Query 041323
Match_columns 433
No_of_seqs 184 out of 1713
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:59:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02670 transferase, transfer 100.0 6.7E-65 1.5E-69 507.3 40.7 411 1-433 1-449 (472)
2 PLN02764 glycosyltransferase f 100.0 4.6E-64 1E-68 497.5 40.2 394 1-432 1-428 (453)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 5.7E-64 1.2E-68 503.7 40.9 404 4-432 8-450 (477)
4 PLN02173 UDP-glucosyl transfer 100.0 2.4E-63 5.2E-68 493.8 39.7 392 1-432 1-427 (449)
5 PLN02534 UDP-glycosyltransfera 100.0 4.1E-63 8.9E-68 496.7 40.5 413 4-432 7-465 (491)
6 PLN02992 coniferyl-alcohol glu 100.0 5.1E-63 1.1E-67 494.2 40.1 399 1-432 1-446 (481)
7 PLN02208 glycosyltransferase f 100.0 6E-63 1.3E-67 491.9 38.9 387 4-432 3-422 (442)
8 PLN00414 glycosyltransferase f 100.0 9.5E-63 2.1E-67 491.0 39.7 387 4-432 3-423 (446)
9 PLN02555 limonoid glucosyltran 100.0 1.6E-62 3.5E-67 491.8 39.7 406 1-432 1-448 (480)
10 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.6E-62 3.4E-67 490.0 39.1 385 4-432 6-429 (451)
11 PLN03007 UDP-glucosyltransfera 100.0 3.5E-62 7.7E-67 494.5 41.0 415 1-432 1-459 (482)
12 PLN03004 UDP-glycosyltransfera 100.0 3.7E-62 8E-67 485.6 38.6 401 5-432 3-440 (451)
13 PLN03015 UDP-glucosyl transfer 100.0 1.1E-61 2.4E-66 481.9 39.3 400 5-432 3-447 (470)
14 PLN00164 glucosyltransferase; 100.0 1.1E-61 2.5E-66 488.6 39.1 401 5-432 3-452 (480)
15 PLN02562 UDP-glycosyltransfera 100.0 4.4E-61 9.6E-66 480.8 39.1 391 1-432 1-429 (448)
16 PLN02152 indole-3-acetate beta 100.0 6.1E-61 1.3E-65 477.3 38.2 393 5-432 3-435 (455)
17 PLN02210 UDP-glucosyl transfer 100.0 1.2E-60 2.7E-65 478.2 39.2 395 3-432 6-434 (456)
18 PLN02207 UDP-glycosyltransfera 100.0 6.9E-60 1.5E-64 470.8 38.0 397 5-432 3-444 (468)
19 PLN02448 UDP-glycosyltransfera 100.0 5.7E-59 1.2E-63 468.8 38.7 391 4-432 9-436 (459)
20 PLN02554 UDP-glycosyltransfera 100.0 4.4E-59 9.5E-64 471.4 36.8 400 5-432 2-457 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 1.7E-57 3.7E-62 459.1 37.8 401 4-432 2-451 (475)
22 PF00201 UDPGT: UDP-glucoronos 100.0 1.9E-47 4.2E-52 392.6 6.9 364 7-433 2-426 (500)
23 PHA03392 egt ecdysteroid UDP-g 100.0 1.8E-44 3.9E-49 366.1 26.2 368 7-433 22-449 (507)
24 KOG1192 UDP-glucuronosyl and U 100.0 5.7E-41 1.2E-45 344.4 19.7 385 5-433 5-439 (496)
25 cd03784 GT1_Gtf_like This fami 100.0 4.8E-40 1E-44 328.6 22.9 345 6-431 1-386 (401)
26 TIGR01426 MGT glycosyltransfer 100.0 5.4E-39 1.2E-43 320.0 29.1 346 11-432 1-375 (392)
27 COG1819 Glycosyl transferases, 100.0 1.4E-36 3.1E-41 300.4 21.2 349 5-432 1-384 (406)
28 PRK12446 undecaprenyldiphospho 99.9 5.8E-23 1.3E-27 200.7 24.4 175 210-426 154-336 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 4E-20 8.8E-25 179.0 24.6 151 255-427 182-339 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.8 1.8E-18 3.8E-23 167.5 23.4 282 6-409 1-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.7 3.8E-16 8.3E-21 151.3 24.4 124 256-413 188-315 (321)
32 PRK00726 murG undecaprenyldiph 99.7 7.1E-15 1.5E-19 144.7 25.9 150 255-427 182-339 (357)
33 cd03785 GT1_MurG MurG is an N- 99.7 1.1E-14 2.5E-19 142.6 25.6 156 253-427 178-339 (350)
34 TIGR01133 murG undecaprenyldip 99.6 1E-12 2.2E-17 128.7 25.9 90 331-426 243-335 (348)
35 PF04101 Glyco_tran_28_C: Glyc 99.5 5.2E-16 1.1E-20 135.8 -1.6 138 258-414 1-146 (167)
36 TIGR00215 lpxB lipid-A-disacch 99.5 4.7E-13 1E-17 132.8 16.0 165 247-431 182-370 (385)
37 PRK13609 diacylglycerol glucos 99.5 4E-12 8.7E-17 126.2 20.2 151 254-427 200-353 (380)
38 TIGR03590 PseG pseudaminic aci 99.4 1.2E-11 2.5E-16 117.3 19.8 105 257-378 171-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.3 2.8E-11 6.2E-16 120.1 16.8 90 333-429 256-358 (380)
40 PF03033 Glyco_transf_28: Glyc 99.3 1.1E-12 2.3E-17 111.1 2.5 98 8-121 1-134 (139)
41 COG4671 Predicted glycosyl tra 99.3 1.3E-09 2.8E-14 101.8 22.5 135 257-411 220-364 (400)
42 PRK13608 diacylglycerol glucos 99.1 2.4E-09 5.2E-14 106.7 16.2 150 254-427 200-353 (391)
43 PLN02605 monogalactosyldiacylg 99.0 1.1E-08 2.4E-13 101.7 17.6 160 245-427 195-363 (382)
44 cd03814 GT1_like_2 This family 99.0 3.5E-07 7.5E-12 89.1 27.0 142 257-427 197-347 (364)
45 PLN02871 UDP-sulfoquinovose:DA 99.0 8.9E-07 1.9E-11 90.4 30.4 142 258-428 264-416 (465)
46 COG3980 spsG Spore coat polysa 98.9 6.1E-07 1.3E-11 81.8 22.7 142 258-425 160-302 (318)
47 cd03794 GT1_wbuB_like This fam 98.9 4.2E-06 9.1E-11 81.8 28.8 150 256-428 219-381 (394)
48 cd03817 GT1_UGDG_like This fam 98.8 1.1E-05 2.4E-10 78.5 27.9 148 257-430 202-361 (374)
49 cd03800 GT1_Sucrose_synthase T 98.7 1.7E-05 3.7E-10 78.6 27.9 95 321-427 282-383 (398)
50 cd03808 GT1_cap1E_like This fa 98.7 9.2E-06 2E-10 78.4 24.4 149 256-426 187-343 (359)
51 cd03795 GT1_like_4 This family 98.7 3.4E-05 7.3E-10 75.2 28.4 147 258-429 192-349 (357)
52 cd03816 GT1_ALG1_like This fam 98.7 8.9E-05 1.9E-09 74.6 31.0 93 322-428 294-400 (415)
53 cd03823 GT1_ExpE7_like This fa 98.6 2.7E-05 5.8E-10 75.5 26.5 145 256-426 190-343 (359)
54 PRK10307 putative glycosyl tra 98.6 0.0002 4.2E-09 71.9 32.6 97 322-428 284-389 (412)
55 cd03818 GT1_ExpC_like This fam 98.6 3.7E-05 8E-10 76.8 27.2 99 321-429 280-383 (396)
56 cd04962 GT1_like_5 This family 98.6 4.6E-05 1E-09 74.9 26.8 93 322-426 253-350 (371)
57 PRK05749 3-deoxy-D-manno-octul 98.6 2.5E-05 5.3E-10 78.9 24.8 87 334-429 315-405 (425)
58 cd03820 GT1_amsD_like This fam 98.5 0.00018 3.9E-09 69.0 28.1 148 258-430 179-337 (348)
59 TIGR03492 conserved hypothetic 98.5 2.1E-06 4.5E-11 85.5 14.0 144 256-420 205-372 (396)
60 cd03825 GT1_wcfI_like This fam 98.5 0.00015 3.3E-09 70.8 27.1 95 321-427 243-345 (365)
61 cd03821 GT1_Bme6_like This fam 98.4 0.0002 4.3E-09 69.6 26.6 94 321-426 261-359 (375)
62 COG1519 KdtA 3-deoxy-D-manno-o 98.4 7.8E-05 1.7E-09 72.4 22.8 319 7-430 50-404 (419)
63 cd03801 GT1_YqgM_like This fam 98.4 0.00016 3.4E-09 69.8 25.6 92 321-424 255-353 (374)
64 cd03805 GT1_ALG2_like This fam 98.4 0.00027 5.9E-09 70.1 27.8 94 321-427 279-379 (392)
65 TIGR03449 mycothiol_MshA UDP-N 98.4 0.00036 7.8E-09 69.7 26.6 95 322-428 283-384 (405)
66 cd03819 GT1_WavL_like This fam 98.3 0.00058 1.2E-08 66.5 27.0 155 256-429 184-348 (355)
67 KOG3349 Predicted glycosyltran 98.3 6E-06 1.3E-10 68.1 9.2 114 258-386 5-129 (170)
68 cd03822 GT1_ecORF704_like This 98.3 0.00061 1.3E-08 66.3 24.9 98 321-429 246-351 (366)
69 cd03811 GT1_WabH_like This fam 98.2 0.00059 1.3E-08 65.4 24.0 143 256-421 188-341 (353)
70 TIGR02149 glgA_Coryne glycogen 98.2 0.001 2.2E-08 65.9 25.5 95 323-427 261-367 (388)
71 cd03796 GT1_PIG-A_like This fa 98.1 0.0016 3.5E-08 65.1 24.4 131 256-413 192-334 (398)
72 TIGR02472 sucr_P_syn_N sucrose 98.0 0.0038 8.3E-08 63.3 26.1 95 322-426 317-420 (439)
73 cd03798 GT1_wlbH_like This fam 98.0 0.0069 1.5E-07 58.4 26.7 136 257-414 202-346 (377)
74 cd03807 GT1_WbnK_like This fam 98.0 0.0096 2.1E-07 57.4 27.1 93 322-428 251-348 (365)
75 cd04955 GT1_like_6 This family 98.0 0.0023 5E-08 62.4 22.6 91 321-427 247-345 (363)
76 cd04951 GT1_WbdM_like This fam 98.0 0.002 4.4E-08 62.7 22.1 129 257-412 188-326 (360)
77 TIGR02468 sucrsPsyn_pln sucros 97.9 0.0045 9.7E-08 67.8 25.4 97 322-428 548-653 (1050)
78 cd03812 GT1_CapH_like This fam 97.9 0.0075 1.6E-07 58.7 24.6 141 257-423 192-342 (358)
79 cd04946 GT1_AmsK_like This fam 97.8 0.00043 9.4E-09 69.4 14.7 99 321-428 288-393 (407)
80 cd03786 GT1_UDP-GlcNAc_2-Epime 97.8 0.00027 5.8E-09 69.5 13.0 133 256-413 198-338 (363)
81 TIGR03088 stp2 sugar transfera 97.8 0.0083 1.8E-07 59.2 23.0 94 322-427 255-353 (374)
82 PLN02275 transferase, transfer 97.7 0.063 1.4E-06 53.1 28.1 75 322-410 286-371 (371)
83 cd03802 GT1_AviGT4_like This f 97.7 0.0058 1.3E-07 58.9 20.3 128 259-413 173-309 (335)
84 cd05844 GT1_like_7 Glycosyltra 97.7 0.00063 1.4E-08 66.7 13.6 95 321-427 244-351 (367)
85 PLN02846 digalactosyldiacylgly 97.7 0.029 6.3E-07 56.8 25.2 74 325-413 287-364 (462)
86 PF00534 Glycos_transf_1: Glyc 97.7 0.0011 2.4E-08 57.6 13.3 93 321-425 72-171 (172)
87 PF04007 DUF354: Protein of un 97.7 0.042 9.1E-07 53.2 25.1 139 242-411 166-309 (335)
88 PRK01021 lpxB lipid-A-disaccha 97.6 0.013 2.7E-07 60.5 21.4 193 208-431 379-590 (608)
89 COG5017 Uncharacterized conser 97.6 0.0016 3.4E-08 53.1 11.7 126 259-410 2-140 (161)
90 PRK15427 colanic acid biosynth 97.6 0.002 4.3E-08 64.6 15.5 95 321-427 278-386 (406)
91 PRK14089 ipid-A-disaccharide s 97.6 0.0011 2.3E-08 64.6 12.5 89 332-430 229-332 (347)
92 cd03804 GT1_wbaZ_like This fam 97.5 0.00066 1.4E-08 66.4 10.9 140 259-426 197-341 (351)
93 cd03799 GT1_amsK_like This is 97.5 0.0028 6E-08 61.6 15.0 146 257-427 179-342 (355)
94 TIGR02470 sucr_synth sucrose s 97.5 0.095 2.1E-06 56.2 26.7 66 350-425 657-726 (784)
95 PF13844 Glyco_transf_41: Glyc 97.5 0.0008 1.7E-08 67.4 10.2 150 255-425 283-443 (468)
96 TIGR00236 wecB UDP-N-acetylglu 97.4 0.0037 7.9E-08 61.7 14.1 85 321-419 254-341 (365)
97 PF02684 LpxB: Lipid-A-disacch 97.3 0.017 3.7E-07 56.8 17.8 190 208-430 151-358 (373)
98 PRK15484 lipopolysaccharide 1, 97.3 0.0071 1.5E-07 60.0 15.4 94 321-426 256-357 (380)
99 TIGR03087 stp1 sugar transfera 97.2 0.0063 1.4E-07 60.7 14.1 93 321-427 279-377 (397)
100 cd04949 GT1_gtfA_like This fam 97.2 0.0032 6.9E-08 62.1 11.8 101 321-430 260-363 (372)
101 PRK09922 UDP-D-galactose:(gluc 97.2 0.0029 6.4E-08 62.2 11.4 147 258-429 181-343 (359)
102 cd03813 GT1_like_3 This family 97.2 0.011 2.4E-07 60.6 15.1 98 321-428 353-458 (475)
103 PLN02949 transferase, transfer 97.1 0.42 9.1E-06 48.8 25.6 97 321-429 334-440 (463)
104 PF13692 Glyco_trans_1_4: Glyc 97.1 0.0022 4.7E-08 53.3 7.4 80 321-412 52-135 (135)
105 PLN00142 sucrose synthase 97.0 0.31 6.8E-06 52.5 24.2 66 351-426 681-750 (815)
106 cd03806 GT1_ALG11_like This fa 96.9 0.22 4.9E-06 50.1 21.9 96 321-430 304-411 (419)
107 cd03809 GT1_mtfB_like This fam 96.8 0.011 2.4E-07 57.3 11.1 96 321-428 252-352 (365)
108 PF02350 Epimerase_2: UDP-N-ac 96.8 0.02 4.4E-07 56.0 12.6 133 254-413 178-319 (346)
109 PRK15179 Vi polysaccharide bio 96.5 0.1 2.2E-06 55.6 16.5 97 321-427 573-674 (694)
110 TIGR02918 accessory Sec system 96.5 0.067 1.5E-06 55.1 14.7 102 322-430 376-484 (500)
111 PLN02501 digalactosyldiacylgly 96.4 1.6 3.5E-05 46.2 24.1 76 323-413 602-682 (794)
112 KOG4626 O-linked N-acetylgluco 96.2 0.039 8.5E-07 56.2 10.4 125 254-391 756-889 (966)
113 COG3914 Spy Predicted O-linked 96.2 0.08 1.7E-06 53.7 12.3 124 254-390 427-561 (620)
114 PRK09814 beta-1,6-galactofuran 95.9 0.036 7.9E-07 53.9 8.8 98 321-432 206-318 (333)
115 cd03792 GT1_Trehalose_phosphor 95.8 0.41 8.9E-06 47.1 15.8 93 321-427 251-352 (372)
116 cd04950 GT1_like_1 Glycosyltra 95.7 0.27 5.8E-06 48.6 14.3 79 321-413 253-341 (373)
117 PHA01633 putative glycosyl tra 95.6 0.29 6.3E-06 47.5 13.5 101 321-430 200-324 (335)
118 TIGR03568 NeuC_NnaA UDP-N-acet 95.2 0.53 1.1E-05 46.5 14.2 143 244-411 189-338 (365)
119 PRK10017 colanic acid biosynth 94.9 0.68 1.5E-05 46.6 14.1 172 246-430 224-411 (426)
120 TIGR02095 glgA glycogen/starch 94.9 0.36 7.9E-06 49.4 12.6 148 258-424 292-453 (473)
121 PRK14098 glycogen synthase; Pr 94.3 0.48 1E-05 48.7 11.7 132 258-410 308-449 (489)
122 PRK00654 glgA glycogen synthas 94.1 0.84 1.8E-05 46.6 13.1 147 258-423 283-442 (466)
123 PF06722 DUF1205: Protein of u 94.1 0.07 1.5E-06 41.7 3.9 53 243-295 27-84 (97)
124 COG0763 LpxB Lipid A disacchar 94.0 0.81 1.8E-05 44.6 11.7 190 209-432 155-364 (381)
125 PF13524 Glyco_trans_1_2: Glyc 94.0 0.3 6.4E-06 37.5 7.3 69 347-427 9-77 (92)
126 cd03791 GT1_Glycogen_synthase_ 93.8 0.53 1.2E-05 48.1 10.9 135 258-411 297-441 (476)
127 PRK15490 Vi polysaccharide bio 93.0 2.2 4.7E-05 44.2 13.4 64 321-391 454-522 (578)
128 PHA01630 putative group 1 glyc 92.4 2.6 5.7E-05 40.9 12.8 41 328-368 196-241 (331)
129 PF06258 Mito_fiss_Elm1: Mitoc 90.7 10 0.00022 36.4 14.7 60 330-391 220-282 (311)
130 PRK14099 glycogen synthase; Pr 88.4 5.8 0.00013 40.8 11.8 96 321-424 349-459 (485)
131 PF13579 Glyco_trans_4_4: Glyc 87.7 0.85 1.8E-05 38.1 4.5 42 22-74 7-48 (160)
132 PRK10125 putative glycosyl tra 85.8 9.1 0.0002 38.3 11.4 115 259-407 243-366 (405)
133 COG4370 Uncharacterized protei 85.0 5.2 0.00011 37.8 8.2 83 328-420 301-387 (412)
134 PRK02261 methylaspartate mutas 84.9 2.4 5.2E-05 35.4 5.6 46 5-51 3-48 (137)
135 cd01635 Glycosyltransferase_GT 84.8 7.7 0.00017 34.2 9.5 26 15-41 12-37 (229)
136 TIGR03713 acc_sec_asp1 accesso 84.1 1.2 2.6E-05 46.1 4.2 92 322-430 409-506 (519)
137 PLN02939 transferase, transfer 83.9 26 0.00056 38.9 14.1 94 322-423 837-946 (977)
138 TIGR02919 accessory Sec system 83.7 29 0.00063 35.1 13.8 90 322-426 328-422 (438)
139 PF13477 Glyco_trans_4_2: Glyc 83.4 3 6.4E-05 34.4 5.7 51 7-72 1-51 (139)
140 PLN02316 synthase/transferase 81.5 48 0.0011 37.3 15.3 84 322-412 900-998 (1036)
141 PF10093 DUF2331: Uncharacteri 80.0 65 0.0014 31.8 20.5 40 323-365 245-287 (374)
142 TIGR02193 heptsyl_trn_I lipopo 79.5 19 0.00041 34.5 10.5 142 248-410 171-319 (319)
143 PF00731 AIRC: AIR carboxylase 78.8 27 0.00059 29.6 9.8 139 258-432 2-148 (150)
144 cd02067 B12-binding B12 bindin 78.6 3.9 8.5E-05 32.9 4.7 42 7-49 1-42 (119)
145 COG0381 WecB UDP-N-acetylgluco 76.6 5.7 0.00012 38.9 5.7 77 323-413 263-342 (383)
146 PRK02797 4-alpha-L-fucosyltran 72.2 76 0.0017 30.4 11.8 134 259-409 147-291 (322)
147 cd03789 GT1_LPS_heptosyltransf 71.2 34 0.00075 32.0 9.7 44 7-51 1-46 (279)
148 PF02951 GSH-S_N: Prokaryotic 68.7 7.4 0.00016 31.6 3.8 39 6-45 1-42 (119)
149 PRK12446 undecaprenyldiphospho 67.9 27 0.00059 34.2 8.5 99 257-366 3-120 (352)
150 cd03793 GT1_Glycogen_synthase_ 67.8 20 0.00043 37.4 7.6 96 332-430 468-571 (590)
151 TIGR02201 heptsyl_trn_III lipo 66.8 71 0.0015 30.9 11.2 45 7-51 1-46 (344)
152 COG3660 Predicted nucleoside-d 66.7 72 0.0016 29.8 10.0 94 258-366 164-271 (329)
153 PF02441 Flavoprotein: Flavopr 66.5 8 0.00017 31.8 3.8 45 6-52 1-45 (129)
154 PF13439 Glyco_transf_4: Glyco 64.6 7.4 0.00016 32.8 3.4 30 15-45 11-40 (177)
155 PF07429 Glyco_transf_56: 4-al 64.3 1.5E+02 0.0032 29.0 13.0 137 258-411 185-332 (360)
156 KOG2941 Beta-1,4-mannosyltrans 64.2 1.5E+02 0.0032 29.0 27.2 148 255-428 253-425 (444)
157 PRK02155 ppnK NAD(+)/NADH kina 63.8 50 0.0011 31.4 9.1 52 342-413 65-120 (291)
158 PRK00654 glgA glycogen synthas 63.4 10 0.00022 38.7 4.6 37 6-43 1-43 (466)
159 TIGR02370 pyl_corrinoid methyl 62.7 18 0.00039 32.2 5.6 47 4-51 83-129 (197)
160 TIGR02400 trehalose_OtsA alpha 62.7 29 0.00063 35.4 7.7 72 327-413 341-423 (456)
161 PF05159 Capsule_synth: Capsul 62.5 83 0.0018 29.3 10.4 43 323-368 184-226 (269)
162 PF02310 B12-binding: B12 bind 62.0 21 0.00046 28.5 5.5 42 6-48 1-42 (121)
163 PRK10422 lipopolysaccharide co 60.2 64 0.0014 31.4 9.5 51 1-51 1-52 (352)
164 cd02070 corrinoid_protein_B12- 60.0 20 0.00044 31.9 5.4 45 5-50 82-126 (201)
165 TIGR00725 conserved hypothetic 58.6 53 0.0012 28.1 7.6 39 330-368 82-123 (159)
166 COG0438 RfaG Glycosyltransfera 57.7 1.6E+02 0.0034 27.1 15.0 80 322-413 257-343 (381)
167 PF12146 Hydrolase_4: Putative 57.0 22 0.00049 26.3 4.4 35 6-41 16-50 (79)
168 PRK06249 2-dehydropantoate 2-r 56.5 28 0.00061 33.4 6.2 44 1-51 1-44 (313)
169 PRK10964 ADP-heptose:LPS hepto 56.4 96 0.0021 29.7 9.9 46 6-51 1-47 (322)
170 TIGR00715 precor6x_red precorr 55.2 16 0.00034 34.1 4.0 90 6-114 1-98 (256)
171 TIGR01470 cysG_Nterm siroheme 55.1 1.3E+02 0.0029 26.8 9.9 147 256-431 10-163 (205)
172 PRK04885 ppnK inorganic polyph 54.9 27 0.00058 32.7 5.5 26 342-367 37-68 (265)
173 cd01840 SGNH_hydrolase_yrhL_li 54.9 42 0.0009 28.1 6.3 47 246-293 41-87 (150)
174 PRK14099 glycogen synthase; Pr 54.2 20 0.00044 36.8 5.0 40 1-43 1-46 (485)
175 cd07039 TPP_PYR_POX Pyrimidine 54.1 1.2E+02 0.0027 25.9 9.2 25 343-367 66-96 (164)
176 PRK14098 glycogen synthase; Pr 54.1 20 0.00044 36.8 5.0 42 1-43 1-48 (489)
177 TIGR02398 gluc_glyc_Psyn gluco 53.7 2.7E+02 0.0058 28.7 13.6 91 324-430 364-464 (487)
178 PLN03063 alpha,alpha-trehalose 53.4 95 0.002 34.2 10.1 70 329-411 363-442 (797)
179 cd02069 methionine_synthase_B1 53.2 32 0.0007 31.0 5.6 47 4-51 87-133 (213)
180 KOG0853 Glycosyltransferase [C 52.9 7.9 0.00017 39.4 1.7 68 346-422 376-443 (495)
181 TIGR01162 purE phosphoribosyla 52.8 1.5E+02 0.0032 25.4 11.0 29 262-292 4-32 (156)
182 COG1817 Uncharacterized protei 52.4 2.2E+02 0.0048 27.3 19.0 88 13-118 7-114 (346)
183 TIGR02095 glgA glycogen/starch 52.4 20 0.00044 36.5 4.7 38 6-44 1-44 (473)
184 PRK08305 spoVFB dipicolinate s 51.1 32 0.0007 30.6 5.1 43 5-49 5-48 (196)
185 cd07025 Peptidase_S66 LD-Carbo 50.8 34 0.00074 32.3 5.6 75 269-370 46-122 (282)
186 COG0041 PurE Phosphoribosylcar 50.3 1.6E+02 0.0034 25.0 11.0 139 258-432 4-150 (162)
187 cd02071 MM_CoA_mut_B12_BD meth 50.0 35 0.00075 27.6 4.8 42 7-49 1-42 (122)
188 PF01075 Glyco_transf_9: Glyco 49.6 58 0.0012 29.7 6.9 97 255-366 104-208 (247)
189 COG2910 Putative NADH-flavin r 49.2 21 0.00046 31.4 3.5 31 7-42 2-32 (211)
190 cd03788 GT1_TPS Trehalose-6-Ph 49.0 25 0.00055 35.8 4.7 73 326-413 345-428 (460)
191 smart00851 MGS MGS-like domain 48.6 63 0.0014 24.4 5.8 27 22-51 2-28 (90)
192 TIGR02195 heptsyl_trn_II lipop 48.3 1.4E+02 0.0031 28.6 9.7 45 7-51 1-46 (334)
193 COG0801 FolK 7,8-dihydro-6-hyd 47.0 41 0.0009 28.8 4.9 35 258-292 3-37 (160)
194 PLN02470 acetolactate synthase 46.2 1.8E+02 0.004 30.6 10.8 28 340-367 76-109 (585)
195 PRK06718 precorrin-2 dehydroge 46.2 1.1E+02 0.0024 27.3 7.8 144 256-431 11-163 (202)
196 PRK10422 lipopolysaccharide co 46.2 28 0.00061 33.9 4.4 99 256-366 183-287 (352)
197 PF06506 PrpR_N: Propionate ca 46.0 39 0.00084 29.4 4.8 70 337-411 31-123 (176)
198 PRK02006 murD UDP-N-acetylmura 45.5 1.1E+02 0.0024 31.5 8.8 33 5-43 7-39 (498)
