|+|++...+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MR-VIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPW 154 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCC
T ss_pred CCCEEEECccccCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCc
Confidence 56899999999999999999875 56 999999 9999988763 4899999999765333 4999999999
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeE
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHL 214 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 214 (244)
|+..+.. ..+.+++++|+|||.+++........ +... .-......+++..++...|...+
T Consensus 155 ~~~~~~~--~~~~~~~~~L~pgG~~i~~~~~~~~~-------------~~~~-----~lp~~~~~~~~~~~l~~~g~~~i 214 (241)
T 3gdh_A 155 GGPDYAT--AETFDIRTMMSPDGFEIFRLSKKITN-------------NIVY-----FLPRNADIDQVASLAGPGGQVEI 214 (241)
T ss_dssp SSGGGGG--SSSBCTTTSCSSCHHHHHHHHHHHCS-------------CEEE-----EEETTBCHHHHHHTTCTTCCEEE
T ss_pred CCcchhh--hHHHHHHhhcCCcceeHHHHHHhhCC-------------ceEE-----ECCCCCCHHHHHHHhccCCCEEE
Confidence 9877653 36778999999999966532211000 0000 00122356778888888887666
Q ss_pred EEEEccc
Q 041308 215 RAFISII 221 (244)
Q Consensus 215 ~~~~~~~ 221 (244)
......+
T Consensus 215 ~~~~~~~ 221 (241)
T 3gdh_A 215 EQNFLNN 221 (241)
T ss_dssp EEEEETT
T ss_pred EehhhcC
Confidence 5544433
No 205
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.21 E-value=1.9e-11 Score=104.25 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=80.2
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH-cCCCCeEEEeec-hHHHHhCCCC-----------------CCeeEE
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK-HCFICEGINFDL-PEVVAKAPSI-----------------PEVTHI 114 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-~~~i~~a~~~-----------------~~i~~~ 114 (244)
..++..++ ..+..+|||+|||+|.++..+++. .|..+ ++++|. +.+++.|+++ .++++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGR-VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 34566666 677899999999999999999998 57778 999999 9898887652 579999
Q ss_pred eCCCCCC---CCc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 115 GGDMFKS---IHV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 115 ~gd~~~~---~p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.+|+.+. ++. .|+|++...- + ..+++++.++|+|||++++...
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~~~-----~--~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDMLN-----P--HVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ESCTTCCC-------EEEEEECSSS-----T--TTTHHHHGGGEEEEEEEEEEES
T ss_pred ECChHHcccccCCCCeeEEEECCCC-----H--HHHHHHHHHhcCCCcEEEEEeC
Confidence 9999874 333 4999874321 1 1378999999999999998765
No 206
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=99.21 E-value=8.1e-12 Score=104.22 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=77.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p 123 (244)
++.+++.++ ..+..+|||||||+|.++..+++... + ++++|+ +.+++.+++. ++++++.+|+.+. ++
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--K-VVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--E-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--E-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 455666666 67778999999999999999999854 5 999999 9998877642 4799999999874 66
Q ss_pred cceEEEeccccccCCHHHHHHHHH--------------HH--HHHcCCCCEEE
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIME--------------NY--YKALLAGRKLI 160 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~--------------~~--~~~L~pgG~li 160 (244)
..|+|+++... ++..+...+++. ++ +++|+|||+++
T Consensus 93 ~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 93 FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 67998885444 455444445543 33 46999999663
No 207
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.20 E-value=6.8e-12 Score=101.77 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=78.5
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCC-----------
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSI----------- 122 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~----------- 122 (244)
..+..+|||||||+|..+..+++..| ..+ ++++|. +.+++.++++ .++++..+|..+.+
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGK-ILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS 136 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence 34568999999999999999999987 567 999999 9999888753 45999999986532
Q ss_pred ---------CcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 123 ---------HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 123 ---------p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
...|+|++.... +....+++++.+.|+|||++++.+...
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred ccccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 225999987543 234578999999999999999876544
No 208
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.20 E-value=4.5e-11 Score=95.90 Aligned_cols=93 Identities=20% Similarity=0.153 Sum_probs=76.6
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCCCC-c--ce
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKSIH-V--VD 126 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~~p-~--~D 126 (244)
..+..+|||+|||+|..+..+++.. +..+ ++++|. +.+++.++++ .+++++.+|..+..+ . .|
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 153 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGK-VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 153 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcC
Confidence 4567899999999999999999885 5568 999999 9999888642 479999999876533 2 49
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+|++...++++. +++.+.|||||++++...
T Consensus 154 ~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 154 AIHVGAAAPVVP--------QALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEEECSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred EEEECCchHHHH--------HHHHHhcCCCcEEEEEEe
Confidence 999998887754 567899999999999754
No 209
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=99.18 E-value=9.1e-12 Score=103.82 Aligned_cols=98 Identities=18% Similarity=0.121 Sum_probs=77.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------CCCeeEEeCCCCCCC---Cc-ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------IPEVTHIGGDMFKSI---HV-VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------~~~i~~~~gd~~~~~---p~-~D~v 128 (244)
+++.+|||||||+|..++.+++..|..+ ++++|+ +.+++.+++ .++++++.+|..+.+ +. .|+|
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVEN-IDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 4558999999999999999998766778 999999 999988764 268999999986542 23 5999
Q ss_pred EeccccccCCHHHH--HHHHHHHHHHcCCCCEEEEe
Q 041308 129 FMKWVLTTWTDDEC--KLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 129 ~~~~~lh~~~~~~~--~~~l~~~~~~L~pgG~lii~ 162 (244)
++....+..+.... ..++++++++|+|||.+++.
T Consensus 156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 98654433222221 58899999999999999985
No 210
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=99.18 E-value=1.7e-11 Score=102.10 Aligned_cols=96 Identities=20% Similarity=0.190 Sum_probs=73.8
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------------CCCeeEEeCCCCCCC--Cc-
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------------IPEVTHIGGDMFKSI--HV- 124 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------------~~~i~~~~gd~~~~~--p~- 124 (244)
++.+|||||||+|.+++.+++. +..+ ++++|+ +.+++.|++ .++++++.+|..+.+ +.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~-v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDE-VIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSE-EEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 4589999999999999999988 7778 999999 999887652 367999999975532 22
Q ss_pred ceEEEeccccccCCHHH--HHHHHHHHHHHcCCCCEEEEe
Q 041308 125 VDAIFMKWVLTTWTDDE--CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~--~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|+|++....+.-+... ...++++++++|+|||.+++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 59999876543222121 257899999999999999985
No 211
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.17 E-value=9.4e-12 Score=100.04 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=78.5
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---C------Cc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---I------HV 124 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~------p~ 124 (244)
..+..+|||+|||+|..+..+++..| ..+ ++++|. +.+++.++++ ++++++.+|+.+. + ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~ 145 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGR-VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT 145 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence 34568999999999999999999877 667 999999 9999888753 5899999998653 2 23
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
.|+|++... ......+++++.+.|+|||.+++.+...
T Consensus 146 ~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 146 FDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred ccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 599998644 2224578999999999999999877543
No 212
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=99.17 E-value=1e-11 Score=105.79 Aligned_cols=98 Identities=19% Similarity=0.185 Sum_probs=76.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCC---CCc--ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKS---IHV--VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~---~p~--~D~ 127 (244)
++..+|||||||+|..++.+++..|..+ ++++|+ +.+++.|+++ ++++++.+|+.+. .+. .|+
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~-V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQ-IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 4568999999999999999998777778 999999 9999888752 5899999998653 332 599
Q ss_pred EEeccccccCCHHH--HHHHHHHHHHHcCCCCEEEEe
Q 041308 128 IFMKWVLTTWTDDE--CKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 128 v~~~~~lh~~~~~~--~~~~l~~~~~~L~pgG~lii~ 162 (244)
|++...-+.-..+. ...++++++++|+|||.+++.
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99865421111111 358899999999999999985
No 213
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=99.17 E-value=9.5e-12 Score=100.63 Aligned_cols=98 Identities=16% Similarity=0.101 Sum_probs=78.4
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---C------Ccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---I------HVV 125 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~------p~~ 125 (244)
.+..+|||||||+|..+..+++..| +.+ ++++|. +.+++.|+++ +++++..+|..+. + ...
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQ-IIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 3467999999999999999999887 567 999999 9999888753 4799999997542 2 235
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
|+|++.... .+...+++++.+.|+|||++++.+....
T Consensus 150 D~V~~d~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 150 DLIFIDADK-----RNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEEEECSCG-----GGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred CEEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 999876542 3346789999999999999998766543
No 214
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=99.17 E-value=1.4e-11 Score=100.01 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=77.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC---C------Cc-
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS---I------HV- 124 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~---~------p~- 124 (244)
.+..+|||||||+|..+..+++..| +.+ ++++|. +.+++.++++ ++++++.+|..+. + +.
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGK-ITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 4568999999999999999999987 677 999999 9999888753 4799999998653 2 22
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
.|+|++... ......+++++.+.|+|||.+++-+...
T Consensus 148 fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 148 YDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred cCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 499987632 2334688999999999999998765543
No 215
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.16 E-value=4.8e-11 Score=93.95 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=68.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCCCc-ceEEEeccccccCCH
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSIHV-VDAIFMKWVLTTWTD 139 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~p~-~D~v~~~~~lh~~~~ 139 (244)
..+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ .+++++.+|+.+ ++. .|+|++...+|++.+
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAES-VTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSE-EEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-----
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccC
Confidence 345689999999999999999987 4446 999999 9999988864 389999999876 444 599999999999876
Q ss_pred HHHHHHHHHHHHHc
Q 041308 140 DECKLIMENYYKAL 153 (244)
Q Consensus 140 ~~~~~~l~~~~~~L 153 (244)
....++++++.+.+
T Consensus 126 ~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 126 HSDRAFIDKAFETS 139 (200)
T ss_dssp --CHHHHHHHHHHE
T ss_pred chhHHHHHHHHHhc
Confidence 55567899999998
No 216
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=99.16 E-value=3.8e-11 Score=98.94 Aligned_cols=89 Identities=16% Similarity=0.070 Sum_probs=74.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCCCcceEEEecc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSIHVVDAIFMKW 132 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~p~~D~v~~~~ 132 (244)
+++.+|||||||+|..++.+++. + .+ ++++|+ +.|++.|+++ ++++++.+|..+.+...|+|++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~-v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~ 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-TH-IDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQ 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CE-EEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESS
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CE-EEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECC
Confidence 34589999999999999999988 7 77 999999 9999999863 479999999876553359999762
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+++. .++++++++|+|||.+++.
T Consensus 148 -----~dp~--~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 148 -----EPDI--HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp -----CCCH--HHHHHHHTTEEEEEEEEEE
T ss_pred -----CChH--HHHHHHHHhcCCCcEEEEE
Confidence 3332 4899999999999999985
No 217
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=99.16 E-value=9.1e-12 Score=104.83 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=75.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------CCCeeEEeCCCCCCC---Cc-ceEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------IPEVTHIGGDMFKSI---HV-VDAI 128 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------~~~i~~~~gd~~~~~---p~-~D~v 128 (244)
.+..+|||||||+|.+++.+++..|..+ ++++|+ +.+++.+++ .++++++.+|..+.+ +. .|+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVES-VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 4568999999999999999998877778 999999 999988774 268999999986532 22 5999
Q ss_pred EeccccccCCHH--HHHHHHHHHHHHcCCCCEEEEec
Q 041308 129 FMKWVLTTWTDD--ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 129 ~~~~~lh~~~~~--~~~~~l~~~~~~L~pgG~lii~d 163 (244)
++....+.-+.. ....++++++++|+|||.+++..
T Consensus 173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 986554322211 12468999999999999999854
No 218
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.15 E-value=1.7e-11 Score=101.54 Aligned_cols=97 Identities=14% Similarity=0.057 Sum_probs=80.0
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC-cceEEEeccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH-VVDAIFMKWV 133 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p-~~D~v~~~~~ 133 (244)
+++..+|||+|||+|.++..+++..+..+ ++++|. +.+++.++++ .++.++.+|+.+. .+ ..|+|++...
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~-V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p 195 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKL-VYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYV 195 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSE-EEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCc
Confidence 56678999999999999999999988778 999999 9999988753 5789999999775 21 2599998765
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
. ....+++++.+.|+|||.+++.....
T Consensus 196 ~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 196 H------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp S------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred c------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 4 23468899999999999999877643
No 219
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.15 E-value=1.1e-11 Score=98.08 Aligned_cols=95 Identities=6% Similarity=-0.049 Sum_probs=73.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCC--C--cceEEEeccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSI--H--VVDAIFMKWV 133 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~--p--~~D~v~~~~~ 133 (244)
+..+|||+|||+|.++..++++.. .+ ++++|. +.+++.++++ ++++++.+|+.+.+ + ..|+|++...
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~-V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AG-ATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SE-EEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence 357999999999999999887753 36 999999 9999988753 48999999986632 2 2599998877
Q ss_pred cccCCHHHHHHHHHHHHH--HcCCCCEEEEecc
Q 041308 134 LTTWTDDECKLIMENYYK--ALLAGRKLIACEP 164 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~--~L~pgG~lii~d~ 164 (244)
+| ... ...+++.+.+ +|+|||++++...
T Consensus 132 ~~-~~~--~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 132 FR-RGL--LEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp SS-TTT--HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CC-CCc--HHHHHHHHHhcCccCCCcEEEEEEC
Confidence 55 222 3467777766 4999999998654
No 220
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=99.15 E-value=1.9e-11 Score=103.29 Aligned_cols=98 Identities=18% Similarity=0.143 Sum_probs=77.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-----------CCCeeEEeCCCCCCC---Cc-ceEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-----------IPEVTHIGGDMFKSI---HV-VDAI 128 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-----------~~~i~~~~gd~~~~~---p~-~D~v 128 (244)
+..+|||||||+|.+++.+++..+..+ ++++|+ +.+++.+++ .++++++.+|..+.+ +. .|+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEK-AVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 458999999999999999998766677 999999 999987764 258999999986642 22 5999
Q ss_pred Eecccccc---CCHHH--HHHHHHHHHHHcCCCCEEEEec
Q 041308 129 FMKWVLTT---WTDDE--CKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 129 ~~~~~lh~---~~~~~--~~~~l~~~~~~L~pgG~lii~d 163 (244)
++....|. -+... ...++++++++|+|||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 98766554 11111 2578999999999999999853
No 221
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=99.14 E-value=1.7e-11 Score=103.99 Aligned_cols=97 Identities=18% Similarity=0.094 Sum_probs=75.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------CCCeeEEeCCCCCCC---Cc-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------IPEVTHIGGDMFKSI---HV-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------~~~i~~~~gd~~~~~---p~-~D~v~ 129 (244)
++.+|||||||+|.+++.+++..|..+ ++++|+ +.+++.+++ .++++++.+|..+.+ +. .|+|+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVEN-IDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 458999999999999999998767778 999999 999988764 257999999986542 22 59999
Q ss_pred eccccccCCHH-H--HHHHHHHHHHHcCCCCEEEEec
Q 041308 130 MKWVLTTWTDD-E--CKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 130 ~~~~lh~~~~~-~--~~~~l~~~~~~L~pgG~lii~d 163 (244)
+...- .+... . ...++++++++|+|||.+++..
T Consensus 195 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 86432 22211 1 1588999999999999999853
No 222
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=99.14 E-value=1.2e-11 Score=104.56 Aligned_cols=97 Identities=22% Similarity=0.223 Sum_probs=72.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----------CCCeeEEeCCCCCCC---Cc-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----------IPEVTHIGGDMFKSI---HV-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----------~~~i~~~~gd~~~~~---p~-~D~v~ 129 (244)
+..+|||||||+|..++.+++..|..+ ++++|+ +.+++.|++ .++++++.+|..+.+ +. .|+|+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEK-VTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCE-EEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 458999999999999999998777778 999999 999988764 257999999987642 22 59999
Q ss_pred eccccccCCHHHH---HHHHHHHHHHcCCCCEEEEec
Q 041308 130 MKWVLTTWTDDEC---KLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 130 ~~~~lh~~~~~~~---~~~l~~~~~~L~pgG~lii~d 163 (244)
+... +++.+... ..++++++++|+|||.+++..
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8654 33332221 588999999999999999854
No 223
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.13 E-value=1.2e-10 Score=96.87 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=73.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec--hHHHHhCCCC----------------CCeeEEeCCCCCC---
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL--PEVVAKAPSI----------------PEVTHIGGDMFKS--- 121 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~--~~~i~~a~~~----------------~~i~~~~gd~~~~--- 121 (244)
..+..+|||+|||+|.++..+++.. ..+ ++++|+ +.+++.++++ +++++...|..+.
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~-v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQ-VVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDS 154 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSE-EEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCE-EEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHH
Confidence 3456799999999999999888764 336 999998 5777766532 2688886665432
Q ss_pred C----C--cceEEEeccccccCCHHHHHHHHHHHHHHcC---C--CCEEEEe
Q 041308 122 I----H--VVDAIFMKWVLTTWTDDECKLIMENYYKALL---A--GRKLIAC 162 (244)
Q Consensus 122 ~----p--~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~---p--gG~lii~ 162 (244)
+ + ..|+|++..+++|.++ ...+++.+.++|+ | ||+++++
T Consensus 155 ~~~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 155 LQRCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HHhhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 2 1 2599999999988554 4689999999999 9 9998774
No 224
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=99.13 E-value=3.6e-11 Score=99.69 Aligned_cols=112 Identities=12% Similarity=-0.005 Sum_probs=82.8
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-C----
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-I---- 122 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~---- 122 (244)
+...++ ..++.+|||+|||+|..+..+++..++ .+ ++++|+ +.+++.++++ .+++++.+|+.+. .
T Consensus 75 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 152 (274)
T 3ajd_A 75 PPIVLN-PREDDFILDMCAAPGGKTTHLAQLMKNKGT-IVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLK 152 (274)
T ss_dssp HHHHHC-CCTTCEEEETTCTTCHHHHHHHHHTTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred HHHHhC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCE-EEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhh
Confidence 344445 567789999999999999999998776 67 999999 8888877653 5899999998653 1
Q ss_pred -Cc-ceEEEecccc------cc---CCH-------HHHHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 123 -HV-VDAIFMKWVL------TT---WTD-------DECKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 123 -p~-~D~v~~~~~l------h~---~~~-------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
+. .|+|++.-.+ ++ ++. ....++++++.+.|||||++++..+.....
T Consensus 153 ~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ 217 (274)
T 3ajd_A 153 NEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVE 217 (274)
T ss_dssp TTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTT
T ss_pred ccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChH
Confidence 22 4999976322 21 111 112578999999999999999987765443
No 225
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.12 E-value=2.1e-10 Score=90.63 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=89.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----C-CeeEEeCCCCCCCCcceEEEecccccc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----P-EVTHIGGDMFKSIHVVDAIFMKWVLTT 136 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~-~i~~~~gd~~~~~p~~D~v~~~~~lh~ 136 (244)
..+..+|||+|||+|.++..+++..+ .+ ++++|+ +.+++.++++ . +++++.+|+.+.-...|+|++...+|.
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGA-KE-VICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGS 124 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcc
Confidence 34568999999999999999998743 36 999999 9999888764 1 799999998763223599999998888
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRA 216 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 216 (244)
........+++++.+.+ |+ +++... +. + .+.+...+++++.||+...+
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~-~~~~~~--~~----~-----------------------~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DV-VYSIHL--AK----P-----------------------EVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SE-EEEEEE--CC----H-----------------------HHHHHHHHHHHHTTEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--Cc-EEEEEe--CC----c-----------------------CCHHHHHHHHHHCCCeEEEE
Confidence 76544567899999998 44 443321 00 0 01334567788899887766
Q ss_pred EEc
Q 041308 217 FIS 219 (244)
Q Consensus 217 ~~~ 219 (244)
...
T Consensus 173 ~~~ 175 (207)
T 1wy7_A 173 LTT 175 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 226
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=99.12 E-value=1.9e-11 Score=102.53 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=73.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----------CCeeEEeCCCCCCC---Cc-ceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----------PEVTHIGGDMFKSI---HV-VDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----------~~i~~~~gd~~~~~---p~-~D~v~ 129 (244)
+..+|||||||+|..++.+++..+..+ ++++|+ +.+++.++++ ++++++.+|..+.+ +. .|+|+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEK-AILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 358999999999999999998766677 999999 9999887642 68999999976532 22 59999
Q ss_pred eccccccCCHH---HHHHHHHHHHHHcCCCCEEEEe
Q 041308 130 MKWVLTTWTDD---ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 130 ~~~~lh~~~~~---~~~~~l~~~~~~L~pgG~lii~ 162 (244)
+...-+..... ....++++++++|+|||.+++.
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 75432212111 1157899999999999999985
No 227
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=99.10 E-value=8.1e-11 Score=101.48 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=71.7
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEecccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~ 136 (244)
+.+|||||||+|.++..+++.+. -+ ++++|..+|++.|++. ++|+++.+|+.+. +|+ .|+|++.++-+.
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA-~~-V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGA-RR-VYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-SE-EEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCEEEEeCCCccHHHHHHHHhCC-CE-EEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 47999999999999987777643 35 9999995577777642 7899999999775 776 599998655444
Q ss_pred CCHH-HHHHHHHHHHHHcCCCCEEEE
Q 041308 137 WTDD-ECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 137 ~~~~-~~~~~l~~~~~~L~pgG~lii 161 (244)
+..+ ....++....+.|+|||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 3323 345677888899999999864
No 228
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.09 E-value=1.6e-10 Score=102.39 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=84.8
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CC-
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IH- 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p- 123 (244)
+...++ ..++.+|||+|||+|..+..+++..++ .+ ++++|+ +.+++.++++ .+++++.+|+.+. ++
T Consensus 251 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 328 (450)
T 2yxl_A 251 ASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGK-IYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGE 328 (450)
T ss_dssp HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCS
T ss_pred HHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhcc
Confidence 344445 567789999999999999999998876 67 999999 8888777653 5799999998764 33
Q ss_pred c-ceEEEe------ccccccCCHHH--------------HHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 124 V-VDAIFM------KWVLTTWTDDE--------------CKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 124 ~-~D~v~~------~~~lh~~~~~~--------------~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
. .|+|++ ..++++.++.. ...+|+++.+.|||||++++.++....
T Consensus 329 ~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~ 394 (450)
T 2yxl_A 329 EVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK 394 (450)
T ss_dssp SCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred CCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2 599996 23444433321 157899999999999999998876543
No 229
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.08 E-value=2.6e-10 Score=97.04 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=74.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C--CeeEEeCCCCCCCC-------cceEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P--EVTHIGGDMFKSIH-------VVDAI 128 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~--~i~~~~gd~~~~~p-------~~D~v 128 (244)
+..+|||+|||+|.++..+++... + ++++|+ +.+++.++++ . +++++.+|+++.++ ..|+|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~-V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--E-VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--E-EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 457999999999999999998654 7 999999 9999988863 2 59999999876432 25999
Q ss_pred EeccccccC--------CHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 129 FMKWVLTTW--------TDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 129 ~~~~~lh~~--------~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
++....... ..+....+++++.+.|+|||.+++...
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 984321110 023356899999999999999877554
No 230
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=99.07 E-value=3.3e-10 Score=99.15 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=81.0
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCc--ceE
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHV--VDA 127 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~--~D~ 127 (244)
+++.+++.++ ..+..+|||+|||+|.++..++++. +..+ ++++|+ +.+++.| .+++++.+|+++..+. .|+
T Consensus 27 l~~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~-i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~ 101 (421)
T 2ih2_A 27 VVDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYR-FVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDL 101 (421)
T ss_dssp HHHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSE-EEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEE
T ss_pred HHHHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCe-EEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCE
Confidence 3444555555 3445699999999999999999887 5677 999999 8888777 6899999999876432 599
Q ss_pred EEeccccc----------cCCHHHH-----------------HHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVLT----------TWTDDEC-----------------KLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~lh----------~~~~~~~-----------------~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+++--.. |+.++.. ..+++++.+.|+|||+++++-+
T Consensus 102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 99952221 2333322 1568999999999999998754
No 231
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.05 E-value=3.3e-11 Score=109.77 Aligned_cols=100 Identities=11% Similarity=0.026 Sum_probs=80.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc--ceEEEecc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV--VDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~--~D~v~~~~ 132 (244)
.+.+|||||||+|.++..+++.+ .+ |+++|+ +.+|+.|+.. .++++..++..+. .+. .|+|++.-
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~g--a~-V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKG--AT-IVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhCC--CE-EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 45799999999999999999874 56 999999 9999988742 3689999988543 232 59999999
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
++||+++++...-+..+.+.|+++|+.++...+..
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~ 177 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVK 177 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEeccc
Confidence 99999988755667778888999888887765443
No 232
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=99.05 E-value=7.2e-10 Score=92.34 Aligned_cols=92 Identities=14% Similarity=0.043 Sum_probs=67.1
Q ss_pred CCCcceEEEEcC------CccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCCCCeeE-EeCCCCCC-CCc-ceEEEec
Q 041308 63 FKGVKRLVDVGG------SAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSIPEVTH-IGGDMFKS-IHV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~------G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~~~i~~-~~gd~~~~-~p~-~D~v~~~ 131 (244)
+++..+|||+|| |+|. ..+++..| ..+ ++++|+ +. + +++++ +.+|+.+. ++. .|+|++.
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~-V~gvDis~~-v------~~v~~~i~gD~~~~~~~~~fD~Vvsn 130 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTL-LVDSDLNDF-V------SDADSTLIGDCATVHTANKWDLIISD 130 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCE-EEEEESSCC-B------CSSSEEEESCGGGCCCSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCE-EEEEECCCC-C------CCCEEEEECccccCCccCcccEEEEc
Confidence 677889999999 5577 44566666 578 999999 65 2 47889 99999775 443 5999986
Q ss_pred ccccc--------CC-HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTT--------WT-DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~--------~~-~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
...+. .. .+....++++++++|||||+|++...
T Consensus 131 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 131 MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp CCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 43221 10 12245789999999999999998643
No 233
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=99.04 E-value=7.6e-11 Score=96.09 Aligned_cols=109 Identities=12% Similarity=0.116 Sum_probs=79.1
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc-
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~- 124 (244)
..+.+++.++ ..+..+|||+|||+|.++..+++.. .+ ++++|+ +.+++.++++ ++++++.+|+.+. ++.
T Consensus 17 ~~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~-v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~ 92 (245)
T 1yub_A 17 VLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQ-VTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SE-EEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--Ce-EEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccC
Confidence 3455677776 6777899999999999999999885 56 999999 9999988875 5799999999874 542
Q ss_pred ceEEEeccccccCCHHHHHHHH--------------HHHHHHcCCCCEEEEecc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIM--------------ENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l--------------~~~~~~L~pgG~lii~d~ 164 (244)
...+++.+.-.+.+......++ +.+.+.|+|||++.+...
T Consensus 93 ~~f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 93 QRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp SEEEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred CCcEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 2223333333333333333333 668999999999877543
No 234
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=99.02 E-value=2e-10 Score=98.16 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=81.5
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCC-----CCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCCCc--ceEEEe
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCF-----ICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSIHV--VDAIFM 130 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~p~--~D~v~~ 130 (244)
.+..+|||+|||+|.++..+++..+. .+ ++++|+ +.+++.|+.+ .++++..+|.+++.+. .|+|++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~-v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVH-ASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 207 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCce-EEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEE
Confidence 45689999999999999999988764 56 999999 9998888753 3689999999887442 599999
Q ss_pred ccccccCCHHHH----------------HHHHHHHHHHcCCCCEEEEecc
Q 041308 131 KWVLTTWTDDEC----------------KLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 131 ~~~lh~~~~~~~----------------~~~l~~~~~~L~pgG~lii~d~ 164 (244)
...+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 988777654432 2589999999999999998653
No 235
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=99.01 E-value=3.7e-10 Score=92.00 Aligned_cols=104 Identities=9% Similarity=0.121 Sum_probs=73.0
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc-
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~- 124 (244)
+.+.+++.++ ..+..+|||+|||+|.++..++++. .+ ++++|+ +.+++.++++ ++++++.+|+.+. ++.
T Consensus 18 ~~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~-v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~ 93 (244)
T 1qam_A 18 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NF-VTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKN 93 (244)
T ss_dssp HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--Ce-EEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccC
Confidence 3456777776 6777899999999999999999986 46 999999 9998887652 6899999999774 553
Q ss_pred ceEEEeccccccCCHHHHHHHH--------------HHHHHHcCCCCEE
Q 041308 125 VDAIFMKWVLTTWTDDECKLIM--------------ENYYKALLAGRKL 159 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l--------------~~~~~~L~pgG~l 159 (244)
.+..++.+.-++++.+-..+++ ..+.|.++|+|++
T Consensus 94 ~~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l 142 (244)
T 1qam_A 94 QSYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL 142 (244)
T ss_dssp CCCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred CCeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence 3434444444444443333333 2256666776654
No 236
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=99.01 E-value=5.2e-10 Score=96.72 Aligned_cols=122 Identities=13% Similarity=0.028 Sum_probs=90.5
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc--ceEEEec
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV--VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~--~D~v~~~ 131 (244)
+.+..+|||+|||+|.+++.++...+..+ ++++|+ +.+++.|+++ +++++..+|+.+. .+. .|+|+++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~-v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n 293 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGE-IIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN 293 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSC-EEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence 45678999999999999999999887667 999999 9999998864 4799999999774 332 4999997
Q ss_pred cccccCC------HHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHH
Q 041308 132 WVLTTWT------DDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQL 205 (244)
Q Consensus 132 ~~lh~~~------~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~l 205 (244)
..++... .+-...+++++.++| ||.++++.. +.+.+++.
T Consensus 294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~---------------------------------~~~~~~~~ 338 (373)
T 3tm4_A 294 LPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT---------------------------------EKKAIEEA 338 (373)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES---------------------------------CHHHHHHH
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC---------------------------------CHHHHHHH
Confidence 6544321 111257888999989 555555432 13445678
Q ss_pred HHhCCCCeEEEEEcc
Q 041308 206 GFSTGFPHLRAFISI 220 (244)
Q Consensus 206 l~~aGf~~~~~~~~~ 220 (244)
+.+.||+..+...+.
T Consensus 339 ~~~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 339 IAENGFEIIHHRVIG 353 (373)
T ss_dssp HHHTTEEEEEEEEEE
T ss_pred HHHcCCEEEEEEEEE
Confidence 889999988876653
No 237
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=99.00 E-value=7.7e-10 Score=91.60 Aligned_cols=121 Identities=14% Similarity=0.028 Sum_probs=90.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCc--ceEEEecc
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHV--VDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~--~D~v~~~~ 132 (244)
.+++.+|||+|||+|.++..+++.. ..+ ++++|+ |..++.++++ +++++..+|..+..+. +|.|++..
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~-V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~ 200 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAK-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY 200 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCe-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECC
Confidence 4567999999999999999999774 457 999999 9998888763 6799999999876444 59988764
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCC
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 212 (244)
.-. ...++..+.++|||||.+.+.+.+..+... ....+.++++.++.|++
T Consensus 201 p~~------~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~------------------------~~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 201 VVR------THEFIPKALSIAKDGAIIHYHNTVPEKLMP------------------------REPFETFKRITKEYGYD 250 (278)
T ss_dssp CSS------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHTTCE
T ss_pred CCc------HHHHHHHHHHHcCCCCEEEEEeeecccccc------------------------hhHHHHHHHHHHHcCCc
Confidence 321 236788899999999999887654322100 01245667888899987
Q ss_pred eEE
Q 041308 213 HLR 215 (244)
Q Consensus 213 ~~~ 215 (244)
+..
T Consensus 251 v~~ 253 (278)
T 3k6r_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
No 238
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.99 E-value=3.6e-10 Score=99.48 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=83.9
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC---CCc--
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS---IHV-- 124 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~---~p~-- 124 (244)
+...++ ..++.+|||+|||+|..+..+++..++.+ ++++|+ +.+++.++++ .+++++.+|+.+. ++.
T Consensus 238 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~ 315 (429)
T 1sqg_A 238 CMTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQ 315 (429)
T ss_dssp HHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCC
T ss_pred HHHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCC
Confidence 334444 56678999999999999999999988878 999999 8888777653 3578999999765 232
Q ss_pred ceEEEec------cccccCCHH-------H-------HHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 125 VDAIFMK------WVLTTWTDD-------E-------CKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 125 ~D~v~~~------~~lh~~~~~-------~-------~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
.|+|++. .++++.++. + ...+|+++.+.|||||++++.++....
T Consensus 316 fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~ 379 (429)
T 1sqg_A 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 379 (429)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred CCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 5999862 344443331 1 147899999999999999998876543
No 239
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.97 E-value=3.7e-10 Score=94.78 Aligned_cols=101 Identities=12% Similarity=0.134 Sum_probs=73.3
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC-CC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS-IH 123 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~-~p 123 (244)
+.+.+++.++ ..+..+|||+|||+|.++..+++.. .+ ++++|+ +.+++.++++ ++++++.+|+.+. ++
T Consensus 30 i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~~--~~-v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~ 105 (299)
T 2h1r_A 30 ILDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPLA--KK-VITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP 105 (299)
T ss_dssp HHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTTS--SE-EEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC
T ss_pred HHHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc
Confidence 3455666666 6677899999999999999999763 46 999999 9998887752 6899999999775 55
Q ss_pred cceEEEeccccccCCHHHHHHHH---------------HHHHHHcCCCC
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIM---------------ENYYKALLAGR 157 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l---------------~~~~~~L~pgG 157 (244)
..|+|++.... ++..+...+++ ..+.|.++|+|
T Consensus 106 ~~D~Vv~n~py-~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 106 KFDVCTANIPY-KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred cCCEEEEcCCc-ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 56999886554 46666555666 34678888877
No 240
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.96 E-value=1.2e-09 Score=97.31 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=79.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---CCc-ceEEEec-
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---IHV-VDAIFMK- 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~p~-~D~v~~~- 131 (244)
++.+|||+|||+|..+..+++..+ ..+ ++++|+ +.+++.++++ .++.++.+|..+. .+. .|+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~-V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGA-ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence 678999999999999999999865 467 999999 9998887753 5799999998763 233 5999972
Q ss_pred -----cccc-------cCCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 132 -----WVLT-------TWTDDE-------CKLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 132 -----~~lh-------~~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
.+++ ++++++ ..++|+++.+.|||||++++..+.....
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~ 252 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQE 252 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSST
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcc
Confidence 1222 233322 2478999999999999999988765443
No 241
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.95 E-value=2.8e-10 Score=100.70 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=82.9
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCC---C
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKS---I 122 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~---~ 122 (244)
..+...++ ..++.+|||+|||+|..+..+++..++ .+ ++++|+ +.+++.++++ . +.++.+|..+. .
T Consensus 91 ~l~a~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~-V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~ 167 (464)
T 3m6w_A 91 QAVGVLLD-PKPGERVLDLAAAPGGKTTHLAARMGGKGL-LLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAF 167 (464)
T ss_dssp HHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHH
T ss_pred HHHHHhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhc
Confidence 33444555 567799999999999999999998765 67 999999 9999888763 4 88999987553 2
Q ss_pred Cc-ceEEEec------cccc-------cCCHHHH-------HHHHHHHHHHcCCCCEEEEecccCCCC
Q 041308 123 HV-VDAIFMK------WVLT-------TWTDDEC-------KLIMENYYKALLAGRKLIACEPVLPDD 169 (244)
Q Consensus 123 p~-~D~v~~~------~~lh-------~~~~~~~-------~~~l~~~~~~L~pgG~lii~d~~~~~~ 169 (244)
+. .|+|++. .+++ +++.++. ..+|+++.+.|||||+++...+.....
T Consensus 168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~e 235 (464)
T 3m6w_A 168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPE 235 (464)
T ss_dssp CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG
T ss_pred cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchh
Confidence 23 5999952 1122 2222222 678999999999999999887765433
No 242
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.95 E-value=3.7e-10 Score=99.72 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=88.1
Q ss_pred HHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCC------CCe
Q 041308 40 LMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSI------PEV 111 (244)
Q Consensus 40 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~------~~i 111 (244)
.|.+..-...+.....+...++ ..++.+|||+|||+|..+..+++..++ .+ ++++|+ +.+++.++++ .++
T Consensus 81 ~~~~G~~~vQd~ss~l~~~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~-V~AvDis~~rl~~~~~n~~r~g~~nv 158 (456)
T 3m4x_A 81 LHQAGYEYSQEPSAMIVGTAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGL-LVTNEIFPKRAKILSENIERWGVSNA 158 (456)
T ss_dssp HHHTTSCEECCTTTHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEECSSHHHHHHHHHHHHHHTCSSE
T ss_pred HHhCCcEEEECHHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCce
Confidence 3444333333333333445555 567789999999999999999988664 57 999999 9888888753 578
Q ss_pred eEEeCCCCCC---CCc-ceEEEeccc------ccc-------CCHH-------HHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 112 THIGGDMFKS---IHV-VDAIFMKWV------LTT-------WTDD-------ECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 112 ~~~~gd~~~~---~p~-~D~v~~~~~------lh~-------~~~~-------~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
.++.+|..+. .+. .|+|++.-- +.. ++.+ ....+|+++.+.|||||+++...+...
T Consensus 159 ~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 159 IVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp EEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 9999987553 223 599987322 221 1111 113789999999999999999887655
Q ss_pred CC
Q 041308 168 DD 169 (244)
Q Consensus 168 ~~ 169 (244)
..
T Consensus 239 ~e 240 (456)
T 3m4x_A 239 PE 240 (456)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 243
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.87 E-value=7.6e-10 Score=96.39 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=76.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C-CeeEEeCCCCCCCC-------cceEEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P-EVTHIGGDMFKSIH-------VVDAIF 129 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~-~i~~~~gd~~~~~p-------~~D~v~ 129 (244)
+..+|||+|||+|.++..+++. +..+ ++++|+ +.+++.++++ . +++++.+|+++.++ ..|+|+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~-v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADE-VIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 5689999999999999999986 3336 999999 9999888763 2 89999999876422 249999
Q ss_pred eccccccCCH-------HHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 130 MKWVLTTWTD-------DECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 130 ~~~~lh~~~~-------~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+.......+. .....+++++.+.|+|||.+++..+.
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 8543322221 33567899999999999999987763
No 244
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.87 E-value=8e-10 Score=95.83 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=75.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC-------cceEEEe
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH-------VVDAIFM 130 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p-------~~D~v~~ 130 (244)
+..+|||+|||+|.++..+++. ..+ ++++|+ +.+++.++++ ++++++.+|+++.++ ..|+|++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~-v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FRE-VVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 5689999999999999999987 346 999999 9999888763 459999999876422 2499998
Q ss_pred ccccccCCH-------HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 131 KWVLTTWTD-------DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 131 ~~~lh~~~~-------~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.-.....+. .....+++++.+.|+|||.+++...
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 543322211 3346789999999999999998765
No 245
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.87 E-value=1.4e-09 Score=92.73 Aligned_cols=92 Identities=10% Similarity=-0.019 Sum_probs=74.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCCCCcceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKSIHVVDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~~p~~D~v~~~~~lh 135 (244)
.++.+|||+|||+|.++.. ++ ...+ ++++|+ +.+++.++++ ++++++.+|+++.+...|+|++...-.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~-V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKK-IYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKF 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTTT
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcHh
Confidence 4568999999999999999 76 3556 999999 9999888763 579999999977664469999863221
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
...+++++.+.|+|||.+++.+..
T Consensus 270 ------~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 270 ------AHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp ------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ------HHHHHHHHHHHcCCCCEEEEEEee
Confidence 137899999999999999997764
No 246
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.86 E-value=2.1e-08 Score=86.27 Aligned_cols=168 Identities=13% Similarity=0.082 Sum_probs=100.5
Q ss_pred cchHHHhccCCCCC-----CcceEEEEcCCccHHHHHHH--------HHc-------CCCCeEEEeech-HH-------H
Q 041308 51 PFMTSVLDGYDGFK-----GVKRLVDVGGSAGDCLRIIL--------QKH-------CFICEGINFDLP-EV-------V 102 (244)
Q Consensus 51 ~~~~~l~~~~~~~~-----~~~~vLDvG~G~G~~~~~l~--------~~~-------p~~~~~~~~D~~-~~-------i 102 (244)
+++++.++.+. .+ ..-+|+|+|||+|.++..+. +++ |+++ +..-|+| +. +
T Consensus 34 ~~~~~ai~~l~-~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~-v~~nDLp~NDFn~lF~~L 111 (374)
T 3b5i_A 34 HLLEETLENVH-LNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFT-AFFSDLPSNDFNTLFQLL 111 (374)
T ss_dssp HHHHHHHHTSC-CCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEE-EEEEECTTSCHHHHHHHS
T ss_pred HHHHHHHHHhh-ccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCcee-EEecCCCccchHHHHhhh
Confidence 34444455554 22 24799999999999988872 222 6777 8888984 22 2
Q ss_pred HhCCC----------C-CC---eeEEeCCCCCC-CCcc--eEEEeccccccCCH--------------------------
Q 041308 103 AKAPS----------I-PE---VTHIGGDMFKS-IHVV--DAIFMKWVLTTWTD-------------------------- 139 (244)
Q Consensus 103 ~~a~~----------~-~~---i~~~~gd~~~~-~p~~--D~v~~~~~lh~~~~-------------------------- 139 (244)
...++ . .+ +.-+.|.+... +|.. |+|+++..||.+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~ 191 (374)
T 3b5i_A 112 PPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEK 191 (374)
T ss_dssp CCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHH
T ss_pred hhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHH
Confidence 22211 0 11 23355777654 7764 99999999998871
Q ss_pred ----------HHHHHHHHHHHHHcCCCCEEEEecccCCCCCC-c-hHH-----hhh-hhcccHhhhh------hhccC--
Q 041308 140 ----------DECKLIMENYYKALLAGRKLIACEPVLPDDSN-E-SQR-----TRA-LLEGDIFVMT------IYRAK-- 193 (244)
Q Consensus 140 ----------~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~-~-~~~-----~~~-~~~~d~~~~~------~~~~~-- 193 (244)
.+...+|+..++.|+|||++++.-...++... . ... ... ..+.++.... +...+
T Consensus 192 v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P 271 (374)
T 3b5i_A 192 TTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIP 271 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCcc
Confidence 13345799999999999999987665543210 0 000 000 0011110000 00011
Q ss_pred ceecCHHHHHHHHH-hCCCCeEEEEEcc
Q 041308 194 GKHKTEQEFKQLGF-STGFPHLRAFISI 220 (244)
Q Consensus 194 ~~~~t~~e~~~ll~-~aGf~~~~~~~~~ 220 (244)
-..++.+|++++++ ++||++..++...
T Consensus 272 ~y~ps~~E~~~~l~~~~~F~I~~le~~~ 299 (374)
T 3b5i_A 272 VYAPSLQDFKEVVDANGSFAIDKLVVYK 299 (374)
T ss_dssp BCCCCHHHHHHHHHHHCSEEEEEEEEEE
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEEEEEe
Confidence 23368999999998 5999998876654
No 247
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.84 E-value=1.6e-09 Score=94.05 Aligned_cols=99 Identities=11% Similarity=0.042 Sum_probs=74.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C--CeeEEeCCCCCCCC-------cceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------P--EVTHIGGDMFKSIH-------VVDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~--~i~~~~gd~~~~~p-------~~D~ 127 (244)
.+..+|||+|||+|.++..+++... .+ ++++|+ +.+++.|+++ . +++++.+|+++.++ ..|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga-~~-V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~ 288 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGA-MA-TTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 288 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTB-SE-EEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCC-CE-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccE
Confidence 4568999999999999999997642 25 999999 9999988763 3 89999999876432 2599
Q ss_pred EEecccc-----ccCC--HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVL-----TTWT--DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~l-----h~~~--~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|++.... ++.. ......+++++.+.|+|||.+++...
T Consensus 289 Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 289 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9985333 1222 12345678899999999999988654
No 248
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.82 E-value=6.8e-09 Score=90.21 Aligned_cols=110 Identities=5% Similarity=-0.090 Sum_probs=82.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC--------------------------------------CCeEE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF--------------------------------------ICEGI 94 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 94 (244)
+..++.... |.+...|||.+||+|.++++++....+ .+ ++
T Consensus 190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-V~ 267 (393)
T 3k0b_A 190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN-II 267 (393)
T ss_dssp HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC-EE
T ss_pred HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce-EE
Confidence 344556665 888899999999999999998876544 57 99
Q ss_pred Eeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEecccccc-CC-HHHHHHHHHHHHHHcCC--CCEEE
Q 041308 95 NFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTT-WT-DDECKLIMENYYKALLA--GRKLI 160 (244)
Q Consensus 95 ~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~-~~-~~~~~~~l~~~~~~L~p--gG~li 160 (244)
++|+ +.+++.|+++ .++++..+|+.+. .+. .|+|+++--.+. +. .++...+.+++.+.||+ ||.++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 9999 9999998863 4699999999875 333 599998855432 22 24456677777777776 88888
Q ss_pred Eecc
Q 041308 161 ACEP 164 (244)
Q Consensus 161 i~d~ 164 (244)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8754
No 249
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.80 E-value=2e-08 Score=86.99 Aligned_cols=111 Identities=9% Similarity=-0.032 Sum_probs=85.6
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC--------------------------------------CCeE
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF--------------------------------------ICEG 93 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 93 (244)
++..++.... |.+...+||.+||+|.++++.+....+ .+ +
T Consensus 182 LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-v 259 (384)
T 3ldg_A 182 MAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD-I 259 (384)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC-E
T ss_pred HHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce-E
Confidence 3444555565 888899999999999999998876544 56 9
Q ss_pred EEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEecccccc-C-CHHHHHHHHHHHHHHcCC--CCEE
Q 041308 94 INFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTT-W-TDDECKLIMENYYKALLA--GRKL 159 (244)
Q Consensus 94 ~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~-~-~~~~~~~~l~~~~~~L~p--gG~l 159 (244)
+++|+ +.+++.|+++ .++++..+|+.+. .+. .|+|+++--.+. + ..++...+.+++.+.||+ ||.+
T Consensus 260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 339 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQ 339 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEE
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 99999 9999998864 4699999999875 333 599999855432 3 245667888888888887 9998
Q ss_pred EEecc
Q 041308 160 IACEP 164 (244)
Q Consensus 160 ii~d~ 164 (244)
+++..
T Consensus 340 ~iit~ 344 (384)
T 3ldg_A 340 FILTN 344 (384)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88754
No 250
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.80 E-value=2.1e-09 Score=95.05 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=82.7
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-------------CCCCeEEEeec-hHHHHhCCCC------C--C
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-------------CFICEGINFDL-PEVVAKAPSI------P--E 110 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~~D~-~~~i~~a~~~------~--~ 110 (244)
++.+++.+. ..+..+|||.|||+|.++..+.+.. +..+ ++++|+ +.+++.|+.+ . +
T Consensus 160 ~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~-i~G~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 160 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKA-LHGVDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTT-EEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeE-EEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence 444555555 4556799999999999999988763 3467 999999 9888877642 2 6
Q ss_pred eeEEeCCCCCC-CC-cceEEEeccccccCCHH---------------HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 111 VTHIGGDMFKS-IH-VVDAIFMKWVLTTWTDD---------------ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 111 i~~~~gd~~~~-~p-~~D~v~~~~~lh~~~~~---------------~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+++..+|.+.. .. ..|+|+++-.+++.... ....+++++.+.|+|||+++++-+
T Consensus 238 ~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 238 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 78999999876 32 35999998776653321 114789999999999999988754
No 251
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.79 E-value=1.2e-08 Score=88.42 Aligned_cols=110 Identities=14% Similarity=0.008 Sum_probs=84.3
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC--------------------------------------CCeEE
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF--------------------------------------ICEGI 94 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 94 (244)
+..++.... |.+..+|||.+||+|.++++++....+ .+ ++
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-V~ 261 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK-IY 261 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC-EE
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce-EE
Confidence 444555665 888899999999999999999876433 57 99
Q ss_pred Eeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CCc-ceEEEecccccc-CC-HHHHHHHHHHHHHHcCC--CCEEE
Q 041308 95 NFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTT-WT-DDECKLIMENYYKALLA--GRKLI 160 (244)
Q Consensus 95 ~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~-~~-~~~~~~~l~~~~~~L~p--gG~li 160 (244)
++|+ +.+++.|+++ +++++..+|+.+. .+. .|+|+++--.+. +. .++...+.+++.+.|++ |+.++
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 9999 9999999864 4799999999875 333 499999766532 22 34566788888888887 88888
Q ss_pred Eecc
Q 041308 161 ACEP 164 (244)
Q Consensus 161 i~d~ 164 (244)
++..
