Query 041310
Match_columns 254
No_of_seqs 143 out of 1434
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:53:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 3E-26 6.6E-31 207.5 23.7 225 3-235 11-242 (358)
2 PRK11272 putative DMT superfam 99.9 1.7E-21 3.8E-26 172.2 23.4 191 7-235 10-201 (292)
3 PRK11453 O-acetylserine/cystei 99.9 1.7E-21 3.8E-26 172.7 19.8 192 5-235 4-198 (299)
4 TIGR00950 2A78 Carboxylate/Ami 99.9 1.4E-20 3E-25 162.8 20.7 181 17-235 1-182 (260)
5 PRK11689 aromatic amino acid e 99.9 1.7E-20 3.6E-25 166.2 20.5 179 2-209 1-183 (295)
6 TIGR00688 rarD rarD protein. T 99.9 9.4E-20 2E-24 158.0 20.8 163 5-206 2-170 (256)
7 PRK15430 putative chlorampheni 99.9 6.3E-20 1.4E-24 162.6 19.1 186 2-226 5-194 (296)
8 TIGR00817 tpt Tpt phosphate/ph 99.8 4.5E-18 9.8E-23 150.9 24.3 179 22-235 19-199 (302)
9 PRK10532 threonine and homoser 99.8 6.6E-18 1.4E-22 149.4 22.5 189 3-234 10-198 (293)
10 PTZ00343 triose or hexose phos 99.7 4.5E-16 9.8E-21 141.1 23.3 182 19-235 63-253 (350)
11 TIGR03340 phn_DUF6 phosphonate 99.7 7.3E-16 1.6E-20 135.5 19.4 168 7-209 3-171 (281)
12 PF00892 EamA: EamA-like trans 99.7 8.1E-16 1.7E-20 117.7 10.4 125 15-147 1-125 (126)
13 PF06027 DUF914: Eukaryotic pr 99.6 4.1E-14 8.8E-19 126.6 20.4 200 12-236 20-221 (334)
14 COG0697 RhaT Permeases of the 99.6 1.2E-13 2.7E-18 120.1 22.7 183 4-220 6-191 (292)
15 COG2510 Predicted membrane pro 99.6 2.3E-14 5.1E-19 109.0 10.3 134 6-147 4-138 (140)
16 TIGR00776 RhaT RhaT L-rhamnose 99.5 3.1E-12 6.7E-17 113.2 18.0 181 6-220 2-187 (290)
17 TIGR00950 2A78 Carboxylate/Ami 99.5 2.5E-12 5.4E-17 111.2 15.6 131 4-143 127-259 (260)
18 COG5006 rhtA Threonine/homoser 99.4 1.9E-11 4.2E-16 103.4 18.1 186 6-233 13-198 (292)
19 COG2962 RarD Predicted permeas 99.4 1.7E-10 3.8E-15 99.7 19.8 192 4-237 6-200 (293)
20 KOG4510 Permease of the drug/m 99.3 5.3E-13 1.2E-17 113.6 1.7 199 6-230 39-238 (346)
21 PRK10532 threonine and homoser 99.3 1.5E-10 3.3E-15 102.4 16.7 135 5-149 148-282 (293)
22 PF13536 EmrE: Multidrug resis 99.3 1.7E-11 3.6E-16 93.5 8.3 103 39-148 2-106 (113)
23 PRK11272 putative DMT superfam 99.3 2.1E-10 4.5E-15 101.4 16.3 136 4-147 149-284 (292)
24 PRK11689 aromatic amino acid e 99.2 8E-10 1.7E-14 97.9 15.5 132 5-148 156-287 (295)
25 PLN00411 nodulin MtN21 family 99.2 2E-09 4.3E-14 97.9 16.6 136 6-150 190-330 (358)
26 PRK11453 O-acetylserine/cystei 99.1 5.1E-09 1.1E-13 92.9 16.8 137 5-147 143-286 (299)
27 PF08449 UAA: UAA transporter 99.1 2.7E-08 5.7E-13 88.5 20.9 185 22-232 17-205 (303)
28 TIGR03340 phn_DUF6 phosphonate 99.0 2.2E-09 4.7E-14 94.4 11.1 134 4-145 143-280 (281)
29 KOG2765 Predicted membrane pro 99.0 4.8E-09 1E-13 93.4 11.8 104 81-208 170-273 (416)
30 TIGR00817 tpt Tpt phosphate/ph 98.9 8.6E-09 1.9E-13 91.4 11.6 139 4-148 144-293 (302)
31 PF04142 Nuc_sug_transp: Nucle 98.9 1.3E-07 2.9E-12 81.6 15.5 152 65-232 13-165 (244)
32 PRK15430 putative chlorampheni 98.8 2E-07 4.3E-12 82.6 14.9 132 8-147 152-284 (296)
33 COG0697 RhaT Permeases of the 98.8 3.6E-07 7.8E-12 79.3 16.1 133 4-147 153-286 (292)
34 PTZ00343 triose or hexose phos 98.7 5.4E-07 1.2E-11 81.8 15.8 137 4-147 193-347 (350)
35 PF03151 TPT: Triose-phosphate 98.7 8.7E-07 1.9E-11 70.4 14.9 133 6-145 1-150 (153)
36 TIGR00776 RhaT RhaT L-rhamnose 98.7 3.5E-07 7.6E-12 80.9 13.5 129 4-147 151-287 (290)
37 PRK15051 4-amino-4-deoxy-L-ara 98.6 1.1E-06 2.4E-11 66.8 12.5 69 73-147 40-108 (111)
38 COG5006 rhtA Threonine/homoser 98.6 7.6E-07 1.6E-11 75.8 12.2 131 5-144 148-278 (292)
39 PRK02971 4-amino-4-deoxy-L-ara 98.5 4.8E-06 1E-10 64.9 12.6 118 5-147 2-121 (129)
40 KOG2234 Predicted UDP-galactos 98.4 0.00023 5E-09 63.7 22.4 205 6-233 16-235 (345)
41 KOG1441 Glucose-6-phosphate/ph 98.4 3.7E-06 8E-11 74.9 10.9 181 23-237 35-222 (316)
42 KOG2766 Predicted membrane pro 98.3 3.1E-08 6.7E-13 84.3 -3.4 190 13-235 27-217 (336)
43 PF06027 DUF914: Eukaryotic pr 98.2 3.2E-05 6.9E-10 69.6 13.9 138 3-148 166-305 (334)
44 KOG3912 Predicted integral mem 98.0 0.0004 8.7E-09 60.3 14.7 132 76-230 93-225 (372)
45 KOG4314 Predicted carbohydrate 97.9 6.2E-05 1.3E-09 62.2 8.0 97 81-207 64-160 (290)
46 PRK13499 rhamnose-proton sympo 97.8 0.0016 3.5E-08 58.9 16.7 178 3-198 5-190 (345)
47 KOG1444 Nucleotide-sugar trans 97.7 0.0046 1E-07 54.7 17.7 191 11-235 14-211 (314)
48 KOG1443 Predicted integral mem 97.7 0.0006 1.3E-08 59.9 12.0 182 20-236 32-222 (349)
49 TIGR00688 rarD rarD protein. T 97.7 0.001 2.2E-08 57.4 13.0 106 8-117 149-255 (256)
50 PF08449 UAA: UAA transporter 97.7 0.0017 3.7E-08 57.7 14.4 135 6-147 155-296 (303)
51 PF06800 Sugar_transport: Suga 97.6 0.0061 1.3E-07 53.2 16.7 117 66-203 42-159 (269)
52 COG2962 RarD Predicted permeas 97.5 0.0057 1.2E-07 53.5 14.8 127 11-147 154-282 (293)
53 PF06800 Sugar_transport: Suga 97.3 0.0025 5.5E-08 55.6 10.3 114 4-125 137-250 (269)
54 PRK10650 multidrug efflux syst 97.3 0.0061 1.3E-07 46.0 10.9 61 80-146 45-106 (109)
55 PF10639 UPF0546: Uncharacteri 97.2 0.00072 1.6E-08 51.3 5.5 110 11-146 2-112 (113)
56 PRK10452 multidrug efflux syst 97.1 0.0023 5E-08 49.2 7.4 65 77-147 37-102 (120)
57 PRK09541 emrE multidrug efflux 97.1 0.0034 7.3E-08 47.5 7.9 65 77-147 37-102 (110)
58 COG2076 EmrE Membrane transpor 97.0 0.004 8.6E-08 46.6 7.4 63 79-147 39-102 (106)
59 KOG1442 GDP-fucose transporter 97.0 0.0045 9.8E-08 53.8 8.6 172 34-235 61-239 (347)
60 PF04657 DUF606: Protein of un 96.9 0.032 7E-07 43.9 12.0 127 10-145 6-138 (138)
61 PRK11431 multidrug efflux syst 96.8 0.0078 1.7E-07 45.2 7.9 64 78-147 37-101 (105)
62 KOG1580 UDP-galactose transpor 96.7 0.013 2.8E-07 50.0 9.0 135 72-232 88-223 (337)
63 KOG2765 Predicted membrane pro 96.7 0.019 4.1E-07 52.0 10.2 140 4-149 246-391 (416)
64 KOG1441 Glucose-6-phosphate/ph 96.7 0.0076 1.6E-07 53.9 7.7 137 3-147 161-306 (316)
65 KOG4510 Permease of the drug/m 96.6 0.0013 2.9E-08 56.9 2.5 134 5-147 191-324 (346)
66 PF05653 Mg_trans_NIPA: Magnes 96.6 0.017 3.7E-07 51.4 9.7 115 5-148 7-122 (300)
67 KOG1581 UDP-galactose transpor 96.5 0.23 4.9E-06 44.0 15.7 170 33-231 50-222 (327)
68 PF00893 Multi_Drug_Res: Small 96.5 0.0081 1.8E-07 44.0 5.8 54 79-138 38-92 (93)
69 COG4975 GlcU Putative glucose 96.3 0.00039 8.4E-09 59.3 -2.4 172 5-204 2-174 (288)
70 PRK13499 rhamnose-proton sympo 95.6 0.71 1.5E-05 41.9 15.1 142 4-147 173-340 (345)
71 TIGR00803 nst UDP-galactose tr 95.2 0.1 2.2E-06 44.0 8.0 58 81-144 163-220 (222)
72 COG3238 Uncharacterized protei 94.8 0.92 2E-05 36.2 11.6 140 3-146 3-144 (150)
73 KOG1581 UDP-galactose transpor 94.6 0.55 1.2E-05 41.6 10.8 137 4-148 171-313 (327)
74 COG5070 VRG4 Nucleotide-sugar 94.6 0.49 1.1E-05 40.3 10.1 124 87-236 85-210 (309)
75 KOG1580 UDP-galactose transpor 94.2 0.47 1E-05 40.7 9.2 134 6-147 173-312 (337)
76 KOG1583 UDP-N-acetylglucosamin 94.1 0.058 1.3E-06 47.1 3.7 179 35-235 34-214 (330)
77 PF07857 DUF1632: CEO family ( 93.0 2.8 6.1E-05 36.4 12.3 222 6-238 1-250 (254)
78 PF03151 TPT: Triose-phosphate 92.2 0.55 1.2E-05 36.7 6.5 54 183-236 1-60 (153)
79 KOG2922 Uncharacterized conser 91.1 0.08 1.7E-06 47.1 0.6 116 4-147 20-135 (335)
80 KOG1444 Nucleotide-sugar trans 90.4 3.5 7.6E-05 36.8 10.2 137 4-147 156-299 (314)
81 PF00892 EamA: EamA-like trans 88.0 0.44 9.5E-06 35.4 2.5 42 192-235 1-42 (126)
82 COG5070 VRG4 Nucleotide-sugar 87.0 5.2 0.00011 34.2 8.5 109 32-147 183-295 (309)
83 KOG1443 Predicted integral mem 86.9 16 0.00036 32.6 11.8 136 4-146 163-313 (349)
84 KOG1582 UDP-galactose transpor 83.5 8.5 0.00019 33.9 8.4 191 16-241 54-250 (367)
85 PF04142 Nuc_sug_transp: Nucle 83.3 29 0.00062 29.9 12.6 121 5-125 114-236 (244)
86 PF06379 RhaT: L-rhamnose-prot 81.4 42 0.00091 30.5 14.2 180 4-201 6-192 (344)
87 COG2510 Predicted membrane pro 79.4 11 0.00023 29.4 6.8 51 184-235 5-55 (140)
88 TIGR00803 nst UDP-galactose tr 78.4 28 0.0006 29.0 10.0 105 97-208 5-111 (222)
89 COG4975 GlcU Putative glucose 78.3 1.9 4.2E-05 37.2 2.7 78 67-147 207-284 (288)
90 KOG1582 UDP-galactose transpor 76.9 23 0.0005 31.3 8.9 113 29-148 215-332 (367)
91 KOG3912 Predicted integral mem 75.3 43 0.00093 29.8 10.2 137 4-146 175-332 (372)
92 KOG4831 Unnamed protein [Funct 74.7 34 0.00073 25.7 8.6 116 8-147 6-124 (125)
93 PF04657 DUF606: Protein of un 68.9 28 0.00061 27.1 7.1 52 184-235 3-54 (138)
94 COG4657 RnfA Predicted NADH:ub 68.2 56 0.0012 26.5 8.5 55 178-232 128-187 (193)
95 KOG2766 Predicted membrane pro 67.1 7.9 0.00017 33.8 3.8 133 4-147 165-298 (336)
96 PRK02237 hypothetical protein; 65.8 9.3 0.0002 28.7 3.5 40 103-148 66-105 (109)
97 COG3238 Uncharacterized protei 61.2 54 0.0012 26.2 7.4 55 181-235 4-58 (150)
98 PF02694 UPF0060: Uncharacteri 60.5 9.6 0.00021 28.5 2.8 40 103-148 64-103 (107)
99 PRK10862 SoxR reducing system 42.3 33 0.00071 27.4 3.4 29 90-118 68-96 (154)
100 COG1742 Uncharacterized conser 41.1 19 0.0004 26.9 1.7 37 106-148 68-104 (109)
101 PF04246 RseC_MucC: Positive r 38.0 29 0.00064 26.7 2.5 46 92-144 63-108 (135)
102 PRK15462 dipeptide/tripeptide 36.7 3.5E+02 0.0076 25.8 10.0 49 99-147 310-361 (493)
103 KOG1442 GDP-fucose transporter 35.9 69 0.0015 28.4 4.6 138 4-148 184-327 (347)
104 COG3086 RseC Positive regulato 33.3 70 0.0015 25.4 3.8 28 90-117 68-95 (150)
105 KOG1583 UDP-N-acetylglucosamin 29.8 4.1E+02 0.0089 23.8 9.5 134 6-147 165-313 (330)
106 PF05653 Mg_trans_NIPA: Magnes 27.8 93 0.002 27.6 4.3 30 179-208 4-33 (300)
107 PF07168 Ureide_permease: Urei 27.6 43 0.00094 30.0 2.0 129 10-145 1-143 (336)
108 CHL00196 psbY photosystem II p 27.1 1.4E+02 0.0031 17.7 3.6 19 183-201 7-25 (36)
109 PF04342 DUF486: Protein of un 25.1 3E+02 0.0065 20.6 7.7 29 111-145 77-105 (108)
110 PRK13240 pbsY photosystem II p 23.4 1.1E+02 0.0023 18.7 2.6 18 184-201 8-25 (40)
111 PF06298 PsbY: Photosystem II 20.2 2.1E+02 0.0045 17.0 3.6 18 184-201 8-25 (36)
112 TIGR01647 ATPase-IIIA_H plasma 20.2 6.5E+02 0.014 25.5 9.0 80 67-146 662-752 (755)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.95 E-value=3e-26 Score=207.50 Aligned_cols=225 Identities=28% Similarity=0.447 Sum_probs=176.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHHHHH
Q 041310 3 AYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLER-KHRPKLSFAVMAKIFVLALFGAT 81 (254)
Q Consensus 3 ~~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~ 81 (254)
+.++++.|+...+.++...++.|.+++.|++|..+.++|+.+|+++++++...++| +++++.+++++..+.+.|+++ .
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~ 89 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-S 89 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-H
Confidence 46789999999999999999999999999999999999999999999998776544 233445678889999999998 6
Q ss_pred HHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHH------ccccccccccCCCchhHHHHHHHHhHHHHhhhcccccc
Q 041310 82 IHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLL------GMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLL 155 (254)
Q Consensus 82 l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~------~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~ 155 (254)
+++.+++.|++|+++++++++.+++|+++.++++++ ++||++++ +++|++++++|+.++...+++...
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~~ 163 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRVF 163 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCcccc
Confidence 788899999999999999999999999999999999 47777776 999999999999988754432110
Q ss_pred cCccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310 156 KGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR 235 (254)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (254)
..-++...+++....+ ...+..+...|++++++|+++||+|++++|+..+++|+....++|++.++++...+.++..++
T Consensus 164 ~~~~~~~~~~~~~~~~-~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~ 242 (358)
T PLN00411 164 VASSPPYLNFRQLSPP-LSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK 242 (358)
T ss_pred cccccccccccccccc-cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0000000000000000 001123346799999999999999999999999998765677889999888888777777664
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.90 E-value=1.7e-21 Score=172.16 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041310 7 YVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNV 86 (254)
Q Consensus 7 ~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l 86 (254)
.+.++...++||++++++|...++ +||..++++|+.+++++++++...++++ ..+++++......|.++...++.+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~ 85 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGLLLLAVGNGM 85 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998886 9999999999999999988876543222 235678888888888876677888
Q ss_pred HHHhh-hccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCcccc
Q 041310 87 YYTGF-SYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIH 165 (254)
Q Consensus 87 ~~~~l-~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~ 165 (254)
++.+. +++++++++++.++.|+++++++++ +|||++++ +++|++++++|+.++...+
T Consensus 86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~~--------------- 143 (292)
T PRK11272 86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSGG--------------- 143 (292)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcCc---------------
Confidence 99999 9999999999999999999999985 69999998 9999999999998875110
Q ss_pred ccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310 166 IYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR 235 (254)
Q Consensus 166 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (254)
+.+....|++++++++++||.|.+..||..++. +...+.+++.+++..+.+.....+.