199 PLN02948 phosphoribosylaminoim 45.1 3E+02 0.0065 29.1 12.0 34 6-45 23-56 (577)
200 cd01635 Glycosyltransferase_GT 44.9 30 0.00066 30.2 4.1 48 321-370 160-215 (229)
201 PRK06371 translation initiatio 44.8 46 0.00099 32.2 5.4 20 98-117 239-258 (329)
202 COG2185 Sbm Methylmalonyl-CoA 44.4 45 0.00097 28.0 4.6 42 4-46 11-52 (143)
203 PRK10916 ADP-heptose:LPS hepto 44.4 96 0.0021 30.1 7.9 46 6-51 1-47 (348)
204 cd07062 Peptidase_S66_mccF_lik 44.3 45 0.00097 32.0 5.3 74 270-370 51-126 (308)
205 PRK14077 pnk inorganic polypho 44.0 46 0.001 31.6 5.3 52 342-413 66-121 (287)
206 TIGR00524 eIF-2B_rel eIF-2B al 42.4 40 0.00087 32.3 4.6 22 98-119 221-242 (303)
207 PF04413 Glycos_transf_N: 3-De 42.2 23 0.00049 31.3 2.7 95 7-116 22-126 (186)
208 COG0771 MurD UDP-N-acetylmuram 42.0 1.6E+02 0.0036 29.8 9.0 35 5-45 7-41 (448)
209 KOG2836 Protein tyrosine phosp 41.7 1.4E+02 0.003 24.7 6.8 62 4-84 15-78 (173)
210 PRK02649 ppnK inorganic polyph 41.6 47 0.001 31.8 5.0 53 341-413 69-125 (305)
211 PLN02316 synthase/transferase 41.6 45 0.00099 37.5 5.4 40 4-44 586-631 (1036)
212 PF04127 DFP: DNA / pantothena 41.5 28 0.0006 30.7 3.2 37 7-44 5-53 (185)
213 PRK05720 mtnA methylthioribose 41.2 51 0.0011 32.2 5.2 21 98-118 249-269 (344)
214 PRK07313 phosphopantothenoylcy 40.7 44 0.00095 29.3 4.3 43 7-51 3-45 (182)
215 COG1484 DnaC DNA replication p 40.5 40 0.00087 31.3 4.3 45 7-52 107-151 (254)
216 PRK08334 translation initiatio 40.5 62 0.0013 31.7 5.6 19 98-116 262-280 (356)
217 PF05225 HTH_psq: helix-turn-h 40.2 47 0.001 21.7 3.3 26 398-426 1-26 (45)
218 TIGR00512 salvage_mtnA S-methy 39.9 54 0.0012 31.8 5.1 21 98-118 249-269 (331)
219 PRK08335 translation initiatio 39.2 80 0.0017 29.8 6.0 22 97-118 200-221 (275)
220 PF02571 CbiJ: Precorrin-6x re 39.1 48 0.001 30.8 4.5 92 6-114 1-99 (249)
221 PRK07313 phosphopantothenoylcy 38.7 2.7E+02 0.0058 24.4 12.0 54 357-411 108-179 (182)
222 COG2159 Predicted metal-depend 38.7 1.6E+02 0.0035 28.0 8.1 94 243-356 115-210 (293)
223 PRK13982 bifunctional SbtC-lik 38.6 51 0.0011 33.7 4.9 53 4-71 255-319 (475)
224 PF12000 Glyco_trans_4_3: Gkyc 38.2 1.6E+02 0.0034 25.6 7.3 27 90-116 69-96 (171)
225 PRK06732 phosphopantothenate-- 38.2 38 0.00082 30.9 3.6 19 23-42 30-48 (229)
226 COG0859 RfaF ADP-heptose:LPS h 38.2 2.1E+02 0.0046 27.6 9.1 46 6-51 2-48 (334)
227 PRK12921 2-dehydropantoate 2-r 37.6 51 0.0011 31.2 4.6 40 6-51 1-40 (305)
228 PRK01911 ppnK inorganic polyph 37.4 64 0.0014 30.7 5.1 52 342-413 66-121 (292)
229 PRK05772 translation initiatio 37.3 75 0.0016 31.2 5.7 20 99-118 271-290 (363)
230 PRK08057 cobalt-precorrin-6x r 37.3 53 0.0012 30.4 4.5 90 6-115 3-99 (248)
231 PRK14106 murD UDP-N-acetylmura 37.0 2E+02 0.0043 29.0 9.1 33 5-43 5-37 (450)
232 PRK04539 ppnK inorganic polyph 36.5 63 0.0014 30.8 4.9 52 342-413 70-125 (296)
233 PRK04148 hypothetical protein; 36.2 94 0.002 25.8 5.3 89 5-117 17-111 (134)
234 TIGR01082 murC UDP-N-acetylmur 35.9 1.6E+02 0.0035 29.7 8.2 30 7-41 1-30 (448)
235 PRK06372 translation initiatio 35.9 88 0.0019 29.1 5.6 69 24-117 125-194 (253)
236 cd02065 B12-binding_like B12 b 35.8 77 0.0017 25.2 4.9 43 7-50 1-43 (125)
237 PRK13236 nitrogenase reductase 35.8 66 0.0014 30.6 5.0 42 1-43 1-43 (296)
238 PRK11199 tyrA bifunctional cho 35.6 82 0.0018 31.1 5.8 33 5-43 98-131 (374)
239 PF06180 CbiK: Cobalt chelatas 35.4 73 0.0016 29.8 5.1 37 258-294 3-42 (262)
240 PF01210 NAD_Gly3P_dh_N: NAD-d 35.0 38 0.00083 28.7 3.0 32 7-44 1-32 (157)
241 PF01975 SurE: Survival protei 34.9 37 0.00081 30.2 3.0 41 6-48 1-41 (196)
242 PF05014 Nuc_deoxyrib_tr: Nucl 34.9 51 0.0011 26.1 3.5 33 336-368 59-97 (113)
243 cd03412 CbiK_N Anaerobic cobal 34.9 72 0.0016 26.1 4.5 37 257-293 2-40 (127)
244 PF02374 ArsA_ATPase: Anion-tr 34.8 65 0.0014 30.9 4.8 41 6-47 1-42 (305)
245 PRK03372 ppnK inorganic polyph 34.6 70 0.0015 30.7 4.9 52 342-413 74-129 (306)
246 cd07035 TPP_PYR_POX_like Pyrim 34.5 2.7E+02 0.0058 23.1 10.4 26 343-368 62-93 (155)
247 COG0300 DltE Short-chain dehyd 34.4 85 0.0019 29.4 5.3 45 1-51 1-45 (265)
248 PRK00421 murC UDP-N-acetylmura 33.9 1.9E+02 0.004 29.4 8.3 31 6-42 8-39 (461)
249 cd01424 MGS_CPS_II Methylglyox 33.7 1.8E+02 0.0038 22.8 6.5 80 17-113 10-100 (110)
250 PRK01185 ppnK inorganic polyph 33.6 79 0.0017 29.7 5.0 52 342-413 54-106 (271)
251 PF05693 Glycogen_syn: Glycoge 33.5 1E+02 0.0022 32.5 6.1 99 331-430 462-566 (633)
252 cd03784 GT1_Gtf_like This fami 33.4 2.8E+02 0.006 27.2 9.4 35 258-294 3-37 (401)
253 PRK01710 murD UDP-N-acetylmura 33.4 1.9E+02 0.0042 29.3 8.3 31 6-42 15-45 (458)
254 TIGR01081 mpl UDP-N-acetylmura 33.3 1.8E+02 0.0039 29.4 8.0 30 8-42 2-31 (448)
255 PRK10916 ADP-heptose:LPS hepto 33.3 67 0.0015 31.2 4.8 99 255-366 179-286 (348)
256 PRK03501 ppnK inorganic polyph 32.8 87 0.0019 29.3 5.1 53 342-413 41-98 (264)
257 PRK03378 ppnK inorganic polyph 32.7 77 0.0017 30.2 4.9 52 342-413 65-120 (292)
258 PRK07454 short chain dehydroge 32.6 85 0.0018 28.3 5.1 38 1-42 1-38 (241)
259 PRK14075 pnk inorganic polypho 31.9 94 0.002 28.9 5.2 52 342-413 43-95 (256)
260 PF08030 NAD_binding_6: Ferric 31.8 31 0.00068 28.9 1.9 39 257-295 3-46 (156)
261 TIGR01361 DAHP_synth_Bsub phos 31.7 4.3E+02 0.0093 24.6 13.1 41 247-295 102-142 (260)
262 PF04909 Amidohydro_2: Amidohy 31.5 2.2E+02 0.0049 25.8 7.9 162 243-426 87-270 (273)
263 PLN02939 transferase, transfer 31.5 81 0.0018 35.2 5.3 40 4-44 480-525 (977)
264 TIGR00511 ribulose_e2b2 ribose 31.1 1.1E+02 0.0023 29.3 5.6 22 97-118 206-227 (301)
265 PF02702 KdpD: Osmosensitive K 31.0 1.1E+02 0.0023 27.5 5.0 41 4-45 4-44 (211)
266 PF14626 RNase_Zc3h12a_2: Zc3h 30.9 48 0.001 26.7 2.6 32 19-51 9-40 (122)
267 cd07038 TPP_PYR_PDC_IPDC_like 30.8 97 0.0021 26.4 4.8 25 343-367 62-92 (162)
268 PF08323 Glyco_transf_5: Starc 30.7 39 0.00085 31.1 2.5 24 20-44 20-43 (245)
269 COG1737 RpiR Transcriptional r 30.7 1.9E+02 0.004 27.3 7.1 88 245-370 122-214 (281)
270 PRK09620 hypothetical protein; 30.4 68 0.0015 29.3 4.0 38 5-43 3-52 (229)
271 PRK13604 luxD acyl transferase 30.2 94 0.002 29.8 5.0 35 6-41 37-71 (307)
272 PF09001 DUF1890: Domain of un 30.2 43 0.00094 27.7 2.3 33 19-52 13-45 (139)
273 PRK06522 2-dehydropantoate 2-r 30.1 73 0.0016 30.0 4.4 31 6-42 1-31 (304)
274 PF01075 Glyco_transf_9: Glyco 29.7 38 0.00082 30.9 2.2 96 5-118 105-212 (247)
275 PRK08322 acetolactate synthase 29.7 2.3E+02 0.005 29.5 8.3 27 341-367 64-96 (547)
276 PF02558 ApbA: Ketopantoate re 29.6 51 0.0011 27.4 2.9 27 24-51 12-38 (151)
277 cd03791 GT1_Glycogen_synthase_ 29.6 43 0.00093 34.0 2.8 21 22-43 22-42 (476)
278 COG1618 Predicted nucleotide k 29.5 1.7E+02 0.0037 25.3 5.8 44 1-45 1-44 (179)
279 PF02016 Peptidase_S66: LD-car 29.5 64 0.0014 30.5 3.8 73 270-369 47-121 (284)
280 PF02514 CobN-Mg_chel: CobN/Ma 29.4 4.7E+02 0.01 30.1 10.9 53 241-293 52-110 (1098)
281 PRK08535 translation initiatio 29.2 1.3E+02 0.0028 28.9 5.8 22 97-118 211-232 (310)
282 PF01008 IF-2B: Initiation fac 29.2 1.1E+02 0.0024 28.6 5.4 29 90-118 192-220 (282)
283 PRK07710 acetolactate synthase 29.1 2E+02 0.0044 30.2 7.8 26 342-367 80-111 (571)
284 cd03799 GT1_amsK_like This is 29.0 94 0.002 29.5 5.0 37 8-45 2-39 (355)
285 PRK01231 ppnK inorganic polyph 29.0 1E+02 0.0022 29.4 5.0 51 343-413 65-119 (295)
286 PF05368 NmrA: NmrA-like famil 28.8 50 0.0011 29.8 2.9 92 14-118 5-104 (233)
287 PRK08229 2-dehydropantoate 2-r 28.7 66 0.0014 31.1 3.8 32 6-43 3-34 (341)
288 COG2327 WcaK Polysaccharide py 27.9 3.4E+02 0.0073 27.0 8.4 71 333-413 280-351 (385)
289 PRK03708 ppnK inorganic polyph 27.7 97 0.0021 29.2 4.6 27 342-368 59-88 (277)
290 PLN02929 NADH kinase 27.3 1.2E+02 0.0025 29.1 5.0 64 342-413 66-138 (301)
291 PRK06029 3-octaprenyl-4-hydrox 27.3 97 0.0021 27.3 4.2 43 7-51 3-46 (185)
292 PRK07574 formate dehydrogenase 27.2 4.5E+02 0.0097 26.2 9.3 71 257-356 194-264 (385)
293 PRK06849 hypothetical protein; 27.2 1.3E+02 0.0028 29.8 5.7 36 5-45 4-39 (389)
294 COG4088 Predicted nucleotide k 27.1 73 0.0016 28.7 3.3 35 7-42 3-37 (261)
295 PRK14076 pnk inorganic polypho 27.1 95 0.0021 32.7 4.9 53 341-413 349-405 (569)
296 COG2210 Peroxiredoxin family p 27.1 1.1E+02 0.0023 25.5 4.1 41 9-50 7-47 (137)
297 PF03033 Glyco_transf_28: Glyc 27.1 1.5E+02 0.0032 24.0 5.2 35 258-294 1-35 (139)
298 PF12695 Abhydrolase_5: Alpha/ 27.0 1.1E+02 0.0025 24.5 4.6 36 9-45 2-37 (145)
299 PRK14619 NAD(P)H-dependent gly 26.9 77 0.0017 30.3 3.9 34 4-43 3-36 (308)
300 PF02826 2-Hacid_dh_C: D-isome 26.5 2.1E+02 0.0046 24.7 6.3 104 257-407 38-142 (178)
301 COG3195 Uncharacterized protei 26.3 2.7E+02 0.006 23.9 6.4 76 350-431 87-164 (176)
302 PRK05920 aromatic acid decarbo 26.1 1.2E+02 0.0027 27.1 4.7 44 6-51 4-47 (204)
303 PRK06932 glycerate dehydrogena 26.0 3.2E+02 0.0069 26.2 7.9 61 257-352 149-209 (314)
304 COG1759 5-formaminoimidazole-4 25.9 2.3E+02 0.005 27.3 6.5 47 243-295 4-50 (361)
305 PF13450 NAD_binding_8: NAD(P) 25.9 82 0.0018 22.4 3.0 18 23-41 9-26 (68)
306 PF00070 Pyr_redox: Pyridine n 25.8 1E+02 0.0022 22.5 3.6 25 20-45 9-33 (80)
307 cd02034 CooC The accessory pro 25.7 1.6E+02 0.0034 23.6 4.9 37 7-44 1-37 (116)
308 TIGR01501 MthylAspMutase methy 25.6 1.7E+02 0.0036 24.3 5.1 45 5-50 1-45 (134)
309 COG4081 Uncharacterized protei 25.6 1E+02 0.0022 25.3 3.5 29 17-46 16-44 (148)
310 COG0773 MurC UDP-N-acetylmuram 25.5 3.8E+02 0.0083 27.3 8.4 83 7-113 9-95 (459)
311 TIGR02852 spore_dpaB dipicolin 25.3 1E+02 0.0022 27.2 4.0 39 7-46 2-40 (187)
312 TIGR01281 DPOR_bchL light-inde 25.2 1.2E+02 0.0026 28.1 4.8 37 6-43 1-37 (268)
313 PRK13608 diacylglycerol glucos 25.0 1.2E+02 0.0025 30.1 4.9 39 1-40 1-43 (391)
314 PRK10964 ADP-heptose:LPS hepto 24.8 1E+02 0.0022 29.4 4.4 134 257-411 179-321 (322)
315 PF09334 tRNA-synt_1g: tRNA sy 24.7 74 0.0016 31.7 3.4 27 17-44 17-46 (391)
316 TIGR00421 ubiX_pad polyprenyl 24.6 1.1E+02 0.0023 26.9 4.0 41 8-50 2-42 (181)
317 COG4394 Uncharacterized protei 24.4 4.4E+02 0.0095 25.1 7.9 39 323-364 239-280 (370)
318 CHL00072 chlL photochlorophyll 24.4 1.3E+02 0.0028 28.5 4.9 39 6-45 1-39 (290)
319 COG4007 Predicted dehydrogenas 24.3 4.7E+02 0.01 24.5 8.0 20 24-44 35-54 (340)
320 PRK13059 putative lipid kinase 24.3 3E+02 0.0065 26.0 7.4 26 343-368 59-90 (295)
321 PRK13234 nifH nitrogenase redu 24.3 1.5E+02 0.0032 28.2 5.2 40 1-43 1-41 (295)
322 PF04464 Glyphos_transf: CDP-G 24.2 1.6E+02 0.0034 28.8 5.6 82 321-413 251-337 (369)
323 PRK06276 acetolactate synthase 24.2 3.6E+02 0.0078 28.4 8.6 26 342-367 65-96 (586)
324 TIGR00173 menD 2-succinyl-5-en 24.1 6.3E+02 0.014 25.3 10.1 25 342-366 65-95 (432)
325 COG3349 Uncharacterized conser 24.0 80 0.0017 32.3 3.4 31 6-42 1-31 (485)
326 COG1184 GCD2 Translation initi 23.9 2.9E+02 0.0062 26.4 6.9 29 90-118 203-231 (301)
327 TIGR00745 apbA_panE 2-dehydrop 23.9 78 0.0017 29.6 3.3 27 24-51 5-31 (293)
328 PLN02935 Bifunctional NADH kin 23.8 1.5E+02 0.0031 30.6 5.2 52 341-413 263-319 (508)
329 cd06533 Glyco_transf_WecG_TagA 23.7 3.7E+02 0.0079 23.1 7.2 84 187-294 49-133 (171)
330 PRK14573 bifunctional D-alanyl 23.7 4E+02 0.0086 29.5 9.1 30 7-41 6-35 (809)
331 PF01380 SIS: SIS domain SIS d 23.6 2.1E+02 0.0045 22.7 5.4 37 14-51 61-97 (131)
332 cd02032 Bchl_like This family 23.5 1.3E+02 0.0028 27.9 4.7 37 6-43 1-37 (267)
333 PRK06270 homoserine dehydrogen 23.5 6.9E+02 0.015 24.2 10.8 59 331-390 80-150 (341)
334 PF02776 TPP_enzyme_N: Thiamin 23.4 3.4E+02 0.0073 23.2 7.0 27 342-368 66-98 (172)
335 PRK11914 diacylglycerol kinase 23.3 5.9E+02 0.013 24.1 9.3 26 343-368 67-96 (306)
336 COG1703 ArgK Putative periplas 23.2 1.8E+02 0.0039 27.8 5.3 41 5-46 51-91 (323)
337 TIGR00730 conserved hypothetic 23.0 4.7E+02 0.01 22.7 7.7 36 332-367 89-133 (178)
338 PRK00923 sirohydrochlorin coba 23.0 4E+02 0.0086 21.3 7.8 35 257-291 3-39 (126)
339 PRK09922 UDP-D-galactose:(gluc 23.0 1.4E+02 0.0031 28.9 5.1 39 6-45 1-44 (359)
340 TIGR02113 coaC_strep phosphopa 22.7 1E+02 0.0023 26.8 3.6 42 7-50 2-43 (177)
341 cd03416 CbiX_SirB_N Sirohydroc 22.6 2.8E+02 0.0061 21.1 5.7 34 258-291 2-37 (101)
342 PRK14092 2-amino-4-hydroxy-6-h 22.6 1.7E+02 0.0038 25.1 4.8 29 256-284 7-35 (163)
343 PRK00141 murD UDP-N-acetylmura 22.5 3.8E+02 0.0083 27.3 8.2 31 6-42 16-46 (473)
344 PF03808 Glyco_tran_WecB: Glyc 22.4 4.4E+02 0.0096 22.6 7.5 85 186-294 50-135 (172)
345 PRK05340 UDP-2,3-diacylglucosa 22.4 2.3E+02 0.005 25.8 6.1 51 244-295 20-80 (241)
346 TIGR02699 archaeo_AfpA archaeo 22.4 1.3E+02 0.0029 26.1 4.1 35 16-50 9-44 (174)
347 PRK06222 ferredoxin-NADP(+) re 22.1 1.9E+02 0.0041 27.1 5.5 37 7-46 100-136 (281)
348 KOG1250 Threonine/serine dehyd 22.0 6.7E+02 0.015 25.1 9.0 104 275-413 206-317 (457)
349 PRK06036 translation initiatio 21.9 1.8E+02 0.0039 28.4 5.3 19 99-117 250-268 (339)
350 PRK02231 ppnK inorganic polyph 21.9 2.1E+02 0.0045 27.0 5.6 33 333-367 37-73 (272)
351 TIGR01990 bPGM beta-phosphoglu 21.9 2.1E+02 0.0046 24.4 5.5 23 22-45 92-114 (185)
352 PRK06242 flavodoxin; Provision 21.9 2.5E+02 0.0055 23.1 5.8 49 242-290 58-107 (150)
353 PF02780 Transketolase_C: Tran 21.8 1.7E+02 0.0037 23.4 4.6 35 5-42 9-43 (124)
354 PLN03139 formate dehydrogenase 21.6 7.5E+02 0.016 24.6 9.7 70 257-355 201-270 (386)
355 PRK14571 D-alanyl-alanine synt 21.6 4.5E+02 0.0098 24.7 8.1 35 258-292 3-39 (299)
356 COG0052 RpsB Ribosomal protein 21.4 4.2E+02 0.0091 24.5 7.1 29 90-118 160-189 (252)
357 PRK15409 bifunctional glyoxyla 21.4 5.6E+02 0.012 24.7 8.7 65 257-352 147-212 (323)
358 PRK14501 putative bifunctional 21.3 1.6E+02 0.0036 31.9 5.5 79 325-413 345-429 (726)
359 PRK04308 murD UDP-N-acetylmura 21.3 6.1E+02 0.013 25.5 9.4 37 1-43 1-37 (445)
360 COG1435 Tdk Thymidine kinase [ 21.2 2.2E+02 0.0049 25.3 5.2 99 8-114 7-116 (201)
361 TIGR01012 Sa_S2_E_A ribosomal 21.1 5.8E+02 0.013 22.7 7.9 95 18-118 44-141 (196)
362 cd00861 ProRS_anticodon_short 20.9 1.9E+02 0.0042 21.5 4.4 34 7-41 3-38 (94)
363 PRK11253 ldcA L,D-carboxypepti 20.8 2.5E+02 0.0055 26.9 6.1 27 268-295 48-76 (305)
364 PRK08673 3-deoxy-7-phosphohept 20.8 7.9E+02 0.017 23.9 12.7 43 245-295 168-210 (335)
365 PRK15424 propionate catabolism 20.7 4.2E+02 0.0091 27.7 8.0 30 340-370 64-93 (538)
366 PF01372 Melittin: Melittin; 20.7 15 0.00033 20.4 -1.3 17 349-365 1-17 (26)
367 PF09314 DUF1972: Domain of un 20.6 1.5E+02 0.0033 26.0 4.1 57 7-74 3-64 (185)
368 PLN00016 RNA-binding protein; 20.5 1.2E+02 0.0027 29.7 4.1 37 4-43 51-89 (378)
369 cd07394 MPP_Vps29 Homo sapiens 20.5 4.5E+02 0.0097 22.7 7.2 47 241-295 16-62 (178)
370 COG0240 GpsA Glycerol-3-phosph 20.4 3.2E+02 0.007 26.5 6.6 32 6-43 2-33 (329)
371 cd03115 SRP The signal recogni 20.4 2.4E+02 0.0053 23.9 5.5 39 8-47 3-41 (173)
372 TIGR00521 coaBC_dfp phosphopan 20.3 1.5E+02 0.0032 29.6 4.5 45 5-51 3-47 (390)
373 PRK05562 precorrin-2 dehydroge 20.2 6.6E+02 0.014 22.8 8.8 149 249-431 20-178 (223)
374 cd03789 GT1_LPS_heptosyltransf 20.1 1.5E+02 0.0033 27.6 4.4 96 257-366 122-223 (279)
375 PF04244 DPRP: Deoxyribodipyri 20.1 1.3E+02 0.0028 27.4 3.8 27 17-44 46-72 (224)
376 TIGR02700 flavo_MJ0208 archaeo 20.0 1.6E+02 0.0034 27.0 4.3 38 13-51 7-46 (234)
No 1
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=6.7e-65 Score=507.27 Aligned_cols=411 Identities=27% Similarity=0.428 Sum_probs=311.8
Q ss_pred CC-CCCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCC
Q 041323 1 MG-SENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHD 79 (433)
Q Consensus 1 m~-~~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~ 79 (433)
|+ ..++||+++|+|++||++||++||+.|++ ||++|||++++.+..++.+... ..+ .+|+|+.+++++. ++
T Consensus 1 ~~~~~~~HVvl~P~paqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~-~~~-----~~i~~~~lp~p~~-dg 72 (472)
T PLN02670 1 MKREEVLHVAMFPWLAMGHLIPFLRLSKLLAQ-KGHKISFISTPRNLHRLPKIPS-QLS-----SSITLVSFPLPSV-PG 72 (472)
T ss_pred CCCCCCcEEEEeCChhhhHHHHHHHHHHHHHh-CCCEEEEEeCCchHHhhhhccc-cCC-----CCeeEEECCCCcc-CC
Confidence 45 35679999999999999999999999999 9999999999998876664211 111 4699999997643 45
Q ss_pred CCCCCCCCc------------------------------cEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhh
Q 041323 80 LPPNTENRE------------------------------LVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMW 129 (433)
Q Consensus 80 l~~~~~~~~------------------------------~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~ 129 (433)
++++.++.. .|||+|.+++|+..+|+++|||.+.|+++++...+.+.++.
T Consensus 73 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~ 152 (472)
T PLN02670 73 LPSSAESSTDVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPS 152 (472)
T ss_pred CCCCcccccccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhH
Confidence 665433110 09999999999999999999999999999998877765432
Q ss_pred ccCCCCC--CCCCc-ccCCCC-CC--CccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhc
Q 041323 130 FNLPHRK--TNSDE-FTLPGF-PE--RCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQW 203 (433)
Q Consensus 130 ~~~p~~~--~~~~~-~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~ 203 (433)
....... ...+. ..+|+. |. .+.++..+++.++............+.+......+++++++|||++||++++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~ 232 (472)
T PLN02670 153 SLMEGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDL 232 (472)
T ss_pred hhhhcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHH
Confidence 1111000 00111 124443 21 123455677765543222222233333444456678899999999999999999
Q ss_pred ccccCCCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 041323 204 PRNYTKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEA 283 (433)
Q Consensus 204 ~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~ 283 (433)
++..++++++.|||+.+.....+... ..+....++|.+|||.+++++||||||||+...+.+++.+++.+|+.