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8754
No 252
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.77 E-value=3.1e-09 Score=92.55 Aligned_cols=98 Identities=18% Similarity=0.073 Sum_probs=75.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------C-CeeEEeCCCCCCCC-------cceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------P-EVTHIGGDMFKSIH-------VVDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~-~i~~~~gd~~~~~p-------~~D~ 127 (244)
.+..+|||+|||+|.++..+++.. ..+ ++++|+ +.+++.++++ . +++++.+|+++.++ ..|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~-V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~ 296 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence 356899999999999999999864 346 999999 9999888753 2 78999999876532 2599
Q ss_pred EEecccc--------ccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVL--------TTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~l--------h~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|++.-.. +... .....++.++.+.|+|||.+++...
T Consensus 297 Ii~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 297 IVMDPPKFVENKSQLMGAC-RGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EEECCSSTTTCSSSSSCCC-THHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEECCCCCCCChhHHHHHH-HHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9986322 1111 2346889999999999999998664
No 253
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.77 E-value=6.7e-09 Score=90.22 Aligned_cols=99 Identities=11% Similarity=0.034 Sum_probs=74.2
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCCC---Cc-ceEEEeccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKSI---HV-VDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~~---p~-~D~v~~~~~ 133 (244)
+++.+|||+|||||.++..+++.. .+ ++++|+ +.+++.++++ -...+..+|+++.+ +. .|+|++.-.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~g--a~-V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKG--AY-ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred cCCCeEEEcccchhHHHHHHHHcC--Ce-EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 447899999999999999999864 56 999999 9999988864 22357789987642 22 599998644
Q ss_pred cccCCH-------HHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 134 LTTWTD-------DECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 134 lh~~~~-------~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
...-+. .....+++++.+.|+|||++++..+.
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 322111 22357899999999999999987764
No 254
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.75 E-value=6.2e-09 Score=94.94 Aligned_cols=128 Identities=15% Similarity=0.101 Sum_probs=87.9
Q ss_pred ccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc----CCCCeEEEeechHHHH
Q 041308 28 YSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH----CFICEGINFDLPEVVA 103 (244)
Q Consensus 28 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~~D~~~~i~ 103 (244)
||..++|+-..+.|++|+...-.. .+.+.-. ......|||||||+|-++...++.. -+++ +.+++...+..
T Consensus 324 YevFEkD~vKy~~Ye~AI~~Al~d---~~~~~~~-~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vk-VyAVEknp~A~ 398 (637)
T 4gqb_A 324 YEVFEKDPIKYSQYQQAIYKCLLD---RVPEEEK-DTNVQVLMVLGAGRGPLVNASLRAAKQADRRIK-LYAVEKNPNAV 398 (637)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH---HSCGGGT-TTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEE-EEEEESCHHHH
T ss_pred hhhhcCChhhHHHHHHHHHHHHHH---hhhhccc-cCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcE-EEEEECCHHHH
Confidence 777888988888999987632111 1111111 2344689999999999855444432 2346 89999844555
Q ss_pred hCCCC-------CCeeEEeCCCCCC-CCc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 104 KAPSI-------PEVTHIGGDMFKS-IHV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 104 ~a~~~-------~~i~~~~gd~~~~-~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
.+++. ++|+++.||+.+- +|+ .|+||+.++=..+-.+-...++-...|.|||||.++
T Consensus 399 ~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 399 VTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 55542 7899999999885 787 599998866554444545667777889999999864
No 255
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.73 E-value=4.2e-09 Score=89.82 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=72.3
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------------CCeeEEeCCCCCCCC-----
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------------PEVTHIGGDMFKSIH----- 123 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------------~~i~~~~gd~~~~~p----- 123 (244)
.++.+||+||||+|..++.+++..+ .+ ++.+|+ +.+++.|+++ ++++++.+|.++.+.
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~-Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~ 264 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KM-VTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE 264 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SE-EEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CE-EEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhcc
Confidence 3568999999999999999998755 66 999999 9999988752 179999999877532
Q ss_pred -c-ceEEEecccc-c-cCCHH--HHHHHHHHH----HHHcCCCCEEEEec
Q 041308 124 -V-VDAIFMKWVL-T-TWTDD--ECKLIMENY----YKALLAGRKLIACE 163 (244)
Q Consensus 124 -~-~D~v~~~~~l-h-~~~~~--~~~~~l~~~----~~~L~pgG~lii~d 163 (244)
. .|+|++-..- . ...+. ....+++++ .++|+|||.+++.-
T Consensus 265 ~~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs 314 (364)
T 2qfm_A 265 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 314 (364)
T ss_dssp TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEc
Confidence 2 4999976432 1 00110 123556666 99999999999754
No 256
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.71 E-value=2.7e-08 Score=83.08 Aligned_cols=84 Identities=10% Similarity=0.164 Sum_probs=66.7
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc-
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~- 124 (244)
+.+.+++.++ ..+..+|||||||+|.++..+++.. .+ ++++|+ +.+++.++++ ++++++.+|+.+. ++.
T Consensus 38 i~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~~--~~-V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~ 113 (295)
T 3gru_A 38 FVNKAVESAN-LTKDDVVLEIGLGKGILTEELAKNA--KK-VYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKL 113 (295)
T ss_dssp HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGS
T ss_pred HHHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccC
Confidence 4556777776 7778899999999999999999873 46 999999 9999888763 7899999999884 665
Q ss_pred -ceEEEeccccccCCHH
Q 041308 125 -VDAIFMKWVLTTWTDD 140 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~ 140 (244)
.|+|+++...+ ++.+
T Consensus 114 ~fD~Iv~NlPy~-is~p 129 (295)
T 3gru_A 114 DFNKVVANLPYQ-ISSP 129 (295)
T ss_dssp CCSEEEEECCGG-GHHH
T ss_pred CccEEEEeCccc-ccHH
Confidence 49988775543 4443
No 257
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.69 E-value=5.5e-08 Score=85.36 Aligned_cols=90 Identities=8% Similarity=-0.026 Sum_probs=68.8
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCCc-ceEEEeccccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIHV-VDAIFMKWVLT 135 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p~-~D~v~~~~~lh 135 (244)
.+..+|||+|||+|.++..+++.. .+ ++++|. +.+++.|+++ . ++++.+|+.+.++. .|+|++...-.
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~--~~-V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRG--FN-VKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRA 364 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTT
T ss_pred CCCCEEEEeeccchHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCcc
Confidence 456899999999999999999863 36 999999 9999988864 3 89999999876553 69999865433
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.... .+++.+. .|+|||.+++.
T Consensus 365 g~~~----~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 365 GLHP----RLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp CSCH----HHHHHHH-HHCCSEEEEEE
T ss_pred chHH----HHHHHHH-hcCCCcEEEEE
Confidence 2222 3445444 58999998874
No 258
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.68 E-value=2.4e-08 Score=81.64 Aligned_cols=90 Identities=10% Similarity=0.085 Sum_probs=63.1
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-CCc-
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS-IHV- 124 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~-~p~- 124 (244)
+.+.+++.++ ..+..+|||||||+|.++. +. +.+..+ ++++|+ +.|++.++++ ++++++.+|+.+. ++.
T Consensus 9 i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~-v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~ 84 (252)
T 1qyr_A 9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQ-LTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp HHHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSC-EEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHH
T ss_pred HHHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCe-EEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHh
Confidence 3455666665 6777899999999999999 64 556666 999999 9999988764 4899999999774 432
Q ss_pred -----c-eEEEeccccccCCHHHHHHHH
Q 041308 125 -----V-DAIFMKWVLTTWTDDECKLIM 146 (244)
Q Consensus 125 -----~-D~v~~~~~lh~~~~~~~~~~l 146 (244)
. |.|+.+ .-.+++.+-..+++
T Consensus 85 ~~~~~~~~~vvsN-lPY~i~~~il~~ll 111 (252)
T 1qyr_A 85 AEKMGQPLRVFGN-LPYNISTPLMFHLF 111 (252)
T ss_dssp HHHHTSCEEEEEE-CCTTTHHHHHHHHH
T ss_pred hcccCCceEEEEC-CCCCccHHHHHHHH
Confidence 2 445544 44445554333333
No 259
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.67 E-value=4.3e-08 Score=79.98 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=64.4
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCC-CCc--ce
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKS-IHV--VD 126 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~-~p~--~D 126 (244)
.+.+++.++ ..+..+|||||||+|.++..+++. +..+ ++++|+ +.+++.++++ .+++++.+|+.+. ++. .+
T Consensus 20 ~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~-v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 96 (249)
T 3ftd_A 20 LKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKK-LYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKE 96 (249)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSE-EEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSS
T ss_pred HHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCe-EEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCC
Confidence 455666666 667789999999999999999987 3456 999999 9999988865 5789999999875 554 14
Q ss_pred EEEeccccccCCHH
Q 041308 127 AIFMKWVLTTWTDD 140 (244)
Q Consensus 127 ~v~~~~~lh~~~~~ 140 (244)
.+++.+.=.+++.+
T Consensus 97 ~~vv~NlPy~i~~~ 110 (249)
T 3ftd_A 97 LKVVGNLPYNVASL 110 (249)
T ss_dssp EEEEEECCTTTHHH
T ss_pred cEEEEECchhccHH
Confidence 45555555555544
No 260
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.66 E-value=3.2e-07 Score=79.00 Aligned_cols=153 Identities=11% Similarity=0.039 Sum_probs=92.5
Q ss_pred cceEEEEcCCccHHHHHHHHH-----------------cCCCCeEEEeech------------HHHHhCCC----CCCee
Q 041308 66 VKRLVDVGGSAGDCLRIILQK-----------------HCFICEGINFDLP------------EVVAKAPS----IPEVT 112 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~~D~~------------~~i~~a~~----~~~i~ 112 (244)
.-+|+|+||++|.++..+... .|+++ +..-|+| .+.+..++ ..+-.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~-v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~ 131 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQ-IFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSC 131 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEE-EEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceE-EEecCCCccchHHHHhhhhhhHhhhhhhccCCCCce
Confidence 579999999999999887766 35667 8888976 12111111 11223
Q ss_pred EE---eCCCCCC-CCcc--eEEEeccccccCCHHH-------------------------HH------------HHHHHH
Q 041308 113 HI---GGDMFKS-IHVV--DAIFMKWVLTTWTDDE-------------------------CK------------LIMENY 149 (244)
Q Consensus 113 ~~---~gd~~~~-~p~~--D~v~~~~~lh~~~~~~-------------------------~~------------~~l~~~ 149 (244)
|+ .|.|... +|.. |+|+++..||.+++.. +. .+|+..
T Consensus 132 f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 132 LIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 4555554 7764 9999999999876321 21 237777
Q ss_pred HHHcCCCCEEEEecccCCCC--CCchHHhhhhhcccHhhhhh--------hccCceecCHHHHHHHHHhC-CCCeEEEEE
Q 041308 150 YKALLAGRKLIACEPVLPDD--SNESQRTRALLEGDIFVMTI--------YRAKGKHKTEQEFKQLGFST-GFPHLRAFI 218 (244)
Q Consensus 150 ~~~L~pgG~lii~d~~~~~~--~~~~~~~~~~~~~d~~~~~~--------~~~~~~~~t~~e~~~ll~~a-Gf~~~~~~~ 218 (244)
++.|+|||++++.-...+.. ...........+.++....+ ...--..++.+|++++++++ ||++..++.
T Consensus 212 a~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~ 291 (384)
T 2efj_A 212 SEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLET 291 (384)
T ss_dssp HHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEE
T ss_pred HHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEE
Confidence 99999999999876655443 11100011112222111100 00112346899999999998 478877755
Q ss_pred c
Q 041308 219 S 219 (244)
Q Consensus 219 ~ 219 (244)
.
T Consensus 292 ~ 292 (384)
T 2efj_A 292 F 292 (384)
T ss_dssp E
T ss_pred E
Confidence 4
No 261
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.65 E-value=3.6e-08 Score=86.80 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=70.4
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCCC----
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSIH---- 123 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~p---- 123 (244)
.+++.++ ..+..+|||+|||+|.++..+++. ..+ ++++|. +.+++.|+++ .+++|+.+|+.+.++
T Consensus 277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~-V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AAS-VVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 3444444 556789999999999999999987 456 999999 9999988753 589999999987532
Q ss_pred ---cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 124 ---VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 124 ---~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
..|+|++.---... ..+++.+. .++|++.+++
T Consensus 353 ~~~~fD~Vv~dPPr~g~-----~~~~~~l~-~~~p~~ivyv 387 (433)
T 1uwv_A 353 AKNGFDKVLLDPARAGA-----AGVMQQII-KLEPIRIVYV 387 (433)
T ss_dssp GTTCCSEEEECCCTTCC-----HHHHHHHH-HHCCSEEEEE
T ss_pred hcCCCCEEEECCCCccH-----HHHHHHHH-hcCCCeEEEE
Confidence 14999975443222 13444444 3789887776
No 262
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.65 E-value=1.3e-08 Score=94.57 Aligned_cols=98 Identities=13% Similarity=0.100 Sum_probs=74.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCC---C-cceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSI---H-VVDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~---p-~~D~v~~~ 131 (244)
++.+|||+|||||.++..+++... .+ ++++|+ +.+++.++++ ++++++.+|+++.+ . ..|+|++.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~-V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RS-TTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 468999999999999999997543 35 999999 9999988763 37999999998742 2 25999985
Q ss_pred cccc--------cCC-HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLT--------TWT-DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh--------~~~-~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
--.. .+. ......+++++.+.|+|||.|++...
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 4221 111 13356789999999999999997554
No 263
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.65 E-value=2.5e-07 Score=79.10 Aligned_cols=155 Identities=10% Similarity=0.065 Sum_probs=93.0
Q ss_pred CCcceEEEEcCCccHHHHHHHHH----------------cCCCCeEEEeec-hHHHHhCCC-CC------C---eeEEeC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQK----------------HCFICEGINFDL-PEVVAKAPS-IP------E---VTHIGG 116 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~----------------~p~~~~~~~~D~-~~~i~~a~~-~~------~---i~~~~g 116 (244)
+..-+|+|+||++|.++..+... .|+++ +..-|+ .+.....-+ .+ + +.-+.|
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~-v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpg 128 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQ-IFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG 128 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEE-EEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEES
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceE-EEecCCCchHHHHHHHhcchhcccCCCEEEEecch
Confidence 34568999999999877655443 35566 888898 333322211 11 2 233557
Q ss_pred CCCCC-CCcc--eEEEeccccccCCH-------------------------------HHHHHHHHHHHHHcCCCCEEEEe
Q 041308 117 DMFKS-IHVV--DAIFMKWVLTTWTD-------------------------------DECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 117 d~~~~-~p~~--D~v~~~~~lh~~~~-------------------------------~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.|... +|.. |+|+++..||.+++ .+...+|+..++.|+|||++++.
T Consensus 129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 77665 7774 99999999998764 12334689999999999999987
Q ss_pred cccCCCCCC-c-----hHHhhhhhcccHhhhhh--------hccCceecCHHHHHHHHHhCCC-CeEEEEEc
Q 041308 163 EPVLPDDSN-E-----SQRTRALLEGDIFVMTI--------YRAKGKHKTEQEFKQLGFSTGF-PHLRAFIS 219 (244)
Q Consensus 163 d~~~~~~~~-~-----~~~~~~~~~~d~~~~~~--------~~~~~~~~t~~e~~~ll~~aGf-~~~~~~~~ 219 (244)
-...++... . -+......+.++....+ +..--..++.+|++++++++|. ++...+..
T Consensus 209 ~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~ 280 (359)
T 1m6e_X 209 ILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp EEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred EecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 655443310 0 01111112222211110 0111234588999999999955 77666543
No 264
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.63 E-value=4.7e-08 Score=80.64 Aligned_cols=90 Identities=8% Similarity=-0.002 Sum_probs=66.9
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---CCeeEEeCCCCCC-CCc---
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---PEVTHIGGDMFKS-IHV--- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---~~i~~~~gd~~~~-~p~--- 124 (244)
++.+++..+ ..+. +|||||||+|.++..+++.. .+ ++++|+ +.+++.++++ .+++++.+|+++. ++.
T Consensus 36 ~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~-V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~ 110 (271)
T 3fut_A 36 LRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AE-VTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQ 110 (271)
T ss_dssp HHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CC-EEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCT
T ss_pred HHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CE-EEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccC
Confidence 445666666 6667 99999999999999999875 46 999999 9999888753 6899999999874 553
Q ss_pred ceEEEeccccccCCHHHHHHHHHH
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMEN 148 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~ 148 (244)
.|.|+.+.- .+++.+-..+++..
T Consensus 111 ~~~iv~NlP-y~iss~il~~ll~~ 133 (271)
T 3fut_A 111 GSLLVANLP-YHIATPLVTRLLKT 133 (271)
T ss_dssp TEEEEEEEC-SSCCHHHHHHHHHH
T ss_pred ccEEEecCc-ccccHHHHHHHhcC
Confidence 376665544 55676544444443
No 265
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.63 E-value=6.6e-08 Score=80.27 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=74.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------CCeeEEeCCCCCCCCc----ceE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------PEVTHIGGDMFKSIHV----VDA 127 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------~~i~~~~gd~~~~~p~----~D~ 127 (244)
+++.+||-||+|.|..++++++..+..+ ++.+|+ +.+++.+++. +|++++.+|.++-+.. .|+
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~-v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVES-ITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcce-EEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 4568999999999999999997655556 999999 9999988752 7999999999886432 499
Q ss_pred EEeccccccCCHH---HHHHHHHHHHHHcCCCCEEEEe
Q 041308 128 IFMKWVLTTWTDD---ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 128 v~~~~~lh~~~~~---~~~~~l~~~~~~L~pgG~lii~ 162 (244)
|++-..= -.... -...+++.++++|+|||.++..
T Consensus 161 Ii~D~~d-p~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 161 IISDCTD-PIGPGESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EEESCCC-CCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred EEEeCCC-cCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 9865321 11100 0136899999999999999974
No 266
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.58 E-value=3.4e-08 Score=80.86 Aligned_cols=132 Identities=16% Similarity=0.057 Sum_probs=85.5
Q ss_pred CcceEEEEcCCccHHHHHHHHH-------cCC-----CCeEEEeec-h---HHHHhC-----------C-----------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQK-------HCF-----ICEGINFDL-P---EVVAKA-----------P----------- 106 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~-------~p~-----~~~~~~~D~-~---~~i~~a-----------~----------- 106 (244)
+..+|||+|+|+|..+..+++. .|+ ++ ++.++. | +++..+ +
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~-~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLH-FISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEE-EEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeE-EEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 4579999999999999887764 564 56 888987 5 332211 1
Q ss_pred ---------CCCCeeEEeCCCCCC---CC-----cceEEEecccc-ccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 107 ---------SIPEVTHIGGDMFKS---IH-----VVDAIFMKWVL-TTWTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 107 ---------~~~~i~~~~gd~~~~---~p-----~~D~v~~~~~l-h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
...++++..||+.+. ++ ..|+|++--.- ..-++--...+|+.+++.|+|||+|+....
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa---- 214 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS---- 214 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC----
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC----
Confidence 114577889998653 32 24998874211 101110124789999999999999985211
Q ss_pred CCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecCc
Q 041308 169 DSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKSN 231 (244)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~~ 231 (244)
...++..|.++||++.+.........++.+.++
T Consensus 215 ------------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~~ 247 (257)
T 2qy6_A 215 ------------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVME 247 (257)
T ss_dssp ------------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEEC
T ss_pred ------------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEec
Confidence 013567788899998877666555556655543
No 267
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.57 E-value=2.3e-08 Score=82.87 Aligned_cols=67 Identities=10% Similarity=0.168 Sum_probs=56.2
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCC--CCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCF--ICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKS 121 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~ 121 (244)
.+.+++.++ ..+..+|||||||+|.++..+++..+. .+ ++++|+ +.+++.++++ ++++++.+|+.+.
T Consensus 31 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~-V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 31 IDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSP-LHAVELDRDLIGRLEQRFGELLELHAGDALTF 102 (279)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBC-EEEEECCHHHHHHHHHHHGGGEEEEESCGGGC
T ss_pred HHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCe-EEEEECCHHHHHHHHHhcCCCcEEEECChhcC
Confidence 345666665 677789999999999999999998765 67 999999 9999988764 6899999999774
No 268
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.57 E-value=2.3e-07 Score=75.80 Aligned_cols=105 Identities=12% Similarity=0.078 Sum_probs=66.2
Q ss_pred HHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCC-CCCCc--ce
Q 041308 55 SVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMF-KSIHV--VD 126 (244)
Q Consensus 55 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~-~~~p~--~D 126 (244)
++.+... +++..+|||+|||+|.+++.++++.+... ++++|+ -.+....... .++.....++. ..++. .|
T Consensus 65 ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~-v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~D 142 (277)
T 3evf_A 65 WFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSG-VKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCD 142 (277)
T ss_dssp HHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCc-ceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCcc
Confidence 3445543 77788999999999999999887755434 666776 3331111111 13444455442 12333 49
Q ss_pred EEEeccccc---cCCHH-HHHHHHHHHHHHcCCC-CEEEE
Q 041308 127 AIFMKWVLT---TWTDD-ECKLIMENYYKALLAG-RKLIA 161 (244)
Q Consensus 127 ~v~~~~~lh---~~~~~-~~~~~l~~~~~~L~pg-G~lii 161 (244)
+|++....+ ++.|. ....+|+.+.++|+|| |.|++
T Consensus 143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 999876554 12222 2235689999999999 99998
No 269
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.50 E-value=2.4e-08 Score=86.13 Aligned_cols=96 Identities=14% Similarity=0.006 Sum_probs=69.6
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCC---C--
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSI---H-- 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~---p-- 123 (244)
+++..+ .. ..+|||+|||+|.++..+++.. .+ ++++|. +.+++.|+++ ++++++.+|..+.+ +
T Consensus 206 ~~~~~~-~~-~~~vLDl~cG~G~~~l~la~~~--~~-V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~ 280 (369)
T 3bt7_A 206 ALDVTK-GS-KGDLLELYCGNGNFSLALARNF--DR-VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 280 (369)
T ss_dssp HHHHTT-TC-CSEEEEESCTTSHHHHHHGGGS--SE-EEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSC
T ss_pred HHHHhh-cC-CCEEEEccCCCCHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhc
Confidence 444444 33 3789999999999999988743 35 999999 9999888753 58999999986531 1
Q ss_pred --------------cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 --------------VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 --------------~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..|+|++.---. .+.+++.+.|+|+|+++.+.+
T Consensus 281 ~~~~~l~~~~~~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 281 REFNRLQGIDLKSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp CCCTTGGGSCGGGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEES
T ss_pred cccccccccccccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEEC
Confidence 359888643221 234566777889999998765
No 270
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.50 E-value=5.8e-07 Score=76.31 Aligned_cols=144 Identities=11% Similarity=0.112 Sum_probs=103.4
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC---------------------------CCeeEEeCC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI---------------------------PEVTHIGGD 117 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~---------------------------~~i~~~~gd 117 (244)
+...|+.+|||....+..+...+++++ +.-+|.|.+++..++. ++..++..|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~-~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLA-YVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEE-EEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCE-EEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 468999999999999999998888888 8888988887655421 578999999
Q ss_pred CCCC-C--------C--c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHh
Q 041308 118 MFKS-I--------H--V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIF 185 (244)
Q Consensus 118 ~~~~-~--------p--~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~ 185 (244)
+.+. + + . ..++++.-+++.+++++..++++.+.+.. |+|.+++.|.+.+.....+ .... ....+.
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~-fg~~-m~~~l~ 252 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDR-FGAI-MQSNLK 252 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCC-HHHH-HHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcch-HHHH-HHHHhh
Confidence 9873 2 1 1 27899999999999999999999999987 8888888998776332111 1110 000010
Q ss_pred h-hhhhccC-ceecCHHHHHHHHHhCCCC
Q 041308 186 V-MTIYRAK-GKHKTEQEFKQLGFSTGFP 212 (244)
Q Consensus 186 ~-~~~~~~~-~~~~t~~e~~~ll~~aGf~ 212 (244)
. ......+ ....+.++..+.|.++||+
T Consensus 253 ~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 253 ESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred cccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 0 0000111 2345889999999999997
No 271
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.49 E-value=8.3e-08 Score=78.53 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=54.2
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS 121 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~ 121 (244)
++.+++.++ ..+..+|||||||+|.++..++++. .+ ++++|+ +.+++.++++ ++++++.+|+.+.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~-V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~ 87 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DN-LALVEIDRDLVAFLQKKYNQQKNITIYQNDALQF 87 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SE-EEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhC
Confidence 445666665 6777899999999999999999875 46 999999 9999888753 6899999999875
No 272
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.45 E-value=7.1e-08 Score=88.22 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=82.8
Q ss_pred ccccccCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHH----c---------CCCCeEE
Q 041308 28 YSYYGKKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK----H---------CFICEGI 94 (244)
Q Consensus 28 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~---------p~~~~~~ 94 (244)
||...+|+-..+.|++|+... +.+....-.+...|||||||+|-++...++. . ...+ ++
T Consensus 379 Ye~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k-Vy 450 (745)
T 3ua3_A 379 YNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK-LY 450 (745)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE-EE
T ss_pred HHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE-EE
Confidence 667777887778888887642 1121110123468999999999996543222 1 2346 99
Q ss_pred Eeec-hHHHHhCCC------CCCeeEEeCCCCCC-C------Cc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEE
Q 041308 95 NFDL-PEVVAKAPS------IPEVTHIGGDMFKS-I------HV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKL 159 (244)
Q Consensus 95 ~~D~-~~~i~~a~~------~~~i~~~~gd~~~~-~------p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~l 159 (244)
++|. +..+...+. .++|+++.+|+.+- + |+ .|+||+.++=.....+-...+|..+.+.|||||.+
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 9998 644433222 17899999999764 6 44 59999887744433443456778888999999976
Q ss_pred E
Q 041308 160 I 160 (244)
Q Consensus 160 i 160 (244)
+
T Consensus 531 i 531 (745)
T 3ua3_A 531 I 531 (745)
T ss_dssp E
T ss_pred E
Confidence 4
No 273
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.43 E-value=4.5e-07 Score=84.37 Aligned_cols=110 Identities=11% Similarity=-0.007 Sum_probs=78.1
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc------------------------------------------CCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH------------------------------------------CFI 90 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~------------------------------------------p~~ 90 (244)
+..++.... |.+...+||.+||+|.++++.+... +..
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 344555555 7888999999999999999888652 335
Q ss_pred CeEEEeec-hHHHHhCCCC-------CCeeEEeCCCCCC-CC----cceEEEecccccc-CC-HHHHHHHHH---HHHHH
Q 041308 91 CEGINFDL-PEVVAKAPSI-------PEVTHIGGDMFKS-IH----VVDAIFMKWVLTT-WT-DDECKLIME---NYYKA 152 (244)
Q Consensus 91 ~~~~~~D~-~~~i~~a~~~-------~~i~~~~gd~~~~-~p----~~D~v~~~~~lh~-~~-~~~~~~~l~---~~~~~ 152 (244)
+ ++++|+ +.+++.|+.+ +.+++..+|+.+. .| ..|+|+++--... +. .++...+.+ ++.+.
T Consensus 258 ~-i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 258 H-FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp C-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred c-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 7 999999 9999998864 4589999999764 23 3499999855432 22 233444444 44455
Q ss_pred cCCCCEEEEecc
Q 041308 153 LLAGRKLIACEP 164 (244)
Q Consensus 153 L~pgG~lii~d~ 164 (244)
+.|||+++++..
T Consensus 337 ~~~g~~~~ilt~ 348 (703)
T 3v97_A 337 QFGGWNLSLFSA 348 (703)
T ss_dssp HCTTCEEEEEES
T ss_pred hCCCCeEEEEeC
Confidence 568999998743
No 274
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.43 E-value=1.5e-07 Score=78.72 Aligned_cols=79 Identities=22% Similarity=0.198 Sum_probs=63.6
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----CCeeEEeCCCCCC---C
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-----PEVTHIGGDMFKS---I 122 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----~~i~~~~gd~~~~---~ 122 (244)
+.+.+++.++ .++..+|||+|||+|..+..+++++|+.+ ++++|. +.+++.|+++ ++++++.+|+.+. +
T Consensus 14 Ll~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~-VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l 91 (301)
T 1m6y_A 14 MVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCR-IIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 91 (301)
T ss_dssp THHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred HHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence 4556666666 66778999999999999999999988778 999999 9999888753 5899999998542 1
Q ss_pred -----CcceEEEecc
Q 041308 123 -----HVVDAIFMKW 132 (244)
Q Consensus 123 -----p~~D~v~~~~ 132 (244)
...|.|++..
T Consensus 92 ~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 92 KTLGIEKVDGILMDL 106 (301)
T ss_dssp HHTTCSCEEEEEEEC
T ss_pred HhcCCCCCCEEEEcC
Confidence 2358888754
No 275
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=98.42 E-value=5.4e-07 Score=75.74 Aligned_cols=110 Identities=11% Similarity=-0.033 Sum_probs=75.6
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC------CCeeEEeCCCCCCC---C-
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI------PEVTHIGGDMFKSI---H- 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~------~~i~~~~gd~~~~~---p- 123 (244)
++..++ ..++.+|||+|||+|..+..+++.. +..+ ++++|+ +.+++.++++ .+++++.+|+.+.. +
T Consensus 94 ~~~~l~-~~~g~~VLDlcaG~G~kt~~la~~~~~~g~-V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 171 (309)
T 2b9e_A 94 PAMLLD-PPPGSHVIDACAAPGNKTSHLAALLKNQGK-IFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPR 171 (309)
T ss_dssp HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGG
T ss_pred HHHHhC-CCCCCEEEEeCCChhHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccc
Confidence 444455 6677899999999999999999875 4567 999999 8888877753 57999999986542 1
Q ss_pred --cceEEEec------cccccCCH---------H-------HHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 124 --VVDAIFMK------WVLTTWTD---------D-------ECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 124 --~~D~v~~~------~~lh~~~~---------~-------~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
..|.|++. .++..-++ + ...++|+++.+.|+ ||+++...+....
T Consensus 172 ~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~ 239 (309)
T 2b9e_A 172 YHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQ 239 (309)
T ss_dssp GTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCG
T ss_pred cCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCCh
Confidence 24998862 11211111 1 11357888888776 9988877665543
No 276
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.39 E-value=4e-07 Score=74.56 Aligned_cols=71 Identities=10% Similarity=0.100 Sum_probs=55.8
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-h-------HHHHhCCCC-------CCeeEEeCCCCCC---CC-
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-P-------EVVAKAPSI-------PEVTHIGGDMFKS---IH- 123 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~-------~~i~~a~~~-------~~i~~~~gd~~~~---~p- 123 (244)
..+..+|||+|||+|..+..+++. ..+ ++++|+ + .+++.++++ .+++++.+|..+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~-V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~ 157 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLT-VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVK 157 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCC-EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCE-EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhc
Confidence 445689999999999999999986 357 999999 8 888888754 4699999998764 33
Q ss_pred ---cceEEEecccccc
Q 041308 124 ---VVDAIFMKWVLTT 136 (244)
Q Consensus 124 ---~~D~v~~~~~lh~ 136 (244)
..|+|++.-.+++
T Consensus 158 ~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 158 TQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHCCCSEEEECCCC--
T ss_pred cCCCccEEEECCCCCC
Confidence 2599999776655
No 277
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=98.36 E-value=4.5e-07 Score=74.15 Aligned_cols=108 Identities=12% Similarity=0.012 Sum_probs=69.6
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----CCC-eeEEeC-CCCCCCCc-c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----IPE-VTHIGG-DMFKSIHV-V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~~~-i~~~~g-d~~~~~p~-~ 125 (244)
.++.+.+. +++..+|||+|||+|.+++.++++.+... ++++|+ ..+...+.. ..+ +.+... |+....+. +
T Consensus 80 ~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~s-V~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 80 RWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKK-VMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCe-eeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence 44666664 78888999999999999999998766556 788888 443332322 112 333332 33222222 5
Q ss_pred eEEEeccccc----cCCHHHHHHHHHHHHHHcCCC--CEEEEec
Q 041308 126 DAIFMKWVLT----TWTDDECKLIMENYYKALLAG--RKLIACE 163 (244)
Q Consensus 126 D~v~~~~~lh----~~~~~~~~~~l~~~~~~L~pg--G~lii~d 163 (244)
|+|++...-+ ..+......+|+-+.++|+|| |.|++-=
T Consensus 158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 9999876654 111222335688888999999 9999843
No 278
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=98.31 E-value=4.5e-07 Score=81.90 Aligned_cols=109 Identities=10% Similarity=0.009 Sum_probs=78.7
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC------------------CCCeEEEeec-hHHHHhCCCC-----
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC------------------FICEGINFDL-PEVVAKAPSI----- 108 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p------------------~~~~~~~~D~-~~~i~~a~~~----- 108 (244)
++.+++... ..+..+|+|.|||+|.++..+.+... ..+ ++++|+ +.+++.|+.+
T Consensus 158 v~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~-i~GiEid~~~~~lA~~nl~l~g 235 (541)
T 2ar0_A 158 IKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA-FIGLELVPGTRRLALMNCLLHD 235 (541)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTS-EEEEESCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcce-EEEEcCCHHHHHHHHHHHHHhC
Confidence 344555555 45567999999999999988876532 236 999999 8888877642
Q ss_pred -CC-----eeEEeCCCCCC----CCcceEEEeccccccCCH------------HHHHHHHHHHHHHcCCCCEEEEec
Q 041308 109 -PE-----VTHIGGDMFKS----IHVVDAIFMKWVLTTWTD------------DECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 109 -~~-----i~~~~gd~~~~----~p~~D~v~~~~~lh~~~~------------~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.. +++..+|.+.. ....|+|+++--+..... ..-..++.++.+.|+|||+++++-
T Consensus 236 i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 236 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 32 78899998864 123599998765543221 112478999999999999998874
No 279
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=98.27 E-value=4.3e-07 Score=78.46 Aligned_cols=91 Identities=9% Similarity=-0.120 Sum_probs=70.7
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------------------CCeeEEeCCCCCC--
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------------------PEVTHIGGDMFKS-- 121 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------------------~~i~~~~gd~~~~-- 121 (244)
..+|||+|||+|..+..++++.+..+ ++++|+ +..++.++++ .+++++.+|..+.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~-V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEE-VWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSE-EEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 58999999999999999999987778 999999 8888777642 2388999998654
Q ss_pred -CC-cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 122 -IH-VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 122 -~p-~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+ ..|+|++.- .. + ...++..+.+.|+|||.+++.-
T Consensus 127 ~~~~~fD~I~lDP-~~--~---~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG--S---PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-SS--C---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-CC--C---HHHHHHHHHHhcCCCCEEEEEe
Confidence 22 259988543 21 1 1367899999999999887753
No 280
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=98.27 E-value=3e-07 Score=79.66 Aligned_cols=93 Identities=10% Similarity=-0.016 Sum_probs=71.4
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------CC-eeEEeCCCCCCC----C-cceEEEe
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------PE-VTHIGGDMFKSI----H-VVDAIFM 130 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~~-i~~~~gd~~~~~----p-~~D~v~~ 130 (244)
++.+|||++||+|.+++.++++..+...++++|+ +..++.++++ .+ ++++.+|.++.+ + ..|+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4689999999999999999997655323999999 9888888763 34 999999985432 2 2599997
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.- . ... ..++..+.+.|+|||.+++..
T Consensus 132 DP-~-g~~----~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP-F-GTP----VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC-S-SCC----HHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-C-cCH----HHHHHHHHHHhCCCCEEEEEe
Confidence 75 1 111 257889999999999887755
No 281
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=98.13 E-value=9.3e-06 Score=66.85 Aligned_cols=105 Identities=12% Similarity=0.078 Sum_probs=65.6
Q ss_pred HhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC----C-CCeeEEeC-CCCCCCCc-ceE
Q 041308 56 VLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS----I-PEVTHIGG-DMFKSIHV-VDA 127 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~----~-~~i~~~~g-d~~~~~p~-~D~ 127 (244)
+.+. ..+++..+|||+||++|.+++.++++.+-.. ++++|+ ..+...... . +-+.+..+ |++...+. .|+
T Consensus 73 i~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~s-V~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~Dl 150 (300)
T 3eld_A 73 LHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMS-VKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDT 150 (300)
T ss_dssp HHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred HHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCce-eeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCE
Confidence 3344 3366788999999999999999998765445 788888 433222111 1 22334333 44332233 499
Q ss_pred EEeccccc----cCCHHHHHHHHHHHHHHcCCC-CEEEEe
Q 041308 128 IFMKWVLT----TWTDDECKLIMENYYKALLAG-RKLIAC 162 (244)
Q Consensus 128 v~~~~~lh----~~~~~~~~~~l~~~~~~L~pg-G~lii~ 162 (244)
|++...-+ ..+......+|.-+.+.|+|| |.|++-
T Consensus 151 VlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 151 LLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp EEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred EeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 99765444 111112245688888999999 999985
No 282
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=98.09 E-value=1.5e-05 Score=68.08 Aligned_cols=131 Identities=11% Similarity=0.074 Sum_probs=84.9
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCc---ceEEEeccccccCCH
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHV---VDAIFMKWVLTTWTD 139 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~---~D~v~~~~~lh~~~~ 139 (244)
++++.++||+||++|.++..++++. .+ ++++|..+|-......++|++..+|.++..|. .|+|++-.+.+ +
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg--~~-V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p 282 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRN--MW-VYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---P 282 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTT--CE-EEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---H
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCC--CE-EEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---h
Confidence 4678999999999999999999874 57 99999855555555668999999999887443 39999876653 4
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe-EEEEE
Q 041308 140 DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH-LRAFI 218 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~-~~~~~ 218 (244)
.....++.+....+..++.++.+.. +.+. .. +... ...+.+...|+.+||.. +++.+
T Consensus 283 ~~~~~l~~~wl~~~~~~~aI~~lKL--~mk~--~~--------~~l~----------~~~~~i~~~l~~~g~~~~l~akh 340 (375)
T 4auk_A 283 AKVAALMAQWLVNGWCRETIFNLKL--PMKK--RY--------EEVS----------HNLAYIQAQLDEHGINAQIQARQ 340 (375)
T ss_dssp HHHHHHHHHHHHTTSCSEEEEEEEC--CSSS--HH--------HHHH----------HHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHhHHHHHHHHhccccceEEEEEEe--cccc--hH--------HHHH----------HHHHHHHHHHHhcCcchhheehh
Confidence 4444445544444444455554443 2110 00 0000 11456678889999973 34445
Q ss_pred ccc
Q 041308 219 SII 221 (244)
Q Consensus 219 ~~~ 221 (244)
+..
T Consensus 341 L~h 343 (375)
T 4auk_A 341 LYH 343 (375)
T ss_dssp CTT
T ss_pred hcc
Confidence 443
No 283
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=98.05 E-value=1.5e-05 Score=74.19 Aligned_cols=101 Identities=15% Similarity=0.040 Sum_probs=70.1
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcC---CCCeEEEeec-hHHHHhC--CC----------CCCeeEEeCCCCCCC--C-
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHC---FICEGINFDL-PEVVAKA--PS----------IPEVTHIGGDMFKSI--H- 123 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~~D~-~~~i~~a--~~----------~~~i~~~~gd~~~~~--p- 123 (244)
+.+..+|||.|||+|.++..+++..+ ..+ ++++|+ +.+++.| +. .....+...|+++.. +
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~-IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~ 397 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQ-IWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDF 397 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGG-EEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGG
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCe-EEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccccc
Confidence 34568999999999999999998875 346 899999 8887776 21 022355666666531 2
Q ss_pred -cceEEEecccccc-CC-HHH-------------------------HHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 -VVDAIFMKWVLTT-WT-DDE-------------------------CKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 -~~D~v~~~~~lh~-~~-~~~-------------------------~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..|+|+++--.-. .. +.. ...+++++.+.|+|||+++++-+
T Consensus 398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2599998755521 11 111 22468889999999999988653
No 284
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=98.04 E-value=2.4e-06 Score=73.15 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=71.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------------CCeeEEeCCCCCCCC------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------------PEVTHIGGDMFKSIH------ 123 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------------~~i~~~~gd~~~~~p------ 123 (244)
++.+||=||+|.|..++++++. |.-+ ++.+|+ |.+++.+++. +|++++.+|.++.+.
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~-V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKM-VTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSE-EEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCce-eEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 3589999999999999999975 5556 999999 9999988741 568999999865431
Q ss_pred -cceEEEeccccc-------cCCHH-HHHHHHHHHHHHcCCCCEEEEe
Q 041308 124 -VVDAIFMKWVLT-------TWTDD-ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 124 -~~D~v~~~~~lh-------~~~~~-~~~~~l~~~~~~L~pgG~lii~ 162 (244)
..|+|++-..-. ..... -...+++.++++|+|||.++..
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 249998753211 11111 1356789999999999999864
No 285
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=98.01 E-value=1.3e-06 Score=71.49 Aligned_cols=97 Identities=11% Similarity=0.145 Sum_probs=64.5
Q ss_pred HHHhccCCCCCCc--ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHH-------HHhCCC-------C-CCeeEEe
Q 041308 54 TSVLDGYDGFKGV--KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEV-------VAKAPS-------I-PEVTHIG 115 (244)
Q Consensus 54 ~~l~~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~-------i~~a~~-------~-~~i~~~~ 115 (244)
+.+++... .+++ .+|||+|||+|..+..++++. .+ ++++|. +.+ ++.++. . .+++++.
T Consensus 76 e~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~g--~~-V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~ 151 (258)
T 2oyr_A 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASVG--CR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (258)
T ss_dssp SHHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHHT--CC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred HHHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence 34555554 5566 899999999999999999883 47 999999 754 333321 1 4799999
Q ss_pred CCCCCC---CCc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCC
Q 041308 116 GDMFKS---IHV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGR 157 (244)
Q Consensus 116 gd~~~~---~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG 157 (244)
+|..+. ++. .|+|++.-.+++-. +. .++++..+.|++.+
T Consensus 152 ~D~~~~L~~~~~~fDvV~lDP~y~~~~-~s--aavkk~~~~lr~l~ 194 (258)
T 2oyr_A 152 ASSLTALTDITPRPQVVYLDPMFPHKQ-KS--ALVKKEMRVFQSLV 194 (258)
T ss_dssp SCHHHHSTTCSSCCSEEEECCCCCCCC-C-------HHHHHHHHHS
T ss_pred CCHHHHHHhCcccCCEEEEcCCCCCcc-cc--hHHHHHHHHHHHhh
Confidence 998653 333 59999988776532 21 44555556665543
No 286
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=98.00 E-value=1.2e-06 Score=79.04 Aligned_cols=108 Identities=12% Similarity=-0.009 Sum_probs=74.1
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC---------------CCCeEEEeec-hHHHHhCCCC-------C
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC---------------FICEGINFDL-PEVVAKAPSI-------P 109 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p---------------~~~~~~~~D~-~~~i~~a~~~-------~ 109 (244)
++.+++.+. ..+ .+|||.+||+|.++..+.+... ..+ +.++|+ +.++..|+.+ .
T Consensus 234 v~lmv~ll~-p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~-i~G~Eid~~~~~lA~~Nl~l~gi~~ 310 (544)
T 3khk_A 234 VTLIVEMLE-PYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQIS-VYGQESNPTTWKLAAMNMVIRGIDF 310 (544)
T ss_dssp HHHHHHHHC-CCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEE-EEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHh-cCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhce-EEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 455555555 333 4999999999999888765432 456 899999 8888877742 3
Q ss_pred CeeEEeCCCCCC--CCc--ceEEEecccccc--CCH-----------------------H--HHHHHHHHHHHHcCCCCE
Q 041308 110 EVTHIGGDMFKS--IHV--VDAIFMKWVLTT--WTD-----------------------D--ECKLIMENYYKALLAGRK 158 (244)
Q Consensus 110 ~i~~~~gd~~~~--~p~--~D~v~~~~~lh~--~~~-----------------------~--~~~~~l~~~~~~L~pgG~ 158 (244)
++.+..+|.+.. .+. .|+|+++--+.. +.. . .-..+++++.+.|+|||+
T Consensus 311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 390 (544)
T 3khk_A 311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS 390 (544)
T ss_dssp BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence 455578887764 332 599998744432 111 0 012589999999999999
Q ss_pred EEEec
Q 041308 159 LIACE 163 (244)
Q Consensus 159 lii~d 163 (244)
++++-
T Consensus 391 ~aiVl 395 (544)
T 3khk_A 391 MALLL 395 (544)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88764
No 287
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=97.89 E-value=0.00025 Score=59.94 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=103.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeechHHHHhCCC-----------------------------CCCeeEE
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDLPEVVAKAPS-----------------------------IPEVTHI 114 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~~~~i~~a~~-----------------------------~~~i~~~ 114 (244)
+...|+-+|||.-.....+.... ++++ +.-+|.|++++.-++ .++..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~-~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSK-YFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSE-EEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCe-EEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 45799999999999998888753 5677 888898888764321 2678899
Q ss_pred eCCCCCC--C---------Cc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhc
Q 041308 115 GGDMFKS--I---------HV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLE 181 (244)
Q Consensus 115 ~gd~~~~--~---------p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~ 181 (244)
..|+.+. + .. .-++++.-++..++++++..+++.+.+.. |+|.+++.|...+++ + ..+. ..
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d---~-fg~~-M~ 242 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGD---R-FGQI-MI 242 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTS---H-HHHH-HH
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCC---H-HHHH-HH
Confidence 9999763 2 11 26888999999999999999999999877 567777788875543 1 1100 00
Q ss_pred ccHhhhhhhccC-ceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 182 GDIFVMTIYRAK-GKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 182 ~d~~~~~~~~~~-~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
..+........+ ....+.++..++|.++||+.+++.++.
T Consensus 243 ~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~~ 282 (334)
T 3iei_A 243 ENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMM 282 (334)
T ss_dssp HHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEHH
T ss_pred HHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecHH
Confidence 001000000011 133578999999999999998876653
No 288
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.89 E-value=4.6e-05 Score=61.47 Aligned_cols=107 Identities=12% Similarity=-0.012 Sum_probs=63.7
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHH--cCCCC-eEEEeechHHHHhCCCCCCe---eEEeC-CCCCCCCc-c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQK--HCFIC-EGINFDLPEVVAKAPSIPEV---THIGG-DMFKSIHV-V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~-~~~~~D~~~~i~~a~~~~~i---~~~~g-d~~~~~p~-~ 125 (244)
.++-+.+ -+++..+|||+||++|.+++.++++ ...++ +++++|+ .+.......+.+ .+..+ |+++.-+. .