T Consensus 144 ----------~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (292)
T PRK11272 144 ----------NLSGNPWGAILILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGE 201 (292)
T ss_pred ----------ccccchHHHHHHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCC
Confidence 011235699999999999999999999876543 3566789999998888888765544
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.89 E-value=1.7e-21 Score=172.71 Aligned_cols=192 Identities=18% Similarity=0.233 Sum_probs=145.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310 5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL 84 (254)
Q Consensus 5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~ 84 (254)
+..+..++++++||++++++|...++ +||..++++|+.++++.++++. .++ +.+++ .....|++....++
T Consensus 4 ~~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~---~~~---~~~~~---~~~~~g~~~~~~~~ 73 (299)
T PRK11453 4 KDGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV---ARP---KVPLN---LLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh---cCC---CCchH---HHHHHHHHHHHHHH
Confidence 34467889999999999999999887 9999999999999887665543 111 12222 23344555444566
Q ss_pred HHHHHhhhc-cchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCcc
Q 041310 85 NVYYTGFSY-VSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPL 163 (254)
Q Consensus 85 ~l~~~~l~~-~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~ 163 (254)
.+++.++++ .++++++++.+++|+++.+++++++|||++++ +++|++++++|+.++.. ++.
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~----------- 135 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSL----------- 135 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccC-----------
Confidence 678889998 58899999999999999999999999999998 99999999999998861 100
Q ss_pred ccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc--chHHHHHHHHHHHHHHHHHHHhcC
Q 041310 164 IHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAP--LSLNALICFFASLQSSFVALFLGR 235 (254)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 235 (254)
.+.+....|++++++++++|++|++++||..++.+++ ...+.+++..+.+.....+...|+
T Consensus 136 -----------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (299)
T PRK11453 136 -----------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDG 198 (299)
T ss_pred -----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0112235799999999999999999999987665432 344567777766655555555544
No 4
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.87 E-value=1.4e-20 Score=162.84 Aligned_cols=181 Identities=20% Similarity=0.286 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 041310 17 YGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSL 96 (254)
Q Consensus 17 wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~ 96 (254)
||.+++.+|...+++.|+....+.|+..+.+.+.++... + .+++++......|.++..+++.+++.|++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 899999999998877999999999999998887776432 2 234566777788888778999999999999999
Q ss_pred hhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCCC
Q 041310 97 TVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHG 176 (254)
Q Consensus 97 ~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (254)
++++++.++.|+++.+++++++|||++++ +++|++++++|+.++. .++ +
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~-~~~------------------------~ 122 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLL-SDG------------------------N 122 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhc-cCC------------------------c
Confidence 99999999999999999999999999998 9999999999999876 211 0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-cchHHHHHHHHHHHHHHHHHHHhcC
Q 041310 177 NENWFKGSALILTSHISWSAWLILLATVSKDYPA-PLSLNALICFFASLQSSFVALFLGR 235 (254)
Q Consensus 177 ~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (254)
.+....|+.++++++++|+.+.+..|+..++.+. +...+.+++.++.+...+.....++
T Consensus 123 ~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (260)
T TIGR00950 123 LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGP 182 (260)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1234679999999999999999999998877652 2355667899999988888876554
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.87 E-value=1.7e-20 Score=166.18 Aligned_cols=179 Identities=11% Similarity=0.011 Sum_probs=135.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 041310 2 EAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGAT 81 (254)
Q Consensus 2 ~~~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 81 (254)
+|.+++++++.++++||++++.+|...++ +||..+.+.|+.+++++++++. +++ +.+++++. ....+.++..
T Consensus 1 ~~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~~---~~~~~~~~-~~~~~~l~~~ 72 (295)
T PRK11689 1 TSQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GFP---RLRQFPKR-YLLAGGLLFV 72 (295)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---ccc---ccccccHH-HHHHHhHHHH
Confidence 46788999999999999999999999887 9999999999999998887653 111 11111122 2334444456
Q ss_pred HHHHHHHHhhhc----cchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccC
Q 041310 82 IHLNVYYTGFSY----VSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKG 157 (254)
Q Consensus 82 l~~~l~~~~l~~----~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~ 157 (254)
.++.+++.++++ +++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++... ++..+.
T Consensus 73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~- 144 (295)
T PRK11689 73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL- 144 (295)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh-
Confidence 777778888765 57788899999999999999999999999998 999999999999988721 110000
Q ss_pred ccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 041310 158 FVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYP 209 (254)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~ 209 (254)
. +..++..+...|++++++|+++||.|+++.||..++++
T Consensus 145 --------~-----~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~ 183 (295)
T PRK11689 145 --------A-----ELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN 183 (295)
T ss_pred --------h-----hhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 0 00001112346999999999999999999999877664
No 6
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.85 E-value=9.4e-20 Score=157.96 Aligned_cols=163 Identities=12% Similarity=0.110 Sum_probs=131.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHH-HHHHHHHHHHH
Q 041310 5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH-----RPKLSFA-VMAKIFVLALF 78 (254)
Q Consensus 5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~-~~~~~~~~g~~ 78 (254)
|++.+++.++++||.+++++|. .++ +||.+++++|+.+++++++++...+++++ .++.+++ ++......|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 6889999999999999999998 455 99999999999999988777654432211 1112222 34456667776
Q ss_pred HHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCc
Q 041310 79 GATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGF 158 (254)
Q Consensus 79 ~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~ 158 (254)
. ..++.+++++++++++++++++.++.|+++++++++++|||++++ ++++++++++|+.++...+
T Consensus 80 ~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~-------- 144 (256)
T TIGR00688 80 I-GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLK-------- 144 (256)
T ss_pred H-HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHc--------
Confidence 4 688999999999999999999999999999999999999999998 9999999999999876210
Q ss_pred cCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041310 159 VQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSK 206 (254)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~ 206 (254)
++.. .++++++++||.|.+..|+..+
T Consensus 145 -----------------~~~~-----~~~l~aa~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 145 -----------------GSLP-----WEALVLAFSFTAYGLIRKALKN 170 (256)
T ss_pred -----------------CCch-----HHHHHHHHHHHHHHHHHhhcCC
Confidence 0111 3568899999999999988754
No 7
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.85 E-value=6.3e-20 Score=162.55 Aligned_cols=186 Identities=10% Similarity=0.061 Sum_probs=140.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--C-CCCHHHHHHHHHHHHH
Q 041310 2 EAYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHR--P-KLSFAVMAKIFVLALF 78 (254)
Q Consensus 2 ~~~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~~ 78 (254)
++.|+.+++++++++||.+++.+|.. ++ +||.++.++|+.++.+++.++...+++++. + ..+++++.. ...+.+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM-LAVSAV 81 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH-HHHHHH
Confidence 45689999999999999999999985 44 999999999999999877776544321110 0 113344433 335555
Q ss_pred HHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCc
Q 041310 79 GATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGF 158 (254)
Q Consensus 79 ~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~ 158 (254)
+...++.++++|++++++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++....
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~-------- 147 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTF-------- 147 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHc--------
Confidence 56788999999999999999999999999999999999999999998 9999999999999886111
Q ss_pred cCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-CcchHHHHHHHHHHHHH
Q 041310 159 VQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYP-APLSLNALICFFASLQS 226 (254)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 226 (254)
++. ..+.++++++||.|++..||..++.. .....+.+++.++....
T Consensus 148 -----------------~~~-----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (296)
T PRK15430 148 -----------------GSL-----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYL 194 (296)
T ss_pred -----------------CCc-----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 011 14578899999999999988643221 12334556665555443
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.82 E-value=4.5e-18 Score=150.91 Aligned_cols=179 Identities=16% Similarity=0.080 Sum_probs=148.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhh
Q 041310 22 ILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATA 101 (254)
Q Consensus 22 v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~ 101 (254)
+.-|.++++--+|..+++.|+.++.+.+.+.. ..+.+++++.+++++++.+..|+++ ..++.+.+.+++|++++++++
T Consensus 19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~l 96 (302)
T TIGR00817 19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSW-SSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTHT 96 (302)
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHH
Confidence 46788887535699999999999887665542 1122223456789999999999996 788899999999999999999
Q ss_pred hcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCCCCCchH
Q 041310 102 LSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWF 181 (254)
Q Consensus 102 l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (254)
+.++.|+++++++++++|||++++ ++.|++++++|+.+.. .+ +.+...
T Consensus 97 i~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~-~~-------------------------~~~~~~ 144 (302)
T TIGR00817 97 IKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS-DT-------------------------ELSFNW 144 (302)
T ss_pred HHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc-CC-------------------------cccccH
Confidence 999999999999999999999998 9999999999998654 10 011235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hCCCcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310 182 KGSALILTSHISWSAWLILLATVSK--DYPAPLSLNALICFFASLQSSFVALFLGR 235 (254)
Q Consensus 182 ~G~~l~l~aa~~~A~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (254)
.|++++++|+++|++|.++.||..+ +++ +...+.+++..+++.+.|.....|+
T Consensus 145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~ 199 (302)
T TIGR00817 145 AGFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEG 199 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcc
Confidence 6999999999999999999999887 665 5889999999999999999887664
No 9
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.81 E-value=6.6e-18 Score=149.41 Aligned_cols=189 Identities=13% Similarity=0.127 Sum_probs=148.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 041310 3 AYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATI 82 (254)
Q Consensus 3 ~~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l 82 (254)
+.+++.++++++++|+.+++++|.+.++ +||..++++|+.+++++++++... ++ ++.+++++......|++. ..
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~-~~---~~~~~~~~~~~~~~g~~~-~~ 83 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP-WR---LRFAKEQRLPLLFYGVSL-GG 83 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH-Hh---ccCCHHHHHHHHHHHHHH-HH
Confidence 4578999999999999999999999988 999999999999999888776422 11 134567888788888875 67
Q ss_pred HHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCc
Q 041310 83 HLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKP 162 (254)
Q Consensus 83 ~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~ 162 (254)
.+.+++++++++++++++++.++.|+++.+++ +|++. +..++.++++|+.++. ..+.
T Consensus 84 ~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~-~~~~---------- 140 (293)
T PRK10532 84 MNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLL-PLGQ---------- 140 (293)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheee-ecCC----------
Confidence 78899999999999999999999999998876 35443 3456788899998876 1110
Q ss_pred cccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhc
Q 041310 163 LIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLG 234 (254)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (254)
+.+.....|+++.++++++||.|++..||..++++ +... .++..++++.+.|+....+
T Consensus 141 ------------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~ 198 (293)
T PRK10532 141 ------------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQA 198 (293)
T ss_pred ------------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHcc
Confidence 01122357999999999999999999999987765 3554 5667777777777776544
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.75 E-value=4.5e-16 Score=141.06 Aligned_cols=182 Identities=14% Similarity=0.101 Sum_probs=143.8
Q ss_pred HHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 041310 19 GSNILVKISLEKGLN-HLVFVVYRHVLAMVLLGPFAYVLERKHRPKL--SFAVMAKIFVLALFGATIHLNVYYTGFSYVS 95 (254)
Q Consensus 19 ~~~v~~K~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~ 95 (254)
...+..|.+++. +| |..+..+|+.++.+.+.++... +.+++|+. .+++++..+.+|+++... +...+.++++++
T Consensus 63 ~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~s 139 (350)
T PTZ00343 63 LYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLCHLFV-HFGAVISMGLGA 139 (350)
T ss_pred HHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence 445678999987 99 9999999999998765554322 22222333 245788899999998654 455679999999
Q ss_pred hhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCC
Q 041310 96 LTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHH 175 (254)
Q Consensus 96 ~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (254)
++.+.++.++.|+++++++++++|||++++ +++++++.+.|+.+.+..
T Consensus 140 vs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~~-------------------------- 187 (350)
T PTZ00343 140 VSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASVK-------------------------- 187 (350)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheecc--------------------------
Confidence 999999999999999999999999999998 999999999999997611
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC------CcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310 176 GNENWFKGSALILTSHISWSAWLILLATVSKDYP------APLSLNALICFFASLQSSFVALFLGR 235 (254)
Q Consensus 176 ~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (254)
+.+....|++++++|+++|+.++++.||..++.+ ++.....++..++++.++|+....|.
T Consensus 188 ~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~ 253 (350)
T PTZ00343 188 ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEG 253 (350)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0112367999999999999999999999876532 12335555688999999999886664
No 11
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.72 E-value=7.3e-16 Score=135.51 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041310 7 YVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLE-RKHRPKLSFAVMAKIFVLALFGATIHLN 85 (254)
Q Consensus 7 ~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~l~~~ 85 (254)
..+.+.++++|+...+.+|...++ -++ ..++++..+++++.++...+. ++.+++.+++.+..... +.++...++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAI-SAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHH-HHHHHHHHHH
Confidence 467789999999999999976655 444 347777777777777665421 22223333344444444 4444578899
Q ss_pred HHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCcccc
Q 041310 86 VYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIH 165 (254)
Q Consensus 86 l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~ 165 (254)
+++.+++++++++++.+.++.|+++.+++++++|||++++ +++|+++++.|+.++.. ++.
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~~------------- 138 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SRF------------- 138 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-ccc-------------
Confidence 9999999999999999999999999999999999999998 99999999999998862 110
Q ss_pred ccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 041310 166 IYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYP 209 (254)
Q Consensus 166 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~ 209 (254)
......|+.+.++++++|+.|.+..|+..++.+
T Consensus 139 -----------~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~ 171 (281)
T TIGR03340 139 -----------AQHRRKAYAWALAAALGTAIYSLSDKAAALGVP 171 (281)
T ss_pred -----------cccchhHHHHHHHHHHHHHHhhhhccccccchh
Confidence 011236888999999999999999887655443
No 12
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.66 E-value=8.1e-16 Score=117.72 Aligned_cols=125 Identities=23% Similarity=0.414 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 041310 15 FAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYV 94 (254)
Q Consensus 15 ~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~ 94 (254)
++||.+.+..|...++ .||....++|+.++.+ ++++....+++..++.+.+++......|.++...++.+++.+++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4699999999999988 9999999999999998 6666555444333456778888888899887789999999999999
Q ss_pred chhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 95 SLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 95 ~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
++++++.+.+++|+++.+++++++||+++++ +++|+++.+.|+.+++
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 9999999999999864
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.63 E-value=4.1e-14 Score=126.65 Aligned_cols=200 Identities=19% Similarity=0.267 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 041310 12 LVQFAYGGSNILVKISLEKGLN-HLVFVVYRHVLAMVLLGPFAYVLER-KHRPKLSFAVMAKIFVLALFGATIHLNVYYT 89 (254)
Q Consensus 12 ~a~~~wg~~~v~~K~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~ 89 (254)
..+++=..+.+.+....+.|.+ |..-.+.-+..-.++..+....+++ +...+..+++|...++++++. ..++.+...
T Consensus 20 ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~D-v~aN~~~v~ 98 (334)
T PF06027_consen 20 VLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLD-VEANYLVVL 98 (334)
T ss_pred HHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHH-HHHHHHHHH
Confidence 3445555566666665555555 5555555555545555554443322 111222345666777789998 577889999
Q ss_pred hhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCcccccccc
Q 041310 90 GFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDT 169 (254)
Q Consensus 90 ~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~ 169 (254)
|++||+.+.+.++..+.-+++.+++++++|||.++. +++|++++++|+.+++..+... ++
T Consensus 99 a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~------------~~-- 158 (334)
T PF06027_consen 99 AYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLS------------GS-- 158 (334)
T ss_pred HhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccc------------cc--
Confidence 999999999999999999999999999999999998 9999999999999887433110 11
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 041310 170 DQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRN 236 (254)
Q Consensus 170 ~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (254)
.+.++.+...||++++.++++||+++++.++..|+.+ ......+..++|.++..+...++|+.
T Consensus 159 ---~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~ 221 (334)
T PF06027_consen 159 ---DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERS 221 (334)
T ss_pred ---cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehh
Confidence 1123456689999999999999999999999999886 47778888889999888888888774
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.63 E-value=1.2e-13 Score=120.13 Aligned_cols=183 Identities=25% Similarity=0.399 Sum_probs=137.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIH 83 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~ 83 (254)
.+.....+...+.|+.+....|...++..++....+.|+.++.+...+.... ++...++.. +++......+.++...+
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRPAL-RPWLLLLLLALLGLALP 83 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccccc-cchHHHHHHHHHHHHHH
Confidence 4567788888899999999999988764666777777999998874443322 111111111 22344555566666788
Q ss_pred HHHHHHhhhccchhhHhhhcchhHHHHHHHHH-HHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCc
Q 041310 84 LNVYYTGFSYVSLTVATALSNVIPSFTFLLAF-LLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKP 162 (254)
Q Consensus 84 ~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~-~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~ 162 (254)
+.+++.++++++++++..+.++.|+++.++++ +++|||++++ ++.+..+++.|+.++...+ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~-~---------- 146 (292)
T COG0697 84 FLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGG-G---------- 146 (292)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCC-C----------
Confidence 99999999999999999999999999999997 7779999998 9999999999999987211 0
Q ss_pred cccccccccccCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHH-HHHH
Q 041310 163 LIHIYDTDQLRHHGNEN-WFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNA-LICF 220 (254)
Q Consensus 163 ~~~~~~~~~~~~~~~~~-~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~-~~~~ 220 (254)
.... ...|+.+.++++++|+++.+.+|+.. +.+ +..... +++.
