BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041323
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 139/471 (29%), Positives = 211/471 (44%), Gaps = 79/471 (16%)
Query: 3 SENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPE 62
S+ H ++P GHLIP + AK++ G +T I+ P S
Sbjct: 4 SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTF------------VIAGEGPPSKA 51
Query: 63 KFNVNLVELPFCSLDHDLPPNTENRELVFGSSTFFGWAVDVAKSAGTTNV-----TFITG 117
+ V L LP LPP SST + + + + +F+ G
Sbjct: 52 QRTV-LDSLPSSISSVFLPPVDLTD---LSSSTRIESRISLTVTRSNPELRKVFDSFVEG 107
Query: 118 GA---------YGTLAY-TSMWFNLP---HRKTNSDEFT----LPGFPERCHFHITQLHK 160
G +GT A+ ++ F++P T ++ + LP E +L +
Sbjct: 108 GRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTE 167
Query: 161 YWRMA---------------DGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGA---LQ 202
+ D DD K++ N + ++ +L T ++EP A LQ
Sbjct: 168 PLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQ 227
Query: 203 WPRNYTKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYIS 262
P K PV+ +GPL+ N+ + K + ++WLD GSVLY+S
Sbjct: 228 EP-GLDKPPVYPVGPLV----------NIGKQEAKQ--TEESECLKWLDNQPLGSVLYVS 274
Query: 263 FGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSER-------LPEGFEE 315
FGS T++ Q ELA+GL S + FLWVIR P G F S LP GF E
Sbjct: 275 FGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLE 334
Query: 316 RIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYN 375
R + K+G ++ WAPQ ++L+H STG FL++CGWNS LES+ G+P+I WP+ AEQ N
Sbjct: 335 RTK--KRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMN 392
Query: 376 SKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMD-EAGKGQEMKAKAEK 425
+ +L E++ A+ G + +V V++ +M+ E GKG K K K
Sbjct: 393 AVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELK 443
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 116/477 (24%), Positives = 196/477 (41%), Gaps = 85/477 (17%)
Query: 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNT-------------- 52
H VM+P GH+ P LAK +H GF IT NT N + L +
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLR-GFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNF 68
Query: 53 ---------------ISCANPNSPEKFNVNLVELPFCSL------DHDLPPNTENRELVF 91
+S P + N ++ P+C L ++PP T
Sbjct: 69 ESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLK-PYCELLTRLNHSTNVPPVT-----CL 122
Query: 92 GSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFNLPHRKTNSDEFTLPG----- 146
S + + A+ NV + + A L N+ H ++ + +P
Sbjct: 123 VSDCCMSFTIQAAEEFELPNVLYFSSSACSLL-------NVMHFRSFVERGIIPFKDESY 175
Query: 147 ------------FPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAE 194
P +F + + + R + +D +F + + +L T
Sbjct: 176 LTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFN 235
Query: 195 DIEPGALQWPRNYTKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPE--KIIEWLDL 252
++E + N + +I P+ P L K + Q + + E + ++WL+
Sbjct: 236 ELESDVI----NALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLES 291
Query: 253 HHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEG 312
PGSV+Y++FGS ++ Q +E A GL KSFLW+IRP + F SE
Sbjct: 292 KEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSE----- 346
Query: 313 FEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQ 372
F I + L+ +W PQ ++L+H S G FL++CGWNS ES+ G+PM+ WP A+Q
Sbjct: 347 FTNEIADRG---LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQ 403
Query: 373 TYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQ 429
+ + + E + +E+ V+ + + VI KG++MK KA ++ ++
Sbjct: 404 PTDCRFICNEWEIGMEIDTNVKREELAKLINEVI-----AGDKGKKMKQKAMELKKK 455
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/470 (24%), Positives = 199/470 (42%), Gaps = 91/470 (19%)
Query: 3 SENEHTVMLPLMAHGHLIPFLALAKQIHRS------TGFKITIANTPLNIQYLQNTISC- 55
++N + +P GHL L AK + T F I P Y+++ ++
Sbjct: 7 NKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQ 66
Query: 56 ----------ANP------NSPEKFNVNLVELPFCSLDHDLPPNTENRELVFGSSTFFGW 99
P SPE + + +E + + N+ + F
Sbjct: 67 PQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVS 126
Query: 100 AVDVAKSAGTTNVTFITGGAYGTLAYTSMWFNLPHRKT-----NSDE----FTLPG---- 146
+DV G + F+T + + S+ +L +R+ +SD +PG
Sbjct: 127 MIDVGNEFGIPSYLFLTS----NVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQ 182