T Consensus 63 ~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~ 140 (269)
T 2px2_A 63 RWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPSEIS 140 (269)
T ss_dssp HHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCCCCC
Confidence 4455665 4889999999999999999999986 21111 1344442 111111111344 55557 99875443 5
Q ss_pred eEEEecccc--ccCC-HHH-HHHHHHHHHHHcCCCC-EEEEe
Q 041308 126 DAIFMKWVL--TTWT-DDE-CKLIMENYYKALLAGR-KLIAC 162 (244)
Q Consensus 126 D~v~~~~~l--h~~~-~~~-~~~~l~~~~~~L~pgG-~lii~ 162 (244)
|+|++-..= -+.. |.. ...+|.=+.+.|+||| .|++-
T Consensus 141 DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK 182 (269)
T 2px2_A 141 DTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK 182 (269)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence 999865321 1111 211 2235666778999999 88873
No 289
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.87 E-value=1.7e-05 Score=66.61 Aligned_cols=144 Identities=10% Similarity=-0.025 Sum_probs=94.3
Q ss_pred CcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeechHHHHhCCC---------CCCeeEEeCCCCCCCCc----------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDLPEVVAKAPS---------IPEVTHIGGDMFKSIHV---------- 124 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~~~~i~~a~~---------~~~i~~~~gd~~~~~p~---------- 124 (244)
+...||++|||--..+..+.. | +.+ +.-+|.|.+++..++ .++..++..|+.+.+..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~--~~~~~-v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW--PTGTT-VYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS 178 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC--CTTCE-EEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred CCCeEEEeCCCCCchhhhccC--CCCcE-EEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence 446799999998888666542 4 467 888999988876653 26788999999864211
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcc-cHhhhhh-----hccCcee-
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEG-DIFVMTI-----YRAKGKH- 196 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~-d~~~~~~-----~~~~~~~- 196 (244)
.-++++..++|++++++...+++.+.+.+.||+.+++ |...++.. .......... ......+ ....-..
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 255 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGD--EWREQMQLRFRRVSDALGFEQAVDVQELIYH 255 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCS--HHHHHHHHHHHHHHC-----------CCTTC
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCc--chhHHHHHHHHHHHHHcCCcCCCCccccccC
Confidence 2578899999999999999999999999999888776 44333221 0000000000 0000000 0001111
Q ss_pred cC-HHHHHHHHHhCCCCeE
Q 041308 197 KT-EQEFKQLGFSTGFPHL 214 (244)
Q Consensus 197 ~t-~~e~~~ll~~aGf~~~ 214 (244)
.+ .++..++|.+.||+.+
T Consensus 256 ~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 256 DENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp CTTCCCHHHHHTTTTEEEE
T ss_pred CCChHHHHHHHHHCcCccc
Confidence 25 6789999999999988
No 290
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.82 E-value=0.00012 Score=60.15 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=69.7
Q ss_pred HHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHh---CCCC--CCeeEEeC-CCCCCCCc-c
Q 041308 54 TSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAK---APSI--PEVTHIGG-DMFKSIHV-V 125 (244)
Q Consensus 54 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~---a~~~--~~i~~~~g-d~~~~~p~-~ 125 (244)
..+.+.+. +++..+|||+||++|.++..++.+..--+ +.++|+ ..--+. .++. .-|.+..+ |++...|. .
T Consensus 84 ~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~-V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 84 RWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQE-VRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEE-EEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCE-EEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 44666665 77888999999999999998887754445 999998 431110 0111 44888887 87554333 5
Q ss_pred eEEEeccccccCCHH-----HHHHHHHHHHHHcCCC-CEEEE
Q 041308 126 DAIFMKWVLTTWTDD-----ECKLIMENYYKALLAG-RKLIA 161 (244)
Q Consensus 126 D~v~~~~~lh~~~~~-----~~~~~l~~~~~~L~pg-G~lii 161 (244)
|+|++--. .--+.+ ...++|.-+.+.|++| |-++|
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 98886644 322221 2234677778899998 88887
No 291
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.81 E-value=0.00012 Score=58.20 Aligned_cols=106 Identities=9% Similarity=0.025 Sum_probs=70.3
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHh---CCC--CCCeeEEeC-CCCCCCCc-
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAK---APS--IPEVTHIGG-DMFKSIHV- 124 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~---a~~--~~~i~~~~g-d~~~~~p~- 124 (244)
..++.+.+. +++..+|||+||++|.+++.++.+...-+ +.++|+ +.-.+. .+. ...++|..+ |++.-.|.
T Consensus 67 L~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~-V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~ 144 (267)
T 3p8z_A 67 LQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTE-VRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEK 144 (267)
T ss_dssp HHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEE-EEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCE-EEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcc
Confidence 345666774 88888999999999999998887765446 999998 322111 011 177999999 87544333
Q ss_pred ceEEEeccccccCC---HH-HHHHHHHHHHHHcCCCCEEEE
Q 041308 125 VDAIFMKWVLTTWT---DD-ECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 125 ~D~v~~~~~lh~~~---~~-~~~~~l~~~~~~L~pgG~lii 161 (244)
.|.|+|--.=-.-+ +. ...++|.-+.+.|++ |-++|
T Consensus 145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence 59888653321111 11 223467777788999 78877
No 292
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.78 E-value=4.1e-05 Score=69.04 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=71.7
Q ss_pred CcceEEEEcCCccHHHHHHHHHcC---CCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCC-CC---c--ce
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHC---FICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKS-IH---V--VD 126 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~-~p---~--~D 126 (244)
+..+|+|.+||+|.++..+.+... ..+ +.++|+ +.+...|+.+ +++.+..+|.+.. +| . .|
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~-i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVV-YFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCce-EEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 457999999999999999988743 456 999999 8888777642 4678999998865 33 2 49
Q ss_pred EEEeccccc-cC------------------C---HHHHHHHHHHHHHHcC-CCCEEEEec
Q 041308 127 AIFMKWVLT-TW------------------T---DDECKLIMENYYKALL-AGRKLIACE 163 (244)
Q Consensus 127 ~v~~~~~lh-~~------------------~---~~~~~~~l~~~~~~L~-pgG~lii~d 163 (244)
+|+++--+. .+ + ..+ ..++.++.+.|+ |||++.++-
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEE
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEe
Confidence 999763321 11 1 001 258999999999 999998764
No 293
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.76 E-value=9.8e-06 Score=70.40 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=52.8
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--------CCeeEEeCCCCCCCC-----cceEEE
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--------PEVTHIGGDMFKSIH-----VVDAIF 129 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--------~~i~~~~gd~~~~~p-----~~D~v~ 129 (244)
+++.+|||+|||+|..+..+++.. .+ ++++|. +.+++.++.+ .+++++.+|+.+.++ ..|+|+
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~g--~~-V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~ 168 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSKA--SQ-GIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY 168 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTTC--SE-EEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhcC--CE-EEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence 346899999999999999998764 46 999999 9999888753 469999999987532 249999
Q ss_pred ec
Q 041308 130 MK 131 (244)
Q Consensus 130 ~~ 131 (244)
+.
T Consensus 169 lD 170 (410)
T 3ll7_A 169 VD 170 (410)
T ss_dssp EC
T ss_pred EC
Confidence 74
No 294
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.72 E-value=1.1e-05 Score=84.14 Aligned_cols=142 Identities=13% Similarity=0.007 Sum_probs=67.1
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCC-----CCeEEEeec-hHHHHhCCCC-C--CeeEEeCCCCCC---CCc-ceEEEec
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCF-----ICEGINFDL-PEVVAKAPSI-P--EVTHIGGDMFKS---IHV-VDAIFMK 131 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~~D~-~~~i~~a~~~-~--~i~~~~gd~~~~---~p~-~D~v~~~ 131 (244)
+..+||+||.|+|..+..+++.... .+ .+..|. +...+.+++. . .++...-|..++ .+. .|+|+..
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~-yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLD-YTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEE-EEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccce-EEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence 4579999999999887776665432 24 677898 7777777764 1 222221233222 122 4999999
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGF 211 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf 211 (244)
+++|..++. ...|+++++.|||||++++.+...... ......+.... . ...+...+.++|.++|.++||
T Consensus 1319 ~vl~~t~~~--~~~l~~~~~lL~p~G~l~~~e~~~~~~-----~g~~~~~~~~~--~--r~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A 1319 CALATLGDP--AVAVGNMAATLKEGGFLLLHTLLAGHP-----LGEMVGFLTSP--E--QGGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp CC----------------------CCEEEEEEC-----------------------------------CTTTTSSTTTTE
T ss_pred ccccccccH--HHHHHHHHHhcCCCcEEEEEecccccc-----ccccccccccc--c--ccCCcccCHHHHHHHHHhCCC
Confidence 999865543 478999999999999999987542110 00000000000 0 011233567789999999999
Q ss_pred CeEEEEE
Q 041308 212 PHLRAFI 218 (244)
Q Consensus 212 ~~~~~~~ 218 (244)
+.+....
T Consensus 1388 ~~~~~~~ 1394 (2512)
T 2vz8_A 1388 HLVALKR 1394 (2512)
T ss_dssp EEEEEEE
T ss_pred ceeeecc
Confidence 9877643
No 295
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.67 E-value=6.2e-05 Score=55.55 Aligned_cols=83 Identities=17% Similarity=0.086 Sum_probs=57.5
Q ss_pred CCcceEEEEcCCcc-HHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCC----cceEEEeccccccC
Q 041308 64 KGVKRLVDVGGSAG-DCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIH----VVDAIFMKWVLTTW 137 (244)
Q Consensus 64 ~~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p----~~D~v~~~~~lh~~ 137 (244)
.+..++||||||.| ..|..|++. .+.. ++++|+ |..++ ++..|+|++.. .+|+|...+-
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~-V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsirP---- 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVD-LVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIRP---- 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCE-EEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEESC----
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCe-EEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcCC----
Confidence 44579999999999 588888864 3567 999998 76554 89999999844 4599965432
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 138 TDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+.+...-+.++++.. |.-++|.-.
T Consensus 99 -P~El~~~i~~lA~~v--~adliI~pL 122 (153)
T 2k4m_A 99 -PAEIHSSLMRVADAV--GARLIIKPL 122 (153)
T ss_dssp -CTTTHHHHHHHHHHH--TCEEEEECB
T ss_pred -CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 233344455565533 666776544
No 296
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.60 E-value=5.1e-05 Score=62.30 Aligned_cols=78 Identities=26% Similarity=0.271 Sum_probs=61.3
Q ss_pred cchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCC---CC-
Q 041308 51 PFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKS---IH- 123 (244)
Q Consensus 51 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~---~p- 123 (244)
-+.+++++.+. .++...+||++||.|..+..++++ +.+ ++++|. |.+++.+++. +|++++.+|+.+. +.
T Consensus 9 VLl~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~-VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~ 84 (285)
T 1wg8_A 9 VLYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGR-VIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAA 84 (285)
T ss_dssp TTHHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHH
T ss_pred HHHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCE-EEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHH
Confidence 34677888887 778899999999999999999998 668 999999 9898776532 6899999998543 21
Q ss_pred ----cceEEEecc
Q 041308 124 ----VVDAIFMKW 132 (244)
Q Consensus 124 ----~~D~v~~~~ 132 (244)
..|.|++..
T Consensus 85 ~g~~~vDgIL~DL 97 (285)
T 1wg8_A 85 LGVERVDGILADL 97 (285)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCcCEEEeCC
Confidence 248887653
No 297
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.58 E-value=0.0002 Score=56.16 Aligned_cols=89 Identities=7% Similarity=-0.058 Sum_probs=61.7
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC---------CCCeeEEeCCCCCC------------
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS---------IPEVTHIGGDMFKS------------ 121 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~---------~~~i~~~~gd~~~~------------ 121 (244)
.+..+|||+||| ..+..+++ .++.+ ++.+|. +...+.+++ .++|+++.||..+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~-VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKH-VTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCE-EEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 346899999984 55666665 45667 999998 888777764 24799999996542
Q ss_pred ------------CC---cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 122 ------------IH---VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 122 ------------~p---~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.+ ..|+|++---.. ...+..+.+.|+|||.+++ |.
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-------~~~~~~~l~~l~~GG~Iv~-DN 154 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRFR-------VGCALATAFSITRPVTLLF-DD 154 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSSSH-------HHHHHHHHHHCSSCEEEEE-TT
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCCCc-------hhHHHHHHHhcCCCeEEEE-eC
Confidence 11 249998775311 2456667799999998854 44
No 298
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.56 E-value=0.00096 Score=61.96 Aligned_cols=148 Identities=15% Similarity=0.075 Sum_probs=102.2
Q ss_pred CcceEEEEcCCccHHHHHHHHHcC--------CCCeEEEeechHHHHhCCCC----------------------------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHC--------FICEGINFDLPEVVAKAPSI---------------------------- 108 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~~D~~~~i~~a~~~---------------------------- 108 (244)
+...|+-+|||--.....+....+ +++ +.-+|.|++++.-++.
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~-~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVS-FIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEE-EEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCE-EEECccHHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 467999999999999999987654 556 7778888777543320
Q ss_pred --CCeeEEeCCCCCC--C----------Cc--ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCc
Q 041308 109 --PEVTHIGGDMFKS--I----------HV--VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNE 172 (244)
Q Consensus 109 --~~i~~~~gd~~~~--~----------p~--~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~ 172 (244)
++..++..|+.+. + .. .-++++.-+|..++++++.++|+.+.+ + |++.+++.|...+.....
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d 263 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFE 263 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTS
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCC
Confidence 3789999999873 1 21 257888899999999999999999985 4 788888889876643222
Q ss_pred hHHhhhhhcccHhhhhh--hc-cCceecCHHHHHHHHHhCCCCeEEEEEc
Q 041308 173 SQRTRALLEGDIFVMTI--YR-AKGKHKTEQEFKQLGFSTGFPHLRAFIS 219 (244)
Q Consensus 173 ~~~~~~~~~~d~~~~~~--~~-~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 219 (244)
+ ..+ .+-.+.... .. ......+.++..+.|.++||+.+...++
T Consensus 264 ~-f~~---~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 264 P-FSK---QMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp H-HHH---HHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred h-HHH---HHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 2 111 111111000 00 0123447899999999999998776654
No 299
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=97.40 E-value=0.00049 Score=56.77 Aligned_cols=94 Identities=14% Similarity=0.038 Sum_probs=66.3
Q ss_pred CcceEEEEcCCccHHHHHHHHHc-----CCCCeEEEeec-hHH--------------------------HHhCCC-----
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKH-----CFICEGINFDL-PEV--------------------------VAKAPS----- 107 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~~D~-~~~--------------------------i~~a~~----- 107 (244)
.+.+|||+|+..|..+..+++.. ++.+ ++++|. ..+ ++.+++
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~k-I~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRT-VWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCC-EEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCE-EEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 35799999999999998887654 4667 999994 211 122221
Q ss_pred ---CCCeeEEeCCCCCCCCc-----ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 108 ---IPEVTHIGGDMFKSIHV-----VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 108 ---~~~i~~~~gd~~~~~p~-----~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.++|+++.||+.+.+|. .|+|.+-.-. .+.....|..+...|+|||.+++=|
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~----y~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL----YESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS----HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc----cccHHHHHHHHHhhcCCCEEEEEcC
Confidence 26899999999765442 3777766432 2334678999999999999888633
No 300
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=97.39 E-value=0.00035 Score=58.15 Aligned_cols=130 Identities=17% Similarity=0.077 Sum_probs=75.8
Q ss_pred cceEEEEcCCccHHHHHHH----HHcCCCC-eEEEeechHHHHhCCC--------------------CCC--eeEEeCCC
Q 041308 66 VKRLVDVGGSAGDCLRIIL----QKHCFIC-EGINFDLPEVVAKAPS--------------------IPE--VTHIGGDM 118 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~----~~~p~~~-~~~~~D~~~~i~~a~~--------------------~~~--i~~~~gd~ 118 (244)
.-+|||+|=|||.++...+ +..|..+ .++.++. ..++.... ..+ +++..||+
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 4689999999999765433 4467655 0344442 11111000 023 35667887
Q ss_pred CCCCC---c--ceEEEeccccccCCHH-HHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhcc
Q 041308 119 FKSIH---V--VDAIFMKWVLTTWTDD-ECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA 192 (244)
Q Consensus 119 ~~~~p---~--~D~v~~~~~lh~~~~~-~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 192 (244)
.+.++ . +|++++--+--.-.++ -...+|+++++.++|||.++-..
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt----------------------------- 226 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS----------------------------- 226 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-----------------------------
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-----------------------------
Confidence 55433 2 3887765322111111 12468899999999999887411
Q ss_pred CceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeecC
Q 041308 193 KGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSKS 230 (244)
Q Consensus 193 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~ 230 (244)
....++.-|++|||++.++.-.+.-.-++++..
T Consensus 227 -----aag~VRR~L~~aGF~V~k~~G~g~KReml~A~~ 259 (308)
T 3vyw_A 227 -----SSLSVRKSLLTLGFKVGSSREIGRKRKGTVASL 259 (308)
T ss_dssp -----CCHHHHHHHHHTTCEEEEEECC---CEEEEEES
T ss_pred -----CcHHHHHHHHHCCCEEEecCCCCCCCceeEEec
Confidence 123568889999999999877766566666654
No 301
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=97.37 E-value=0.0002 Score=61.20 Aligned_cols=108 Identities=17% Similarity=0.092 Sum_probs=75.2
Q ss_pred CCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC------------CCCeeEEeCCCCCC---CCc-c
Q 041308 63 FKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS------------IPEVTHIGGDMFKS---IHV-V 125 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~------------~~~i~~~~gd~~~~---~p~-~ 125 (244)
..++.+|||+++|.|.=+.++++..+..+ ++++|. +.-+...++ ..++.+...|.... .+. +
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~-l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRN-LAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEE-EEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCc-EEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence 56788999999999999999998776666 899997 654433322 14678888887543 233 5
Q ss_pred eEEEeccc---------------cccCCHHH-------HHHHHHHHHHHcCCCCEEEEecccCCCCCC
Q 041308 126 DAIFMKWV---------------LTTWTDDE-------CKLIMENYYKALLAGRKLIACEPVLPDDSN 171 (244)
Q Consensus 126 D~v~~~~~---------------lh~~~~~~-------~~~~l~~~~~~L~pgG~lii~d~~~~~~~~ 171 (244)
|.|++--- ...+..++ ..++|+++.+.|||||+|+-..+.+....+
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~EN 292 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQN 292 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTT
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhC
Confidence 88884211 11122221 246899999999999999988887765533
No 302
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=97.27 E-value=0.00049 Score=57.86 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=58.8
Q ss_pred cccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCC
Q 041308 49 FVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFK 120 (244)
Q Consensus 49 ~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~ 120 (244)
..-+.+++++.+. .+++..++|..+|.|..+..++++. |+.+ ++++|. |.+++.++.. +|++++.+++.+
T Consensus 42 ~pVLl~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~Gr-Vig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 42 TTVLLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGR-LLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp CCTTTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred ccccHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 3345788889887 7888999999999999999999885 7788 999999 9999887532 688999988854
No 303
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=96.88 E-value=0.0027 Score=57.10 Aligned_cols=110 Identities=9% Similarity=-0.025 Sum_probs=72.6
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHc-------------CCCCeEEEeec-hHHHHhCCCC------CCe
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKH-------------CFICEGINFDL-PEVVAKAPSI------PEV 111 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~~D~-~~~i~~a~~~------~~i 111 (244)
+++.+++.++ .....+|+|-+||||.++..+.+.. .... +.|+|+ +.+...|+-+ +.-
T Consensus 205 Vv~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~-i~G~E~~~~~~~la~mNl~lhg~~~~ 282 (530)
T 3ufb_A 205 VVRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESS-IFGGEAKSLPYLLVQMNLLLHGLEYP 282 (530)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCC-EEEECCSHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhh-hhhhhccHHHHHHHHHHHHhcCCccc
Confidence 3455666665 4556799999999999988776542 1345 889998 7777666632 344
Q ss_pred eEEeCCCCCC-C----C--cceEEEecccccc-CC-------------HHHHHHHHHHHHHHcC-------CCCEEEEec
Q 041308 112 THIGGDMFKS-I----H--VVDAIFMKWVLTT-WT-------------DDECKLIMENYYKALL-------AGRKLIACE 163 (244)
Q Consensus 112 ~~~~gd~~~~-~----p--~~D~v~~~~~lh~-~~-------------~~~~~~~l~~~~~~L~-------pgG~lii~d 163 (244)
++..+|.+.. . + ..|+|+.+--+.. +. .+....++.++.+.|| |||++.++-
T Consensus 283 ~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 283 RIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp EEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred cccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 5677887653 1 1 2499998765521 11 1112356888888887 699988864
No 304
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=96.80 E-value=0.00097 Score=56.75 Aligned_cols=55 Identities=11% Similarity=0.022 Sum_probs=42.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC---CCCCeeEEeCCCCC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAP---SIPEVTHIGGDMFK 120 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~---~~~~i~~~~gd~~~ 120 (244)
+...|||||.|.|.++..|+++...-+ ++++++ +..++..+ ..++++++.+|+++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~-vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQ-YSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSE-EEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCE-EEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 358999999999999999998753345 888887 66655443 24799999999964
No 305
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=96.63 E-value=0.0024 Score=52.54 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=59.3
Q ss_pred CCCcceEEEEcC------CccHHHHHHHHHcCC-CCeEEEeechHHHHhCCCCCCeeEEeCCCCCC-C-CcceEEEecc-
Q 041308 63 FKGVKRLVDVGG------SAGDCLRIILQKHCF-ICEGINFDLPEVVAKAPSIPEVTHIGGDMFKS-I-HVVDAIFMKW- 132 (244)
Q Consensus 63 ~~~~~~vLDvG~------G~G~~~~~l~~~~p~-~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~-~-p~~D~v~~~~- 132 (244)
.+.+.+|||+|+ .+|.+ .+.+..|. .. ++.+|+.++... .. .++.||+.+. . ...|+|++-.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~-VVavDL~~~~sd----a~-~~IqGD~~~~~~~~k~DLVISDMA 178 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTL-LVDSDLNDFVSD----AD-STLIGDCATVHTANKWDLIISDMY 178 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCE-EEEEESSCCBCS----SS-EEEESCGGGEEESSCEEEEEECCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcE-EEEeeCcccccC----CC-eEEEccccccccCCCCCEEEecCC
Confidence 456789999996 67874 33344676 57 999999444321 22 4489998654 2 2249998532
Q ss_pred --ccccCC------HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 133 --VLTTWT------DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 133 --~lh~~~------~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.-.+.. ..-+..++.=+.+.|+|||.|++-
T Consensus 179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 222211 113556677788899999999984
No 306
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=96.43 E-value=0.0016 Score=54.10 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=39.8
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~ 107 (244)
++.+++.+. .++..|||++||+|.++..+.+.. .+ ++++|+ +.+++.+++
T Consensus 225 ~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g--~~-~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 225 AERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWG--RR-ALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTT--CE-EEEEESCHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--Ce-EEEEeCCHHHHHHHHH
Confidence 455555543 456899999999999999988764 45 999999 999988875
No 307
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=95.08 E-value=0.021 Score=46.26 Aligned_cols=129 Identities=12% Similarity=0.029 Sum_probs=81.7
Q ss_pred cceEEEEcCCccHHHHHHHHH-------cCCCCeEEEeec-hHHHH----------------------------------
Q 041308 66 VKRLVDVGGSAGDCLRIILQK-------HCFICEGINFDL-PEVVA---------------------------------- 103 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~~D~-~~~i~---------------------------------- 103 (244)
...|+|+|+-.|..+..+++. .++-+ +.++|. ..+-+
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~-v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRR-IVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCC-EEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCE-EEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 479999999999988886642 34456 999992 11110
Q ss_pred hCCC----CCCeeEEeCCCCCCCCc---------ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCC
Q 041308 104 KAPS----IPEVTHIGGDMFKSIHV---------VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVLPDDS 170 (244)
Q Consensus 104 ~a~~----~~~i~~~~gd~~~~~p~---------~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~ 170 (244)
..+. .++|+++.|++.+.+|. .|++.+-.- . .+.....+..+...|+|||.+++=|...+.-
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D---~-Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w- 223 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD---L-YEPTKAVLEAIRPYLTKGSIVAFDELDNPKW- 223 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC---C-HHHHHHHHHHHGGGEEEEEEEEESSTTCTTC-
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc---c-cchHHHHHHHHHHHhCCCcEEEEcCCCCCCC-
Confidence 0011 27899999999765432 266665542 1 2335678999999999999999755321110
Q ss_pred CchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEccceeEE
Q 041308 171 NESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISIIFTLF 225 (244)
Q Consensus 171 ~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~ 225 (244)
+ | ..+.|.+.+.+.|.++...-..+.+..+
T Consensus 224 --~--------------------G---~~~A~~ef~~~~~~~i~~~p~~~~~~y~ 253 (257)
T 3tos_A 224 --P--------------------G---ENIAMRKVLGLDHAPLRLLPGRPAPAYL 253 (257)
T ss_dssp --T--------------------H---HHHHHHHHTCTTSSCCEECTTCSCCEEE
T ss_pred --h--------------------H---HHHHHHHHHhhCCCeEEEccCCCCCEEE
Confidence 0 0 1456788888888877766444444333
No 308
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=93.75 E-value=0.21 Score=41.57 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=57.9
Q ss_pred ceEEEEcCC--ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC-CCCcceEEEeccccccCCHHHH
Q 041308 67 KRLVDVGGS--AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK-SIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 67 ~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~-~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
.+|.=||+| .+.++..+.+.....+ ++++|. +..++.+++..-+.-...|..+ ....+|+|++. .++...
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~-V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVila-----vp~~~~ 107 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGK-IYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTF 107 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSE-EEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC-----SCGGGH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEe-----CCHHHH
Confidence 689999987 3445666666554336 899998 7776666543332223344433 34446998876 344556
Q ss_pred HHHHHHHHHHcCCCCEEEEe
Q 041308 143 KLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii~ 162 (244)
..+++++...++||..++-+
T Consensus 108 ~~vl~~l~~~l~~~~iv~d~ 127 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVTDQ 127 (314)
T ss_dssp HHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHhhccCCCcEEEEC
Confidence 67889999999998765543
No 309
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=93.71 E-value=0.041 Score=44.49 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=39.5
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~ 107 (244)
+++.+++.+. .++..|||..||+|.++.+..+.. -+ ++++|+ +..++.+++
T Consensus 201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~g--r~-~ig~e~~~~~~~~~~~ 252 (260)
T 1g60_A 201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKLG--RN-FIGCDMNAEYVNQANF 252 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHTT--CE-EEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--Ce-EEEEeCCHHHHHHHHH
Confidence 4555666543 456899999999999999988764 45 999999 888877654
No 310
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=93.39 E-value=0.032 Score=51.65 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=71.5
Q ss_pred CcceEEEEcCCccHHHHHHHHHc-------CC-----CCeEEEeec-h---HHHHh-CCC--------------------
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKH-------CF-----ICEGINFDL-P---EVVAK-APS-------------------- 107 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~-------p~-----~~~~~~~D~-~---~~i~~-a~~-------------------- 107 (244)
+.-+|+|+|-|+|.+...+.+.. |. ++ ++.++. | ..+.. ...
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~-~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLH-YISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEE-EEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEE-EEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 34699999999999988877653 22 55 677774 3 11111 000
Q ss_pred ----------CCCeeEEeCCCCCCCC--------cceEEEeccccccCCH-HHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 108 ----------IPEVTHIGGDMFKSIH--------VVDAIFMKWVLTTWTD-DECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 108 ----------~~~i~~~~gd~~~~~p--------~~D~v~~~~~lh~~~~-~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
.-++++..||..+.++ .+|++++--+--.-.+ --...+++.+.+.++|||.+.-.-.
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~---- 212 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTA---- 212 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCC----
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccC----
Confidence 0145667788755322 1487776432111000 0014678888888899887763110
Q ss_pred CCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 169 DSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...+++.+.++||.+.+.....
T Consensus 213 ------------------------------~~~vr~~l~~aGf~~~~~~~~~ 234 (689)
T 3pvc_A 213 ------------------------------AGFVRRGLQQAGFNVTKVKGFG 234 (689)
T ss_dssp ------------------------------CHHHHHHHHHTTCEEEEEECSS
T ss_pred ------------------------------cHHHHHHHHhCCeEEEeccCCC
Confidence 1346778889999988876443
No 311
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=93.36 E-value=0.31 Score=41.67 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=66.0
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC----C-------CcceEEEeccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS----I-------HVVDAIFMKWV 133 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~----~-------p~~D~v~~~~~ 133 (244)
-+++|+-||.|.++..+.+.. .+.+.++|. +..++..+.+ +...++.+|+.+. + +..|+++...-
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 479999999999999999876 442468888 7776666553 6778888998654 2 22499998877
Q ss_pred cccCC-------HHHHHHHHH---HHHHHcCCCCEEEEecccCC
Q 041308 134 LTTWT-------DDECKLIME---NYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 134 lh~~~-------~~~~~~~l~---~~~~~L~pgG~lii~d~~~~ 167 (244)
+..++ ++..-.++. ++.+.++| +++++|.+..
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~g 122 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVPG 122 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECTT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecchH
Confidence 76665 122223444 34455667 6777777543
No 312
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=93.32 E-value=0.13 Score=43.46 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=50.9
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCCC----C--cceEEEeccccccC
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKSI----H--VVDAIFMKWVLTTW 137 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~~----p--~~D~v~~~~~lh~~ 137 (244)
..+++|+-||.|.+...+.+..-+.+.+.++|. +..++..+.+ +...++.+|+.+-. + ..|+++...-+..+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 358999999999999999988633332688898 8777777654 55667888986542 3 24999988776555
Q ss_pred C
Q 041308 138 T 138 (244)
Q Consensus 138 ~ 138 (244)
+
T Consensus 82 S 82 (343)
T 1g55_A 82 T 82 (343)
T ss_dssp -
T ss_pred h
Confidence 5
No 313
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=93.09 E-value=0.11 Score=38.54 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=62.3
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeech-HHHHhCCCCCCeeEEeCCCCCCCCc-----c-eEEE--ecccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDLP-EVVAKAPSIPEVTHIGGDMFKSIHV-----V-DAIF--MKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~-~~i~~a~~~~~i~~~~gd~~~~~p~-----~-D~v~--~~~~lh~ 136 (244)
..-|||+|=|+|..=-++.+.+|+-+ +.++|.. ..-..+.. +.-.++.||+.+.+|. + .+.+ .-.-.|+
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~-I~vfDR~~~~hp~~~P-~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~G~g~ 118 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGRE-IYVFERAVASHPDSTP-PEAQLILGDIRETLPATLERFGATASLVHADLGGHN 118 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSC-EEEEESSCCCCGGGCC-CGGGEEESCHHHHHHHHHHHHCSCEEEEEECCCCSC
T ss_pred CCceEEecCCCChhHHHHHHhCCCCc-EEEEEeeeccCCCCCC-chHheecccHHHHHHHHHHhcCCceEEEEeecCCCC
Confidence 37899999999999999999999999 9999962 11111111 4557888998776553 2 3333 3333332
Q ss_pred CCHHH---HHHHHHHHHHHcCCCCEEEEeccc
Q 041308 137 WTDDE---CKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 137 ~~~~~---~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.+.+ +..+---+..+|.|||.++.-+..
T Consensus 119 -~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 119 -REKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp -HHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred -cchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 2221 112223456778899988876554
No 314
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=93.08 E-value=0.14 Score=47.08 Aligned_cols=121 Identities=14% Similarity=0.028 Sum_probs=71.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHc-------C-----CCCeEEEeec----hHHHH-hCCC--------------C-----
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKH-------C-----FICEGINFDL----PEVVA-KAPS--------------I----- 108 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~~D~----~~~i~-~a~~--------------~----- 108 (244)
+.-+|+|+|-|||.+.....+.. | .++ ++.++. ++.+. .... .
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~-~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLH-FISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 144 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEE-EEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCS
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEE-EEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCC
Confidence 34599999999999988876653 2 245 677764 22222 1110 0
Q ss_pred -----------CCeeEEeCCCCCCCC--------cceEEEeccccccCCHH-HHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 109 -----------PEVTHIGGDMFKSIH--------VVDAIFMKWVLTTWTDD-ECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 109 -----------~~i~~~~gd~~~~~p--------~~D~v~~~~~lh~~~~~-~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
-++++..||..+.++ ..|++++--+--.-.++ -...+++++++.++|||.+...-.
T Consensus 145 ~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~---- 220 (676)
T 3ps9_A 145 GCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS---- 220 (676)
T ss_dssp EEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCC----
T ss_pred CceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccC----
Confidence 123456677654322 14888764322111111 124688999999999988774111
Q ss_pred CCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCeEEEEEcc
Q 041308 169 DSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHLRAFISI 220 (244)
Q Consensus 169 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 220 (244)
...+++.+.++||.+.+.....
T Consensus 221 ------------------------------~~~vr~~L~~aGf~v~~~~~~g 242 (676)
T 3ps9_A 221 ------------------------------AGFVRRGLQDAGFTMQKRKGFG 242 (676)
T ss_dssp ------------------------------CHHHHHHHHHHTCEEEEEECST
T ss_pred ------------------------------cHHHHHHHHhCCeEEEeccccc
Confidence 1245777889999887765443
No 315
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=92.07 E-value=0.14 Score=42.88 Aligned_cols=125 Identities=14% Similarity=0.024 Sum_probs=80.3
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeE-EEeec-hHHHHhCCCC-CCeeEEeCCCCCC----CCc--ceEEEecccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEG-INFDL-PEVVAKAPSI-PEVTHIGGDMFKS----IHV--VDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~-~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~----~p~--~D~v~~~~~lh~ 136 (244)
.-+++|+-||.|.+...+.+..-+.+.+ .++|. +..++..+.+ +.. +..+|+.+- ++. .|+++...-+..
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~ 88 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQP 88 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCTT
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCccC
Confidence 4689999999999999999876434513 48898 7776665544 222 567888654 332 499998877766
Q ss_pred C--C--------HHHHHHHHHHHHH-HcCC---CCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHH
Q 041308 137 W--T--------DDECKLIMENYYK-ALLA---GRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEF 202 (244)
Q Consensus 137 ~--~--------~~~~~~~l~~~~~-~L~p---gG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~ 202 (244)
+ + ++..-.++.++.+ .++- .-+++++|.+..-. .+ .+.+.+
T Consensus 89 fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~-----------------------~~--~~~~~i 143 (327)
T 3qv2_A 89 YNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFK-----------------------ES--LVFKEI 143 (327)
T ss_dssp CSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGG-----------------------GS--HHHHHH
T ss_pred cccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhc-----------------------Ch--HHHHHH
Confidence 6 2 1222356666666 5432 23677777643210 00 235677
Q ss_pred HHHHHhCCCCeEEE
Q 041308 203 KQLGFSTGFPHLRA 216 (244)
Q Consensus 203 ~~ll~~aGf~~~~~ 216 (244)
.+.|++.|+.+...
T Consensus 144 ~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 144 YNILIKNQYYIKDI 157 (327)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHhCCCEEEEE
Confidence 88889999986554
No 316
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=91.74 E-value=0.39 Score=41.10 Aligned_cols=101 Identities=16% Similarity=0.012 Sum_probs=64.4
Q ss_pred ccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeC---CC-CCCC----C--c
Q 041308 58 DGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGG---DM-FKSI----H--V 124 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~g---d~-~~~~----p--~ 124 (244)
+... ++++.+||-+|+|. |.++..+++.. +. + ++++|. +..++.+++..- +++.. |+ .+.+ + .
T Consensus 179 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~-Vi~~~~~~~~~~~a~~lGa-~~i~~~~~~~~~~~~~~~~~g~g 254 (398)
T 2dph_A 179 VSAG-VKPGSHVYIAGAGPVGRCAAAGARLL-GAAC-VIVGDQNPERLKLLSDAGF-ETIDLRNSAPLRDQIDQILGKPE 254 (398)
T ss_dssp HHTT-CCTTCEEEEECCSHHHHHHHHHHHHH-TCSE-EEEEESCHHHHHHHHTTTC-EEEETTSSSCHHHHHHHHHSSSC
T ss_pred HHcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCCE-EEEEcCCHHHHHHHHHcCC-cEEcCCCcchHHHHHHHHhCCCC
Confidence 4444 77889999999876 88999999875 45 6 899997 777777776432 33321 11 1101 1 1
Q ss_pred ceEEEecccccc---------CCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 125 VDAIFMKWVLTT---------WTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 125 ~D~v~~~~~lh~---------~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.|+|+-.---.. .++ ...++.+.+.|+|||+++++-..
T Consensus 255 ~Dvvid~~g~~~~~~~~~~~~~~~---~~~~~~~~~~l~~gG~iv~~G~~ 301 (398)
T 2dph_A 255 VDCGVDAVGFEAHGLGDEANTETP---NGALNSLFDVVRAGGAIGIPGIY 301 (398)
T ss_dssp EEEEEECSCTTCBCSGGGTTSBCT---THHHHHHHHHEEEEEEEECCSCC
T ss_pred CCEEEECCCCcccccccccccccc---HHHHHHHHHHHhcCCEEEEeccc
Confidence 388774432110 011 13578889999999999887543
No 317
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=91.30 E-value=0.7 Score=39.93 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=58.1
Q ss_pred cceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEecccccc
Q 041308 66 VKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~ 136 (244)
..+|+=+|+|. |......+.. .+.. ++++|. +..++.+++ ..+.++.||..++ + ..+|+|++..
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~-~g~~-vvvId~d~~~v~~~~~-~g~~vi~GDat~~~~L~~agi~~A~~viv~~---- 76 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLS-SGVK-MVVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAI---- 76 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH-TTCC-EEEEECCHHHHHHHHH-TTCCCEESCTTCHHHHHHTTTTTCSEEEECC----
T ss_pred CCeEEEECCCHHHHHHHHHHHH-CCCC-EEEEECCHHHHHHHHh-CCCeEEEcCCCCHHHHHhcCCCccCEEEECC----
Confidence 45788898863 4433333333 2466 999999 888887765 4677889999765 2 2358777542
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
++++.-..+-...+.+.|..+++..
T Consensus 77 -~~~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 77 -DDPQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp -SSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred -CChHHHHHHHHHHHHhCCCCeEEEE
Confidence 3344445556677778898777763
No 318
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=91.04 E-value=0.61 Score=39.41 Aligned_cols=98 Identities=15% Similarity=0.056 Sum_probs=61.5
Q ss_pred ccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC---CCCCCC----C-cceE
Q 041308 58 DGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG---DMFKSI----H-VVDA 127 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g---d~~~~~----p-~~D~ 127 (244)
+... .++..+||-+|+|. |..+..+++....-+ ++++|. +.-++.+++..--.++.. |+.+.+ + ..|+
T Consensus 184 ~~~~-~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 184 NALK-VTPASSFVTWGAGAVGLSALLAAKVCGASI-IIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp TTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSE-EEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred hccC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcE
Confidence 4444 67789999999885 888888888753225 888887 777666654321122221 111111 1 1377
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
|+-.-- .. ..++.+.+.|+|||+++++-..
T Consensus 262 vid~~g-----~~---~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 262 ALESTG-----SP---EILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp EEECSC-----CH---HHHHHHHHTEEEEEEEEECCCC
T ss_pred EEECCC-----CH---HHHHHHHHHHhcCCEEEEeCCC
Confidence 763321 12 4578889999999999987543
No 319
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=90.74 E-value=1.1 Score=36.37 Aligned_cols=88 Identities=11% Similarity=-0.033 Sum_probs=53.5
Q ss_pred ceEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHH
Q 041308 67 KRLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 67 ~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~ 143 (244)
.+|.=||+|. +.++..+.+..+..+ +++.|. +...+.+++...+.....|..+....+|+|++. .++....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 80 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYK-IVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA-----VPIKKTI 80 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSE-EEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC-----SCHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc-----CCHHHHH
Confidence 4788899884 334555666544567 889998 666554433222112233443334456998876 4555556
Q ss_pred HHHHHHHHH-cCCCCEEE
Q 041308 144 LIMENYYKA-LLAGRKLI 160 (244)
Q Consensus 144 ~~l~~~~~~-L~pgG~li 160 (244)
.+++++... ++||..++
T Consensus 81 ~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 81 DFIKILADLDLKEDVIIT 98 (290)
T ss_dssp HHHHHHHTSCCCTTCEEE
T ss_pred HHHHHHHhcCCCCCCEEE
Confidence 788888877 88876555
No 320
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=90.74 E-value=1.4 Score=36.88 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=58.9
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeCC------CCCCC----C-cceEE
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGGD------MFKSI----H-VVDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~gd------~~~~~----p-~~D~v 128 (244)
.+++.+||-+|+|. |..+..+++.. +. + ++++|. +.-.+.+++..--.++..+ ..+.+ + ..|+|
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~v 246 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQ-VVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVT 246 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCE-EEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEE
Confidence 67789999999874 88888888875 45 6 888987 6666666643211222211 10011 1 13877
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+-.- ..+ ..++.+.+.|+|||+++++-.
T Consensus 247 id~~-----g~~---~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 247 IECT-----GAE---ASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp EECS-----CCH---HHHHHHHHHSCTTCEEEECSC
T ss_pred EECC-----CCh---HHHHHHHHHhcCCCEEEEEec
Confidence 6332 222 356788899999999998754
No 321
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=90.20 E-value=0.41 Score=41.34 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=34.8
Q ss_pred CCCcceEEEEcCCccHHHHHHH-HHcCC-CCeEEEeec-hHHHHhCC
Q 041308 63 FKGVKRLVDVGGSAGDCLRIIL-QKHCF-ICEGINFDL-PEVVAKAP 106 (244)
Q Consensus 63 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~-~~~~~~~D~-~~~i~~a~ 106 (244)
+++...++|||++.|.++..++ +..+. .+ +++++. |...+..+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~-V~afEP~p~~~~~L~ 269 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFER-VWMIEPDRINLQTLQ 269 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSE-EEEECCCHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCE-EEEEcCCHHHHHHHH
Confidence 3677899999999999999988 56665 57 999998 77665554
No 322
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=90.05 E-value=0.65 Score=38.66 Aligned_cols=90 Identities=8% Similarity=-0.039 Sum_probs=60.7
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC-CC--------CcceEEEec
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK-SI--------HVVDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~-~~--------p~~D~v~~~ 131 (244)
.++..+||-+|+| .|..+..+++.. +.+ ++++|. +.-.+.+++..--.++. ..+ ++ +..|+++-.
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~~i~--~~~~~~~~~~~~~~g~~d~vid~ 239 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAM-GLR-VAAVDIDDAKLNLARRLGAEVAVN--ARDTDPAAWLQKEIGGAHGVLVT 239 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHTTCSEEEE--TTTSCHHHHHHHHHSSEEEEEES
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHHcCCCEEEe--CCCcCHHHHHHHhCCCCCEEEEe
Confidence 6778999999986 489999999876 557 999998 77777776542212222 211 11 123776643
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.. . ...++.+.+.|+|||+++++-.
T Consensus 240 ~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 240 AV-----S---PKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp SC-----C---HHHHHHHHHHEEEEEEEEECSC
T ss_pred CC-----C---HHHHHHHHHHhccCCEEEEeCC
Confidence 22 1 2467889999999999998754
No 323
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=89.92 E-value=1.2 Score=35.93 Aligned_cols=89 Identities=13% Similarity=0.087 Sum_probs=52.5
Q ss_pred eEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCC-cceEEEeccccccCCHHHHH
Q 041308 68 RLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIH-VVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 68 ~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p-~~D~v~~~~~lh~~~~~~~~ 143 (244)
+|.=||+|. |. ++..+.+.....+ ++++|. +..++.+++..-......|..+.+. .+|+|++. .++....
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 76 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGK-IYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFR 76 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSE-EEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEc-----CCHHHHH
Confidence 577788773 33 3444444332236 888998 6666555432211111233322244 56988865 5556667
Q ss_pred HHHHHHHHHcCCCCEEEEe
Q 041308 144 LIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 144 ~~l~~~~~~L~pgG~lii~ 162 (244)
.+++++...++|+..++.+
T Consensus 77 ~v~~~l~~~l~~~~iv~~~ 95 (281)
T 2g5c_A 77 EIAKKLSYILSEDATVTDQ 95 (281)
T ss_dssp HHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHhhCCCCcEEEEC
Confidence 8888898889998765543
No 324
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.64 E-value=2.3 Score=31.72 Aligned_cols=90 Identities=11% Similarity=0.061 Sum_probs=51.4
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--------CCcceEEEeccccc
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--------IHVVDAIFMKWVLT 135 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--------~p~~D~v~~~~~lh 135 (244)
..+|+=+|+| .|......+....+.+ ++++|. +..++.+++ ..+.++.+|..++ +..+|+|+...
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~-V~vid~~~~~~~~~~~-~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~--- 113 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKI-SLGIEIREEAAQQHRS-EGRNVISGDATDPDFWERILDTGHVKLVLLAM--- 113 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSC-EEEEESCHHHHHHHHH-TTCCEEECCTTCHHHHHTBCSCCCCCEEEECC---
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCe-EEEEECCHHHHHHHHH-CCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC---
Confidence 4689999886 3443333222210346 899998 766665553 3566777887542 12358777542
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
++++....+-...+.+.|...++..
T Consensus 114 --~~~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 114 --PHHQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp --SSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred --CChHHHHHHHHHHHHHCCCCEEEEE
Confidence 2222223334466677888887763
No 325
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=89.06 E-value=5 Score=28.98 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=53.2
Q ss_pred CCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-------CCcceEEEecccc
Q 041308 64 KGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-------IHVVDAIFMKWVL 134 (244)
Q Consensus 64 ~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-------~p~~D~v~~~~~l 134 (244)
....+|+=+|+|. |......+... +.+ ++++|. +..++.++....+.++.+|..++ +..+|+|+..-
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~-V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~-- 92 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-GHS-VVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT-- 92 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS--
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCe-EEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe--
Confidence 4457999999863 44333333332 346 899998 77777666233456677776432 12248877652
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+++.....+..+.+.+.|..+++.
T Consensus 93 ---~~~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 93 ---NDDSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp ---SCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred ---CCcHHHHHHHHHHHHHCCCCeEEE
Confidence 233334455556666666666655
No 326
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=88.74 E-value=3.7 Score=31.94 Aligned_cols=88 Identities=10% Similarity=-0.004 Sum_probs=56.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-------CCcceEEEecccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-------IHVVDAIFMKWVL 134 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-------~p~~D~v~~~~~l 134 (244)
+...+++=+|+ |..+..+++..... . ++++|. +..++.++ ..+.++.||..++ +..+|+|++.
T Consensus 7 ~~~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~--- 78 (234)
T 2aef_A 7 AKSRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVD--- 78 (234)
T ss_dssp ---CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEEC---
T ss_pred CCCCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEc---
Confidence 34468898887 67778887776432 3 677787 76666555 5688999998754 2235887754
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.++++.-.......+.+.|+.+++.