T Consensus 147 -------------~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~ 191 (292)
T COG0697 147 -------------GGGILSLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL 191 (292)
T ss_pred -------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH
Confidence 0111 46899999999999999999998877 443 344454 4544
No 15
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.57 E-value=2.3e-14 Score=109.02 Aligned_cols=134 Identities=15% Similarity=0.230 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 041310 6 PYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRP-KLSFAVMAKIFVLALFGATIHL 84 (254)
Q Consensus 6 ~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~l~~ 84 (254)
...+.+++++.||...++.|...++ +||...++.|.....+.+..+....++.+.+ ..+.|.|..+.+-|+.+ .+..
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-glsw 81 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHHH
Confidence 4678899999999999999999987 9999999999999988888887765543222 34778899999999765 7999
Q ss_pred HHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
.+||.+++...++....+-.+.|++++++++++++||++.+ +|+|+++..+|++++.
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999997 9999999999998764
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.48 E-value=3.1e-12 Score=113.17 Aligned_cols=181 Identities=12% Similarity=0.092 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041310 6 PYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLN 85 (254)
Q Consensus 6 ~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~ 85 (254)
++++.++++++||+..+..|... |.++.++. |..++.+++..+....+ +. +...++.+..-...|++ ....+.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~-~~-~~~~~~~~~~g~l~G~~-w~ig~~ 74 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFV-LP-EFWALSIFLVGLLSGAF-WALGQI 74 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHh-CC-cccccHHHHHHHHHHHH-HHhhhh
Confidence 46788999999999999999865 58888776 78888877766655433 21 11122333334444444 467889
Q ss_pred HHHHhhhccchhhHhhhcc-hhHHHHHHHHHHHccccccccccCCCch----hHHHHHHHHhHHHHhhhcccccccCccC
Q 041310 86 VYYTGFSYVSLTVATALSN-VIPSFTFLLAFLLGMEKVKITSGRGGAK----VLGTIVCIGGSLIFTFWKRGCLLKGFVQ 160 (254)
Q Consensus 86 l~~~~l~~~~~~~a~~l~~-~~Pv~~~lls~~~~~e~~~~~~~~~~~~----~~g~~l~~~Gv~li~~~~g~~~~~~~~~ 160 (254)
+++.++++++.+.+..+.+ +.|++..+.+.+++||+.+++ + ++|+++.++|+.++...++..
T Consensus 75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~------- 141 (290)
T TIGR00776 75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKS------- 141 (290)
T ss_pred hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccc-------
Confidence 9999999999999999988 888999999999999999997 8 999999999988875221000
Q ss_pred CccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHH
Q 041310 161 KPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICF 220 (254)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~ 220 (254)
. .+.+..+...|.++.++|+++|+.|.+..|+. +++ |.+.++.+..
T Consensus 142 ---------~--~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~ 187 (290)
T TIGR00776 142 ---------A--GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAI 187 (290)
T ss_pred ---------c--ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHH
Confidence 0 00000233679999999999999999999875 354 5666544443
No 17
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.46 E-value=2.5e-12 Score=111.19 Aligned_cols=131 Identities=21% Similarity=0.316 Sum_probs=112.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEKGLN--HLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGAT 81 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~--p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 81 (254)
.++..+.+.+++.|+.+.+..|...++ .+ +..+..+|+.++.+++.+.....++. +..+.+++......+++++.
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 203 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIGTA 203 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHHHH
Confidence 468899999999999999999998865 66 44556678999998888877653322 23456778788889998878
Q ss_pred HHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhH
Q 041310 82 IHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGS 143 (254)
Q Consensus 82 l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv 143 (254)
+++.+|+.++++.++++++.+.+++|+++.++++++++|+++.+ ++.|.++.+.|+
T Consensus 204 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999998 999999999886
No 18
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.43 E-value=1.9e-11 Score=103.39 Aligned_cols=186 Identities=14% Similarity=0.095 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041310 6 PYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLN 85 (254)
Q Consensus 6 ~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~ 85 (254)
+++++..++..-=...-+.|...+. ++|...+.+|..+++++++++.... +.+.+++++......|+.- ...+.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~RPw----r~r~~~~~~~~~~~yGvsL-g~MNl 86 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFRPW----RRRLSKPQRLALLAYGVSL-GGMNL 86 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhhHH----HhccChhhhHHHHHHHHHH-HHHHH
Confidence 4666777766666777788999988 9999999999999999988875321 1346778888888889875 56789
Q ss_pred HHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCcccc
Q 041310 86 VYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIH 165 (254)
Q Consensus 86 l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~ 165 (254)
+||.++++++-+.+..+.++-|+.+++++. +|. ...+.+.+++.|+.++... +.
T Consensus 87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr~--------~d~vwvaLAvlGi~lL~p~-~~------------- 140 (292)
T COG5006 87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS----RRL--------RDFVWVALAVLGIWLLLPL-GQ------------- 140 (292)
T ss_pred HHHHHHHhccchhhhhhhhccHHHHHHHhc----cch--------hhHHHHHHHHHHHHhheec-cC-------------
Confidence 999999999999999999999999887653 221 2678889999999988621 11
Q ss_pred ccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHh
Q 041310 166 IYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFL 233 (254)
Q Consensus 166 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (254)
+....+..|..++++++.||++|++..||..+..+ ..+-+..-+.++++..+|+....
T Consensus 141 ---------~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ 198 (292)
T COG5006 141 ---------SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQ 198 (292)
T ss_pred ---------CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhh
Confidence 11233568999999999999999999999887655 46778899999999999998744
No 19
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.35 E-value=1.7e-10 Score=99.70 Aligned_cols=192 Identities=15% Similarity=0.124 Sum_probs=144.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-C--CCCHHHHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHR-P--KLSFAVMAKIFVLALFGA 80 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-~--~~~~~~~~~~~~~g~~~~ 80 (254)
.||++..+.+.++||......|.. ++ .|+.++.+.|.+.+...++.+....++.+. . ..++|.+....+.+++.
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li- 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI- 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH-
Confidence 589999999999999999999986 45 999999999999998887776655433211 0 12345666677777764
Q ss_pred HHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccC
Q 041310 81 TIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQ 160 (254)
Q Consensus 81 ~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~ 160 (254)
..+...|.++.+.-.+-++++=.+.+|++.++++.+++|||+++- |+++.+++.+|+.......|
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g--------- 147 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLG--------- 147 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcC---------
Confidence 789999999999999999999999999999999999999999997 99999999999998874322
Q ss_pred CccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcCCC
Q 041310 161 KPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGRNP 237 (254)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (254)
+.. ...+.=+++|+.|-.+-|+. + .++ .+-.+..++.-....+.+.+..+..+
T Consensus 148 ----------------~lp-----wval~la~sf~~Ygl~RK~~-~-v~a-~~g~~lE~l~l~p~al~yl~~l~~~~ 200 (293)
T COG2962 148 ----------------SLP-----WVALALALSFGLYGLLRKKL-K-VDA-LTGLTLETLLLLPVALIYLLFLADSG 200 (293)
T ss_pred ----------------CCc-----HHHHHHHHHHHHHHHHHHhc-C-Cch-HHhHHHHHHHHhHHHHHHHHHHhcCc
Confidence 111 22355678999999885443 2 332 44444555554444445555454443
No 20
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.31 E-value=5.3e-13 Score=113.57 Aligned_cols=199 Identities=16% Similarity=0.228 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHHH
Q 041310 6 PYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH-RPKLSFAVMAKIFVLALFGATIHL 84 (254)
Q Consensus 6 ~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~l~~ 84 (254)
+.++..++ ..+..+.++.+..+ +.+|.+....|+++-.++..|.....+... .|+ ....++++.|+.|+ ...
T Consensus 39 gl~l~~vs-~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~---g~R~~LiLRg~mG~-tgv 111 (346)
T KOG4510|consen 39 GLLLLTVS-YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPE---GKRKWLILRGFMGF-TGV 111 (346)
T ss_pred CceehhhH-HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCC---CcEEEEEeehhhhh-hHH
Confidence 44555555 56666666666554 278999999998777776666544322111 111 12234567788874 456
Q ss_pred HHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccc
Q 041310 85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLI 164 (254)
Q Consensus 85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~ 164 (254)
.+.|++++|.+.++|+++.++.|+++.+++|.++|||.++. +.++..+.+.|+++++ +|+..++
T Consensus 112 mlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv---RPpFlFG------- 175 (346)
T KOG4510|consen 112 MLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV---RPPFLFG------- 175 (346)
T ss_pred HHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe---cCCcccC-------
Confidence 67788999999999999999999999999999999999997 9999999999999998 5544332
Q ss_pred cccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHH
Q 041310 165 HIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVA 230 (254)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (254)
++|.++.++.-+....|...++.++++-|.-.|+.|++.|+.+. .....+..+++.+..+...
T Consensus 176 --~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~ 238 (346)
T KOG4510|consen 176 --DTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGC 238 (346)
T ss_pred --CCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHH
Confidence 11111111222334567888888888888877788888787653 4444455556655554443
No 21
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.30 E-value=1.5e-10 Score=102.37 Aligned_cols=135 Identities=7% Similarity=0.075 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310 5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL 84 (254)
Q Consensus 5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~ 84 (254)
.|.++.+.+++.|+.+.+..|...++ .+|..... -..++++++.++...... ....+...+...+.+|++++.+.+
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGAE-HGPATVAI-GSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALPY 223 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHH-HHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999998765 88877654 445666666666544322 122344556666789999988999
Q ss_pred HHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhh
Q 041310 85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFW 149 (254)
Q Consensus 85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~ 149 (254)
.+|+++++++++++++.+.+++|++..++++++++|+++.. +++|.++.++|++.....
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999997 999999999999988643
No 22
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.28 E-value=1.7e-11 Score=93.48 Aligned_cols=103 Identities=17% Similarity=0.331 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHH
Q 041310 39 VYRHVLAMVLLGPFAYVLERKH--RPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFL 116 (254)
Q Consensus 39 ~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~ 116 (254)
.+|+.++.+.+..+...+++.+ .+..+++++......|+++...++.++++|+++++ +.++.+.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 6899999988888776643211 11233355566677788875688999999999999 58889999999999999999
Q ss_pred HccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310 117 LGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF 148 (254)
Q Consensus 117 ~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 148 (254)
++|||++++ ++.+++++++|++++..
T Consensus 81 ~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 81 FFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 999999998 99999999999999973
No 23
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.27 E-value=2.1e-10 Score=101.43 Aligned_cols=136 Identities=16% Similarity=0.098 Sum_probs=114.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIH 83 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~ 83 (254)
.++.++.+.+++.|+.+.+..|...+ -++....+++..++++++.++....+.......+.+++....+.|++++.+.
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999998643 3455667888888888887776543221111235678888899999988899
Q ss_pred HHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 84 LNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 84 ~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
+.+|++++++.++++++.+.+++|++++++++++++|+++.. +++|.++.+.|+.+..
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 9999999999999876
No 24
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.19 E-value=8e-10 Score=97.90 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310 5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL 84 (254)
Q Consensus 5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~ 84 (254)
.|.++.+.++++|+.+.+..|...++ .++..... ..+.+.+.+.... ........+.+.+...++.|+ .+.+.+
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~~---~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~-~t~~~~ 229 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLFF---ILTALALWIKYFL-SPQPAMVFSLPAIIKLLLAAA-AMGFGY 229 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHHH---HHHHHHHHHHHHH-hcCccccCCHHHHHHHHHHHH-HHHHHH
Confidence 37889999999999999999998655 78766532 3333333333322 221112345667777777775 457899
Q ss_pred HHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310 85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF 148 (254)
Q Consensus 85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 148 (254)
.+|+.++++.++++++.+.+++|++..++++++++|+++.. +++|.++.+.|+.+...
T Consensus 230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence 99999999999999999999999999999999999999997 99999999999988763
No 25
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.15 E-value=2e-09 Score=97.93 Aligned_cols=136 Identities=9% Similarity=0.071 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCHHHHHHHHHHHHHHH
Q 041310 6 PYVAMILVQFAYGGSNILVKISLEKGLNHL-VFVVYRHVLAMVLLGPFAYVLERKHRP----KLSFAVMAKIFVLALFGA 80 (254)
Q Consensus 6 ~~l~li~a~~~wg~~~v~~K~~~~~~~~p~-~~~~~R~~~a~l~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~ 80 (254)
+..+++.+++.|+.+.+..|...++ .|+. ...++...++.+.+.+.....++...+ ..+.. ....++.++. +
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-t 266 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-T 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-H
Confidence 6678899999999999999988776 7554 666777777776666555543332111 12222 2235555655 4
Q ss_pred HHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhc
Q 041310 81 TIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWK 150 (254)
Q Consensus 81 ~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~ 150 (254)
.+.+.+|++++++.+++.++.+.+++|++++++++++++|++++. +++|.++.+.|+.+....+
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhh
Confidence 678999999999999999999999999999999999999999998 9999999999999987433
No 26
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.10 E-value=5.1e-09 Score=92.88 Aligned_cols=137 Identities=15% Similarity=0.238 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHHHH
Q 041310 5 SPYVAMILVQFAYGGSNILVKISLEKG--LNHLVFVVYRHVLAMVLLGPFAYVLERKH-----RPKLSFAVMAKIFVLAL 77 (254)
Q Consensus 5 ~~~l~li~a~~~wg~~~v~~K~~~~~~--~~p~~~~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~ 77 (254)
.|.++.+.+++.|+.+.+..|...++. .+......+-..++.+.+.......+... ....+.+.+...+++|+
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i 222 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence 588899999999999999999875441 22233344444444443333332222211 12346678888999999
Q ss_pred HHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 78 FGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 78 ~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
+++.+.+.+|+.++++.++++++.+.+++|++..++++++++|+++.. +++|.++.++|+.+..
T Consensus 223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 998999999999999999999999999999999999999999999997 9999999999998775
No 27
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.09 E-value=2.7e-08 Score=88.53 Aligned_cols=185 Identities=14% Similarity=0.090 Sum_probs=137.9
Q ss_pred HHHHHHHhc-CCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhh
Q 041310 22 ILVKISLEK-GLN--HLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTV 98 (254)
Q Consensus 22 v~~K~~~~~-~~~--p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~ 98 (254)
+..+..... ... |..+++..+....+...+.....+++ +.++..+...+..+++. .++..+-+.+++|++...
T Consensus 17 ~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~ 92 (303)
T PF08449_consen 17 ILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP---KSRKIPLKKYAILSFLF-FLASVLSNAALKYISYPT 92 (303)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc---CCCcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHH
Confidence 444444333 344 88999999999887777665443312 22334455566677775 678889999999999999
Q ss_pred HhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCCCCC
Q 041310 99 ATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNE 178 (254)
Q Consensus 99 a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (254)
-.++-++.|+.+++++.+++|+|.+++ ++++.++..+|+.+....+....+ . .+....
T Consensus 93 ~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~----------~------~~~~~~ 150 (303)
T PF08449_consen 93 QIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS----------S------SNSSSF 150 (303)
T ss_pred HHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeeccccccc----------c------cccccc
Confidence 999999999999999999999999998 999999999999988743311100 0 011112
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-cchHHHHHHHHHHHHHHHHHHH
Q 041310 179 NWFKGSALILTSHISWSAWLILLATVSKDYPA-PLSLNALICFFASLQSSFVALF 232 (254)
Q Consensus 179 ~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 232 (254)
+...|+++.+.+.++-+...+.++|..++++. +....++...++.+...+....
T Consensus 151 ~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~ 205 (303)
T PF08449_consen 151 SSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFL 205 (303)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 23349999999999999999999999877653 5678888999988888887776
No 28
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.03 E-value=2.2e-09 Score=94.40 Aligned_cols=134 Identities=9% Similarity=0.019 Sum_probs=94.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHL----VFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFG 79 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~----~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 79 (254)
.++..+.+.+++.|+.+.+..|...++ .+|. ....+.+.+.++.+.+.....+++. .......+......+.+.
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 220 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAALG-VPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS-MFPYARQILPSATLGGLM 220 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccc-hhcccccHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHHHHHHHH
Confidence 346678899999999999999976433 4442 2233333333222222222212111 111223344455666666
Q ss_pred HHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHH
Q 041310 80 ATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLI 145 (254)
Q Consensus 80 ~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 145 (254)
+.+.+.+|++++++.++++++.+.+++|++..++++++++|+++.. +++|.++.++|+.+
T Consensus 221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l 280 (281)
T TIGR03340 221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence 6789999999999999999999999999999999999999999997 99999999999875
No 29
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=98.99 E-value=4.8e-09 Score=93.43 Aligned_cols=104 Identities=22% Similarity=0.286 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccC
Q 041310 81 TIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQ 160 (254)
Q Consensus 81 ~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~ 160 (254)
.++++.+..++++|+++..+++.++.-+|+..++.++..||+++. |.++..+.+.|+++++..+ +..
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~--s~~----- 236 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGD--SKQ----- 236 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecc--ccc-----
Confidence 578899999999999999999999999999999999999999997 9999999999999987432 110
Q ss_pred CccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 041310 161 KPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDY 208 (254)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~ 208 (254)
+++..+.....|+++++++|+.||+|+++.||...+.
T Consensus 237 -----------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~e 273 (416)
T KOG2765|consen 237 -----------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDE 273 (416)
T ss_pred -----------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1112244568999999999999999999999876655
No 30
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.94 E-value=8.6e-09 Score=91.44 Aligned_cols=139 Identities=16% Similarity=0.241 Sum_probs=105.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---------CCHHHHHH-H
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEK-GLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPK---------LSFAVMAK-I 72 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~---------~~~~~~~~-~ 72 (254)
..|.++.+++++.|+...+..|...++ +.||..+..+....+.+.+.|+....+...... ........ .