Query: 147 -----FPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGAL 201
P+ C Y+++A+ D + ++ T D+E ++
Sbjct: 183 VPSNVLPDACFNKDGGYIAYYKLAERFRD--------------TKGIIVNTFSDLEQSSI 228
Query: 202 QWPRNYTKL--PVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVL 259
++ + P++ +GPLL + QH + I++WLD SV+
Sbjct: 229 DALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQH---------DLILKWLDEQPDKSVV 279
Query: 260 YISFGSQN-TISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIE 318
++ FGS + SQ E+A+GL+ S FLW + PEGF E +E
Sbjct: 280 FLCFGSMGVSFGPSQIREIALGLKHSGVRFLW----------SNSAEKKVFPEGFLEWME 329
Query: 319 ETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKM 378
+G++ WAPQ+E+L+HK+ G F+S+CGWNS LES+ G+P++ WPI AEQ N+
Sbjct: 330 LEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFR 388
Query: 379 LVEE----MGMAVELTRGVQSTIVGHDVKNVIEMVMDEAG----KGQEMK 420
LV+E +G+ V+ +G + +++ ++ +MD+ K QEMK
Sbjct: 389 LVKEWGVGLGLRVDYRKG-SDVVAAEEIEKGLKDLMDKDSIVHKKVQEMK 437
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 114/470 (24%), Positives = 199/470 (42%), Gaps = 91/470 (19%)
Query: 3 SENEHTVMLPLMAHGHLIPFLALAKQIHRS------TGFKITIANTPLNIQYLQNTISC- 55
++N + +P GHL L AK + T F I P Y+++ ++
Sbjct: 7 NKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQ 66
Query: 56 ----------ANP------NSPEKFNVNLVELPFCSLDHDLPPNTENRELVFGSSTFFGW 99
P SPE + + +E + + N+ + F
Sbjct: 67 PQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVS 126
Query: 100 AVDVAKSAGTTNVTFITGGAYGTLAYTSMWFNLPHRKT-----NSDE----FTLPG---- 146
+DV G + F+T + + S+ +L +R+ +SD +PG
Sbjct: 127 MIDVGNEFGIPSYLFLTS----NVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQ 182
Query: 147 -----FPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGAL 201
P+ C Y+++A+ D + ++ T D+E ++
Sbjct: 183 VPSNVLPDACFNKDGGYIAYYKLAERFRD--------------TKGIIVNTFSDLEQSSI 228
Query: 202 QWPRNYTKL--PVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVL 259
++ + P++ +GPLL + QH + I++WLD SV+
Sbjct: 229 DALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQH---------DLILKWLDEQPDKSVV 279
Query: 260 YISFGSQN-TISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIE 318
++ FGS + SQ E+A+GL+ S FLW + PEGF E +E
Sbjct: 280 FLCFGSMGVSFGPSQIREIALGLKHSGVRFLW----------SNSAEKKVFPEGFLEWME 329
Query: 319 ETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKM 378
+G++ WAPQ+E+L+HK+ G F+S+CGWNS LES+ G+P++ WPI AEQ N+
Sbjct: 330 LEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFR 388
Query: 379 LVEE----MGMAVELTRGVQSTIVGHDVKNVIEMVMDEAG----KGQEMK 420
LV+E +G+ V+ +G + +++ ++ +MD+ K QEMK
Sbjct: 389 LVKEWGVGLGLRVDYRKG-SDVVAAEEIEKGLKDLMDKDSIVHKKVQEMK 437
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 165/390 (42%), Gaps = 61/390 (15%)
Query: 53 ISCANPNSPEKFNVNLVELPFCSLDHDLPPNTENRELVFGSSTFFGWAVDVAKSAGTTNV 112
+S NP P + ++ F + + T + FF + D+A+ V
Sbjct: 83 VSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWV 142
Query: 113 TFITGGAYGTLAYTSMWFNLPHRKTNSDEF-------TLPGFPERCHFHITQLHKYWRMA 165
T G + L T ++ +L KT S E LPGFPE
Sbjct: 143 PLWTAGPHSLL--THVYTDLIREKTGSKEVHDVKSIDVLPGFPEL--------------- 185
Query: 166 DGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPR-NYTKLPVW-TIGPLLPQSY 223
+ D + + +I F + ML K L+ PR N + + TI PL+
Sbjct: 186 -KASDLPEGVIKDIDVPFAT--MLHKMG-------LELPRANAVAINSFATIHPLIENEL 235
Query: 224 LKKSFFNLQQHSGKNPGVNPEK-------IIEWLDLHHPGSVLYISFGSQNTISSSQTME 276
K F L + G P++ +EWLD H SV+YISFGS T +
Sbjct: 236 NSK--FKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTA 293
Query: 277 LAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEIL 336
LA LE F+W RG+ + E+LP+GF ER TK + WAPQ+EIL
Sbjct: 294 LAESLEECGFPFIW--------SFRGDPK-EKLPKGFLER---TKTKGKIVAWAPQVEIL 341
Query: 337 SHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQST 396
H S G FL++ GWNS LE + G+PMI P +Q N+ + + + V + GV
Sbjct: 342 KHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGV--- 398
Query: 397 IVGHDVKNVIEMVMDEAGKGQEMKAKAEKI 426
+ +K +E+ M + KG M+ K K+
Sbjct: 399 LTKESIKKALELTMS-SEKGGIMRQKIVKL 427
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 14/173 (8%)
Query: 221 QSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIG 280