T Consensus 79 --~~~d~~n~~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 79 --LESDSETIHCILGIRKIDESVRIIA 103 (234)
T ss_dssp --CSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred --CCCcHHHHHHHHHHHHHCCCCeEEE
Confidence 2333333445566777888767665
No 327
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=88.56 E-value=3.2 Score=28.95 Aligned_cols=86 Identities=19% Similarity=0.083 Sum_probs=49.4
Q ss_pred ceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-------CCcceEEEecccccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-------IHVVDAIFMKWVLTT 136 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-------~p~~D~v~~~~~lh~ 136 (244)
.+|+=+|+| ..+..+++.. .+.+ ++++|. +..++..++...+.++.+|..++ +..+|+|+..-
T Consensus 5 m~i~IiG~G--~iG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~---- 77 (140)
T 1lss_A 5 MYIIIAGIG--RVGYTLAKSLSEKGHD-IVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT---- 77 (140)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC----
T ss_pred CEEEEECCC--HHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee----
Confidence 578888874 4444444332 2356 888998 66655444323566777887542 22358877652
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
++++....+..+.+.++++ ++++
T Consensus 78 -~~~~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 78 -GKEEVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp -SCHHHHHHHHHHHHHTTCC-CEEE
T ss_pred -CCchHHHHHHHHHHHcCCC-EEEE
Confidence 2233334455666778885 4443
No 328
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=88.29 E-value=1.3 Score=37.47 Aligned_cols=100 Identities=13% Similarity=0.006 Sum_probs=64.1
Q ss_pred HhccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCC-CCCCC--------C-
Q 041308 56 VLDGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGD-MFKSI--------H- 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd-~~~~~--------p- 123 (244)
+.+... .++..+||-+|+| .|..+..+++...--+ ++++|. +.-++.+++..--.++... ..+++ +
T Consensus 185 l~~~~~-~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~g 262 (378)
T 3uko_A 185 VWNTAK-VEPGSNVAIFGLGTVGLAVAEGAKTAGASR-IIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDG 262 (378)
T ss_dssp HHTTTC-CCTTCCEEEECCSHHHHHHHHHHHHHTCSC-EEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTS
T ss_pred HHhhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCC
Confidence 334444 7778999999987 5888888888763336 999997 7777777765222222111 00111 1
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEeccc
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEPV 165 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~~ 165 (244)
..|+|+-. .... ..++.+.+.|+|| |+++++-..
T Consensus 263 g~D~vid~-----~g~~---~~~~~~~~~l~~g~G~iv~~G~~ 297 (378)
T 3uko_A 263 GVDYSFEC-----IGNV---SVMRAALECCHKGWGTSVIVGVA 297 (378)
T ss_dssp CBSEEEEC-----SCCH---HHHHHHHHTBCTTTCEEEECSCC
T ss_pred CCCEEEEC-----CCCH---HHHHHHHHHhhccCCEEEEEccc
Confidence 13777743 2222 4578899999997 999987653
No 329
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=88.24 E-value=0.81 Score=38.17 Aligned_cols=94 Identities=14% Similarity=0.054 Sum_probs=62.2
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCC--CCCCC----C--cceEEEecc
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGD--MFKSI----H--VVDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd--~~~~~----p--~~D~v~~~~ 132 (244)
.++..+||-+|+|. |..+..+++.....+ ++++|. +.-.+.+++..--.++..+ ..+.+ + ..|+|+-.
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~-Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~- 246 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAAR-VIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDF- 246 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCE-EEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEES-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEEC-
Confidence 56788999999874 888999998775667 999998 7777777654222222211 11111 1 13777633
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
...+ ..++.+.+.|+|||+++++-..
T Consensus 247 ----~G~~---~~~~~~~~~l~~~G~iv~~G~~ 272 (345)
T 3jv7_A 247 ----VGAQ---STIDTAQQVVAVDGHISVVGIH 272 (345)
T ss_dssp ----SCCH---HHHHHHHHHEEEEEEEEECSCC
T ss_pred ----CCCH---HHHHHHHHHHhcCCEEEEECCC
Confidence 2222 4678899999999999987643
No 330
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=88.24 E-value=1.2 Score=37.54 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=58.6
Q ss_pred CcceEEEEc--CCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-------C-Cc-ceEEEecc
Q 041308 65 GVKRLVDVG--GSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-------I-HV-VDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-------~-p~-~D~v~~~~ 132 (244)
++.+||=+| +|.|..+..+++.....+ ++++|. +.-.+.+++..--.++ |..++ + +. .|+|+-.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~-Vi~~~~~~~~~~~~~~lGad~vi--~~~~~~~~~v~~~~~~g~Dvvid~- 246 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLT-VIATASRPETQEWVKSLGAHHVI--DHSKPLAAEVAALGLGAPAFVFST- 246 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSE-EEEECSSHHHHHHHHHTTCSEEE--CTTSCHHHHHHTTCSCCEEEEEEC-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHHHHcCCCEEE--eCCCCHHHHHHHhcCCCceEEEEC-
Confidence 678999998 357889999998755678 999998 7767766654221222 22111 1 11 3777643
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
...+ ..++.+.+.|+|||+++++.
T Consensus 247 ----~g~~---~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 247 ----THTD---KHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp ----SCHH---HHHHHHHHHSCTTCEEEECS
T ss_pred ----CCch---hhHHHHHHHhcCCCEEEEEC
Confidence 2222 46788999999999999873
No 331
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=88.23 E-value=3.8 Score=29.11 Aligned_cols=88 Identities=15% Similarity=0.064 Sum_probs=54.4
Q ss_pred cceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEecccccc
Q 041308 66 VKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~ 136 (244)
..+|+=+|+|. |......+.. .+.+ ++++|. ++.++.+++ ..+.++.||..++ + ..+|++++..-
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~-~g~~-v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~--- 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA-SDIP-LVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP--- 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH-TTCC-EEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS---
T ss_pred CCCEEEECcCHHHHHHHHHHHH-CCCC-EEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC---
Confidence 36899999863 4433333333 2456 999998 877776665 5778889998764 2 22587775422
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
++.+... +-...+.+.|+.+++.
T Consensus 81 -~~~~n~~-~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 81 -NGYEAGE-IVASARAKNPDIEIIA 103 (140)
T ss_dssp -CHHHHHH-HHHHHHHHCSSSEEEE
T ss_pred -ChHHHHH-HHHHHHHHCCCCeEEE
Confidence 1233333 3345666788887665
No 332
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=88.19 E-value=0.49 Score=39.61 Aligned_cols=90 Identities=14% Similarity=-0.019 Sum_probs=59.7
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCC-cceEEEeccccccCCH
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIH-VVDAIFMKWVLTTWTD 139 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p-~~D~v~~~~~lh~~~~ 139 (244)
.+++.+||-+|+|. |..+..+++.. +.+ ++++|. +.-.+.+++..--.++ .|. +.+. ..|+|+-.-- .
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~v~-~~~-~~~~~~~D~vid~~g-----~ 244 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAE-VSVFARNEHKKQDALSMGVKHFY-TDP-KQCKEELDFIISTIP-----T 244 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHT-TCE-EEEECSSSTTHHHHHHTTCSEEE-SSG-GGCCSCEEEEEECCC-----S
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHhcCCCeec-CCH-HHHhcCCCEEEECCC-----c
Confidence 77789999999874 88888888875 567 999887 6666666654222222 221 1122 2487774322 1
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 140 DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ..++.+.+.|+|||+++++-.
T Consensus 245 ~---~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 245 H---YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp C---CCHHHHHTTEEEEEEEEECCC
T ss_pred H---HHHHHHHHHHhcCCEEEEECC
Confidence 1 246778889999999999754
No 333
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=88.05 E-value=0.61 Score=38.13 Aligned_cols=97 Identities=12% Similarity=-0.058 Sum_probs=69.0
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC----CCc---ceEEEeccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS----IHV---VDAIFMKWV 133 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~----~p~---~D~v~~~~~ 133 (244)
...+||+=+|||.+++++++. .-+ ++.+|. +..++..+++ .++++..+|.++. .|. .|+|++---
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~-~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP 168 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDR-LYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS 168 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSE-EEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCe-EEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence 467899999999999999983 345 999999 8777776664 6799999997553 232 499998876
Q ss_pred cccCCHHHHHHHHHHHHH--HcCCCCEEEEecccCC
Q 041308 134 LTTWTDDECKLIMENYYK--ALLAGRKLIACEPVLP 167 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~--~L~pgG~lii~d~~~~ 167 (244)
...-. +..++++.+.+ .+.|+|.+++--++.+
T Consensus 169 Ye~k~--~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 169 YERKE--EYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp CCSTT--HHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CCCCc--HHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 65322 23344544444 4568999998665543
No 334
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=87.78 E-value=1.2 Score=37.99 Aligned_cols=96 Identities=13% Similarity=-0.067 Sum_probs=61.5
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC----C----C--cceEEE
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS----I----H--VVDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~----~----p--~~D~v~ 129 (244)
++++.+||-+|+|. |.++..+++.. +. + ++++|. +.-++.+++..- +++..+-.+. + + ..|+|+
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~-Ga~~-Vi~~~~~~~~~~~a~~lGa-~~i~~~~~~~~~~~v~~~t~g~g~Dvvi 259 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLL-GAAV-VIVGDLNPARLAHAKAQGF-EIADLSLDTPLHEQIAALLGEPEVDCAV 259 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHTTC-EEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCCe-EEEEcCCHHHHHHHHHcCC-cEEccCCcchHHHHHHHHhCCCCCCEEE
Confidence 67789999999874 88899999875 44 5 888887 777777765422 3332111011 1 1 138877
Q ss_pred eccc----------cccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 130 MKWV----------LTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 130 ~~~~----------lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
-.-- .|+-.+ ...++.+.+.|++||+++++-.
T Consensus 260 d~~G~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 260 DAVGFEARGHGHEGAKHEAP---ATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp ECCCTTCBCSSTTGGGSBCT---THHHHHHHHHEEEEEEEEECSC
T ss_pred ECCCCcccccccccccccch---HHHHHHHHHHHhcCCEEEEecc
Confidence 4422 222212 2457889999999999988754
No 335
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=87.60 E-value=1.5 Score=33.15 Aligned_cols=89 Identities=10% Similarity=-0.055 Sum_probs=55.6
Q ss_pred CCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC---------CC-c-ceEE
Q 041308 63 FKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS---------IH-V-VDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~---------~p-~-~D~v 128 (244)
.++..+||..|+ |.|..+..+++.. +.+ ++++|. ++..+.+++...-... |..+. .. . .|++
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~-V~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~~~~D~v 111 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI-GAR-IYTTAGSDAKREMLSRLGVEYVG--DSRSVDFADEILELTDGYGVDVV 111 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCE-EEEEESSHHHHHHHHTTCCSEEE--ETTCSTHHHHHHHHTTTCCEEEE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHcCCCEEe--eCCcHHHHHHHHHHhCCCCCeEE
Confidence 677889999994 5677777776654 357 888888 6666555443211111 22211 11 1 3777
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+-+. .. ..++.+.+.|+|||+++++-.
T Consensus 112 i~~~-----g~----~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 112 LNSL-----AG----EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp EECC-----CT----HHHHHHHHTEEEEEEEEECSC
T ss_pred EECC-----ch----HHHHHHHHHhccCCEEEEEcC
Confidence 7432 11 347888899999999998754
No 336
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=87.39 E-value=1.5 Score=36.97 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=59.4
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEe---CCCC----C---CCC-cceEE
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIG---GDMF----K---SIH-VVDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~---gd~~----~---~~p-~~D~v 128 (244)
.+++.+||-+|+|. |.++..+++.. +. + ++++|. +.-.+.+++..--.++. .|+. + ..+ ..|+|
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvv 257 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLA-GATT-VILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVV 257 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSE-EEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCE-EEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEE
Confidence 67789999999874 88888888875 44 6 888887 76666666432111221 1110 0 111 13877
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+-. .... ..++.+.+.|+|||+++++-..
T Consensus 258 id~-----~G~~---~~~~~~~~~l~~~G~vv~~G~~ 286 (370)
T 4ej6_A 258 IEC-----AGVA---ETVKQSTRLAKAGGTVVILGVL 286 (370)
T ss_dssp EEC-----SCCH---HHHHHHHHHEEEEEEEEECSCC
T ss_pred EEC-----CCCH---HHHHHHHHHhccCCEEEEEecc
Confidence 743 2212 4578889999999999987654
No 337
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=87.39 E-value=3.7 Score=29.01 Aligned_cols=85 Identities=11% Similarity=0.030 Sum_probs=50.6
Q ss_pred ceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEecccccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTT 136 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~ 136 (244)
.+++=+|+| .++..+++.. .+.+ ++++|. +..++.+++ ..+.++.+|..++ + ..+|+|+...-
T Consensus 7 ~~v~I~G~G--~iG~~la~~L~~~g~~-V~~id~~~~~~~~~~~-~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~--- 79 (141)
T 3llv_A 7 YEYIVIGSE--AAGVGLVRELTAAGKK-VLAVDKSKEKIELLED-EGFDAVIADPTDESFYRSLDLEGVSAVLITGS--- 79 (141)
T ss_dssp CSEEEECCS--HHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHH-TTCEEEECCTTCHHHHHHSCCTTCSEEEECCS---
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHH-CCCcEEECCCCCHHHHHhCCcccCCEEEEecC---
Confidence 578999985 3544444432 2456 999998 777666554 4578888998764 2 23587775432
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+++. ...+....+.+. ..+++.
T Consensus 80 -~~~~-n~~~~~~a~~~~-~~~iia 101 (141)
T 3llv_A 80 -DDEF-NLKILKALRSVS-DVYAIV 101 (141)
T ss_dssp -CHHH-HHHHHHHHHHHC-CCCEEE
T ss_pred -CHHH-HHHHHHHHHHhC-CceEEE
Confidence 2333 333444555566 455544
No 338
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=87.35 E-value=1.8 Score=33.35 Aligned_cols=86 Identities=13% Similarity=0.159 Sum_probs=54.1
Q ss_pred eEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEeccccccC
Q 041308 68 RLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTTW 137 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~~ 137 (244)
+|+=+|+ |.++..+++.. .+.. ++++|. ++.++...+...+.++.+|..++ + ..+|++++. .
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~-v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~-----~ 73 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYG-VVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVIL-----T 73 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEEC-----C
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEe-----c
Confidence 4666775 56666655543 2456 899998 77666543334678899998764 2 235888754 2
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 138 TDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
++++...++....+.+.|..+++.
T Consensus 74 ~~d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 74 PRDEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp SCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCcHHHHHHHHHHHHHcCCCeEEE
Confidence 334444556666666777777665
No 339
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=87.22 E-value=3.3 Score=34.24 Aligned_cols=95 Identities=12% Similarity=-0.031 Sum_probs=58.9
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC------CCc---ceEEEec
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS------IHV---VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~------~p~---~D~v~~~ 131 (244)
.++..+||=.|+| .|.++..+++....-. ++++|. +.-++.+++..--.++..+-.+. +.. .|+|+-.
T Consensus 158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~-vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~ 236 (346)
T 4a2c_A 158 GCENKNVIIIGAGTIGLLAIQCAVALGAKS-VTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILET 236 (346)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEEC
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHcCCcE-EEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCccccccc
Confidence 6678999999986 4667777777654334 678887 77777777653333332111110 111 2665533
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
. ... ..++.+.+.|+|||++++.-...
T Consensus 237 ~-----G~~---~~~~~~~~~l~~~G~~v~~g~~~ 263 (346)
T 4a2c_A 237 A-----GVP---QTVELAVEIAGPHAQLALVGTLH 263 (346)
T ss_dssp S-----CSH---HHHHHHHHHCCTTCEEEECCCCS
T ss_pred c-----ccc---chhhhhhheecCCeEEEEEeccC
Confidence 2 112 45788889999999999876543
No 340
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=86.43 E-value=0.71 Score=39.54 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=28.6
Q ss_pred CCcceEEEEcCCccHHHHHHHHHc-------CCCCeEEEeec-hHHH
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKH-------CFICEGINFDL-PEVV 102 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~~D~-~~~i 102 (244)
+..-+|+|+|+|+|.++..+++.. ..++ +++++. |...
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~-y~iVE~Sp~Lr 124 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLS-VHLVEINPVLR 124 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEE-EEEECCCHHHH
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccE-EEEEecCHHHH
Confidence 344689999999999999988652 2346 888998 5443
No 341
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=86.08 E-value=5.8 Score=32.98 Aligned_cols=92 Identities=9% Similarity=-0.062 Sum_probs=58.5
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC----CCCCC----CC----c-ceE
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG----DMFKS----IH----V-VDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g----d~~~~----~p----~-~D~ 127 (244)
.++..+||-+|+|. |..+..+++.. +.+ ++++|. +.-.+.+++..--.++.. |..+. .+ . .|+
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~ 243 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNV 243 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCE-EEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCE
Confidence 67789999999874 78888888765 567 888887 766666654321122221 11111 11 2 387
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+-.. ... ..++.+.+.|+|||+++++-.
T Consensus 244 vid~~-----g~~---~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 244 TIDCS-----GNE---KCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp EEECS-----CCH---HHHHHHHHHSCTTCEEEECSC
T ss_pred EEECC-----CCH---HHHHHHHHHHhcCCEEEEEec
Confidence 76332 122 357788899999999998754
No 342
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=85.26 E-value=3.2 Score=34.94 Aligned_cols=96 Identities=17% Similarity=0.039 Sum_probs=59.7
Q ss_pred ccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeC-CCCCCC---------Cc
Q 041308 58 DGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGG-DMFKSI---------HV 124 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~g-d~~~~~---------p~ 124 (244)
+... .++..+||-+|+| .|..+..+++.. +. + ++++|. +.-++.+++..--.++.. +..+++ ..
T Consensus 186 ~~~~-~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g 262 (374)
T 1cdo_A 186 NTAK-VEPGSTCAVFGLGAVGLAAVMGCHSA-GAKR-IIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGG 262 (374)
T ss_dssp TTTC-CCTTCEEEEECCSHHHHHHHHHHHHT-TCSE-EEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred hccC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCCE-EEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCC
Confidence 3344 6778999999986 488888888875 45 6 888886 666666654321122211 100111 11
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEP 164 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~ 164 (244)
.|+|+-.- ... ..++.+.+.|+|| |+++++-.
T Consensus 263 ~D~vid~~-----g~~---~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 263 VDFSLECV-----GNV---GVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp BSEEEECS-----CCH---HHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEEECC-----CCH---HHHHHHHHHhhcCCcEEEEEcC
Confidence 37776332 112 4578889999999 99998754
No 343
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=84.64 E-value=8.2 Score=27.65 Aligned_cols=87 Identities=13% Similarity=0.007 Sum_probs=51.5
Q ss_pred ceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-h-HHHHhCCC--CCCeeEEeCCCCCC--C-----CcceEEEeccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-P-EVVAKAPS--IPEVTHIGGDMFKS--I-----HVVDAIFMKWV 133 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~-~~i~~a~~--~~~i~~~~gd~~~~--~-----p~~D~v~~~~~ 133 (244)
.+++=+|+ |..+..+++.. .+.+ ++++|. + ...+..+. ...+.++.||..++ + ..+|+|++..
T Consensus 4 ~~vlI~G~--G~vG~~la~~L~~~g~~-V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~- 79 (153)
T 1id1_A 4 DHFIVCGH--SILAINTILQLNQRGQN-VTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS- 79 (153)
T ss_dssp SCEEEECC--SHHHHHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS-
T ss_pred CcEEEECC--CHHHHHHHHHHHHCCCC-EEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEec-
Confidence 57888876 55555555443 2456 888887 4 32222111 14688899998654 2 2358777552
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
++++.-..+....+.+.|..+++.
T Consensus 80 ----~~d~~n~~~~~~a~~~~~~~~ii~ 103 (153)
T 1id1_A 80 ----DNDADNAFVVLSAKDMSSDVKTVL 103 (153)
T ss_dssp ----SCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred ----CChHHHHHHHHHHHHHCCCCEEEE
Confidence 233334556667777878777765
No 344
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=84.26 E-value=0.67 Score=38.01 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=35.6
Q ss_pred CCeeEEeCCCCCC---CCc--ceEEEeccccccCCH------------------HHHHHHHHHHHHHcCCCCEEEEe
Q 041308 109 PEVTHIGGDMFKS---IHV--VDAIFMKWVLTTWTD------------------DECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 109 ~~i~~~~gd~~~~---~p~--~D~v~~~~~lh~~~~------------------~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.++.+++||.++. ++. .|+|++.--.....+ .....+++++.++|+|||.+++.
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4677888888653 443 488887754432110 11245789999999999999875
No 345
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=84.20 E-value=4 Score=34.29 Aligned_cols=96 Identities=15% Similarity=-0.017 Sum_probs=59.4
Q ss_pred ccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeC-CCCCCC--------C-c
Q 041308 58 DGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGG-DMFKSI--------H-V 124 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~g-d~~~~~--------p-~ 124 (244)
+... .++..+||-+|+|. |..+..+++.. +. + ++++|. +.-.+.+++..--.++.. +..+++ + .
T Consensus 185 ~~~~-~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g 261 (374)
T 2jhf_A 185 KVAK-VTQGSTCAVFGLGGVGLSVIMGCKAA-GAAR-IIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGG 261 (374)
T ss_dssp TTTC-CCTTCEEEEECCSHHHHHHHHHHHHT-TCSE-EEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hccC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCCe-EEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCC
Confidence 4444 67789999999864 88888888875 45 6 888886 666666654321122211 100111 1 1
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEP 164 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~ 164 (244)
.|+|+-.- ... ..++.+.+.|+|| |+++++-.
T Consensus 262 ~D~vid~~-----g~~---~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 262 VDFSFEVI-----GRL---DTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp BSEEEECS-----CCH---HHHHHHHHHBCTTTCEEEECSC
T ss_pred CcEEEECC-----CCH---HHHHHHHHHhhcCCcEEEEecc
Confidence 37776332 212 4578888999999 99998754
No 346
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=83.52 E-value=2.4 Score=35.63 Aligned_cols=97 Identities=11% Similarity=-0.035 Sum_probs=59.6
Q ss_pred ccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC-----CCCCCC----C-cc
Q 041308 58 DGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG-----DMFKSI----H-VV 125 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g-----d~~~~~----p-~~ 125 (244)
+... .++..+||-+|+| .|..+..+++....-+ ++++|. +.-.+.+++..--.++.. |+.+.+ + ..
T Consensus 185 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 185 NTAK-VTPGSTCAVFGLGGVGFSAIVGCKAAGASR-IIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp TTTC-CCTTCEEEEECCSHHHHHHHHHHHHHTCSE-EEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred hccC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCe-EEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 3344 6778999999986 4888888888753226 888886 666666654321122211 111101 1 23
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecc
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEP 164 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~ 164 (244)
|+|+-.- ... ..++.+.+.|+|| |+++++-.
T Consensus 263 Dvvid~~-----g~~---~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 263 DYAVECA-----GRI---ETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp SEEEECS-----CCH---HHHHHHHHTBCTTTCEEEECCC
T ss_pred CEEEECC-----CCH---HHHHHHHHHHhcCCCEEEEEcc
Confidence 8777332 112 4578889999999 99998754
No 347
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=83.22 E-value=0.95 Score=37.89 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=61.6
Q ss_pred ccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEe---CCCCCC----CCc--c
Q 041308 58 DGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIG---GDMFKS----IHV--V 125 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~---gd~~~~----~p~--~ 125 (244)
+... .+++.+||-+|+|. |.++..+++.. +. + ++++|. +.-++.+++..--.++. .|+.+. .+. .
T Consensus 160 ~~~~-~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~ 236 (352)
T 3fpc_A 160 ELAN-IKLGDTVCVIGIGPVGLMSVAGANHL-GAGR-IFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGV 236 (352)
T ss_dssp HHTT-CCTTCCEEEECCSHHHHHHHHHHHTT-TCSS-EEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCE
T ss_pred HhcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCcE-EEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCC
Confidence 4444 67789999999874 88888888765 45 6 999998 76666666532212221 111111 111 3
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
|+|+-.- ..+ ..++.+.+.|+|||+++++-..
T Consensus 237 D~v~d~~-----g~~---~~~~~~~~~l~~~G~~v~~G~~ 268 (352)
T 3fpc_A 237 DKVVIAG-----GDV---HTFAQAVKMIKPGSDIGNVNYL 268 (352)
T ss_dssp EEEEECS-----SCT---THHHHHHHHEEEEEEEEECCCC
T ss_pred CEEEECC-----CCh---HHHHHHHHHHhcCCEEEEeccc
Confidence 8777432 111 3578888999999999987643
No 348
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=83.16 E-value=4.4 Score=34.08 Aligned_cols=97 Identities=12% Similarity=0.000 Sum_probs=60.2
Q ss_pred hccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeC-CCCCCC---------C
Q 041308 57 LDGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGG-DMFKSI---------H 123 (244)
Q Consensus 57 ~~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~g-d~~~~~---------p 123 (244)
.+... .++..+||-+|+| .|..+..+++.. +. + ++++|. +.-.+.+++..--.++.. +..+++ .
T Consensus 188 ~~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~ 264 (376)
T 1e3i_A 188 INTAK-VTPGSTCAVFGLGCVGLSAIIGCKIA-GASR-IIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAG 264 (376)
T ss_dssp HTTSC-CCTTCEEEEECCSHHHHHHHHHHHHT-TCSE-EEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred HHhcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCCe-EEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCC
Confidence 34444 6778999999986 488888888875 45 6 888886 666666654321122211 100111 1
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecc
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEP 164 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~ 164 (244)
..|+|+-. .... ..++.+.+.|+|| |+++++-.
T Consensus 265 g~Dvvid~-----~G~~---~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 265 GVDYSLDC-----AGTA---QTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp CBSEEEES-----SCCH---HHHHHHHHTBCTTTCEEEECCC
T ss_pred CccEEEEC-----CCCH---HHHHHHHHHhhcCCCEEEEECC
Confidence 13777633 2212 4578889999999 99998754
No 349
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=82.90 E-value=3.5 Score=34.00 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=56.0
Q ss_pred CCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC--CC--------Cc-ceEE
Q 041308 63 FKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK--SI--------HV-VDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~--~~--------p~-~D~v 128 (244)
.++..+||-.|| |.|..+..+++.. +.+ ++++|. +..++.+++...-... |..+ .+ .. .|++
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~-V~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~~~~d~v 218 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLK-GCK-VVGAAGSDEKIAYLKQIGFDAAF--NYKTVNSLEEALKKASPDGYDCY 218 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTTCSEEE--ETTSCSCHHHHHHHHCTTCEEEE
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHhcCCcEEE--ecCCHHHHHHHHHHHhCCCCeEE
Confidence 677789999997 5777777777654 457 888887 6666655432211111 3222 11 11 3776
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+-+.- . ..++.+.+.|+|||+++++-.
T Consensus 219 i~~~g-----~----~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 219 FDNVG-----G----EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp EESSC-----H----HHHHHHHTTEEEEEEEEECCC
T ss_pred EECCC-----h----HHHHHHHHHHhcCCEEEEEec
Confidence 64322 2 237888899999999998754
No 350
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=82.88 E-value=1.6 Score=36.76 Aligned_cols=95 Identities=13% Similarity=-0.051 Sum_probs=60.9
Q ss_pred ccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCC--------C--cc
Q 041308 58 DGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSI--------H--VV 125 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~--------p--~~ 125 (244)
+... ++++.+||-+|+|. |..+..+++.. +.+ ++++|. +.-++.+++..--.++..+- +++ + ..
T Consensus 183 ~~~~-~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~v~~~~~g~g~ 258 (363)
T 3uog_A 183 EKGH-LRAGDRVVVQGTGGVALFGLQIAKAT-GAE-VIVTSSSREKLDRAFALGADHGINRLE-EDWVERVYALTGDRGA 258 (363)
T ss_dssp TTTC-CCTTCEEEEESSBHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHHTTCCE
T ss_pred HhcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCE-EEEEecCchhHHHHHHcCCCEEEcCCc-ccHHHHHHHHhCCCCc
Confidence 4444 77889999999774 88888888765 567 999997 66666665532222222111 111 1 13
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
|+|+-.-- . ..++.+.+.|+|||+++++-..
T Consensus 259 D~vid~~g-----~----~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 259 DHILEIAG-----G----AGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp EEEEEETT-----S----SCHHHHHHHEEEEEEEEEECCC
T ss_pred eEEEECCC-----h----HHHHHHHHHhhcCCEEEEEecC
Confidence 87774322 1 2367788899999999998653
No 351
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*
Probab=82.85 E-value=3.2 Score=34.79 Aligned_cols=92 Identities=16% Similarity=0.047 Sum_probs=59.3
Q ss_pred CCCcceEEEEc--CCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC---C----CCc-ceEEEec
Q 041308 63 FKGVKRLVDVG--GSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK---S----IHV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~---~----~p~-~D~v~~~ 131 (244)
.+++.+||-+| +|.|..+..+++.. +.+ +++++. ++-.+.+++..--.++..+-.+ . .+. .|+|+-+
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~-Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~ 238 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKA-KCH-VIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYES 238 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEEC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhC-CCE-EEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEEC
Confidence 67789999999 57899999998875 557 898987 6666665543211222211100 0 112 3877744
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
-. . ..++.+.++|+|+|+++++-..
T Consensus 239 ~g-----~----~~~~~~~~~l~~~G~iv~~g~~ 263 (362)
T 2c0c_A 239 VG-----G----AMFDLAVDALATKGRLIVIGFI 263 (362)
T ss_dssp SC-----T----HHHHHHHHHEEEEEEEEECCCG
T ss_pred CC-----H----HHHHHHHHHHhcCCEEEEEeCC
Confidence 22 1 3578888999999999987543
No 352
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=82.48 E-value=6.2 Score=32.63 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=59.9
Q ss_pred cCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-C--------Cc-c
Q 041308 59 GYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-I--------HV-V 125 (244)
Q Consensus 59 ~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~--------p~-~ 125 (244)
... + ++.+||-+|+| .|..+..+++.. +. + ++++|. +.-++.+++. --.++ |..++ + +. .
T Consensus 160 ~~~-~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~-Vi~~~~~~~~~~~~~~l-a~~v~--~~~~~~~~~~~~~~~~~g~ 232 (343)
T 2dq4_A 160 GSG-V-SGKSVLITGAGPIGLMAAMVVRAS-GAGP-ILVSDPNPYRLAFARPY-ADRLV--NPLEEDLLEVVRRVTGSGV 232 (343)
T ss_dssp TTC-C-TTSCEEEECCSHHHHHHHHHHHHT-TCCS-EEEECSCHHHHGGGTTT-CSEEE--CTTTSCHHHHHHHHHSSCE
T ss_pred hCC-C-CCCEEEEECCCHHHHHHHHHHHHc-CCCE-EEEECCCHHHHHHHHHh-HHhcc--CcCccCHHHHHHHhcCCCC
Confidence 444 5 77899999975 478888888775 45 7 999997 7777777764 22222 22221 1 11 3
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+|+-..- . ...++.+.+.|+|||+++++-.
T Consensus 233 D~vid~~g-----~---~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 233 EVLLEFSG-----N---EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp EEEEECSC-----C---HHHHHHHHHHEEEEEEEEECCC
T ss_pred CEEEECCC-----C---HHHHHHHHHHHhcCCEEEEEec
Confidence 77763322 1 1457888999999999998754
No 353
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=82.15 E-value=3.1 Score=34.35 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=59.8
Q ss_pred ccCCCCCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhC-CCCCCeeEEeCCCCCC-C--------Cc
Q 041308 58 DGYDGFKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKA-PSIPEVTHIGGDMFKS-I--------HV 124 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a-~~~~~i~~~~gd~~~~-~--------p~ 124 (244)
+... .++..+||-+|+ |.|..+..+++.. +.+ ++++|. +.-.+.+ ++..--.++ |..+. + +.
T Consensus 143 ~~~~-~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~-Vi~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~ 217 (336)
T 4b7c_A 143 DVGQ-PKNGETVVISGAAGAVGSVAGQIARLK-GCR-VVGIAGGAEKCRFLVEELGFDGAI--DYKNEDLAAGLKRECPK 217 (336)
T ss_dssp HTTC-CCTTCEEEESSTTSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTTCCSEEE--ETTTSCHHHHHHHHCTT
T ss_pred HhcC-CCCCCEEEEECCCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHHcCCCEEE--ECCCHHHHHHHHHhcCC
Confidence 4444 677899999997 5788888888764 457 999997 7666666 443221222 22111 1 12
Q ss_pred -ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 125 -VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.|+++-+- .. ..++.+.+.|+|||+++++-.
T Consensus 218 ~~d~vi~~~-----g~----~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 218 GIDVFFDNV-----GG----EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp CEEEEEESS-----CH----HHHHHHHTTEEEEEEEEECCC
T ss_pred CceEEEECC-----Cc----chHHHHHHHHhhCCEEEEEee
Confidence 37766432 22 357888899999999998754
No 354
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=82.03 E-value=0.59 Score=39.58 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=57.7
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC---CCCCCC-CcceEEEecccccc
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG---DMFKSI-HVVDAIFMKWVLTT 136 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g---d~~~~~-p~~D~v~~~~~lh~ 136 (244)
.+++.+||-+|+|. |..+..+++.. +.+ ++++|. +.-++.+++..--.++.. |..+.+ ...|+|+-.-.-
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~-- 267 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAH-VVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA-- 267 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCC--
Confidence 67789999999874 88888888765 567 888886 666665554321122211 111111 224887743221
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ..++.+.+.|+|||+++++-.
T Consensus 268 ---~---~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 268 ---P---HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp ---C---CCHHHHHTTEEEEEEEEECCC
T ss_pred ---H---HHHHHHHHHhccCCEEEEecc
Confidence 1 235677889999999998754
No 355
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=81.93 E-value=3.6 Score=34.58 Aligned_cols=96 Identities=17% Similarity=0.061 Sum_probs=59.1
Q ss_pred ccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEe-CCCCCCC--------C-c
Q 041308 58 DGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIG-GDMFKSI--------H-V 124 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~-gd~~~~~--------p-~ 124 (244)
+... .++..+||-+|+| .|.++..+++.. +. + ++++|. +.-.+.+++..--.++. .+..+++ + .
T Consensus 184 ~~~~-~~~g~~VlV~GaG~vG~~avqla~~~-Ga~~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g 260 (373)
T 2fzw_A 184 NTAK-LEPGSVCAVFGLGGVGLAVIMGCKVA-GASR-IIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGG 260 (373)
T ss_dssp TTTC-CCTTCEEEEECCSHHHHHHHHHHHHH-TCSE-EEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred hhcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCCe-EEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCC
Confidence 4444 6778999999976 488888888875 44 6 888886 66666655431112221 1100111 1 1
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCC-CEEEEecc
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAG-RKLIACEP 164 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pg-G~lii~d~ 164 (244)
.|+|+-.. ... ..++.+.+.|+|+ |+++++-.
T Consensus 261 ~D~vid~~-----g~~---~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 261 VDYSFECI-----GNV---KVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp BSEEEECS-----CCH---HHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEEECC-----CcH---HHHHHHHHhhccCCcEEEEEec
Confidence 38776332 112 4578889999999 99998754
No 356
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=81.89 E-value=5.3 Score=32.99 Aligned_cols=93 Identities=8% Similarity=0.003 Sum_probs=59.1
Q ss_pred ccCCCCCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC-CCCCeeEEeCCCCC--CC--------C
Q 041308 58 DGYDGFKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAP-SIPEVTHIGGDMFK--SI--------H 123 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~-~~~~i~~~~gd~~~--~~--------p 123 (244)
+... .++..+||-.|+ |.|..+..+++.. +.+ ++++|. +.-++.++ +...-.++ |..+ .+ +
T Consensus 149 ~~~~-~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~-V~~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~ 223 (345)
T 2j3h_A 149 EVCS-PKEGETVYVSAASGAVGQLVGQLAKMM-GCY-VVGSAGSKEKVDLLKTKFGFDDAF--NYKEESDLTAALKRCFP 223 (345)
T ss_dssp TTSC-CCTTCEEEESSTTSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTSCCSEEE--ETTSCSCSHHHHHHHCT
T ss_pred HHhC-CCCCCEEEEECCCcHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHHcCCceEE--ecCCHHHHHHHHHHHhC
Confidence 3344 677899999996 5788888888765 457 888887 66666655 33211222 2221 11 1
Q ss_pred c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 ~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
. .|+++-+. .. ..++.+.+.|+|||+++++-.
T Consensus 224 ~~~d~vi~~~-----g~----~~~~~~~~~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 224 NGIDIYFENV-----GG----KMLDAVLVNMNMHGRIAVCGM 256 (345)
T ss_dssp TCEEEEEESS-----CH----HHHHHHHTTEEEEEEEEECCC
T ss_pred CCCcEEEECC-----CH----HHHHHHHHHHhcCCEEEEEcc
Confidence 1 37776432 22 257888999999999998743
No 357
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=81.85 E-value=5.4 Score=32.62 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=50.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCC----CCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCH
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCF----ICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTD 139 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~ 139 (244)
++..|+-+|||.|.....|.+.+|+ ++ .+++|. +.. ...+..++|.++. .. ++
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ik-WvLiDPap~~-~~l~~~~NV~li~----------------~f---vd- 117 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIK-WMLIDGRHHD-PILNGLRDVTLVT----------------RF---VD- 117 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCE-EEEEESSCCC-GGGTTCTTEEEEE----------------CC---CC-
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeE-EEEEcCCcch-hhhcCCCcEEEEe----------------cc---CC-
Confidence 3579999999999999999988775 57 888896 321 1122224444433 22 22
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 140 DECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
+. -+++.++.+.....++|.|.-...
T Consensus 118 e~---dl~~l~~~~~~~~iLLISDIRS~r 143 (307)
T 3mag_A 118 EE---YLRSIKKQLHPSKIILISDVRSKR 143 (307)
T ss_dssp HH---HHHHHHHHHTTSCEEEEECCCC--
T ss_pred HH---HHHHHHHhccCCCEEEEEEecCCC
Confidence 22 245566666778888888876553
No 358
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=81.75 E-value=1.5 Score=36.57 Aligned_cols=123 Identities=11% Similarity=-0.002 Sum_probs=74.6
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC----CCcceEEEeccccccCCH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS----IHVVDAIFMKWVLTTWTD 139 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~----~p~~D~v~~~~~lh~~~~ 139 (244)
..+++|+.||.|.+...+.+.. .+.+.++|. +..++..+.+ +... .+|+.+- ++..|+++...-+..++.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 3689999999999999999875 442567888 7666655543 2222 5777543 344699998766655541
Q ss_pred --------HHHHHH---HHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh
Q 041308 140 --------DECKLI---MENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS 208 (244)
Q Consensus 140 --------~~~~~~---l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~ 208 (244)
+..-.+ +-++.+.++| +++++|.+..-. . .....+.+.+.+.|++
T Consensus 87 ag~~~g~~d~r~~L~~~~~r~i~~~~P--~~~~~ENV~gl~-------------~---------~~~~~~~~~i~~~l~~ 142 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIARIVREKKP--KVVFMENVKNFA-------------S---------HDNGNTLEVVKNTMNE 142 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHHHHHHHCC--SEEEEEEEGGGG-------------T---------GGGGHHHHHHHHHHHH
T ss_pred hcccCCCcchhhHHHHHHHHHHHhccC--cEEEEeCcHHHH-------------h---------ccccHHHHHHHHHHHh
Confidence 111123 2334455677 466777653211 0 0011235677888889
Q ss_pred CCCCeEEE
Q 041308 209 TGFPHLRA 216 (244)
Q Consensus 209 aGf~~~~~ 216 (244)
.|+.+...
T Consensus 143 ~GY~v~~~ 150 (327)
T 2c7p_A 143 LDYSFHAK 150 (327)
T ss_dssp TTBCCEEE
T ss_pred CCCEEEEE
Confidence 99886553
No 359
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=80.97 E-value=7 Score=29.53 Aligned_cols=93 Identities=9% Similarity=0.098 Sum_probs=54.3
Q ss_pred eEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCC----CcceEEEeccccccCCHH
Q 041308 68 RLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSI----HVVDAIFMKWVLTTWTDD 140 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~----p~~D~v~~~~~lh~~~~~ 140 (244)
+||=.| |+|.+...+++.. .+.+ +++++. +.-.+... ++++++.+|+.+.- ...|+|+.......-...
T Consensus 2 kvlVtG-atG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~ 77 (221)
T 3ew7_A 2 KIGIIG-ATGRAGSRILEEAKNRGHE-VTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAE 77 (221)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCE-EEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTT
T ss_pred eEEEEc-CCchhHHHHHHHHHhCCCE-EEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcCCccccc
Confidence 455444 4566666655543 2356 888887 55444333 68899999997652 224888765443221222
Q ss_pred HHHHHHHHHHHHcCC--CCEEEEecc
Q 041308 141 ECKLIMENYYKALLA--GRKLIACEP 164 (244)
Q Consensus 141 ~~~~~l~~~~~~L~p--gG~lii~d~ 164 (244)
......+++.++++. .++++++-.
T Consensus 78 ~~~~~~~~l~~a~~~~~~~~~v~~SS 103 (221)
T 3ew7_A 78 KHVTSLDHLISVLNGTVSPRLLVVGG 103 (221)
T ss_dssp SHHHHHHHHHHHHCSCCSSEEEEECC
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEec
Confidence 234556667777765 467777654
No 360
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=80.92 E-value=0.88 Score=37.85 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=38.7
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPS 107 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~ 107 (244)
++.+++.+. .++..|||.=||+|..+.+..+.. -+ ++++|+ +...+.+++
T Consensus 242 ~~~~i~~~~--~~~~~VlDpF~GsGtt~~aa~~~g--r~-~ig~e~~~~~~~~~~~ 292 (323)
T 1boo_A 242 PEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERES--RK-WISFEMKPEYVAASAF 292 (323)
T ss_dssp HHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHTT--CE-EEEEESCHHHHHHHHG
T ss_pred HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--CC-EEEEeCCHHHHHHHHH
Confidence 445555442 456899999999999999988764 45 999999 888877765
No 361
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=80.51 E-value=3 Score=34.56 Aligned_cols=93 Identities=17% Similarity=0.087 Sum_probs=58.2
Q ss_pred CCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe---CCCCCCC----Cc--ceEEEec
Q 041308 63 FKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG---GDMFKSI----HV--VDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~---gd~~~~~----p~--~D~v~~~ 131 (244)
.++..+||=+|+|. |.++..+++..-..+ ++++|. ++-++.+++..--.++. .|..+.+ .. .|.++..
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~-Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~ 239 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAK-VIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVC 239 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCE-EEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEEC
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCE-EEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEe
Confidence 67788999999885 456666777666678 999998 76666666542222221 2221111 11 2555533
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.. . ...+....+.|+|||+++++-.
T Consensus 240 ~~-----~---~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 240 AV-----A---RIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp CS-----C---HHHHHHHHHTEEEEEEEEECCC
T ss_pred cc-----C---cchhheeheeecCCceEEEEec
Confidence 22 1 2457888899999999998753
No 362
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=80.48 E-value=6.8 Score=32.65 Aligned_cols=97 Identities=12% Similarity=-0.030 Sum_probs=59.9
Q ss_pred ccCCCCCCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeC-----CCCCC----C-C
Q 041308 58 DGYDGFKGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGG-----DMFKS----I-H 123 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~g-----d~~~~----~-p 123 (244)
+... .+++.+||=+|+|. |.++..+++...--+ ++++|. +.-.+.+++. .-+.+... |+.+. . +
T Consensus 173 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~-Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g 250 (363)
T 3m6i_A 173 QRAG-VRLGDPVLICGAGPIGLITMLCAKAAGACP-LVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGG 250 (363)
T ss_dssp HHHT-CCTTCCEEEECCSHHHHHHHHHHHHTTCCS-EEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSS
T ss_pred HHcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCC
Confidence 3444 67789999999874 888889998764334 788886 6666655542 12222211 11110 1 1
Q ss_pred c-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 V-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 ~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
. .|+|+-.. ..+ ..++.+.+.|+|||+++++-.
T Consensus 251 ~g~Dvvid~~-----g~~---~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 251 IEPAVALECT-----GVE---SSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp CCCSEEEECS-----CCH---HHHHHHHHHSCTTCEEEECCC
T ss_pred CCCCEEEECC-----CCh---HHHHHHHHHhcCCCEEEEEcc
Confidence 1 38777432 222 457888899999999998754
No 363
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=80.32 E-value=12 Score=28.33 Aligned_cols=93 Identities=11% Similarity=-0.045 Sum_probs=55.2
Q ss_pred eEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-C---CcceEEEecccccc--CC
Q 041308 68 RLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-I---HVVDAIFMKWVLTT--WT 138 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~---p~~D~v~~~~~lh~--~~ 138 (244)
+||=.| |+|.+...+++.. .+.+ +++++. +.-.+... ..+++++.+|+.+. . ...|+|+....... -.
T Consensus 2 kilVtG-atG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~ 78 (224)
T 3h2s_A 2 KIAVLG-ATGRAGSAIVAEARRRGHE-VLAVVRDPQKAADRL-GATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGR 78 (224)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHT-CTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSC
T ss_pred EEEEEc-CCCHHHHHHHHHHHHCCCE-EEEEEeccccccccc-CCCceEEecccccccHhhcccCCEEEECCccCCCcch
Confidence 355454 5666666666543 2346 888887 54444332 26889999999765 2 22488876544321 11
Q ss_pred HHHHHHHHHHHHHHcCC-CCEEEEec
Q 041308 139 DDECKLIMENYYKALLA-GRKLIACE 163 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~p-gG~lii~d 163 (244)
........+++.++++. |++++++-
T Consensus 79 ~~~n~~~~~~l~~a~~~~~~~~v~~S 104 (224)
T 3h2s_A 79 GYLHLDFATHLVSLLRNSDTLAVFIL 104 (224)
T ss_dssp THHHHHHHHHHHHTCTTCCCEEEEEC
T ss_pred hhHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 22345567778887775 57777764
No 364
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=79.43 E-value=4.4 Score=34.49 Aligned_cols=92 Identities=13% Similarity=0.005 Sum_probs=55.9
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-C--------Cc--ceEE
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-I--------HV--VDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~--------p~--~D~v 128 (244)
.+++.+||=+|+| .|..+..+++.. +. + ++++|. +.-++.+++..--.++ |..++ + +. .|+|
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~-Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~i~~~t~g~g~D~v 286 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHA-GASK-VILSEPSEVRRNLAKELGADHVI--DPTKENFVEAVLDYTNGLGAKLF 286 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSE-EEEECSCHHHHHHHHHHTCSEEE--CTTTSCHHHHHHHHTTTCCCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCE-EEEECCCHHHHHHHHHcCCCEEE--cCCCCCHHHHHHHHhCCCCCCEE
Confidence 6778899999986 478888888875 45 6 899987 7777766653221222 22111 1 11 3877
Q ss_pred EeccccccCCHHHHHHHHHHHHHHc----CCCCEEEEeccc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKAL----LAGRKLIACEPV 165 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L----~pgG~lii~d~~ 165 (244)
+-.- ..+. ..+..+.++| +|||+++++-..
T Consensus 287 id~~-----g~~~--~~~~~~~~~l~~~~~~~G~iv~~G~~ 320 (404)
T 3ip1_A 287 LEAT-----GVPQ--LVWPQIEEVIWRARGINATVAIVARA 320 (404)
T ss_dssp EECS-----SCHH--HHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred EECC-----CCcH--HHHHHHHHHHHhccCCCcEEEEeCCC
Confidence 7332 2221 2344444455 999999997653
No 365
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=79.14 E-value=8 Score=31.91 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=58.4
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-C--------CcceEEEec
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-I--------HVVDAIFMK 131 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~--------p~~D~v~~~ 131 (244)
.++..+||-+|+| .|..+..+++.. +.+ ++++|. +.-++.+++..--.++ |..+. + ...|+|+-.
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~~~--d~~~~~~~~~~~~~~~~~d~vid~ 237 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAM-GLN-VVAVDIGDEKLELAKELGADLVV--NPLKEDAAKFMKEKVGGVHAAVVT 237 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHT-TCE-EEEECSCHHHHHHHHHTTCSEEE--CTTTSCHHHHHHHHHSSEEEEEES
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHCCCCEEe--cCCCccHHHHHHHHhCCCCEEEEC
Confidence 6778899999975 588888888765 457 999997 7666666543211121 33221 1 123777643
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
.. .. ..++.+.+.|+|||+++++-.