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 348889999999999999999998761 399999999999999998888876533211000 00001111 2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310 73 FVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF 148 (254)
Q Consensus 73 ~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 148 (254)
...+.......+.+++.+++++++..+++..+..|+++.++++++++|+++.+ +++|.++.+.|+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence 22222222333457778999999999999999999999999999999999998 99999999999998763
No 31
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.85 E-value=1.3e-07 Score=81.61 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHH
Q 041310 65 SFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSL 144 (254)
Q Consensus 65 ~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 144 (254)
++|+...+..=++++ .+.+.+.+.++++.+++.-.++..+-.+++++++++++|+|++++ ||+++.+.++|+.
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~ 85 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV 85 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence 456777777778886 788899999999999999999999999999999999999999998 9999999999999
Q ss_pred HHhhhcccccccCccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-cchHHHHHHHHHH
Q 041310 145 IFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPA-PLSLNALICFFAS 223 (254)
Q Consensus 145 li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~-~~~~~~~~~~~~~ 223 (254)
+........ . ++.++++.+.+..+.+...|.++.+.++++-++..++.+|..|+.+. ....+......|.
T Consensus 86 lv~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi 156 (244)
T PF04142_consen 86 LVQLSSSQS-------S--DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGI 156 (244)
T ss_pred eeecCCccc-------c--ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 876322110 0 00000000001123456789999999999999999999999987543 2334555566666
Q ss_pred HHHHHHHHH
Q 041310 224 LQSSFVALF 232 (254)
Q Consensus 224 ~~~~~~~~~ 232 (254)
++.++....
T Consensus 157 ~~~~~~~~~ 165 (244)
T PF04142_consen 157 LFNLLALLL 165 (244)
T ss_pred HHHHHHHhc
Confidence 666555443
No 32
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.79 E-value=2e-07 Score=82.61 Aligned_cols=132 Identities=15% Similarity=0.155 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041310 8 VAMILVQFAYGGSNILVKISLEKG-LNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNV 86 (254)
Q Consensus 8 l~li~a~~~wg~~~v~~K~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l 86 (254)
+..+.+++.|+.+.+..|....++ .++.....+-..++.+...+.... ............+......|+. +.+.+.+
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~-t~i~~~~ 229 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGIV-TTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHHH-HHHHHHH
Confidence 456788999999999999864331 122333333333433332221100 0000111122223344445554 4689999
Q ss_pred HHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 87 YYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 87 ~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
++.++++.+++.++.+.+++|++..++++++++|+++.. +++|.++.+.|+.++.
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 9999999999988876
No 33
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.78 E-value=3.6e-07 Score=79.35 Aligned_cols=133 Identities=20% Similarity=0.270 Sum_probs=106.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVV-YRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATI 82 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l 82 (254)
..+.++.+.+++.|+.+.+..|... + .++..... +..........+.. ..... ...+.+++......|++++..
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~i 227 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTGL 227 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999876 4 77777776 44442222222221 11111 234567888889999998768
Q ss_pred HHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 83 HLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 83 ~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
.+.+++.++++.+++..+.+.++.|++..++++++++|+++.+ +++|.++.+.|+.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998 9999999999999876
No 34
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.73 E-value=5.4e-07 Score=81.84 Aligned_cols=137 Identities=14% Similarity=0.219 Sum_probs=100.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC--------CCCHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEK------GLNHLVFVVYRHVLAMVLLGPFAYVLERKHRP--------KLSFAVM 69 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~--------~~~~~~~ 69 (254)
..|.++.+++++.|+...+..|...++ ..++.....+-..+++++++|+....+..... ..+...+
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 358889999999999999999998764 25677677777888888888887643321000 0000011
Q ss_pred HHHHHHHHHHHHHHHHHHH----HhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHH
Q 041310 70 AKIFVLALFGATIHLNVYY----TGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLI 145 (254)
Q Consensus 70 ~~~~~~g~~~~~l~~~l~~----~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 145 (254)
...... ++...+.+.+++ .+++++++...++..++.|+++.++++++++|+++.. +++|.++.+.|+.+
T Consensus 273 ~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l 345 (350)
T PTZ00343 273 GIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL 345 (350)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence 112222 222234444444 6999999999999999999999999999999999997 99999999999987
Q ss_pred Hh
Q 041310 146 FT 147 (254)
Q Consensus 146 i~ 147 (254)
-.
T Consensus 346 Ys 347 (350)
T PTZ00343 346 YS 347 (350)
T ss_pred Hh
Confidence 54
No 35
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.71 E-value=8.7e-07 Score=70.37 Aligned_cols=133 Identities=19% Similarity=0.295 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CC-------CHHH
Q 041310 6 PYVAMILVQFAYGGSNILVKISLEK------GLNHLVFVVYRHVLAMVLLGPFAYVLERKHRP----KL-------SFAV 68 (254)
Q Consensus 6 ~~l~li~a~~~wg~~~v~~K~~~~~------~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~----~~-------~~~~ 68 (254)
|..+.+.+.+.-+...+..|...++ ..++.++..+-...+.+.+++.....++.... .. ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 4678899999999999999998776 68999999999999999999988776543310 00 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHH
Q 041310 69 MAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLI 145 (254)
Q Consensus 69 ~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 145 (254)
+...+..|++. ...+...+..++++++...+++...-.+.+.++++++++|+++.+ +++|+++++.|..+
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 44556666665 577889999999999999999999999999999999999999997 99999999999874
No 36
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.70 E-value=3.5e-07 Score=80.95 Aligned_cols=129 Identities=15% Similarity=0.113 Sum_probs=101.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH---HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRH---VLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGA 80 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~---~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 80 (254)
.|+..+.+++.+.|+.+.+..|.. + .||.+..+... .+++.++.+.. + +. +|. ..+........|++ .
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~--~-~~-~~~-~~~~~~~~~~~Gi~-~ 221 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGIIFNLGH--I-LA-KPL-KKYAILLNILPGLM-W 221 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHHHHHHH--h-cc-cch-HHHHHHHHHHHHHH-H
Confidence 679999999999999999999975 3 88888854444 34444333322 1 11 222 22334444558888 4
Q ss_pred HHHHHHHHHhhh-ccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchh----HHHHHHHHhHHHHh
Q 041310 81 TIHLNVYYTGFS-YVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKV----LGTIVCIGGSLIFT 147 (254)
Q Consensus 81 ~l~~~l~~~~l~-~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~----~g~~l~~~Gv~li~ 147 (254)
.+.+.+|+.+.+ +.+++.++++.+..|+...+.+.+++||+.+++ ++ +|.++.+.|+.++.
T Consensus 222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence 788999999999 999999999999999999999999999999998 88 99999999998875
No 37
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.63 E-value=1.1e-06 Score=66.80 Aligned_cols=69 Identities=22% Similarity=0.204 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 73 FVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 73 ~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
...++++..+.+.++..++++.|.+.+..+.++.|+++.+++++++|||++++ +++|+++.++|++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 33444666788999999999999999999989999999999999999999998 9999999999999875
No 38
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.61 E-value=7.6e-07 Score=75.82 Aligned_cols=131 Identities=10% Similarity=0.063 Sum_probs=111.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310 5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL 84 (254)
Q Consensus 5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~ 84 (254)
-|..+.+.+..+|+.+-+..|..-+. .+.-.-+..-+.+++++.+|+........ -.+.+-+..-+.+|++++.+.|
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlSSalPY 224 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLSSALPY 224 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHhcccch
Confidence 46778899999999999999998655 66677788899999999999876533221 2344556667888999999999
Q ss_pred HHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHH
Q 041310 85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSL 144 (254)
Q Consensus 85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 144 (254)
.+...++++.+...-+++++++|.+.++.++++++|+++.. ||++++..+.+..
T Consensus 225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsa 278 (292)
T COG5006 225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998 9999988777655
No 39
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.47 E-value=4.8e-06 Score=64.94 Aligned_cols=118 Identities=17% Similarity=0.212 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310 5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL 84 (254)
Q Consensus 5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~ 84 (254)
+++++++...++=+...+..|...++ .+..+.... . ... . .... .| ......|+..+.+++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~----~---~~~~--~p-------~~~i~lgl~~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAA----L---LAFG--LA-------LRAVLLGLAGYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHH----H---HHHh--cc-------HHHHHHHHHHHHHHH
Confidence 47888888888889999999998876 554332221 1 100 0 0000 01 114567777778999
Q ss_pred HHHHHhhhccchhhHhhhcchhHHHHHHHHHH--HccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFL--LGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~--~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
.+|..++++.+.+.+..+.+..++++.+.++. +++|+++.+ +++|+++.++|+.++.
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888888885 899999998 9999999999999986
No 40
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.38 E-value=0.00023 Score=63.66 Aligned_cols=205 Identities=15% Similarity=0.137 Sum_probs=146.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhhcC----CCCC------CCHHHHHHH
Q 041310 6 PYVAMILVQFAYGGSNILVKISLEKG---LNHLVFVVYRHVLAMVLLGPFAYVLERK----HRPK------LSFAVMAKI 72 (254)
Q Consensus 6 ~~l~li~a~~~wg~~~v~~K~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~------~~~~~~~~~ 72 (254)
.++.++...+.++.-....|.....+ +.|...++.--++-.++...+.+...|+ ..+. ..+++....
T Consensus 16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~ 95 (345)
T KOG2234|consen 16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKV 95 (345)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHH
Confidence 46777888889999999999887665 6677777777777777777776665322 1111 123345555
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhccc
Q 041310 73 FVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRG 152 (254)
Q Consensus 73 ~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~ 152 (254)
..=++++ ++.+-++|.++.+.+++.-.+...+--+-+++++.+++++|++++ ||.+.++.+.|+.++.....+
T Consensus 96 ~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 96 SVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred HHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCC
Confidence 5556665 677779999999999999999999999999999999999999998 999999999999988622111
Q ss_pred ccccCccCCcccccccccccc-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc-chHHHHHHHHHHHHHHHHH
Q 041310 153 CLLKGFVQKPLIHIYDTDQLR-HHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAP-LSLNALICFFASLQSSFVA 230 (254)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 230 (254)
. +++. .....+...|....+.+.+.-+.-.++.+|+.|+-..+ +..|.-...+|.++.+...
T Consensus 169 ~----------------~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~ 232 (345)
T KOG2234|consen 169 P----------------TGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTI 232 (345)
T ss_pred C----------------CCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 1 0011 12245668899999999999999999999999864322 2223333445555544444
Q ss_pred HHh
Q 041310 231 LFL 233 (254)
Q Consensus 231 ~~~ 233 (254)
+..
T Consensus 233 ~~~ 235 (345)
T KOG2234|consen 233 LLQ 235 (345)
T ss_pred hhc
Confidence 333
No 41
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.37 E-value=3.7e-06 Score=74.93 Aligned_cols=181 Identities=16% Similarity=0.105 Sum_probs=137.8
Q ss_pred HHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHh
Q 041310 23 LVKISLEK-GLN-HLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVAT 100 (254)
Q Consensus 23 ~~K~~~~~-~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~ 100 (254)
..|..++. |.+ |..++..++.++.+.+...-....++..+..++..+...+-+|++. .+...+-..++++.+++-.-
T Consensus 35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF~q 113 (316)
T KOG1441|consen 35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSFYQ 113 (316)
T ss_pred eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhHHH
Confidence 45776662 243 8888888888877776665544323322222445677788888886 57788889999999999999
Q ss_pred hhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCCCCCch
Q 041310 101 ALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENW 180 (254)
Q Consensus 101 ~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (254)
.+=.++|+++.++++++.+|+.+++ .+..++....|+.+.... +..-+
T Consensus 114 ~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~~--------------------------e~~fn 161 (316)
T KOG1441|consen 114 TIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASVT--------------------------ELSFN 161 (316)
T ss_pred HHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeeec--------------------------ccccc
Confidence 9999999999999999999999997 788888888888876521 12234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--h--CCCcchHHHHHHHHHHHHHH-HHHHHhcCCC
Q 041310 181 FKGSALILTSHISWSAWLILLATVSK--D--YPAPLSLNALICFFASLQSS-FVALFLGRNP 237 (254)
Q Consensus 181 ~~G~~l~l~aa~~~A~~~i~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 237 (254)
..|...++++.+..+...|+.|+..+ + .+ +.....++.-++.+.++ |.....|++.
T Consensus 162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~ 222 (316)
T KOG1441|consen 162 LFGFISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNK 222 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccc
Confidence 78999999999999999999999874 2 33 46777777778888888 8877766643
No 42
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.31 E-value=3.1e-08 Score=84.30 Aligned_cols=190 Identities=18% Similarity=0.273 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041310 13 VQFAYGGSNILVKISLEKGLN-HLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGF 91 (254)
Q Consensus 13 a~~~wg~~~v~~K~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l 91 (254)
+.++=+.++.....+ +.|.+ |..-.+.-+..=+++..++..+++ + .-+..|.+.+++++... =++++...+.
T Consensus 27 SL~~t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~----~~~~~~~hYilla~~DV-EaNy~vV~Ay 99 (336)
T KOG2766|consen 27 SLLITSTAFTSSELA-RKGINAPTSQTFLNYVLLALVYGPIMLFRR-K----YIKAKWRHYILLAFVDV-EANYFVVKAY 99 (336)
T ss_pred HHHHHcchhhhHHHH-hccCCCccHHHHHHHHHHHHHHhhHHHhhh-H----HHHHHHHHhhheeEEee-cccEEEeeeh
Confidence 333333333333333 33344 777788888888888888876633 2 12234555778888774 3455667799
Q ss_pred hccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCcccccccccc
Q 041310 92 SYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQ 171 (254)
Q Consensus 92 ~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~ 171 (254)
|||+.....++-.-.-.-+.+++|+++|-|-.+. ++.|.++|+.|++++++.+ . |+.|
T Consensus 100 QyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sD--V-----------~agd--- 157 (336)
T KOG2766|consen 100 QYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSD--V-----------HAGD--- 157 (336)
T ss_pred hhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEee--e-----------cccc---
Confidence 9999999988866555556678999999999987 9999999999999988432 1 1111
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310 172 LRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR 235 (254)
Q Consensus 172 ~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (254)
.+++.+..+||.+.+++|-+||+.++.-+-..|+.+. ..+.....++|+++...- .++++
T Consensus 158 --~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d~-~elm~~lgLfGaIIsaIQ-~i~~~ 217 (336)
T KOG2766|consen 158 --RAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNADR-VELMGFLGLFGAIISAIQ-FIFER 217 (336)
T ss_pred --ccCCCCCccCcEEEEecceeeeeccccHHHHHhcCcH-HHHHHHHHHHHHHHHHHH-Hhhhc
Confidence 1234567899999999999999999998888888764 777888888999988766 56665
No 43
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.23 E-value=3.2e-05 Score=69.65 Aligned_cols=138 Identities=14% Similarity=0.132 Sum_probs=107.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHH
Q 041310 3 AYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKL--SFAVMAKIFVLALFGA 80 (254)
Q Consensus 3 ~~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~ 80 (254)
..+|.++++.+++++|.+.+..|....+ .|+.++.+.=.+++.++..+.....+++...+. +.+....++.-++. .
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~-l 243 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC-L 243 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH-H
Confidence 4678999999999999999999999887 999999888888888888887766666543322 33333333333333 2
Q ss_pred HHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310 81 TIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF 148 (254)
Q Consensus 81 ~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 148 (254)
...+.+.-..+++++++...+=.-+..++..+++.+++|+++++. .++|.++.++|.++...
T Consensus 244 f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 244 FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence 455556677888888887776667788999999999999999996 99999999999998763
No 44
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.97 E-value=0.0004 Score=60.35 Aligned_cols=132 Identities=19% Similarity=0.174 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccc
Q 041310 76 ALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLL 155 (254)
Q Consensus 76 g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~ 155 (254)
+++. .....+.|.|+.+|+++.-..+-...-+|+.+++.-+++++++.+ +|+|+....+|++.+...+ ..
T Consensus 93 al~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d-~~-- 162 (372)
T KOG3912|consen 93 ALCD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD-VH-- 162 (372)
T ss_pred HHHH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee-cc--
Confidence 3444 344567789999999999999999999999999999999999998 9999999999999774211 10
Q ss_pred cCccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-CcchHHHHHHHHHHHHHHHHH
Q 041310 156 KGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYP-APLSLNALICFFASLQSSFVA 230 (254)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 230 (254)
.++++ .+...+...|+++.+.+=+.-|...++-+|..+++. +|.....|+-++|.+.+...+
T Consensus 163 -----------~~~~p--~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~ 225 (372)
T KOG3912|consen 163 -----------LVTDP--YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLA 225 (372)
T ss_pred -----------cccCC--ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHH
Confidence 01111 112344578999999999999999999988887653 368889999888855444433
No 45
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.89 E-value=6.2e-05 Score=62.18 Aligned_cols=97 Identities=20% Similarity=0.270 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccC
Q 041310 81 TIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQ 160 (254)
Q Consensus 81 ~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~ 160 (254)
+..++.|..+++..+++.++.+..++.-|+.+++++.+++|+... ++++.++++.|++++...+ +
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~D-N-------- 128 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYAD-N-------- 128 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEecc-c--------
Confidence 456789999999999999999999999999999999999999986 9999999999999886322 1
Q ss_pred CccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041310 161 KPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKD 207 (254)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~ 207 (254)
...+.+.|+..+++|+..-|+|-++.|+...+
T Consensus 129 ---------------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn 160 (290)
T KOG4314|consen 129 ---------------EHADEIIGIACAVGSAFMAALYKVLFKMFIGN 160 (290)
T ss_pred ---------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12345789999999999999999999887643
No 46
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.82 E-value=0.0016 Score=58.89 Aligned_cols=178 Identities=13% Similarity=0.096 Sum_probs=114.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HHHhhcCC---CCCCCHHHHHHHHHHHHH
Q 041310 3 AYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPF-AYVLERKH---RPKLSFAVMAKIFVLALF 78 (254)
Q Consensus 3 ~~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~~ 78 (254)
-..+++..++++++||+.++-.|...+-+...+..+ -.+++.++.... .....+.. ..+.+.+.+....+.|++
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~v--~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~ 82 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWSV--GGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL 82 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccccCCCchhHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH
Confidence 345899999999999999999998432222233221 111222222211 11111110 113455677777777777
Q ss_pred HHHHHHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHHHccccc---cccccCCCchhHHHHHHHHhHHHHhhhccccc
Q 041310 79 GATIHLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFLLGMEKV---KITSGRGGAKVLGTIVCIGGSLIFTFWKRGCL 154 (254)
Q Consensus 79 ~~~l~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~~~~e~~---~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~ 154 (254)
- .+.+..++.++++.+++.+..+ ..+.-+...++..++++|-. +..+ .....+|+++.++|+.+........