T Consensus 233 l~~~~~~~v~~VGPl~~~~~~~~~~~-------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~ 305 (472)
T PLN02670 233 LSDLYRKPIIPIGFLPPVIEDDEEDD-------TIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEK 305 (472)
T ss_pred HHHhhCCCeEEEecCCcccccccccc-------ccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 98765678999999975321000000 00001125799999999888999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCce
Q 041323 284 SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPM 363 (433)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~ 363 (433)
++++|||+++.... .. ....+.+|++|.++++ .+++++.+|+||.+||+|++|++|||||||||++|++++||||
T Consensus 306 s~~~FlWv~r~~~~--~~-~~~~~~lp~~f~~~~~--~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~ 380 (472)
T PLN02670 306 SETPFFWVLRNEPG--TT-QNALEMLPDGFEERVK--GRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVL 380 (472)
T ss_pred CCCCEEEEEcCCcc--cc-cchhhcCChHHHHhcc--CCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCE
Confidence 99999999985310 00 0112358999999888 8899999999999999999999999999999999999999999
Q ss_pred EecccccchhhHHHHHHHHhcceEEEccCC-CCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcC
Q 041323 364 IGWPIAAEQTYNSKMLVEEMGMAVELTRGV-QSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRHQ 433 (433)
Q Consensus 364 i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~-~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~~ 433 (433)
|++|+++||+.||+++++ +|+|+.+.... .+.++.++|+++|+++|.++ +|++||+||+++++.++++
T Consensus 381 l~~P~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~-~g~~~r~~a~~l~~~~~~~ 449 (472)
T PLN02670 381 ILFPVLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDD-AGEEIRDKAKEMRNLFGDM 449 (472)
T ss_pred EeCcchhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHhCc
Confidence 999999999999999998 69999997521 23589999999999999876 7889999999999999875
No 2
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4.6e-64 Score=497.45 Aligned_cols=394 Identities=26% Similarity=0.411 Sum_probs=306.4
Q ss_pred CCCCCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCC
Q 041323 1 MGSENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDL 80 (433)
Q Consensus 1 m~~~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l 80 (433)
|++.|+||+++|+|++||++||++||+.|++ +|+.|||++++.+...+.+. .... ....+.+.++|.+ +++
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~-~g~~vT~~tt~~~~~~~~~~--~~~~---~~~~v~~~~~p~~---~gl 71 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAE-KGHTVTFLLPKKALKQLEHL--NLFP---HNIVFRSVTVPHV---DGL 71 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhccc--ccCC---CCceEEEEECCCc---CCC
Confidence 8889999999999999999999999999999 99999999999887665542 1001 0023666666643 456
Q ss_pred CCCCCCCc------------------------------cEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhc
Q 041323 81 PPNTENRE------------------------------LVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWF 130 (433)
Q Consensus 81 ~~~~~~~~------------------------------~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~ 130 (433)
+++.++.. +|||+|. ++|+.++|+++|||.+.|++++++..+.+..+
T Consensus 72 p~g~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~-- 148 (453)
T PLN02764 72 PVGTETVSEIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVP-- 148 (453)
T ss_pred CCcccccccCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhcc--
Confidence 55533210 1999995 88999999999999999999999887776521
Q ss_pred cCCCCCCCCCcccCCCCCCC-ccccccchhhhhhhc--CCCChHHHhHHHHhhhhcccceeEecchhccchhhhhccccc
Q 041323 131 NLPHRKTNSDEFTLPGFPER-CHFHITQLHKYWRMA--DGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPRNY 207 (433)
Q Consensus 131 ~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~ 207 (433)
... . ...+|++|.. +.++.++++.+.... ...+.....+.+.......++++++|||++||++++++++..
T Consensus 149 ---~~~-~--~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~ 222 (453)
T PLN02764 149 ---GGE-L--GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKH 222 (453)
T ss_pred ---ccc-C--CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhh
Confidence 100 0 0224666631 124555555432211 111223344555545667788999999999999999998764
Q ss_pred CCCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Q 041323 208 TKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKS 287 (433)
Q Consensus 208 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~ 287 (433)
.+++++.|||+++... . ....+++|.+|||.++++|||||||||+...+.+++.+++.+|+.++.+
T Consensus 223 ~~~~v~~VGPL~~~~~---~-----------~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~p 288 (453)
T PLN02764 223 CRKKVLLTGPVFPEPD---K-----------TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSP 288 (453)
T ss_pred cCCcEEEeccCccCcc---c-----------cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCC
Confidence 4578999999975431 0 1123568999999999999999999999988999999999999999999
Q ss_pred EEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceEecc
Q 041323 288 FLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWP 367 (433)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P 367 (433)
|+|+++...+. +...+.+|++|.++++ .+|+++.+|+||.+||+|+++++|||||||||++|++++|||||+||
T Consensus 289 flwv~r~~~~~----~~~~~~lp~~f~~r~~--grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P 362 (453)
T PLN02764 289 FLVAVKPPRGS----STIQEALPEGFEERVK--GRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVP 362 (453)
T ss_pred eEEEEeCCCCC----cchhhhCCcchHhhhc--cCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCC
Confidence 99999853210 1112458999999988 88999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHc
Q 041323 368 IAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA-GKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 368 ~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~~a~~l~~~~~~ 432 (433)
++.||+.||+++++.||+|+.+..+..+.++.++|+++|+++|+++ ++++.+|++++++++.+++
T Consensus 363 ~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~ 428 (453)
T PLN02764 363 QLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS 428 (453)
T ss_pred cccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 9999999999997657999998641113589999999999999875 4788999999999998864
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.7e-64 Score=503.72 Aligned_cols=404 Identities=31% Similarity=0.605 Sum_probs=312.4
Q ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCC
Q 041323 4 ENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPN 83 (433)
Q Consensus 4 ~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~ 83 (433)
.++||+++|+|++||++||++||+.|++ +|++|||++++.+..++.+... .. .+++++.++++. .+++|++
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~-~G~~VTfv~T~~n~~~~~~~~~--~~-----~~i~~~~lp~P~-~~~lPdG 78 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLAL-RGLTITVLVTPKNLPFLNPLLS--KH-----PSIETLVLPFPS-HPSIPSG 78 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHhhhcc--cC-----CCeeEEeCCCCC-cCCCCCC
Confidence 5789999999999999999999999999 9999999999999877765321 11 468888887653 3455555
Q ss_pred CCCCc--------------------------------cEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhcc
Q 041323 84 TENRE--------------------------------LVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFN 131 (433)
Q Consensus 84 ~~~~~--------------------------------~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~ 131 (433)
.++.. .|||+|.+++|+.++|+++|||.+.|++++++..+.+.+++..
T Consensus 79 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~ 158 (477)
T PLN02863 79 VENVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWRE 158 (477)
T ss_pred CcChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhc
Confidence 43211 1999999999999999999999999999999999888776544
Q ss_pred CCCCCC--C-CCcc---cCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhccc
Q 041323 132 LPHRKT--N-SDEF---TLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPR 205 (433)
Q Consensus 132 ~p~~~~--~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~ 205 (433)
.+.... . .... .+|+++. ++.++++.+++.....+.....+.+.......++++++|||++||++++++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 235 (477)
T PLN02863 159 MPTKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLK 235 (477)
T ss_pred ccccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHH
Confidence 432211 1 1111 3566665 77788887665332223334444444444556788999999999999999998
Q ss_pred ccCC-CCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 041323 206 NYTK-LPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEAS 284 (433)
Q Consensus 206 ~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~ 284 (433)
..++ ++++.|||+++........ ..++......+++|.+|||.+++++||||||||+...+.+++.+++.+|+.+
T Consensus 236 ~~~~~~~v~~IGPL~~~~~~~~~~----~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~ 311 (477)
T PLN02863 236 KELGHDRVWAVGPILPLSGEKSGL----MERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKS 311 (477)
T ss_pred hhcCCCCeEEeCCCcccccccccc----cccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhC
Confidence 7665 6899999997543110000 0001001113468999999999899999999999988999999999999999
Q ss_pred CCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceE
Q 041323 285 AKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMI 364 (433)
Q Consensus 285 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i 364 (433)
+++|||+++.... .+.....+|++|.+++. ++|+++.+|+||.+||+|++|++|||||||||++||+++|||+|
T Consensus 312 ~~~flw~~~~~~~----~~~~~~~lp~~~~~r~~--~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l 385 (477)
T PLN02863 312 GVHFIWCVKEPVN----EESDYSNIPSGFEDRVA--GRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPML 385 (477)
T ss_pred CCcEEEEECCCcc----cccchhhCCHHHHHHhc--cCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEE
Confidence 9999999985320 00112347889988877 88999999999999999999999999999999999999999999
Q ss_pred ecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 365 GWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 365 ~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
++|+++||+.||+++++.||+|+.+..+....++.+++.++|+++|.+ ++.||+||+++++++++
T Consensus 386 ~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~---~~~~r~~a~~l~e~a~~ 450 (477)
T PLN02863 386 AWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE---NQVERERAKELRRAALD 450 (477)
T ss_pred eCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHH
Confidence 999999999999998765899999964322356899999999999942 34899999999998764
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.4e-63 Score=493.83 Aligned_cols=392 Identities=26% Similarity=0.431 Sum_probs=302.9
Q ss_pred CCCCCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCC
Q 041323 1 MGSENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDL 80 (433)
Q Consensus 1 m~~~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l 80 (433)
|.++++||+++|+|++||++||++||+.|++ +|+.|||++++.+...+.... . .+|+|+.+++ ++
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~-~G~~vT~v~t~~~~~~~~~~~----~-----~~i~~~~ipd-----gl 65 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHS-KGFKTTHTLTTFIFNTIHLDP----S-----SPISIATISD-----GY 65 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHc-CCCEEEEEECCchhhhcccCC----C-----CCEEEEEcCC-----CC
Confidence 6677889999999999999999999999999 999999999998766553311 1 4689998873 44
Q ss_pred CCC-CCCCc-------------------------------cEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhh
Q 041323 81 PPN-TENRE-------------------------------LVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSM 128 (433)
Q Consensus 81 ~~~-~~~~~-------------------------------~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~ 128 (433)
|++ .+... +|||+|.+++|+.++|+++|||.+.|++++++....+++.
T Consensus 66 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~ 145 (449)
T PLN02173 66 DQGGFSSAGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS 145 (449)
T ss_pred CCcccccccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH
Confidence 431 11100 2899999999999999999999999999988877665532
Q ss_pred hccCCCCCCCCCcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhcccccC
Q 041323 129 WFNLPHRKTNSDEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPRNYT 208 (433)
Q Consensus 129 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~ 208 (433)
.... ......+|++|. ++.++++.++............+.+..+...+++++++|||++||++++++++..
T Consensus 146 ~~~~-----~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~- 216 (449)
T PLN02173 146 YINN-----GSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV- 216 (449)
T ss_pred Hhcc-----CCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc-
Confidence 2110 011245778776 6777888766432222233444445556677889999999999999999988653
Q ss_pred CCCeeEeCccCCcccccccccccccCCCCCCC--CCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Q 041323 209 KLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPG--VNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAK 286 (433)
Q Consensus 209 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~ 286 (433)
++++.|||+.+.............. +...+ ..+++|.+||+.+++++||||||||+...+.+++.+++.+| ++.
T Consensus 217 -~~v~~VGPl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~ 292 (449)
T PLN02173 217 -CPVLTIGPTVPSMYLDQQIKSDNDY-DLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNF 292 (449)
T ss_pred -CCeeEEcccCchhhccccccccccc-cccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCC
Confidence 4799999997531100000000000 00011 22356999999999999999999999988999999999999 778
Q ss_pred eEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceEec
Q 041323 287 SFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGW 366 (433)
Q Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~ 366 (433)
+|+|+++... .+.+|+++.+++. ++|+++.+|+||.+||+|++|++|||||||||++|++++|||||++
T Consensus 293 ~flWvvr~~~---------~~~lp~~~~~~~~--~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~ 361 (449)
T PLN02173 293 SYLWVVRASE---------ESKLPPGFLETVD--KDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAM 361 (449)
T ss_pred CEEEEEeccc---------hhcccchHHHhhc--CCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEec
Confidence 8999998431 1247888887775 6788888999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHhcceEEEccCC-CCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 367 PIAAEQTYNSKMLVEEMGMAVELTRGV-QSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 367 P~~~dQ~~na~~~~~~~G~g~~l~~~~-~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
|+++||+.||+++++.||+|+.+..++ +..++.++|+++|+++|.++ +++.+|+||+++++++++
T Consensus 362 P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~-~~~~~r~~a~~~~~~a~~ 427 (449)
T PLN02173 362 PQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGE-KSKEMKENAGKWRDLAVK 427 (449)
T ss_pred CchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHH
Confidence 999999999999998789999996522 13469999999999999876 688999999999998874
No 5
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=4.1e-63 Score=496.68 Aligned_cols=413 Identities=29% Similarity=0.547 Sum_probs=310.1
Q ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCC
Q 041323 4 ENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPN 83 (433)
Q Consensus 4 ~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~ 83 (433)
+++||+++|+|++||++||++||+.|++ +|+.|||++++.+..++.+....... ....|+|+.+|+|...+++|++
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~~~~~---~~~~i~~~~lp~p~~~dglp~~ 82 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAE-RGVIVSLVTTPQNASRFAKTIDRARE---SGLPIRLVQIPFPCKEVGLPIG 82 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHh-CCCeEEEEECCCcHHHHhhhhhhccc---cCCCeEEEEcCCCCccCCCCCC
Confidence 3579999999999999999999999999 99999999999987766553221100 0024999999977544566655
Q ss_pred CCCCc---------------------------------cEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhc
Q 041323 84 TENRE---------------------------------LVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWF 130 (433)
Q Consensus 84 ~~~~~---------------------------------~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~ 130 (433)
.++.. +|||+|.+++|+..+|+++|||.+.|++++++..+.+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~ 162 (491)
T PLN02534 83 CENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRL 162 (491)
T ss_pred ccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHH
Confidence 33211 199999999999999999999999999999987776544333
Q ss_pred cCCCCC--CCCCcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhcccccC
Q 041323 131 NLPHRK--TNSDEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPRNYT 208 (433)
Q Consensus 131 ~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~ 208 (433)
..+... .....+.+|+++....++..+++..+... .....+.....+....++++++|||++||+.++++++..+
T Consensus 163 ~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~---~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~ 239 (491)
T PLN02534 163 HNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL---PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAI 239 (491)
T ss_pred hcccccCCCCCceeecCCCCccccccHHHCChhhcCc---ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhc
Confidence 222111 11123557888755556677777643221 1112222222222345679999999999999999998767
Q ss_pred CCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeE
Q 041323 209 KLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSF 288 (433)
Q Consensus 209 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 288 (433)
+++++.|||+.......... ...+......+++|.+|||.+++++||||||||......+++.+++.+|+.++++|
T Consensus 240 ~~~v~~VGPL~~~~~~~~~~----~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~f 315 (491)
T PLN02534 240 KKKVWCVGPVSLCNKRNLDK----FERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPF 315 (491)
T ss_pred CCcEEEECcccccccccccc----cccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCE
Confidence 78899999997532110000 00000001124579999999998999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceEeccc
Q 041323 289 LWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPI 368 (433)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~ 368 (433)
||+++.... . .+.....+|++|.+++. ++|+++.+|+||.+||+|+++++|||||||||++||+++|||+|++|+
T Consensus 316 lW~~r~~~~--~-~~~~~~~~p~gf~~~~~--~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 316 IWVIKTGEK--H-SELEEWLVKENFEERIK--GRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred EEEEecCcc--c-cchhhhcCchhhHHhhc--cCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccc
Confidence 999984310 0 00111236788988776 789999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhcceEEEccC-------CC--C-cccHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHc
Q 041323 369 AAEQTYNSKMLVEEMGMAVELTRG-------VQ--S-TIVGHDVKNVIEMVMDE-AGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 369 ~~dQ~~na~~~~~~~G~g~~l~~~-------~~--~-~~~~~~l~~ai~~vl~~-~~~~~~~~~~a~~l~~~~~~ 432 (433)
++||+.||+++++.||+|+.+..+ ++ + .++.++|+++|+++|.+ .++|+.+|+||++|++++++
T Consensus 391 ~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~ 465 (491)
T PLN02534 391 FAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARK 465 (491)
T ss_pred cccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999889999988521 01 1 47999999999999973 34788999999999998875
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=5.1e-63 Score=494.18 Aligned_cols=399 Identities=30% Similarity=0.479 Sum_probs=308.4
Q ss_pred CCCCCcEEEEeCCCCcccHHHHHHHHHHHH-hcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCC
Q 041323 1 MGSENEHTVMLPLMAHGHLIPFLALAKQIH-RSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHD 79 (433)
Q Consensus 1 m~~~~~~il~~~~~~~GHv~P~l~LA~~L~-~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~ 79 (433)
|--.|+||+++|+|++||++||++||+.|+ + +|++|||++++.+..++.+... .. .++++..+|+++ .++
T Consensus 1 ~~~~~pHVvl~P~paqGHi~P~l~LAk~La~~-~g~~vT~v~t~~n~~~~~~~~~--~~-----~~i~~~~lp~p~-~~g 71 (481)
T PLN02992 1 MHITKPHAAMFSSPGMGHVIPVIELGKRLSAN-HGFHVTVFVLETDAASAQSKFL--NS-----TGVDIVGLPSPD-ISG 71 (481)
T ss_pred CCCCCcEEEEeCCcccchHHHHHHHHHHHHhC-CCcEEEEEeCCCchhhhhhccc--cC-----CCceEEECCCcc-ccC
Confidence 555688999999999999999999999998 7 8999999999988766543211 01 368899998753 234
Q ss_pred CC-CCCCCC------------------------ccEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhcc-CC
Q 041323 80 LP-PNTENR------------------------ELVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFN-LP 133 (433)
Q Consensus 80 l~-~~~~~~------------------------~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~-~p 133 (433)
++ ++.... ..|||+|.+++|+.++|+++|||.+.|+++++...+.+.+.+.. .+
T Consensus 72 lp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 151 (481)
T PLN02992 72 LVDPSAHVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKD 151 (481)
T ss_pred CCCCCccHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccc
Confidence 44 221100 01999999999999999999999999999999877665543211 11
Q ss_pred CCCC--C-CCcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhccccc---
Q 041323 134 HRKT--N-SDEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPRNY--- 207 (433)
Q Consensus 134 ~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~--- 207 (433)
.... . ...+.+|+++. ++..+++..+... .+.....+.+.......++++++|||++||++++++++..
T Consensus 152 ~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~ 226 (481)
T PLN02992 152 IKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLL 226 (481)
T ss_pred cccccccCCCCcccCCCCc---cCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccc
Confidence 1100 0 11245777765 6667777543321 2233444555556677889999999999999999987642
Q ss_pred ---CCCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 041323 208 ---TKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEAS 284 (433)
Q Consensus 208 ---~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~ 284 (433)
.+++++.|||+++... ....+++|.+|||.+++++||||||||+..++.+++++++.+|+.+
T Consensus 227 ~~~~~~~v~~VGPl~~~~~---------------~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s 291 (481)
T PLN02992 227 GRVARVPVYPIGPLCRPIQ---------------SSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMS 291 (481)
T ss_pred ccccCCceEEecCccCCcC---------------CCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHc
Confidence 1367999999985421 1123457999999998899999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCC-----CC--c----cccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhH
Q 041323 285 AKSFLWVIRPPVGFD-----LR--G----EFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSA 353 (433)
Q Consensus 285 ~~~~l~~~~~~~~~~-----~~--~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~ 353 (433)
+++|||+++.....+ +. . +...+.+|++|.++++ .+|+++.+|+||.+||+|+++++|||||||||+
T Consensus 292 ~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~--~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~ 369 (481)
T PLN02992 292 QQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTH--DRGFVVPSWAPQAEILAHQAVGGFLTHCGWSST 369 (481)
T ss_pred CCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhc--CCCEEEeecCCHHHHhCCcccCeeEecCchhHH
Confidence 999999997431000 00 0 0012358899999988 899999999999999999999999999999999
Q ss_pred HHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 354 LESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 354 ~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
+|++++|||||+||+++||+.||+++++.+|+|+.++.. ++.++.++|+++|+++|.++ +++.||++|+++++.+++
T Consensus 370 ~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~-~g~~~r~~a~~~~~~a~~ 446 (481)
T PLN02992 370 LESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP-KEVISRSKIEALVRKVMVEE-EGEEMRRKVKKLRDTAEM 446 (481)
T ss_pred HHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCC-CCcccHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996337999999741 13589999999999999886 788999999999998874
No 7
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=6e-63 Score=491.86 Aligned_cols=387 Identities=26% Similarity=0.385 Sum_probs=301.5
Q ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCC
Q 041323 4 ENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPN 83 (433)
Q Consensus 4 ~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~ 83 (433)
.|+||+++|+|++||++|+++||+.|++ +||+|||++++.+...+.+.. +.. .+++|..++++. .++++++
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~-~G~~VT~vtt~~~~~~i~~~~--a~~-----~~i~~~~l~~p~-~dgLp~g 73 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAE-KGHRVTFLLPKKAQKQLEHHN--LFP-----DSIVFHPLTIPP-VNGLPAG 73 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHh-CCCEEEEEeccchhhhhhccc--CCC-----CceEEEEeCCCC-ccCCCCC
Confidence 4689999999999999999999999999 999999999988877665521 111 357777776541 2456655
Q ss_pred CCCCc------------------------------cEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhccCC
Q 041323 84 TENRE------------------------------LVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFNLP 133 (433)
Q Consensus 84 ~~~~~------------------------------~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~p 133 (433)
.++.. +|||+| +++|+..+|+++|||.+.|++++++..+ +.+...
T Consensus 74 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--- 148 (442)
T PLN02208 74 AETTSDIPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--- 148 (442)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc---
Confidence 43211 199999 5789999999999999999999987654 332211
Q ss_pred CCCCCCCcccCCCCCC-CccccccchhhhhhhcCCCChHHH-hHHHHhhhhcccceeEecchhccchhhhhcccccCCCC
Q 041323 134 HRKTNSDEFTLPGFPE-RCHFHITQLHKYWRMADGSDDWSK-FMQPNITQSFQSYEMLCKTAEDIEPGALQWPRNYTKLP 211 (433)
Q Consensus 134 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~~~~ 211 (433)
.. ....+|++|. .+.++..+++.+ . ....... ...+..+...+++++++|||++||++++++++..++++
T Consensus 149 -~~---~~~~~pglp~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~ 220 (442)
T PLN02208 149 -GK---LGVPPPGYPSSKVLFRENDAHAL-A---TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKK 220 (442)
T ss_pred -cc---cCCCCCCCCCcccccCHHHcCcc-c---ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCC
Confidence 00 0123567764 223455566642 1 1112222 22233345667899999999999999999988777789
Q ss_pred eeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 041323 212 VWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWV 291 (433)
Q Consensus 212 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~ 291 (433)
++.|||+...... ...++++|.+|||.+++++||||||||+...+.+++.+++.+++.++.+++|+
T Consensus 221 v~~vGpl~~~~~~--------------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv 286 (442)
T PLN02208 221 VLLTGPMFPEPDT--------------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIA 286 (442)
T ss_pred EEEEeecccCcCC--------------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 9999999864310 12356789999999988999999999999889999999999998899999999
Q ss_pred EcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceEecccccc
Q 041323 292 IRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAE 371 (433)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~d 371 (433)
++...+ .+...+.+|++|.++++ .+|+++.+|+||.+||+|++|++|||||||||++|++++|||||+||+++|
T Consensus 287 ~r~~~~----~~~~~~~lp~~f~~r~~--~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~D 360 (442)
T PLN02208 287 VKPPRG----SSTVQEGLPEGFEERVK--GRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSD 360 (442)
T ss_pred EeCCCc----ccchhhhCCHHHHHHHh--cCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchh
Confidence 985310 01112358999999988 889999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHc
Q 041323 372 QTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA-GKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 372 Q~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~~a~~l~~~~~~ 432 (433)
|+.||+++++.||+|+.+..+.++.++.++|+++|+++|+++ ++++.+|++|+++++.+.+
T Consensus 361 Q~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~ 422 (442)
T PLN02208 361 QVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS 422 (442)
T ss_pred hHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc
Confidence 999999987767999999752113489999999999999875 4688999999999998753
No 8
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=9.5e-63 Score=490.95 Aligned_cols=387 Identities=24% Similarity=0.370 Sum_probs=300.4
Q ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCC
Q 041323 4 ENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPN 83 (433)
Q Consensus 4 ~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~ 83 (433)
.|+||+++|+|++||++||++||+.|++ +|++|||++++.+...+++... .. .+++|..++++. .+++|++
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~i~~~~~--~~-----~~i~~~~i~lP~-~dGLP~g 73 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAE-KGHRVTFFLPKKAHKQLQPLNL--FP-----DSIVFEPLTLPP-VDGLPFG 73 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHh-CCCEEEEEeCCchhhhhccccc--CC-----CceEEEEecCCC-cCCCCCc
Confidence 3579999999999999999999999999 9999999999988776654321 11 358887666542 3466655
Q ss_pred CCCCc------------------------------cEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhccCC
Q 041323 84 TENRE------------------------------LVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFNLP 133 (433)
Q Consensus 84 ~~~~~------------------------------~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~p 133 (433)
.+... +|||+|. ++|+..+|+++|||.+.|+++++...+.+.++...
T Consensus 74 ~e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~-- 150 (446)
T PLN00414 74 AETASDLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE-- 150 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh--
Confidence 33210 0999995 88999999999999999999999887776642110
Q ss_pred CCCCCCCcccCCCCCCC-ccccccc--hhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhcccccCCC
Q 041323 134 HRKTNSDEFTLPGFPER-CHFHITQ--LHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPRNYTKL 210 (433)
Q Consensus 134 ~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~~~ 210 (433)
....+|++|.. +.++..+ ++.++.. ....+.+..+...+++++++|||++||+.+++++++.+++
T Consensus 151 ------~~~~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 218 (446)
T PLN00414 151 ------LGFPPPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQR 218 (446)
T ss_pred ------cCCCCCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCC
Confidence 01234565531 1122222 1121110 1123444445667789999999999999999998876567
Q ss_pred CeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEE
Q 041323 211 PVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLW 290 (433)
Q Consensus 211 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~ 290 (433)
+++.|||+.+.... .. ....+++|.+|||.++++|||||||||....+.+++.+++.+|+.+|.+|+|
T Consensus 219 ~v~~VGPl~~~~~~-~~-----------~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flw 286 (446)
T PLN00414 219 KVLLTGPMLPEPQN-KS-----------GKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLI 286 (446)
T ss_pred CeEEEcccCCCccc-cc-----------CcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 89999999754310 00 0112457999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceEeccccc
Q 041323 291 VIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAA 370 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~ 370 (433)
+++...+. +...+.+|++|.++++ .+|+++.+|+||.+||+|+++++|||||||||++|++++|||+|++|++.