T Consensus 238 ~g-----~~---~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 238 AV-----SK---PAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp SC-----CH---HHHHHHHHHEEEEEEEEECCC
T ss_pred CC-----CH---HHHHHHHHHhhcCCEEEEecc
Confidence 22 11 357888899999999998754
No 366
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=78.75 E-value=0.66 Score=38.75 Aligned_cols=92 Identities=11% Similarity=-0.084 Sum_probs=58.2
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHc-CCCCeEEEeec-hHHHHhCCCCCCeeEEe----CCCCCCC--C-cceEEEecc
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKH-CFICEGINFDL-PEVVAKAPSIPEVTHIG----GDMFKSI--H-VVDAIFMKW 132 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~-p~~~~~~~~D~-~~~i~~a~~~~~i~~~~----gd~~~~~--p-~~D~v~~~~ 132 (244)
. +..+||-+|+| .|..+..+++.. |+.+ ++++|. +.-.+.+++..--.++. .|..+.+ . ..|+|+-.-
T Consensus 169 ~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~ 246 (344)
T 2h6e_A 169 F-AEPVVIVNGIGGLAVYTIQILKALMKNIT-IVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLV 246 (344)
T ss_dssp C-SSCEEEEECCSHHHHHHHHHHHHHCTTCE-EEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHhcCCCE-EEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECC
Confidence 5 67899999986 478888888765 4678 999997 66666665431111111 1111111 1 238777442
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
- .+ ..++.+.+.|+|||+++++-.
T Consensus 247 g-----~~---~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 247 G-----TE---ETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp C-----CH---HHHHHHHHHEEEEEEEEECCC
T ss_pred C-----Ch---HHHHHHHHHhhcCCEEEEeCC
Confidence 2 12 357888999999999998754
No 367
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=78.15 E-value=15 Score=29.05 Aligned_cols=93 Identities=10% Similarity=-0.040 Sum_probs=54.0
Q ss_pred ceEEEEcCCccHHHHHHHHHcC--CCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCcceEEEeccccccCCHHHH
Q 041308 67 KRLVDVGGSAGDCLRIILQKHC--FICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~~~ 142 (244)
.+||=.| + |.++.++++..- +.+ +++++. +.-.+... ..+++++.+|+.+. +...|+|+.........+...
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~ 81 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWR-IIGTSRNPDQMEAIR-ASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVL 81 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCE-EEEEESCGGGHHHHH-HTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHH
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCE-EEEEEcChhhhhhHh-hCCCeEEEecccccccCCCCEEEECCCccccccHHH
Confidence 5789999 4 888888877642 345 888887 43332222 15789999998653 333588876554443333333
Q ss_pred HHHHHHHHHHcCCCCEEEEec
Q 041308 143 KLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii~d 163 (244)
..+++.+.+.-..-.+++.+.
T Consensus 82 ~~l~~a~~~~~~~~~~~v~~S 102 (286)
T 3ius_A 82 AALGDQIAARAAQFRWVGYLS 102 (286)
T ss_dssp HHHHHHHHHTGGGCSEEEEEE
T ss_pred HHHHHHHHhhcCCceEEEEee
Confidence 444444433212225666554
No 368
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=78.04 E-value=2.3 Score=35.33 Aligned_cols=98 Identities=8% Similarity=0.014 Sum_probs=58.5
Q ss_pred HhccCCCCCCcceEEEEcCC--ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC---CCCCC----CC--
Q 041308 56 VLDGYDGFKGVKRLVDVGGS--AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG---DMFKS----IH-- 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g---d~~~~----~p-- 123 (244)
+.+... .+++.+||-+|+| .|..+..+++.. +.+ ++++|. +.-++.+++...-.++.. |+.+. ..
T Consensus 136 ~~~~~~-~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~-Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~ 212 (340)
T 3gms_A 136 CTETLN-LQRNDVLLVNACGSAIGHLFAQLSQIL-NFR-LIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGI 212 (340)
T ss_dssp HHTTSC-CCTTCEEEESSTTSHHHHHHHHHHHHH-TCE-EEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred HHHhcc-cCCCCEEEEeCCccHHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCC
Confidence 344455 7788999999986 688888888765 457 888887 655555554321122211 11000 11
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
..|+++-+ ...+. +.+..+.|+|||+++++-..
T Consensus 213 g~Dvvid~-----~g~~~----~~~~~~~l~~~G~iv~~G~~ 245 (340)
T 3gms_A 213 GADAAIDS-----IGGPD----GNELAFSLRPNGHFLTIGLL 245 (340)
T ss_dssp CEEEEEES-----SCHHH----HHHHHHTEEEEEEEEECCCT
T ss_pred CCcEEEEC-----CCChh----HHHHHHHhcCCCEEEEEeec
Confidence 13877643 22232 23445799999999997653
No 369
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=77.54 E-value=2.5 Score=35.22 Aligned_cols=93 Identities=22% Similarity=0.133 Sum_probs=57.8
Q ss_pred CCCcceEEEEcCC--ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe-CC--CC---CC-C--CcceEEEe
Q 041308 63 FKGVKRLVDVGGS--AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG-GD--MF---KS-I--HVVDAIFM 130 (244)
Q Consensus 63 ~~~~~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~-gd--~~---~~-~--p~~D~v~~ 130 (244)
.++..+||-.|+| .|..+..+++...+.+ ++++|. +...+.+++...-.++. .+ .. .. . ...|+++-
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 246 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGAT-IIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVID 246 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCE-EEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEE
Confidence 6778999999987 6677777777654567 999987 66666554321111111 11 00 00 1 12377763
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..- .. ..++.+.+.|+|||+++++-.
T Consensus 247 ~~g-----~~---~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 247 LNN-----SE---KTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp SCC-----CH---HHHTTGGGGEEEEEEEEECCS
T ss_pred CCC-----CH---HHHHHHHHHHhcCCEEEEECC
Confidence 321 12 457888899999999998754
No 370
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=77.40 E-value=1.1 Score=36.71 Aligned_cols=92 Identities=13% Similarity=0.002 Sum_probs=55.8
Q ss_pred ccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCc-ceEEEeccccc
Q 041308 58 DGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHV-VDAIFMKWVLT 135 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~-~D~v~~~~~lh 135 (244)
+... .+++.+||=+|+| .|.++..+++.. +.+ +++++.+.-.+.+++..--.++ .| .+.++. .|+|+-.-
T Consensus 136 ~~~~-~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~-Vi~~~~~~~~~~~~~lGa~~v~-~d-~~~v~~g~Dvv~d~~--- 207 (315)
T 3goh_A 136 EKIP-LTKQREVLIVGFGAVNNLLTQMLNNA-GYV-VDLVSASLSQALAAKRGVRHLY-RE-PSQVTQKYFAIFDAV--- 207 (315)
T ss_dssp TTSC-CCSCCEEEEECCSHHHHHHHHHHHHH-TCE-EEEECSSCCHHHHHHHTEEEEE-SS-GGGCCSCEEEEECC----
T ss_pred hhcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCE-EEEEEChhhHHHHHHcCCCEEE-cC-HHHhCCCccEEEECC---
Confidence 4444 7788999999986 588888888875 457 8888754444444432211222 24 233433 38777321
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
..+ .+..+.+.|+|||+++++-
T Consensus 208 --g~~----~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 208 --NSQ----NAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp ------------TTGGGEEEEEEEEEEC
T ss_pred --Cch----hHHHHHHHhcCCCEEEEEe
Confidence 112 1356788999999999884
No 371
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=76.98 E-value=2.9 Score=34.73 Aligned_cols=90 Identities=13% Similarity=-0.012 Sum_probs=57.1
Q ss_pred CCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC--CCC---------cceEE
Q 041308 63 FKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK--SIH---------VVDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~--~~p---------~~D~v 128 (244)
.++..+||-+|+ |.|..+..+++.. +.+ ++++|. +...+.+++...-.+. |..+ .+. ..|++
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~-V~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~~~~D~v 242 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAM-GYR-VLGIDGGEGKEELFRSIGGEVFI--DFTKEKDIVGAVLKATDGGAHGV 242 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHT-TCE-EEEEECSTTHHHHHHHTTCCEEE--ETTTCSCHHHHHHHHHTSCEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCc-EEEEcCCHHHHHHHHHcCCceEE--ecCccHhHHHHHHHHhCCCCCEE
Confidence 677899999998 5777887777764 457 888886 5555555443211222 3321 111 13776
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+-... . ...++.+.+.|++||+++++-.
T Consensus 243 i~~~g-----~---~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 243 INVSV-----S---EAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp EECSS-----C---HHHHHHHTTSEEEEEEEEECCC
T ss_pred EECCC-----c---HHHHHHHHHHHhcCCEEEEEeC
Confidence 64322 1 1457888999999999998754
No 372
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=76.64 E-value=15 Score=30.20 Aligned_cols=86 Identities=10% Similarity=0.003 Sum_probs=55.2
Q ss_pred cceEEEEcCCccHHHHHHHHHcCC-CCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEecccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCF-ICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~ 136 (244)
..+++=+|+ |..+..+++...+ -. ++++|. ++.++ .++ ..+.++.||..++ + ..+|.+++..
T Consensus 115 ~~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~-~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~---- 185 (336)
T 1lnq_A 115 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDL---- 185 (336)
T ss_dssp -CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH-TTCEEEESCTTSHHHHHHTCSTTEEEEEECC----
T ss_pred cCCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh-CCcEEEEeCCCCHHHHHhcChhhccEEEEcC----
Confidence 357888886 6777777766532 34 778888 77776 443 6788999999765 2 2257777542
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
++++.-.......+.+.|..+++.
T Consensus 186 -~~d~~n~~~~~~ar~~~~~~~iia 209 (336)
T 1lnq_A 186 -ESDSETIHCILGIRKIDESVRIIA 209 (336)
T ss_dssp -SSHHHHHHHHHHHHTTCTTSEEEE
T ss_pred -CccHHHHHHHHHHHHHCCCCeEEE
Confidence 333333445556677888777665
No 373
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=76.63 E-value=2.3 Score=36.24 Aligned_cols=103 Identities=9% Similarity=-0.053 Sum_probs=59.4
Q ss_pred chHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEe-ec-hHHHHhCCCCCCeeEEeCCCCCCCCc-ceEE
Q 041308 52 FMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINF-DL-PEVVAKAPSIPEVTHIGGDMFKSIHV-VDAI 128 (244)
Q Consensus 52 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~-D~-~~~i~~a~~~~~i~~~~gd~~~~~p~-~D~v 128 (244)
.-+.|++.+.. ...+||.++-+-|.++..+. +..+ ++.+ |- +......+. .+.....+-.+..|. .|+|
T Consensus 34 ~~~~l~~~~~~--~~~~~l~~n~~~g~~~~~~~---~~~~-~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~d~v 105 (381)
T 3dmg_A 34 VHDLLQKTVEP--FGERALDLNPGVGWGSLPLE---GRMA-VERLETSRAAFRCLTAS--GLQARLALPWEAAAGAYDLV 105 (381)
T ss_dssp HHHHHHTTCCC--CSSEEEESSCTTSTTTGGGB---TTBE-EEEEECBHHHHHHHHHT--TCCCEECCGGGSCTTCEEEE
T ss_pred HHHHHHHHHHH--hCCcEEEecCCCCccccccC---CCCc-eEEEeCcHHHHHHHHHc--CCCccccCCccCCcCCCCEE
Confidence 33446666652 33699999999998877665 3334 4444 44 433332221 222111222223344 4888
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
++..-=+- ........|.++.+.|+|||.+++.-
T Consensus 106 ~~~~Pk~k-~~~~~~~~l~~~~~~l~~g~~i~~~g 139 (381)
T 3dmg_A 106 VLALPAGR-GTAYVQASLVAAARALRMGGRLYLAG 139 (381)
T ss_dssp EEECCGGG-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCcch-hHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 86533210 11346788999999999999998764
No 374
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=76.37 E-value=9.8 Score=31.48 Aligned_cols=93 Identities=12% Similarity=-0.067 Sum_probs=58.8
Q ss_pred ccCCCCCCcceEEEEcCC-ccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCCCCCeeEEeCCCCC-CC--------C--
Q 041308 58 DGYDGFKGVKRLVDVGGS-AGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPSIPEVTHIGGDMFK-SI--------H-- 123 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~-~~--------p-- 123 (244)
+... . +..+||-+|+| .|..+..+++.. +. + ++++|. +.-.+.+++..--.++ |..+ ++ +
T Consensus 162 ~~~~-~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~-Vi~~~~~~~~~~~~~~~Ga~~~~--~~~~~~~~~~v~~~~~g~ 235 (348)
T 2d8a_A 162 LAGP-I-SGKSVLITGAGPLGLLGIAVAKAS-GAYP-VIVSEPSDFRRELAKKVGADYVI--NPFEEDVVKEVMDITDGN 235 (348)
T ss_dssp TTSC-C-TTCCEEEECCSHHHHHHHHHHHHT-TCCS-EEEECSCHHHHHHHHHHTCSEEE--CTTTSCHHHHHHHHTTTS
T ss_pred HhcC-C-CCCEEEEECCCHHHHHHHHHHHHc-CCCE-EEEECCCHHHHHHHHHhCCCEEE--CCCCcCHHHHHHHHcCCC
Confidence 3444 5 77899999986 477888888765 45 7 888987 6666665542211122 2211 11 1
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..|+|+-..- . ...++.+.+.|+|||+++++-.
T Consensus 236 g~D~vid~~g-----~---~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 236 GVDVFLEFSG-----A---PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp CEEEEEECSC-----C---HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCCEEEECCC-----C---HHHHHHHHHHHhcCCEEEEEcc
Confidence 1387764322 1 2457888899999999998754
No 375
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=75.95 E-value=10 Score=29.92 Aligned_cols=91 Identities=8% Similarity=0.039 Sum_probs=52.5
Q ss_pred ceEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHH
Q 041308 67 KRLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECK 143 (244)
Q Consensus 67 ~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~ 143 (244)
.+|.=||+|. |. ++..+.+...+ . ++++|. +...+...+.-++.. ..|..+.+..+|+|++. .++....
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g~~-~-v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~Dvvi~a-----v~~~~~~ 82 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKGFR-I-VQVYSRTEESARELAQKVEAEY-TTDLAEVNPYAKLYIVS-----LKDSAFA 82 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCC-E-EEEECSSHHHHHHHHHHTTCEE-ESCGGGSCSCCSEEEEC-----CCHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCe-E-EEEEeCCHHHHHHHHHHcCCce-eCCHHHHhcCCCEEEEe-----cCHHHHH
Confidence 4788899872 33 34445544322 2 677787 655544433223333 23332334456988865 4555556
Q ss_pred HHHHHHHHHcCCCCEEEEeccc
Q 041308 144 LIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 144 ~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.+++++...++||..++..-..
T Consensus 83 ~v~~~l~~~~~~~~ivv~~s~~ 104 (266)
T 3d1l_A 83 ELLQGIVEGKREEALMVHTAGS 104 (266)
T ss_dssp HHHHHHHTTCCTTCEEEECCTT
T ss_pred HHHHHHHhhcCCCcEEEECCCC
Confidence 7788888888887766655443
No 376
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=75.01 E-value=2.6 Score=35.03 Aligned_cols=95 Identities=11% Similarity=0.000 Sum_probs=58.6
Q ss_pred ccCCCCCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCC--CCCC----CCc--ce
Q 041308 58 DGYDGFKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGD--MFKS----IHV--VD 126 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd--~~~~----~p~--~D 126 (244)
+... .+++.+||-+|+ |.|..+..+++.. +.+ +++++. +.-.+.+++...-.+...+ +.+. .+. .|
T Consensus 153 ~~~~-~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~-Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~D 229 (342)
T 4eye_A 153 RRGQ-LRAGETVLVLGAAGGIGTAAIQIAKGM-GAK-VIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVD 229 (342)
T ss_dssp TTSC-CCTTCEEEESSTTSHHHHHHHHHHHHT-TCE-EEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEE
T ss_pred HhcC-CCCCCEEEEECCCCHHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCce
Confidence 4444 677899999996 5788888888875 457 888887 6666655543221222222 1111 111 38
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+++-+-- . ..++.+.+.|+|||+++++-.
T Consensus 230 vvid~~g-----~----~~~~~~~~~l~~~G~iv~~G~ 258 (342)
T 4eye_A 230 MVVDPIG-----G----PAFDDAVRTLASEGRLLVVGF 258 (342)
T ss_dssp EEEESCC-----------CHHHHHHTEEEEEEEEEC--
T ss_pred EEEECCc-----h----hHHHHHHHhhcCCCEEEEEEc
Confidence 7764322 1 146778889999999998754
No 377
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=74.64 E-value=1.9 Score=36.09 Aligned_cols=125 Identities=14% Similarity=0.020 Sum_probs=78.2
Q ss_pred ceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC----CC--cceEEEeccccccCC
Q 041308 67 KRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS----IH--VVDAIFMKWVLTTWT 138 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~----~p--~~D~v~~~~~lh~~~ 138 (244)
-+++|+-||.|.+...+.+...+.+.+.++|. +..++.-+.+ +...+..+|+.+- ++ ..|+++...-+..++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS 83 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT 83 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence 48999999999999999987654342467888 7666655543 5556777888654 33 249998776665544
Q ss_pred --------HHHHHHHHHHHHHHcCC-C-CEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHh
Q 041308 139 --------DDECKLIMENYYKALLA-G-RKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFS 208 (244)
Q Consensus 139 --------~~~~~~~l~~~~~~L~p-g-G~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~ 208 (244)
++..-.++.++.+.++- . =+++++|.+..-. . + .+.+.+.+.|++
T Consensus 84 ~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~gl~-------------~----------~--~~~~~i~~~l~~ 138 (333)
T 4h0n_A 84 RNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKGFE-------------N----------S--TVRNLFIDKLKE 138 (333)
T ss_dssp ETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTTGG-------------G----------S--HHHHHHHHHHHH
T ss_pred hhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEecchhhh-------------h----------h--hHHHHHHHHHHh
Confidence 11122345555555432 1 3677777653211 0 0 124567888899
Q ss_pred CCCCeEEE
Q 041308 209 TGFPHLRA 216 (244)
Q Consensus 209 aGf~~~~~ 216 (244)
.|+.+...
T Consensus 139 ~GY~v~~~ 146 (333)
T 4h0n_A 139 CNFIYQEF 146 (333)
T ss_dssp TTEEEEEE
T ss_pred CCCeEEEE
Confidence 99887654
No 378
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=74.63 E-value=2 Score=35.70 Aligned_cols=55 Identities=9% Similarity=-0.052 Sum_probs=36.8
Q ss_pred CCeeEEeCCCCCC---CCc--ceEEEeccccccC-----C-------HHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 109 PEVTHIGGDMFKS---IHV--VDAIFMKWVLTTW-----T-------DDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 109 ~~i~~~~gd~~~~---~p~--~D~v~~~~~lh~~-----~-------~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+..++.||..+. ++. .|+|++.--...- . .......+++++++|+|||.+++.-
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~ 84 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 84 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence 4677788887542 443 3888877443221 1 1135678999999999999998853
No 379
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=74.40 E-value=10 Score=30.13 Aligned_cols=85 Identities=15% Similarity=0.049 Sum_probs=48.9
Q ss_pred eEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHHHH
Q 041308 68 RLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDECKL 144 (244)
Q Consensus 68 ~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~~~ 144 (244)
+|.=||+|. |. ++..+.+. +.+ ++++|. +..++.+++..-......|..+ ...+|+|++. .++.....
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~--g~~-V~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~D~vi~a-----v~~~~~~~ 72 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRR--GHY-LIGVSRQQSTCEKAVERQLVDEAGQDLSL-LQTAKIIFLC-----TPIQLILP 72 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCE-EEEECSCHHHHHHHHHTTSCSEEESCGGG-GTTCSEEEEC-----SCHHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHC--CCE-EEEEECCHHHHHHHHhCCCCccccCCHHH-hCCCCEEEEE-----CCHHHHHH
Confidence 466788763 22 34444443 236 888898 6655554332111112233322 2346988866 45556677
Q ss_pred HHHHHHHHcCCCCEEEE
Q 041308 145 IMENYYKALLAGRKLIA 161 (244)
Q Consensus 145 ~l~~~~~~L~pgG~lii 161 (244)
+++++...++||..++.
T Consensus 73 ~~~~l~~~~~~~~~vv~ 89 (279)
T 2f1k_A 73 TLEKLIPHLSPTAIVTD 89 (279)
T ss_dssp HHHHHGGGSCTTCEEEE
T ss_pred HHHHHHhhCCCCCEEEE
Confidence 88888888888776554
No 380
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=73.86 E-value=27 Score=30.58 Aligned_cols=98 Identities=13% Similarity=0.036 Sum_probs=56.1
Q ss_pred cceEEEEcCCccHH--HHHHHHHcCCC-CeEEEeec-hH----HHHhCCCC---------------------CCeeEEeC
Q 041308 66 VKRLVDVGGSAGDC--LRIILQKHCFI-CEGINFDL-PE----VVAKAPSI---------------------PEVTHIGG 116 (244)
Q Consensus 66 ~~~vLDvG~G~G~~--~~~l~~~~p~~-~~~~~~D~-~~----~i~~a~~~---------------------~~i~~~~g 116 (244)
..+|-=||+|.=.. +..+++. |+. + ++++|. +. .++..++. .++.+ ..
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~-~G~~~-V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~-tt 94 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADA-PCFEK-VLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC-TP 94 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHS-TTCCE-EEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE-ES
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-CCCCe-EEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE-eC
Confidence 46788899885333 3444443 345 7 999998 76 55544431 22333 22
Q ss_pred CCCCCCCcceEEEecccccc-------CCHHHHHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 117 DMFKSIHVVDAIFMKWVLTT-------WTDDECKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 117 d~~~~~p~~D~v~~~~~lh~-------~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
| .+.+..+|+|++.---.. ..-.......+.+.+.|+||..++. ..+.+.
T Consensus 95 d-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~p 151 (478)
T 3g79_A 95 D-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVL-ESTITP 151 (478)
T ss_dssp C-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEE-CSCCCT
T ss_pred c-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEE-eCCCCh
Confidence 3 222444698887643321 2223456678899999999775554 444443
No 381
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=73.67 E-value=2.8 Score=36.40 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=37.3
Q ss_pred cCchHHHHHHHHHHcccccchHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcC-----CCCeEEEeec
Q 041308 33 KKPKMNGLMRKAMSRVFVPFMTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHC-----FICEGINFDL 98 (244)
Q Consensus 33 ~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-----~~~~~~~~D~ 98 (244)
-.|++...|-+....+...+.+. . +..+|+|+|+|+|.++..+++... ..+ +++++.
T Consensus 113 TAPeiS~~FGe~la~~~~~~~~~----~----g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~-y~iVE~ 174 (432)
T 4f3n_A 113 TAPELSPLFAQTLARPVAQALDA----S----GTRRVMEFGAGTGKLAAGLLTALAALGVELDE-YAIVDL 174 (432)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHH----H----TCCEEEEESCTTSHHHHHHHHHHHHTTCCCSE-EEEECT
T ss_pred CchhhhHHHHHHHHHHHHHHHHh----c----CCCeEEEeCCCccHHHHHHHHHHHhcCCCCce-EEEEEc
Confidence 35667777777665433222221 1 146999999999999999886532 125 888887
No 382
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=73.54 E-value=8.3 Score=33.82 Aligned_cols=92 Identities=18% Similarity=0.156 Sum_probs=53.6
Q ss_pred ceEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C------------CeeEEeCCCCCCCCcc
Q 041308 67 KRLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSI------P------------EVTHIGGDMFKSIHVV 125 (244)
Q Consensus 67 ~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~------------~i~~~~gd~~~~~p~~ 125 (244)
.+|.=||+|. |. ++..|++.+++.+ ++++|. +..++..++. + ++.+ ..|..+.+..+
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~-V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~-t~~~~~~~~~a 87 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHIT-VTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFF-SSDIPKAIAEA 87 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSE-EEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE-ESCHHHHHHHC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE-ECCHHHHhhcC
Confidence 5788999984 33 4666777655667 999998 7777665542 1 1222 11211112235
Q ss_pred eEEEecc--ccc--------cCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 126 DAIFMKW--VLT--------TWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 126 D~v~~~~--~lh--------~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
|+|+++- -.+ ...-.....+++.+.+.|+||..++
T Consensus 88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV 132 (481)
T 2o3j_A 88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVV 132 (481)
T ss_dssp SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred CEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEE
Confidence 8888763 221 1111235677888999998865444
No 383
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=72.65 E-value=7 Score=32.15 Aligned_cols=90 Identities=18% Similarity=0.042 Sum_probs=58.6
Q ss_pred CCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCC---------Cc-ceEEE
Q 041308 63 FKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSI---------HV-VDAIF 129 (244)
Q Consensus 63 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~---------p~-~D~v~ 129 (244)
.++..+||-+|+ |.|..+..+++.. +.+ +++++. +.-++.+++...-.++..+- +++ +. .|+++
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~-Vi~~~~~~~~~~~~~~~ga~~~~~~~~-~~~~~~~~~~~~~~g~D~vi 222 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMK-GAH-TIAVASTDEKLKIAKEYGAEYLINASK-EDILRQVLKFTNGKGVDASF 222 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTTCSEEEETTT-SCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHcCCcEEEeCCC-chHHHHHHHHhCCCCceEEE
Confidence 677899999994 5788888888764 567 999998 77766666543222222111 111 11 38776
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
-+.- . ..++.+.+.|+|||+++++-.
T Consensus 223 d~~g-----~----~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 223 DSVG-----K----DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp ECCG-----G----GGHHHHHHHEEEEEEEEECCC
T ss_pred ECCC-----h----HHHHHHHHHhccCCEEEEEcC
Confidence 4322 1 246778889999999998754
No 384
>1vpt_A VP39; RNA CAP, poly(A) polymerase, methyltransferase; HET: SAM; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1vp3_A*
Probab=72.54 E-value=13 Score=30.72 Aligned_cols=79 Identities=13% Similarity=0.147 Sum_probs=53.2
Q ss_pred cceEEEEcCCccHHHHHHHHHcCC----CCeEEEeechHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHH
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCF----ICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~ 141 (244)
+..|+-+|++.|.....|.+.+|+ ++ .+.+|........+..++|+++.. + ++++
T Consensus 76 g~~VVYaGsAPG~HI~fL~~lF~~l~~~lk-wvLiDp~~f~~~Le~~~ni~li~~-f------------------fde~- 134 (348)
T 1vpt_A 76 GATVVYIGSAPGTHIRYLRDHFYNLGVIIK-WMLIDGRHHDPILNGLRDVTLVTR-F------------------VDEE- 134 (348)
T ss_dssp TCEEEEESCSSCHHHHHHHHHHHHTTCCCE-EEEEESSCCCGGGTTCTTEEEEEC-C------------------CCHH-
T ss_pred CCeEEEeCcCCcchHHHHHHHhhhcCCceE-EEEECCCchhhhhcCCCcEEeehh-h------------------cCHH-
Confidence 359999999999999998888775 67 999997333344444456766552 2 2222
Q ss_pred HHHHHHHHHHHcCCCCEEEEecccCCC
Q 041308 142 CKLIMENYYKALLAGRKLIACEPVLPD 168 (244)
Q Consensus 142 ~~~~l~~~~~~L~pgG~lii~d~~~~~ 168 (244)
-++.++..+.+-..++|.|.-..+
T Consensus 135 ---~i~~l~~~~~~~~vLfISDIRS~~ 158 (348)
T 1vpt_A 135 ---YLRSIKKQLHPSKIILISDVASAA 158 (348)
T ss_dssp ---HHHHHHHHHTTSCEEEEECCCC--
T ss_pred ---HHHHHHHHhcCCCEEEEEecccCC
Confidence 345666667777888888875433
No 385
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=71.96 E-value=10 Score=32.21 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=50.0
Q ss_pred CcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC--CCeeEEeCCCCCCCCcceEEEe-ccccccCCH
Q 041308 65 GVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAPSI--PEVTHIGGDMFKSIHVVDAIFM-KWVLTTWTD 139 (244)
Q Consensus 65 ~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~--~~i~~~~gd~~~~~p~~D~v~~-~~~lh~~~~ 139 (244)
.+.+|+-.|+|+ |......+...++.- ..++|. |.- ..+-. .++.++.-+.+... ..|.|++ .+..
T Consensus 318 ~gk~v~~yGa~~~g~~l~~~~~~~~~~i-~~~~D~~~~k--~g~~~~g~~ipi~~p~~~~~~-~~d~vl~~~~~~----- 388 (416)
T 4e2x_A 318 EGRSVVGYGATAKSATVTNFCGIGPDLV-HSVYDTTPDK--QNRLTPGAHIPVRPASAFSDP-YPDYALLFAWNH----- 388 (416)
T ss_dssp TTCCEEEECCCSHHHHHHHHHTCCTTTS-CCEEESCGGG--TTEECTTTCCEEEEGGGCCSS-CCSEEEESCGGG-----
T ss_pred cCCeEEEEccccHHHHHHHhcCCCccee-eEEEeCCccc--cCccCCCCCCcCCCHHHHhhc-CCCEEEEecchh-----
Confidence 457899999875 444555555444432 345676 432 22222 34777765443331 2365444 3322
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEe
Q 041308 140 DECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
...+++++...+.-||++++.
T Consensus 389 --~~ei~~~~~~~~~~g~~~~~~ 409 (416)
T 4e2x_A 389 --AEEIMAKEQEFHQAGGRWILY 409 (416)
T ss_dssp --HHHHHHHCHHHHHTTCEEEEC
T ss_pred --HHHHHHHHHHHHhcCCEEEEE
Confidence 246778888888899999984
No 386
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=71.92 E-value=5.1 Score=32.36 Aligned_cols=87 Identities=9% Similarity=-0.012 Sum_probs=51.8
Q ss_pred ceEEEEcCCc--cHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHH
Q 041308 67 KRLVDVGGSA--GDCLRIILQKHC-FICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 67 ~~vLDvG~G~--G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
.+|.=||||. +.++..+.+... ..+ +++.|. +...+..++.-.+... .|..+....+|+|++.- ++...
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~-V~v~dr~~~~~~~l~~~~gi~~~-~~~~~~~~~aDvVilav-----~p~~~ 76 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIANGYDPNR-ICVTNRSLDKLDFFKEKCGVHTT-QDNRQGALNADVVVLAV-----KPHQI 76 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHTTCCGGG-EEEECSSSHHHHHHHHTTCCEEE-SCHHHHHSSCSEEEECS-----CGGGH
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCCCCe-EEEEeCCHHHHHHHHHHcCCEEe-CChHHHHhcCCeEEEEe-----CHHHH
Confidence 5678889873 234555555432 225 889998 6666555443244432 22211233469888763 55566
Q ss_pred HHHHHHHHHH-cCCCCEEE
Q 041308 143 KLIMENYYKA-LLAGRKLI 160 (244)
Q Consensus 143 ~~~l~~~~~~-L~pgG~li 160 (244)
..+++++... ++++-.++
T Consensus 77 ~~vl~~l~~~~l~~~~iii 95 (280)
T 3tri_A 77 KMVCEELKDILSETKILVI 95 (280)
T ss_dssp HHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHhhccCCCeEEE
Confidence 7889999888 87765555
No 387
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=71.11 E-value=3.5 Score=33.91 Aligned_cols=98 Identities=10% Similarity=-0.032 Sum_probs=60.5
Q ss_pred HhccCCCCCCcceEEEEc--CCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC---C----CC--
Q 041308 56 VLDGYDGFKGVKRLVDVG--GSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK---S----IH-- 123 (244)
Q Consensus 56 l~~~~~~~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~---~----~p-- 123 (244)
+.+... .++..+||-+| +|.|..+..+++.. +.+ +++++. +.-++.+++...-.++..+-.+ . ..
T Consensus 132 l~~~~~-~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~-Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~ 208 (325)
T 3jyn_A 132 LRQTYQ-VKPGEIILFHAAAGGVGSLACQWAKAL-GAK-LIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGK 208 (325)
T ss_dssp HHTTSC-CCTTCEEEESSTTSHHHHHHHHHHHHH-TCE-EEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTC
T ss_pred HHHhcC-CCCCCEEEEEcCCcHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCC
Confidence 334344 67789999998 45788888888765 457 888887 6666666543211222211101 0 11
Q ss_pred cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 124 VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 124 ~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
..|+++-+.- . ..+..+.+.|+|||+++++-..
T Consensus 209 g~Dvvid~~g-----~----~~~~~~~~~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 209 KCPVVYDGVG-----Q----DTWLTSLDSVAPRGLVVSFGNA 241 (325)
T ss_dssp CEEEEEESSC-----G----GGHHHHHTTEEEEEEEEECCCT
T ss_pred CceEEEECCC-----h----HHHHHHHHHhcCCCEEEEEecC
Confidence 1377764322 1 2467788899999999998653
No 388
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=70.95 E-value=6 Score=33.36 Aligned_cols=94 Identities=17% Similarity=-0.023 Sum_probs=58.7
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCC------CCCC----CC--cceEE
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGD------MFKS----IH--VVDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd------~~~~----~p--~~D~v 128 (244)
.+++.+||-+|+| .|..+..+++.....+ ++++|. +.-.+.+++..--.++..+ +.+. .+ ..|+|
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvv 271 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAEN-VIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFI 271 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSE-EEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCce-EEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEE
Confidence 4567899999965 6888888888753247 899997 7666666653221222221 1010 11 13877
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+-.-- .. ..++.+.+.|+|||+++++-..
T Consensus 272 id~~g-----~~---~~~~~~~~~l~~~G~iv~~G~~ 300 (380)
T 1vj0_A 272 LEATG-----DS---RALLEGSELLRRGGFYSVAGVA 300 (380)
T ss_dssp EECSS-----CT---THHHHHHHHEEEEEEEEECCCC
T ss_pred EECCC-----CH---HHHHHHHHHHhcCCEEEEEecC
Confidence 74321 11 3467888999999999987543
No 389
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=70.43 E-value=3 Score=34.60 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=38.3
Q ss_pred hHHHhccCCCCCCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-h---HHHHhCCC
Q 041308 53 MTSVLDGYDGFKGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-P---EVVAKAPS 107 (244)
Q Consensus 53 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~---~~i~~a~~ 107 (244)
++.+++.+. .++..|||.=||+|..+.+..+.. -+ ++++|+ + ..++.+++
T Consensus 232 ~~~~i~~~~--~~~~~vlDpF~GsGtt~~aa~~~~--r~-~ig~e~~~~~~~~~~~~~~ 285 (319)
T 1eg2_A 232 IERLVRALS--HPGSTVLDFFAGSGVTARVAIQEG--RN-SICTDAAPVFKEYYQKQLT 285 (319)
T ss_dssp HHHHHHHHS--CTTCEEEETTCTTCHHHHHHHHHT--CE-EEEEESSTHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEecCCCCCHHHHHHHHcC--Cc-EEEEECCccHHHHHHHHHH
Confidence 445555543 456899999999999999988874 35 999999 7 77776664
No 390
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=70.42 E-value=11 Score=31.73 Aligned_cols=91 Identities=11% Similarity=0.011 Sum_probs=56.3
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec--hH-HH-HhCCCC----CCeeEEeCCCCCCCCc-ceEEEeccccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL--PE-VV-AKAPSI----PEVTHIGGDMFKSIHV-VDAIFMKWVLT 135 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~--~~-~i-~~a~~~----~~i~~~~gd~~~~~p~-~D~v~~~~~lh 135 (244)
...+||.++.+.|.++..++...| . .+ -|. .. .+ ...+.+ +++++.. ..+..+. .|+|++...=
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~~~--~-~~-~ds~~~~~~~~~n~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~lpk- 110 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEHKP--Y-SI-GDSYISELATRENLRLNGIDESSVKFLD--STADYPQQPGVVLIKVPK- 110 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGGCC--E-EE-ESCHHHHHHHHHHHHHTTCCGGGSEEEE--TTSCCCSSCSEEEEECCS-
T ss_pred CCCCEEEECCCCCHHHHhhccCCc--e-EE-EhHHHHHHHHHHHHHHcCCCccceEecc--cccccccCCCEEEEEcCC-
Confidence 346899999999999998875422 2 22 252 11 11 111111 3466543 3344444 5988875442
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+-......|+++...|+||+.+++...
T Consensus 111 --~~~~l~~~L~~l~~~l~~~~~i~~~g~ 137 (375)
T 4dcm_A 111 --TLALLEQQLRALRKVVTSDTRIIAGAK 137 (375)
T ss_dssp --CHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred --CHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence 234567789999999999999987654
No 391
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1
Probab=70.37 E-value=8.5 Score=32.02 Aligned_cols=89 Identities=12% Similarity=0.008 Sum_probs=56.2
Q ss_pred CCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-----C----C--cceEE
Q 041308 63 FKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-----I----H--VVDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-----~----p--~~D~v 128 (244)
+++..+||-.|+ |.|..+..+++.. +.+ +++++. +.-.+.+++...-.+. |..+. + . ..|++
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~-Vi~~~~~~~~~~~~~~~ga~~~~--d~~~~~~~~~~~~~~~~~~~D~v 243 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAY-GLK-ILGTAGTEEGQKIVLQNGAHEVF--NHREVNYIDKIKKYVGEKGIDII 243 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTTCSEEE--ETTSTTHHHHHHHHHCTTCEEEE
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHC-CCE-EEEEeCChhHHHHHHHcCCCEEE--eCCCchHHHHHHHHcCCCCcEEE
Confidence 677899999996 5777888888764 467 888887 6665555443211122 22111 1 1 13777
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+-+.. . ..+..+.+.|+|||+++++-.
T Consensus 244 i~~~G-----~----~~~~~~~~~l~~~G~iv~~g~ 270 (351)
T 1yb5_A 244 IEMLA-----N----VNLSKDLSLLSHGGRVIVVGS 270 (351)
T ss_dssp EESCH-----H----HHHHHHHHHEEEEEEEEECCC
T ss_pred EECCC-----h----HHHHHHHHhccCCCEEEEEec
Confidence 64322 1 246778899999999998753
No 392
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=70.32 E-value=1.2 Score=37.30 Aligned_cols=94 Identities=16% Similarity=0.029 Sum_probs=56.4
Q ss_pred CCCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC----CCCCCC-CcceEEEeccccc
Q 041308 63 FKGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG----DMFKSI-HVVDAIFMKWVLT 135 (244)
Q Consensus 63 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g----d~~~~~-p~~D~v~~~~~lh 135 (244)
.+++.+||-+|+| .|..+..+++.. +.+ ++++|. +.-++.+++..--.++.. |+.+.+ ...|+|+-.---
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~- 253 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAM-GAE-TYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS- 253 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCE-EEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCC-
Confidence 6778999999975 588888888765 457 888886 655555543211122211 111112 224887744221
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
-+ . ..++.+.+.|+|||+++++-.
T Consensus 254 -~~-~---~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 254 -LT-D---IDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp -ST-T---CCTTTGGGGEEEEEEEEECCC
T ss_pred -Cc-H---HHHHHHHHHhcCCCEEEEecC
Confidence 00 1 234567789999999998654
No 393
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=70.10 E-value=15 Score=29.05 Aligned_cols=93 Identities=15% Similarity=-0.046 Sum_probs=51.7
Q ss_pred EEEEcCCccHHHHHHHHHc---CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--CC----cceEEEeccccccCC
Q 041308 69 LVDVGGSAGDCLRIILQKH---CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--IH----VVDAIFMKWVLTTWT 138 (244)
Q Consensus 69 vLDvG~G~G~~~~~l~~~~---p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~p----~~D~v~~~~~lh~~~ 138 (244)
||=. ||+|.++..+++.. ++.+ +++++. +.-.... ...+++++.+|+.++ +. ..|+|+........
T Consensus 3 ilVt-GatG~iG~~l~~~L~~~~g~~-V~~~~R~~~~~~~~-~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~- 78 (289)
T 3e48_A 3 IMLT-GATGHLGTHITNQAIANHIDH-FHIGVRNVEKVPDD-WRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHP- 78 (289)
T ss_dssp EEEE-TTTSHHHHHHHHHHHHTTCTT-EEEEESSGGGSCGG-GBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCCS-
T ss_pred EEEE-cCCchHHHHHHHHHhhCCCCc-EEEEECCHHHHHHh-hhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCcc-
Confidence 4444 45677766666553 3567 888887 4332211 126899999999764 22 24888755433222
Q ss_pred HHHHHHHHHHHHHHcCC-C-CEEEEeccc
Q 041308 139 DDECKLIMENYYKALLA-G-RKLIACEPV 165 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~p-g-G~lii~d~~ 165 (244)
........+++.++++. | ++++.+...
T Consensus 79 ~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~ 107 (289)
T 3e48_A 79 SFKRIPEVENLVYAAKQSGVAHIIFIGYY 107 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred chhhHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 22223344555555543 3 577776654
No 394
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=69.97 E-value=7 Score=32.54 Aligned_cols=87 Identities=9% Similarity=-0.049 Sum_probs=54.4
Q ss_pred ceEEEEcCC-ccHHH-HHHH-HHcCCCCeEEEeec-hH---HHHhCCCCCCeeEEeCCCCCC-CC-------cceEEEec
Q 041308 67 KRLVDVGGS-AGDCL-RIIL-QKHCFICEGINFDL-PE---VVAKAPSIPEVTHIGGDMFKS-IH-------VVDAIFMK 131 (244)
Q Consensus 67 ~~vLDvG~G-~G~~~-~~l~-~~~p~~~~~~~~D~-~~---~i~~a~~~~~i~~~~gd~~~~-~p-------~~D~v~~~ 131 (244)
.+||-+|+| .|.++ ..++ +.. +.++++++|. ++ -.+.+++.. .+.+ |..++ +. ..|+|+-.
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~lG-a~~v--~~~~~~~~~i~~~~gg~Dvvid~ 249 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEELD-ATYV--DSRQTPVEDVPDVYEQMDFIYEA 249 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHTT-CEEE--ETTTSCGGGHHHHSCCEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHcC-Cccc--CCCccCHHHHHHhCCCCCEEEEC
Confidence 899999975 57778 8888 654 3432888887 55 566665432 2322 33221 11 13777633
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
...+ ..++.+.+.|+|||+++++-..
T Consensus 250 -----~g~~---~~~~~~~~~l~~~G~iv~~g~~ 275 (357)
T 2b5w_A 250 -----TGFP---KHAIQSVQALAPNGVGALLGVP 275 (357)
T ss_dssp -----SCCH---HHHHHHHHHEEEEEEEEECCCC
T ss_pred -----CCCh---HHHHHHHHHHhcCCEEEEEeCC
Confidence 2222 3578889999999999987543
No 395
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=69.64 E-value=8.5 Score=30.90 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=49.5
Q ss_pred ceEEEEcC-Cc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHH
Q 041308 67 KRLVDVGG-SA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 67 ~~vLDvG~-G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
.+|.=||+ |. |. ++..+.+. +.+ ++++|. +...+..++. .+.. .+..+....+|+|++. .++...
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~--g~~-V~~~~r~~~~~~~~~~~-g~~~--~~~~~~~~~aDvVi~a-----v~~~~~ 80 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDS--AHH-LAAIEIAPEGRDRLQGM-GIPL--TDGDGWIDEADVVVLA-----LPDNII 80 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHS--SSE-EEEECCSHHHHHHHHHT-TCCC--CCSSGGGGTCSEEEEC-----SCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCE-EEEEECCHHHHHHHHhc-CCCc--CCHHHHhcCCCEEEEc-----CCchHH
Confidence 47888888 73 33 34444443 346 888897 6555444332 2221 1221223346988865 455667
Q ss_pred HHHHHHHHHHcCCCCEEEE
Q 041308 143 KLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii 161 (244)
..+++++...++||..++-
T Consensus 81 ~~v~~~l~~~l~~~~ivv~ 99 (286)
T 3c24_A 81 EKVAEDIVPRVRPGTIVLI 99 (286)
T ss_dssp HHHHHHHGGGSCTTCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEE
Confidence 7888888888888775554
No 396
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=69.36 E-value=1.1 Score=36.60 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=54.9
Q ss_pred CCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeC----CCCCCCCcceEEEeccccc
Q 041308 63 FKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGG----DMFKSIHVVDAIFMKWVLT 135 (244)
Q Consensus 63 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~g----d~~~~~p~~D~v~~~~~lh 135 (244)
.+++.+||-+|+ |.|..+..+++.. +.+ ++++|. +.-.+.+++..--.++.. |+.+.+...|+++- .-
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~-Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g-- 197 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLR-VLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VR-- 197 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCE-EEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CS--
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CC--
Confidence 456789999997 5788888888775 457 888887 655555543321112211 11111222487774 21
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
. ..++.+.+.|+|+|+++++-.
T Consensus 198 ~-------~~~~~~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 198 G-------KEVEESLGLLAHGGRLVYIGA 219 (302)
T ss_dssp C-------TTHHHHHTTEEEEEEEEEC--
T ss_pred H-------HHHHHHHHhhccCCEEEEEeC
Confidence 1 236788889999999988654
No 397
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=68.81 E-value=4.5 Score=35.65 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=47.5
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC----CCeeEEeCCCCCC-------------------
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI----PEVTHIGGDMFKS------------------- 121 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~----~~i~~~~gd~~~~------------------- 121 (244)
.-+++|+=||.|.+...+.+.. .+.+.++|. +...+.-+.+ +...+..+|+.+-
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG--~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~ 165 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIG--GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ 165 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTT--EEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhh
Confidence 3589999999999999998764 332466787 6555444332 4556677887431
Q ss_pred -CCcceEEEeccccccCC
Q 041308 122 -IHVVDAIFMKWVLTTWT 138 (244)
Q Consensus 122 -~p~~D~v~~~~~lh~~~ 138 (244)
.|..|+++...-+..|+
T Consensus 166 ~~~~~Dvl~gGpPCQ~FS 183 (482)
T 3me5_A 166 HIPEHDVLLAGFPCQPFS 183 (482)
T ss_dssp HSCCCSEEEEECCCCCC-
T ss_pred cCCCCCEEEecCCCcchh
Confidence 23459999877776666
No 398
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}
Probab=68.50 E-value=14 Score=30.37 Aligned_cols=90 Identities=10% Similarity=0.014 Sum_probs=57.9
Q ss_pred CCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC---------CC--cceEE
Q 041308 63 FKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS---------IH--VVDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~---------~p--~~D~v 128 (244)
+++..+||-+|+ |.|..+..+++.. +.+ ++++|. +.-++.+++..--.++ |..+. .. ..|++
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~-Vi~~~~~~~~~~~~~~~ga~~~~--d~~~~~~~~~~~~~~~~~~~d~v 239 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLF-GAR-VIATAGSEDKLRRAKALGADETV--NYTHPDWPKEVRRLTGGKGADKV 239 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHHTCSEEE--ETTSTTHHHHHHHHTTTTCEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHhcCCCEEE--cCCcccHHHHHHHHhCCCCceEE
Confidence 677899999997 6888888888765 457 888887 6666655432111122 22111 11 13877
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+-..- . ..++.+.+.|+|+|+++++-..
T Consensus 240 i~~~g-~--------~~~~~~~~~l~~~G~~v~~g~~ 267 (343)
T 2eih_A 240 VDHTG-A--------LYFEGVIKATANGGRIAIAGAS 267 (343)
T ss_dssp EESSC-S--------SSHHHHHHHEEEEEEEEESSCC
T ss_pred EECCC-H--------HHHHHHHHhhccCCEEEEEecC
Confidence 74432 1 2367788899999999987643
No 399
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=66.43 E-value=9.5 Score=33.16 Aligned_cols=96 Identities=13% Similarity=0.004 Sum_probs=50.3
Q ss_pred ceEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------------------CCeeEEeCCCCCCCCc
Q 041308 67 KRLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSI-------------------PEVTHIGGDMFKSIHV 124 (244)
Q Consensus 67 ~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------------------~~i~~~~gd~~~~~p~ 124 (244)
.+|.=||+|. |. ++..+++. +.+ ++++|. +..++..++. .++.+ ..|..+-+..
