Query 041310
Match_columns 254
No_of_seqs 143 out of 1434
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 09:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041310.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041310hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 12.6 83 0.006 14.9 2.9 18 182-199 3-20 (27)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 4.9 2.5E+02 0.018 14.3 2.7 18 4-21 18-35 (37)
3 d1q90r_ f.23.12.1 (R:) ISP sub 4.1 3.2E+02 0.023 14.3 3.6 18 62-79 5-22 (39)
4 d1gl4a1 d.22.1.2 (A:399-631) D 2.9 1.9E+02 0.014 21.6 0.9 36 89-125 43-78 (233)
5 d1pv7a_ f.38.1.2 (A:) Lactose 2.3 9.9E+02 0.072 16.6 8.4 24 73-96 320-343 (417)
6 d1u7ga_ f.44.1.1 (A:) Ammonium 1.9 1.4E+03 0.1 17.4 16.9 43 189-233 289-331 (383)
7 d1v54m_ f.23.7.1 (M:) Mitochon 1.7 6.6E+02 0.048 13.2 1.8 14 132-145 15-28 (43)
8 d2p7tc1 f.14.1.1 (C:86-119) Po 1.6 6.3E+02 0.046 12.1 1.7 8 112-119 25-32 (34)
9 d1q79a1 a.160.1.1 (A:215-364) 1.3 4.4E+02 0.032 17.9 0.6 19 189-210 30-48 (150)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 1.3 7.1E+02 0.052 11.6 3.9 12 224-235 14-25 (30)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.58 E-value=83 Score=14.94 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041310 182 KGSALILTSHISWSAWLI 199 (254)
Q Consensus 182 ~G~~l~l~aa~~~A~~~i 199 (254)
+|.+.+-++.++||.|--
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577777888888888743
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.87 E-value=2.5e+02 Score=14.29 Aligned_cols=18 Identities=6% Similarity=0.281 Sum_probs=10.9
Q ss_pred chhHHHHHHHHHHHHHHH
Q 041310 4 YSPYVAMILVQFAYGGSN 21 (254)
Q Consensus 4 ~~~~l~li~a~~~wg~~~ 21 (254)
++|.+++...+++++.++
T Consensus 18 y~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 346666666666666554
No 3
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.06 E-value=3.2e+02 Score=14.29 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 041310 62 PKLSFAVMAKIFVLALFG 79 (254)
Q Consensus 62 ~~~~~~~~~~~~~~g~~~ 79 (254)
|...+|++..++.+|-..
T Consensus 5 pDMgrR~~MNLll~G~~~ 22 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAG 22 (39)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccc
Confidence 455678888887777654
No 4
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.89 E-value=1.9e+02 Score=21.63 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=29.5
Q ss_pred HhhhccchhhHhhhcchhHHHHHHHHHHHcccccccc
Q 041310 89 TGFSYVSLTVATALSNVIPSFTFLLAFLLGMEKVKIT 125 (254)
Q Consensus 89 ~~l~~~~~~~a~~l~~~~Pv~~~lls~~~~~e~~~~~ 125 (254)
.+++.+++..+..+.-+.|+..+ ++|+|-+|.-...
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~~-igWlFA~e~~~a~ 78 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGGI-IGWMFAVEQDGFK 78 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHHH-HHHHTCEECTTCC
T ss_pred EEccCCChhHhhhhhhhhhhcCc-eeeeEEeecCCcc
Confidence 46778888888999999988874 5999999887764
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.29 E-value=9.9e+02 Score=16.62 Aligned_cols=24 Identities=4% Similarity=-0.136 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccch
Q 041310 73 FVLALFGATIHLNVYYTGFSYVSL 96 (254)
Q Consensus 73 ~~~g~~~~~l~~~l~~~~l~~~~~ 96 (254)
.+.|+...........+-.+..+.
T Consensus 320 ~l~g~~~~~~~~~~~~~~~~~~~~ 343 (417)
T d1pv7a_ 320 TLHMFEVPFLLVGCFKYITSQFEV 343 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCH
Confidence 344444322233333333444443
No 6
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=1.91 E-value=1.4e+03 Score=17.38 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHHHHHHHHHh
Q 041310 189 TSHISWSAWLILLATVSKDYPAPLSLNALICFFASLQSSFVALFL 233 (254)
Q Consensus 189 ~aa~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (254)
.+.+++-.+..+.+|. |++|+......+..-|....+...++-
T Consensus 289 ~g~i~~~~~~~l~~~~--~iDD~~~~~~vHg~~Gi~G~l~~glfa 331 (383)
T d1u7ga_ 289 AGLAGLWGVTMLKRLL--RVDDPCDVFGVHGVCGIVGCIMTGIFA 331 (383)
T ss_dssp HHHHHHHHHHHHHHHH--CSCCGGGHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHhhc--ccccccceEeehhhhHHHHHHHHHHhc
Confidence 3445555545443332 455667777777777777766666653
No 7
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.72 E-value=6.6e+02 Score=13.21 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=7.8
Q ss_pred hhHHHHHHHHhHHH
Q 041310 132 KVLGTIVCIGGSLI 145 (254)
Q Consensus 132 ~~~g~~l~~~Gv~l 145 (254)
+.+|+..+|.+.+.
T Consensus 15 ~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 15 QAIGLSVTFLSFLL 28 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 45566666555543
No 8
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=1.59 E-value=6.3e+02 Score=12.13 Aligned_cols=8 Identities=25% Similarity=0.654 Sum_probs=3.1
Q ss_pred HHHHHHcc
Q 041310 112 LLAFLLGM 119 (254)
Q Consensus 112 lls~~~~~ 119 (254)
+..|+..+
T Consensus 25 ~atwfvgr 32 (34)
T d2p7tc1 25 LATWFVGR 32 (34)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhcc
Confidence 33344333
No 9
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.32 E-value=4.4e+02 Score=17.94 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCCC
Q 041310 189 TSHISWSAWLILLATVSKDYPA 210 (254)
Q Consensus 189 ~aa~~~A~~~i~~~~~~~~~~~ 210 (254)
++++.||+ +..+..+.+|+
T Consensus 30 lGGI~waI---LvArvCql~Pn 48 (150)
T d1q79a1 30 LGGVSWAM---LVARTCQLYPN 48 (150)
T ss_dssp BCHHHHHH---HHHHHHHHSTT
T ss_pred cHHHHHHH---HHHHHHHHCCC
Confidence 34555554 45566677775
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.31 E-value=7.1e+02 Score=11.59 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=5.3
Q ss_pred HHHHHHHHHhcC
Q 041310 224 LQSSFVALFLGR 235 (254)
Q Consensus 224 ~~~~~~~~~~~~ 235 (254)
+.++.++.++..
T Consensus 14 i~lfffaiffre 25 (30)
T d2axtt1 14 IALFFFAIFFRE 25 (30)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHhcC
Confidence 334444544443
Done!