T Consensus 287 vvr~~~~~----~~~~~~lp~~f~~r~~--~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 360 (446)
T PLN00414 287 AVMPPKGS----STVQEALPEGFEERVK--GRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLA 360 (446)
T ss_pred EEecCCCc----ccchhhCChhHHHHhc--CCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCccc
Confidence 99864210 1112358999999998 88999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHc
Q 041323 371 EQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA-GKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 371 dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~~a~~l~~~~~~ 432 (433)
||+.||+++++.||+|+.+..+.++.++.++|+++|+++|.++ ++++.||++|+++++.+.+
T Consensus 361 dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~ 423 (446)
T PLN00414 361 DQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS 423 (446)
T ss_pred chHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc
Confidence 9999999997558999999652113589999999999999764 4688999999999998753
No 9
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.6e-62 Score=491.79 Aligned_cols=406 Identities=24% Similarity=0.398 Sum_probs=305.1
Q ss_pred CCC--CCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhc---cCC-CCCCCCCCceeEEEcCCC
Q 041323 1 MGS--ENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTI---SCA-NPNSPEKFNVNLVELPFC 74 (433)
Q Consensus 1 m~~--~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~---~~~-~~~~~~~~~i~f~~l~~~ 74 (433)
|.+ .++||+++|+|++||++||+.||+.|++ +|..|||++++.+...+.+.. .+. .. .....++|..++
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~-~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~--~~~~~i~~~~~p-- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLAS-KGLLVTFVTTESWGKKMRQANKIQDGVLKP--VGDGFIRFEFFE-- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHh-CCCeEEEEeccchhhhhhcccccccccccc--CCCCeEEEeeCC--
Confidence 554 4789999999999999999999999999 999999999998776655311 000 00 000236666554
Q ss_pred CCCCCCCCCCCC------------------------------Cc-cEEEEcCCcccHHHHHHHhCCceEEEecchHHHHH
Q 041323 75 SLDHDLPPNTEN------------------------------RE-LVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTL 123 (433)
Q Consensus 75 ~~~~~l~~~~~~------------------------------~~-~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~ 123 (433)
+++|++.+. .. .|||+|.+++|+.++|+++|||.++|++++++..+
T Consensus 76 ---dglp~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~ 152 (480)
T PLN02555 76 ---DGWAEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFS 152 (480)
T ss_pred ---CCCCCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHH
Confidence 233332110 00 29999999999999999999999999999999888
Q ss_pred HHhhhhccC-CCCCCC-C-CcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhh
Q 041323 124 AYTSMWFNL-PHRKTN-S-DEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGA 200 (433)
Q Consensus 124 ~~~~~~~~~-p~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~ 200 (433)
.+.+..... +..... . ..+.+|++|. ++.++++.++......+.....+.+..+...+++++++|||++||+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 229 (480)
T PLN02555 153 AYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEI 229 (480)
T ss_pred HHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHH
Confidence 776653321 211111 1 2245888876 777888876542112223344455555667778899999999999999
Q ss_pred hhcccccCCCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHH
Q 041323 201 LQWPRNYTKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIG 280 (433)
Q Consensus 201 ~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~a 280 (433)
++.++... + ++.|||+......... ..+...+..+++|.+|||.+++++||||||||+...+.+++.+++.+
T Consensus 230 ~~~l~~~~-~-v~~iGPl~~~~~~~~~------~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~ 301 (480)
T PLN02555 230 IDYMSKLC-P-IKPVGPLFKMAKTPNS------DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYG 301 (480)
T ss_pred HHHHhhCC-C-EEEeCcccCccccccc------cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHH
Confidence 99887643 4 9999999764311000 00000123457899999999988999999999998899999999999
Q ss_pred HHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcC
Q 041323 281 LEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQG 360 (433)
Q Consensus 281 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~G 360 (433)
|+.++++|||+++.... ..+.....+|+++.+++. .++.+.+|+||.+||+|++|++|||||||||++||+++|
T Consensus 302 l~~~~~~flW~~~~~~~---~~~~~~~~lp~~~~~~~~---~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~G 375 (480)
T PLN02555 302 VLNSGVSFLWVMRPPHK---DSGVEPHVLPEEFLEKAG---DKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSG 375 (480)
T ss_pred HHhcCCeEEEEEecCcc---cccchhhcCChhhhhhcC---CceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcC
Confidence 99999999999984310 000112347878876654 345666999999999999999999999999999999999
Q ss_pred CceEecccccchhhHHHHHHHHhcceEEEccCC--CCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 361 LPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGV--QSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 361 vP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~--~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
||||++|+++||+.||+++++.||+|+.+..+. .+.++.++|+++|+++|.++ +++.+|+||++|++++++
T Consensus 376 VP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~-~g~~~r~ra~~l~~~a~~ 448 (480)
T PLN02555 376 VPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGE-KAAELKQNALKWKEEAEA 448 (480)
T ss_pred CCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998789999995311 24689999999999999876 788999999999998874
No 10
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.6e-62 Score=490.01 Aligned_cols=385 Identities=29% Similarity=0.476 Sum_probs=296.8
Q ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCC
Q 041323 4 ENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPN 83 (433)
Q Consensus 4 ~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~ 83 (433)
.++||+++|+|++||++||++||+.|++ +|+.|||++++.+... .. ... .+++|..+|+ ++|++
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~-~G~~VT~v~T~~n~~~--~~---~~~-----~~i~~~~ip~-----glp~~ 69 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHL-KGFSITIAQTKFNYFS--PS---DDF-----TDFQFVTIPE-----SLPES 69 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHc-CCCEEEEEeCcccccc--cc---cCC-----CCeEEEeCCC-----CCCcc
Confidence 4679999999999999999999999999 9999999999877521 10 000 3688888873 34331
Q ss_pred -CCC-------------------------------CccEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhcc
Q 041323 84 -TEN-------------------------------RELVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFN 131 (433)
Q Consensus 84 -~~~-------------------------------~~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~ 131 (433)
.++ .-.|||+|.+++|+.++|+++|||.+.|++++++..+.+.++...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 149 (451)
T PLN02410 70 DFKNLGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKL 149 (451)
T ss_pred cccccCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHH
Confidence 111 012999999999999999999999999999999888766653221
Q ss_pred ------CCCCCC-CCCcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhcc
Q 041323 132 ------LPHRKT-NSDEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWP 204 (433)
Q Consensus 132 ------~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~ 204 (433)
.+.... ......+|+++. ++..+++..... ........+... .....++++++|||++||+++++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~--~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l 223 (451)
T PLN02410 150 YANNVLAPLKEPKGQQNELVPEFHP---LRCKDFPVSHWA--SLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRL 223 (451)
T ss_pred HhccCCCCccccccCccccCCCCCC---CChHHCcchhcC--CcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHH
Confidence 121111 112245777765 555666643221 111222223222 2346788999999999999999999
Q ss_pred cccCCCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 041323 205 RNYTKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEAS 284 (433)
Q Consensus 205 ~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~ 284 (433)
+...+++++.|||+......... .+....+|.+|||++++++||||||||....+.+++++++.+|+.+
T Consensus 224 ~~~~~~~v~~vGpl~~~~~~~~~-----------~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s 292 (451)
T PLN02410 224 QQQLQIPVYPIGPLHLVASAPTS-----------LLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSS 292 (451)
T ss_pred HhccCCCEEEecccccccCCCcc-----------ccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhc
Confidence 87667799999999754311000 1223457999999999899999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceE
Q 041323 285 AKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMI 364 (433)
Q Consensus 285 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i 364 (433)
+++|||+++... ..++.....+|++|.+++. .++ .+.+|+||.+||+|++|++|||||||||++||+++|||||
T Consensus 293 ~~~FlWv~r~~~---~~~~~~~~~lp~~f~er~~--~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l 366 (451)
T PLN02410 293 NQQFLWVIRPGS---VRGSEWIESLPKEFSKIIS--GRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMI 366 (451)
T ss_pred CCCeEEEEccCc---ccccchhhcCChhHHHhcc--CCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEE
Confidence 999999998431 0000111247999998886 455 5559999999999999999999999999999999999999
Q ss_pred ecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 365 GWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 365 ~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
++|+++||+.||+++++.||+|+.+. ..++.++|+++|+++|.++ +++.||++|+++++++++
T Consensus 367 ~~P~~~DQ~~na~~~~~~~~~G~~~~----~~~~~~~v~~av~~lm~~~-~~~~~r~~a~~l~~~~~~ 429 (451)
T PLN02410 367 CKPFSSDQKVNARYLECVWKIGIQVE----GDLDRGAVERAVKRLMVEE-EGEEMRKRAISLKEQLRA 429 (451)
T ss_pred eccccccCHHHHHHHHHHhCeeEEeC----CcccHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHH
Confidence 99999999999999998789999996 4689999999999999887 588999999999998874
No 11
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.5e-62 Score=494.50 Aligned_cols=415 Identities=31% Similarity=0.584 Sum_probs=307.4
Q ss_pred CCCCCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCC
Q 041323 1 MGSENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDL 80 (433)
Q Consensus 1 m~~~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l 80 (433)
|+++++||+++|+|++||++|++.||+.|++ |||+|||++++.+...+++.........+. ..+++..+++++..+++
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~-rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~-~~~~~~~~~~p~~~~gl 78 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSS-RGAKSTILTTPLNAKIFEKPIEAFKNLNPG-LEIDIQIFNFPCVELGL 78 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHh-CCCEEEEEECCCchhhhhhhhhhhcccCCC-CcceEEEeeCCCCcCCC
Confidence 7888999999999999999999999999999 999999999999887766543210000000 12344444444222344
Q ss_pred CCCCCCC-------------------------------------ccEEEEcCCcccHHHHHHHhCCceEEEecchHHHHH
Q 041323 81 PPNTENR-------------------------------------ELVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTL 123 (433)
Q Consensus 81 ~~~~~~~-------------------------------------~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~ 123 (433)
+++.+.. .+|||+|.+++|+..+|+++|||.+.|++++++..+
T Consensus 79 P~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~ 158 (482)
T PLN03007 79 PEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLC 158 (482)
T ss_pred CCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHH
Confidence 4332211 019999999999999999999999999999988776
Q ss_pred HHhhhhccCCCCCC-C-CCcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhh
Q 041323 124 AYTSMWFNLPHRKT-N-SDEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGAL 201 (433)
Q Consensus 124 ~~~~~~~~~p~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~ 201 (433)
.+.+.....+.... . ...+.+|++|..+.++..+++.. .........+....+...+++++++||+.+||+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~ 234 (482)
T PLN03007 159 ASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYA 234 (482)
T ss_pred HHHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHH
Confidence 66544332221111 1 11234777764333444444421 111223444555555677788999999999999988
Q ss_pred hcccccCCCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHH
Q 041323 202 QWPRNYTKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGL 281 (433)
Q Consensus 202 ~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al 281 (433)
+.+++..+.++++|||+........... .+++..+..+++|.+||+++++++||||||||+...+.+++.+++.+|
T Consensus 235 ~~~~~~~~~~~~~VGPl~~~~~~~~~~~----~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l 310 (482)
T PLN03007 235 DFYKSFVAKRAWHIGPLSLYNRGFEEKA----ERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGL 310 (482)
T ss_pred HHHHhccCCCEEEEcccccccccccccc----ccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHH
Confidence 8887766578999999865321100000 001111223578999999998899999999999888899999999999
Q ss_pred HhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCC
Q 041323 282 EASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGL 361 (433)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~Gv 361 (433)
+.++++|||+++... ..+...+.+|++|.+++. ++|+++.+|+||.+||+|+++++|||||||||++||+++||
T Consensus 311 ~~~~~~flw~~~~~~----~~~~~~~~lp~~~~~r~~--~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GV 384 (482)
T PLN03007 311 EGSGQNFIWVVRKNE----NQGEKEEWLPEGFEERTK--GKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGL 384 (482)
T ss_pred HHCCCCEEEEEecCC----cccchhhcCCHHHHHHhc--cCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCC
Confidence 999999999998641 000112348889988887 88999999999999999999999999999999999999999
Q ss_pred ceEecccccchhhHHHHHHHHhcceEEEccC-----CCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 362 PMIGWPIAAEQTYNSKMLVEEMGMAVELTRG-----VQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 362 P~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~-----~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
|||++|+++||+.||+++++.|++|+.+..+ +.+.++.++|+++|+++|.++ ++++||+||+++++.+++
T Consensus 385 P~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~~~~~r~~a~~~~~~a~~ 459 (482)
T PLN03007 385 PMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGE-EAEERRLRAKKLAEMAKA 459 (482)
T ss_pred CeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988656777766321 124689999999999999886 788999999999998875
No 12
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.7e-62 Score=485.59 Aligned_cols=401 Identities=25% Similarity=0.425 Sum_probs=300.4
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCC--cEEEE--EeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCC
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTG--FKITI--ANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDL 80 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rG--h~Vt~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l 80 (433)
+-||+++|+|++||++||++||+.|++ +| +.||+ ++++.+...+.+...... ...++++|+.+|++...+..
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~-~g~~~~vti~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~lp~~~~~~~~ 78 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILS-KNPSLSIHIILVPPPYQPESTATYISSVS---SSFPSITFHHLPAVTPYSSS 78 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHh-CCCceEEEEEEecCcchhhhhhhhhcccc---CCCCCeEEEEcCCCCCCCCc
Confidence 459999999999999999999999999 99 55555 544443332222111000 01146999999865211111
Q ss_pred CCCCCC---------------------------CccEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhccC-
Q 041323 81 PPNTEN---------------------------RELVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFNL- 132 (433)
Q Consensus 81 ~~~~~~---------------------------~~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~- 132 (433)
.....+ .-.|||+|.+++|+..+|+++|||.+.|++++++..+.+.+.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 79 STSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred cccccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 000000 0028999999999999999999999999999999888877643211
Q ss_pred C--CCCC-CCCcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhcccccCC
Q 041323 133 P--HRKT-NSDEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPRNYTK 209 (433)
Q Consensus 133 p--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~~ 209 (433)
+ .... ......+|+++. ++..+++..+... .+.....+.+.......++++++|||++||++++++++..+.
T Consensus 159 ~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~ 233 (451)
T PLN03004 159 TTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLER--DDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELC 233 (451)
T ss_pred cccccccccCCeecCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCC
Confidence 1 1110 111245788876 7778888765432 122344555555666778899999999999999999876543
Q ss_pred -CCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeE
Q 041323 210 -LPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSF 288 (433)
Q Consensus 210 -~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 288 (433)
++++.|||++..... ... ....+.+|.+|||.+++++||||||||+...+.+++++++.+|+.++++|
T Consensus 234 ~~~v~~vGPl~~~~~~-~~~----------~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~F 302 (451)
T PLN03004 234 FRNIYPIGPLIVNGRI-EDR----------NDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRF 302 (451)
T ss_pred CCCEEEEeeeccCccc-ccc----------ccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCE
Confidence 689999999853210 000 01124579999999998999999999999899999999999999999999
Q ss_pred EEEEcCCCCCCCCcccccc-CCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceEecc
Q 041323 289 LWVIRPPVGFDLRGEFRSE-RLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWP 367 (433)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P 367 (433)
||+++.....+ ....... .+|++|.++++ .+|+++.+|+||.+||+|+++++|||||||||++|++++|||+|++|
T Consensus 303 lW~~r~~~~~~-~~~~~~~~~lp~gf~er~~--~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P 379 (451)
T PLN03004 303 LWVVRNPPELE-KTELDLKSLLPEGFLSRTE--DKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWP 379 (451)
T ss_pred EEEEcCCcccc-ccccchhhhCChHHHHhcc--CCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecc
Confidence 99998531000 0000112 37899999988 88999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 368 IAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 368 ~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
+++||+.||+++++.||+|+.+..+..+.++.++|+++|+++|+++ .||++|++++++++.
T Consensus 380 ~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~----~~r~~a~~~~~~a~~ 440 (451)
T PLN03004 380 LYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC----PVRERTMAMKNAAEL 440 (451)
T ss_pred ccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHH
Confidence 9999999999998658999999752113679999999999999887 899999999998864
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.1e-61 Score=481.86 Aligned_cols=400 Identities=30% Similarity=0.476 Sum_probs=303.1
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcC-CcEEEEEeCCCchhhhh--hhccCCCCCCCCCCceeEEEcCCCCCCCCC-
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRST-GFKITIANTPLNIQYLQ--NTISCANPNSPEKFNVNLVELPFCSLDHDL- 80 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~r-Gh~Vt~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l- 80 (433)
++||+++|+|++||++||++||+.|++ + |..|||++++.+...+. ........ ..+|+|..+|+++. +++
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~-~~g~~vT~v~t~~~~~~~~~~~~~~~~~~----~~~i~~~~lp~~~~-~~l~ 76 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSS-VLNIHVTILAVTSGSSSPTETEAIHAAAA----RTTCQITEIPSVDV-DNLV 76 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHh-CCCCeEEEEECCCchhhhccccccccccC----CCceEEEECCCCcc-ccCC
Confidence 569999999999999999999999998 7 99999999887665442 11111000 02699999997632 233
Q ss_pred CCCCCCC------------------------ccEEEEcCCcccHHHHHHHhCCc-eEEEecchHHHHHHHhhhhccC-CC
Q 041323 81 PPNTENR------------------------ELVFGSSTFFGWAVDVAKSAGTT-NVTFITGGAYGTLAYTSMWFNL-PH 134 (433)
Q Consensus 81 ~~~~~~~------------------------~~~vv~d~~~~~a~~vA~~lgiP-~v~~~~~~~~~~~~~~~~~~~~-p~ 134 (433)
+.+.... ..|||+|.+++|+.++|+++||| .+.|+++.++....+++.+... ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~ 156 (470)
T PLN03015 77 EPDATIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVV 156 (470)
T ss_pred CCCccHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccc
Confidence 2111000 01899999999999999999999 5888888887776665432211 11
Q ss_pred CC---CCCCcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhcccccC---
Q 041323 135 RK---TNSDEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPRNYT--- 208 (433)
Q Consensus 135 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~--- 208 (433)
.. ...+.+.+|+++. ++..+++..+.... ......+.+..+...+++++++|||++||+.+++.+++.+
T Consensus 157 ~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~ 231 (470)
T PLN03015 157 EGEYVDIKEPLKIPGCKP---VGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELN 231 (470)
T ss_pred ccccCCCCCeeeCCCCCC---CChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccc
Confidence 11 1012255788876 77778886553221 2222233344455778999999999999999999887642
Q ss_pred ---CCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCC
Q 041323 209 ---KLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASA 285 (433)
Q Consensus 209 ---~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~ 285 (433)
+++++.|||++.... ....+++|.+|||.+++++||||||||+...+.+++++++.+|+.++
T Consensus 232 ~~~~~~v~~VGPl~~~~~---------------~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~ 296 (470)
T PLN03015 232 RVMKVPVYPIGPIVRTNV---------------HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSG 296 (470)
T ss_pred cccCCceEEecCCCCCcc---------------cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCC
Confidence 257999999984321 01223579999999998999999999999999999999999999999
Q ss_pred CeEEEEEcCCCC---CCC-CccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCC
Q 041323 286 KSFLWVIRPPVG---FDL-RGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGL 361 (433)
Q Consensus 286 ~~~l~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~Gv 361 (433)
++|||+++.... +.. +.+...+.+|++|.++++ .+++++.+|+||.+||+|++|++|||||||||++|++++||
T Consensus 297 ~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~--~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~Gv 374 (470)
T PLN03015 297 QRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTR--GVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGV 374 (470)
T ss_pred CcEEEEEecCccccccccccccchhhcCChHHHHhhc--cCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCC
Confidence 999999974310 000 000112358999999988 88999999999999999999999999999999999999999
Q ss_pred ceEecccccchhhHHHHHHHHhcceEEEcc-CCCCcccHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHc
Q 041323 362 PMIGWPIAAEQTYNSKMLVEEMGMAVELTR-GVQSTIVGHDVKNVIEMVMDE-AGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 362 P~i~~P~~~dQ~~na~~~~~~~G~g~~l~~-~~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~~a~~l~~~~~~ 432 (433)
|||+||+++||+.||+++++.||+|+.+.. +..+.++.++++++|+++|.+ .++|+.+|+||+++++++++
T Consensus 375 P~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~ 447 (470)
T PLN03015 375 PIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSER 447 (470)
T ss_pred CEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999666899999952 112468999999999999963 24788999999999998875
No 14
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.1e-61 Score=488.58 Aligned_cols=401 Identities=26% Similarity=0.450 Sum_probs=304.8
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCC----cEEEEEeCCCchh----hhhhhccCCCCCCCCCCceeEEEcCCCCC
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTG----FKITIANTPLNIQ----YLQNTISCANPNSPEKFNVNLVELPFCSL 76 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rG----h~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~f~~l~~~~~ 76 (433)
|+||+++|+|++||++||++||+.|++ +| +.|||++++.+.. ++......... ...+++|+.+|++.
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~-~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~lp~~~- 77 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLA-SSGGGALSLTVLVMPPPTPESASEVAAHVRREAA---SGLDIRFHHLPAVE- 77 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHh-CCCCCcEEEEEEEcCCCccchhHHHHHHHhhccc---CCCCEEEEECCCCC-
Confidence 679999999999999999999999999 97 8999999876532 33332111000 00269999998652
Q ss_pred CCCCCCCCCCCc-------------------------cEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhcc
Q 041323 77 DHDLPPNTENRE-------------------------LVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFN 131 (433)
Q Consensus 77 ~~~l~~~~~~~~-------------------------~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~ 131 (433)
++++.++.. .|||+|.+++|+.++|+++|||.+.|+++++...+.+.+....
T Consensus 78 ---~p~~~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~ 154 (480)
T PLN00164 78 ---PPTDAAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPAL 154 (480)
T ss_pred ---CCCccccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhh
Confidence 222221110 2999999999999999999999999999999888877654321
Q ss_pred C-CCC---CCCCCcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhccccc
Q 041323 132 L-PHR---KTNSDEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPRNY 207 (433)
Q Consensus 132 ~-p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~ 207 (433)
. ... ....+.+.+||++. ++..+++..+... .+.....+....+...+++++++|||++||+.++++++..
T Consensus 155 ~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 229 (480)
T PLN00164 155 DEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDK--KSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADG 229 (480)
T ss_pred cccccCcccccCcceecCCCCC---CChHHCCchhcCC--CcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhc
Confidence 1 100 00012245788776 7777787654422 1222333444455667789999999999999999988763
Q ss_pred C------CCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHH
Q 041323 208 T------KLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGL 281 (433)
Q Consensus 208 ~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al 281 (433)
+ .++++.|||+....... . ....+++|.+|||++++++||||||||+...+.+++.+++.+|
T Consensus 230 ~~~~~~~~~~v~~vGPl~~~~~~~-~-----------~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL 297 (480)
T PLN00164 230 RCTPGRPAPTVYPIGPVISLAFTP-P-----------AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGL 297 (480)
T ss_pred cccccCCCCceEEeCCCccccccC-C-----------CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 2 15899999998532100 0 1234568999999999999999999999888999999999999
Q ss_pred HhCCCeEEEEEcCCCCCCC--Ccc-ccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHh
Q 041323 282 EASAKSFLWVIRPPVGFDL--RGE-FRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLS 358 (433)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~ 358 (433)
+.++++|||+++.....+. ..+ ...+.+|++|.++++ .+++++.+|+||.+||+|++|++|||||||||++|+++
T Consensus 298 ~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~ 375 (480)
T PLN00164 298 ERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTK--GRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLW 375 (480)
T ss_pred HHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhc--CCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHH
Confidence 9999999999985421000 000 011247889998888 88999999999999999999999999999999999999
Q ss_pred cCCceEecccccchhhHHHHHHHHhcceEEEccCC--CCcccHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHc
Q 041323 359 QGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGV--QSTIVGHDVKNVIEMVMDEAG-KGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 359 ~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~--~~~~~~~~l~~ai~~vl~~~~-~~~~~~~~a~~l~~~~~~ 432 (433)
+|||||+||+++||+.||+++++.||+|+.+..++ ++.++.++|+++|+++|.+++ +++.+|++|+++++++++
T Consensus 376 ~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~ 452 (480)
T PLN00164 376 HGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRK 452 (480)
T ss_pred cCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998866589999996421 135799999999999998764 588999999999998875
No 15
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=4.4e-61 Score=480.83 Aligned_cols=391 Identities=23% Similarity=0.380 Sum_probs=296.3
Q ss_pred CC-CCCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCC
Q 041323 1 MG-SENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHD 79 (433)
Q Consensus 1 m~-~~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~ 79 (433)
|+ +.++||+++|+|++||++||++||+.|++ +|++|||++++.+..++.+.... . .+++|+.+|+... ++
T Consensus 1 ~~~~~~~HVVlvPfPaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~~~~~~~~--~-----~~i~~v~lp~g~~-~~ 71 (448)
T PLN02562 1 MKVTQRPKIILVPYPAQGHVTPMLKLASAFLS-RGFEPVVITPEFIHRRISATLDP--K-----LGITFMSISDGQD-DD 71 (448)
T ss_pred CCCCCCcEEEEEcCccccCHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhhhccCC--C-----CCEEEEECCCCCC-CC
Confidence 44 34579999999999999999999999999 99999999999987766653110 1 3689998884311 11
Q ss_pred CCCCC-------------------CC-----CccEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhccC---
Q 041323 80 LPPNT-------------------EN-----RELVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFNL--- 132 (433)
Q Consensus 80 l~~~~-------------------~~-----~~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~--- 132 (433)
.+... .. .-.|||+|.+++|+.++|+++|||.+.|+++++...+.+.+.....
T Consensus 72 ~~~~~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~ 151 (448)
T PLN02562 72 PPRDFFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTG 151 (448)
T ss_pred ccccHHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcc
Confidence 11000 00 0029999999999999999999999999999888776655432111
Q ss_pred --CCCCCCC--Cc-ccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhcccc-
Q 041323 133 --PHRKTNS--DE-FTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPRN- 206 (433)
Q Consensus 133 --p~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~- 206 (433)
+...... +. ..+|+++. ++.++++.++............+.+..+...+++++++|||++||+.+++....