T Consensus 83 W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~k- 158 (345)
T PRK13499 83 W-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQLK- 158 (345)
T ss_pred H-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhhc-
Confidence 4 6889999999999999998876 66888999999999998754 3221 1136788999999999887421100
Q ss_pred ccCccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHH
Q 041310 155 LKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWL 198 (254)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~ 198 (254)
++ ++ ++.+.++.+...|..+++.|.+.+++|.
T Consensus 159 -----~~----~~---~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 159 -----ER----KM---GIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred -----cc----cc---ccccccccchHhHHHHHHHHHHHHHHHH
Confidence 00 00 0000123566799999999999999999
No 47
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0046 Score=54.71 Aligned_cols=191 Identities=14% Similarity=0.130 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHH----HHHHHHhc-CCChHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310 11 ILVQFAYGGSNI----LVKISLEK-GLNHLVFV-VYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL 84 (254)
Q Consensus 11 i~a~~~wg~~~v----~~K~~~~~-~~~p~~~~-~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~ 84 (254)
+.+++.++.+.. .-|.++.. +.|...++ .++.+...+++...- +.+--..++.+++..+...-..++. .+..
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk-~~~lv~~~~l~~~~~kk~~P~~~lf-~~~i 91 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLK-RLGLVNFRPLDLRTAKKWFPVSLLF-VGML 91 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH-HhceeecCCcChHHHHHHccHHHHH-HHHH
Confidence 455566665554 44666654 34433332 367776665555432 2222223456666666555555553 4455
Q ss_pred HHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccc
Q 041310 85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLI 164 (254)
Q Consensus 85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~ 164 (254)
..-..+++|.++..-.++-+..|+++++....++|.|++.+ .+.+....++|.......+
T Consensus 92 ~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~d-------------- 151 (314)
T KOG1444|consen 92 FTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFTD-------------- 151 (314)
T ss_pred HHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhcccc--------------
Confidence 55677999999999999999999999999999999888886 7788887777777654211
Q ss_pred cccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-CcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310 165 HIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYP-APLSLNALICFFASLQSSFVALFLGR 235 (254)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (254)
..-...|..+++...++-+.+.+..||..+... ..+.+.++..+.....+.....++|+
T Consensus 152 ------------~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge 211 (314)
T KOG1444|consen 152 ------------LSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGE 211 (314)
T ss_pred ------------ceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcc
Confidence 011234899999999999999999998765422 14677888888888888777777765
No 48
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.73 E-value=0.0006 Score=59.91 Aligned_cols=182 Identities=15% Similarity=0.191 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHHHHhhhcc
Q 041310 20 SNILVKISLEKGLN-HLVFVVYRHVLAMVLLGPFAYVLERKH---RPKLSFAVMA-KIFVLALFGATIHLNVYYTGFSYV 94 (254)
Q Consensus 20 ~~v~~K~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~---~~~~~~~~~~-~~~~~g~~~~~l~~~l~~~~l~~~ 94 (254)
+|...+.-.+ ++ |+.++.....+-.+.-.......+++. +.+.+|++.. +.+-.|+.. ++.-++.+++++|+
T Consensus 32 tf~~~~~~~~--f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yV 108 (349)
T KOG1443|consen 32 TFYFKWLTKN--FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYV 108 (349)
T ss_pred HHHhhhhhcC--cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeee
Confidence 4444444322 33 667766555443332222222222221 1245666554 455666664 77888999999999
Q ss_pred chhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccC
Q 041310 95 SLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRH 174 (254)
Q Consensus 95 ~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (254)
+.+.-+..=++.++|+.+++..+--||+++. ...-..+..+|+.+.+ ++.
T Consensus 109 tlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~Ks----------------------- 158 (349)
T KOG1443|consen 109 TLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKS----------------------- 158 (349)
T ss_pred eeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-ecc-----------------------
Confidence 9999999999999999999999999999985 5566666666777665 221
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC----CcchHHHHHHHHHHHHHHHHHHHhcCC
Q 041310 175 HGNENWFKGSALILTSHISWSAWLILLATVSKDYP----APLSLNALICFFASLQSSFVALFLGRN 236 (254)
Q Consensus 175 ~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (254)
..-...|-.+.++|.++-++-=.+.+.+.++.| .|+.......-.-.+.++|..+.+|++
T Consensus 159 --Tqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~ 222 (349)
T KOG1443|consen 159 --TQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL 222 (349)
T ss_pred --cceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence 112356777777766665553334444444433 255555555555566777888888884
No 49
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.69 E-value=0.001 Score=57.40 Aligned_cols=106 Identities=11% Similarity=0.138 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Q 041310 8 VAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPK-LSFAVMAKIFVLALFGATIHLNV 86 (254)
Q Consensus 8 l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~l~~~l 86 (254)
...+.+++.|+.+.+..|...++ ++........ .......+..........+. ...++|......|++ +.+++.+
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l 224 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALKNT--DLAGFCLETL-SLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLA 224 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHH-HHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHH
Confidence 35678899999999999986533 2222222111 11111111111111111111 223578888888887 5789999
Q ss_pred HHHhhhccchhhHhhhcchhHHHHHHHHHHH
Q 041310 87 YYTGFSYVSLTVATALSNVIPSFTFLLAFLL 117 (254)
Q Consensus 87 ~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~ 117 (254)
++.++++.+++.++.+.|++|++..+++.+.
T Consensus 225 ~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 225 FVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998764
No 50
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.67 E-value=0.0017 Score=57.72 Aligned_cols=135 Identities=10% Similarity=0.195 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHH--hhcCC-CC---CCCHHHHHHHHHHHHH
Q 041310 6 PYVAMILVQFAYGGSNILVKISLEK-GLNHLVFVVYRHVLAMVLLGPFAYV--LERKH-RP---KLSFAVMAKIFVLALF 78 (254)
Q Consensus 6 ~~l~li~a~~~wg~~~v~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~--~~~~~-~~---~~~~~~~~~~~~~g~~ 78 (254)
|+.+++.+.++-|...+..+...++ +.++.+..++-..++.+...+.... .+... .. ....+.+...+...+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 8899999999999999999998854 7899999999999998887776655 21110 00 0112233445555655
Q ss_pred HHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 79 GATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 79 ~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
+ ...+.+.+.-.++.++...+++..+--+.+.+++.+++++++++. +|.|+++.+.|..+=.
T Consensus 235 ~-~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 235 G-ALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS 296 (303)
T ss_pred H-HHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence 5 566777777889999999999999999999999999999999997 9999999999998765
No 51
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.62 E-value=0.0061 Score=53.22 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhc-chhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHH
Q 041310 66 FAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALS-NVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSL 144 (254)
Q Consensus 66 ~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~-~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 144 (254)
.+.+...+..|++- .+.+...+.+.++.+++++..+. ..+=+...+++.++++|.-+.+++. .-.+++++.++|+.
T Consensus 42 ~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~--~G~~Al~liiiGv~ 118 (269)
T PF06800_consen 42 GTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKI--IGFLALVLIIIGVI 118 (269)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHHHHHH
Confidence 37777778888875 78999999999999999999886 4666788999999999988876321 22457777888888
Q ss_pred HHhhhcccccccCccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 041310 145 IFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLAT 203 (254)
Q Consensus 145 li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~ 203 (254)
+.+..+++. + ..++..+...|....+.+.+.|-.|.+..|-
T Consensus 119 lts~~~~~~--------------~----~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 119 LTSYQDKKS--------------D----KSSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred Hhccccccc--------------c----ccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 776332110 0 0012344567999999999999999999754
No 52
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.50 E-value=0.0057 Score=53.51 Aligned_cols=127 Identities=14% Similarity=0.175 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 041310 11 ILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKH--RPKLSFAVMAKIFVLALFGATIHLNVYY 88 (254)
Q Consensus 11 i~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~l~~~l~~ 88 (254)
+..++.||.++..=|.. ++|+.+=...-...-.+..+.......-.. ..+.+.+.+..+...|... +++-.+|.
T Consensus 154 l~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf~ 229 (293)
T COG2962 154 LALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLFA 229 (293)
T ss_pred HHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHHH
Confidence 45677888888888875 277766655555555554444444433221 1113456777788889885 79999999
Q ss_pred HhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 89 TGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 89 ~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
.|-++.+.+.-+++.|..|.+..+++.++++|+++.. +..+-+..-+|+.+..
T Consensus 230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~ 282 (293)
T COG2962 230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS 282 (293)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 9999999999988876
No 53
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.30 E-value=0.0025 Score=55.59 Aligned_cols=114 Identities=12% Similarity=0.037 Sum_probs=81.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIH 83 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~ 83 (254)
.|+++.++.+.+.|..+.+..|.. + +||.+...-..+--.+.-+++....+++. .+++.+ +-..-|++- ...
T Consensus 137 ~kgi~~Ll~stigy~~Y~~~~~~~--~-~~~~~~~lPqaiGm~i~a~i~~~~~~~~~---~~k~~~-~nil~G~~w-~ig 208 (269)
T PF06800_consen 137 KKGILALLISTIGYWIYSVIPKAF--H-VSGWSAFLPQAIGMLIGAFIFNLFSKKPF---FEKKSW-KNILTGLIW-GIG 208 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc--C-CChhHhHHHHHHHHHHHHHHHhhcccccc---cccchH-HhhHHHHHH-HHH
Confidence 568999999999999999998874 3 78877766443322222222222222111 122233 334567764 678
Q ss_pred HHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHcccccccc
Q 041310 84 LNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKIT 125 (254)
Q Consensus 84 ~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~ 125 (254)
+.+++.+.+..+.+.+-.+..+.++...+-+.+++||+=++|
T Consensus 209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k 250 (269)
T PF06800_consen 209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK 250 (269)
T ss_pred HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence 889999999999999999999999999999999999997776
No 54
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.28 E-value=0.0061 Score=46.03 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHH
Q 041310 80 ATIHLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIF 146 (254)
Q Consensus 80 ~~l~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 146 (254)
..+++.+...++|+.|.+.+=.+ ...--+.+++++.++++|++++. +++|+.+.++|++.+
T Consensus 45 ~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 45 VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 45788899999999999987644 66778899999999999999997 999999999999875
No 55
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.24 E-value=0.00072 Score=51.28 Aligned_cols=110 Identities=16% Similarity=0.256 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041310 11 ILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTG 90 (254)
Q Consensus 11 i~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~ 90 (254)
++..++||.+.+++|..... .++-.-.. |..-.... .. + +++... .+.-.-.....|++.
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~-----Ll--~------n~~y~i-----pf~lNq~GSv~f~~~ 61 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF-----LL--L------NPKYII-----PFLLNQSGSVLFFLL 61 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH-----HH--H------hHHHHH-----HHHHHHHHHHHHHHH
Confidence 45688999999999998765 55443331 32111111 01 0 112222 222123456788999
Q ss_pred hhccchhhHhhhc-chhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHH
Q 041310 91 FSYVSLTVATALS-NVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIF 146 (254)
Q Consensus 91 l~~~~~~~a~~l~-~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 146 (254)
+...+.+.+..+. ++.=+++++.++++.+|..+++ .++|+++.++|+.++
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 9999999999886 6677888888887777777775 899999999998764
No 56
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.13 E-value=0.0023 Score=49.18 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 77 LFGATIHLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 77 ~~~~~l~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
+.....++.++..++++.+.+.+=.+ ...--+.+++++.++++|+++.. +++|+.+.++|++.+-
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence 33446788999999999999998766 56888899999999999999997 9999999999998875
No 57
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.09 E-value=0.0034 Score=47.54 Aligned_cols=65 Identities=15% Similarity=0.267 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 77 LFGATIHLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 77 ~~~~~l~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
+.+..+++.++..++++.|.+.+=.+ ...--+.++++++++++|++++. +++|+.+.++|++.+-
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 34446788888999999999988766 66778888999999999999997 9999999999999885
No 58
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.004 Score=46.60 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhhccchhhHh-hhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 79 GATIHLNVYYTGFSYVSLTVAT-ALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 79 ~~~l~~~l~~~~l~~~~~~~a~-~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
+...++.+.-.++|++|.+.+= +....--+.+++.++++++|+++.. +++|+.+.++|++.+-
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 3457888999999999999875 4477888999999999999999997 9999999999999874
No 59
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.0045 Score=53.78 Aligned_cols=172 Identities=15% Similarity=0.088 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC----CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhH
Q 041310 34 HLVFVVYRHVLAMVLLGPFAYVLERK----HRP--KLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIP 107 (254)
Q Consensus 34 p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~--~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~P 107 (254)
|..+...+++....+...+.....+- ..| +++.+......-+.+.- .+.-..-.+.++|.+++---+=-++.-
T Consensus 61 plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 61 PLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchhh
Confidence 78888889888877776665443221 112 23333222222222221 122233356677777765555566778
Q ss_pred HHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCCCCCchHHHHHHH
Q 041310 108 SFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALI 187 (254)
Q Consensus 108 v~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 187 (254)
+|+.+++.+++|+|-+.. -..+..+.+.|-.+=+ | +|.. .+.-...|.++.
T Consensus 140 vFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~lGv-----------d-----------qE~~-~~~ls~~GvifG 190 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGLGV-----------D-----------QEGS-TGTLSWIGVIFG 190 (347)
T ss_pred hHHHHhHHhhcccccccc------cceeehhheehheecc-----------c-----------cccc-cCccchhhhHHH
Confidence 899999999999998885 3334333333332211 1 1111 122346899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCC-cchHHHHHHHHHHHHHHHHHHHhcC
Q 041310 188 LTSHISWSAWLILLATVSKDYPA-PLSLNALICFFASLQSSFVALFLGR 235 (254)
Q Consensus 188 l~aa~~~A~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (254)
+.|.++-|+..+..||......+ .+.++++..+.+.+.++|...+.+.
T Consensus 191 VlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge 239 (347)
T KOG1442|consen 191 VLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGE 239 (347)
T ss_pred HHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcch
Confidence 99999999999999876544332 4678999999999999999887765
No 60
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.87 E-value=0.032 Score=43.91 Aligned_cols=127 Identities=14% Similarity=0.105 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 041310 10 MILVQFAYGGSNILVKISLEKGL-NHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYY 88 (254)
Q Consensus 10 li~a~~~wg~~~v~~K~~~~~~~-~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~ 88 (254)
.+.+-..-+....+.-+..+. . +|..-++.-+..+.+++..+....+++..++.+...|. ...-|+++ .....+..
T Consensus 6 a~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w-~~lGG~lG-~~~V~~~~ 82 (138)
T PF04657_consen 6 ALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWW-AYLGGLLG-VFFVLSNI 82 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChH-HhccHHHH-HHHHHHHH
Confidence 334444444444443334344 4 49999999999999888887776544322222111222 23356676 56677788
Q ss_pred HhhhccchhhHhhhcc-hhHHHHHHHHHH----HccccccccccCCCchhHHHHHHHHhHHH
Q 041310 89 TGFSYVSLTVATALSN-VIPSFTFLLAFL----LGMEKVKITSGRGGAKVLGTIVCIGGSLI 145 (254)
Q Consensus 89 ~~l~~~~~~~a~~l~~-~~Pv~~~lls~~----~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 145 (254)
+..++.+++++..+.- -+-+...++..+ .-+++++++ |.+|+++.++|+.+
T Consensus 83 ~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 83 ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL 138 (138)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence 8999999998877644 466666777764 245666665 99999999999863
No 61
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.85 E-value=0.0078 Score=45.16 Aligned_cols=64 Identities=9% Similarity=0.098 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 78 FGATIHLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 78 ~~~~l~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
.+...++.+...++|+.|.+.+=.+ ...--+.+.+++.++++|++++. +++|+.+.++|++.+-
T Consensus 37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 3346788899999999999987544 66888899999999999999997 9999999999999874
No 62
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.013 Score=49.96 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcc
Q 041310 72 IFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKR 151 (254)
Q Consensus 72 ~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g 151 (254)
...++.- ..++++-.+.+++|.+=-...+=-+.-|+=+.+++..+.|++-+|+ +....+..+.|+.+.. ++.
T Consensus 88 YaAcs~s-YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~ 159 (337)
T KOG1580|consen 88 YAACSAS-YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKE 159 (337)
T ss_pred HHHHHHH-HHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccc
Confidence 3444443 3567777888999998888878788899999999999999999998 9999999999999886 432
Q ss_pred cccccCccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-cchHHHHHHHHHHHHHHHHH
Q 041310 152 GCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPA-PLSLNALICFFASLQSSFVA 230 (254)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 230 (254)
+- . .+.+++....|.++.++|-..=..-...++|+.+++.+ ..+++.+.++-+.+.+..-.