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~--G~~-V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~~~ 78 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL--GAN-VRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAVPE 78 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCE-EEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHGGG
T ss_pred CEEEEECcCHHHHHHHHHHHhc--CCE-EEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHHhc
Confidence 3567788763 22 33444443 345 999998 6655544321 12333 2222111334
Q ss_pred ceEEEecccccc-----CCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Q 041308 125 VDAIFMKWVLTT-----WTDDECKLIMENYYKALLAGRKLIACEPVLP 167 (244)
Q Consensus 125 ~D~v~~~~~lh~-----~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~ 167 (244)
+|+|++.---.. .+-.....+++.+.+.|++|-. ++.....+
T Consensus 79 aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~i-VV~~STv~ 125 (450)
T 3gg2_A 79 ADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYIL-IVTKSTVP 125 (450)
T ss_dssp CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEE-EEECSCCC
T ss_pred CCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCE-EEEeeeCC
Confidence 688886532210 0111567788999999988654 44444433
No 400
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=66.09 E-value=9.5 Score=31.58 Aligned_cols=87 Identities=13% Similarity=0.119 Sum_probs=55.4
Q ss_pred CcceEEEEc-C-CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCC--------Cc-ceEEEecc
Q 041308 65 GVKRLVDVG-G-SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSI--------HV-VDAIFMKW 132 (244)
Q Consensus 65 ~~~~vLDvG-~-G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~--------p~-~D~v~~~~ 132 (244)
++.+||=+| + |.|..+..+++.. +.+ +++++. +.-++.+++..--.++ |..+++ +. .|+|+-+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~vi--~~~~~~~~~~~~~~~~g~Dvv~d~- 224 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY-GLR-VITTASRNETIEWTKKMGADIVL--NHKESLLNQFKTQGIELVDYVFCT- 224 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCE-EEEECCSHHHHHHHHHHTCSEEE--CTTSCHHHHHHHHTCCCEEEEEES-
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHhcCCcEEE--ECCccHHHHHHHhCCCCccEEEEC-
Confidence 678999995 3 4688888888864 567 999998 7766666653211222 221221 11 3777643
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
...+ ..++.+.+.|+|||+++.+-
T Consensus 225 ----~g~~---~~~~~~~~~l~~~G~iv~~~ 248 (346)
T 3fbg_A 225 ----FNTD---MYYDDMIQLVKPRGHIATIV 248 (346)
T ss_dssp ----SCHH---HHHHHHHHHEEEEEEEEESS
T ss_pred ----CCch---HHHHHHHHHhccCCEEEEEC
Confidence 2222 45788889999999998753
No 401
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=65.58 E-value=6.2 Score=32.86 Aligned_cols=96 Identities=10% Similarity=-0.082 Sum_probs=58.9
Q ss_pred ccCCCCCCcceEEEEc--CCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC---CC----Cc-ce
Q 041308 58 DGYDGFKGVKRLVDVG--GSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK---SI----HV-VD 126 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~---~~----p~-~D 126 (244)
+... .++..+||-+| +|.|..+..+++.. +.+ ++++|. +.-.+.+++...-.++..+-.+ .+ +. .|
T Consensus 161 ~~~~-~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~D 237 (353)
T 4dup_A 161 QMAG-LTEGESVLIHGGTSGIGTTAIQLARAF-GAE-VYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVD 237 (353)
T ss_dssp TTTC-CCTTCEEEESSTTSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEE
T ss_pred HhcC-CCCCCEEEEEcCCCHHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCce
Confidence 3344 67789999995 35788888888765 567 999997 7666666543211222211100 01 11 37
Q ss_pred EEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 127 AIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 127 ~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+++-+-- .+ .+..+.+.|+|||+++++-..
T Consensus 238 vvid~~g-----~~----~~~~~~~~l~~~G~iv~~g~~ 267 (353)
T 4dup_A 238 IILDMIG-----AA----YFERNIASLAKDGCLSIIAFL 267 (353)
T ss_dssp EEEESCC-----GG----GHHHHHHTEEEEEEEEECCCT
T ss_pred EEEECCC-----HH----HHHHHHHHhccCCEEEEEEec
Confidence 7764322 21 467788899999999987543
No 402
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=64.13 E-value=14 Score=31.98 Aligned_cols=92 Identities=10% Similarity=0.050 Sum_probs=50.6
Q ss_pred cceEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-----------------CCeeEEeCCCCCCCCcc
Q 041308 66 VKRLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSI-----------------PEVTHIGGDMFKSIHVV 125 (244)
Q Consensus 66 ~~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-----------------~~i~~~~gd~~~~~p~~ 125 (244)
..+|-=||+|. |. ++..+++ +.+ ++++|. +..++..++. .++.+ ..|..+.+..+
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~---G~~-V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~-ttd~~ea~~~a 110 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ---NHE-VVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRA-TTDKHDAYRNA 110 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT---TSE-EEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEE-ESCHHHHHTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHc---CCe-EEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEE-EcCHHHHHhCC
Confidence 35788888873 22 2333332 456 999998 7776655431 13333 22221113346
Q ss_pred eEEEecccccc------CCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 126 DAIFMKWVLTT------WTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 126 D~v~~~~~lh~------~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
|+|++.---.. .+-......++.+.+ |+||..++...
T Consensus 111 DvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~S 153 (432)
T 3pid_A 111 DYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKS 153 (432)
T ss_dssp SEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECS
T ss_pred CEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeC
Confidence 88887532210 111246677888888 99977665433
No 403
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=63.47 E-value=2.8 Score=34.24 Aligned_cols=82 Identities=15% Similarity=0.044 Sum_probs=46.3
Q ss_pred HHHHHcCCCCeEEEeechHHHHhCCC-----CCCeeEE-eCCCCCC--CCcceEEEecc----ccccCC---HHH--HHH
Q 041308 82 IILQKHCFICEGINFDLPEVVAKAPS-----IPEVTHI-GGDMFKS--IHVVDAIFMKW----VLTTWT---DDE--CKL 144 (244)
Q Consensus 82 ~l~~~~p~~~~~~~~D~~~~i~~a~~-----~~~i~~~-~gd~~~~--~p~~D~v~~~~----~lh~~~---~~~--~~~ 144 (244)
.++.+.++-+ +.+++-+-.+..-+- .+..++. .+|+..+ ++.+|+|++.. .-||+. |.. ..-
T Consensus 157 ~~~~k~~g~~-vl~v~~~~~~p~k~v~wi~Pi~GAt~~~~lDfg~p~~~~k~DvV~SDMApn~sGh~yqQC~DHarii~L 235 (320)
T 2hwk_A 157 SFVSKLKGRT-VLVVGEKLSVPGKMVDWLSDRPEATFRARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSM 235 (320)
T ss_dssp HHHHTSSCSE-EEEEESCCCCTTSEEEEEESSTTCSEECCGGGCSCTTSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCcE-EEEEecccccCCceeEeeccCCCceeecccccCCccccCcCCEEEEcCCCCCCCccccccchHHHHHHH
Confidence 4455556655 666642322221111 2455666 6777766 33469999653 235522 221 112
Q ss_pred HHHHHHHHcCCCCEEEEecc
Q 041308 145 IMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 145 ~l~~~~~~L~pgG~lii~d~ 164 (244)
+++-+.+.|+|||.+++.-+
T Consensus 236 al~fA~~vLkPGGtfV~Kvy 255 (320)
T 2hwk_A 236 LTKKACLHLNPGGTCVSIGY 255 (320)
T ss_dssp THHHHGGGEEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCceEEEEEe
Confidence 46788899999999998544
No 404
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=63.18 E-value=8.4 Score=31.45 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=54.2
Q ss_pred eEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe-CC--CCCCC-Cc-ceEEEeccccccCCH
Q 041308 68 RLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG-GD--MFKSI-HV-VDAIFMKWVLTTWTD 139 (244)
Q Consensus 68 ~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~-gd--~~~~~-p~-~D~v~~~~~lh~~~~ 139 (244)
+||=+|+ |.|..+..+++.. +.+ +++++. +.-.+.+++..--.++. .+ ..+.+ +. .|+++-. ...
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~-----~g~ 221 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-GYQ-VAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDT-----VGD 221 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-TCC-EEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEES-----SCH
T ss_pred eEEEECCCcHHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEEC-----CCc
Confidence 5999985 5788999999875 558 999886 66666655431111111 11 11111 12 3776532 222
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 140 DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
..++.+.+.|+|+|+++++-.
T Consensus 222 ----~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 222 ----KVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp ----HHHHHHHHTEEEEEEEEECCC
T ss_pred ----HHHHHHHHHHhcCCEEEEEec
Confidence 268889999999999998754
No 405
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=63.12 E-value=31 Score=27.53 Aligned_cols=88 Identities=10% Similarity=-0.014 Sum_probs=50.7
Q ss_pred ceEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe--------C---C---CCCCCCcceEEE
Q 041308 67 KRLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG--------G---D---MFKSIHVVDAIF 129 (244)
Q Consensus 67 ~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~--------g---d---~~~~~p~~D~v~ 129 (244)
.+|.=||+|. |. ++..+++.. .+ ++++|. +..++..++. .+.... . + ..+.+..+|+|+
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g--~~-V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGG--ND-VTLIDQWPAHIEAIRKN-GLIADFNGEEVVANLPIFSPEEIDHQNEQVDLII 79 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CE-EEEECSCHHHHHHHHHH-CEEEEETTEEEEECCCEECGGGCCTTSCCCSEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhCC--Cc-EEEEECCHHHHHHHHhC-CEEEEeCCCeeEecceeecchhhcccCCCCCEEE
Confidence 3688899873 32 344454433 35 888898 6655544332 122211 0 1 111112458888
Q ss_pred eccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 130 MKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 130 ~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
+. .++.....+++++...++|+..++.+.
T Consensus 80 ~~-----v~~~~~~~v~~~l~~~l~~~~~iv~~~ 108 (316)
T 2ew2_A 80 AL-----TKAQQLDAMFKAIQPMITEKTYVLCLL 108 (316)
T ss_dssp EC-----SCHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred EE-----eccccHHHHHHHHHHhcCCCCEEEEec
Confidence 66 345556788889988898887776654
No 406
>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*
Probab=63.09 E-value=4.5 Score=35.31 Aligned_cols=90 Identities=16% Similarity=-0.018 Sum_probs=61.5
Q ss_pred cceEEEEcCCccHHHHHHHHHcCCCCeEEEeechHHHH-------hCCCCCCeeEEeCCCCCCCCcceEEEeccccccCC
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHCFICEGINFDLPEVVA-------KAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWT 138 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~-------~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~ 138 (244)
..+|.=||+|+=..+.++--+-.++. +++-=.+..+. .|++ +..++. ++.+-.+.+|+|++- +|
T Consensus 37 gK~IaVIGyGsQG~AqAlNLRDSGv~-V~Vglr~~s~~e~~~S~~~A~~-~Gf~v~--~~~eA~~~ADvV~~L-----~P 107 (491)
T 3ulk_A 37 GKKVVIVGCGAQGLNQGLNMRDSGLD-ISYALRKEAIAEKRASWRKATE-NGFKVG--TYEELIPQADLVINL-----TP 107 (491)
T ss_dssp TSEEEEESCSHHHHHHHHHHHHTTCE-EEEEECHHHHHTTCHHHHHHHH-TTCEEE--EHHHHGGGCSEEEEC-----SC
T ss_pred CCEEEEeCCChHhHHHHhHHHhcCCc-EEEEeCCCCcccccchHHHHHH-CCCEec--CHHHHHHhCCEEEEe-----CC
Confidence 58999999998888888777777777 54332244332 2222 444443 332224457998854 67
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 139 DDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+....+.+++...||||-.|.+.+-
T Consensus 108 D~~q~~vy~~I~p~lk~G~~L~faHG 133 (491)
T 3ulk_A 108 DKQHSDVVRTVQPLMKDGAALGYSHG 133 (491)
T ss_dssp GGGHHHHHHHHGGGSCTTCEEEESSC
T ss_pred hhhHHHHHHHHHhhCCCCCEEEecCc
Confidence 77777889999999999999999764
No 407
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=63.04 E-value=8.9 Score=31.15 Aligned_cols=87 Identities=5% Similarity=-0.044 Sum_probs=48.7
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe-CCCCCCCCcceEEEeccccccCCHHHH
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG-GDMFKSIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~-gd~~~~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
+.+++=||+| .|......++.+ +.+ +++.|. +.-.+.+.+ ..++... .+..+.+..+|+|+..--.|.+..+
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~~-G~~-V~~~d~~~~~~~~~~~-~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~~-- 231 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAAL-GAN-VKVGARSSAHLARITE-MGLVPFHTDELKEHVKDIDICINTIPSMILNQT-- 231 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHH-TTCEEEEGGGHHHHSTTCSEEEECCSSCCBCHH--
T ss_pred CCEEEEEcccHHHHHHHHHHHHC-CCE-EEEEECCHHHHHHHHH-CCCeEEchhhHHHHhhCCCEEEECCChhhhCHH--
Confidence 4799999975 344333333333 457 999998 544332222 1233222 1221114456999988777655432
Q ss_pred HHHHHHHHHHcCCCCEEEEec
Q 041308 143 KLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii~d 163 (244)
..+.+|||+.++-+-
T Consensus 232 ------~~~~mk~g~~lin~a 246 (300)
T 2rir_A 232 ------VLSSMTPKTLILDLA 246 (300)
T ss_dssp ------HHTTSCTTCEEEECS
T ss_pred ------HHHhCCCCCEEEEEe
Confidence 345789998776543
No 408
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=62.86 E-value=4.7 Score=33.16 Aligned_cols=121 Identities=18% Similarity=0.063 Sum_probs=74.5
Q ss_pred eEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC----CCcceEEEeccccccCC----
Q 041308 68 RLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS----IHVVDAIFMKWVLTTWT---- 138 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~----~p~~D~v~~~~~lh~~~---- 138 (244)
+|+|+=||.|.+...+.+.. .+-+.++|. +...+.-+.+-.-.++.+|+.+- +|..|+++...-+..|+
T Consensus 2 kvidLFsG~GG~~~G~~~aG--~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag~ 79 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGGS 79 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTT--CEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETTE
T ss_pred eEEEeCcCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCCC
Confidence 68999999999999998765 442356777 66655555443346778888653 45569988665554333
Q ss_pred -----HHHHHHHHH---HHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCC
Q 041308 139 -----DDECKLIME---NYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTG 210 (244)
Q Consensus 139 -----~~~~~~~l~---~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aG 210 (244)
|+ .-.++. ++.+.++| +++++|.+..-. ......+..++.+.|++.|
T Consensus 80 ~~g~~d~-R~~L~~~~~r~i~~~~P--k~~~~ENV~gl~----------------------~~~~~~~~~~i~~~l~~~G 134 (331)
T 3ubt_Y 80 LRGIDDP-RGKLFYEYIRILKQKKP--IFFLAENVKGMM----------------------AQRHNKAVQEFIQEFDNAG 134 (331)
T ss_dssp ECCTTCG-GGHHHHHHHHHHHHHCC--SEEEEEECCGGG----------------------GCTTSHHHHHHHHHHHHHT
T ss_pred ccCCCCc-hhHHHHHHHHHHhccCC--eEEEeeeecccc----------------------cccccchhhhhhhhhccCC
Confidence 32 223444 45555678 567777753211 0001123456777888899
Q ss_pred CCeEE
Q 041308 211 FPHLR 215 (244)
Q Consensus 211 f~~~~ 215 (244)
+.+..
T Consensus 135 Y~v~~ 139 (331)
T 3ubt_Y 135 YDVHI 139 (331)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 87654
No 409
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Probab=62.79 E-value=18 Score=29.90 Aligned_cols=90 Identities=8% Similarity=-0.034 Sum_probs=55.6
Q ss_pred CCCcceEEEEc--CCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC---------CC--cceEE
Q 041308 63 FKGVKRLVDVG--GSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS---------IH--VVDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~---------~p--~~D~v 128 (244)
+++..+||-.| +|.|..+..+++.. +.+ ++++|. +.-++.+++...-..+ |..+. .. ..|++
T Consensus 160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~-Vi~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~d~v 235 (354)
T 2j8z_A 160 VQAGDYVLIHAGLSGVGTAAIQLTRMA-GAI-PLVTAGSQKKLQMAEKLGAAAGF--NYKKEDFSEATLKFTKGAGVNLI 235 (354)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHHTCSEEE--ETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHcCCcEEE--ecCChHHHHHHHHHhcCCCceEE
Confidence 67788999998 45777888887764 457 888887 6665555432111111 21111 11 13777
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+-+-- .+ .++.+.+.|++||+++++-..
T Consensus 236 i~~~G-----~~----~~~~~~~~l~~~G~iv~~G~~ 263 (354)
T 2j8z_A 236 LDCIG-----GS----YWEKNVNCLALDGRWVLYGLM 263 (354)
T ss_dssp EESSC-----GG----GHHHHHHHEEEEEEEEECCCT
T ss_pred EECCC-----ch----HHHHHHHhccCCCEEEEEecc
Confidence 64322 11 356778899999999987643
No 410
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=62.74 E-value=9.2 Score=31.29 Aligned_cols=90 Identities=10% Similarity=-0.085 Sum_probs=56.0
Q ss_pred CCCcceEEEEc--CCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC---------C-Cc-ceEE
Q 041308 63 FKGVKRLVDVG--GSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS---------I-HV-VDAI 128 (244)
Q Consensus 63 ~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~---------~-p~-~D~v 128 (244)
.++..+||-.| +|.|..+..+++.. +.+ ++++|. +.-.+.+++...-.+. |..+. . .. .|++
T Consensus 138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~-V~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~D~v 213 (327)
T 1qor_A 138 IKPDEQFLFHAAAGGVGLIACQWAKAL-GAK-LIGTVGTAQKAQSALKAGAWQVI--NYREEDLVERLKEITGGKKVRVV 213 (327)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHH-TCE-EEEEESSHHHHHHHHHHTCSEEE--ETTTSCHHHHHHHHTTTCCEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHcCCCEEE--ECCCccHHHHHHHHhCCCCceEE
Confidence 67789999999 46777777777765 357 888887 6555555432111112 22111 1 11 3777
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
+-+.- . ..++.+.+.|++||+++++-..
T Consensus 214 i~~~g-----~----~~~~~~~~~l~~~G~iv~~g~~ 241 (327)
T 1qor_A 214 YDSVG-----R----DTWERSLDCLQRRGLMVSFGNS 241 (327)
T ss_dssp EECSC-----G----GGHHHHHHTEEEEEEEEECCCT
T ss_pred EECCc-----h----HHHHHHHHHhcCCCEEEEEecC
Confidence 64422 1 3468888999999999987543
No 411
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=62.61 E-value=2.5 Score=36.23 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=28.0
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAP 106 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~ 106 (244)
+.+|+=+|+| .|..+..+++... .+ ++++|. +...+.++
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~G-a~-V~v~D~~~~~~~~~~ 212 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLG-AI-VRAFDTRPEVKEQVQ 212 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-CE-EEEECSCGGGHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CE-EEEEcCCHHHHHHHH
Confidence 5799999987 5666666776654 57 999998 66555443
No 412
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=62.39 E-value=12 Score=30.33 Aligned_cols=87 Identities=9% Similarity=-0.048 Sum_probs=48.2
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe-CCCCCCCCcceEEEeccccccCCHHHH
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG-GDMFKSIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~-gd~~~~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
+.+|+=+|+| .|......++.+ +.+ +++.|. +.-.+.+++ ..++... .++.+.+..+|+|+..--.|.+..
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~~-G~~-V~~~dr~~~~~~~~~~-~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~--- 228 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAAL-GAK-VKVGARESDLLARIAE-MGMEPFHISKAAQELRDVDVCINTIPALVVTA--- 228 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHH-TTSEEEEGGGHHHHTTTCSEEEECCSSCCBCH---
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-CCE-EEEEECCHHHHHHHHH-CCCeecChhhHHHHhcCCCEEEECCChHHhCH---
Confidence 4789999976 344333334333 457 999998 544332222 1233322 111111445699998766655543
Q ss_pred HHHHHHHHHHcCCCCEEEEec
Q 041308 143 KLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii~d 163 (244)
+..+.+|||+.++-+-
T Consensus 229 -----~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 229 -----NVLAEMPSHTFVIDLA 244 (293)
T ss_dssp -----HHHHHSCTTCEEEECS
T ss_pred -----HHHHhcCCCCEEEEec
Confidence 2334689998776543
No 413
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*
Probab=61.80 E-value=20 Score=29.58 Aligned_cols=89 Identities=17% Similarity=0.071 Sum_probs=55.1
Q ss_pred CCCc--ceEEEEcC--CccHHHHHHHHHcCCC-CeEEEeec-hHHHHhCCC-CCCeeEEeCCCCCC-C--------C-cc
Q 041308 63 FKGV--KRLVDVGG--SAGDCLRIILQKHCFI-CEGINFDL-PEVVAKAPS-IPEVTHIGGDMFKS-I--------H-VV 125 (244)
Q Consensus 63 ~~~~--~~vLDvG~--G~G~~~~~l~~~~p~~-~~~~~~D~-~~~i~~a~~-~~~i~~~~gd~~~~-~--------p-~~ 125 (244)
.++. .+||-.|+ |.|..+..+++.. +. + ++++|. +.-.+.+++ ..--.++ |..+. + . ..
T Consensus 156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~-Vi~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~~~ 231 (357)
T 2zb4_A 156 ITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSR-VVGICGTHEKCILLTSELGFDAAI--NYKKDNVAEQLRESCPAGV 231 (357)
T ss_dssp CCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHTSCCSEEE--ETTTSCHHHHHHHHCTTCE
T ss_pred CCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCe-EEEEeCCHHHHHHHHHHcCCceEE--ecCchHHHHHHHHhcCCCC
Confidence 6677 89999996 5677777777764 45 6 888887 555554443 2111112 22211 1 1 13
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+++-+-- . ..++.+.+.|++||+++++-.
T Consensus 232 d~vi~~~G-----~----~~~~~~~~~l~~~G~iv~~G~ 261 (357)
T 2zb4_A 232 DVYFDNVG-----G----NISDTVISQMNENSHIILCGQ 261 (357)
T ss_dssp EEEEESCC-----H----HHHHHHHHTEEEEEEEEECCC
T ss_pred CEEEECCC-----H----HHHHHHHHHhccCcEEEEECC
Confidence 76663322 1 457888999999999998754
No 414
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=61.40 E-value=49 Score=24.80 Aligned_cols=135 Identities=9% Similarity=0.030 Sum_probs=66.1
Q ss_pred eEEEEcCCccHHHHHHHHHc---CCCCeEEEeec-hH-HHHhCC-CCCCeeEEeCCCCCC--CC----cceEEEeccccc
Q 041308 68 RLVDVGGSAGDCLRIILQKH---CFICEGINFDL-PE-VVAKAP-SIPEVTHIGGDMFKS--IH----VVDAIFMKWVLT 135 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~---p~~~~~~~~D~-~~-~i~~a~-~~~~i~~~~gd~~~~--~p----~~D~v~~~~~lh 135 (244)
+||=.| |+|.....+++.. .+.+ +++++. +. .++... ...++.++.+|+.+. +. ..|+++......
T Consensus 7 ~vlVtG-asg~iG~~~~~~l~~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~ 84 (221)
T 3r6d_A 7 YITILG-AAGQIAQXLTATLLTYTDMH-ITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES 84 (221)
T ss_dssp EEEEES-TTSHHHHHHHHHHHHHCCCE-EEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred EEEEEe-CCcHHHHHHHHHHHhcCCce-EEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence 466666 4455555554432 3456 888887 54 332221 347899999999764 22 238888654432
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccC-ceecCHHHHHHHHHhCCCCeE
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-GKHKTEQEFKQLGFSTGFPHL 214 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~t~~e~~~ll~~aGf~~~ 214 (244)
. -+...+++.+.+ ...|+++.+............... +.. . ... ....+....+.++++.|+...
T Consensus 85 n---~~~~~~~~~~~~--~~~~~iv~iSs~~~~~~~~~~~~~---~~~----~--~~~~~y~~~K~~~e~~~~~~~i~~~ 150 (221)
T 3r6d_A 85 G---SDMASIVKALSR--XNIRRVIGVSMAGLSGEFPVALEK---WTF----D--NLPISYVQGERQARNVLRESNLNYT 150 (221)
T ss_dssp H---HHHHHHHHHHHH--TTCCEEEEEEETTTTSCSCHHHHH---HHH----H--TSCHHHHHHHHHHHHHHHHSCSEEE
T ss_pred C---hhHHHHHHHHHh--cCCCeEEEEeeceecCCCCccccc---ccc----c--ccccHHHHHHHHHHHHHHhCCCCEE
Confidence 1 113333333322 123677766543322111111000 000 0 000 111234566778888888766
Q ss_pred EEEE
Q 041308 215 RAFI 218 (244)
Q Consensus 215 ~~~~ 218 (244)
-+.+
T Consensus 151 ~vrp 154 (221)
T 3r6d_A 151 ILRL 154 (221)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6544
No 415
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=61.25 E-value=9.8 Score=33.58 Aligned_cols=88 Identities=14% Similarity=-0.033 Sum_probs=51.9
Q ss_pred CCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHH
Q 041308 64 KGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDE 141 (244)
Q Consensus 64 ~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~ 141 (244)
..+.+|+=+|+| .|..+...++.. +.+ ++++|. +.-.+.+++. .+++ .++.+.+..+|+|+..---.+
T Consensus 272 l~GktV~IiG~G~IG~~~A~~lka~-Ga~-Viv~d~~~~~~~~A~~~-Ga~~--~~l~e~l~~aDvVi~atgt~~----- 341 (494)
T 3ce6_A 272 IGGKKVLICGYGDVGKGCAEAMKGQ-GAR-VSVTEIDPINALQAMME-GFDV--VTVEEAIGDADIVVTATGNKD----- 341 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEECSCHHHHHHHHHT-TCEE--CCHHHHGGGCSEEEECSSSSC-----
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHc-CCEE--ecHHHHHhCCCEEEECCCCHH-----
Confidence 346899999986 455555555544 457 999998 6555444432 2232 222111344699887532222
Q ss_pred HHHHH-HHHHHHcCCCCEEEEecc
Q 041308 142 CKLIM-ENYYKALLAGRKLIACEP 164 (244)
Q Consensus 142 ~~~~l-~~~~~~L~pgG~lii~d~ 164 (244)
++ ++..+.|||||+++.+-.
T Consensus 342 ---~i~~~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 342 ---IIMLEHIKAMKDHAILGNIGH 362 (494)
T ss_dssp ---SBCHHHHHHSCTTCEEEECSS
T ss_pred ---HHHHHHHHhcCCCcEEEEeCC
Confidence 12 256677999999987654
No 416
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=61.23 E-value=13 Score=30.30 Aligned_cols=94 Identities=12% Similarity=-0.031 Sum_probs=57.3
Q ss_pred ccCCCCCCcceEEEEc--CCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCC----CCCcceEEEec
Q 041308 58 DGYDGFKGVKRLVDVG--GSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFK----SIHVVDAIFMK 131 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~----~~p~~D~v~~~ 131 (244)
+... .++..+||=+| +|.|..+..+++.. +.+ +++++.+.-.+.+++..--.++..+-.+ .+...|+|+-.
T Consensus 146 ~~~~-~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~-vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~ 222 (321)
T 3tqh_A 146 NQAE-VKQGDVVLIHAGAGGVGHLAIQLAKQK-GTT-VITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDL 222 (321)
T ss_dssp HHTT-CCTTCEEEESSTTSHHHHHHHHHHHHT-TCE-EEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEES
T ss_pred HhcC-CCCCCEEEEEcCCcHHHHHHHHHHHHc-CCE-EEEEeccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEEC
Confidence 4444 77889999997 45788999999875 557 8777764445555543111222211111 12224877633
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
...+ . +..+.+.|+|||+++.+-
T Consensus 223 -----~g~~---~-~~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 223 -----VGGD---V-GIQSIDCLKETGCIVSVP 245 (321)
T ss_dssp -----SCHH---H-HHHHGGGEEEEEEEEECC
T ss_pred -----CCcH---H-HHHHHHhccCCCEEEEeC
Confidence 2222 2 377889999999999863
No 417
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=59.92 E-value=10 Score=30.51 Aligned_cols=88 Identities=10% Similarity=0.041 Sum_probs=51.0
Q ss_pred ceEEEEcCCc-c-HHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------------------------CCeeEEeCCCC
Q 041308 67 KRLVDVGGSA-G-DCLRIILQKHCFICEGINFDL-PEVVAKAPSI------------------------PEVTHIGGDMF 119 (244)
Q Consensus 67 ~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------------------------~~i~~~~gd~~ 119 (244)
.+|.=||+|+ | .++..+++. +.+ +++.|. ++.++.+++. .++.+ ..|..
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~ 80 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFH--GFA-VTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLA 80 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCE-EEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHH
Confidence 5778888874 2 233444433 456 899998 7665544321 12333 22332
Q ss_pred CCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 120 KSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 120 ~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+.+..+|+|+..-.- ..+....+++++...++|+..++-
T Consensus 81 ~~~~~aDlVi~av~~---~~~~~~~v~~~l~~~~~~~~il~s 119 (283)
T 4e12_A 81 QAVKDADLVIEAVPE---SLDLKRDIYTKLGELAPAKTIFAT 119 (283)
T ss_dssp HHTTTCSEEEECCCS---CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred HHhccCCEEEEeccC---cHHHHHHHHHHHHhhCCCCcEEEE
Confidence 224456988865321 122456789999999999776653
No 418
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=59.53 E-value=17 Score=31.42 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=57.0
Q ss_pred CCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe---CCCC-----------------
Q 041308 63 FKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG---GDMF----------------- 119 (244)
Q Consensus 63 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~---gd~~----------------- 119 (244)
.+++.+||=+|+ |.|..+..+++.. +.+ +++++. +.-++.+++..--.++. .|+.
T Consensus 226 ~~~g~~VlV~GasG~vG~~avqlak~~-Ga~-vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~ 303 (456)
T 3krt_A 226 MKQGDNVLIWGASGGLGSYATQFALAG-GAN-PICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFG 303 (456)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc-CCe-EEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHH
Confidence 677899999996 5788888888875 567 777776 66666665432111221 1110
Q ss_pred CC----CC--cceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 120 KS----IH--VVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 120 ~~----~p--~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+. .+ ..|+|+-. ... ..++.+.+.|+|||+++++-.
T Consensus 304 ~~i~~~t~g~g~Dvvid~-----~G~----~~~~~~~~~l~~~G~iv~~G~ 345 (456)
T 3krt_A 304 KRIRELTGGEDIDIVFEH-----PGR----ETFGASVFVTRKGGTITTCAS 345 (456)
T ss_dssp HHHHHHHTSCCEEEEEEC-----SCH----HHHHHHHHHEEEEEEEEESCC
T ss_pred HHHHHHhCCCCCcEEEEc-----CCc----hhHHHHHHHhhCCcEEEEEec
Confidence 00 01 13777632 222 357888899999999998754
No 419
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=59.51 E-value=39 Score=23.09 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=47.6
Q ss_pred ceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEecccccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTT 136 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~ 136 (244)
.+|+=+|+ |..+..+++.. .+.+ ++++|. +...+.+++. ...++.+|..+. + ...|+|+..---
T Consensus 7 ~~v~I~G~--G~iG~~~a~~l~~~g~~-v~~~d~~~~~~~~~~~~-~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~-- 80 (144)
T 2hmt_A 7 KQFAVIGL--GRFGGSIVKELHRMGHE-VLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVAIGA-- 80 (144)
T ss_dssp CSEEEECC--SHHHHHHHHHHHHTTCC-CEEEESCHHHHHTTTTT-CSEEEECCTTCHHHHHTTTGGGCSEEEECCCS--
T ss_pred CcEEEECC--CHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHh-CCEEEEeCCCCHHHHHhcCCCCCCEEEECCCC--
Confidence 57888987 44444444332 2356 888888 6666665543 346677787543 1 224887754321
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+.+....+....+.+.|. +++.
T Consensus 81 --~~~~~~~~~~~~~~~~~~-~ii~ 102 (144)
T 2hmt_A 81 --NIQASTLTTLLLKELDIP-NIWV 102 (144)
T ss_dssp --CHHHHHHHHHHHHHTTCS-EEEE
T ss_pred --chHHHHHHHHHHHHcCCC-eEEE
Confidence 112222344555567775 5554
No 420
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=59.48 E-value=18 Score=31.66 Aligned_cols=97 Identities=10% Similarity=0.020 Sum_probs=53.9
Q ss_pred CcceEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------C-------------CeeEEeCCCCCCC
Q 041308 65 GVKRLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSI------P-------------EVTHIGGDMFKSI 122 (244)
Q Consensus 65 ~~~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~-------------~i~~~~gd~~~~~ 122 (244)
+..+|.=||+|. |. ++..|++.. .+ ++++|. +..++..++. + ++.+ ..|..+.+
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G--~~-V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a~ 82 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIG--HD-VFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAAV 82 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CE-EEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhCC--CE-EEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHHh
Confidence 346888999884 43 344555543 35 899998 7766665542 1 1222 11211112
Q ss_pred CcceEEEecccc-----ccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 123 HVVDAIFMKWVL-----TTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 123 p~~D~v~~~~~l-----h~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
..+|+|+++--- +..+......+++.+.+.|+||..+ +.....
T Consensus 83 ~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iV-V~~STv 130 (478)
T 2y0c_A 83 AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVI-VDKSTV 130 (478)
T ss_dssp HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEE-EECSCC
T ss_pred hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEE-EEeCCc
Confidence 235888866221 0111145677889999999986555 444443
No 421
>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U
Probab=58.62 E-value=8 Score=37.35 Aligned_cols=89 Identities=13% Similarity=0.021 Sum_probs=57.5
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-C---CcceEEEeccccccC
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-I---HVVDAIFMKWVLTTW 137 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~---p~~D~v~~~~~lh~~ 137 (244)
....++||+|.|.-. .++...| ... ++.+|. |-+...+-=+.+-.|+.+|++.+ + ..+|++.+.+.|..-
T Consensus 820 ~~~~~~lDlGTGPE~---RiLsLiP~~~p-vtm~D~RP~ae~~~~w~~~T~f~~~DyL~~~~~~~~~~D~vt~i~SLGAA 895 (1289)
T 1ej6_A 820 YDGDVVLDLGTGPEA---KILELIPATSP-VTCVDIRPTAQPSGCWNVRTTFLELDYLSDGWITGVRGDIVTCMLSLGAA 895 (1289)
T ss_dssp CTTCCEEEESCCSSC---GGGGTSCTTSC-EEEEESSCCCSCSTTBSSCEEEEESCTTSSSCGGGCCCSEEEECSCHHHH
T ss_pred cccceEEEccCCCcc---eeeeecCCCCc-eEEecccCchhhhccccccceeeEccccccceeecCCCcEEEEEeechhh
Confidence 346899999998763 3334445 456 999998 64432222236689999999987 3 235999999888541
Q ss_pred CHH---HHHHHHHHHHHHcCCC
Q 041308 138 TDD---ECKLIMENYYKALLAG 156 (244)
Q Consensus 138 ~~~---~~~~~l~~~~~~L~pg 156 (244)
... .....++++.+...+.
T Consensus 896 ~A~a~~tl~~~~~q~l~~~~~~ 917 (1289)
T 1ej6_A 896 AAGKSMTFDAAFQQLIKVLSKS 917 (1289)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTS
T ss_pred hhccCCcHHHHHHHHHHHHHhc
Confidence 111 1235567776666664
No 422
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=58.50 E-value=19 Score=31.32 Aligned_cols=88 Identities=10% Similarity=0.067 Sum_probs=54.2
Q ss_pred CcceEEEEcCCccHHHHHHHHHcC--CCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--CC-----cceEEEecccc
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHC--FICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--IH-----VVDAIFMKWVL 134 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~p-----~~D~v~~~~~l 134 (244)
+..+|+=+||| ..+..+++... +.. ++++|. ++.++.....-.+..+.||..++ +. .+|+++..
T Consensus 2 ~~M~iiI~G~G--~vG~~la~~L~~~~~~-v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~--- 75 (461)
T 4g65_A 2 NAMKIIILGAG--QVGGTLAENLVGENND-ITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAV--- 75 (461)
T ss_dssp CCEEEEEECCS--HHHHHHHHHTCSTTEE-EEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEEC---
T ss_pred CcCEEEEECCC--HHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEE---
Confidence 34577777775 56666666653 234 899998 88887766545678899999876 32 35877643
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
-++++.--+.-.+++.+.|.-+.+
T Consensus 76 --t~~De~Nl~~~~~Ak~~~~~~~~i 99 (461)
T 4g65_A 76 --TNTDETNMAACQVAFTLFNTPNRI 99 (461)
T ss_dssp --CSCHHHHHHHHHHHHHHHCCSSEE
T ss_pred --cCChHHHHHHHHHHHHhcCCccce
Confidence 123333334455566665544443
No 423
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=57.80 E-value=7.7 Score=31.72 Aligned_cols=103 Identities=9% Similarity=0.017 Sum_probs=63.1
Q ss_pred CCcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCCCCC----CC---cceEEEecccc
Q 041308 64 KGVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDMFKS----IH---VVDAIFMKWVL 134 (244)
Q Consensus 64 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~~~~----~p---~~D~v~~~~~l 134 (244)
+...+++|+=||.|.+...+.+..-+...+..+|. +..++.-+.+ +...+..+|+.+- ++ ..|+++...-+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~~i~~~~~~Dll~ggpPC 93 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPC 93 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHHHHHHTCCCSEEEECCCC
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHHHhcccCCcCEEEecCCC
Confidence 44579999999999999999987544321367787 6655544332 4556778888653 23 24998866544
Q ss_pred ccCC----------HHHHHHHH---HHHHHHcCCC-CE----EEEecccCC
Q 041308 135 TTWT----------DDECKLIM---ENYYKALLAG-RK----LIACEPVLP 167 (244)
Q Consensus 135 h~~~----------~~~~~~~l---~~~~~~L~pg-G~----lii~d~~~~ 167 (244)
..++ |+ .-.++ -++.+.++|. |. ++++|.+..
T Consensus 94 Q~fS~ag~~r~g~~d~-r~~L~~~~~rii~~~~P~~~~~~P~~~l~ENV~g 143 (295)
T 2qrv_A 94 NDLSIVNPARKGLYEG-TGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVA 143 (295)
T ss_dssp GGGBTTCTTCCTTTST-TTTHHHHHHHHHHHHSCCTTCCCCCEEEEEEESS
T ss_pred ccccccCccccccccc-cchhHHHHHHHHHHhCcccccCCccEEEEEcCcc
Confidence 3332 22 11233 3444556775 32 777887654
No 424
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=57.63 E-value=23 Score=23.35 Aligned_cols=62 Identities=16% Similarity=-0.002 Sum_probs=37.9
Q ss_pred ceEEEEcCCccHHHHHHHHH---cCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC------CCcceEEEecc
Q 041308 67 KRLVDVGGSAGDCLRIILQK---HCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS------IHVVDAIFMKW 132 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~---~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~------~p~~D~v~~~~ 132 (244)
.+|+=+|+ |..+..+++. ....+ ++++|. +.-.+... ...+.+...|..+. +...|+|+..-
T Consensus 6 ~~v~I~G~--G~iG~~~~~~l~~~g~~~-v~~~~r~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~ 77 (118)
T 3ic5_A 6 WNICVVGA--GKIGQMIAALLKTSSNYS-VTVADHDLAALAVLN-RMGVATKQVDAKDEAGLAKALGGFDAVISAA 77 (118)
T ss_dssp EEEEEECC--SHHHHHHHHHHHHCSSEE-EEEEESCHHHHHHHH-TTTCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred CeEEEECC--CHHHHHHHHHHHhCCCce-EEEEeCCHHHHHHHH-hCCCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 57888988 5444444433 22246 888898 65555444 35677788888653 22348877554
No 425
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=57.41 E-value=24 Score=28.81 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=51.9
Q ss_pred CcceEEEEcCCccH--HHHHHHHHcCCCCeEEEeec-hHHHHhCCC-----CCCeeEEeCCCCCCCCcceEEEecccccc
Q 041308 65 GVKRLVDVGGSAGD--CLRIILQKHCFICEGINFDL-PEVVAKAPS-----IPEVTHIGGDMFKSIHVVDAIFMKWVLTT 136 (244)
Q Consensus 65 ~~~~vLDvG~G~G~--~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-----~~~i~~~~gd~~~~~p~~D~v~~~~~lh~ 136 (244)
+..+|.=||+|... ++..++....-.+ ++.+|. ++....+.+ .+++.. .+|+ +.+..+|+|+..--...
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~e-v~L~Di~~~~~g~a~dl~~~~~~~i~~-t~d~-~~l~~aD~Vi~aag~~~ 89 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADR-LVLLDLSEGTKGATMDLEIFNLPNVEI-SKDL-SASAHSKVVIFTVNSLG 89 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSE-EEEECCC-----CHHHHHHHTCTTEEE-ESCG-GGGTTCSEEEECCCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCE-EEEEcCCcchHHHHHHHhhhcCCCeEE-eCCH-HHHCCCCEEEEcCCCCC
Confidence 34689999999533 5555665554235 888998 532111111 146665 3665 55667799997742210
Q ss_pred ----------CCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 137 ----------WTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 137 ----------~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
-+-+-...+++++.+.. |.++++++..
T Consensus 90 pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sN 126 (303)
T 2i6t_A 90 SSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQ 126 (303)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCC
Confidence 00111334555555554 9999887543
No 426
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=56.82 E-value=3 Score=35.53 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=53.3
Q ss_pred CcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCC--------CC---------------
Q 041308 65 GVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGD--------MF--------------- 119 (244)
Q Consensus 65 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd--------~~--------------- 119 (244)
++.+|+=+|+| .|..+..+++.. +.+ ++++|. +...+.+++. ..+++..+ +.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~-V~v~D~~~~~l~~~~~l-Ga~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l 259 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRL-GAK-TTGYDVRPEVAEQVRSV-GAQWLDLGIDAAGEGGYARELSEAERAQQQQAL 259 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHH-TCE-EEEECSSGGGHHHHHHT-TCEECCCC-------------CHHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHc-CCeEEeccccccccccchhhhhHHHHhhhHHHH
Confidence 45899999998 566666666654 457 999998 7665555432 22332211 00
Q ss_pred CC-CCcceEEEeccccccCCHHHHHH-HHHHHHHHcCCCCEEEEec
Q 041308 120 KS-IHVVDAIFMKWVLTTWTDDECKL-IMENYYKALLAGRKLIACE 163 (244)
Q Consensus 120 ~~-~p~~D~v~~~~~lh~~~~~~~~~-~l~~~~~~L~pgG~lii~d 163 (244)
+. +..+|+|+..-. ++...... +-++..+.+|||+.++-+-
T Consensus 260 ~e~l~~aDIVI~tv~---iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 260 EDAITKFDIVITTAL---VPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHTTCSEEEECCC---CTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHhcCCEEEECCC---CCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 00 223599886532 22111111 2367778899998776643
No 427
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=56.33 E-value=65 Score=27.90 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=52.0
Q ss_pred CcceEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCC---------------------CCCeeEEeCCCCC
Q 041308 65 GVKRLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPS---------------------IPEVTHIGGDMFK 120 (244)
Q Consensus 65 ~~~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~---------------------~~~i~~~~gd~~~ 120 (244)
...+|.=||+|+ |. ++..+++. +.+ ++++|. +..++.+++ .....+ ..|. +
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~--G~~-V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~-~ 110 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARV--GIS-VVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST-K 110 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTT--TCE-EEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCG-G
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC--CCe-EEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCH-H
Confidence 346899999986 33 44445443 456 899998 655544321 011222 4444 3
Q ss_pred CCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 121 ~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.+..+|+|+..-. . ..+....+++++...++|+..++.
T Consensus 111 ~~~~aDlVIeaVp-e--~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 111 ELSTVDLVVEAVF-E--DMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp GGTTCSEEEECCC-S--CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred HHCCCCEEEEcCC-C--CHHHHHHHHHHHHhhCCCCeEEEe
Confidence 3445698887642 1 112235788899999988766553
No 428
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=56.23 E-value=17 Score=30.29 Aligned_cols=90 Identities=13% Similarity=-0.003 Sum_probs=53.9
Q ss_pred CC-CcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC-CCCCeeEEeCCCCCC------CCcceEEEecc
Q 041308 63 FK-GVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAP-SIPEVTHIGGDMFKS------IHVVDAIFMKW 132 (244)
Q Consensus 63 ~~-~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~-~~~~i~~~~gd~~~~------~p~~D~v~~~~ 132 (244)
.. +..+||-+|+| .|..+..+++.. +.+ +++++. +.-.+.++ +..--.++. ..+. ....|+|+-.-
T Consensus 184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~-Ga~-Vi~~~~~~~~~~~~~~~lGa~~v~~--~~~~~~~~~~~~~~D~vid~~ 259 (366)
T 1yqd_A 184 LDEPGKHIGIVGLGGLGHVAVKFAKAF-GSK-VTVISTSPSKKEEALKNFGADSFLV--SRDQEQMQAAAGTLDGIIDTV 259 (366)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCGGGHHHHHHTSCCSEEEE--TTCHHHHHHTTTCEEEEEECC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHhcCCceEEe--ccCHHHHHHhhCCCCEEEECC
Confidence 55 67899999976 477788888765 457 888887 65555444 322112221 1111 12248877442
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
-.- ..++.+.+.|+|||+++.+-.
T Consensus 260 g~~--------~~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 260 SAV--------HPLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp SSC--------CCSHHHHHHEEEEEEEEECCC
T ss_pred CcH--------HHHHHHHHHHhcCCEEEEEcc
Confidence 211 124566788999999998754
No 429
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=56.05 E-value=5.4 Score=33.01 Aligned_cols=89 Identities=9% Similarity=0.001 Sum_probs=50.9
Q ss_pred ceEEEEcCCc-c-HHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEe------------CCCCCCCCcceEEEecc
Q 041308 67 KRLVDVGGSA-G-DCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIG------------GDMFKSIHVVDAIFMKW 132 (244)
Q Consensus 67 ~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~------------gd~~~~~p~~D~v~~~~ 132 (244)
.+|.=||+|. | .++..|++.. .+ ++++|.+..++..++. .+.... .|. +....+|+|++.
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~g--~~-V~~~~r~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~Vila- 77 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAG--EA-INVLARGATLQALQTA-GLRLTEDGATHTLPVRATHDA-AALGEQDVVIVA- 77 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHTT--CC-EEEECCHHHHHHHHHT-CEEEEETTEEEEECCEEESCH-HHHCCCSEEEEC-
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CE-EEEEEChHHHHHHHHC-CCEEecCCCeEEEeeeEECCH-HHcCCCCEEEEe-
Confidence 5788899883 3 3455555543 35 8888884344433321 222211 111 112235888865
Q ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 133 VLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 133 ~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.+..+...+++.+...++|+..++.+...
T Consensus 78 ----vk~~~~~~~~~~l~~~l~~~~~iv~~~nG 106 (335)
T 3ghy_A 78 ----VKAPALESVAAGIAPLIGPGTCVVVAMNG 106 (335)
T ss_dssp ----CCHHHHHHHHGGGSSSCCTTCEEEECCSS
T ss_pred ----CCchhHHHHHHHHHhhCCCCCEEEEECCC
Confidence 45555667788888888888887775554
No 430
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=54.97 E-value=55 Score=27.13 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=36.0
Q ss_pred ceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C----CcceEEEec
Q 041308 67 KRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I----HVVDAIFMK 131 (244)
Q Consensus 67 ~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~----p~~D~v~~~ 131 (244)
.+||=+||| .|......+.+. .. +++.|. ..-++.+++ .+..+..|..+. + ...|+|+..