T Consensus 152 ~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 228 (448)
T PLN02562 152 LISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQAS 228 (448)
T ss_pred ccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhh
Confidence 1000000 11 24677765 667777765543222233345555666667778899999999999988876542
Q ss_pred ---cCCCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCC-CCCHHHHHHHHHHHH
Q 041323 207 ---YTKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQN-TISSSQTMELAIGLE 282 (433)
Q Consensus 207 ---~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~-~~~~~~~~~~~~al~ 282 (433)
...++++.|||+........ .+...+..+.+|.+|||++++++||||||||+. ..+.+++++++.+|+
T Consensus 229 ~~~~~~~~v~~iGpl~~~~~~~~--------~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~ 300 (448)
T PLN02562 229 YNNGQNPQILQIGPLHNQEATTI--------TKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALE 300 (448)
T ss_pred hccccCCCEEEecCccccccccc--------CCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHH
Confidence 23478999999986431100 000011334678999999988899999999986 578899999999999
Q ss_pred hCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCc
Q 041323 283 ASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLP 362 (433)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP 362 (433)
++|++|||+++... .+.+|++|.+++. .|+.+.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 301 ~~g~~fiW~~~~~~---------~~~l~~~~~~~~~---~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP 368 (448)
T PLN02562 301 ASGRPFIWVLNPVW---------REGLPPGYVERVS---KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKR 368 (448)
T ss_pred HCCCCEEEEEcCCc---------hhhCCHHHHHHhc---cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCC
Confidence 99999999997531 1237788877664 45677799999999999999999999999999999999999
Q ss_pred eEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 363 MIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 363 ~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
+|++|+++||+.||+++++.+|+|+.+. .++.++++++|+++|+++ .||+||+++++++++
T Consensus 369 ~l~~P~~~DQ~~na~~~~~~~g~g~~~~-----~~~~~~l~~~v~~~l~~~----~~r~~a~~l~~~~~~ 429 (448)
T PLN02562 369 LLCYPVAGDQFVNCAYIVDVWKIGVRIS-----GFGQKEVEEGLRKVMEDS----GMGERLMKLRERAMG 429 (448)
T ss_pred EEeCCcccchHHHHHHHHHHhCceeEeC-----CCCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHh
Confidence 9999999999999999987579998884 368999999999999887 899999999998764
No 16
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=6.1e-61 Score=477.34 Aligned_cols=393 Identities=25% Similarity=0.421 Sum_probs=293.3
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCc-hhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCC
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN-IQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPN 83 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~ 83 (433)
++||+++|+|++||++||++||+.|++++|+.|||++++.+ .+.+.+.. . ...+++|+.++ ++++.+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~---~----~~~~i~~~~i~-----dglp~g 70 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH---N----NVENLSFLTFS-----DGFDDG 70 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC---C----CCCCEEEEEcC-----CCCCCc
Confidence 56999999999999999999999999515999999999864 22221110 0 01368898886 344433
Q ss_pred CCC-Cc-------------------------------cEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhcc
Q 041323 84 TEN-RE-------------------------------LVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFN 131 (433)
Q Consensus 84 ~~~-~~-------------------------------~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~ 131 (433)
.+. .. +|||+|.+++|+.++|+++|||.+.|++++++..+.+++.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 150 (455)
T PLN02152 71 VISNTDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG 150 (455)
T ss_pred cccccccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc
Confidence 211 00 2899999999999999999999999999999988877654321
Q ss_pred CCCCCCCCCcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcc--cceeEecchhccchhhhhcccccCC
Q 041323 132 LPHRKTNSDEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQ--SYEMLCKTAEDIEPGALQWPRNYTK 209 (433)
Q Consensus 132 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~t~~~le~~~~~~~~~~~~ 209 (433)
. .....+|+++. ++.++++.++............+.+..+.... ++++++|||++||+.++++++.
T Consensus 151 ~------~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~--- 218 (455)
T PLN02152 151 N------NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN--- 218 (455)
T ss_pred C------CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---
Confidence 1 11245788776 67778887664322222334445455554433 4699999999999999998864
Q ss_pred CCeeEeCccCCcccccccccccccCCCC--CCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Q 041323 210 LPVWTIGPLLPQSYLKKSFFNLQQHSGK--NPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKS 287 (433)
Q Consensus 210 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~ 287 (433)
.+++.|||+.+....... ..+. ..+..+.+|.+|||++++++||||||||+...+.+++++++.+|+.++.+
T Consensus 219 ~~v~~VGPL~~~~~~~~~------~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~ 292 (455)
T PLN02152 219 IEMVAVGPLLPAEIFTGS------ESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRP 292 (455)
T ss_pred CCEEEEcccCcccccccc------ccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCC
Confidence 379999999854210000 0000 00123458999999998889999999999999999999999999999999
Q ss_pred EEEEEcCCCCC--CCCcccc-ccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceE
Q 041323 288 FLWVIRPPVGF--DLRGEFR-SERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMI 364 (433)
Q Consensus 288 ~l~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i 364 (433)
|||+++..... +...+.. ...+|++|.++++ + +..+.+|+||.+||+|++|++|||||||||++|++++|||+|
T Consensus 293 flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~--~-~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l 369 (455)
T PLN02152 293 FLWVITDKLNREAKIEGEEETEIEKIAGFRHELE--E-VGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVV 369 (455)
T ss_pred eEEEEecCcccccccccccccccccchhHHHhcc--C-CeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEE
Confidence 99999853100 0000000 0124677777665 3 445669999999999999999999999999999999999999
Q ss_pred ecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 365 GWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 365 ~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
++|+++||+.||+++++.||+|+.+..+.++.++.++|+++|+++|+++ ++.||+||+++++++++
T Consensus 370 ~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~~r~~a~~~~~~~~~ 435 (455)
T PLN02152 370 AFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK--SVELRESAEKWKRLAIE 435 (455)
T ss_pred eccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999877888888642224579999999999999754 55799999999998864
No 17
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.2e-60 Score=478.15 Aligned_cols=395 Identities=25% Similarity=0.416 Sum_probs=293.2
Q ss_pred CCCcEEEEeCCCCcccHHHHHHHHHH--HHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCC
Q 041323 3 SENEHTVMLPLMAHGHLIPFLALAKQ--IHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDL 80 (433)
Q Consensus 3 ~~~~~il~~~~~~~GHv~P~l~LA~~--L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l 80 (433)
..+.||+++|+|++||++|||.||++ |++ ||++|||++++.+..++..... . . ..+++..++ +++
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~-~G~~VT~v~t~~~~~~~~~~~~-~-~-----~~~~~~~~~-----~gl 72 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSS-KNLHFTLATTEQARDLLSTVEK-P-R-----RPVDLVFFS-----DGL 72 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhc-CCcEEEEEeccchhhhhccccC-C-C-----CceEEEECC-----CCC
Confidence 35789999999999999999999999 558 9999999999988776543211 0 1 356766655 345
Q ss_pred CCCCCC-C-----------------------ccEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhcc-CCCC
Q 041323 81 PPNTEN-R-----------------------ELVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFN-LPHR 135 (433)
Q Consensus 81 ~~~~~~-~-----------------------~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~-~p~~ 135 (433)
+++.+. . -+|||+|.+++|+..+|+++|||.+.|+++++...+.+.+.+.. .+..
T Consensus 73 p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~ 152 (456)
T PLN02210 73 PKDDPRAPETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFP 152 (456)
T ss_pred CCCcccCHHHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCC
Confidence 543211 0 01999999999999999999999999999998877766643221 1111
Q ss_pred CCC--CCcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhcccccCCCCee
Q 041323 136 KTN--SDEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPRNYTKLPVW 213 (433)
Q Consensus 136 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~~~~~~ 213 (433)
... .....+|+++. ++.++++..+..... ......+.+..+....++++++|||.+||+++++.+++ . ++++
T Consensus 153 ~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~-~~v~ 226 (456)
T PLN02210 153 DLEDLNQTVELPALPL---LEVRDLPSFMLPSGG-AHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L-KPVI 226 (456)
T ss_pred cccccCCeeeCCCCCC---CChhhCChhhhcCCc-hHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c-CCEE
Confidence 110 11245777765 666677765443211 11222333444455667899999999999999998876 3 6899
Q ss_pred EeCccCCccc--ccccccccccCCCCC--CCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEE
Q 041323 214 TIGPLLPQSY--LKKSFFNLQQHSGKN--PGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFL 289 (433)
Q Consensus 214 ~vGp~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l 289 (433)
+|||+++... ...... ..+.. .+..+++|.+|||.+++++||||||||....+.+++++++.+|+.++++||
T Consensus 227 ~VGPl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~fl 302 (456)
T PLN02210 227 PIGPLVSPFLLGDDEEET----LDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFL 302 (456)
T ss_pred EEcccCchhhcCcccccc----cccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEE
Confidence 9999985310 000000 00000 123456899999999889999999999998889999999999999999999
Q ss_pred EEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceEecccc
Q 041323 290 WVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIA 369 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~ 369 (433)
|+++... ....++.+.++.. .+++ .+.+|+||.+||+|+++++|||||||||++|++++|||||+||++
T Consensus 303 w~~~~~~---------~~~~~~~~~~~~~-~~~g-~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~ 371 (456)
T PLN02210 303 WVIRPKE---------KAQNVQVLQEMVK-EGQG-VVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSW 371 (456)
T ss_pred EEEeCCc---------cccchhhHHhhcc-CCCe-EEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccc
Confidence 9998531 0112234444432 0345 456999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHhcceEEEccCC-CCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 370 AEQTYNSKMLVEEMGMAVELTRGV-QSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 370 ~dQ~~na~~~~~~~G~g~~l~~~~-~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
+||+.||+++++.||+|+.+..+. ++.++.++|+++|+++|.++ +|++||+||++|++.+++
T Consensus 372 ~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~-~g~~~r~~a~~l~~~a~~ 434 (456)
T PLN02210 372 TDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGP-AAADIRRRAAELKHVARL 434 (456)
T ss_pred cccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHH
Confidence 999999999997579999996421 24689999999999999876 688999999999998875
No 18
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=6.9e-60 Score=470.75 Aligned_cols=397 Identities=25% Similarity=0.429 Sum_probs=295.6
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCC--cEEEEEeCCCch-hhhhhhccCCCCCCCCCCceeEEEcCCCCC-CC-C
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTG--FKITIANTPLNI-QYLQNTISCANPNSPEKFNVNLVELPFCSL-DH-D 79 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rG--h~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~-~~-~ 79 (433)
|.||+++|+|++||++||++||+.|++ +| ..|||++++.+. ..+.....+.. ....+++|..+|+... .+ +
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~-~gg~~~vT~~~t~~~~~~~~~~~~~~~~---~~~~~i~~~~lp~~~~~~~~~ 78 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIE-QDDRIRITILLMKLQGQSHLDTYVKSIA---SSQPFVRFIDVPELEEKPTLG 78 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHh-CCCCeEEEEEEcCCCcchhhHHhhhhcc---CCCCCeEEEEeCCCCCCCccc
Confidence 579999999999999999999999999 98 999999998765 22222111000 0013699999984211 00 0
Q ss_pred CCCC-----------C------------CC-----C-ccEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhc
Q 041323 80 LPPN-----------T------------EN-----R-ELVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWF 130 (433)
Q Consensus 80 l~~~-----------~------------~~-----~-~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~ 130 (433)
-..+ . +. . -.|||+|.+++|+..+|+++|||.+.|+++++...+.+.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 79 GTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred cccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 0000 0 00 0 1399999999999999999999999999999987777654422
Q ss_pred c-CCCCC---CCC-CcccCCCC-CCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhcc
Q 041323 131 N-LPHRK---TNS-DEFTLPGF-PERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWP 204 (433)
Q Consensus 131 ~-~p~~~---~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~ 204 (433)
. .+... ... ..+.+|++ +. ++..+++.++... +. ...+.+......+++++++|||++||+++++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~---~~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~ 231 (468)
T PLN02207 159 RHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVE---DG-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHF 231 (468)
T ss_pred ccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcCC---cc-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHH
Confidence 1 11100 001 12457887 44 7777887655321 11 333444555677889999999999999988888
Q ss_pred cc-cCCCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 041323 205 RN-YTKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEA 283 (433)
Q Consensus 205 ~~-~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~ 283 (433)
+. ...++++.|||+......... ......+++|.+|||.+++++||||||||....+.+++++++.+|+.
T Consensus 232 ~~~~~~p~v~~VGPl~~~~~~~~~---------~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~ 302 (468)
T PLN02207 232 LDEQNYPSVYAVGPIFDLKAQPHP---------EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLEL 302 (468)
T ss_pred HhccCCCcEEEecCCcccccCCCC---------ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHH
Confidence 54 233789999999864311000 00011236899999999988999999999998999999999999999
Q ss_pred CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCce
Q 041323 284 SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPM 363 (433)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~ 363 (433)
++++|||+++... ....+.+|++|.+++. .++ .+.+|+||.+||+|+++++|||||||||++||+++||||
T Consensus 303 ~~~~flW~~r~~~------~~~~~~lp~~f~er~~--~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~ 373 (468)
T PLN02207 303 CQYRFLWSLRTEE------VTNDDLLPEGFLDRVS--GRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPI 373 (468)
T ss_pred CCCcEEEEEeCCC------ccccccCCHHHHhhcC--CCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCE
Confidence 9999999998531 1112358889988775 444 556999999999999999999999999999999999999
Q ss_pred EecccccchhhHHHHHHHHhcceEEEccC----CCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 364 IGWPIAAEQTYNSKMLVEEMGMAVELTRG----VQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 364 i~~P~~~dQ~~na~~~~~~~G~g~~l~~~----~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
|+||+++||+.||+++++.||+|+.+..+ ..+.++.++|+++|+++|++ ++++||+||+++++++++
T Consensus 374 l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~--~~~~~r~~a~~l~~~a~~ 444 (468)
T PLN02207 374 VTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK--DNNVVRKRVMDISQMIQR 444 (468)
T ss_pred EecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHH
Confidence 99999999999999988767999988421 11356999999999999973 356999999999999874
No 19
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.7e-59 Score=468.82 Aligned_cols=391 Identities=26% Similarity=0.415 Sum_probs=294.8
Q ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHhcC--CcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCC
Q 041323 4 ENEHTVMLPLMAHGHLIPFLALAKQIHRST--GFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLP 81 (433)
Q Consensus 4 ~~~~il~~~~~~~GHv~P~l~LA~~L~~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~ 81 (433)
.++||+++|+|++||++||++||++|++ | ||+|||++++.+...+++... . .+++|+.+++... ++..
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~-~~~G~~VT~~~t~~~~~~i~~~~~---~-----~gi~fv~lp~~~p-~~~~ 78 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLAS-RKPDILITFVVTEEWLGLIGSDPK---P-----DNIRFATIPNVIP-SELV 78 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHc-CCCCcEEEEEeCCchHhHhhccCC---C-----CCEEEEECCCCCC-Cccc
Confidence 4689999999999999999999999999 9 999999999998887776321 1 4799999884100 1110
Q ss_pred CCC---------------------C---CCccEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhccC-----
Q 041323 82 PNT---------------------E---NRELVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFNL----- 132 (433)
Q Consensus 82 ~~~---------------------~---~~~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~----- 132 (433)
... + ...+|||+|.++.|+..+|+++|||.+.|+++++...+.+.+.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 158 (459)
T PLN02448 79 RAADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHF 158 (459)
T ss_pred cccCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCC
Confidence 000 0 01139999999999999999999999999999997777665543211
Q ss_pred CCCCCC-CCc--ccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhcccccCC
Q 041323 133 PHRKTN-SDE--FTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPRNYTK 209 (433)
Q Consensus 133 p~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~~ 209 (433)
+..... .+. ..+|+++. ++..+++.++... .......+.+......+++++++|||++||+.+++++++.++
T Consensus 159 ~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~ 233 (459)
T PLN02448 159 PVELSESGEERVDYIPGLSS---TRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFP 233 (459)
T ss_pred CCccccccCCccccCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcC
Confidence 111100 111 13566654 5666677654321 122234444555556677899999999999999999887666
Q ss_pred CCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEE
Q 041323 210 LPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFL 289 (433)
Q Consensus 210 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l 289 (433)
++++.|||+.+.....+. +........+.+|.+||+.+++++||||||||+...+.+++++++.+|+.++++||
T Consensus 234 ~~~~~iGP~~~~~~~~~~------~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~l 307 (459)
T PLN02448 234 FPVYPIGPSIPYMELKDN------SSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFL 307 (459)
T ss_pred CceEEecCcccccccCCC------ccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEE
Confidence 789999999864211000 00000011235899999999889999999999988888999999999999999999
Q ss_pred EEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceEecccc
Q 041323 290 WVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIA 369 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~ 369 (433)
|+++... .++.+.. +.++.+.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 308 w~~~~~~--------------~~~~~~~---~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~ 370 (459)
T PLN02448 308 WVARGEA--------------SRLKEIC---GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLF 370 (459)
T ss_pred EEEcCch--------------hhHhHhc---cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEecccc
Confidence 9876321 1222222 2466777999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHhcceEEEccC--CCCcccHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHc
Q 041323 370 AEQTYNSKMLVEEMGMAVELTRG--VQSTIVGHDVKNVIEMVMDEA-GKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 370 ~dQ~~na~~~~~~~G~g~~l~~~--~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~~a~~l~~~~~~ 432 (433)
+||+.||+++++.||+|+.+..+ ..+.+++++|+++|+++|.++ ++++.||+||+++++++++
T Consensus 371 ~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~ 436 (459)
T PLN02448 371 WDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRG 436 (459)
T ss_pred ccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999878999998642 123579999999999999874 5788999999999998875
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.4e-59 Score=471.37 Aligned_cols=400 Identities=26% Similarity=0.435 Sum_probs=293.2
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCC--cEEEEEeCCCchhhhh--h-hccCCCCCCCCCCceeEEEcCCCCCCCC
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTG--FKITIANTPLNIQYLQ--N-TISCANPNSPEKFNVNLVELPFCSLDHD 79 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rG--h~Vt~~~~~~~~~~~~--~-~~~~~~~~~~~~~~i~f~~l~~~~~~~~ 79 (433)
|+||+++|+|++||++||++||+.|++ +| ..|||++++.+...+. . ...+... ....+|+|+.+|++...+.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~-~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~lp~~~~~~~ 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVD-SDDRLSITVIIIPSRSGDDASSSAYIASLSA--SSEDRLRYEVISAGDQPTT 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHh-CCCCEEEEEEeCCCccchhhhhhhhhhhccc--CCCCCeEEEEcCCCCCCcc
Confidence 689999999999999999999999999 98 8999999988754321 1 0000000 0014699999986531100
Q ss_pred -CCC--------------CCC----C------C-ccEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhccCC
Q 041323 80 -LPP--------------NTE----N------R-ELVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFNLP 133 (433)
Q Consensus 80 -l~~--------------~~~----~------~-~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~p 133 (433)
... ..+ . . -.|||+|.+++|+.++|+++|||.+.|++++++..+.+.+.+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~ 158 (481)
T PLN02554 79 EDPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYD 158 (481)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhcc
Confidence 000 000 0 0 1289999999999999999999999999999998888776533211
Q ss_pred C---C--C-CCC-CcccCCCCC-CCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhccc
Q 041323 134 H---R--K-TNS-DEFTLPGFP-ERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPR 205 (433)
Q Consensus 134 ~---~--~-~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~ 205 (433)
. . . ... ..+.+|+++ . ++..+++..+.. ......+.+......+++++++||+.+||+.++..+.
T Consensus 159 ~~~~~~~~~~~~~~~v~iPgl~~p---l~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~ 231 (481)
T PLN02554 159 EKKYDVSELEDSEVELDVPSLTRP---YPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFS 231 (481)
T ss_pred ccccCccccCCCCceeECCCCCCC---CCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHH
Confidence 0 0 0 111 124577763 3 555666654321 1223444555566778899999999999999998887
Q ss_pred cc--CCCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHh
Q 041323 206 NY--TKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEA 283 (433)
Q Consensus 206 ~~--~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~ 283 (433)
+. ..++++.|||++......+. .....+++|.+||+++++++||||||||+...+.+++++++.+|+.
T Consensus 232 ~~~~~~~~v~~vGpl~~~~~~~~~----------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~ 301 (481)
T PLN02554 232 GSSGDLPPVYPVGPVLHLENSGDD----------SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALER 301 (481)
T ss_pred hcccCCCCEEEeCCCccccccccc----------cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHH
Confidence 53 23789999999532211000 0023456899999999888999999999988899999999999999
Q ss_pred CCCeEEEEEcCCCCC---CCCcc--ccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHh
Q 041323 284 SAKSFLWVIRPPVGF---DLRGE--FRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLS 358 (433)
Q Consensus 284 ~~~~~l~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~ 358 (433)
++++|||+++..... +..++ ...+.+|++|.+++. .++ .+.+|+||.+||+|+++++|||||||||++|+++
T Consensus 302 ~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~--~~g-~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~ 378 (481)
T PLN02554 302 SGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTK--DIG-KVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLW 378 (481)
T ss_pred cCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhc--cCc-eEEeeCCHHHHhCCcccCcccccCccchHHHHHH
Confidence 999999999853100 00000 011236888887775 444 5569999999999999999999999999999999
Q ss_pred cCCceEecccccchhhHHHH-HHHHhcceEEEccC--------CCCcccHHHHHHHHHHHhc-CCchhHHHHHHHHHHHH
Q 041323 359 QGLPMIGWPIAAEQTYNSKM-LVEEMGMAVELTRG--------VQSTIVGHDVKNVIEMVMD-EAGKGQEMKAKAEKIGR 428 (433)
Q Consensus 359 ~GvP~i~~P~~~dQ~~na~~-~~~~~G~g~~l~~~--------~~~~~~~~~l~~ai~~vl~-~~~~~~~~~~~a~~l~~ 428 (433)
+|||||+||+++||+.||++ +++ ||+|+.+..+ ....+++++|+++|+++|+ |+ .||+||+++++
T Consensus 379 ~GVP~l~~P~~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~----~~r~~a~~l~~ 453 (481)
T PLN02554 379 FGVPMAAWPLYAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS----DVRKRVKEMSE 453 (481)
T ss_pred cCCCEEecCccccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH----HHHHHHHHHHH
Confidence 99999999999999999965 566 7999999631 1246899999999999996 44 89999999999
Q ss_pred HHHc
Q 041323 429 QIRH 432 (433)
Q Consensus 429 ~~~~ 432 (433)
++++
T Consensus 454 ~~~~ 457 (481)
T PLN02554 454 KCHV 457 (481)
T ss_pred HHHH
Confidence 9874
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.7e-57 Score=459.10 Aligned_cols=401 Identities=26% Similarity=0.402 Sum_probs=287.9
Q ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHhcCCc---EEEEEeCCCchh-hhhhhccCCCCCCCCCCceeEEEcCCCCCCC-
Q 041323 4 ENEHTVMLPLMAHGHLIPFLALAKQIHRSTGF---KITIANTPLNIQ-YLQNTISCANPNSPEKFNVNLVELPFCSLDH- 78 (433)
Q Consensus 4 ~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh---~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~- 78 (433)
+++||+++|+|++||++||++||+.|++ +|. .||+.++..+.. .......+.. .+.++|+|+.+|++....
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~-~G~~~t~vt~~~t~~~~~~~~~~~~~~~~---~~~~~i~~~~lp~~~~p~~ 77 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLIN-LDRRIHTITILYWSLPFAPQADAFLKSLI---ASEPRIRLVTLPEVQDPPP 77 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHh-CCCCeEEEEEEECCCCcchhhhHHHhhcc---cCCCCeEEEECCCCCCCcc
Confidence 3679999999999999999999999999 994 567766544321 1111110000 011469999998652100
Q ss_pred -C-CCCC-----------------------CC---C----CccEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHh
Q 041323 79 -D-LPPN-----------------------TE---N----RELVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYT 126 (433)
Q Consensus 79 -~-l~~~-----------------------~~---~----~~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~ 126 (433)
. .... .. . .-.|||+|.+++|+.++|+++|||.+.|++++++..+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~ 157 (475)
T PLN02167 78 MELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMK 157 (475)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 0 0000 00 0 0138999999999999999999999999999998877766
Q ss_pred hhhc-cCCCC-C--C-C-CCcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhh
Q 041323 127 SMWF-NLPHR-K--T-N-SDEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGA 200 (433)
Q Consensus 127 ~~~~-~~p~~-~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~ 200 (433)
+... ..... . . . .+.+.+||++.. ++..+++..+... . ....+.+..+...+++++++|||++||+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~---~-~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 231 (475)
T PLN02167 158 YLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMK---E-SYEAWVEIAERFPEAKGILVNSFTELEPNA 231 (475)
T ss_pred HHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchhhhCc---c-hHHHHHHHHHhhcccCEeeeccHHHHHHHH
Confidence 4321 11100 0 0 0 122457777421 5556666543321 1 123344455566778999999999999999
Q ss_pred hhcccccC--CCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHH
Q 041323 201 LQWPRNYT--KLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELA 278 (433)
Q Consensus 201 ~~~~~~~~--~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~ 278 (433)
+++++... .++++.|||+......... + .....+.+|.+||+.+++++||||||||+...+.+++.+++
T Consensus 232 ~~~l~~~~~~~p~v~~vGpl~~~~~~~~~--------~-~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela 302 (475)
T PLN02167 232 FDYFSRLPENYPPVYPVGPILSLKDRTSP--------N-LDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIA 302 (475)
T ss_pred HHHHHhhcccCCeeEEeccccccccccCC--------C-CCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHH
Confidence 99886531 1689999999864311000 0 01122367999999999899999999999888999999999
Q ss_pred HHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHh
Q 041323 279 IGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLS 358 (433)
Q Consensus 279 ~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~ 358 (433)
.+|+.++++|||+++..... .......+|++|.++++ .++++ .+|+||.+||+|++|++|||||||||++||++
T Consensus 303 ~~l~~~~~~flw~~~~~~~~---~~~~~~~lp~~~~er~~--~rg~v-~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~ 376 (475)
T PLN02167 303 QALELVGCRFLWSIRTNPAE---YASPYEPLPEGFMDRVM--GRGLV-CGWAPQVEILAHKAIGGFVSHCGWNSVLESLW 376 (475)
T ss_pred HHHHhCCCcEEEEEecCccc---ccchhhhCChHHHHHhc--cCeee-eccCCHHHHhcCcccCeEEeeCCcccHHHHHH
Confidence 99999999999999853100 00112347889988876 56644 49999999999999999999999999999999
Q ss_pred cCCceEecccccchhhHHHHHHHHhcceEEEccC----CCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 359 QGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRG----VQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 359 ~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~----~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
+|||||+||+++||+.||+++++.||+|+.+..+ ....++.++|+++|+++|.++ +.||+||+++++++++
T Consensus 377 ~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~---~~~r~~a~~~~~~~~~ 451 (475)
T PLN02167 377 FGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE---DVPRKKVKEIAEAARK 451 (475)
T ss_pred cCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHH
Confidence 9999999999999999998754447999999641 013579999999999999754 2799999999998874
No 22
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.9e-47 Score=392.55 Aligned_cols=364 Identities=20% Similarity=0.300 Sum_probs=215.7
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCCCC-
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPNTE- 85 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~~~- 85 (433)
+|+++|. +.+|+.+|..||++|++ |||+||++++... ..+..... ..+++..++.+...+.......