T Consensus 160 ~K--v----------------~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~ 221 (337)
T KOG1580|consen 160 NK--V----------------GGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGL 221 (337)
T ss_pred cc--c----------------CCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhh
Confidence 11 0 11234556789999999988878888888888776643 34566666666665554433
Q ss_pred HH
Q 041310 231 LF 232 (254)
Q Consensus 231 ~~ 232 (254)
++
T Consensus 222 lf 223 (337)
T KOG1580|consen 222 LF 223 (337)
T ss_pred ee
Confidence 33
No 63
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.66 E-value=0.019 Score=51.96 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=107.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEKG---LNHLVFVVYRHVLAMVLLGPFAYVLERK---HRPKLSFAVMAKIFVLAL 77 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~---~~p~~~~~~R~~~a~l~l~~~~~~~~~~---~~~~~~~~~~~~~~~~g~ 77 (254)
..|.++.++++++||.+.+..|.-.+++ +|--.+-.+-.++..+++.|......+- +.+-.+..++...+..++
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l 325 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL 325 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence 4688999999999999999999876652 5655666666777778888766554332 222234456666788889
Q ss_pred HHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhh
Q 041310 78 FGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFW 149 (254)
Q Consensus 78 ~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~ 149 (254)
+++.+.-++|..|+-.|++-.+++=+++..-..++.-.++-+.++++. .++|.+..++|-+.+...
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheecc
Confidence 999999999999999999998887777655556667777778888886 999999999999887643
No 64
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.65 E-value=0.0076 Score=53.92 Aligned_cols=137 Identities=15% Similarity=0.242 Sum_probs=104.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHH-HHHHHhhcCCC----C-CCCHHHHHHHH
Q 041310 3 AYSPYVAMILVQFAYGGSNILVKISLE---KGLNHLVFVVYRHVLAMVLLG-PFAYVLERKHR----P-KLSFAVMAKIF 73 (254)
Q Consensus 3 ~~~~~l~li~a~~~wg~~~v~~K~~~~---~~~~p~~~~~~R~~~a~l~l~-~~~~~~~~~~~----~-~~~~~~~~~~~ 73 (254)
++.|.+....+.+..+.-.+..|.... +.+|++.+...-.-++...++ |+....+.... . ..+.. .....
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL 239 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence 356888999999999999999999983 358999999999999998888 87665443221 1 12222 33344
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 74 VLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 74 ~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
+..++. .+.+..-|..+.++++-.-++....==+.+.+.++++++|++++. +..|.++++.|+.+=.
T Consensus 240 ~~sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 240 LNSVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence 444554 456777788999999888887776655666777999999999997 9999999999999754
No 65
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.62 E-value=0.0013 Score=56.86 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310 5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL 84 (254)
Q Consensus 5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~ 84 (254)
++....+.+++.-+...+..|..-.+ .+....+.+-..++.+.-++.....+.-.+| -.+||+..+..+|+++ .++|
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk~-~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP-~cgkdr~l~~~lGvfg-figQ 267 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGKN-AHAIMSVSYFSLITLVVSLIGCASIGAVQLP-HCGKDRWLFVNLGVFG-FIGQ 267 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhcc-ccEEEEehHHHHHHHHHHHHHHhhccceecC-ccccceEEEEEehhhh-hHHH
Confidence 45666777777777778888776444 6666556665666665555544333332333 4567888888899998 7899
Q ss_pred HHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 85 NVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 85 ~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
.+..-|+|.=-++..++..++.-+++.+.-.++++|-++++ .|.|+++.+...+...
T Consensus 268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVA 324 (346)
T ss_pred HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHH
Confidence 99999999999999999999999999999999999999997 8999888877766655
No 66
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.62 E-value=0.017 Score=51.45 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHH-HHHHHHHHHHHHH
Q 041310 5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMA-KIFVLALFGATIH 83 (254)
Q Consensus 5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~l~ 83 (254)
-|....+.++++-+.+....|....+ .+. ...| ++ +..++.+. .....|++...+.
T Consensus 7 iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~~----------------~~---~~~~~~l~~~~W~~G~~~~~~g 63 (300)
T PF05653_consen 7 IGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSLR----------------AG---SGGRSYLRRPLWWIGLLLMVLG 63 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cccc----------------cc---chhhHHHhhHHHHHHHHHHhcc
Confidence 46777788888888888888876443 111 0000 00 00011111 1223444444566
Q ss_pred HHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310 84 LNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF 148 (254)
Q Consensus 84 ~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 148 (254)
..+.+.++.+.|.+..+.+..+.-++..+++.+++|||++++ ++.|.++++.|..+++.
T Consensus 64 ~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 64 EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI 122 (300)
T ss_pred hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE
Confidence 778899999999999999999999999999999999999998 99999999999988763
No 67
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.23 Score=43.98 Aligned_cols=170 Identities=18% Similarity=0.173 Sum_probs=115.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcc--hhHHHH
Q 041310 33 NHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSN--VIPSFT 110 (254)
Q Consensus 33 ~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~--~~Pv~~ 110 (254)
+|..+.+..-+.+.++-.... ..++.. ...++.|..+...++.+ .+...|-+.+++|.+=-.-.+-=+ +.|++
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l--~~~k~~-~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm- 124 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAML--KWWKKE-LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVM- 124 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHH--hccccc-CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHH-
Confidence 466667777677666553332 222211 22335566777888887 577789999999986554444433 45655
Q ss_pred HHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCCCCCchHHHHHHHHHH
Q 041310 111 FLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTS 190 (254)
Q Consensus 111 ~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a 190 (254)
+++.++.|.|.+.+ +.+...+.-.|+.+....+... +..+.+.++...|..+....
T Consensus 125 -lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-----------------s~~~~g~~ns~~G~~Ll~~~ 180 (327)
T KOG1581|consen 125 -LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-----------------SSSKSGRENSPIGILLLFGY 180 (327)
T ss_pred -HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-----------------CccccCCCCchHhHHHHHHH
Confidence 56889999999997 8888888888888776432110 01223445678899999999
Q ss_pred HHHHHHHHHHHHHHhhhCC-CcchHHHHHHHHHHHHHHHHHH
Q 041310 191 HISWSAWLILLATVSKDYP-APLSLNALICFFASLQSSFVAL 231 (254)
Q Consensus 191 a~~~A~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 231 (254)
-+.=+.-+..++++.+++. ++..+++..++++++.-.....
T Consensus 181 L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li 222 (327)
T KOG1581|consen 181 LLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLI 222 (327)
T ss_pred HHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhh
Confidence 8888888889998887643 2577888888888887776643
No 68
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.50 E-value=0.0081 Score=43.95 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhccchhhHh-hhcchhHHHHHHHHHHHccccccccccCCCchhHHHHH
Q 041310 79 GATIHLNVYYTGFSYVSLTVAT-ALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIV 138 (254)
Q Consensus 79 ~~~l~~~l~~~~l~~~~~~~a~-~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l 138 (254)
....++.++..++++.+.+.+= +...+-.+.+.+.+.++++|+++.+ |++|+.+
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 3467888999999999999985 4567899999999999999999998 8988875
No 69
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.31 E-value=0.00039 Score=59.34 Aligned_cols=172 Identities=13% Similarity=0.190 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 041310 5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHL 84 (254)
Q Consensus 5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~ 84 (254)
..++..++-++.||+...+.... |=+|.+-.-.- .+++++.....++. ..|..+.+.+...+.-|.+- ...|
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGt-T~GALifaiiv~~~---~~p~~T~~~~iv~~isG~~W-s~GQ 73 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKF---GGKPYQQTLGT-TLGALIFAIIVFLF---VSPELTLTIFIVGFISGAFW-SFGQ 73 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeec---CCChhHhhhhc-cHHHHHHHHHHhee---ecCccchhhHHHHHHhhhHh-hhhh
Confidence 34677888999999987765543 23454443222 23333333332222 23556777777777777764 6788
Q ss_pred HHHHHhhhccchhhHhhhc-chhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCcc
Q 041310 85 NVYYTGFSYVSLTVATALS-NVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPL 163 (254)
Q Consensus 85 ~l~~~~l~~~~~~~a~~l~-~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~ 163 (254)
...+-++++.+++++..+. .++-+-+.+++.+.+||-.+..+. ....+++++.++|+.+.+..+++.
T Consensus 74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs~~~~~n---------- 141 (288)
T COG4975 74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTSKQDRNN---------- 141 (288)
T ss_pred hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEeeeecccc----------
Confidence 8999999999999999885 477788999999999998776410 011233444455555444221100
Q ss_pred ccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041310 164 IHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATV 204 (254)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~ 204 (254)
++ +++.++.-.|....+.|.+.|-.|.++.+..
T Consensus 142 -k~-------~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f 174 (288)
T COG4975 142 -KE-------EENPSNLKKGIVILLISTLGYVGYVVLFQLF 174 (288)
T ss_pred -cc-------ccChHhhhhheeeeeeeccceeeeEeeeccc
Confidence 01 1123345678888888988888888877543
No 70
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.62 E-value=0.71 Score=41.94 Aligned_cols=142 Identities=12% Similarity=0.055 Sum_probs=85.6
Q ss_pred chhHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHH-HHHHHh-hc-CCCC-----CCC
Q 041310 4 YSPYVAMILVQFAYGGSN-------ILVKISLEKGLNHLVFVVYRHV---LAMVLLG-PFAYVL-ER-KHRP-----KLS 65 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~-------v~~K~~~~~~~~p~~~~~~R~~---~a~l~l~-~~~~~~-~~-~~~~-----~~~ 65 (254)
.|+.+..+++.+..+... +..+...+.|.++.....-.+. ++..+.- ++...+ +| +..+ +.+
T Consensus 173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~ 252 (345)
T PRK13499 173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLA 252 (345)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcccc
Confidence 578899999999888888 6666655556887776666555 4433222 222221 12 1110 112
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhhhccchhhHhh---hcchhH-HHHHHHHHHHccccccccccCCCchhHHHH
Q 041310 66 FAVMAKI----FVLALFGATIHLNVYYTGFSYVSLTVATA---LSNVIP-SFTFLLAFLLGMEKVKITSGRGGAKVLGTI 137 (254)
Q Consensus 66 ~~~~~~~----~~~g~~~~~l~~~l~~~~l~~~~~~~a~~---l~~~~P-v~~~lls~~~~~e~~~~~~~~~~~~~~g~~ 137 (254)
++.+.+- .+-|++- .+.+.++..+-+..+.+.+.. +....+ ++..+-+. ++||+=+..|+..+..++|.+
T Consensus 253 ~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~v 330 (345)
T PRK13499 253 KPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCV 330 (345)
T ss_pred chhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHH
Confidence 1222222 4445553 466777888888776665555 553444 55555555 699987744445556788999
Q ss_pred HHHHhHHHHh
Q 041310 138 VCIGGSLIFT 147 (254)
Q Consensus 138 l~~~Gv~li~ 147 (254)
+.++|..++.
T Consensus 331 liI~g~~lig 340 (345)
T PRK13499 331 VIILAANIVG 340 (345)
T ss_pred HHHHHHHHHh
Confidence 9999988876
No 71
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.21 E-value=0.1 Score=43.98 Aligned_cols=58 Identities=16% Similarity=0.014 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHH
Q 041310 81 TIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSL 144 (254)
Q Consensus 81 ~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 144 (254)
...+.+..+-+++.++..-+....+.++++.+++.++++|+++.. ++.|+.+.+.|+.
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 556678889999999999999999999999999999999999997 9999999988864
No 72
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.76 E-value=0.92 Score=36.17 Aligned_cols=140 Identities=12% Similarity=0.018 Sum_probs=78.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 041310 3 AYSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATI 82 (254)
Q Consensus 3 ~~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l 82 (254)
.+...+..+.+..+-.....+.-+..+.-=+|+.-.+..+..+..++..+....+++......++.-.+...-|+++ ..
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lG-a~ 81 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLG-AI 81 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchh-hh
Confidence 33444455555555444444444444441359999999999998888887776333221111112112233345555 34
Q ss_pred HHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHH-HccccccccccCCCchhHHHHHHHHhHHHH
Q 041310 83 HLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFL-LGMEKVKITSGRGGAKVLGTIVCIGGSLIF 146 (254)
Q Consensus 83 ~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~-~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 146 (254)
+-........+.+++....+ ..-+-++..++..+ +++++ +|.++..+++|+++.++|+.++
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVP---KRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence 44445566677777665544 55566666666664 33322 1234456999999999995544
No 73
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.60 E-value=0.55 Score=41.62 Aligned_cols=137 Identities=12% Similarity=0.140 Sum_probs=101.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----CCCHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEK-GLNHLVFVVYRHVLAMVLLGPFAYVLERKHRP-----KLSFAVMAKIFVLAL 77 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~ 77 (254)
..|+.++..-.+.=|.+....+..... .+++..+.+.-.++.++.-.......+. .++ +..++-+.-+++.+.
T Consensus 171 ~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~-~~~av~F~~~hp~~~~Di~l~s~ 249 (327)
T KOG1581|consen 171 PIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGH-LLPAVSFIKEHPDVAFDILLYST 249 (327)
T ss_pred hHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCC-CchHHHHHHcChhHHHHHHHHHH
Confidence 346666666666666666666655543 6899999999888888776665333222 112 223344556777888
Q ss_pred HHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310 78 FGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF 148 (254)
Q Consensus 78 ~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 148 (254)
++ +..|.+-|+-++.-++-.-+.++.+-=++..+++.+.++.++++. +|.|..+.|.|+.+=..
T Consensus 250 ~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 250 CG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEIL 313 (327)
T ss_pred hh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHHH
Confidence 87 678888888888888888888888888999999999999999998 99999999999887543
No 74
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.59 E-value=0.49 Score=40.28 Aligned_cols=124 Identities=11% Similarity=0.096 Sum_probs=90.5
Q ss_pred HHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccc
Q 041310 87 YYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHI 166 (254)
Q Consensus 87 ~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~ 166 (254)
---+++|.+...-+++-++..+.++..-..+++.|++.- +....++-+..-+.-...+.
T Consensus 85 ~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w~D~--------------- 143 (309)
T COG5070 85 SSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATWGDQ--------------- 143 (309)
T ss_pred cccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhccchh---------------
Confidence 346899999999999999999999999999999999886 66666665555443331110
Q ss_pred cccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh--CCCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 041310 167 YDTDQLRHHGNENWFKGSALILTSHISWSAWLILLATVSKD--YPAPLSLNALICFFASLQSSFVALFLGRN 236 (254)
Q Consensus 167 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (254)
|+. .........|-+|.....+.-|.|....|+..|- .. .+..+++..+.+.-.++.+.+++|++
T Consensus 144 --q~~--~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edw 210 (309)
T COG5070 144 --QAS--AFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDW 210 (309)
T ss_pred --hHH--HHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccC
Confidence 000 0012234568889999999999999888886552 23 36778999999998888889888874
No 75
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.18 E-value=0.47 Score=40.69 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----CCCHHHHHHHHHHHHHH
Q 041310 6 PYVAMILVQFAYGGSNILVKISLEK-GLNHLVFVVYRHVLAMVLLGPFAYVLERKHRP-----KLSFAVMAKIFVLALFG 79 (254)
Q Consensus 6 ~~l~li~a~~~wg~~~v~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~ 79 (254)
|.++++++...=|.+.......-.+ .-+...+...-.+-+.+.+..-.++.+ ..|. ......|..+.++++.+
T Consensus 173 GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTG-ElweF~yF~~RhP~~~~~l~l~ai~s 251 (337)
T KOG1580|consen 173 GELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTG-ELWEFFYFVQRHPYVFWDLTLLAIAS 251 (337)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehh-hHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5667777777777777666554333 123344555555555554443332221 1110 00113455667777776
Q ss_pred HHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 80 ATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 80 ~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
.+.+.+.|.-+.+-++-.-+++..+--.|+.+.|.++++.+++.| ||+|..+.|.|+..=+
T Consensus 252 -~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 252 -CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV 312 (337)
T ss_pred -HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence 678888899999999999999999999999999999999999998 9999999999988654
No 76
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=94.07 E-value=0.058 Score=47.07 Aligned_cols=179 Identities=13% Similarity=0.082 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhhHhhhcchhHHHHHHH
Q 041310 35 LVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFSY-VSLTVATALSNVIPSFTFLL 113 (254)
Q Consensus 35 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~-~~~~~a~~l~~~~Pv~~~ll 113 (254)
..+++.+|++-+.--++..--... .+|+.+.|++.....+ + ...+.+-.+++++ ++.-.--++-+-.++..+.+
T Consensus 34 NLITFaqFlFia~eGlif~skf~~-~k~kiplk~Y~i~V~m--F--F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~ 108 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTSKFFT-VKPKIPLKDYAITVAM--F--FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMIL 108 (330)
T ss_pred eehHHHHHHHHHHhceeeeccccc-cCCCCchhhhheehhe--e--eeeeeeccceeeecccceEEEEEecCcHHHHHHH
Confidence 456677777766554443211111 2245665665433222 2 3456677788887 46666667777889999999
Q ss_pred HHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccccccCCCCCchHHHHHHHHHHHHH
Q 041310 114 AFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHIS 193 (254)
Q Consensus 114 s~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~ 193 (254)
++++.++|-+.+ |..+.++.-+|+++..+.+.+..+.- .++.+++++ ......+..|..+...+-+.