++YL FNL P N ++WL P SV+YISFG+ T ++ + L+
Sbjct: 238 KTYLNIGPFNLITPPPVVP--NTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEA 295
Query: 281 LEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKS 340
LEAS F+W LR + R LPEGF +E+T+ +V WAPQ E+L+H++
Sbjct: 296 LEASRVPFIW--------SLRDKARVH-LPEGF---LEKTRGYGMVVPWAPQAEVLAHEA 343
Query: 341 TGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGV 393
GAF+++CGWNS ES++ G+P+I P +Q N +M+ + + + V + GV
Sbjct: 344 VGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGV 396
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 319 ETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKM 378
E + V W PQL+IL+ S AF+++ G S +E+LS +PM+ P AEQT N++
Sbjct: 302 EVPPNVEVHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAER 359
Query: 379 LVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKI 426
+V E+G+ + R + ++ + V + G + + A ++I
Sbjct: 360 IV-ELGLGRHIPR---DQVTAEKLREAVLAVASDPGVAERLAAVRQEI 403
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 329 WAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVE 388
W PQ ++L H T AF+++ G N E++ G+P +G P+ A+Q N + G AV
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAH-XKARGAAVR 133
Query: 389 LTRGVQSTIVGHDVKNVIEMVMDE 412
+ S+ D+ N ++ V+++
Sbjct: 134 VDFNTXSST---DLLNALKRVIND 154
>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine
pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine, Mercury Derivative
Length = 180
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 294 PPVGFD-LRGEFRSERLPEGFEERIEETKQGLLVRNWAPQL 333
P VG D L+G+FR E + + ER+ ++K +++ + AP +
Sbjct: 60 PIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNM 100
>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|B Chain B, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|C Chain C, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|D Chain D, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|E Chain E, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|F Chain F, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|G Chain G, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|H Chain H, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|I Chain I, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|J Chain J, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|K Chain K, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|L Chain L, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|M Chain M, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|N Chain N, Crystal Structure Of H.Pylori Clpp
pdb|2ZL2|A Chain A, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|B Chain B, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|C Chain C, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|D Chain D, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|E Chain E, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|F Chain F, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|G Chain G, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|H Chain H, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|I Chain I, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|J Chain J, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|K Chain K, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|L Chain L, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|M Chain M, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|N Chain N, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
Length = 196
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 340 STGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVG 399
S GAFL CG SL MI P+ Q S +E + + +G+ ++I+
Sbjct: 99 SMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASD--IEIISNEILRLKGLMNSILA 156
Query: 400 HDVKNVIEMVMDEAGKGQEMKAKAEK 425
+ +E + + + M AK K
Sbjct: 157 QNSGQSLEQIAKDTDRDFYMSAKEAK 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,679,143
Number of Sequences: 62578
Number of extensions: 567274
Number of successful extensions: 1417
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1396
Number of HSP's gapped (non-prelim): 14
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)