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~-rGH~VTvl~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 69 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAE-RGHNVTVLTPSPS-SSLNPSKP---------SNIRFETYPDPYPEEEFEEIFPE 69 (500)
T ss_dssp -----------SHHHHHHHHHHHHH-H-TTSEEEHHHHH-HT---------------S-CCEEEE-----TT------TT
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHh-cCCceEEEEeecc-cccccccc---------cceeeEEEcCCcchHHHhhhhHH
Confidence 6888885 78999999999999999 9999999986432 12221111 3444444432211111111000
Q ss_pred ----------------------------------CC--------------ccEEEEcCCcccHHHHHHHhCCceEEEecc
Q 041323 86 ----------------------------------NR--------------ELVFGSSTFFGWAVDVAKSAGTTNVTFITG 117 (433)
Q Consensus 86 ----------------------------------~~--------------~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~ 117 (433)
.. -|++++|.+.+|+..+|+.+++|.+.+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 70 FISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 00 018889988889999999999999875433
Q ss_pred hHHHHH-----HHhhhhccCCCCCC-CCCcccCCCCCCCcccc--ccchhhhhhhcCCCChHH---HhHHHHhhhhcccc
Q 041323 118 GAYGTL-----AYTSMWFNLPHRKT-NSDEFTLPGFPERCHFH--ITQLHKYWRMADGSDDWS---KFMQPNITQSFQSY 186 (433)
Q Consensus 118 ~~~~~~-----~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 186 (433)
...... ....++.+.|.... .++.+.+.++..+.... .......+... .+.... ..-....+.+....
T Consensus 150 ~~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 228 (500)
T PF00201_consen 150 TPMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSP-QDKLYKKYFGFPFSFRELLSNAS 228 (500)
T ss_dssp CSCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS--TTS-EEESS-GGGCHHHHHHHH
T ss_pred cccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhh-HHHHHhhhcccccccHHHHHHHH
Confidence 221100 00112222232211 11223322211111110 00000000000 000000 00001122333445
Q ss_pred eeEecchhccchhhhhcccccCCCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCC
Q 041323 187 EMLCKTAEDIEPGALQWPRNYTKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQ 266 (433)
Q Consensus 187 ~~l~~t~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~ 266 (433)
.+++|+...++.+ ++ +.|++++||++.... ..+++.++..|++...+++||||||||+
T Consensus 229 l~l~ns~~~ld~p-----rp-~~p~v~~vGgl~~~~----------------~~~l~~~~~~~~~~~~~~~vv~vsfGs~ 286 (500)
T PF00201_consen 229 LVLINSHPSLDFP-----RP-LLPNVVEVGGLHIKP----------------AKPLPEELWNFLDSSGKKGVVYVSFGSI 286 (500)
T ss_dssp HCCSSTEEE---------HH-HHCTSTTGCGC-S--------------------TCHHHHHHHTSTTTTTEEEEEE-TSS
T ss_pred HHhhhccccCcCC-----cc-hhhcccccCcccccc----------------ccccccccchhhhccCCCCEEEEecCcc
Confidence 6677777655533 44 347899999987554 2467889999998855678999999999
Q ss_pred CCCC-HHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEE
Q 041323 267 NTIS-SSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFL 345 (433)
Q Consensus 267 ~~~~-~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~i 345 (433)
.... .+..++++++|++.+++|||++.+. .++.+ ++|+.+.+|+||.+||+|+++++||
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-------------~~~~l-------~~n~~~~~W~PQ~~lL~hp~v~~fi 346 (500)
T PF00201_consen 287 VSSMPEEKLKEIAEAFENLPQRFIWKYEGE-------------PPENL-------PKNVLIVKWLPQNDLLAHPRVKLFI 346 (500)
T ss_dssp STT-HHHHHHHHHHHHHCSTTEEEEEETCS-------------HGCHH-------HTTEEEESS--HHHHHTSTTEEEEE
T ss_pred cchhHHHHHHHHHHHHhhCCCccccccccc-------------ccccc-------cceEEEeccccchhhhhcccceeee
Confidence 7533 4458889999999999999999753 11222 5688999999999999999999999
Q ss_pred ecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 041323 346 SYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEK 425 (433)
Q Consensus 346 thgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~ 425 (433)
||||+||++||+++|||+|++|+++||+.||.++++. |+|+.++. .++++++|.++|+++|+|+ +|++||++
T Consensus 347 tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~---~~~~~~~l~~ai~~vl~~~----~y~~~a~~ 418 (500)
T PF00201_consen 347 THGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDK---NDLTEEELRAAIREVLENP----SYKENAKR 418 (500)
T ss_dssp ES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGG---GC-SHHHHHHHHHHHHHSH----HHHHHHHH
T ss_pred eccccchhhhhhhccCCccCCCCcccCCccceEEEEE-eeEEEEEe---cCCcHHHHHHHHHHHHhhh----HHHHHHHH
Confidence 9999999999999999999999999999999999996 99999998 8899999999999999998 99999999
Q ss_pred HHHHHHcC
Q 041323 426 IGRQIRHQ 433 (433)
Q Consensus 426 l~~~~~~~ 433 (433)
+++.+++|
T Consensus 419 ls~~~~~~ 426 (500)
T PF00201_consen 419 LSSLFRDR 426 (500)
T ss_dssp HHHTTT--
T ss_pred HHHHHhcC
Confidence 99999875
No 23
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.8e-44 Score=366.09 Aligned_cols=368 Identities=17% Similarity=0.236 Sum_probs=251.3
Q ss_pred EEEEe-CCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCC---------
Q 041323 7 HTVML-PLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSL--------- 76 (433)
Q Consensus 7 ~il~~-~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~--------- 76 (433)
+|+++ |.++.+|..-+-+++++|++ |||+||++++.... ....... .+++...++....
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~-rGH~VTvi~p~~~~-~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~ 90 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAE-RGHNVTVIKPTLRV-YYASHLC---------GNITEIDASLSVEYFKKLVKSS 90 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHH-cCCeEEEEeccccc-ccccCCC---------CCEEEEEcCCChHHHHHHHhhh
Confidence 57755 88999999999999999999 99999999764311 0000000 1222222210000
Q ss_pred --------------------------------CCCCCCCC---CCCccEEEEcCCcccHHHHHHHh-CCceEEEecchHH
Q 041323 77 --------------------------------DHDLPPNT---ENRELVFGSSTFFGWAVDVAKSA-GTTNVTFITGGAY 120 (433)
Q Consensus 77 --------------------------------~~~l~~~~---~~~~~~vv~d~~~~~a~~vA~~l-giP~v~~~~~~~~ 120 (433)
...+..-. +..-|++|+|.+..|+..+|+.+ ++|.|.++++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~ 170 (507)
T PHA03392 91 AVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGL 170 (507)
T ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCc
Confidence 00000001 11124999998888999999999 9999888776543
Q ss_pred HHHH-----HhhhhccCCCCCC-CCCcccCCCCCCCccccccchhhhhhhcCCCC-hHHHhHH----HHhhhhcccceeE
Q 041323 121 GTLA-----YTSMWFNLPHRKT-NSDEFTLPGFPERCHFHITQLHKYWRMADGSD-DWSKFMQ----PNITQSFQSYEML 189 (433)
Q Consensus 121 ~~~~-----~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~l 189 (433)
.... .+.++.++|.... .++.+.+-++..++.........+.......+ ...+.+. ...+.......++
T Consensus 171 ~~~~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~l 250 (507)
T PHA03392 171 AENFETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLF 250 (507)
T ss_pred hhHHHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEE
Confidence 2211 1122234443222 12222222211111000000000000000000 1111111 1223345567889
Q ss_pred ecchhccchhhhhcccccCCCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCC-
Q 041323 190 CKTAEDIEPGALQWPRNYTKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNT- 268 (433)
Q Consensus 190 ~~t~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~- 268 (433)
+|+...++.+ + .+++++++|||+..+... ..++++++.+|++.++ +++|||||||+..
T Consensus 251 vns~~~~d~~-----r-p~~p~v~~vGgi~~~~~~--------------~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~ 309 (507)
T PHA03392 251 VNVHPVFDNN-----R-PVPPSVQYLGGLHLHKKP--------------PQPLDDYLEEFLNNST-NGVVYVSFGSSIDT 309 (507)
T ss_pred EecCccccCC-----C-CCCCCeeeecccccCCCC--------------CCCCCHHHHHHHhcCC-CcEEEEECCCCCcC
Confidence 9999777755 4 568999999999764310 2467889999999875 4799999999863
Q ss_pred --CCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEe
Q 041323 269 --ISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLS 346 (433)
Q Consensus 269 --~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~it 346 (433)
.+.+.++.+++++++.+++|||+++... .+.+. ++|+.+.+|+||.+||+|+++++|||
T Consensus 310 ~~~~~~~~~~~l~a~~~l~~~viw~~~~~~------------~~~~~-------p~Nv~i~~w~Pq~~lL~hp~v~~fIt 370 (507)
T PHA03392 310 NDMDNEFLQMLLRTFKKLPYNVLWKYDGEV------------EAINL-------PANVLTQKWFPQRAVLKHKNVKAFVT 370 (507)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEECCCc------------CcccC-------CCceEEecCCCHHHHhcCCCCCEEEe
Confidence 4678899999999999999999987531 11011 67999999999999999999999999
Q ss_pred cCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 041323 347 YCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKI 426 (433)
Q Consensus 347 hgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l 426 (433)
|||+||++||+++|||+|++|+++||+.||+++++. |+|+.++. .++++++|+++|+++++|+ +||+||+++
T Consensus 371 HGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~---~~~t~~~l~~ai~~vl~~~----~y~~~a~~l 442 (507)
T PHA03392 371 QGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDT---VTVSAAQLVLAIVDVIENP----KYRKNLKEL 442 (507)
T ss_pred cCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEecc---CCcCHHHHHHHHHHHhCCH----HHHHHHHHH
Confidence 999999999999999999999999999999999995 99999998 7899999999999999998 999999999
Q ss_pred HHHHHcC
Q 041323 427 GRQIRHQ 433 (433)
Q Consensus 427 ~~~~~~~ 433 (433)
++.+++|
T Consensus 443 s~~~~~~ 449 (507)
T PHA03392 443 RHLIRHQ 449 (507)
T ss_pred HHHHHhC
Confidence 9999875
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=5.7e-41 Score=344.42 Aligned_cols=385 Identities=25% Similarity=0.396 Sum_probs=246.0
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCCC
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPNT 84 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~~ 84 (433)
+.|++++++|++||++|++.||+.|++ +||+||++++.......... ..... ...+.....++....++++...
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~-~gh~vt~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 78 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAE-RGHNVTVVTPSFNALKLSKS-SKSKS----IKKINPPPFEFLTIPDGLPEGW 78 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHH-cCCceEEEEeechhcccCCc-cccee----eeeeecChHHhhhhhhhhccch
Confidence 578999999999999999999999999 99999999987765543321 10000 0000111111110001122211
Q ss_pred CCC---------------------------------ccEEEEcCCcccHHHHHHHhC-CceEEEecchHHHHHHHhh-hh
Q 041323 85 ENR---------------------------------ELVFGSSTFFGWAVDVAKSAG-TTNVTFITGGAYGTLAYTS-MW 129 (433)
Q Consensus 85 ~~~---------------------------------~~~vv~d~~~~~a~~vA~~lg-iP~v~~~~~~~~~~~~~~~-~~ 129 (433)
+.. -+++++|.+..|...+|.... ++...+++..+.......+ +.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 79 EDDDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc
Confidence 100 229999998778888887775 8888888887765544332 11
Q ss_pred ccCCCCCCCC--CcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhh----cccceeEecc-hhccchhhhh
Q 041323 130 FNLPHRKTNS--DEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQS----FQSYEMLCKT-AEDIEPGALQ 202 (433)
Q Consensus 130 ~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~t-~~~le~~~~~ 202 (433)
.+.|...... +.+.++++..+ +....++....................... .....++.++ +..++.....
T Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~ 236 (496)
T KOG1192|consen 159 SYVPSPFSLSSGDDMSFPERVPN--LIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLL 236 (496)
T ss_pred cccCcccCccccccCcHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCccc
Confidence 2233222111 11222222110 111112221111110000001111111111 1122344444 5666655444
Q ss_pred cc-cccCCCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCC--cEEEEEeCCCC---CCCHHHHHH
Q 041323 203 WP-RNYTKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPG--SVLYISFGSQN---TISSSQTME 276 (433)
Q Consensus 203 ~~-~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~vv~vs~GS~~---~~~~~~~~~ 276 (433)
.. .....++++.|||+..... ......+.+|++..+.. +||||||||+. ..+.++..+
T Consensus 237 ~~~~~~~~~~v~~IG~l~~~~~----------------~~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~ 300 (496)
T KOG1192|consen 237 DFEPRPLLPKVIPIGPLHVKDS----------------KQKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKE 300 (496)
T ss_pred CCCCCCCCCCceEECcEEecCc----------------cccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHH
Confidence 44 2224689999999997631 11112566777766654 89999999998 788999999
Q ss_pred HHHHHHhC-CCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHh-hccCCcceEEecCCchhHH
Q 041323 277 LAIGLEAS-AKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEI-LSHKSTGAFLSYCGWNSAL 354 (433)
Q Consensus 277 ~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~i-l~~~~v~~~ithgG~~s~~ 354 (433)
++.++++. +++|+|+++... ...+++++.++ . ..|+...+|+||.++ |+|+++++|||||||||++
T Consensus 301 l~~~l~~~~~~~FiW~~~~~~---------~~~~~~~~~~~-~--~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~ 368 (496)
T KOG1192|consen 301 LAKALESLQGVTFLWKYRPDD---------SIYFPEGLPNR-G--RGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTL 368 (496)
T ss_pred HHHHHHhCCCceEEEEecCCc---------chhhhhcCCCC-C--cCceEEecCCCcHHHhcCCCcCcEEEECCcccHHH
Confidence 99999999 889999998642 01122222211 1 357888899999998 5999999999999999999
Q ss_pred HHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcC
Q 041323 355 ESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRHQ 433 (433)
Q Consensus 355 eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~~ 433 (433)
|++++|||+|++|+++||+.||++++++ |.|..+.. .+++.+++..++.++++++ +|+++++++++.+++|
T Consensus 369 E~~~~GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~---~~~~~~~~~~~~~~il~~~----~y~~~~~~l~~~~~~~ 439 (496)
T KOG1192|consen 369 ESIYSGVPMVCVPLFGDQPLNARLLVRH-GGGGVLDK---RDLVSEELLEAIKEILENE----EYKEAAKRLSEILRDQ 439 (496)
T ss_pred HHHhcCCceecCCccccchhHHHHHHhC-CCEEEEeh---hhcCcHHHHHHHHHHHcCh----HHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999998 66655555 4566666999999999999 8999999999987753
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=4.8e-40 Score=328.62 Aligned_cols=345 Identities=14% Similarity=0.137 Sum_probs=229.8
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCC-CC-
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLP-PN- 83 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~-~~- 83 (433)
|||+|+++|+.||++|+++||++|++ |||+|+|++++.+...++. .|++|.+++......... ..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~-rGh~V~~~t~~~~~~~v~~------------~G~~~~~~~~~~~~~~~~~~~~ 67 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRA-AGHEVRVATPPEFADLVEA------------AGLEFVPVGGDPDELLASPERN 67 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHH-CCCeEEEeeCHhHHHHHHH------------cCCceeeCCCCHHHHHhhhhhc
Confidence 69999999999999999999999999 9999999999988888887 788888776421100000 00
Q ss_pred -------CC--------------------------CCccEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhc
Q 041323 84 -------TE--------------------------NRELVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWF 130 (433)
Q Consensus 84 -------~~--------------------------~~~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~ 130 (433)
.. ...|+||+|.++.++..+|+++|||++.+++++........++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~-- 145 (401)
T cd03784 68 AGLLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPP-- 145 (401)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCc--
Confidence 00 0112999999888999999999999999988764322111000
Q ss_pred cCCCCCCCCCcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhhhccc--ceeEecchh--ccchhhhhcccc
Q 041323 131 NLPHRKTNSDEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQS--YEMLCKTAE--DIEPGALQWPRN 206 (433)
Q Consensus 131 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~t~~--~le~~~~~~~~~ 206 (433)
+ +... ......+...................+.-. ......... ....+.+..+..
T Consensus 146 -------------~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (401)
T cd03784 146 -------------L-GRAN------LRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPP 205 (401)
T ss_pred -------------c-chHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCC
Confidence 0 0000 000000000000000011111111111000 000000000 001223333445
Q ss_pred cCCCCeeEeC-ccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCH-HHHHHHHHHHHhC
Q 041323 207 YTKLPVWTIG-PLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISS-SQTMELAIGLEAS 284 (433)
Q Consensus 207 ~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~-~~~~~~~~al~~~ 284 (433)
.|+++..++| ++..... ....+.++..|++.. +++|||++||+..... ..+..+++++...
T Consensus 206 ~~~~~~~~~g~~~~~~~~---------------~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~ 268 (401)
T cd03784 206 DWPRFDLVTGYGFRDVPY---------------NGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATL 268 (401)
T ss_pred CccccCcEeCCCCCCCCC---------------CCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHc
Confidence 5667777775 3332221 123466788898764 5689999999986444 5677799999999
Q ss_pred CCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceE
Q 041323 285 AKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMI 364 (433)
Q Consensus 285 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i 364 (433)
+.++||+++... ..... .+.|+.+.+|+||.++|++++ +||||||+||++|++++|||+|
T Consensus 269 ~~~~i~~~g~~~-------~~~~~-----------~~~~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~v 328 (401)
T cd03784 269 GQRAILSLGWGG-------LGAED-----------LPDNVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQL 328 (401)
T ss_pred CCeEEEEccCcc-------ccccC-----------CCCceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCEE
Confidence 999999998642 00000 156899999999999999988 5999999999999999999999
Q ss_pred ecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 041323 365 GWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIR 431 (433)
Q Consensus 365 ~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~ 431 (433)
++|+..||+.||+++++ +|+|+.+.. ..++.++|.++|+++++++ ++++++++++.++
T Consensus 329 ~~P~~~dQ~~~a~~~~~-~G~g~~l~~---~~~~~~~l~~al~~~l~~~-----~~~~~~~~~~~~~ 386 (401)
T cd03784 329 VVPFFGDQPFWAARVAE-LGAGPALDP---RELTAERLAAALRRLLDPP-----SRRRAAALLRRIR 386 (401)
T ss_pred eeCCCCCcHHHHHHHHH-CCCCCCCCc---ccCCHHHHHHHHHHHhCHH-----HHHHHHHHHHHHH
Confidence 99999999999999999 599999987 5689999999999999865 5556666665543
No 26
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=5.4e-39 Score=319.99 Aligned_cols=346 Identities=19% Similarity=0.215 Sum_probs=233.1
Q ss_pred eCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCCC--CC--
Q 041323 11 LPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPNT--EN-- 86 (433)
Q Consensus 11 ~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~~--~~-- 86 (433)
+.+|++||++|++.||++|++ |||+|+|++++.+.+.+++ .|++|.+++......+..... .+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~-~Gh~V~~~~~~~~~~~v~~------------~G~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVA-RGHRVTYATTEEFAERVEA------------AGAEFVLYGSALPPPDNPPENTEEEPI 67 (392)
T ss_pred CCCCccccccccHHHHHHHHh-CCCeEEEEeCHHHHHHHHH------------cCCEEEecCCcCccccccccccCcchH
Confidence 468999999999999999999 9999999999999999998 788888777431110011000 00
Q ss_pred ------------------------CccEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhccCCCCCCCCCcc
Q 041323 87 ------------------------RELVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFNLPHRKTNSDEF 142 (433)
Q Consensus 87 ------------------------~~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 142 (433)
..++||+|.++.++..+|+++|||+|.+++.+.... ...++ ..|.. ....
T Consensus 68 ~~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~--~~~~~-~~~~~---~~~~ 141 (392)
T TIGR01426 68 DIIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE--EFEEM-VSPAG---EGSA 141 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc--ccccc-ccccc---hhhh
Confidence 112999999988999999999999998865432110 00000 00000 0000
Q ss_pred cCCCCCCC-ccccccchhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhcccccCCCCeeEeCccCCc
Q 041323 143 TLPGFPER-CHFHITQLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPRNYTKLPVWTIGPLLPQ 221 (433)
Q Consensus 143 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~~~~~~~vGp~~~~ 221 (433)
.......+ .......+..+..... ... ....... .......+..+ ++++.+....|+++++++||+...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~r~~~g-l~~--~~~~~~~--~~~~~~~l~~~-----~~~l~~~~~~~~~~~~~~Gp~~~~ 211 (392)
T TIGR01426 142 EEGAIAERGLAEYVARLSALLEEHG-ITT--PPVEFLA--APRRDLNLVYT-----PKAFQPAGETFDDSFTFVGPCIGD 211 (392)
T ss_pred hhhccccchhHHHHHHHHHHHHHhC-CCC--CCHHHHh--cCCcCcEEEeC-----ChHhCCCccccCCCeEEECCCCCC
Confidence 00000000 0000000000000000 000 0000000 00111122222 344444456788899999998754
Q ss_pred ccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCC
Q 041323 222 SYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLR 301 (433)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~ 301 (433)
.. +...|....+++++||||+||+.....+.+.++++++.+.+++++|.++...
T Consensus 212 ~~---------------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~----- 265 (392)
T TIGR01426 212 RK---------------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV----- 265 (392)
T ss_pred cc---------------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC-----
Confidence 31 0112666556678999999998766667888899999999999999987541
Q ss_pred ccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHHHHHH
Q 041323 302 GEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVE 381 (433)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~ 381 (433)
+ . +.+ ...+.|+.+.+|+||.++|++++ ++|||||+||++||+++|+|+|++|...||+.||.++++
T Consensus 266 -~--~----~~~----~~~~~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~ 332 (392)
T TIGR01426 266 -D--P----ADL----GELPPNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE 332 (392)
T ss_pred -C--h----hHh----ccCCCCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH
Confidence 0 0 111 11156888999999999999988 699999999999999999999999999999999999999
Q ss_pred HhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 382 EMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 382 ~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
+|+|+.+.. ..+++++|.++|+++|+|+ +|+++++++++.+++
T Consensus 333 -~g~g~~l~~---~~~~~~~l~~ai~~~l~~~----~~~~~~~~l~~~~~~ 375 (392)
T TIGR01426 333 -LGLGRHLPP---EEVTAEKLREAVLAVLSDP----RYAERLRKMRAEIRE 375 (392)
T ss_pred -CCCEEEecc---ccCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHH
Confidence 599999987 6789999999999999998 899999999988764
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-36 Score=300.44 Aligned_cols=349 Identities=16% Similarity=0.191 Sum_probs=218.9
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCC----CC
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDH----DL 80 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~----~l 80 (433)
+|||+++..|+.||++|.++||++|.+ +||+|+|++++.+.+.+++ .|+.|...+..+... +.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~-~gheV~~~~~~~~~~~ve~------------ag~~f~~~~~~~~~~~~~~~~ 67 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRR-RGHEVVFASTGKFKEFVEA------------AGLAFVAYPIRDSELATEDGK 67 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHh-cCCeEEEEeCHHHHHHHHH------------hCcceeeccccCChhhhhhhh
Confidence 479999999999999999999999999 9999999999999999999 455555544321100 00
Q ss_pred CCCCCCCc----------------------cEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhccCCCCCCC
Q 041323 81 PPNTENRE----------------------LVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFNLPHRKTN 138 (433)
Q Consensus 81 ~~~~~~~~----------------------~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~ 138 (433)
........ +.++.|... +...+++..++|++.......+.......++.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 142 (406)
T COG1819 68 FAGVKSFRRLLQQFKKLIRELLELLRELEPDLVVDDARL-SLGLAARLLGIPVVGINVAPYTPLPAAGLPLPPVGI---- 142 (406)
T ss_pred hhccchhHHHhhhhhhhhHHHHHHHHhcchhhhhcchhh-hhhhhhhhcccchhhhhhhhccCCcccccCcccccc----
Confidence 00000000 144444433 333678888998887544433221111111111000
Q ss_pred CCcccCCC--CCCC-cccc-ccc--hhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhcc--c-ccCC
Q 041323 139 SDEFTLPG--FPER-CHFH-ITQ--LHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWP--R-NYTK 209 (433)
Q Consensus 139 ~~~~~~~~--~~~~-~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~--~-~~~~ 209 (433)
...+..+. ++.. +... ..+ ......... ........+....+... ..++..+.+.. . ..++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~p 212 (406)
T COG1819 143 AGKLPIPLYPLPPRLVRPLIFARSWLPKLVVRRN--LGLELGLPNIRRLFASG--------PLLEIAYTDVLFPPGDRLP 212 (406)
T ss_pred cccccccccccChhhccccccchhhhhhhhhhhh--ccccccccchHHHhcCC--------CCccccccccccCCCCCCC
Confidence 00011111 1100 0000 000 000000000 00000000000111111 11111111100 0 1122
Q ss_pred CCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEE
Q 041323 210 LPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFL 289 (433)
Q Consensus 210 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l 289 (433)
....++||+.... ..+...|. ..++++||+|+||.... .+.+..+++++.+.+.++|
T Consensus 213 ~~~~~~~~~~~~~--------------------~~~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi 269 (406)
T COG1819 213 FIGPYIGPLLGEA--------------------ANELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVI 269 (406)
T ss_pred CCcCccccccccc--------------------cccCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEE
Confidence 3344455554333 22333443 33467999999999865 7888899999999999999
Q ss_pred EEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceEecccc
Q 041323 290 WVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIA 369 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~ 369 (433)
..++... .....+ +.|+.+.+|+||.++|++++ +||||||+||++|||++|||+|++|..
T Consensus 270 ~~~~~~~-------~~~~~~-----------p~n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~~ 329 (406)
T COG1819 270 VSLGGAR-------DTLVNV-----------PDNVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPDG 329 (406)
T ss_pred Eeccccc-------cccccC-----------CCceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecCC
Confidence 9997621 101112 67899999999999999999 599999999999999999999999999
Q ss_pred cchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 370 AEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 370 ~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
.||+.||.++++ +|+|+.+.. +.++++.++++|+++|+|+ +|+++++++++.++.