T Consensus 109 g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~~--~~~l~~~~~-----~~~~~~w~iGi~lL~~al~~ 175 (330)
T KOG1583|consen 109 GWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRSK--LSGLDSGSA-----QSDFFWWLIGIALLVFALLL 175 (330)
T ss_pred HHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhhh--hcccccCcc-----cccchHHHHHHHHHHHHHHH
Confidence 999999999998 99999999999998875432211100 111211111 11233467899888888888
Q ss_pred HHHHHHHHHHHhhhCCC-cchHHHHHHHHHHHHHHHHHHHhcC
Q 041310 194 WSAWLILLATVSKDYPA-PLSLNALICFFASLQSSFVALFLGR 235 (254)
Q Consensus 194 ~A~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (254)
-|.-.+.+++.-|++.. +-+..++.=+ +.+|.-++.++
T Consensus 176 sa~mgiyqE~~Y~kyGKh~~EalFytH~----LsLP~Flf~~~ 214 (330)
T KOG1583|consen 176 SAYMGIYQETTYQKYGKHWKEALFYTHF----LSLPLFLFMGD 214 (330)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHH----hccchHHHhcc
Confidence 88888888877666532 3344554432 34444444444
No 77
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=92.99 E-value=2.8 Score=36.44 Aligned_cols=222 Identities=11% Similarity=0.033 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041310 6 PYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLN 85 (254)
Q Consensus 6 ~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~ 85 (254)
|++..+++++.+|++++-+|.. +. -|++.+-.+-..-..+.-+++....+ .|+. .....+-|.+- ...+.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~~i~~~g~~v~~~~~---~p~f----~p~amlgG~lW-~~gN~ 70 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCSGIFLVGLVVNLILG---FPPF----YPWAMLGGALW-ATGNI 70 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHHHHHHHHHHHHHHhcC---CCcc----eeHHHhhhhhh-hcCce
Confidence 4678899999999999999975 34 67777666655544444444433321 2222 12223334443 45566
Q ss_pred HHHHhhhccchhhHhhhcch-hHHHHHHHHHH-HccccccccccCCCchhHHHHHHHHhHHHHhhhcccccc--cCccCC
Q 041310 86 VYYTGFSYVSLTVATALSNV-IPSFTFLLAFL-LGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLL--KGFVQK 161 (254)
Q Consensus 86 l~~~~l~~~~~~~a~~l~~~-~Pv~~~lls~~-~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~--~~~~~~ 161 (254)
+-...++..+.+.+-.+=++ +-+.....+.+ +++++...- .......+|+++.++|..+..+-+.+... ...++.
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~ 149 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEET 149 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCcccccccc
Confidence 66778888888888877554 44555555544 444333221 11234778888888888877543221100 000011
Q ss_pred cccccc-ccc-cc-----cCCC------CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-------Cc----chHHHH
Q 041310 162 PLIHIY-DTD-QL-----RHHG------NENWFKGSALILTSHISWSAWLILLATVSKDYP-------AP----LSLNAL 217 (254)
Q Consensus 162 ~~~~~~-~~~-~~-----~~~~------~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~-------~~----~~~~~~ 217 (254)
+...++ ++. ++ .++. ..+...|..+++.+.+.|+...+=..-..++.+ .+ ++...-
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~G 229 (254)
T PF07857_consen 150 PLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSG 229 (254)
T ss_pred ccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhh
Confidence 111110 000 10 0000 113578999999999999997765444333321 11 222333
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 041310 218 ICFFASLQSSFVALFLGRNPT 238 (254)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~ 238 (254)
.++.+++.++.+..+..+.|.
T Consensus 230 IfltSt~~F~~Y~~~~rn~P~ 250 (254)
T PF07857_consen 230 IFLTSTVYFVIYCIIKRNKPK 250 (254)
T ss_pred HHHHHHHHHHHHHHhhcCCCC
Confidence 456677777777776555443
No 78
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=92.17 E-value=0.55 Score=36.72 Aligned_cols=54 Identities=20% Similarity=0.129 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC------CCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 041310 183 GSALILTSHISWSAWLILLATVSKDY------PAPLSLNALICFFASLQSSFVALFLGRN 236 (254)
Q Consensus 183 G~~l~l~aa~~~A~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (254)
|.++++.|.++.+++.++.|+..++. .++..+..+....+.+.+.|...+.|.+
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~ 60 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGP 60 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56889999999999999999987662 2367788888999999999999988874
No 79
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.12 E-value=0.08 Score=47.11 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=81.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIH 83 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~ 83 (254)
..|.++.+.+.+.-|.+++.-|....+ ... ...| .+.... +.- ++ +....|++-..+.
T Consensus 20 ~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~~r--------------a~~gg~-~yl-~~--~~Ww~G~ltm~vG 77 (335)
T KOG2922|consen 20 IIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SGLR--------------AGEGGY-GYL-KE--PLWWAGMLTMIVG 77 (335)
T ss_pred eeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hccc--------------ccCCCc-chh-hh--HHHHHHHHHHHHH
Confidence 445566666777777777777765443 110 1111 011111 111 22 2334566655667
Q ss_pred HHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 84 LNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 84 ~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
...-|.+..+.|++..+.+..+.-+..++++..+++||++.. ..+|.+++++|-.+++
T Consensus 78 ei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 78 EIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIV 135 (335)
T ss_pred hHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEE
Confidence 778889999999999999999999999999999999999997 8999999999988877
No 80
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.43 E-value=3.5 Score=36.78 Aligned_cols=137 Identities=17% Similarity=0.210 Sum_probs=95.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcC-----CCC-CCCHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEK-GLNHLVFVVYRHVLAMVLLGPFAYVLERK-----HRP-KLSFAVMAKIFVLA 76 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~-----~~~-~~~~~~~~~~~~~g 76 (254)
.+||.++....+.=....+.+|+..+. +.+-..++.+-.+++.+.+.......+-. ..+ .....-+..+.+-+
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 357788888888888888888887765 47778888999999888777766543310 001 11223345566667
Q ss_pred HHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 77 LFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 77 ~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
+++. .-.++-++..+.+++...++....+-..+.+...+++++++++. ..+|+.+++.|-++=.
T Consensus 236 v~gf-~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 236 VMGF-GISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHH-HHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence 7764 44567777888888877777774455555555566677778875 9999999999988654
No 81
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=87.99 E-value=0.44 Score=35.38 Aligned_cols=42 Identities=26% Similarity=0.498 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310 192 ISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR 235 (254)
Q Consensus 192 ~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (254)
++|+.+.+..|+..++.+ +...+++++..+++ ..+.....++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 42 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGR 42 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcc
Confidence 478999999999999887 68999999999998 6666666655
No 82
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=87.00 E-value=5.2 Score=34.21 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=82.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhH
Q 041310 32 LNHLVFVVYRHVLAMVLLGPFAYVLERKHR----PKLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIP 107 (254)
Q Consensus 32 ~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~P 107 (254)
..-.+..++..+++..+++.+.+..+.+.. ...+.......+..|++.. .-.++--+-++-++++.-+.+..++-
T Consensus 183 f~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv-giSy~saWcvrVtSSTtySMvGALNK 261 (309)
T COG5070 183 FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV-GISYCSAWCVRVTSSTTYSMVGALNK 261 (309)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh-hhhhccceeEeehhhhHHHHHHHhhh
Confidence 556788899999999988888776543221 1234344556677777763 44567778888899999999988888
Q ss_pred HHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 108 SFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 108 v~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
.-.++.+.+++.|+.+.. ++..+.+++....+-.
T Consensus 262 lp~alaGlvffdap~nf~------si~sillGflsg~iYa 295 (309)
T COG5070 262 LPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYA 295 (309)
T ss_pred ChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHH
Confidence 888888999999999986 8999999987766544
No 83
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=86.92 E-value=16 Score=32.65 Aligned_cols=136 Identities=16% Similarity=0.165 Sum_probs=86.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------CC----CHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEKG----LNHLVFVVYRHVLAMVLLGPFAYVLERKHRP-------KL----SFAV 68 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~----~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-------~~----~~~~ 68 (254)
..|..+...+.++=|.-|.+++...++. -+|.....--.-.-.+.++|..+..++.... .. -.+.
T Consensus 163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 3477788888888888888888887751 2366655544444455556665554443211 11 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHH
Q 041310 69 MAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIF 146 (254)
Q Consensus 69 ~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 146 (254)
...+.+.|.+. ...-.+.+.-+..|++-..++..-.-=+-+.+++..+.+|+++.. .|.|..++..|+..=
T Consensus 243 ~g~i~l~g~la-F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLA-FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHH-HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence 33334444443 233345566666666655555555555777888999999999976 999999999999865
No 84
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=83.46 E-value=8.5 Score=33.91 Aligned_cols=191 Identities=10% Similarity=0.088 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHhc-CCCh--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041310 16 AYGGSNILVKISLEK-GLNH--LVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLNVYYTGFS 92 (254)
Q Consensus 16 ~wg~~~v~~K~~~~~-~~~p--~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~ 92 (254)
.+=.+...-...... |+.| +.++..++++-..+-+.-... .+..++..++| ....++.+- ...+++-..++.
T Consensus 54 ~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~-~~~k~r~iP~r---tY~~la~~t-~gtmGLsn~Slg 128 (367)
T KOG1582|consen 54 LYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQL-IQTKRRVIPWR---TYVILAFLT-VGTMGLSNGSLG 128 (367)
T ss_pred HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEe-ecccceecchh---HhhhhHhhh-hhccccCcCccc
Confidence 333444444444332 4664 456666666654332221111 01111122333 233333332 345555566666
Q ss_pred ccchhhHhhhcc--hhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhcccccccCccCCccccccccc
Q 041310 93 YVSLTVATALSN--VIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLKGFVQKPLIHIYDTD 170 (254)
Q Consensus 93 ~~~~~~a~~l~~--~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~ 170 (254)
|.+=-.-.++-. +.|+++ .+.++-+.|-.+. ...++.+-..|++...+.+.
T Consensus 129 YLNYPtQviFKccKliPVmi--ggifIqGkRY~v~------d~~aA~lm~lGli~FTLADs------------------- 181 (367)
T KOG1582|consen 129 YLNYPTQVIFKCCKLIPVMI--GGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLADS------------------- 181 (367)
T ss_pred cccCcHHHHHHhhhhhhhhh--eeeeeccccccHH------HHHHHHHHHHHHHhhhhccc-------------------
Confidence 654444444433 456554 5778888888886 88999999999998874431
Q ss_pred cccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-cchHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 041310 171 QLRHHGNENWFKGSALILTSHISWSAWLILLATVSKDYPA-PLSLNALICFFASLQSSFVALFLGRNPTLWK 241 (254)
Q Consensus 171 ~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (254)
+.+++-+..|..+.-+|-++=|.--.+++|..|.+|. .-.+.++...+|.+.++......++-.+.|.
T Consensus 182 ---~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~ 250 (367)
T KOG1582|consen 182 ---QTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWT 250 (367)
T ss_pred ---ccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhH
Confidence 1223445789999999999989888888888887764 2345777778888877777776766444443
No 85
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=83.32 E-value=29 Score=29.89 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-HHHHHHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHHHHHH
Q 041310 5 SPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYR-HVLAMVLLGPFAYVLERKHRPK-LSFAVMAKIFVLALFGATI 82 (254)
Q Consensus 5 ~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R-~~~a~l~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~l 82 (254)
.|.++++.++++=|...+.....++++-.|+..--.+ ...+.+..++.....++....+ --.+.+-.....-++..+.
T Consensus 114 ~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~ 193 (244)
T PF04142_consen 114 LGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQAI 193 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHHH
Confidence 5778889999999999999977776633444444444 3444444444333322211111 1112222222222222344
Q ss_pred HHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHcccccccc
Q 041310 83 HLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKIT 125 (254)
Q Consensus 83 ~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~ 125 (254)
...+--.-+||.+.-.=..-....-+.+.++++.+++.+++..
T Consensus 194 gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~ 236 (244)
T PF04142_consen 194 GGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS 236 (244)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence 4455566788988877777788888999999999999999985
No 86
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=81.39 E-value=42 Score=30.48 Aligned_cols=180 Identities=13% Similarity=0.119 Sum_probs=105.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCHHHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHR----PKLSFAVMAKIFVLALFG 79 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~ 79 (254)
..+.+...++.+.=|+..+-.|...+=.-..+.++ ..+++-+++-.+.....-+.. ...+...+....+.|++-
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv--~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lW 83 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLV--QGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLW 83 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHH--HHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHH
Confidence 35788888999999999999998754322233333 444444443333322211110 122334555566677774
Q ss_pred HHHHHHHHHHhhhccchhhHh-hhcchhHHHHHHHHHHHcccccc--ccccCCCchhHHHHHHHHhHHHHhhhccccccc
Q 041310 80 ATIHLNVYYTGFSYVSLTVAT-ALSNVIPSFTFLLAFLLGMEKVK--ITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLK 156 (254)
Q Consensus 80 ~~l~~~l~~~~l~~~~~~~a~-~l~~~~Pv~~~lls~~~~~e~~~--~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~ 156 (254)
.+....|=.+++|.+.+... +...+.-++-.++-.++.++ ++ ..+.-.+..++|.+++++|+.++... |..
T Consensus 84 -GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~-~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A-G~~--- 157 (344)
T PF06379_consen 84 -GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGT-FDELLATPSGQIVLLGVAVCLIGIAICGKA-GSM--- 157 (344)
T ss_pred -hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCc-ccccccCCCchhhhhHHHHHHHHHHHHhHH-HHh---
Confidence 46677888899998888644 44556666666665544332 11 00111335899999999999998632 210
Q ss_pred CccCCccccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 041310 157 GFVQKPLIHIYDTDQLRHHGNENWFKGSALILTSHISWSAWLILL 201 (254)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~A~~~i~~ 201 (254)
++- ++ + .+.++.+.-.|.++++.|.+.-|++++-.
T Consensus 158 ----Ke~----~~-~-~~~~efn~~kGl~iAv~sGv~Sa~fn~g~ 192 (344)
T PF06379_consen 158 ----KEK----EL-G-EEAKEFNFKKGLIIAVLSGVMSACFNFGL 192 (344)
T ss_pred ----hhh----hh-c-cchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 000 00 0 11234566799999999999888887644
No 87
>COG2510 Predicted membrane protein [Function unknown]
Probab=79.38 E-value=11 Score=29.43 Aligned_cols=51 Identities=14% Similarity=-0.023 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310 184 SALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR 235 (254)
Q Consensus 184 ~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (254)
.++++++|+++++-.++.|--.|+.+ |...+.....+..+.+....+..++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~ 55 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGN 55 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCc
Confidence 57899999999999999988888876 4677888888888888888877766
No 88
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=78.43 E-value=28 Score=29.05 Aligned_cols=105 Identities=14% Similarity=0.026 Sum_probs=59.6
Q ss_pred hhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhhhccccccc--CccCCccccccccccccC
Q 041310 97 TVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTFWKRGCLLK--GFVQKPLIHIYDTDQLRH 174 (254)
Q Consensus 97 ~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~g~~~~~--~~~~~~~~~~~~~~~~~~ 174 (254)
.......+..|+++++..+...+||.+.. |+++.++...|++.....+...... ....... ...++..+..
T Consensus 5 Pa~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~-~~~~~~~~~~ 77 (222)
T TIGR00803 5 PIHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAI-VQMVQSSAKT 77 (222)
T ss_pred cchHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHee-eecCCCCccc
Confidence 33445667788899999998999998865 9999999999987543221100000 0000000 0000000000
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 041310 175 HGNENWFKGSALILTSHISWSAWLILLATVSKDY 208 (254)
Q Consensus 175 ~~~~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~ 208 (254)
...++...|....+.+..+-+.-.+.+++..|+.
T Consensus 78 ~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~ 111 (222)
T TIGR00803 78 LMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDG 111 (222)
T ss_pred cccccHHHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence 1123456777777777777777788888876654
No 89
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=78.33 E-value=1.9 Score=37.24 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHH
Q 041310 67 AVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIF 146 (254)
Q Consensus 67 ~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li 146 (254)
|+-..-..-|++- ...+..++.+-+..+.+.+--+..+-.+...+-+.+++|||=++|++. ..++|+++.++|..++
T Consensus 207 K~t~~nii~G~~W-a~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~--~v~iGiilivvgai~l 283 (288)
T COG4975 207 KYTWLNIIPGLIW-AIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMV--YVIIGIILIVVGAILL 283 (288)
T ss_pred HHHHHHHhhHHHH-HhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhh--hhhhhHHHHHHHhhhh
Confidence 3333445567764 577888899999888888777777778888888999999999987331 2345555666666554
Q ss_pred h
Q 041310 147 T 147 (254)
Q Consensus 147 ~ 147 (254)
.
T Consensus 284 g 284 (288)
T COG4975 284 G 284 (288)
T ss_pred h
Confidence 3
No 90
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=76.94 E-value=23 Score=31.30 Aligned_cols=113 Identities=14% Similarity=0.152 Sum_probs=77.7
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHhhcC--CCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhc
Q 041310 29 EKGLNHLVFVVYRHVLAMVLLGPFAYVLERK--HRP---KLSFAVMAKIFVLALFGATIHLNVYYTGFSYVSLTVATALS 103 (254)
Q Consensus 29 ~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~--~~~---~~~~~~~~~~~~~g~~~~~l~~~l~~~~l~~~~~~~a~~l~ 103 (254)
.++-+..+++++...++.+.++......+.- .++ +-+.|.....++.++.+ .+.+..-..-++.-++..+..+.
T Consensus 215 ~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~g-ylG~~~VLalI~~fGA~~aatvT 293 (367)
T KOG1582|consen 215 MNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAG-YLGIVFVLALIKLFGALIAATVT 293 (367)
T ss_pred hCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHh-HhhHHHHHHHHHHhchhHHHHHH
Confidence 3456778899999999888777766553221 111 22344555555555544 34444444445556777888888
Q ss_pred chhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310 104 NVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF 148 (254)
Q Consensus 104 ~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 148 (254)
..---.+.++|.+++.++++.. ...+.++.+.|+.+=..
T Consensus 294 TaRKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~y 332 (367)
T KOG1582|consen 294 TARKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMY 332 (367)
T ss_pred HhHhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcc
Confidence 8888899999999999999997 78888888999887663
No 91
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=75.34 E-value=43 Score=29.81 Aligned_cols=137 Identities=17% Similarity=0.304 Sum_probs=86.6
Q ss_pred chhHHHHHHHHHHHHHHHHHH-HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHh-----hcC--CCCCCCHHHHHH----
Q 041310 4 YSPYVAMILVQFAYGGSNILV-KISLEKGLNHLVFVVYRHVLAMVLLGPFAYVL-----ERK--HRPKLSFAVMAK---- 71 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~-K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~-----~~~--~~~~~~~~~~~~---- 71 (254)
+.|.++.+.+.++-+.-.+.= |++..++++|.+.+.+..+++.+++-.+.... .+. ..|+-.+.|+..
