Query 041315
Match_columns 285
No_of_seqs 142 out of 1154
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 09:40:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041315.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041315hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 31.5 7.2 0.00053 22.7 0.8 15 140-154 17-31 (37)
2 d1q90a3 f.23.23.1 (A:248-292) 22.6 7.5 0.00054 23.6 -0.3 15 139-153 15-29 (45)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 17.9 76 0.0056 17.9 3.5 22 245-266 15-36 (37)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 4.5 2.9E+02 0.021 14.5 2.4 13 250-262 4-16 (32)
5 d1d4ba_ d.15.2.1 (A:) Cell dea 4.3 57 0.0041 23.7 -1.0 9 142-150 96-104 (122)
6 d1khva_ e.8.1.4 (A:) Viral RNA 3.9 2E+02 0.014 25.0 2.3 22 175-196 302-323 (497)
7 d1k8kf_ d.198.2.1 (F:) ARPC4 ( 3.8 1.5E+02 0.011 22.4 1.0 21 144-164 99-124 (167)
8 d1pd3a_ a.30.3.1 (A:) Nonstruc 3.5 2.3E+02 0.017 16.8 1.5 14 211-224 34-47 (54)
9 d1xr5a_ e.8.1.4 (A:) Viral RNA 3.2 2.9E+02 0.021 23.5 2.7 27 175-201 285-311 (460)
10 d1nkzb_ f.3.1.1 (B:) Light-har 3.1 4.6E+02 0.033 14.8 2.6 20 177-196 17-36 (41)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=31.47 E-value=7.2 Score=22.69 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=11.8
Q ss_pred hhhhhhhhhccCccc
Q 041315 140 MLRTFFTILRRRRIV 154 (285)
Q Consensus 140 l~DTvf~VLrKk~vs 154 (285)
++--+++||||||+-
T Consensus 17 ~laQi~lVlKKKQ~E 31 (37)
T d1vf5c3 17 MLAQLMLILKKKQVE 31 (37)
T ss_dssp HHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHH
Confidence 456779999999864
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=22.56 E-value=7.5 Score=23.55 Aligned_cols=15 Identities=13% Similarity=0.514 Sum_probs=11.5
Q ss_pred hhhhhhhhhhccCcc
Q 041315 139 HMLRTFFTILRRRRI 153 (285)
Q Consensus 139 El~DTvf~VLrKk~v 153 (285)
-++--+++||||||+
T Consensus 15 v~laQi~LVLKKKQf 29 (45)
T d1q90a3 15 VLLTQVLLVLKKKQF 29 (45)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345678999999865
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.94 E-value=76 Score=17.85 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041315 245 RAWVFNSVLNGAILLLFLKFYV 266 (285)
Q Consensus 245 ~~~~~~~~~~~s~l~LF~~Fy~ 266 (285)
....+++......-+||+++|.
T Consensus 15 tsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhc
Confidence 4567888788888899999875
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.50 E-value=2.9e+02 Score=14.46 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 041315 250 NSVLNGAILLLFL 262 (285)
Q Consensus 250 ~~~~~~s~l~LF~ 262 (285)
+.+.++.|+.||-
T Consensus 4 gavfyivfialff 16 (32)
T d2e74e1 4 GAVFYIVFIALFF 16 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHH
Confidence 3445555555553
No 5
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.29 E-value=57 Score=23.70 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=8.2
Q ss_pred hhhhhhhcc
Q 041315 142 RTFFTILRR 150 (285)
Q Consensus 142 DTvf~VLrK 150 (285)
||+|++|++
T Consensus 96 nT~lmvL~~ 104 (122)
T d1d4ba_ 96 DTCLMVLQS 104 (122)
T ss_dssp CCCCCEECS
T ss_pred CCEEEEECC
Confidence 788999999
No 6
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=3.93 E-value=2e+02 Score=25.05 Aligned_cols=22 Identities=5% Similarity=0.027 Sum_probs=17.9
Q ss_pred ccchhhHHHHHhhHHHHHHHHH
Q 041315 175 SQSFQVLAILFTTLVCSVVYGY 196 (285)
Q Consensus 175 ~~~~~~~~~~~Ns~VH~iMY~Y 196 (285)
.++|+....++||.+|.||..|
T Consensus 302 ~PSG~p~Tsi~NSi~N~i~i~~ 323 (497)
T d1khva_ 302 LPSGMPFTSVINSICHWLLWSA 323 (497)
T ss_dssp CCTTSTTHHHHHHHHHHHHHHH
T ss_pred CCCCCceeehhhhHHHHHHHHH
Confidence 3567778999999999987655
No 7
>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.81 E-value=1.5e+02 Score=22.44 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=16.9
Q ss_pred hhhhhccCc-----cceeeeehhHHH
Q 041315 144 FFTILRRRR-----IVFFQLFYNSIL 164 (285)
Q Consensus 144 vf~VLrKk~-----vsFLHvYHH~~~ 164 (285)
-|.|||+|| +|||=..+|.-.
T Consensus 99 ~F~ILRrkPi~GYDISFLItn~h~e~ 124 (167)
T d1k8kf_ 99 NFFILRRKPVEGYDISFLITNFHTEQ 124 (167)
T ss_dssp TSTTBCSSCCTTCSEEEEEEHHHHHH
T ss_pred hceeeeecCcCCCceeeeehhHHHHh
Confidence 488999974 699988888764
No 8
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding domain {Influenza A virus [TaxId: 11320]}
Probab=3.46 E-value=2.3e+02 Score=16.85 Aligned_cols=14 Identities=7% Similarity=-0.014 Sum_probs=10.1
Q ss_pred chhhHHHHHHHHHH
Q 041315 211 LVVNCQMVLMGCNL 224 (285)
Q Consensus 211 ~iT~lQivQFv~~~ 224 (285)
-||.+|-.|.++-.
T Consensus 34 qitfmqalqlllev 47 (54)
T d1pd3a_ 34 QITFMQALQLLLEV 47 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47888888877643
No 9
>d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14, HRV-14 [TaxId: 12131]}
Probab=3.18 E-value=2.9e+02 Score=23.51 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=20.5
Q ss_pred ccchhhHHHHHhhHHHHHHHHHHHhhh
Q 041315 175 SQSFQVLAILFTTLVCSVVYGYRFWTG 201 (285)
Q Consensus 175 ~~~~~~~~~~~Ns~VH~iMY~YY~l~a 201 (285)
.++|......+||.+|.++..|=++.+
T Consensus 285 lPSG~p~Tsi~NSi~N~i~i~~a~~~~ 311 (460)
T d1xr5a_ 285 MPSGCSGTSIFNSMINNIIIRTLILDA 311 (460)
T ss_dssp CCTTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeeeehhhHHHHHHHHHHHHHH
Confidence 356677899999999999876655443
No 10
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=3.10 E-value=4.6e+02 Score=14.80 Aligned_cols=20 Identities=0% Similarity=-0.072 Sum_probs=16.5
Q ss_pred chhhHHHHHhhHHHHHHHHH
Q 041315 177 SFQVLAILFTTLVCSVVYGY 196 (285)
Q Consensus 177 ~~~~~~~~~Ns~VH~iMY~Y 196 (285)
.|.++|..+-.+-|.+-|.|
T Consensus 17 dGtRvF~~iA~~AH~La~~~ 36 (41)
T d1nkzb_ 17 DGTRVFLGLALVAHFLAFSA 36 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHh
Confidence 56678888889999998876
Done!