T Consensus 330 ~DQ~~nA~rve~-~G~G~~l~~---~~l~~~~l~~av~~vL~~~----~~~~~~~~~~~~~~~ 384 (406)
T COG1819 330 ADQPLNAERVEE-LGAGIALPF---EELTEERLRAAVNEVLADD----SYRRAAERLAEEFKE 384 (406)
T ss_pred cchhHHHHHHHH-cCCceecCc---ccCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhh
Confidence 999999999999 599999998 7899999999999999999 999999999999875
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.92 E-value=5.8e-23 Score=200.72 Aligned_cols=175 Identities=19% Similarity=0.227 Sum_probs=124.1
Q ss_pred CCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCH-HHHHHHHHHHHhCCCeE
Q 041323 210 LPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISS-SQTMELAIGLEASAKSF 288 (433)
Q Consensus 210 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~-~~~~~~~~al~~~~~~~ 288 (433)
.+++++|+.+.+... ....++..+.++-.+++++|+|+.||.+.... +.+.+++..+.. ++++
T Consensus 154 ~k~~~tG~Pvr~~~~---------------~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~v 217 (352)
T PRK12446 154 EKVIYTGSPVREEVL---------------KGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQI 217 (352)
T ss_pred CCeEEECCcCCcccc---------------cccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEE
Confidence 467899987765421 01122223333434556799999999997554 335555555533 4899
Q ss_pred EEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEeccc-ChH-HhhccCCcceEEecCCchhHHHHHhcCCceEec
Q 041323 289 LWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWA-PQL-EILSHKSTGAFLSYCGWNSALESLSQGLPMIGW 366 (433)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-pq~-~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~ 366 (433)
+|++|.+. +...... ..++.+.+|+ +++ +++++++ ++|||||.+|++|++++|+|+|++
T Consensus 218 v~~~G~~~----------------~~~~~~~-~~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~i 278 (352)
T PRK12446 218 VHLCGKGN----------------LDDSLQN-KEGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLI 278 (352)
T ss_pred EEEeCCch----------------HHHHHhh-cCCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEE
Confidence 99998641 1111110 1244556887 434 6888999 699999999999999999999999
Q ss_pred ccc-----cchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 041323 367 PIA-----AEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKI 426 (433)
Q Consensus 367 P~~-----~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l 426 (433)
|+. .||..||..+++. |+|..+.. .+++++.|.++|.++++|++ .++++++++
T Consensus 279 P~~~~~~~~~Q~~Na~~l~~~-g~~~~l~~---~~~~~~~l~~~l~~ll~~~~---~~~~~~~~~ 336 (352)
T PRK12446 279 PLSKFASRGDQILNAESFERQ-GYASVLYE---EDVTVNSLIKHVEELSHNNE---KYKTALKKY 336 (352)
T ss_pred cCCCCCCCchHHHHHHHHHHC-CCEEEcch---hcCCHHHHHHHHHHHHcCHH---HHHHHHHHc
Confidence 985 4899999999995 99999987 78899999999999998752 455555443
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=4e-20 Score=178.99 Aligned_cols=151 Identities=21% Similarity=0.270 Sum_probs=120.2
Q ss_pred CCcEEEEEeCCCCCCCH-HHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCC-eEEecccCh
Q 041323 255 PGSVLYISFGSQNTISS-SQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQG-LLVRNWAPQ 332 (433)
Q Consensus 255 ~~~vv~vs~GS~~~~~~-~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~pq 332 (433)
++++|+|+.||++...- +.+.+++..+.+ ++.+++.+|.+. .+....... ..+ +.+.+|.++
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~-------------~~~~~~~~~--~~~~~~v~~f~~d 245 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND-------------LEELKSAYN--ELGVVRVLPFIDD 245 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch-------------HHHHHHHHh--hcCcEEEeeHHhh
Confidence 46799999999986443 335555555555 688999988651 122222222 233 788899988
Q ss_pred HH-hhccCCcceEEecCCchhHHHHHhcCCceEecccc----cchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHH
Q 041323 333 LE-ILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIA----AEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIE 407 (433)
Q Consensus 333 ~~-il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~----~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~ 407 (433)
+. +++.++ ++||++|++|+.|++++|+|+|.+|+. .||..||..++++ |.|..++. .++|.+++.+.|.
T Consensus 246 m~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~~---~~lt~~~l~~~i~ 319 (357)
T COG0707 246 MAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIRQ---SELTPEKLAELIL 319 (357)
T ss_pred HHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEecc---ccCCHHHHHHHHH
Confidence 75 777777 699999999999999999999999984 3888899999997 99999998 7899999999999
Q ss_pred HHhcCCchhHHHHHHHHHHH
Q 041323 408 MVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 408 ~vl~~~~~~~~~~~~a~~l~ 427 (433)
+++.++++.+.|++++++++
T Consensus 320 ~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 320 RLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HHhcCHHHHHHHHHHHHhcC
Confidence 99999878889999988774
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.82 E-value=1.8e-18 Score=167.49 Aligned_cols=282 Identities=21% Similarity=0.272 Sum_probs=173.5
Q ss_pred cEEEEeCCC-CcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCC---CCCCCC
Q 041323 6 EHTVMLPLM-AHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCS---LDHDLP 81 (433)
Q Consensus 6 ~~il~~~~~-~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~---~~~~l~ 81 (433)
|||++...+ +.||+...++||++| + ||+|+|++.....+.+.+ . +.+..++... ....+.
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L-r--g~~v~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL-R--GHEVTFITSGPAPEFLKP------------R-FPVREIPGLGPIQENGRLD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH-c--cCceEEEEcCCcHHHhcc------------c-cCEEEccCceEeccCCccc
Confidence 678888765 889999999999999 6 799999998766555543 1 2233222110 000000
Q ss_pred C------CC------------------CCCccEEEEcCCcccHHHHHHHhCCceEEEecchHHHHHHHhhhhccCCCCCC
Q 041323 82 P------NT------------------ENRELVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFNLPHRKT 137 (433)
Q Consensus 82 ~------~~------------------~~~~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~ 137 (433)
. .. +...++||+|. .+.+..+|+..|||++.+.......
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~---------------- 127 (318)
T PF13528_consen 65 RWKTVRNNIRWLARLARRIRREIRWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFL---------------- 127 (318)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcc----------------
Confidence 0 00 00012999995 4456778899999999875554321
Q ss_pred CCCcccCCCCCCCccccccchhhhhhhcCCCChHHHhHHHHhhh--hcccceeEecchhccchhhhhcccccCCCCeeEe
Q 041323 138 NSDEFTLPGFPERCHFHITQLHKYWRMADGSDDWSKFMQPNITQ--SFQSYEMLCKTAEDIEPGALQWPRNYTKLPVWTI 215 (433)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~t~~~le~~~~~~~~~~~~~~~~~v 215 (433)
.+... +... ......+.+.... ...+...+.-++. .+. ....++.++
T Consensus 128 ------~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~-~~~~~~~~~ 176 (318)
T PF13528_consen 128 ------HPNFW----LPWD------------QDFGRLIERYIDRYHFPPADRRLALSFY--------PPL-PPFFRVPFV 176 (318)
T ss_pred ------cccCC----cchh------------hhHHHHHHHhhhhccCCcccceecCCcc--------ccc-ccccccccc
Confidence 00000 0000 0000111111111 2222222322221 001 112345578
Q ss_pred CccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCC-CeEEEEEcC
Q 041323 216 GPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASA-KSFLWVIRP 294 (433)
Q Consensus 216 Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~-~~~l~~~~~ 294 (433)
||+...... ..+ ..+.+.|+|++|..... .++++++..+ +++++. +.
T Consensus 177 ~p~~~~~~~----------------~~~---------~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~ 224 (318)
T PF13528_consen 177 GPIIRPEIR----------------ELP---------PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GP 224 (318)
T ss_pred Cchhccccc----------------ccC---------CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cC
Confidence 888765421 000 11245799999988642 5566777655 676665 53
Q ss_pred CCCCCCCccccccCCchhHHHHhhhcCCCeEEeccc--ChHHhhccCCcceEEecCCchhHHHHHhcCCceEeccc--cc
Q 041323 295 PVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWA--PQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPI--AA 370 (433)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~--~~ 370 (433)
.. . -+. ..|+.+.+|. ...++|+.++ ++|||||+||++|++++|+|+|++|. ..
T Consensus 225 ~~---------~--~~~---------~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~ 282 (318)
T PF13528_consen 225 NA---------A--DPR---------PGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPRPGQD 282 (318)
T ss_pred Cc---------c--ccc---------CCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeCCCCc
Confidence 31 0 001 4688888876 4556888888 69999999999999999999999999 78
Q ss_pred chhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHH
Q 041323 371 EQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMV 409 (433)
Q Consensus 371 dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~v 409 (433)
+|..||..+++ +|+|+.+.. .+++++.|+++|+++
T Consensus 283 EQ~~~a~~l~~-~G~~~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 283 EQEYNARKLEE-LGLGIVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred hHHHHHHHHHH-CCCeEEccc---ccCCHHHHHHHHhcC
Confidence 99999999999 599999987 789999999998764
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.75 E-value=3.8e-16 Score=151.34 Aligned_cols=124 Identities=17% Similarity=0.208 Sum_probs=88.3
Q ss_pred CcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccC--hH
Q 041323 256 GSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAP--QL 333 (433)
Q Consensus 256 ~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--q~ 333 (433)
.+.|+|.+||... ..+++++.+.+. +.++++... . ..+.+ +.|+.+.+|.| ..
T Consensus 188 ~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~-------~----~~~~~-------~~~v~~~~~~~~~~~ 242 (321)
T TIGR00661 188 EDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYE-------V----AKNSY-------NENVEIRRITTDNFK 242 (321)
T ss_pred CCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCC-------C----Ccccc-------CCCEEEEECChHHHH
Confidence 3468888888642 345666766542 233333220 0 11111 45788889997 34
Q ss_pred HhhccCCcceEEecCCchhHHHHHhcCCceEeccccc--chhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhc
Q 041323 334 EILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAA--EQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMD 411 (433)
Q Consensus 334 ~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~--dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~ 411 (433)
+.|+.++ ++|||||++|++|++++|+|++++|... ||..||..+++. |+|+.++. .++ ++.+++.++++
T Consensus 243 ~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~---~~~---~~~~~~~~~~~ 313 (321)
T TIGR00661 243 ELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEY---KEL---RLLEAILDIRN 313 (321)
T ss_pred HHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcCh---hhH---HHHHHHHhccc
Confidence 5667777 6999999999999999999999999965 899999999995 99999986 444 66667777776
Q ss_pred CC
Q 041323 412 EA 413 (433)
Q Consensus 412 ~~ 413 (433)
++
T Consensus 314 ~~ 315 (321)
T TIGR00661 314 MK 315 (321)
T ss_pred cc
Confidence 66
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.70 E-value=7.1e-15 Score=144.67 Aligned_cols=150 Identities=18% Similarity=0.203 Sum_probs=105.9
Q ss_pred CCcEEEEEeCCCCCCCHHHHHH-HHHHHHhCC--CeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccC
Q 041323 255 PGSVLYISFGSQNTISSSQTME-LAIGLEASA--KSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAP 331 (433)
Q Consensus 255 ~~~vv~vs~GS~~~~~~~~~~~-~~~al~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 331 (433)
+..+|++..|+... ..... +.+++.+.. ..++|.+|... . +.+.+... .+-++.+.+|..
T Consensus 182 ~~~~i~~~gg~~~~---~~~~~~l~~a~~~~~~~~~~~~~~G~g~------------~-~~~~~~~~-~~~~v~~~g~~~ 244 (357)
T PRK00726 182 GKPTLLVVGGSQGA---RVLNEAVPEALALLPEALQVIHQTGKGD------------L-EEVRAAYA-AGINAEVVPFID 244 (357)
T ss_pred CCeEEEEECCcHhH---HHHHHHHHHHHHHhhhCcEEEEEcCCCc------------H-HHHHHHhh-cCCcEEEeehHh
Confidence 34567776666532 22222 235554432 24566677541 1 22222221 133477889984
Q ss_pred -hHHhhccCCcceEEecCCchhHHHHHhcCCceEeccc----ccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHH
Q 041323 332 -QLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPI----AAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVI 406 (433)
Q Consensus 332 -q~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~----~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai 406 (433)
..++++.++ ++|+|+|.++++||+++|+|+|++|. ..||..|+..+.+. |.|..+.. ++++++.++++|
T Consensus 245 ~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~---~~~~~~~l~~~i 318 (357)
T PRK00726 245 DMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQ---SDLTPEKLAEKL 318 (357)
T ss_pred hHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEc---ccCCHHHHHHHH
Confidence 457898999 49999999999999999999999997 36899999999996 99999986 667899999999
Q ss_pred HHHhcCCchhHHHHHHHHHHH
Q 041323 407 EMVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 407 ~~vl~~~~~~~~~~~~a~~l~ 427 (433)
.++++|++..++|+++++++.
T Consensus 319 ~~ll~~~~~~~~~~~~~~~~~ 339 (357)
T PRK00726 319 LELLSDPERLEAMAEAARALG 339 (357)
T ss_pred HHHHcCHHHHHHHHHHHHhcC
Confidence 999999866666777766643
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.69 E-value=1.1e-14 Score=142.61 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=109.5
Q ss_pred CCCCcEEEEEeCCCCCCCH-HHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEeccc-
Q 041323 253 HHPGSVLYISFGSQNTISS-SQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWA- 330 (433)
Q Consensus 253 ~~~~~vv~vs~GS~~~~~~-~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 330 (433)
.++..+|++..|+...... +.+.+++..+.+.+..+++.+|... .+.+.+.+.+...++.+.+|.
T Consensus 178 ~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~-------------~~~l~~~~~~~~~~v~~~g~~~ 244 (350)
T cd03785 178 RPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD-------------LEEVKKAYEELGVNYEVFPFID 244 (350)
T ss_pred CCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc-------------HHHHHHHHhccCCCeEEeehhh
Confidence 3344567776676643211 2233444555444556677776431 122333232223578888998
Q ss_pred ChHHhhccCCcceEEecCCchhHHHHHhcCCceEeccc----ccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHH
Q 041323 331 PQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPI----AAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVI 406 (433)
Q Consensus 331 pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~----~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai 406 (433)
+..++|+.++ ++|+++|.+|+.||+++|+|+|+.|. ..+|..|+..+.+. |.|..+.. .+.+.+++.++|
T Consensus 245 ~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~---~~~~~~~l~~~i 318 (350)
T cd03785 245 DMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQ---EELTPERLAAAL 318 (350)
T ss_pred hHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEec---CCCCHHHHHHHH
Confidence 4556888888 59999999999999999999999986 35788999999995 99999986 446899999999
Q ss_pred HHHhcCCchhHHHHHHHHHHH
Q 041323 407 EMVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 407 ~~vl~~~~~~~~~~~~a~~l~ 427 (433)
++++++++..+.|++++++..
T Consensus 319 ~~ll~~~~~~~~~~~~~~~~~ 339 (350)
T cd03785 319 LELLSDPERLKAMAEAARSLA 339 (350)
T ss_pred HHHhcCHHHHHHHHHHHHhcC
Confidence 999988866667777777653
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.58 E-value=1e-12 Score=128.66 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=75.2
Q ss_pred ChHHhhccCCcceEEecCCchhHHHHHhcCCceEecccc---cchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHH
Q 041323 331 PQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIA---AEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIE 407 (433)
Q Consensus 331 pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~---~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~ 407 (433)
+-.++|+.++ ++|+++|.+++.||+++|+|+|++|.. .+|..|+..+.+. |.|..+.. ++.+.+++.++|+
T Consensus 243 ~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~---~~~~~~~l~~~i~ 316 (348)
T TIGR01133 243 NMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQ---KELLPEKLLEALL 316 (348)
T ss_pred CHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEec---ccCCHHHHHHHHH
Confidence 4567888888 599999988999999999999998863 4678899999985 99999876 5667999999999
Q ss_pred HHhcCCchhHHHHHHHHHH
Q 041323 408 MVMDEAGKGQEMKAKAEKI 426 (433)
Q Consensus 408 ~vl~~~~~~~~~~~~a~~l 426 (433)
++++|++..++|.+++++.
T Consensus 317 ~ll~~~~~~~~~~~~~~~~ 335 (348)
T TIGR01133 317 KLLLDPANLEAMAEAARKL 335 (348)
T ss_pred HHHcCHHHHHHHHHHHHhc
Confidence 9999886566677777654
No 35
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.53 E-value=5.2e-16 Score=135.82 Aligned_cols=138 Identities=19% Similarity=0.272 Sum_probs=97.4
Q ss_pred EEEEEeCCCCCCCH-HHHHHHHHHHHh--CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccC-hH
Q 041323 258 VLYISFGSQNTISS-SQTMELAIGLEA--SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAP-QL 333 (433)
Q Consensus 258 vv~vs~GS~~~~~~-~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-q~ 333 (433)
+|+|++||.+...- +.+..+...+.. ...++++++|... . +...........++.+.+|.+ ..
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~-------~------~~~~~~~~~~~~~v~~~~~~~~m~ 67 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN-------Y------EELKIKVENFNPNVKVFGFVDNMA 67 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE-------C------HHHCCCHCCTTCCCEEECSSSSHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc-------H------HHHHHHHhccCCcEEEEechhhHH
Confidence 48999998874211 112233333333 2578999998651 0 000000110025788999999 66
Q ss_pred HhhccCCcceEEecCCchhHHHHHhcCCceEeccccc----chhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHH
Q 041323 334 EILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAA----EQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMV 409 (433)
Q Consensus 334 ~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~----dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~v 409 (433)
+++..++ ++|||||+||++|++++|+|+|++|... ||..||..+++. |+|..+.. ...+.++|.++|.++
T Consensus 68 ~~m~~aD--lvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~---~~~~~~~L~~~i~~l 141 (167)
T PF04101_consen 68 ELMAAAD--LVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDE---SELNPEELAEAIEEL 141 (167)
T ss_dssp HHHHHHS--EEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSEC---CC-SCCCHHHHHHCH
T ss_pred HHHHHcC--EEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCc---ccCCHHHHHHHHHHH
Confidence 7999999 5999999999999999999999999988 999999999996 99999987 677789999999999
Q ss_pred hcCCc
Q 041323 410 MDEAG 414 (433)
Q Consensus 410 l~~~~ 414 (433)
+.++.
T Consensus 142 ~~~~~ 146 (167)
T PF04101_consen 142 LSDPE 146 (167)
T ss_dssp CCCHH
T ss_pred HcCcH
Confidence 98873
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.50 E-value=4.7e-13 Score=132.75 Aligned_cols=165 Identities=15% Similarity=0.087 Sum_probs=108.2
Q ss_pred HHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHh---C--CCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhc-
Q 041323 247 IEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEA---S--AKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEET- 320 (433)
Q Consensus 247 ~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~---~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 320 (433)
.+-+.-.++.++|.+..||....-......++++++. . +.++++...... ..+.+.......
T Consensus 182 r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~------------~~~~~~~~~~~~~ 249 (385)
T TIGR00215 182 REKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK------------RRLQFEQIKAEYG 249 (385)
T ss_pred HHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch------------hHHHHHHHHHHhC
Confidence 3333334456688888899864212234445544332 2 345655544321 111222111111
Q ss_pred -CCCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceEec----cccc---------chhhHHHHHHHHhcce
Q 041323 321 -KQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGW----PIAA---------EQTYNSKMLVEEMGMA 386 (433)
Q Consensus 321 -~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~----P~~~---------dQ~~na~~~~~~~G~g 386 (433)
...+....+ ....+++.++ ++|+.+|..|+ |++++|+|+|++ |+.. .|..|+..+.++ ++.
T Consensus 250 ~~~~v~~~~~-~~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~-~~~ 324 (385)
T TIGR00215 250 PDLQLHLIDG-DARKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR-LLV 324 (385)
T ss_pred CCCcEEEECc-hHHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC-ccc
Confidence 112322222 3345788888 59999999988 999999999999 8742 277799999996 998
Q ss_pred EEEccCCCCcccHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHHH
Q 041323 387 VELTRGVQSTIVGHDVKNVIEMVMDEA----GKGQEMKAKAEKIGRQIR 431 (433)
Q Consensus 387 ~~l~~~~~~~~~~~~l~~ai~~vl~~~----~~~~~~~~~a~~l~~~~~ 431 (433)
..+.. ++.|++.|.+.+.+++.|+ +..+.+++...++.+.+.
T Consensus 325 pel~q---~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (385)
T TIGR00215 325 PELLQ---EECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIY 370 (385)
T ss_pred hhhcC---CCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhc
Confidence 88876 7899999999999999998 777888888888877663
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.47 E-value=4e-12 Score=126.21 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=108.8
Q ss_pred CCCcEEEEEeCCCCCCCHHHHHHHHHHHHh-CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccCh
Q 041323 254 HPGSVLYISFGSQNTISSSQTMELAIGLEA-SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQ 332 (433)
Q Consensus 254 ~~~~vv~vs~GS~~~~~~~~~~~~~~al~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq 332 (433)
+++++|++..|+.... ..+..+++++.+ .+.+++++.|.+. .+-+.+.+..+..+.++.+.+|+++
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~-----------~~~~~l~~~~~~~~~~v~~~g~~~~ 266 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE-----------ALKQSLEDLQETNPDALKVFGYVEN 266 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH-----------HHHHHHHHHHhcCCCcEEEEechhh
Confidence 3456788888887632 234556667655 3577777776431 0112222222222357888899987
Q ss_pred H-HhhccCCcceEEecCCchhHHHHHhcCCceEec-ccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHh
Q 041323 333 L-EILSHKSTGAFLSYCGWNSALESLSQGLPMIGW-PIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVM 410 (433)
Q Consensus 333 ~-~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~-P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl 410 (433)
. ++++.++ ++|+..|..|+.||+++|+|+|+. |..+++..|+..+.+. |+|+... +.+++.++|.+++
T Consensus 267 ~~~l~~~aD--~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~~-------~~~~l~~~i~~ll 336 (380)
T PRK13609 267 IDELFRVTS--CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVIR-------DDEEVFAKTEALL 336 (380)
T ss_pred HHHHHHhcc--EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEEC-------CHHHHHHHHHHHH
Confidence 5 6888888 599999999999999999999984 6777788899999985 9988653 4689999999999
Q ss_pred cCCchhHHHHHHHHHHH
Q 041323 411 DEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 411 ~~~~~~~~~~~~a~~l~ 427 (433)
+|++..+.|+++++++.
T Consensus 337 ~~~~~~~~m~~~~~~~~ 353 (380)
T PRK13609 337 QDDMKLLQMKEAMKSLY 353 (380)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 98866677777776653
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.44 E-value=1.2e-11 Score=117.28 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=77.1
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHHHh--CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChH-
Q 041323 257 SVLYISFGSQNTISSSQTMELAIGLEA--SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQL- 333 (433)
Q Consensus 257 ~vv~vs~GS~~~~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~- 333 (433)
+.|+|+||..... .....++++|.+ .+.++.+++|... ...+.+.+.... ..|+.+..|.+++
T Consensus 171 ~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~~-----------~~~~~l~~~~~~-~~~i~~~~~~~~m~ 236 (279)
T TIGR03590 171 RRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSSN-----------PNLDELKKFAKE-YPNIILFIDVENMA 236 (279)
T ss_pred CeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCCC-----------cCHHHHHHHHHh-CCCEEEEeCHHHHH
Confidence 4689999855432 234556666665 3567888888651 112333332221 4578888999987
Q ss_pred HhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHHH
Q 041323 334 EILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKM 378 (433)
Q Consensus 334 ~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~ 378 (433)
++++.++ ++||+|| +|++|+++.|+|+|++|+..+|..||..
T Consensus 237 ~lm~~aD--l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 237 ELMNEAD--LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHHCC--EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 6899999 5999999 9999999999999999999999999875
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.34 E-value=2.8e-11 Score=120.06 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=62.1
Q ss_pred HHhhccCCcceEEecCCchhHHHHHhcCCceEeccccc--------chhhH-----HHHHHHHhcceEEEccCCCCcccH
Q 041323 333 LEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAA--------EQTYN-----SKMLVEEMGMAVELTRGVQSTIVG 399 (433)
Q Consensus 333 ~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~--------dQ~~n-----a~~~~~~~G~g~~l~~~~~~~~~~ 399 (433)
..+++.++ ++|+.+|.+++ |++++|+|+|++|... +|..| +..+++. +++..+.. ...++
T Consensus 256 ~~~~~~aD--l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~---~~~~~ 328 (380)
T PRK00025 256 REAMAAAD--AALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQ---EEATP 328 (380)
T ss_pred HHHHHhCC--EEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcC---CCCCH
Confidence 45788888 59999998887 9999999999985432 22222 1222221 22333333 45689
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 041323 400 HDVKNVIEMVMDEAGKGQEMKAKAEKIGRQ 429 (433)
Q Consensus 400 ~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~ 429 (433)
+++.++|.++++|++.+++|+++++++.+.