T Consensus 17 mkilvlGaG~vG~~~~~~L~~~--~~-v~~~~~~~~~~~~~~~--~~~~~~~d~~d~~~l~~~~~~~DvVi~~ 84 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKDE--FD-VYIGDVNNENLEKVKE--FATPLKVDASNFDKLVEVMKEFELVIGA 84 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTTT--SE-EEEEESCHHHHHHHTT--TSEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred cEEEEECCCHHHHHHHHHHhcC--CC-eEEEEcCHHHHHHHhc--cCCcEEEecCCHHHHHHHHhCCCEEEEe
Confidence 589999985 444433333332 34 777787 666666654 455566777543 2 235888854
No 431
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=54.94 E-value=19 Score=30.91 Aligned_cols=92 Identities=13% Similarity=0.057 Sum_probs=47.7
Q ss_pred eEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------------------CCeeEEeCCCCCCCCcc
Q 041308 68 RLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSI-------------------PEVTHIGGDMFKSIHVV 125 (244)
Q Consensus 68 ~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------------------~~i~~~~gd~~~~~p~~ 125 (244)
+|.=||+|. |. ++..+++. +.+ ++++|. +..++..++. .++.+ ..|..+.+..+
T Consensus 2 kI~VIG~G~vG~~~A~~la~~--G~~-V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~-t~~~~~~~~~a 77 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSAR--GHE-VIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKKAVLDS 77 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHT--TCE-EEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHC--CCE-EEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE-eCCHHHHhccC
Confidence 466678773 33 34445543 346 899998 7666654431 12332 12221112335
Q ss_pred eEEEecccccc-----CCHHHHHHHHHHHHHHcCCC--CEEEEec
Q 041308 126 DAIFMKWVLTT-----WTDDECKLIMENYYKALLAG--RKLIACE 163 (244)
Q Consensus 126 D~v~~~~~lh~-----~~~~~~~~~l~~~~~~L~pg--G~lii~d 163 (244)
|+|++.---.. .+-.....+++.+.+.|+|+ |.+++..
T Consensus 78 DvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~ 122 (436)
T 1mv8_A 78 DVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVR 122 (436)
T ss_dssp SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEEC
T ss_pred CEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEe
Confidence 88886632211 01111456788898999982 4444443
No 432
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=54.69 E-value=6 Score=32.24 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 140 DECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
++...+|..+.++|+|||+++++..
T Consensus 210 ~~L~~~L~~a~~~L~~gGrl~visf 234 (285)
T 1wg8_A 210 NALKEFLEQAAEVLAPGGRLVVIAF 234 (285)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3456789999999999999999876
No 433
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=54.57 E-value=74 Score=28.02 Aligned_cols=127 Identities=12% Similarity=0.034 Sum_probs=65.7
Q ss_pred cceEEEEc-CCccHHH-HHHHHHcCCCCeEEEeec---hHHHHhCCCCCCeeEEeCCCCCCC-CcceEEEeccccccCCH
Q 041308 66 VKRLVDVG-GSAGDCL-RIILQKHCFICEGINFDL---PEVVAKAPSIPEVTHIGGDMFKSI-HVVDAIFMKWVLTTWTD 139 (244)
Q Consensus 66 ~~~vLDvG-~G~G~~~-~~l~~~~p~~~~~~~~D~---~~~i~~a~~~~~i~~~~gd~~~~~-p~~D~v~~~~~lh~~~~ 139 (244)
..+|.=|| ||+|..+ ..++.. -+.+ +++.|. +.+.+..++ ..+.+..|.-.+.+ ..+|+|+.+..+.. +.
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~-~G~~-V~~sD~~~~~~~~~~L~~-~gi~~~~G~~~~~~~~~~d~vV~Spgi~~-~~ 94 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARA-LGHT-VTGSDANIYPPMSTQLEQ-AGVTIEEGYLIAHLQPAPDLVVVGNAMKR-GM 94 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHH-TTCE-EEEEESCCCTTHHHHHHH-TTCEEEESCCGGGGCSCCSEEEECTTCCT-TS
T ss_pred CCEEEEEEecHhhHHHHHHHHHh-CCCE-EEEECCCCCcHHHHHHHH-CCCEEECCCCHHHcCCCCCEEEECCCcCC-CC
Confidence 36788888 6788753 233332 3456 888896 233332222 46777776432334 34699998877632 12
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcc-cHhhhhhhccCceecCHHHHHHHHHhCCCCeE
Q 041308 140 DECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEG-DIFVMTIYRAKGKHKTEQEFKQLGFSTGFPHL 214 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 214 (244)
+ .++++++ -|.-++.+.. +... ... .....+.--++|+.-|..-+..+|+++|++..
T Consensus 95 p----~l~~a~~----~gi~v~~~~e--------~l~~--~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~ 152 (524)
T 3hn7_A 95 D----VIEYMLD----TGLRYTSGPQ--------FLSE--QVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAG 152 (524)
T ss_dssp H----HHHHHHH----HTCCEEEHHH--------HHHH--HTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred H----HHHHHHH----CCCcEEEHHH--------HHHH--HHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCCce
Confidence 2 2333332 2444554421 1100 000 11111101234666777788899999998753
No 434
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=54.29 E-value=6.1 Score=33.14 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 141 ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+...+|..+.++|+|||+++++..
T Consensus 252 ~L~~~L~~a~~~L~~gGRl~VISF 275 (347)
T 3tka_A 252 EIEQALKSSLNVLAPGGRLSIISF 275 (347)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHhCCCCEEEEEec
Confidence 455689999999999999999876
No 435
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=54.27 E-value=4.2 Score=34.51 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=27.1
Q ss_pred CcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhC
Q 041308 65 GVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKA 105 (244)
Q Consensus 65 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a 105 (244)
++.+|+=+|+| .|..+..+++... .+ ++++|. +...+.+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G-a~-V~~~d~~~~~~~~~ 211 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLG-AV-VMATDVRAATKEQV 211 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-CE-EEEECSCSTTHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CE-EEEEeCCHHHHHHH
Confidence 35899999987 5666666666653 57 999998 5544433
No 436
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=54.01 E-value=18 Score=29.85 Aligned_cols=92 Identities=11% Similarity=0.094 Sum_probs=57.5
Q ss_pred ccCCCCCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCCCCCCC--------C-c-c
Q 041308 58 DGYDGFKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGDMFKSI--------H-V-V 125 (244)
Q Consensus 58 ~~~~~~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd~~~~~--------p-~-~ 125 (244)
+... .+++.+||-+|+ |.|..+..+++.. +.+ ++++..+.-++.+++.. ...+. +- +++ . . .
T Consensus 144 ~~~~-~~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~-Vi~~~~~~~~~~~~~lG-a~~i~-~~-~~~~~~~~~~~~~~g~ 217 (343)
T 3gaz_A 144 DRAQ-VQDGQTVLIQGGGGGVGHVAIQIALAR-GAR-VFATARGSDLEYVRDLG-ATPID-AS-REPEDYAAEHTAGQGF 217 (343)
T ss_dssp TTTC-CCTTCEEEEETTTSHHHHHHHHHHHHT-TCE-EEEEECHHHHHHHHHHT-SEEEE-TT-SCHHHHHHHHHTTSCE
T ss_pred HhcC-CCCCCEEEEecCCCHHHHHHHHHHHHC-CCE-EEEEeCHHHHHHHHHcC-CCEec-cC-CCHHHHHHHHhcCCCc
Confidence 4444 777899999993 5788888888765 457 77773366666665432 11122 11 111 1 1 3
Q ss_pred eEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 126 DAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 126 D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
|+|+-+- .. ..+..+.+.|+|||+++++-.
T Consensus 218 D~vid~~-----g~----~~~~~~~~~l~~~G~iv~~g~ 247 (343)
T 3gaz_A 218 DLVYDTL-----GG----PVLDASFSAVKRFGHVVSCLG 247 (343)
T ss_dssp EEEEESS-----CT----HHHHHHHHHEEEEEEEEESCC
T ss_pred eEEEECC-----Cc----HHHHHHHHHHhcCCeEEEEcc
Confidence 7776432 22 357788889999999998754
No 437
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Probab=53.33 E-value=16 Score=29.88 Aligned_cols=91 Identities=10% Similarity=0.016 Sum_probs=54.1
Q ss_pred CCCcc-eEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe---C--CCCCCC-Cc-ceEEEec
Q 041308 63 FKGVK-RLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG---G--DMFKSI-HV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~-~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~---g--d~~~~~-p~-~D~v~~~ 131 (244)
.++.. +||-+|+ |.|..+..+++.. +.+ +++++. ++-.+.+++..--.++. . +....+ .. .|+++-.
T Consensus 147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~-vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~ 224 (330)
T 1tt7_A 147 LSPEKGSVLVTGATGGVGGIAVSMLNKR-GYD-VVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDP 224 (330)
T ss_dssp CCGGGCCEEEESTTSHHHHHHHHHHHHH-TCC-EEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred cCCCCceEEEECCCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEEC
Confidence 55554 8999996 5788888888765 467 888886 54444444321111111 1 111111 12 3877633
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
- .. ..+..+.+.|+|||+++++-.
T Consensus 225 ~-----g~----~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 225 V-----GG----KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp C-----CT----HHHHHHHTTEEEEEEEEECCC
T ss_pred C-----cH----HHHHHHHHhhcCCCEEEEEec
Confidence 2 22 246788899999999998754
No 438
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=52.67 E-value=17 Score=29.57 Aligned_cols=91 Identities=8% Similarity=-0.024 Sum_probs=53.8
Q ss_pred CCCcc-eEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEe-CCC----CCCC-Cc-ceEEEec
Q 041308 63 FKGVK-RLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIG-GDM----FKSI-HV-VDAIFMK 131 (244)
Q Consensus 63 ~~~~~-~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~-gd~----~~~~-p~-~D~v~~~ 131 (244)
.++.. +||-+|+ |.|..+..+++.. +.+ +++++. ++-.+.+++..--.++. .+. ...+ .. .|+++-.
T Consensus 146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~-vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~ 223 (328)
T 1xa0_A 146 LTPERGPVLVTGATGGVGSLAVSMLAKR-GYT-VEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDP 223 (328)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHT-TCC-EEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEEC
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHC-CCE-EEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEEC
Confidence 55555 8999996 5788888888875 467 888886 55555544331111111 111 1111 12 3877633
Q ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 132 WVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 132 ~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
-- . ..+..+.+.|+|||+++++-.
T Consensus 224 ~g-----~----~~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 224 VG-----G----RTLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp ST-----T----TTHHHHHHTEEEEEEEEECSC
T ss_pred Cc-----H----HHHHHHHHhhccCCEEEEEee
Confidence 21 1 136778889999999998754
No 439
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=52.51 E-value=29 Score=28.30 Aligned_cols=86 Identities=14% Similarity=0.069 Sum_probs=48.1
Q ss_pred ceEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-h-------HHHHhCCCCCCeeEEeC-CCCCCCCcceEEEeccccc
Q 041308 67 KRLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-P-------EVVAKAPSIPEVTHIGG-DMFKSIHVVDAIFMKWVLT 135 (244)
Q Consensus 67 ~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~-------~~i~~a~~~~~i~~~~g-d~~~~~p~~D~v~~~~~lh 135 (244)
.+|.=||+|. |. ++..+++..+ .+ +++.|. + ...+...+ ..+ .. +..+-...+|+|++.
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~G~-~~-V~~~dr~~~~~~~~~~~~~~~~~-~g~---~~~s~~e~~~~aDvVi~a---- 94 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGRNA-AR-LAAYDLRFNDPAASGALRARAAE-LGV---EPLDDVAGIACADVVLSL---- 94 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-SE-EEEECGGGGCTTTHHHHHHHHHH-TTC---EEESSGGGGGGCSEEEEC----
T ss_pred CeEEEECccHHHHHHHHHHHHcCC-Ce-EEEEeCCCccccchHHHHHHHHH-CCC---CCCCHHHHHhcCCEEEEe----
Confidence 4688888762 22 3444444331 45 889998 5 34333322 122 22 332223446988865
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
++++...+.++++...|+||..++...
T Consensus 95 -vp~~~~~~~~~~i~~~l~~~~ivv~~s 121 (317)
T 4ezb_A 95 -VVGAATKAVAASAAPHLSDEAVFIDLN 121 (317)
T ss_dssp -CCGGGHHHHHHHHGGGCCTTCEEEECC
T ss_pred -cCCHHHHHHHHHHHhhcCCCCEEEECC
Confidence 444444566788888898877665443
No 440
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=52.45 E-value=17 Score=30.10 Aligned_cols=92 Identities=15% Similarity=-0.010 Sum_probs=54.8
Q ss_pred CC-CcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCC-CCCCeeEEeCCCCC---CC-CcceEEEecccc
Q 041308 63 FK-GVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAP-SIPEVTHIGGDMFK---SI-HVVDAIFMKWVL 134 (244)
Q Consensus 63 ~~-~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~-~~~~i~~~~gd~~~---~~-p~~D~v~~~~~l 134 (244)
.. +..+||-+|+| .|..+..+++.. +.+ ++++|. ++-.+.++ +..--.++..+-.+ .. ...|+|+-.---
T Consensus 177 ~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~-Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~ 254 (357)
T 2cf5_A 177 LKQPGLRGGILGLGGVGHMGVKIAKAM-GHH-VTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPV 254 (357)
T ss_dssp TTSTTCEEEEECCSHHHHHHHHHHHHH-TCE-EEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCe-EEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCC
Confidence 55 77899999976 577888888765 457 888887 65555544 32111122111000 01 124877643221
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+ ..++.+.+.|+|||+++++-.
T Consensus 255 -----~---~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 255 -----H---HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp -----C---CCSHHHHTTEEEEEEEEECSC
T ss_pred -----h---HHHHHHHHHhccCCEEEEeCC
Confidence 1 124567789999999998754
No 441
>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}
Probab=52.06 E-value=6.7 Score=28.18 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCCCEEEE
Q 041308 143 KLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii 161 (244)
++++..+.++|||||+|.-
T Consensus 78 r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 78 KKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp HHHHHHHHTTCCTTCCEEC
T ss_pred HHHHHHHHHHhCCCCEEEe
Confidence 4789999999999999986
No 442
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Probab=51.93 E-value=22 Score=29.68 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=53.7
Q ss_pred CCCcceEEEEc--CCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeCC---CCCCC---CcceEEEecccc
Q 041308 63 FKGVKRLVDVG--GSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGGD---MFKSI---HVVDAIFMKWVL 134 (244)
Q Consensus 63 ~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~gd---~~~~~---p~~D~v~~~~~l 134 (244)
.+++.+||=.| +|.|..+..+++.. +.+ +++.+.+.-.+.+++..--.++..+ +.+.+ ...|+|+-.--
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~-Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g- 257 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAW-DAH-VTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVG- 257 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHT-TCE-EEEEECGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSC-
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC-CCE-EEEEeChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCC-
Confidence 45678999999 45788888888875 467 7777764444544433211222111 10001 12387764322
Q ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 135 TTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 135 h~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+ ...+....+.|+|||+++++-
T Consensus 258 ----~~--~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 258 ----GS--TETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp ----TT--HHHHGGGGBCSSSCCEEEESC
T ss_pred ----Ch--hhhhHHHHHhhcCCcEEEEeC
Confidence 11 123566778899999999864
No 443
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=51.92 E-value=14 Score=30.52 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=54.9
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------------------------CCeeEEeCCCC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI------------------------PEVTHIGGDMF 119 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------------------------~~i~~~~gd~~ 119 (244)
...+|.=||+|+=.-.++..-...+.+ ++..|. ++.++.+.++ .++++. .|+.
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~~-V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~l~ 82 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGFR-VKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNLA 82 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCC-EEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCHH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cchH
Confidence 357899999985333333222234567 999998 7665544321 234432 2221
Q ss_pred CCCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 120 KSIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 120 ~~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
+.+..+|+|+ ..+...+. -..++++++-+.++|+..|.-....+
T Consensus 83 ~a~~~ad~Vi-Eav~E~l~--iK~~lf~~l~~~~~~~aIlaSNTSsl 126 (319)
T 3ado_A 83 EAVEGVVHIQ-ECVPENLD--LKRKIFAQLDSIVDDRVVLSSSSSCL 126 (319)
T ss_dssp HHTTTEEEEE-ECCCSCHH--HHHHHHHHHHTTCCSSSEEEECCSSC
T ss_pred hHhccCcEEe-eccccHHH--HHHHHHHHHHHHhhhcceeehhhhhc
Confidence 1233346655 44444433 34689999999999988776654433
No 444
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=51.12 E-value=30 Score=30.06 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=50.4
Q ss_pred ceEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------------------CCeeEEeCCCCCCCCcc
Q 041308 67 KRLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSI------------------PEVTHIGGDMFKSIHVV 125 (244)
Q Consensus 67 ~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------------------~~i~~~~gd~~~~~p~~ 125 (244)
.+|.=||+|. |. ++..+++..++.+ ++++|. +..++..++. .++.+ ..|..+.+..+
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~-V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~-t~~~~e~~~~a 83 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIR-VTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF-STNIDDAIKEA 83 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSE-EEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE-ESCHHHHHHHC
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCE-EEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE-ECCHHHHHhcC
Confidence 4788889883 43 4556666644567 999998 7766654431 12222 12211112235
Q ss_pred eEEEeccc--cc--------cCCHHHHHHHHHHHHHHcCCCCEEE
Q 041308 126 DAIFMKWV--LT--------TWTDDECKLIMENYYKALLAGRKLI 160 (244)
Q Consensus 126 D~v~~~~~--lh--------~~~~~~~~~~l~~~~~~L~pgG~li 160 (244)
|+|++.-- .+ ..+-.....+++.+.+.|+||..++
T Consensus 84 DvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV 128 (467)
T 2q3e_A 84 DLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVT 128 (467)
T ss_dssp SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEE
T ss_pred CEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEE
Confidence 88886632 21 1111124466778888888865443
No 445
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=50.92 E-value=9.3 Score=28.33 Aligned_cols=43 Identities=19% Similarity=-0.090 Sum_probs=29.8
Q ss_pred EEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEE
Q 041308 71 DVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHI 114 (244)
Q Consensus 71 DvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~ 114 (244)
=+.||||.=..-.+.++|+++ +..+--+.....+|+..+.+++
T Consensus 66 IliCGTGiG~siaANKv~GIR-AAl~~d~~sA~~ar~hNnaNVL 108 (162)
T 2vvp_A 66 IVLGGSGNGEQIAANKVPGAR-CALAWSVQTAALAREHNNAQLI 108 (162)
T ss_dssp EEEESSSHHHHHHHHTSTTCC-EEECCSHHHHHHHHHTTCCSEE
T ss_pred EEEeCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHhCCCcEE
Confidence 355777777778889999999 7666556666667765444443
No 446
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=50.89 E-value=24 Score=27.53 Aligned_cols=62 Identities=13% Similarity=-0.021 Sum_probs=37.5
Q ss_pred cceEEEEcCCccHHH--HHHHHHcCCCCeEEEeec---hHHHHhCCCCCCeeEEeCCCCCC-CCcceEEEec
Q 041308 66 VKRLVDVGGSAGDCL--RIILQKHCFICEGINFDL---PEVVAKAPSIPEVTHIGGDMFKS-IHVVDAIFMK 131 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~--~~l~~~~p~~~~~~~~D~---~~~i~~a~~~~~i~~~~gd~~~~-~p~~D~v~~~ 131 (244)
+.+||=||+|.=... ..|++. +.+ +++++. +.+.+.+. ..++.++.+++... +..+|+|+..
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~--GA~-VtVvap~~~~~l~~l~~-~~~i~~i~~~~~~~dL~~adLVIaA 98 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQE--GAA-ITVVAPTVSAEINEWEA-KGQLRVKRKKVGEEDLLNVFFIVVA 98 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGG--CCC-EEEECSSCCHHHHHHHH-TTSCEEECSCCCGGGSSSCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCE-EEEECCCCCHHHHHHHH-cCCcEEEECCCCHhHhCCCCEEEEC
Confidence 489999999843332 223333 445 777764 33333332 36788888777544 6667988865
No 447
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=50.27 E-value=14 Score=30.65 Aligned_cols=84 Identities=14% Similarity=0.037 Sum_probs=49.4
Q ss_pred ceEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hH-HHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHHHH
Q 041308 67 KRLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PE-VVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDDEC 142 (244)
Q Consensus 67 ~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~-~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~~~ 142 (244)
.+|.=||+|. +.++..+.+. +.+ +++.|. +. ..+.+++ ..+.+. |..+.+..+|+|++. .++...
T Consensus 17 ~~I~IIG~G~mG~alA~~L~~~--G~~-V~~~~~~~~~~~~~a~~-~G~~~~--~~~e~~~~aDvVila-----vp~~~~ 85 (338)
T 1np3_A 17 KKVAIIGYGSQGHAHACNLKDS--GVD-VTVGLRSGSATVAKAEA-HGLKVA--DVKTAVAAADVVMIL-----TPDEFQ 85 (338)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT--TCC-EEEECCTTCHHHHHHHH-TTCEEE--CHHHHHHTCSEEEEC-----SCHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC--cCE-EEEEECChHHHHHHHHH-CCCEEc--cHHHHHhcCCEEEEe-----CCcHHH
Confidence 5788899874 3344445443 346 888887 43 2444433 233332 321113346988875 555555
Q ss_pred HHHHH-HHHHHcCCCCEEEE
Q 041308 143 KLIME-NYYKALLAGRKLIA 161 (244)
Q Consensus 143 ~~~l~-~~~~~L~pgG~lii 161 (244)
..+++ ++...|+||..++.
T Consensus 86 ~~v~~~~i~~~l~~~~ivi~ 105 (338)
T 1np3_A 86 GRLYKEEIEPNLKKGATLAF 105 (338)
T ss_dssp HHHHHHHTGGGCCTTCEEEE
T ss_pred HHHHHHHHHhhCCCCCEEEE
Confidence 67787 88888988876663
No 448
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=49.84 E-value=28 Score=28.11 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=50.1
Q ss_pred ceEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCH-HHH
Q 041308 67 KRLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTD-DEC 142 (244)
Q Consensus 67 ~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~-~~~ 142 (244)
.+|.=||+|. |. ++..+++. +.+ +++.|. +..++...+. .+.....+..+-...+|+|++. +++ ...
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~--G~~-V~~~dr~~~~~~~~~~~-g~~~~~~~~~e~~~~aDvvi~~-----vp~~~~~ 78 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRA--GLS-TWGADLNPQACANLLAE-GACGAAASAREFAGVVDALVIL-----VVNAAQV 78 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCE-EEEECSCHHHHHHHHHT-TCSEEESSSTTTTTTCSEEEEC-----CSSHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCe-EEEEECCHHHHHHHHHc-CCccccCCHHHHHhcCCEEEEE-----CCCHHHH
Confidence 5788888772 22 34444443 346 889998 7666554432 2222234443334556988865 343 334
Q ss_pred HHHH---HHHHHHcCCCCEEEEe
Q 041308 143 KLIM---ENYYKALLAGRKLIAC 162 (244)
Q Consensus 143 ~~~l---~~~~~~L~pgG~lii~ 162 (244)
..++ +++...++||..++..
T Consensus 79 ~~v~~~~~~l~~~l~~g~ivv~~ 101 (303)
T 3g0o_A 79 RQVLFGEDGVAHLMKPGSAVMVS 101 (303)
T ss_dssp HHHHC--CCCGGGSCTTCEEEEC
T ss_pred HHHHhChhhHHhhCCCCCEEEec
Confidence 4555 6667788887766544
No 449
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=49.77 E-value=37 Score=31.59 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=61.0
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC---------------------CCeeEEeCCCCCCC
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI---------------------PEVTHIGGDMFKSI 122 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~---------------------~~i~~~~gd~~~~~ 122 (244)
+..+|-=||+|+=.-.++..-...+.. ++..|. ++.++.+++. .++++. .|. +.+
T Consensus 315 ~i~~v~ViGaG~MG~gIA~~~a~aG~~-V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l 391 (742)
T 3zwc_A 315 PVSSVGVLGLGTMGRGIAISFARVGIS-VVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFS-SST-KEL 391 (742)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEE-SCG-GGG
T ss_pred cccEEEEEcccHHHHHHHHHHHhCCCc-hhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhccc-CcH-HHH
Confidence 457999999997665555555556777 999998 7666555431 233332 121 234
Q ss_pred CcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 123 HVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 123 p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
..+|+|+ ..+...+. -..++++++-+.++|+..|.-....+
T Consensus 392 ~~aDlVI-EAV~E~l~--iK~~vf~~le~~~~~~aIlASNTSsl 432 (742)
T 3zwc_A 392 STVDLVV-EAVFEDMN--LKKKVFAELSALCKPGAFLCTNTSAL 432 (742)
T ss_dssp GSCSEEE-ECCCSCHH--HHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred hhCCEEE-EeccccHH--HHHHHHHHHhhcCCCCceEEecCCcC
Confidence 4458776 33554433 34689999999999988777644433
No 450
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=49.10 E-value=14 Score=30.89 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=25.8
Q ss_pred cceEEEEcCCccHHHHH--HHHHcCCCCeEEEeec
Q 041308 66 VKRLVDVGGSAGDCLRI--ILQKHCFICEGINFDL 98 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~--l~~~~p~~~~~~~~D~ 98 (244)
+.+|+=||+|.+.++.+ |.+..++.+ ++++|.
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~-Vtlie~ 35 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIE-VTLIEP 35 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSE-EEEECS
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCe-EEEEeC
Confidence 46899999999876544 667778888 999985
No 451
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=48.63 E-value=11 Score=27.61 Aligned_cols=42 Identities=12% Similarity=-0.070 Sum_probs=29.3
Q ss_pred EcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEE
Q 041308 72 VGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHI 114 (244)
Q Consensus 72 vG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~ 114 (244)
+.||||.=..-.+.++|+++ +..+--+.....+|+..+.+++
T Consensus 63 liCGTGiG~siaANKv~GIR-AAl~~d~~sA~~ar~hNnaNVl 104 (149)
T 3he8_A 63 VICGTGLGISIAANKVPGIR-AAVCTNSYMARMSREHNDANIL 104 (149)
T ss_dssp EEESSSHHHHHHHHTSTTCC-EEECSSHHHHHHHHHTTCCSEE
T ss_pred EEcCCcHHHHHHhhcCCCeE-EEEeCCHHHHHHHHHhCCCcEE
Confidence 45777776777889999999 7666556666777765444443
No 452
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=48.52 E-value=8.6 Score=31.78 Aligned_cols=23 Identities=9% Similarity=-0.044 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCCCEEEEec
Q 041308 141 ECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.....|.+++++|+|||.+++.-
T Consensus 84 ~~~~~l~~~~rvLk~~G~i~i~~ 106 (319)
T 1eg2_A 84 WAKRWLAEAERVLSPTGSIAIFG 106 (319)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEc
Confidence 35677889999999999998853
No 453
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=48.27 E-value=34 Score=25.72 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=38.2
Q ss_pred ceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--CC----cceEEEecc
Q 041308 67 KRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--IH----VVDAIFMKW 132 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~p----~~D~v~~~~ 132 (244)
.+||=. ||+|.++..+++.. .+.+ +++++. +.-.+.. ..+++++.+|+.+. +. ..|+|+...
T Consensus 5 ~~ilIt-GatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 5 KKIVLI-GASGFVGSALLNEALNRGFE-VTAVVRHPEKIKIE--NEHLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CEEEEE-TCCHHHHHHHHHHHHTTTCE-EEEECSCGGGCCCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CEEEEE-cCCchHHHHHHHHHHHCCCE-EEEEEcCcccchhc--cCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 456655 45677766666554 2346 888888 5432221 27899999999764 22 248877543
No 454
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=48.15 E-value=9.4 Score=28.05 Aligned_cols=42 Identities=14% Similarity=-0.025 Sum_probs=29.0
Q ss_pred EEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeE
Q 041308 71 DVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTH 113 (244)
Q Consensus 71 DvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~ 113 (244)
=+.||||.=..-.+.++|+++ +..+--+.....+|+..+.++
T Consensus 74 IliCGTGiG~siaANKv~GIR-AAl~~d~~sA~~ar~hNnANV 115 (155)
T 1o1x_A 74 ILLCGTGLGMSIAANRYRGIR-AALCLFPDMARLARSHNNANI 115 (155)
T ss_dssp EEEESSSHHHHHHHTTSTTCC-EEECSSHHHHHHHHHTTCCSE
T ss_pred EEEcCCcHHHHHHhhcCCCeE-EEEeCCHHHHHHHHHcCCCcE
Confidence 345777777777888999999 766655666666776544333
No 455
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=48.01 E-value=11 Score=27.93 Aligned_cols=43 Identities=12% Similarity=-0.131 Sum_probs=29.0
Q ss_pred EEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEE
Q 041308 71 DVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHI 114 (244)
Q Consensus 71 DvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~ 114 (244)
=+.||||.=..-.+.++|+++ +..+--+.....+|+..+.+++
T Consensus 83 IliCGTGiG~sIaANKv~GIR-AAlc~d~~sA~laR~hNnANVL 125 (166)
T 3s5p_A 83 ILVCGTGIGISIAANKMKGIR-CALCSTEYDAEMARKHNNANAL 125 (166)
T ss_dssp EEEESSSHHHHHHHHTSTTCC-EEECSSHHHHHHHHHTTCCCEE
T ss_pred EEEcCCcHHHHHHhhcCCCeE-EEEeCCHHHHHHHHHhCCCcEE
Confidence 345777776777888999999 7666556666667765444443
No 456
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=47.94 E-value=19 Score=29.99 Aligned_cols=88 Identities=10% Similarity=-0.007 Sum_probs=53.4
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-h---HHHHhCCCCCCeeEEeC-CCCCCC----CcceEEEeccccc
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-P---EVVAKAPSIPEVTHIGG-DMFKSI----HVVDAIFMKWVLT 135 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~---~~i~~a~~~~~i~~~~g-d~~~~~----p~~D~v~~~~~lh 135 (244)
+.+||-+|+| .|..+..+++.. +.+ ++++|. + .-.+.+++.. .+.+.. |+.+.+ ...|+|+-.--.
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~-Vi~~~~~~~~~~~~~~~~~~g-a~~v~~~~~~~~~~~~~~~~d~vid~~g~- 256 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-GLE-VWMANRREPTEVEQTVIEETK-TNYYNSSNGYDKLKDSVGKFDVIIDATGA- 256 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-TCE-EEEEESSCCCHHHHHHHHHHT-CEEEECTTCSHHHHHHHCCEEEEEECCCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCE-EEEEeCCccchHHHHHHHHhC-CceechHHHHHHHHHhCCCCCEEEECCCC-
Confidence 7899999974 466777777665 457 898987 5 5555554321 222211 111111 113877644321
Q ss_pred cCCHHHHHHHH-HHHHHHcCCCCEEEEecc
Q 041308 136 TWTDDECKLIM-ENYYKALLAGRKLIACEP 164 (244)
Q Consensus 136 ~~~~~~~~~~l-~~~~~~L~pgG~lii~d~ 164 (244)
. ..+ +.+.+.|+|||+++++-.
T Consensus 257 ----~---~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 257 ----D---VNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp ----C---THHHHHHGGGEEEEEEEEECSC
T ss_pred ----h---HHHHHHHHHHHhcCCEEEEEec
Confidence 1 235 788899999999998765
No 457
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=47.93 E-value=20 Score=29.46 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=48.2
Q ss_pred ceEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEE-------------eCCCCCCCCcceEEEe
Q 041308 67 KRLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHI-------------GGDMFKSIHVVDAIFM 130 (244)
Q Consensus 67 ~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~-------------~gd~~~~~p~~D~v~~ 130 (244)
.+|.=||+|. |. ++..+.+. +.+ ++++|. +..++..++...+.+. ..|..+.+..+|+|++
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~--g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~ 81 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK--GQS-VLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI 81 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCE-EEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCE-EEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEE
Confidence 4788899874 33 34444443 346 888898 6655544332122211 1111000223588886
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.--- .....+++.+...++||..++..
T Consensus 82 ~v~~-----~~~~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 82 VVPA-----IHHASIAANIASYISEGQLIILN 108 (359)
T ss_dssp CSCG-----GGHHHHHHHHGGGCCTTCEEEES
T ss_pred eCCc-----hHHHHHHHHHHHhCCCCCEEEEc
Confidence 6433 22356778888889887766554
No 458
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=47.31 E-value=58 Score=27.80 Aligned_cols=91 Identities=10% Similarity=-0.009 Sum_probs=56.2
Q ss_pred CCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEE---eCCCCC----------------
Q 041308 63 FKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHI---GGDMFK---------------- 120 (244)
Q Consensus 63 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~---~gd~~~---------------- 120 (244)
.+++.+||=.|+ |.|..+..+++.. +.+ +++++. +.-++.+++..--.++ ..|+.+
T Consensus 218 ~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~-vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (447)
T 4a0s_A 218 MKQGDIVLIWGASGGLGSYAIQFVKNG-GGI-PVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKL 295 (447)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHH
Confidence 677899999996 4688888888764 467 777776 6666666543111111 112110
Q ss_pred --C----CCc-ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 121 --S----IHV-VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 121 --~----~p~-~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
. ... .|+++-.. .. ..++.+.+.|++||+++++-.
T Consensus 296 ~~~v~~~~g~g~Dvvid~~-----G~----~~~~~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 296 AKLVVEKAGREPDIVFEHT-----GR----VTFGLSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHHHHHHSSCCSEEEECS-----CH----HHHHHHHHHSCTTCEEEESCC
T ss_pred HHHHHHHhCCCceEEEECC-----Cc----hHHHHHHHHHhcCCEEEEEec
Confidence 0 112 37776432 22 246788889999999998754
No 459
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=47.22 E-value=27 Score=27.64 Aligned_cols=82 Identities=13% Similarity=0.061 Sum_probs=45.6
Q ss_pred eEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC-CCcceEEEeccccccCCHH-HH
Q 041308 68 RLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS-IHVVDAIFMKWVLTTWTDD-EC 142 (244)
Q Consensus 68 ~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~-~p~~D~v~~~~~lh~~~~~-~~ 142 (244)
+|.=||+|. |. ++..+.+ +.+ ++++|. +...+..++. .+... + .+. +..+|+|++. .+.+ ..
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~---g~~-V~~~~~~~~~~~~~~~~-g~~~~--~-~~~~~~~~D~vi~~-----v~~~~~~ 69 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR---RFP-TLVWNRTFEKALRHQEE-FGSEA--V-PLERVAEARVIFTC-----LPTTREV 69 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT---TSC-EEEECSSTHHHHHHHHH-HCCEE--C-CGGGGGGCSEEEEC-----CSSHHHH
T ss_pred eEEEEcccHHHHHHHHHHhC---CCe-EEEEeCCHHHHHHHHHC-CCccc--C-HHHHHhCCCEEEEe-----CCChHHH
Confidence 567788874 44 3444444 456 888887 6554443321 22222 1 222 3346988865 3323 24
Q ss_pred HHHHHHHHHHcCCCCEEEEe
Q 041308 143 KLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 143 ~~~l~~~~~~L~pgG~lii~ 162 (244)
..+++++...++||..++..
T Consensus 70 ~~v~~~l~~~l~~~~~vv~~ 89 (289)
T 2cvz_A 70 YEVAEALYPYLREGTYWVDA 89 (289)
T ss_dssp HHHHHHHTTTCCTTEEEEEC
T ss_pred HHHHHHHHhhCCCCCEEEEC
Confidence 56677777788887655543
No 460
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=47.13 E-value=70 Score=25.77 Aligned_cols=86 Identities=10% Similarity=0.070 Sum_probs=41.3
Q ss_pred eEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCHH-HHH
Q 041308 68 RLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTDD-ECK 143 (244)
Q Consensus 68 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~~-~~~ 143 (244)
+|==||.|. ...+..|++.. .+ +++.|. +...+...+. .... ..+..+-....|+|++. ++++ ...
T Consensus 7 kIgfIGLG~MG~~mA~~L~~~G--~~-V~v~dr~~~~~~~l~~~-G~~~-~~s~~e~~~~~dvvi~~-----l~~~~~~~ 76 (297)
T 4gbj_A 7 KIAFLGLGNLGTPIAEILLEAG--YE-LVVWNRTASKAEPLTKL-GATV-VENAIDAITPGGIVFSV-----LADDAAVE 76 (297)
T ss_dssp EEEEECCSTTHHHHHHHHHHTT--CE-EEEC-------CTTTTT-TCEE-CSSGGGGCCTTCEEEEC-----CSSHHHHH
T ss_pred cEEEEecHHHHHHHHHHHHHCC--Ce-EEEEeCCHHHHHHHHHc-CCeE-eCCHHHHHhcCCceeee-----ccchhhHH
Confidence 555666653 23455555543 45 889998 6655544432 2222 12221112335888765 3333 222
Q ss_pred H-HHHHHHHHcCCCCEEEEec
Q 041308 144 L-IMENYYKALLAGRKLIACE 163 (244)
Q Consensus 144 ~-~l~~~~~~L~pgG~lii~d 163 (244)
. +...+...++||+.++-..
T Consensus 77 ~v~~~~~~~~~~~~~iiid~s 97 (297)
T 4gbj_A 77 ELFSMELVEKLGKDGVHVSMS 97 (297)
T ss_dssp HHSCHHHHHHHCTTCEEEECS
T ss_pred HHHHHHHHhhcCCCeEEEECC
Confidence 2 3466888899988665433
No 461
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=46.23 E-value=17 Score=27.47 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=29.0
Q ss_pred ceecCHHHHHHHHHhCCCCeEEEEEccceeEEEeec
Q 041308 194 GKHKTEQEFKQLGFSTGFPHLRAFISIIFTLFLSSK 229 (244)
Q Consensus 194 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~ 229 (244)
+.....++++++|+++||+.++++--.++..+-...
T Consensus 19 ~nkv~MadLr~~l~~lGf~~V~TyI~SGNvvF~s~~ 54 (183)
T 2hiy_A 19 KNKVVMAELRQELTNLGLEKVESYINSGNIFFTSID 54 (183)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEETTTTEEEEEECS
T ss_pred CCcccHHHHHHHHHHcCCccceEEEecCCEEEecCC
Confidence 355678999999999999999998777776665544
No 462
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=46.04 E-value=0.88 Score=38.76 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=49.7
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-C-CCeeEEeCCC---CCCCCcceEEEeccccccCC
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-I-PEVTHIGGDM---FKSIHVVDAIFMKWVLTTWT 138 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-~-~~i~~~~gd~---~~~~p~~D~v~~~~~lh~~~ 138 (244)
+.+|+=+|+| .|..+...++.. +.+ ++++|. +.-++.+++ . ..+.....+. .+.+...|+|+..-..-.-.
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~-Ga~-V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~ 245 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGM-GAT-VTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAK 245 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCE-EEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCC
Confidence 4799999985 455555555544 457 999998 665544432 1 2222211111 01122359888643211100
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 139 DDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+ .-+.++..+.|||||.++.+-
T Consensus 246 t~--~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 246 AP--KLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CC--CCBCHHHHTTSCTTCEEEEGG
T ss_pred Cc--ceecHHHHhcCCCCcEEEEEe
Confidence 00 012356667899999988764
No 463
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=45.50 E-value=62 Score=26.82 Aligned_cols=91 Identities=13% Similarity=0.041 Sum_probs=54.7
Q ss_pred CCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEEeC---CCCCC----CCc-ceEEEeccc
Q 041308 64 KGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHIGG---DMFKS----IHV-VDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~~g---d~~~~----~p~-~D~v~~~~~ 133 (244)
+++.+||=+|+ +.|..+..+++.. +.+ ++++..+.-.+.+++..--.++.. |+.+. .+. .|+|+-.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~-Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~-- 238 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLS-GYI-PIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDC-- 238 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHT-TCE-EEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEES--
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHC-CCE-EEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEEC--
Confidence 56789999998 3788999999875 456 666544555555555422222221 11000 111 3766632
Q ss_pred cccCCHHHHHHHHHHHHHHc-CCCCEEEEecc
Q 041308 134 LTTWTDDECKLIMENYYKAL-LAGRKLIACEP 164 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L-~pgG~lii~d~ 164 (244)
...+ ..++.+.+.| ++||+++++-.
T Consensus 239 ---~g~~---~~~~~~~~~l~~~~G~iv~~g~ 264 (371)
T 3gqv_A 239 ---ITNV---ESTTFCFAAIGRAGGHYVSLNP 264 (371)
T ss_dssp ---SCSH---HHHHHHHHHSCTTCEEEEESSC
T ss_pred ---CCch---HHHHHHHHHhhcCCCEEEEEec
Confidence 2222 4567788889 69999998764
No 464
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=45.45 E-value=88 Score=24.19 Aligned_cols=97 Identities=10% Similarity=0.022 Sum_probs=54.6
Q ss_pred cceEEEEcCCc----cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCC----C--CCCeeEEeCCCCCC--CC--------
Q 041308 66 VKRLVDVGGSA----GD-CLRIILQKHCFICEGINFDL-PEVVAKAP----S--IPEVTHIGGDMFKS--IH-------- 123 (244)
Q Consensus 66 ~~~vLDvG~G~----G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~----~--~~~i~~~~gd~~~~--~p-------- 123 (244)
..++|=.|++. |. ++..|+++ +.+ +++++. +...+... + ..++.++..|+.++ +.
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~--G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEA--GAR-LIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHT--TCE-EEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHC--CCE-EEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 36778888652 22 34455554 345 777765 32222111 1 13789999999765 21
Q ss_pred ---cceEEEecccc----------ccCCHHHHH-----------HHHHHHHHHcCCCCEEEEeccc
Q 041308 124 ---VVDAIFMKWVL----------TTWTDDECK-----------LIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 124 ---~~D~v~~~~~l----------h~~~~~~~~-----------~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.-|+++.+-.. ...+.++.. .+++.+...++++|+++.+-..
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~ 149 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL 149 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 12777654332 223444333 2556677777888999887654
No 465
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=45.44 E-value=11 Score=28.13 Aligned_cols=42 Identities=12% Similarity=-0.122 Sum_probs=28.1
Q ss_pred EEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeE
Q 041308 71 DVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTH 113 (244)
Q Consensus 71 DvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~ 113 (244)
=+.||||.=..-.+.++|+++ +..+--+.....+|+..+.++
T Consensus 82 IliCGTGiG~sIaANKv~GIR-AAlc~d~~sA~~aR~hNnANV 123 (169)
T 3ph3_A 82 IVICGTGLGISIAANKVPGIR-AAVCTNSYMARMSREHNDANI 123 (169)
T ss_dssp EEEESSSHHHHHHHTTSTTCC-EEECSSHHHHHHHHHTTCCSE
T ss_pred EEEcCCcHHHHHHhhcCCCeE-EEEeCCHHHHHHHHHhCCCcE
Confidence 345777776777788899999 766655666666666544333
No 466
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=45.22 E-value=31 Score=28.80 Aligned_cols=89 Identities=10% Similarity=0.053 Sum_probs=52.2
Q ss_pred ceEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------C------CeeEEeCCCCCCCCcceEEEe
Q 041308 67 KRLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-------P------EVTHIGGDMFKSIHVVDAIFM 130 (244)
Q Consensus 67 ~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------~------~i~~~~gd~~~~~p~~D~v~~ 130 (244)
.+|.=||+|. +.++..+++.. .+ +++.|. +..++..++. + ++.+ ..|..+.+..+|+|++
T Consensus 30 mkI~VIGaG~mG~alA~~La~~G--~~-V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea~~~aDvVil 105 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARKG--QK-VRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKASLEGVTDILI 105 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTTT--CC-EEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHHHTTCCEEEE
T ss_pred CeEEEECccHHHHHHHHHHHHCC--Ce-EEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHHHhcCCEEEE
Confidence 5788899873 22344444433 35 888887 6655443321 1 1222 1122111233588886
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
. .+......+++++...++|+..++.+-.
T Consensus 106 a-----Vp~~~~~~vl~~i~~~l~~~~ivvs~~k 134 (356)
T 3k96_A 106 V-----VPSFAFHEVITRMKPLIDAKTRIAWGTK 134 (356)
T ss_dssp C-----CCHHHHHHHHHHHGGGCCTTCEEEECCC
T ss_pred C-----CCHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 5 5666778889999999998877765543
No 467
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=45.19 E-value=46 Score=28.79 Aligned_cols=94 Identities=10% Similarity=-0.026 Sum_probs=51.3
Q ss_pred cceEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------------------CCeeEEeCCCCCCCC
Q 041308 66 VKRLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSI-------------------PEVTHIGGDMFKSIH 123 (244)
Q Consensus 66 ~~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------------------~~i~~~~gd~~~~~p 123 (244)
.-++-=||.|. |. ++..|++. +.+ ++++|. +..++..++. .++.+ ..|..+...
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~--G~~-V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~~ 83 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDF--GHE-VVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEGVK 83 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCE-EEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHHT
T ss_pred ceEEEEEcCCHHHHHHHHHHHHC--CCE-EEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHHHh
Confidence 34677777773 33 34444444 345 899998 7666655542 12332 122211123
Q ss_pred cceEEEeccccc-----c-CCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 124 VVDAIFMKWVLT-----T-WTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 124 ~~D~v~~~~~lh-----~-~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
.+|+|+++---- . .+-.....+++.+.+.|+||..++...
T Consensus 84 ~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S 129 (446)
T 4a7p_A 84 DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS 129 (446)
T ss_dssp TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS
T ss_pred cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 358888762111 1 111246677889999998876665543
No 468
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=44.82 E-value=20 Score=34.64 Aligned_cols=126 Identities=11% Similarity=-0.057 Sum_probs=73.3
Q ss_pred CcceEEEEcCCccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-CCeeEEeCCC------------CC----CCCc--
Q 041308 65 GVKRLVDVGGSAGDCLRIILQKHCFICEGINFDL-PEVVAKAPSI-PEVTHIGGDM------------FK----SIHV-- 124 (244)
Q Consensus 65 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-~~i~~~~gd~------------~~----~~p~-- 124 (244)
...+++|+=||.|.++..+.+.+-. +.+.++|+ +..++.-+.+ +...+..+|+ .+ .+|.
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~-~vv~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~~~ 617 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGIS-DTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKG 617 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSE-EEEEEECSSHHHHHHHHHHCTTSEEECSCHHHHHHHHHHTCSBCTTCCBCCCTT
T ss_pred CCCeEEEeccCccHHHHHHHHCCCC-ceEEEEECCHHHHHHHHHhCCCCccccccHHHHhhhccchhhhhhhhhhcccCC
Confidence 3468999999999999999887531 21567888 6665544432 4555555553 21 1442
Q ss_pred -ceEEEeccccccCCHH----------HHHHH---HHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhh
Q 041308 125 -VDAIFMKWVLTTWTDD----------ECKLI---MENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIY 190 (244)
Q Consensus 125 -~D~v~~~~~lh~~~~~----------~~~~~---l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~ 190 (244)
.|+++...-+..|+.. ..-.+ +-++.+.++| +++++|.+..-..
T Consensus 618 ~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~riv~~~rP--k~~llENV~glls-------------------- 675 (1002)
T 3swr_A 618 DVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRP--RFFLLENVRNFVS-------------------- 675 (1002)
T ss_dssp TCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHHHHHHCC--SEEEEEEEGGGGT--------------------
T ss_pred CeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHHHHHHhCC--CEEEEeccHHHhc--------------------
Confidence 4999877666555421 11112 2345556677 5677776532110
Q ss_pred ccCceecCHHHHHHHHHhCCCCeEE
Q 041308 191 RAKGKHKTEQEFKQLGFSTGFPHLR 215 (244)
Q Consensus 191 ~~~~~~~t~~e~~~ll~~aGf~~~~ 215 (244)
.....+...+.+.|++.|+.+..