T Consensus 175 itGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~ 254 (372)
T KOG3912|consen 175 ITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAA 254 (372)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHH
Confidence 357889999999999988875 44444579999999999888854443333221 111 112333344432
Q ss_pred -----HHHHHHHHHHHHHHHH-HHhh---hccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHh
Q 041310 72 -----IFVLALFGATIHLNVY-YTGF---SYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGG 142 (254)
Q Consensus 72 -----~~~~g~~~~~l~~~l~-~~~l---~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~G 142 (254)
.+.+.+.+....-.+| +.|+ |+.++++=.++=..--.++.+++....+|++..- ++.|.++-..|
T Consensus 255 ~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi~G 328 (372)
T KOG3912|consen 255 LQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILIMG 328 (372)
T ss_pred hcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 1222222222221122 2333 3456667777766666777778888899999996 99999999999
Q ss_pred HHHH
Q 041310 143 SLIF 146 (254)
Q Consensus 143 v~li 146 (254)
.++-
T Consensus 329 i~lY 332 (372)
T KOG3912|consen 329 IILY 332 (372)
T ss_pred HHHH
Confidence 8864
No 92
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=74.66 E-value=34 Score=25.71 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHH--HHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 041310 8 VAMILVQFAYGGSNILVKISLEKGLNHLVFV--VYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVLALFGATIHLN 85 (254)
Q Consensus 8 l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~--~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~ 85 (254)
..++...++||.+..+.|..... .+..--. -+|..+ ++.+.. -.+++.+..+ ++--++ ..
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~g-~~~v~~~~~k~~~~l-----------qe~~tl-~l~w~Y~iPF-llNqcg----Sa 67 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSLG-WDKVKSSSRKIMIAL-----------QEMKTL-FLNWEYLIPF-LLNQCG----SA 67 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHhh-HhhccCchHHHHHHH-----------HHHHHH-HHhHHHHHHH-HHHHhh----HH
Confidence 46788899999999999987543 3211111 111110 111000 1123333332 222333 45
Q ss_pred HHHHhhhccchhhHhhhcch-hHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 86 VYYTGFSYVSLTVATALSNV-IPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 86 l~~~~l~~~~~~~a~~l~~~-~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
+||.-++.++-+.+.-+.+. .-.++++.+..+ +|+..-+ .-++|..+.++|+.+++
T Consensus 68 ly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~-----~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 68 LYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGG-----LALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccc-----eeehhhhHHhhhhhhee
Confidence 67788899999988877665 556777777754 5555544 28899999999987653
No 93
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=68.91 E-value=28 Score=27.15 Aligned_cols=52 Identities=15% Similarity=0.085 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310 184 SALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR 235 (254)
Q Consensus 184 ~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (254)
.++++.+..+-++...+|.++.++..+|...+++.+..|.+.+.....+.++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~ 54 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGR 54 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4677889999999999999999987657888999999999999888887766
No 94
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=68.20 E-value=56 Score=26.52 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=39.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhh-----CCCcchHHHHHHHHHHHHHHHHHHH
Q 041310 178 ENWFKGSALILTSHISWSAWLILLATVSKD-----YPAPLSLNALICFFASLQSSFVALF 232 (254)
Q Consensus 178 ~~~~~G~~l~l~aa~~~A~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (254)
++........+.+++.|++-.++.....++ .|.|+.-..+.+..+++.+..+.-+
T Consensus 128 ~~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSlaFmgF 187 (193)
T COG4657 128 HNFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLAFMGF 187 (193)
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHcCc
Confidence 445667888899999999988877665543 4556766777777777777665543
No 95
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=67.13 E-value=7.9 Score=33.83 Aligned_cols=133 Identities=13% Similarity=0.062 Sum_probs=80.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH-HHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVLERKHRPKLSFAVMAKIFVL-ALFGATI 82 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~l 82 (254)
.+|-.+++.++.+++.+.+.-.....+ .|-.++...-.++++++-.+-... +|+....+.|. +....++ ..+..++
T Consensus 165 ~~GD~lvi~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaIIsaIQ~i~-~~~~~~tl~w~-~~i~~yl~f~L~MFl 241 (336)
T KOG2766|consen 165 VKGDFLVIAGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAIISAIQFIF-ERHHVSTLHWD-SAIFLYLRFALTMFL 241 (336)
T ss_pred ccCcEEEEecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHhh-hccceeeEeeh-HHHHHHHHHHHHHHH
Confidence 456677788889999999988888777 999999998889988887776433 44433334332 2211111 1122122
Q ss_pred HHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 83 HLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 83 ~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
.+.+.-.-++..+++.-.+=.-+.-.+..++ ..++-+++|- -.++.+....|.++-.
T Consensus 242 lYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wL------Y~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 242 LYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWL------YFLAFATIATGLIIYS 298 (336)
T ss_pred HHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhh------hHHHHHHHHHhhEEee
Confidence 2333333445555553333333344555555 3455567775 7888888888887653
No 96
>PRK02237 hypothetical protein; Provisional
Probab=65.79 E-value=9.3 Score=28.66 Aligned_cols=40 Identities=13% Similarity=0.288 Sum_probs=31.0
Q ss_pred cchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310 103 SNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF 148 (254)
Q Consensus 103 ~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 148 (254)
-...-+...+-.+.+-++|+++. .++|.+++++|+.++.+
T Consensus 66 GGvyI~~Sl~W~w~vdg~~Pd~~------D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 66 GGVYVAGSLLWLWVVDGVRPDRW------DWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhHHHHHHHHHHHHhcCcCCChh------HHHhHHHHHHhHHHhee
Confidence 33444555566778888888886 99999999999998863
No 97
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.24 E-value=54 Score=26.15 Aligned_cols=55 Identities=5% Similarity=0.016 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHhcC
Q 041310 181 FKGSALILTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFLGR 235 (254)
Q Consensus 181 ~~G~~l~l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (254)
....+..+++..+-....-+|.++.+...+|..-..+.+..|.+.+....++.++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~ 58 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG 58 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457788889999999999999998887777888999999999999888887544
No 98
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=60.53 E-value=9.6 Score=28.50 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=31.6
Q ss_pred cchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310 103 SNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF 148 (254)
Q Consensus 103 ~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 148 (254)
-...-+...+-.+.+-++|+++. .++|..++++|+.++.+
T Consensus 64 GGvfI~~Sl~W~w~vdg~~Pd~~------D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 64 GGVFIVASLLWGWLVDGVRPDRW------DWIGAAICLVGVAIILF 103 (107)
T ss_pred hhhHHHHHHHHHhhhcCcCCChH------HHHhHHHHHHhHHheEe
Confidence 34455556666778888888886 99999999999998863
No 99
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=42.34 E-value=33 Score=27.39 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=21.0
Q ss_pred hhhccchhhHhhhcchhHHHHHHHHHHHc
Q 041310 90 GFSYVSLTVATALSNVIPSFTFLLAFLLG 118 (254)
Q Consensus 90 ~l~~~~~~~a~~l~~~~Pv~~~lls~~~~ 118 (254)
++..-+.-+++.+.|..|++..+++..+.
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666788889999988888776543
No 100
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=41.10 E-value=19 Score=26.89 Aligned_cols=37 Identities=11% Similarity=0.309 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310 106 IPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF 148 (254)
Q Consensus 106 ~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 148 (254)
..+....-.++.-+.++++. .++|.+++++|+.++.+
T Consensus 68 yI~~sL~W~~~Vdg~~pdr~------D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 68 YIAASLAWLWVVDGVRPDRY------DWIGAAICLAGVAVILF 104 (109)
T ss_pred HHHHHHHHHHHHcCcCCcHH------HhhhHHHHHhceeeeEe
Confidence 33344444566777777776 99999999999888764
No 101
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=38.00 E-value=29 Score=26.72 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=28.0
Q ss_pred hccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHH
Q 041310 92 SYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSL 144 (254)
Q Consensus 92 ~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 144 (254)
+..+.-.++++.|..|+...+++.++. ..+... +..+++.++.|+.
T Consensus 63 ~~~~~~~aa~l~Y~lPll~li~g~~l~-~~~~~~------e~~~~l~~l~~l~ 108 (135)
T PF04246_consen 63 PESSLLKAAFLVYLLPLLALIAGAVLG-SYLGGS------ELWAILGGLLGLA 108 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH------HHHHHHHHHHHHH
Confidence 344556788889999988888877543 333332 4444444444443
No 102
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=36.66 E-value=3.5e+02 Score=25.85 Aligned_cols=49 Identities=4% Similarity=-0.101 Sum_probs=28.7
Q ss_pred HhhhcchhHHHHHHHHHHH--ccccccc-cccCCCchhHHHHHHHHhHHHHh
Q 041310 99 ATALSNVIPSFTFLLAFLL--GMEKVKI-TSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 99 a~~l~~~~Pv~~~lls~~~--~~e~~~~-~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
++.+.+.+|+++.+++.++ +-.|..+ +|.||.+.-.+..+.+.|+..++
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~ 361 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCI 361 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 6777889999888776542 2123322 22344455566666666665544
No 103
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.89 E-value=69 Score=28.45 Aligned_cols=138 Identities=19% Similarity=0.132 Sum_probs=86.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCC-CHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSNILVKISLEK-GLNHLVFVVYRHVLAMVLLGPFAYVLERK----HRPKL-SFAVMAKIFVLAL 77 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~v~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~~~~----~~~~~-~~~~~~~~~~~g~ 77 (254)
+.|.++-+.+.+.-+.+.+.+|..+.. +=.-..+.++-...+.++.+|.....+.- ..|+. ..+-|..+.+-|+
T Consensus 184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl 263 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL 263 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence 468889999999999999999976654 11245677788889988888877653211 11233 4455566677777
Q ss_pred HHHHHHHHHHHHhhhccchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310 78 FGATIHLNVYYTGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF 148 (254)
Q Consensus 78 ~~~~l~~~l~~~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 148 (254)
++..+++.. .+=+|-|+|-.-.+=..--...=.+++..+++|.-+.- .|-+-.+.+.|-..-..
T Consensus 264 fgF~mgyvT-g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l------wwtsn~~vLvgs~~YT~ 327 (347)
T KOG1442|consen 264 FGFAMGYVT-GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL------WWTSNIVVLVGSLAYTL 327 (347)
T ss_pred HHHHhhhee-eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh------eeeeeEEEEehhHHHHH
Confidence 775444422 22334444432222222222334567788999988775 67777777777666543
No 104
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=33.30 E-value=70 Score=25.39 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=21.4
Q ss_pred hhhccchhhHhhhcchhHHHHHHHHHHH
Q 041310 90 GFSYVSLTVATALSNVIPSFTFLLAFLL 117 (254)
Q Consensus 90 ~l~~~~~~~a~~l~~~~Pv~~~lls~~~ 117 (254)
|+.--+.-.++.+.|+.|++..+++.++
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566778899999998888887755
No 105
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=29.76 E-value=4.1e+02 Score=23.75 Aligned_cols=134 Identities=18% Similarity=0.230 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHh---hc---CC----CCCCCHHHHHHHHH
Q 041310 6 PYVAMILVQFAYGGSNILVKISLEK-GLNHLVFVVYRHVLAMVLLGPFAYVL---ER---KH----RPKLSFAVMAKIFV 74 (254)
Q Consensus 6 ~~l~li~a~~~wg~~~v~~K~~~~~-~~~p~~~~~~R~~~a~l~l~~~~~~~---~~---~~----~~~~~~~~~~~~~~ 74 (254)
|..++..+.+.=+...+......+. |=++=+..++-..+.....+...--. .+ +. -|....+ .+....
T Consensus 165 Gi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~-vP~~~~ 243 (330)
T KOG1583|consen 165 GIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFK-VPSMWV 243 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCcc-ccHHHH
Confidence 5556666666666666666666554 67788999999888876554432100 00 00 0111111 111111
Q ss_pred HHHHHHHHHHHHHHHhhhc----cchhhHhhhcchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 75 LALFGATIHLNVYYTGFSY----VSLTVATALSNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 75 ~g~~~~~l~~~l~~~~l~~----~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
.=++ ..+.|+...-|+-. +++-+.++...+-=.+..++|...++.++++. .|+|.++.|.|.++-.
T Consensus 244 yLl~-n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~------h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 244 YLLF-NVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPW------HWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHH-HHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHH------HHHHHHHHHHHHHHHH
Confidence 1112 24555555555443 34444555666677888899999999999997 9999999999998875
No 106
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=27.76 E-value=93 Score=27.64 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 041310 179 NWFKGSALILTSHISWSAWLILLATVSKDY 208 (254)
Q Consensus 179 ~~~~G~~l~l~aa~~~A~~~i~~~~~~~~~ 208 (254)
++.+|..+++.++++.+...+++|+-.++.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~ 33 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRL 33 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999976543
No 107
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=27.58 E-value=43 Score=30.00 Aligned_cols=129 Identities=9% Similarity=0.114 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHh----hc--CCCC-------CCCHHHHHHHHHHH
Q 041310 10 MILVQFAYGGSNILVKISLEKGLNHLVFVVYRHVLAMVLLGPFAYVL----ER--KHRP-------KLSFAVMAKIFVLA 76 (254)
Q Consensus 10 li~a~~~wg~~~v~~K~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~----~~--~~~~-------~~~~~~~~~~~~~g 76 (254)
|+++.++||+.....|.+.+++--| +..-+-+.++-++..++..+. +. ...| +.+++.+...+.-|
T Consensus 1 M~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 4678899999999999987654333 233444444433333332221 11 0111 23444444445555
Q ss_pred HHHHHHHHHHHHHhhhccchhhHhhhcchhH-HHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHH
Q 041310 77 LFGATIHLNVYYTGFSYVSLTVATALSNVIP-SFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLI 145 (254)
Q Consensus 77 ~~~~~l~~~l~~~~l~~~~~~~a~~l~~~~P-v~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 145 (254)
++- .+.+.+.-+++.+.+.+.+-.+....- +.-+.+-+ ++..|.++-+ ..+.|..+.++.+++
T Consensus 80 vvf-nlgNillq~aia~aGmSVafpvg~glalVlGv~~NY-fld~~~n~a~----iLF~GV~cf~iAI~l 143 (336)
T PF07168_consen 80 VVF-NLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNY-FLDPKINRAE----ILFPGVACFLIAIIL 143 (336)
T ss_pred Hhh-hhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeee-eccCCCCCce----EEEccHHHHHHHHHH
Confidence 553 567788888888888887776654333 33333333 3445554321 134455555444443
No 108
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=27.14 E-value=1.4e+02 Score=17.70 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041310 183 GSALILTSHISWSAWLILL 201 (254)
Q Consensus 183 G~~l~l~aa~~~A~~~i~~ 201 (254)
=+++-++.|.+||+|+|..
T Consensus 7 iVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 7 VIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 3566788999999999874
No 109
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=25.06 E-value=3e+02 Score=20.64 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=21.8
Q ss_pred HHHHHHHccccccccccCCCchhHHHHHHHHhHHH
Q 041310 111 FLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLI 145 (254)
Q Consensus 111 ~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 145 (254)
+.++.++++|++++. ...|.++.+.++.+
T Consensus 77 ~~Fsv~~l~E~l~~n------~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWN------YLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHH------HHHHHHHHHHhhhe
Confidence 456788999999997 77777776666544
No 110
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=23.41 E-value=1.1e+02 Score=18.73 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041310 184 SALILTSHISWSAWLILL 201 (254)
Q Consensus 184 ~~l~l~aa~~~A~~~i~~ 201 (254)
+++-++.|.+|++|+|..
T Consensus 8 Vl~Pil~A~~Wa~fNIg~ 25 (40)
T PRK13240 8 VLAPILAAAGWAVFNIGK 25 (40)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 566688999999999864
No 111
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=20.22 E-value=2.1e+02 Score=17.04 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041310 184 SALILTSHISWSAWLILL 201 (254)
Q Consensus 184 ~~l~l~aa~~~A~~~i~~ 201 (254)
++.-++.|.+|++|+|..
T Consensus 8 Vl~Pil~A~gWa~fNIg~ 25 (36)
T PF06298_consen 8 VLLPILPAAGWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 566688999999999875
No 112
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=20.21 E-value=6.5e+02 Score=25.45 Aligned_cols=80 Identities=8% Similarity=-0.023 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh------cc----chhhHhhhcchhHHHHHHHHHHHcc-ccccccccCCCchhHH
Q 041310 67 AVMAKIFVLALFGATIHLNVYYTGFS------YV----SLTVATALSNVIPSFTFLLAFLLGM-EKVKITSGRGGAKVLG 135 (254)
Q Consensus 67 ~~~~~~~~~g~~~~~l~~~l~~~~l~------~~----~~~~a~~l~~~~Pv~~~lls~~~~~-e~~~~~~~~~~~~~~g 135 (254)
+.+......|..........+++.+. .. +...+....++.-+++-.+-.+..| ++..++++||++-.++
T Consensus 662 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~~~~~~~~~~~~~r~~~~~~~~~p~~~l~~~ 741 (755)
T TIGR01647 662 EVFTMSTVLGIYLVISTFLLLAIALDTSFFIDKFGLQLLHGNLQSLIYLQVSISGQATIFVTRTHGFFWSERPGKLLFIA 741 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcccccccHhhhHHHHHHHHHHHHHHHHheeccCCCCcccCCcHHHHHH
Confidence 34445666777665444555555553 11 1223334444444444444444433 6666777788778777
Q ss_pred HHHHHHhHHHH
Q 041310 136 TIVCIGGSLIF 146 (254)
Q Consensus 136 ~~l~~~Gv~li 146 (254)
.++..+-..++
T Consensus 742 ~~~~~~~~~~~ 752 (755)
T TIGR01647 742 FVIAQIIATFI 752 (755)
T ss_pred HHHHHHHHHHH
Confidence 77776655444
Done!