Query 041310
Match_columns 254
No_of_seqs 143 out of 1434
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 09:35:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.5 1.5E-06 5E-11 64.9 11.7 68 74-147 34-102 (110)
2 2i68_A Protein EMRE; transmemb 98.5 1.9E-07 6.6E-12 72.4 6.5 69 74-148 34-103 (137)
3 2i68_A Protein EMRE; transmemb 10.1 5.2E+02 0.018 18.8 6.1 23 188-210 34-56 (137)
4 1q90_R Cytochrome B6-F complex 8.3 3.9E+02 0.013 16.1 3.6 19 62-80 7-25 (49)
5 3b5d_A Multidrug transporter E 8.3 5.4E+02 0.018 17.7 6.3 44 188-232 34-77 (110)
6 2hac_A T-cell surface glycopro 5.8 2.5E+02 0.0085 15.5 1.2 16 109-124 15-30 (33)
7 3arc_L Photosystem II reaction 4.1 6.4E+02 0.022 14.1 2.9 18 4-21 18-35 (37)
8 3hd6_A Ammonium transporter RH 3.9 2E+03 0.068 19.6 16.0 24 2-26 149-172 (490)
9 2k9p_A Pheromone alpha factor 3.8 9.4E+02 0.032 15.9 3.3 24 39-62 26-49 (80)
10 2k9j_B Integrin beta-3; transm 3.8 7.3E+02 0.025 14.2 2.7 20 128-147 4-23 (43)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.52 E-value=1.5e-06 Score=64.87 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHh
Q 041310 74 VLALFGATIHLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 74 ~~g~~~~~l~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~ 147 (254)
..+++...+++.++..++++.+.+.+..+ ..+.|+++++++++++||+++++ +++|+++.++|++++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 35555567889999999999999999888 89999999999999999999997 9999999999999886
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.50 E-value=1.9e-07 Score=72.38 Aligned_cols=69 Identities=17% Similarity=0.264 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhHhhh-cchhHHHHHHHHHHHccccccccccCCCchhHHHHHHHHhHHHHhh
Q 041310 74 VLALFGATIHLNVYYTGFSYVSLTVATAL-SNVIPSFTFLLAFLLGMEKVKITSGRGGAKVLGTIVCIGGSLIFTF 148 (254)
Q Consensus 74 ~~g~~~~~l~~~l~~~~l~~~~~~~a~~l-~~~~Pv~~~lls~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 148 (254)
.++++.+.+++.++..++++.+++.+..+ .++.|++++++++++++|+++++ +++|+++.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 45666678899999999999999999888 89999999999999999999998 99999999999999874
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=10.06 E-value=5.2e+02 Score=18.83 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCC
Q 041310 188 LTSHISWSAWLILLATVSKDYPA 210 (254)
Q Consensus 188 l~aa~~~A~~~i~~~~~~~~~~~ 210 (254)
+++.++++++..+.-+..|+.|.
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~ 56 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPT 56 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHhCCh
Confidence 34555565555555555677664
No 4
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=8.27 E-value=3.9e+02 Score=16.05 Aligned_cols=19 Identities=11% Similarity=0.210 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 041310 62 PKLSFAVMAKIFVLALFGA 80 (254)
Q Consensus 62 ~~~~~~~~~~~~~~g~~~~ 80 (254)
|..+||+++..+..|....
T Consensus 7 pdm~RRqfln~l~~G~~a~ 25 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAGL 25 (49)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 5567888888877777653
No 5
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=8.26 E-value=5.4e+02 Score=17.69 Aligned_cols=44 Identities=16% Similarity=0.094 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHH
Q 041310 188 LTSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALF 232 (254)
Q Consensus 188 l~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (254)
+++.+++.++..+..+..|+.|.......|. ..+.+.....+.+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~-g~~~v~~~l~~~~ 77 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWS-GVGIVLISLLSWG 77 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHh-hHHHHHHHHHHHH
Confidence 4555666666655555667775322223322 3444444444433
No 6
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=5.83 E-value=2.5e+02 Score=15.52 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=10.4
Q ss_pred HHHHHHHHHccccccc
Q 041310 109 FTFLLAFLLGMEKVKI 124 (254)
Q Consensus 109 ~~~lls~~~~~e~~~~ 124 (254)
...++..++.|||+++
T Consensus 15 Ygii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 15 YGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3445566677887765
No 7
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=4.15 E-value=6.4e+02 Score=14.11 Aligned_cols=18 Identities=6% Similarity=0.281 Sum_probs=11.5
Q ss_pred chhHHHHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSN 21 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~ 21 (254)
++|.+++...+++++..+
T Consensus 18 y~GLLlifvlavlFssyf 35 (37)
T 3arc_L 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 356666677777776554
No 8
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=3.91 E-value=2e+03 Score=19.56 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=11.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHH
Q 041310 2 EAYSPYVAMILVQFAYGGSNILVKI 26 (254)
Q Consensus 2 ~~~~~~l~li~a~~~wg~~~v~~K~ 26 (254)
||.|..-+++.+ ++|...+.....
T Consensus 149 eR~k~~~~li~~-~l~~~vY~~~~w 172 (490)
T 3hd6_A 149 GKVSPIQLLIMT-FFQVTLFAVNEF 172 (490)
T ss_dssp TSSCHHHHHHHH-HHHHHHHHHHHH
T ss_pred hcccHHHHHHHH-HHHHHHHhhhHH
Confidence 555654444443 346555444443
No 9
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=3.81 E-value=9.4e+02 Score=15.86 Aligned_cols=24 Identities=17% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC
Q 041310 39 VYRHVLAMVLLGPFAYVLERKHRP 62 (254)
Q Consensus 39 ~~R~~~a~l~l~~~~~~~~~~~~~ 62 (254)
+.|...+.+.++.+....++|+.|
T Consensus 26 G~~iGAs~llliil~lltkkrrsp 49 (80)
T 2k9p_A 26 GVRSGAAALTLIVVWITSRSRKTP 49 (80)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHhccccCh
No 10
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=3.79 E-value=7.3e+02 Score=14.23 Aligned_cols=20 Identities=15% Similarity=0.471 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHHHhHHHHh
Q 041310 128 RGGAKVLGTIVCIGGSLIFT 147 (254)
Q Consensus 128 ~~~~~~~g~~l~~~Gv~li~ 147 (254)
|.+....+++++++|.+++.
T Consensus 4 p~~~n~~~Iv~gvi~~ivli 23 (43)
T 2k9j_B 4 PKGPDILVVLLSVMGAILLI 23 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCEeehHHHHHHHHHHH
Done!