T Consensus 676 --~~~~~~~~~i~~~L~~lGY~v~~ 698 (1002)
T 3swr_A 676 --FKRSMVLKLTLRCLVRMGYQCTF 698 (1002)
T ss_dssp --TGGGHHHHHHHHHHHHHTCEEEE
T ss_pred --cCcchHHHHHHHHHHhcCCeEEE
Confidence 00012245677788899998654
No 469
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=43.49 E-value=10 Score=29.48 Aligned_cols=43 Identities=14% Similarity=-0.080 Sum_probs=29.9
Q ss_pred EEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeE
Q 041308 70 VDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTH 113 (244)
Q Consensus 70 LDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~ 113 (244)
-=+.||||.=..-.+.++|+++ +..+--+.....+|+..+.++
T Consensus 70 GIliCGTGiG~siaANKv~GIR-AAlc~d~~sA~laR~hNnANV 112 (214)
T 3ono_A 70 VVTGCGTGQGALMSCNLHPGVV-CGYCLEPSDAFLFNQINNGNA 112 (214)
T ss_dssp EEEEESSSHHHHHHHHTSTTCC-EEECSSHHHHHHHHHHTCCSE
T ss_pred EEEEcCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHHcCCcE
Confidence 3466888877788889999999 766655666666676433333
No 470
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=43.05 E-value=9.1 Score=29.78 Aligned_cols=42 Identities=14% Similarity=-0.108 Sum_probs=29.4
Q ss_pred EEEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCee
Q 041308 70 VDVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVT 112 (244)
Q Consensus 70 LDvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~ 112 (244)
-=+.||||.=..-.+.++|+++ +..+--+.....+|+..+.+
T Consensus 71 GIliCGTGiG~sIAANKv~GIR-AAlc~d~~sA~laR~HNnAN 112 (216)
T 2ppw_A 71 VVTGCGTGVGAMLALNSFPGVV-CGLAVDPTDAYLYSQINGGN 112 (216)
T ss_dssp EEEEESSSHHHHHHHTTSTTCC-EEECSSHHHHHHHHHHTCCS
T ss_pred EEEEcCCcHHHHHHhhcCCCeE-EEEeCCHHHHHHHHHhcCce
Confidence 3456888877788889999999 76665566666666643333
No 471
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Probab=42.99 E-value=34 Score=28.84 Aligned_cols=32 Identities=3% Similarity=0.015 Sum_probs=21.7
Q ss_pred ceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 125 VDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 125 ~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
+|+|++.- +......+++++...++|+..++.
T Consensus 83 aD~Vilav-----~~~~~~~v~~~l~~~l~~~~ivv~ 114 (404)
T 3c7a_A 83 ADVVILTV-----PAFAHEGYFQAMAPYVQDSALIVG 114 (404)
T ss_dssp CSEEEECS-----CGGGHHHHHHHHTTTCCTTCEEEE
T ss_pred CCEEEEeC-----chHHHHHHHHHHHhhCCCCcEEEE
Confidence 58888763 333345778888888888765544
No 472
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=42.75 E-value=57 Score=28.27 Aligned_cols=90 Identities=18% Similarity=0.211 Sum_probs=51.8
Q ss_pred CCcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHH-HhCCCCCCeeEEeCCCCCC--CC-----cceEEEeccc
Q 041308 64 KGVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVV-AKAPSIPEVTHIGGDMFKS--IH-----VVDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i-~~a~~~~~i~~~~gd~~~~--~p-----~~D~v~~~~~ 133 (244)
++..+|+=+|+|. |..+...++. +.+ +.+++. ++.. ..+++.++..++.||..+. +. .+|+++..
T Consensus 233 ~~~~~v~I~GgG~ig~~lA~~L~~--~~~-v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~-- 307 (461)
T 4g65_A 233 KPYRRIMIVGGGNIGASLAKRLEQ--TYS-VKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIAL-- 307 (461)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHTT--TSE-EEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEEC--
T ss_pred ccccEEEEEcchHHHHHHHHHhhh--cCc-eEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEc--
Confidence 3457899998873 4433333332 234 667766 4433 3444568899999999875 32 25888754
Q ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 134 LTTWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 134 lh~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
..+++.--+..-+++.+...-.+..
T Consensus 308 ---T~~De~Ni~~~llAk~~gv~kvIa~ 332 (461)
T 4g65_A 308 ---TNEDETNIMSAMLAKRMGAKKVMVL 332 (461)
T ss_dssp ---CSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ---ccCcHHHHHHHHHHHHcCCcccccc
Confidence 2234433445556666655433333
No 473
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=42.72 E-value=11 Score=29.64 Aligned_cols=39 Identities=10% Similarity=-0.172 Sum_probs=26.6
Q ss_pred EEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCC
Q 041308 71 DVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPE 110 (244)
Q Consensus 71 DvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~ 110 (244)
=+.||||.=..-.+.++|+++ +..+--+.....+|+..+
T Consensus 88 IliCGTGiG~sIAANKv~GIR-AAlc~d~~sA~laR~HNn 126 (231)
T 3c5y_A 88 VTGCGTGMGSMLAANAMPGVF-CGLVIDPTDAFLFGQIND 126 (231)
T ss_dssp EEEESSSHHHHHHHHTSTTCC-EEECCSHHHHHHHHHHTC
T ss_pred EEEcCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHhcC
Confidence 456777777777788899998 766655666666665433
No 474
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=42.65 E-value=8.5 Score=28.10 Aligned_cols=37 Identities=14% Similarity=-0.022 Sum_probs=27.2
Q ss_pred EEcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCC
Q 041308 71 DVGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSI 108 (244)
Q Consensus 71 DvG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~ 108 (244)
=+.||||.=..-.+.++|+++ +..+--+.....+|+.
T Consensus 63 IliCGTGiG~siaANKv~GIR-Aal~~d~~sA~~ar~h 99 (149)
T 2vvr_A 63 ILICGTGVGISIAANKFAGIR-AVVCSEPYSAQLSRQN 99 (149)
T ss_dssp EEEESSSHHHHHHHHTSTTCC-EEECSSHHHHHHHHHH
T ss_pred EEEeCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHh
Confidence 455777777778889999999 7666556666667764
No 475
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=42.46 E-value=23 Score=29.49 Aligned_cols=83 Identities=8% Similarity=0.061 Sum_probs=49.1
Q ss_pred cceEEEEcCC--ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCc----ceEEEeccccccCC
Q 041308 66 VKRLVDVGGS--AGDCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHV----VDAIFMKWVLTTWT 138 (244)
Q Consensus 66 ~~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~----~D~v~~~~~lh~~~ 138 (244)
..+|.=||+| .+.++..+.+.. .+ +++.|. +..++.+++. .+.. ..|..+.+.. +|+|++. .+
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G--~~-V~~~dr~~~~~~~a~~~-G~~~-~~~~~e~~~~a~~~aDlVila-----vP 77 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAAN--HS-VFGYNRSRSGAKSAVDE-GFDV-SADLEATLQRAAAEDALIVLA-----VP 77 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTT--CC-EEEECSCHHHHHHHHHT-TCCE-ESCHHHHHHHHHHTTCEEEEC-----SC
T ss_pred CCEEEEEeecHHHHHHHHHHHHCC--CE-EEEEeCCHHHHHHHHHc-CCee-eCCHHHHHHhcccCCCEEEEe-----CC
Confidence 3578888887 344555555543 56 899998 7776665542 2222 2222111222 3888865 45
Q ss_pred HHHHHHHHHHHHHHcCCCCEE
Q 041308 139 DDECKLIMENYYKALLAGRKL 159 (244)
Q Consensus 139 ~~~~~~~l~~~~~~L~pgG~l 159 (244)
......+++++... +||..+
T Consensus 78 ~~~~~~vl~~l~~~-~~~~iv 97 (341)
T 3ktd_A 78 MTAIDSLLDAVHTH-APNNGF 97 (341)
T ss_dssp HHHHHHHHHHHHHH-CTTCCE
T ss_pred HHHHHHHHHHHHcc-CCCCEE
Confidence 56667788888775 787543
No 476
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=42.45 E-value=54 Score=26.48 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=38.8
Q ss_pred cceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--CC----cceEEEecccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--IH----VVDAIFMKWVLTT 136 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~p----~~D~v~~~~~lh~ 136 (244)
..+||=.| |+|.++.++++.. .+.+ +++++. +.- .++.++.+|+.+. +. ..|+|+-......
T Consensus 19 ~~~vlVtG-atG~iG~~l~~~L~~~G~~-V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~ 89 (347)
T 4id9_A 19 SHMILVTG-SAGRVGRAVVAALRTQGRT-VRGFDLRPSG-------TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFMS 89 (347)
T ss_dssp --CEEEET-TTSHHHHHHHHHHHHTTCC-EEEEESSCCS-------SCCSEEESCTTCHHHHHHHHTTCSEEEECCCCCC
T ss_pred CCEEEEEC-CCChHHHHHHHHHHhCCCE-EEEEeCCCCC-------CCccEEecCcCCHHHHHHHHhCCCEEEECCcccC
Confidence 45677665 5677776666553 2356 888886 321 6788999999765 22 2388875544443
Q ss_pred CC
Q 041308 137 WT 138 (244)
Q Consensus 137 ~~ 138 (244)
..
T Consensus 90 ~~ 91 (347)
T 4id9_A 90 WA 91 (347)
T ss_dssp SS
T ss_pred cc
Confidence 33
No 477
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=42.23 E-value=15 Score=27.60 Aligned_cols=42 Identities=10% Similarity=-0.050 Sum_probs=28.6
Q ss_pred EcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeEE
Q 041308 72 VGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTHI 114 (244)
Q Consensus 72 vG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~~ 114 (244)
+.||||.=..-.+.++|+++ +..+--+.....+|+..+.+++
T Consensus 87 liCGTGiG~sIaANKv~GIR-AAlc~d~~sA~laR~HNnANVL 128 (179)
T 3k7p_A 87 LAAGSGIGMSIAANKVPGVR-AALCHDHYTAAMSRIHNDANIV 128 (179)
T ss_dssp EEESSSHHHHHHHHTSTTCC-EEECCSHHHHHHHHHTTCCSEE
T ss_pred EEccCcHHHhhHhhcCCCeE-EEEeCCHHHHHHHHHhCCCcEE
Confidence 45777776777888999999 7666556666667765444433
No 478
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=41.99 E-value=1.1e+02 Score=25.04 Aligned_cols=98 Identities=9% Similarity=0.057 Sum_probs=49.9
Q ss_pred CCcceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHh-C----CC---CCCeeEEeCCCCCCCCcceEEEeccc
Q 041308 64 KGVKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAK-A----PS---IPEVTHIGGDMFKSIHVVDAIFMKWV 133 (244)
Q Consensus 64 ~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~-a----~~---~~~i~~~~gd~~~~~p~~D~v~~~~~ 133 (244)
++..+|.=+|+| .|......+...+-...++.+|+ ++.++. + .. ..++++..++ .+.+..+|+|++.--
T Consensus 7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~-~~a~~~aDvVii~ag 85 (326)
T 2zqz_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAE-YSDAKDADLVVITAG 85 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC-GGGGGGCSEEEECCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECC-HHHhCCCCEEEEcCC
Confidence 345789999986 33333333333333323888897 433321 1 11 1355555533 233566799987754
Q ss_pred cccCCH---H----HHHHHHHHHHHHc---CCCCEEEEe
Q 041308 134 LTTWTD---D----ECKLIMENYYKAL---LAGRKLIAC 162 (244)
Q Consensus 134 lh~~~~---~----~~~~~l~~~~~~L---~pgG~lii~ 162 (244)
.-.-+- . ....+++++.+.+ .|.++++++
T Consensus 86 ~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~ 124 (326)
T 2zqz_A 86 APQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA 124 (326)
T ss_dssp CC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 322110 0 1123444444433 699999985
No 479
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=41.76 E-value=76 Score=24.69 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=48.7
Q ss_pred EcCCccHHHHHHHHHcC----CCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--CC----cceEEEeccccccCCHH
Q 041308 72 VGGSAGDCLRIILQKHC----FICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--IH----VVDAIFMKWVLTTWTDD 140 (244)
Q Consensus 72 vG~G~G~~~~~l~~~~p----~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~p----~~D~v~~~~~lh~~~~~ 140 (244)
|=||+|..+.++++..- +.+ +++++. +.-.+... ..+++++.+|+.++ +. ..|+|+.....+ ..++
T Consensus 5 VtGatG~iG~~l~~~L~~~~~g~~-V~~~~r~~~~~~~l~-~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~-~~~~ 81 (287)
T 2jl1_A 5 VTGATGQLGGLVIQHLLKKVPASQ-IIAIVRNVEKASTLA-DQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPH-YDNT 81 (287)
T ss_dssp ETTTTSHHHHHHHHHHTTTSCGGG-EEEEESCTTTTHHHH-HTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCC-SCHH
T ss_pred EEcCCchHHHHHHHHHHHhCCCCe-EEEEEcCHHHHhHHh-hcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCC-cCch
Confidence 44678888888877643 346 888886 32211111 14788999999764 22 248877544332 2221
Q ss_pred HHHHHHHHHHHHcCC-C-CEEEEecc
Q 041308 141 ECKLIMENYYKALLA-G-RKLIACEP 164 (244)
Q Consensus 141 ~~~~~l~~~~~~L~p-g-G~lii~d~ 164 (244)
.......++.++++. | ++++.+..
T Consensus 82 ~n~~~~~~l~~a~~~~~~~~~v~~Ss 107 (287)
T 2jl1_A 82 LLIVQHANVVKAARDAGVKHIAYTGY 107 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 122333444444432 3 47776554
No 480
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=41.28 E-value=21 Score=28.74 Aligned_cols=91 Identities=7% Similarity=0.003 Sum_probs=50.7
Q ss_pred ceEEEEcCCc--cHHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCC--CeeEEeCCCCCCC-CcceEEEeccccccCCHH
Q 041308 67 KRLVDVGGSA--GDCLRIILQKHCFICEGINFDL-PEVVAKAPSIP--EVTHIGGDMFKSI-HVVDAIFMKWVLTTWTDD 140 (244)
Q Consensus 67 ~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~--~i~~~~gd~~~~~-p~~D~v~~~~~lh~~~~~ 140 (244)
.+|+=||+|. +.++..|.+... + ++.++. ++.++..+... ...+. .|..+.. ..+|+|++. .+..
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~--~-V~~~~r~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~D~vila-----vk~~ 73 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLP--H-TTLIGRHAKTITYYTVPHAPAQDIV-VKGYEDVTNTFDVIIIA-----VKTH 73 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCT--T-CEEEESSCEEEEEESSTTSCCEEEE-EEEGGGCCSCEEEEEEC-----SCGG
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC--e-EEEEEeccCcEEEEecCCeecccee-cCchHhcCCCCCEEEEe-----CCcc
Confidence 3678889882 345666666653 4 677776 43333222211 11221 1221222 346988866 3333
Q ss_pred HHHHHHHHHHHHcCCCCEEEEecccC
Q 041308 141 ECKLIMENYYKALLAGRKLIACEPVL 166 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~~~ 166 (244)
+...+++.+...++|+..++.+-..+
T Consensus 74 ~~~~~l~~l~~~l~~~~~iv~~~nGi 99 (294)
T 3g17_A 74 QLDAVIPHLTYLAHEDTLIILAQNGY 99 (294)
T ss_dssp GHHHHGGGHHHHEEEEEEEEECCSSC
T ss_pred CHHHHHHHHHHhhCCCCEEEEeccCc
Confidence 45677888888898887777655433
No 481
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=41.01 E-value=56 Score=26.89 Aligned_cols=91 Identities=9% Similarity=0.043 Sum_probs=50.5
Q ss_pred CCCcceEEEEcC--CccHHHHHHHHHcCCCCeEEEeec-hH---HHHhCCCCCCeeEEeC------CCCCCCC---cceE
Q 041308 63 FKGVKRLVDVGG--SAGDCLRIILQKHCFICEGINFDL-PE---VVAKAPSIPEVTHIGG------DMFKSIH---VVDA 127 (244)
Q Consensus 63 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~~D~-~~---~i~~a~~~~~i~~~~g------d~~~~~p---~~D~ 127 (244)
.+++.+||=+|+ |.|.++..+++.. +.+.++.++. +. ..+.+++..--.++.. ++.+... ..|+
T Consensus 165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dv 243 (357)
T 1zsy_A 165 LQPGDSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRL 243 (357)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSE
T ss_pred cCCCCEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceE
Confidence 677899999995 5888999999875 4551344443 21 2333333211111111 1111111 2477
Q ss_pred EEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 128 IFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 128 v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
|+-. ...+. +.+..+.|+|||+++++-
T Consensus 244 vid~-----~g~~~----~~~~~~~l~~~G~iv~~G 270 (357)
T 1zsy_A 244 ALNC-----VGGKS----STELLRQLARGGTMVTYG 270 (357)
T ss_dssp EEES-----SCHHH----HHHHHTTSCTTCEEEECC
T ss_pred EEEC-----CCcHH----HHHHHHhhCCCCEEEEEe
Confidence 6632 23332 245788999999999874
No 482
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=40.90 E-value=1.2e+02 Score=24.74 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=49.1
Q ss_pred CcceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHh-CCC-------CCCeeEEeCCCCCCCCcceEEEecccc
Q 041308 65 GVKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAK-APS-------IPEVTHIGGDMFKSIHVVDAIFMKWVL 134 (244)
Q Consensus 65 ~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~-a~~-------~~~i~~~~gd~~~~~p~~D~v~~~~~l 134 (244)
...+|.=+|+|. |......+...+-...++.+|+ ++.++. +.+ ..++++..++ .+.+..+|+|++.--.
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~-~~a~~~aDvVii~ag~ 82 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGE-YSDCKDADLVVITAGA 82 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECC-GGGGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECC-HHHhCCCCEEEECCCC
Confidence 346888999863 3332233333332323888897 543331 111 1355555533 2346667998877543
Q ss_pred ccCCH-------HHHHHHHHHHHHHc---CCCCEEEEe
Q 041308 135 TTWTD-------DECKLIMENYYKAL---LAGRKLIAC 162 (244)
Q Consensus 135 h~~~~-------~~~~~~l~~~~~~L---~pgG~lii~ 162 (244)
-.-+- .....+++++.+.+ .|.++++++
T Consensus 83 ~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~ 120 (318)
T 1ez4_A 83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA 120 (318)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 22110 01224455444433 799999985
No 483
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=40.54 E-value=83 Score=27.78 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=50.5
Q ss_pred ceEEEEcCCccHHHHHHHHHc--CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--C-----CcceEEEecccccc
Q 041308 67 KRLVDVGGSAGDCLRIILQKH--CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--I-----HVVDAIFMKWVLTT 136 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~-----p~~D~v~~~~~lh~ 136 (244)
.+++=+|+| .++..+++.. .+.. ++++|. ++.++.. . .++.||..++ + ..+|+++...
T Consensus 349 ~~viIiG~G--~~G~~la~~L~~~g~~-v~vid~d~~~~~~~---~--~~i~gD~t~~~~L~~agi~~ad~vi~~~---- 416 (565)
T 4gx0_A 349 ELIFIIGHG--RIGCAAAAFLDRKPVP-FILIDRQESPVCND---H--VVVYGDATVGQTLRQAGIDRASGIIVTT---- 416 (565)
T ss_dssp CCEEEECCS--HHHHHHHHHHHHTTCC-EEEEESSCCSSCCS---S--CEEESCSSSSTHHHHHTTTSCSEEEECC----
T ss_pred CCEEEECCC--HHHHHHHHHHHHCCCC-EEEEECChHHHhhc---C--CEEEeCCCCHHHHHhcCccccCEEEEEC----
Confidence 788888885 3333333332 2456 899998 6554332 2 7889999765 2 2358777552
Q ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 137 WTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 137 ~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
++++.--+.....+.+.|.-+++..
T Consensus 417 -~~d~~ni~~~~~ak~l~~~~~iiar 441 (565)
T 4gx0_A 417 -NDDSTNIFLTLACRHLHSHIRIVAR 441 (565)
T ss_dssp -SCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred -CCchHHHHHHHHHHHHCCCCEEEEE
Confidence 2334344566677778887666553
No 484
>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A
Probab=40.16 E-value=40 Score=32.91 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=56.8
Q ss_pred ceEEEEcCCccHHHHHHHHHcC-CCCeEEEeec-hHHHHhCCCCCC-eeEEeCCCCCC-C---CcceEEEeccccccCC-
Q 041308 67 KRLVDVGGSAGDCLRIILQKHC-FICEGINFDL-PEVVAKAPSIPE-VTHIGGDMFKS-I---HVVDAIFMKWVLTTWT- 138 (244)
Q Consensus 67 ~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-~~~i~~a~~~~~-i~~~~gd~~~~-~---p~~D~v~~~~~lh~~~- 138 (244)
.++||+|.|.-. .++...| +.. ++.+|. |-....+-=... -+|+.+|+..+ + ..+|++.+...|..-.
T Consensus 829 ~~~lDLGTGPEc---RiLsliP~~~p-vtmvD~RP~ae~~~~w~~~~T~yi~~DYl~~~~~~~~~~d~vtailSLGAA~a 904 (1299)
T 3iyl_W 829 AHLLDLGTGPEC---RILSLIPPTLQ-VTMSDSRPCAELMASFDPALTAYVQGDYSTAAFWNGIRCDSATAIFTIGAAAA 904 (1299)
T ss_dssp CSEEEETCCSSC---SGGGSSCTTSC-EEEEESSCCSSCGGGBCTTTEEEEESCSSSGGGGSSCCCSEEEETTTHHHHHH
T ss_pred CEEEEcCCCccc---eeeecCCCCCc-eEEEecCCccccccccccccceeEEeccccceeEecCCCCEEEEeeechhhhh
Confidence 899999988763 3334445 556 999998 644332222356 89999999887 2 2359999988884311
Q ss_pred --HHHHHHHHHHHHHHcCCCC
Q 041308 139 --DDECKLIMENYYKALLAGR 157 (244)
Q Consensus 139 --~~~~~~~l~~~~~~L~pgG 157 (244)
.-.....++++.+..++.|
T Consensus 905 ~a~~tl~~~l~~~l~~~~~~~ 925 (1299)
T 3iyl_W 905 AAGTDLIAFVQQLIPRIVAAG 925 (1299)
T ss_dssp HTTCCHHHHHHHHHHHHHHTT
T ss_pred hCCCcHHHHHHHHHHHHHhcC
Confidence 1113456777777777643
No 485
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=39.73 E-value=17 Score=27.40 Aligned_cols=41 Identities=15% Similarity=-0.082 Sum_probs=25.5
Q ss_pred EcCCccHHHHHHHHHcCCCCeEEEeechHHHHhCCCCCCeeE
Q 041308 72 VGGSAGDCLRIILQKHCFICEGINFDLPEVVAKAPSIPEVTH 113 (244)
Q Consensus 72 vG~G~G~~~~~l~~~~p~~~~~~~~D~~~~i~~a~~~~~i~~ 113 (244)
+-||||.=..-.+.++|+++ +..+--+.....+|+..+.++
T Consensus 95 liCGTGiG~sIaANKv~GIR-AAlc~d~~sA~laR~HNnANV 135 (184)
T 3sgw_A 95 MICGTGLGVAISANKVPGIR-AVTAHDTFSVERAILSNDAQV 135 (184)
T ss_dssp EEESSSHHHHHHHHTSTTCC-EEECCSHHHHHHHHHTTCCSE
T ss_pred EEcCCcHHHhhhhhcCCCeE-EEEeCCHHHHHHHHHhCCCcE
Confidence 44666666666778888888 665555556666665433333
No 486
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=39.48 E-value=11 Score=31.72 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=48.1
Q ss_pred cceEEEEcCC-ccHHHHHHHHHcCCCCeEEEeec-hHHHHhCCC-C-CCeeEEeCCCCCC----CCcceEEEeccccccC
Q 041308 66 VKRLVDVGGS-AGDCLRIILQKHCFICEGINFDL-PEVVAKAPS-I-PEVTHIGGDMFKS----IHVVDAIFMKWVLTTW 137 (244)
Q Consensus 66 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~-~-~~i~~~~gd~~~~----~p~~D~v~~~~~lh~~ 137 (244)
+.+|+=+|+| .|..+...++.. +.+ ++++|. +.-++.+++ . ..+.....+. +. +...|+|+..-.....
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~-Ga~-V~~~d~~~~~~~~~~~~~g~~~~~~~~~~-~~l~~~~~~~DvVi~~~g~~~~ 242 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGM-GAQ-VTILDVNHKRLQYLDDVFGGRVITLTATE-ANIKKSVQHADLLIGAVLVPGA 242 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHHTTTSEEEEECCH-HHHHHHHHHCSEEEECCC----
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCE-EEEEECCHHHHHHHHHhcCceEEEecCCH-HHHHHHHhCCCEEEECCCCCcc
Confidence 3799999985 344444444443 457 999998 655544332 1 2222211111 11 1224988754332110
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEEec
Q 041308 138 TDDECKLIMENYYKALLAGRKLIACE 163 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii~d 163 (244)
....-+.++..+.|+|||.++.+-
T Consensus 243 --~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 243 --KAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp -----CCSCHHHHTTSCTTCEEEECC
T ss_pred --ccchhHHHHHHHhhcCCCEEEEEe
Confidence 000112466778899999887654
No 487
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=39.45 E-value=31 Score=29.93 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=56.1
Q ss_pred cceEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCCC-------------------CCeeEEeCCCCCCCC
Q 041308 66 VKRLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPSI-------------------PEVTHIGGDMFKSIH 123 (244)
Q Consensus 66 ~~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~-------------------~~i~~~~gd~~~~~p 123 (244)
-.+|-=||.|. |. ++..+++.+ .+ ++++|+ +..++..++. .++.|. .|..+.+.
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~G--~~-V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~t-t~~~~ai~ 96 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALLG--HR-VVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFA-ESAEEAVA 96 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHT--CE-EEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEC-SSHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhCC--Cc-EEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEE-cCHHHHHh
Confidence 35788888873 43 344455443 45 999999 7776655431 223321 11111122
Q ss_pred cceEEEecccc----cc-CCHHHHHHHHHHHHHHcCC--CCEEEEecccCCCC
Q 041308 124 VVDAIFMKWVL----TT-WTDDECKLIMENYYKALLA--GRKLIACEPVLPDD 169 (244)
Q Consensus 124 ~~D~v~~~~~l----h~-~~~~~~~~~l~~~~~~L~p--gG~lii~d~~~~~~ 169 (244)
.+|+++++--- +. .+-.......+.+.+.|++ .|.+++.+.+.+..
T Consensus 97 ~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppG 149 (444)
T 3vtf_A 97 ATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPG 149 (444)
T ss_dssp TSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTT
T ss_pred cCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCc
Confidence 34777654211 11 1122355778888888986 46788888877665
No 488
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}
Probab=39.44 E-value=26 Score=29.30 Aligned_cols=90 Identities=8% Similarity=0.009 Sum_probs=50.4
Q ss_pred ceEEEEcCCc-cH-HHHHHHHHc---C--CCCeEEEeec-hH-----HHHhCCC------C-------CCeeEEeCCCCC
Q 041308 67 KRLVDVGGSA-GD-CLRIILQKH---C--FICEGINFDL-PE-----VVAKAPS------I-------PEVTHIGGDMFK 120 (244)
Q Consensus 67 ~~vLDvG~G~-G~-~~~~l~~~~---p--~~~~~~~~D~-~~-----~i~~a~~------~-------~~i~~~~gd~~~ 120 (244)
.+|.=||+|. |. ++..+++.. | ..+ ++++|. +. .++..++ . .++.+ ..|..+
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~-~~~~~e 99 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENE-VRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA-HSDLAS 99 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSC-EEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE-ESSTHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCe-EEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE-ECCHHH
Confidence 4788899984 33 455666654 0 135 788887 54 3322211 0 12222 122211
Q ss_pred CCCcceEEEeccccccCCHHHHHHHHHHHHH----HcCCCCEEEEec
Q 041308 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYK----ALLAGRKLIACE 163 (244)
Q Consensus 121 ~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~----~L~pgG~lii~d 163 (244)
....+|+|++. +++.....+++++.. .++|+..++.+-
T Consensus 100 a~~~aDvVila-----v~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~ 141 (375)
T 1yj8_A 100 VINDADLLIFI-----VPCQYLESVLASIKESESIKIASHAKAISLT 141 (375)
T ss_dssp HHTTCSEEEEC-----CCHHHHHHHHHHHTC---CCCCTTCEEEECC
T ss_pred HHcCCCEEEEc-----CCHHHHHHHHHHHhhhhhccCCCCCEEEEeC
Confidence 12335988876 555667778888877 788877666543
No 489
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=39.01 E-value=61 Score=26.54 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=49.3
Q ss_pred cceEEEEcCCc-cHHHHHHHHHcCCCCeEEEeec-hHHHHhCC----C-----CCCeeEEe-CCCCCCCCcceEEEeccc
Q 041308 66 VKRLVDVGGSA-GDCLRIILQKHCFICEGINFDL-PEVVAKAP----S-----IPEVTHIG-GDMFKSIHVVDAIFMKWV 133 (244)
Q Consensus 66 ~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~----~-----~~~i~~~~-gd~~~~~p~~D~v~~~~~ 133 (244)
..+|.=||+|. |.....++....... ++.+|+ ++.++... . ....++.. .|+ +.+..+|+|+..--
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g 81 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAG 81 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence 35788899863 333223333322237 888997 54333111 1 01233333 565 55666799887742
Q ss_pred cc---cCC-------------HHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 134 LT---TWT-------------DDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 134 lh---~~~-------------~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.- ..+ -+-...+.+++.+.. |.+.++++
T Consensus 82 ~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~ 125 (322)
T 1t2d_A 82 FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVV 125 (322)
T ss_dssp CSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEEC
T ss_pred CCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 11 111 012445566666654 99998875
No 490
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=38.61 E-value=50 Score=24.72 Aligned_cols=91 Identities=19% Similarity=0.065 Sum_probs=52.2
Q ss_pred eEEEEcCCccHHHHHHHHHcC--CCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCC-C--C----CcceEEEecccccc-
Q 041308 68 RLVDVGGSAGDCLRIILQKHC--FICEGINFDL-PEVVAKAPSIPEVTHIGGDMFK-S--I----HVVDAIFMKWVLTT- 136 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~p--~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~-~--~----p~~D~v~~~~~lh~- 136 (244)
+||=. ||+|.....+++..- +.+ +++++. +.- .....+++++.+|+.+ . + ...|+|+.......
T Consensus 2 ~ilIt-GatG~iG~~l~~~L~~~g~~-V~~~~R~~~~---~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~~ 76 (219)
T 3dqp_A 2 KIFIV-GSTGRVGKSLLKSLSTTDYQ-IYAGARKVEQ---VPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGGK 76 (219)
T ss_dssp EEEEE-STTSHHHHHHHHHHTTSSCE-EEEEESSGGG---SCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTTS
T ss_pred eEEEE-CCCCHHHHHHHHHHHHCCCE-EEEEECCccc---hhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCCC
Confidence 45544 467888888887753 345 888888 532 2233789999999987 3 2 22488885544321
Q ss_pred ----CCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 137 ----WTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 137 ----~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
..-.-...+++.+.+. ..++++.+-..
T Consensus 77 ~~~~~n~~~~~~l~~a~~~~--~~~~iv~~SS~ 107 (219)
T 3dqp_A 77 SLLKVDLYGAVKLMQAAEKA--EVKRFILLSTI 107 (219)
T ss_dssp SCCCCCCHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CcEeEeHHHHHHHHHHHHHh--CCCEEEEECcc
Confidence 1112233444444321 23577776553
No 491
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=38.09 E-value=10 Score=31.03 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCCCEEEEecc
Q 041308 141 ECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 141 ~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
+....|..+.+.|+|||+++++..
T Consensus 223 ~l~~~l~~~~~~l~~ggr~~visf 246 (301)
T 1m6y_A 223 NLKEFLKKAEDLLNPGGRIVVISF 246 (301)
T ss_dssp HHHHHHHHGGGGEEEEEEEEEEES
T ss_pred HHHHHHHHHHHhhCCCCEEEEEec
Confidence 455688899999999999999875
No 492
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=37.32 E-value=94 Score=24.99 Aligned_cols=92 Identities=9% Similarity=-0.029 Sum_probs=47.5
Q ss_pred eEEEEcCCc-cH-HHHHHHHHcCCCCeEEEeec-hHHHHhCCC---------CCCeeEEeCCCCCCCCcceEEEeccccc
Q 041308 68 RLVDVGGSA-GD-CLRIILQKHCFICEGINFDL-PEVVAKAPS---------IPEVTHIGGDMFKSIHVVDAIFMKWVLT 135 (244)
Q Consensus 68 ~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~---------~~~i~~~~gd~~~~~p~~D~v~~~~~lh 135 (244)
+|.=||+|. |. ++..+++....-+ ++.+|. +..++.... ..++.+...|. +.+..+|+|++.---.
T Consensus 3 kI~VIGaG~~G~~la~~L~~~g~~~~-V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~ 80 (309)
T 1hyh_A 3 KIGIIGLGNVGAAVAHGLIAQGVADD-YVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI 80 (309)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSE-EEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCE-EEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence 577788773 22 4444555432125 888897 544432211 02345434565 4455679988765433
Q ss_pred cC----CHH-----------HHHHHHHHHHHHcCCCCEEEEe
Q 041308 136 TW----TDD-----------ECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 136 ~~----~~~-----------~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.- +.. -...+++++.+. .|.+.++++
T Consensus 81 ~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~~~~~ii~~ 121 (309)
T 1hyh_A 81 KLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVI 121 (309)
T ss_dssp GGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEEC
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEE
Confidence 21 110 023445555543 478887764
No 493
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Probab=37.06 E-value=46 Score=25.86 Aligned_cols=60 Identities=8% Similarity=-0.006 Sum_probs=33.3
Q ss_pred eEEEEcCCc-c-HHHHHHHHHcCCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCCCCcceEEEec
Q 041308 68 RLVDVGGSA-G-DCLRIILQKHCFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKSIHVVDAIFMK 131 (244)
Q Consensus 68 ~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~ 131 (244)
+|.=||+|. | .++..+.+... .+ ++++|. +...+..++.-.+.+ ..|..+.. .+|+|++.
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~-~~-v~~~~r~~~~~~~~~~~~g~~~-~~~~~~~~-~~D~vi~~ 64 (263)
T 1yqg_A 2 NVYFLGGGNMAAAVAGGLVKQGG-YR-IYIANRGAEKRERLEKELGVET-SATLPELH-SDDVLILA 64 (263)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCS-CE-EEEECSSHHHHHHHHHHTCCEE-ESSCCCCC-TTSEEEEC
T ss_pred EEEEECchHHHHHHHHHHHHCCC-Ce-EEEECCCHHHHHHHHHhcCCEE-eCCHHHHh-cCCEEEEE
Confidence 466688873 3 34455555432 35 888888 665554433223443 34443435 66988865
No 494
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=37.03 E-value=1.7e+02 Score=23.74 Aligned_cols=126 Identities=12% Similarity=0.013 Sum_probs=64.4
Q ss_pred cceEEEEcC-CccHH--HHHHHHHcCCCCeEEEeec-h--HHHHhCCCCCCeeEEeCCCCCCCC--cceEEEeccccccC
Q 041308 66 VKRLVDVGG-SAGDC--LRIILQKHCFICEGINFDL-P--EVVAKAPSIPEVTHIGGDMFKSIH--VVDAIFMKWVLTTW 137 (244)
Q Consensus 66 ~~~vLDvG~-G~G~~--~~~l~~~~p~~~~~~~~D~-~--~~i~~a~~~~~i~~~~gd~~~~~p--~~D~v~~~~~lh~~ 137 (244)
..+|.=||- |+|.. ++.+.++ +.+ +++.|. + ...+..++ ..+.+..|.-.+.+. .+|+|+.+..+.-
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~--G~~-V~~~D~~~~~~~~~~L~~-~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~- 78 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEA--GFE-VSGCDAKMYPPMSTQLEA-LGIDVYEGFDAAQLDEFKADVYVIGNVAKR- 78 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHT--TCE-EEEEESSCCTTHHHHHHH-TTCEEEESCCGGGGGSCCCSEEEECTTCCT-
T ss_pred CcEEEEEEECHHHHHHHHHHHHhC--CCE-EEEEcCCCCcHHHHHHHh-CCCEEECCCCHHHcCCCCCCEEEECCCcCC-
Confidence 357888885 67774 3334443 456 889997 3 23332222 357777663322343 4699998876632
Q ss_pred CHHHHHHHHHHHHHHcCCCCEEEEecccCCCCCCchHHhhhhhcccHhhhhhhccCceecCHHHHHHHHHhCCCCe
Q 041308 138 TDDECKLIMENYYKALLAGRKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHKTEQEFKQLGFSTGFPH 213 (244)
Q Consensus 138 ~~~~~~~~l~~~~~~L~pgG~lii~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 213 (244)
+.+ .++++++ -|.-++.+. ...... ...+....+.--++|+.-|..-+..+|+++|.+.
T Consensus 79 ~~p----~~~~a~~----~gi~v~~~~--------e~~~~~-~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~ 137 (326)
T 3eag_A 79 GMD----VVEAILN----LGLPYISGP--------QWLSEN-VLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAP 137 (326)
T ss_dssp TCH----HHHHHHH----TTCCEEEHH--------HHHHHH-TGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCCC
T ss_pred CCH----HHHHHHH----cCCcEEeHH--------HHHHHH-HhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCCc
Confidence 112 2333332 244445432 111000 0001111110123466677778889999999875
No 495
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A
Probab=36.98 E-value=53 Score=26.38 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=38.8
Q ss_pred eEEEEcCCccHHHHHHHHHc---CCCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC---CCc----ceEEEec
Q 041308 68 RLVDVGGSAGDCLRIILQKH---CFICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS---IHV----VDAIFMK 131 (244)
Q Consensus 68 ~vLDvG~G~G~~~~~l~~~~---p~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~---~p~----~D~v~~~ 131 (244)
+||=. ||+|.++.++++.. ++.+ +++++. +.-.+......+++++.+|+.++ +.. .|+|+-.
T Consensus 2 ~vlVt-GatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~ 74 (345)
T 2bll_A 2 RVLIL-GVNGFIGNHLTERLLREDHYE-VYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPL 74 (345)
T ss_dssp EEEEE-TCSSHHHHHHHHHHHHSTTCE-EEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred eEEEE-CCCcHHHHHHHHHHHHhCCCE-EEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEc
Confidence 34544 56777777777654 3456 888887 44333333346899999999763 221 3877744
No 496
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=36.76 E-value=18 Score=29.68 Aligned_cols=88 Identities=8% Similarity=0.024 Sum_probs=49.8
Q ss_pred ceEEEEcCCc--cHHHHHHHHHc--CCCCeEEEeec-hH--HHHhCCCCCCeeEEeCCCCCCCCcceEEEeccccccCCH
Q 041308 67 KRLVDVGGSA--GDCLRIILQKH--CFICEGINFDL-PE--VVAKAPSIPEVTHIGGDMFKSIHVVDAIFMKWVLTTWTD 139 (244)
Q Consensus 67 ~~vLDvG~G~--G~~~~~l~~~~--p~~~~~~~~D~-~~--~i~~a~~~~~i~~~~gd~~~~~p~~D~v~~~~~lh~~~~ 139 (244)
.+|.=||+|. +.++..|.+.. +..+ +++.|. +. .++..++ ..+.+. .|..+....+|+|++.- ++
T Consensus 23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~-V~v~~r~~~~~~~~~l~~-~G~~~~-~~~~e~~~~aDvVilav-----~~ 94 (322)
T 2izz_A 23 MSVGFIGAGQLAFALAKGFTAAGVLAAHK-IMASSPDMDLATVSALRK-MGVKLT-PHNKETVQHSDVLFLAV-----KP 94 (322)
T ss_dssp CCEEEESCSHHHHHHHHHHHHTTSSCGGG-EEEECSCTTSHHHHHHHH-HTCEEE-SCHHHHHHHCSEEEECS-----CG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCcce-EEEECCCccHHHHHHHHH-cCCEEe-CChHHHhccCCEEEEEe-----CH
Confidence 4688899873 33455565543 1135 888887 43 3433332 123332 22111122359888763 45
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEe
Q 041308 140 DECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 140 ~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
.....+++++...++||..++.+
T Consensus 95 ~~~~~vl~~l~~~l~~~~ivvs~ 117 (322)
T 2izz_A 95 HIIPFILDEIGADIEDRHIVVSC 117 (322)
T ss_dssp GGHHHHHHHHGGGCCTTCEEEEC
T ss_pred HHHHHHHHHHHhhcCCCCEEEEe
Confidence 55677888888888887755543
No 497
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=36.45 E-value=49 Score=26.90 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=50.4
Q ss_pred CcceEEEEcCCc-c-HHHHHHHHHcCCCCeEEEeec-hHHHHhCCCC------CCeeEE-----eCCCCCCCCcceEEEe
Q 041308 65 GVKRLVDVGGSA-G-DCLRIILQKHCFICEGINFDL-PEVVAKAPSI------PEVTHI-----GGDMFKSIHVVDAIFM 130 (244)
Q Consensus 65 ~~~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~~D~-~~~i~~a~~~------~~i~~~-----~gd~~~~~p~~D~v~~ 130 (244)
...+|.=||+|. | .++..|++... + ++.+ . ++.++..++. +...+. ..|. +....+|+|++
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~--~-V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil 92 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGH--E-VILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLVLF 92 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTC--E-EEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEEEE
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCC--e-EEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEEEE
Confidence 347899999883 3 34555555443 4 6666 4 5555544331 111110 1111 11233598887
Q ss_pred ccccccCCHHHHHHHHHHHHHHcCCCCEEEEeccc
Q 041308 131 KWVLTTWTDDECKLIMENYYKALLAGRKLIACEPV 165 (244)
Q Consensus 131 ~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~~ 165 (244)
.- +..+...+++.+...++|+..++.....
T Consensus 93 av-----k~~~~~~~l~~l~~~l~~~~~iv~~~nG 122 (318)
T 3hwr_A 93 CV-----KSTDTQSAALAMKPALAKSALVLSLQNG 122 (318)
T ss_dssp CC-----CGGGHHHHHHHHTTTSCTTCEEEEECSS
T ss_pred Ec-----ccccHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 63 3334567888898899998877765443
No 498
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=36.43 E-value=80 Score=27.86 Aligned_cols=86 Identities=10% Similarity=0.018 Sum_probs=54.2
Q ss_pred cceEEEEcCCccHHHHHHHHHcC--CCCeEEEeec-hHHHHhCCCCCCeeEEeCCCCCC--CC-----cceEEEeccccc
Q 041308 66 VKRLVDVGGSAGDCLRIILQKHC--FICEGINFDL-PEVVAKAPSIPEVTHIGGDMFKS--IH-----VVDAIFMKWVLT 135 (244)
Q Consensus 66 ~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~~D~-~~~i~~a~~~~~i~~~~gd~~~~--~p-----~~D~v~~~~~lh 135 (244)
..+++=+|+| ..+..+++... +.. ++++|. ++.++.+++...+.++.||..++ +. .+|.++. .
T Consensus 127 ~~hviI~G~g--~~g~~la~~L~~~~~~-vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~--t-- 199 (565)
T 4gx0_A 127 RGHILIFGID--PITRTLIRKLESRNHL-FVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA--N-- 199 (565)
T ss_dssp CSCEEEESCC--HHHHHHHHHTTTTTCC-EEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE--C--
T ss_pred CCeEEEECCC--hHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE--e--
Confidence 4688888875 56666666543 346 899998 88877776543789999999775 22 2577775 2
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEE
Q 041308 136 TWTDDECKLIMENYYKALLAGRKLIA 161 (244)
Q Consensus 136 ~~~~~~~~~~l~~~~~~L~pgG~lii 161 (244)
.+|+....+.. ..+.+. ..+++.
T Consensus 200 -~~D~~n~~~~~-~ar~~~-~~~iia 222 (565)
T 4gx0_A 200 -LSDPDNANLCL-TVRSLC-QTPIIA 222 (565)
T ss_dssp -SCHHHHHHHHH-HHHTTC-CCCEEE
T ss_pred -CCcHHHHHHHH-HHHHhc-CceEEE
Confidence 24444333333 455666 545443
No 499
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=36.43 E-value=13 Score=29.98 Aligned_cols=90 Identities=8% Similarity=-0.042 Sum_probs=48.0
Q ss_pred ceEEEEcCCc-c-HHHHHHHHHc--C-C-CCeEEEeechHHHHhCCCCCCeeEEe--CC-----C--CCC---CCcceEE
Q 041308 67 KRLVDVGGSA-G-DCLRIILQKH--C-F-ICEGINFDLPEVVAKAPSIPEVTHIG--GD-----M--FKS---IHVVDAI 128 (244)
Q Consensus 67 ~~vLDvG~G~-G-~~~~~l~~~~--p-~-~~~~~~~D~~~~i~~a~~~~~i~~~~--gd-----~--~~~---~p~~D~v 128 (244)
.+|.=||+|. | .++..|++.. + + .+ ++++|.+..++..++...+.+.. ++ . .++ ...+|+|
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~-V~~~~r~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 87 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLE-VSWIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI 87 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEE-EEEECCHHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCC-EEEEEcHHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence 4788999983 3 3455566550 1 2 35 88888754444333201233221 10 0 011 1234888
Q ss_pred EeccccccCCHHHHHHHHHHHHHHcCCCCEEEEe
Q 041308 129 FMKWVLTTWTDDECKLIMENYYKALLAGRKLIAC 162 (244)
Q Consensus 129 ~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~ 162 (244)
++.---+. ...+++.+...++|+..++.+
T Consensus 88 il~vk~~~-----~~~v~~~i~~~l~~~~~iv~~ 116 (317)
T 2qyt_A 88 LFCTKDYD-----MERGVAEIRPMIGQNTKILPL 116 (317)
T ss_dssp EECCSSSC-----HHHHHHHHGGGEEEEEEEEEC
T ss_pred EEecCccc-----HHHHHHHHHhhcCCCCEEEEc
Confidence 87643332 356778888888887666654
No 500
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*
Probab=36.25 E-value=20 Score=29.49 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=50.1
Q ss_pred ceEEEEcCCc--cHHHHHHHHHcC-----CCCeEEEeec-hH-----HHHhCCC---C----------CCeeEEeCCCCC
Q 041308 67 KRLVDVGGSA--GDCLRIILQKHC-----FICEGINFDL-PE-----VVAKAPS---I----------PEVTHIGGDMFK 120 (244)
Q Consensus 67 ~~vLDvG~G~--G~~~~~l~~~~p-----~~~~~~~~D~-~~-----~i~~a~~---~----------~~i~~~~gd~~~ 120 (244)
.+|.=||+|. +.++..+++... ..+ ++++|. +. ..+..++ . .++.+ ..|..+
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 86 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPR-VTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-VPDVVQ 86 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEE-EEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE-ESSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCe-EEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE-EcCHHH
Confidence 4788999884 334555665540 034 788887 54 3332211 0 12222 112111
Q ss_pred CCCcceEEEeccccccCCHHHHHHHHHHHHHHcCCCCEEEEecc
Q 041308 121 SIHVVDAIFMKWVLTTWTDDECKLIMENYYKALLAGRKLIACEP 164 (244)
Q Consensus 121 ~~p~~D~v~~~~~lh~~~~~~~~~~l~~~~~~L~pgG~lii~d~ 164 (244)
....+|+|++. .++.....+++++...++|+..++.+-.
T Consensus 87 ~~~~aD~Vila-----v~~~~~~~v~~~i~~~l~~~~ivv~~~~ 125 (354)
T 1x0v_A 87 AAEDADILIFV-----VPHQFIGKICDQLKGHLKANATGISLIK 125 (354)
T ss_dssp HHTTCSEEEEC-----CCGGGHHHHHHHHTTCSCTTCEEEECCC
T ss_pred HHcCCCEEEEe-----CCHHHHHHHHHHHHhhCCCCCEEEEECC
Confidence 12335988876 3444566788888888888876665543
Done!