T Consensus 329 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 358 (380)
T PRK00025 329 EKLARALLPLLADGARRQALLEGFTELHQQ 358 (380)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 999999999999997777777777555544
No 40
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.29 E-value=1.1e-12 Score=111.06 Aligned_cols=98 Identities=23% Similarity=0.256 Sum_probs=75.7
Q ss_pred EEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCC----
Q 041323 8 TVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPN---- 83 (433)
Q Consensus 8 il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~---- 83 (433)
|+|++.|+.||++|+++||++|++ |||+|++++++.+.+.+++ .|++|++++.+. .++..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~-rGh~V~~~~~~~~~~~v~~------------~Gl~~~~~~~~~---~~~~~~~~~ 64 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRR-RGHEVRLATPPDFRERVEA------------AGLEFVPIPGDS---RLPRSLEPL 64 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHH-TT-EEEEEETGGGHHHHHH------------TT-EEEESSSCG---GGGHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhc-cCCeEEEeecccceecccc------------cCceEEEecCCc---CcCcccchh
Confidence 789999999999999999999999 9999999999999999988 899999988540 11100
Q ss_pred -------------------------------C-CCCccEEEEcCCcccHHHHHHHhCCceEEEecchHHH
Q 041323 84 -------------------------------T-ENRELVFGSSTFFGWAVDVAKSAGTTNVTFITGGAYG 121 (433)
Q Consensus 84 -------------------------------~-~~~~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~~~~ 121 (433)
. ....++++.+.....+..+||++|||++.....+.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 65 ANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 0 0001167777777788899999999999998887653
No 41
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.28 E-value=1.3e-09 Score=101.78 Aligned_cols=135 Identities=19% Similarity=0.293 Sum_probs=104.8
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHHHh-CCCe--EEEEEcCCCCCCCCccccccCCchhHHHHhh---hcCCCeEEeccc
Q 041323 257 SVLYISFGSQNTISSSQTMELAIGLEA-SAKS--FLWVIRPPVGFDLRGEFRSERLPEGFEERIE---ETKQGLLVRNWA 330 (433)
Q Consensus 257 ~vv~vs~GS~~~~~~~~~~~~~~al~~-~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~ 330 (433)
--|+||-|-... ..+.+.+.++|-.. .+.+ .+.++|.. +|+...+++. ....++.+.+|-
T Consensus 220 ~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~ivtGP~-------------MP~~~r~~l~~~A~~~p~i~I~~f~ 285 (400)
T COG4671 220 FDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLIVTGPF-------------MPEAQRQKLLASAPKRPHISIFEFR 285 (400)
T ss_pred ceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEEEeCCC-------------CCHHHHHHHHHhcccCCCeEEEEhh
Confidence 358888776542 55667776666554 4544 56666654 6766555443 123688899998
Q ss_pred ChHH-hhccCCcceEEecCCchhHHHHHhcCCceEecccc---cchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHH
Q 041323 331 PQLE-ILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIA---AEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVI 406 (433)
Q Consensus 331 pq~~-il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~---~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai 406 (433)
.+.. ++..+. .+|+-||+||+.|-|++|+|.+++|.. .+|-.-|.|+++ ||+.-++.. ++++++.++++|
T Consensus 286 ~~~~~ll~gA~--~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~-LGL~dvL~p---e~lt~~~La~al 359 (400)
T COG4671 286 NDFESLLAGAR--LVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEE-LGLVDVLLP---ENLTPQNLADAL 359 (400)
T ss_pred hhHHHHHHhhh--eeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHh-cCcceeeCc---ccCChHHHHHHH
Confidence 7765 666666 699999999999999999999999985 489999999999 799988887 889999999999
Q ss_pred HHHhc
Q 041323 407 EMVMD 411 (433)
Q Consensus 407 ~~vl~ 411 (433)
...++
T Consensus 360 ~~~l~ 364 (400)
T COG4671 360 KAALA 364 (400)
T ss_pred Hhccc
Confidence 98886
No 42
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.10 E-value=2.4e-09 Score=106.70 Aligned_cols=150 Identities=13% Similarity=0.201 Sum_probs=108.8
Q ss_pred CCCcEEEEEeCCCCCCCHHHHHHHHHHHHh--CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccC
Q 041323 254 HPGSVLYISFGSQNTISSSQTMELAIGLEA--SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAP 331 (433)
Q Consensus 254 ~~~~vv~vs~GS~~~~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 331 (433)
+++++|+++.|+.+. ...+..+++++.+ .+.++++++|.+. .+-+.+..... ...++.+.+|.+
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~-----------~l~~~l~~~~~-~~~~v~~~G~~~ 265 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK-----------ELKRSLTAKFK-SNENVLILGYTK 265 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH-----------HHHHHHHHHhc-cCCCeEEEeccc
Confidence 345688888998873 1334445555332 3567777776431 01112222111 134788889997
Q ss_pred hH-HhhccCCcceEEecCCchhHHHHHhcCCceEec-ccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHH
Q 041323 332 QL-EILSHKSTGAFLSYCGWNSALESLSQGLPMIGW-PIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMV 409 (433)
Q Consensus 332 q~-~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~-P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~v 409 (433)
+. ++++.++ ++|+..|..|+.||+++|+|+|+. |..++|..|+..+.+. |+|+... +.+++.++|.++
T Consensus 266 ~~~~~~~~aD--l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~-------~~~~l~~~i~~l 335 (391)
T PRK13608 266 HMNEWMASSQ--LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD-------TPEEAIKIVASL 335 (391)
T ss_pred hHHHHHHhhh--EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC-------CHHHHHHHHHHH
Confidence 65 5888888 499999999999999999999998 7777778899999996 9998764 578899999999
Q ss_pred hcCCchhHHHHHHHHHHH
Q 041323 410 MDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 410 l~~~~~~~~~~~~a~~l~ 427 (433)
++|++..++|++++++++
T Consensus 336 l~~~~~~~~m~~~~~~~~ 353 (391)
T PRK13608 336 TNGNEQLTNMISTMEQDK 353 (391)
T ss_pred hcCHHHHHHHHHHHHHhc
Confidence 998877788888888764
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.03 E-value=1.1e-08 Score=101.72 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=106.8
Q ss_pred hHHHhhhcCCCCcEEEEEeCCCCCCCHHH-HHHHHHHHH-----hCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhh
Q 041323 245 KIIEWLDLHHPGSVLYISFGSQNTISSSQ-TMELAIGLE-----ASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIE 318 (433)
Q Consensus 245 ~l~~~l~~~~~~~vv~vs~GS~~~~~~~~-~~~~~~al~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (433)
++.+-++-.++.++|++..|+........ +..+...+. ..+.++++++|.+. . +-+.+.+.
T Consensus 195 ~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~-------~----~~~~L~~~-- 261 (382)
T PLN02605 195 ELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK-------K----LQSKLESR-- 261 (382)
T ss_pred HHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH-------H----HHHHHHhh--
Confidence 34444444445567888777766433333 233332221 23466777777541 0 10111111
Q ss_pred hcCCCeEEecccChH-HhhccCCcceEEecCCchhHHHHHhcCCceEecccccchh-hHHHHHHHHhcceEEEccCCCCc
Q 041323 319 ETKQGLLVRNWAPQL-EILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQT-YNSKMLVEEMGMAVELTRGVQST 396 (433)
Q Consensus 319 ~~~~~v~~~~~~pq~-~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~-~na~~~~~~~G~g~~l~~~~~~~ 396 (433)
....++.+.+|+++. ++++.++ ++|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.+.
T Consensus 262 ~~~~~v~~~G~~~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~~------ 332 (382)
T PLN02605 262 DWKIPVKVRGFVTNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFSE------ 332 (382)
T ss_pred cccCCeEEEeccccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-CceeecC------
Confidence 013467788999866 4777888 5999999999999999999999988655555 699999986 9998653
Q ss_pred ccHHHHHHHHHHHhcC-CchhHHHHHHHHHHH
Q 041323 397 IVGHDVKNVIEMVMDE-AGKGQEMKAKAEKIG 427 (433)
Q Consensus 397 ~~~~~l~~ai~~vl~~-~~~~~~~~~~a~~l~ 427 (433)
+++++.++|.+++++ ++..+.|++++++..
T Consensus 333 -~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~ 363 (382)
T PLN02605 333 -SPKEIARIVAEWFGDKSDELEAMSENALKLA 363 (382)
T ss_pred -CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 589999999999987 656677887776653
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.01 E-value=3.5e-07 Score=89.14 Aligned_cols=142 Identities=9% Similarity=0.116 Sum_probs=93.8
Q ss_pred cEEEEEeCCCCC-CCHHHHHHHHHHHHhC-CCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHH
Q 041323 257 SVLYISFGSQNT-ISSSQTMELAIGLEAS-AKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLE 334 (433)
Q Consensus 257 ~vv~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~ 334 (433)
+.+++..|+... ...+.+.+++..+.+. +..+++ +|... + . +.+. ....++.+.+|+++.+
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i-~G~~~------~--~----~~~~----~~~~~v~~~g~~~~~~ 259 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVI-VGDGP------A--R----ARLE----ARYPNVHFLGFLDGEE 259 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEE-EeCCc------h--H----HHHh----ccCCcEEEEeccCHHH
Confidence 356677787653 2345555555555442 455444 44321 0 0 1111 1156888889998765
Q ss_pred ---hhccCCcceEEecCC----chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHH
Q 041323 335 ---ILSHKSTGAFLSYCG----WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIE 407 (433)
Q Consensus 335 ---il~~~~v~~~ithgG----~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~ 407 (433)
++..+++ +|..+. .+++.||+++|+|+|+.+..+ +...+.+. +.|..... -+.+++.++|.
T Consensus 260 ~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~~-----~~~~~l~~~i~ 327 (364)
T cd03814 260 LAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVEP-----GDAEAFAAALA 327 (364)
T ss_pred HHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcCC-----CCHHHHHHHHH
Confidence 6778885 775554 478999999999999887543 45566664 88888764 36788999999
Q ss_pred HHhcCCchhHHHHHHHHHHH
Q 041323 408 MVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 408 ~vl~~~~~~~~~~~~a~~l~ 427 (433)
+++.|++..+.+.+++++..
T Consensus 328 ~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 328 ALLADPELRRRMAARARAEA 347 (364)
T ss_pred HHHcCHHHHHHHHHHHHHHH
Confidence 99999866677777776654
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.00 E-value=8.9e-07 Score=90.41 Aligned_cols=142 Identities=13% Similarity=0.093 Sum_probs=91.8
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhC-CCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHH--
Q 041323 258 VLYISFGSQNTISSSQTMELAIGLEAS-AKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLE-- 334 (433)
Q Consensus 258 vv~vs~GS~~~~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~-- 334 (433)
.+++..|+... ...+..++++++.. +.+++ .+|.+. ..+.+.+... ..++.+.+|+++.+
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~G~------------~~~~l~~~~~--~~~V~f~G~v~~~ev~ 326 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGDGP------------YREELEKMFA--GTPTVFTGMLQGDELS 326 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeCCh------------HHHHHHHHhc--cCCeEEeccCCHHHHH
Confidence 45566687753 23355566777664 56655 444321 1122333333 45788889998654
Q ss_pred -hhccCCcceEEecCC----chhHHHHHhcCCceEecccccchhhHHHHHHH---HhcceEEEccCCCCcccHHHHHHHH
Q 041323 335 -ILSHKSTGAFLSYCG----WNSALESLSQGLPMIGWPIAAEQTYNSKMLVE---EMGMAVELTRGVQSTIVGHDVKNVI 406 (433)
Q Consensus 335 -il~~~~v~~~ithgG----~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~---~~G~g~~l~~~~~~~~~~~~l~~ai 406 (433)
+++.+++ ||.-.. ..++.||+++|+|+|+....+ ....+.+ . +.|..+.. + +.+++.++|
T Consensus 327 ~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~-~~G~lv~~---~--d~~~la~~i 394 (465)
T PLN02871 327 QAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEG-KTGFLYTP---G--DVDDCVEKL 394 (465)
T ss_pred HHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCC-CceEEeCC---C--CHHHHHHHH
Confidence 6777775 664332 357899999999999765432 2334444 4 77888865 2 679999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHH
Q 041323 407 EMVMDEAGKGQEMKAKAEKIGR 428 (433)
Q Consensus 407 ~~vl~~~~~~~~~~~~a~~l~~ 428 (433)
.++++|++..+.+.+++++..+
T Consensus 395 ~~ll~~~~~~~~~~~~a~~~~~ 416 (465)
T PLN02871 395 ETLLADPELRERMGAAAREEVE 416 (465)
T ss_pred HHHHhCHHHHHHHHHHHHHHHH
Confidence 9999988677778888877554
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.92 E-value=6.1e-07 Score=81.76 Aligned_cols=142 Identities=15% Similarity=0.189 Sum_probs=99.7
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccC-hHHhh
Q 041323 258 VLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAP-QLEIL 336 (433)
Q Consensus 258 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-q~~il 336 (433)
-|+|++|-.- +.....+++..|.+.++.+-+++|+.. + .++.+.++..+ ..++....... -..++
T Consensus 160 ~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~-------p----~l~~l~k~~~~-~~~i~~~~~~~dma~LM 225 (318)
T COG3980 160 DILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSN-------P----TLKNLRKRAEK-YPNINLYIDTNDMAELM 225 (318)
T ss_pred eEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCC-------c----chhHHHHHHhh-CCCeeeEecchhHHHHH
Confidence 3889887543 445677788888888877777777431 1 12333333322 34554444444 33578
Q ss_pred ccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchh
Q 041323 337 SHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKG 416 (433)
Q Consensus 337 ~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~ 416 (433)
..++ +.|+-+|. |+.|++.-|+|.+++|+...|---|...+. +|+-..+.. . ++.+.+.--+.++++|.
T Consensus 226 ke~d--~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~---~-l~~~~~~~~~~~i~~d~--- 294 (318)
T COG3980 226 KEAD--LAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGY---H-LKDLAKDYEILQIQKDY--- 294 (318)
T ss_pred Hhcc--hheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccC---C-CchHHHHHHHHHhhhCH---
Confidence 8888 58887775 899999999999999999999999999999 588877765 3 56677777788888887
Q ss_pred HHHHHHHHH
Q 041323 417 QEMKAKAEK 425 (433)
Q Consensus 417 ~~~~~~a~~ 425 (433)
..|++...
T Consensus 295 -~~rk~l~~ 302 (318)
T COG3980 295 -ARRKNLSF 302 (318)
T ss_pred -HHhhhhhh
Confidence 45554433
No 47
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.86 E-value=4.2e-06 Score=81.83 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=92.8
Q ss_pred CcEEEEEeCCCCC-CCHHHHHHHHHHHHhC-CCeEEEEEcCCCCCCCCccccccCCchhHHHHhh-hcCCCeEEecccCh
Q 041323 256 GSVLYISFGSQNT-ISSSQTMELAIGLEAS-AKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIE-ETKQGLLVRNWAPQ 332 (433)
Q Consensus 256 ~~vv~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~pq 332 (433)
++.+++..|+... ...+.+.+++..+.+. +.+++ .+|... ..+.+.+.+. ....++.+.+++++
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~-i~G~~~------------~~~~~~~~~~~~~~~~v~~~g~~~~ 285 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFL-IVGDGP------------EKEELKELAKALGLDNVTFLGRVPK 285 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEE-EeCCcc------------cHHHHHHHHHHcCCCcEEEeCCCCh
Confidence 3467777888764 2345555555555444 45544 445331 1122222111 12467888899986
Q ss_pred HH---hhccCCcceEEecCC-------chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHH
Q 041323 333 LE---ILSHKSTGAFLSYCG-------WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDV 402 (433)
Q Consensus 333 ~~---il~~~~v~~~ithgG-------~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l 402 (433)
.+ ++..+++.++-++.+ -+++.||+++|+|+|+.+..+.+. .+.+. +.|..+.. -+.+++
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~~-~~g~~~~~-----~~~~~l 355 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEEA-GAGLVVPP-----GDPEAL 355 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhccC-CcceEeCC-----CCHHHH
Confidence 65 567777522222221 234799999999999987665433 33342 67777764 278999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHH
Q 041323 403 KNVIEMVMDEAGKGQEMKAKAEKIGR 428 (433)
Q Consensus 403 ~~ai~~vl~~~~~~~~~~~~a~~l~~ 428 (433)
.++|.++++|++..+.+++++++...
T Consensus 356 ~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 356 AAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 99999999888777777777776654
No 48
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.76 E-value=1.1e-05 Score=78.51 Aligned_cols=148 Identities=11% Similarity=0.142 Sum_probs=93.9
Q ss_pred cEEEEEeCCCCC-CCHHHHHHHHHHHHh--CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhh--hcCCCeEEecccC
Q 041323 257 SVLYISFGSQNT-ISSSQTMELAIGLEA--SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIE--ETKQGLLVRNWAP 331 (433)
Q Consensus 257 ~vv~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p 331 (433)
+.+++..|+... ...+.+.+++..+.+ .+.++++.-++. ..+.+.+... ....++.+.+++|
T Consensus 202 ~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~-------------~~~~~~~~~~~~~~~~~v~~~g~~~ 268 (374)
T cd03817 202 EPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP-------------EREELEELARELGLADRVIFTGFVP 268 (374)
T ss_pred CeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc-------------hHHHHHHHHHHcCCCCcEEEeccCC
Confidence 356667787653 234555555555554 345555443221 1112222211 1246888889999
Q ss_pred hHH---hhccCCcceEEec----CCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHH
Q 041323 332 QLE---ILSHKSTGAFLSY----CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKN 404 (433)
Q Consensus 332 q~~---il~~~~v~~~ith----gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ 404 (433)
+.+ ++..+++ +|.- +...++.||+++|+|+|+... ...+..+.+. +.|..+.. .+ . ++.+
T Consensus 269 ~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~---~~--~-~~~~ 335 (374)
T cd03817 269 REELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP---GD--E-ALAE 335 (374)
T ss_pred hHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC---CC--H-HHHH
Confidence 765 5778886 5532 334789999999999998653 3345566664 78888875 22 2 8999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHH
Q 041323 405 VIEMVMDEAGKGQEMKAKAEKIGRQI 430 (433)
Q Consensus 405 ai~~vl~~~~~~~~~~~~a~~l~~~~ 430 (433)
++.+++++++..+.+++++++..+..
T Consensus 336 ~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 336 ALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 99999999866667888888776653
No 49
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.71 E-value=1.7e-05 Score=78.65 Aligned_cols=95 Identities=8% Similarity=0.112 Sum_probs=71.0
Q ss_pred CCCeEEecccChHH---hhccCCcceEEec----CCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCC
Q 041323 321 KQGLLVRNWAPQLE---ILSHKSTGAFLSY----CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGV 393 (433)
Q Consensus 321 ~~~v~~~~~~pq~~---il~~~~v~~~ith----gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~ 393 (433)
..++.+.+|+|+.+ ++..+++ ++.. +-..++.||+++|+|+|+-... .....+++. +.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCC--
Confidence 36788999999866 4777775 5533 2236899999999999976543 344556664 78888864
Q ss_pred CCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 041323 394 QSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 394 ~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~ 427 (433)
-+.+++.++|.+++++++..+.+.+++++..
T Consensus 353 ---~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 383 (398)
T cd03800 353 ---RDPEALAAALRRLLTDPALRRRLSRAGLRRA 383 (398)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 2689999999999998866777887777654
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.68 E-value=9.2e-06 Score=78.40 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=90.1
Q ss_pred CcEEEEEeCCCCC-CCHHHHHHHHHHHHh--CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccCh
Q 041323 256 GSVLYISFGSQNT-ISSSQTMELAIGLEA--SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQ 332 (433)
Q Consensus 256 ~~vv~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq 332 (433)
++.+++..|+... ...+.+.+.++.+.+ .+.++++ +|... . ............ ....++.+.++..+
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i-~G~~~------~--~~~~~~~~~~~~-~~~~~v~~~g~~~~ 256 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLL-VGDGD------E--ENPAAILEIEKL-GLEGRVEFLGFRDD 256 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEE-EcCCC------c--chhhHHHHHHhc-CCcceEEEeecccc
Confidence 3467778888763 234555555555554 3455444 44331 0 000000000111 11356777776544
Q ss_pred H-HhhccCCcceEEecC----CchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHH
Q 041323 333 L-EILSHKSTGAFLSYC----GWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIE 407 (433)
Q Consensus 333 ~-~il~~~~v~~~ithg----G~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~ 407 (433)
. .++..+++ +|.-. -.+++.||+++|+|+|+-+.. .....+.+. +.|..++. -+.+++.++|.
T Consensus 257 ~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~~-----~~~~~~~~~i~ 324 (359)
T cd03808 257 VPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFLVPP-----GDAEALADAIE 324 (359)
T ss_pred HHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEEECC-----CCHHHHHHHHH
Confidence 3 47788885 55433 257899999999999986543 344556654 78888764 36899999999
Q ss_pred HHhcCCchhHHHHHHHHHH
Q 041323 408 MVMDEAGKGQEMKAKAEKI 426 (433)
Q Consensus 408 ~vl~~~~~~~~~~~~a~~l 426 (433)
+++.+++..+.+.+++++.
T Consensus 325 ~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 325 RLIEDPELRARMGQAARKR 343 (359)
T ss_pred HHHhCHHHHHHHHHHHHHH
Confidence 9999886666777777666
No 51
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.68 E-value=3.4e-05 Score=75.20 Aligned_cols=147 Identities=12% Similarity=0.048 Sum_probs=93.2
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCC-CeEEEEEcCCCCCCCCccccccCCchhHHHHhh--hcCCCeEEecccChHH
Q 041323 258 VLYISFGSQNTISSSQTMELAIGLEASA-KSFLWVIRPPVGFDLRGEFRSERLPEGFEERIE--ETKQGLLVRNWAPQLE 334 (433)
Q Consensus 258 vv~vs~GS~~~~~~~~~~~~~~al~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~pq~~ 334 (433)
.+++..|+... ......+++++.+.. .++++. |... ..+.+....+ ....++.+.+|+|+.+
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~-G~g~------------~~~~~~~~~~~~~~~~~V~~~g~v~~~~ 256 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIV-GEGP------------LEAELEALAAALGLLDRVRFLGRLDDEE 256 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEEE-eCCh------------hHHHHHHHHHhcCCcceEEEcCCCCHHH
Confidence 46677787653 233445666666655 554443 3221 1122222221 1246899999999754
Q ss_pred ---hhccCCcceEEec---CC-chhHHHHHhcCCceEecccccchhhHHHHHHH-HhcceEEEccCCCCcccHHHHHHHH
Q 041323 335 ---ILSHKSTGAFLSY---CG-WNSALESLSQGLPMIGWPIAAEQTYNSKMLVE-EMGMAVELTRGVQSTIVGHDVKNVI 406 (433)
Q Consensus 335 ---il~~~~v~~~ith---gG-~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~-~~G~g~~l~~~~~~~~~~~~l~~ai 406 (433)
++..+++.++.++ -| ..++.||+++|+|+|+-...+... .+.. . +.|..... -+.+++.++|
T Consensus 257 ~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~-~~g~~~~~-----~d~~~~~~~i 326 (357)
T cd03795 257 KAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YVNLHG-VTGLVVPP-----GDPAALAEAI 326 (357)
T ss_pred HHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HHhhCC-CceEEeCC-----CCHHHHHHHH
Confidence 6777886333332 33 347999999999999876544433 3332 4 67877764 3689999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHHH
Q 041323 407 EMVMDEAGKGQEMKAKAEKIGRQ 429 (433)
Q Consensus 407 ~~vl~~~~~~~~~~~~a~~l~~~ 429 (433)
.++++|++..+.+++++++..+.
T Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 327 RRLLEDPELRERLGEAARERAEE 349 (357)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHH
Confidence 99999987777888888776543
No 52
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.65 E-value=8.9e-05 Score=74.58 Aligned_cols=93 Identities=13% Similarity=0.228 Sum_probs=67.6
Q ss_pred CCeEEe-cccChHH---hhccCCcceEEe-c---CC---chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEc
Q 041323 322 QGLLVR-NWAPQLE---ILSHKSTGAFLS-Y---CG---WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELT 390 (433)
Q Consensus 322 ~~v~~~-~~~pq~~---il~~~~v~~~it-h---gG---~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~ 390 (433)
.+++.. +|+|..+ +|+.+++ +|. + -| -+++.||+++|+|+|+... ......+++. +.|..+.
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEEC
Confidence 455544 5888555 5777886 552 1 12 3479999999999998643 2445566664 7888873
Q ss_pred cCCCCcccHHHHHHHHHHHhcC---CchhHHHHHHHHHHHH
Q 041323 391 RGVQSTIVGHDVKNVIEMVMDE---AGKGQEMKAKAEKIGR 428 (433)
Q Consensus 391 ~~~~~~~~~~~l~~ai~~vl~~---~~~~~~~~~~a~~l~~ 428 (433)
+.++++++|.++++| +++.+.|++++++..+
T Consensus 367 -------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~ 400 (415)
T cd03816 367 -------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEESE 400 (415)
T ss_pred -------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Confidence 579999999999998 7678889999988764
No 53
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.65 E-value=2.7e-05 Score=75.53 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=90.2
Q ss_pred CcEEEEEeCCCCCC-CHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHH
Q 041323 256 GSVLYISFGSQNTI-SSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLE 334 (433)
Q Consensus 256 ~~vv~vs~GS~~~~-~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~ 334 (433)
++.+++..|+.... ..+.+.+++..+.+.+.++++ +|... .. ....... ....++.+.+|+++.+
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i-~G~~~------~~------~~~~~~~-~~~~~v~~~g~~~~~~ 255 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVI-VGNGL------EL------EEESYEL-EGDPRVEFLGAYPQEE 255 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEE-EcCch------hh------hHHHHhh-cCCCeEEEeCCCCHHH
Confidence 34567778887532 334444444444443566554 44331 00 0000000 1146888889997665
Q ss_pred ---hhccCCcceEEe----cCCc-hhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHH
Q 041323 335 ---ILSHKSTGAFLS----YCGW-NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVI 406 (433)
Q Consensus 335 ---il~~~~v~~~it----hgG~-~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai 406 (433)
++..+++ +|. ..|. .++.||+++|+|+|+.+. ..+...+.+. +.|..+.. . +.+++.+++
T Consensus 256 ~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~---~--d~~~l~~~i 323 (359)
T cd03823 256 IDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP---G--DAEDLAAAL 323 (359)
T ss_pred HHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC---C--CHHHHHHHH
Confidence 5777885 552 2333 589999999999998654 3355566663 67888875 2 589999999
Q ss_pred HHHhcCCchhHHHHHHHHHH
Q 041323 407 EMVMDEAGKGQEMKAKAEKI 426 (433)
Q Consensus 407 ~~vl~~~~~~~~~~~~a~~l 426 (433)
.++++|++..+.+++++++.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03823 324 ERLIDDPDLLERLRAGIEPP 343 (359)
T ss_pred HHHHhChHHHHHHHHhHHHh
Confidence 99999886666676666554
No 54
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.62 E-value=0.0002 Score=71.93 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=69.5
Q ss_pred CCeEEecccChHH---hhccCCcceEEecCCc------hhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccC
Q 041323 322 QGLLVRNWAPQLE---ILSHKSTGAFLSYCGW------NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRG 392 (433)
Q Consensus 322 ~~v~~~~~~pq~~---il~~~~v~~~ithgG~------~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~ 392 (433)
.++.+.+|+|+.+ +++.+++.++.+..+. +.+.|++++|+|+|+....+.. ... +.. +.|+.++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~-~i~--~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQ-LVE--GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHH-HHh--CCcEEeCC-
Confidence 4788889998764 6788887555555432 2468999999999987644321 111 222 57888864
Q ss_pred CCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 041323 393 VQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGR 428 (433)
Q Consensus 393 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~ 428 (433)
-+.++++++|.++++|++..+.+++++++..+
T Consensus 358 ----~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~ 389 (412)
T PRK10307 358 ----ESVEALVAAIAALARQALLRPKLGTVAREYAE 389 (412)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 26899999999999988777888888887654
No 55
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.62 E-value=3.7e-05 Score=76.77 Aligned_cols=99 Identities=11% Similarity=0.164 Sum_probs=71.2
Q ss_pred CCCeEEecccChHH---hhccCCcceEEec-CC-chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCC
Q 041323 321 KQGLLVRNWAPQLE---ILSHKSTGAFLSY-CG-WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQS 395 (433)
Q Consensus 321 ~~~v~~~~~~pq~~---il~~~~v~~~ith-gG-~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~ 395 (433)
..++.+.+++|+.+ ++..+++-++-+. .| ..++.||+++|+|+|+-. .......+.+. ..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCC----
Confidence 35788889999765 5667776333333 22 248999999999999764 33445555553 57887764
Q ss_pred cccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 041323 396 TIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQ 429 (433)
Q Consensus 396 ~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~ 429 (433)
-+.++++++|.++++|++....+.+++++..+.
T Consensus 351 -~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~ 383 (396)
T cd03818 351 -FDPDALAAAVIELLDDPARRARLRRAARRTALR 383 (396)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 368999999999999987777888888876543
No 56
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.59 E-value=4.6e-05 Score=74.90 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=67.7
Q ss_pred CCeEEecccChH-HhhccCCcceEE----ecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCc
Q 041323 322 QGLLVRNWAPQL-EILSHKSTGAFL----SYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQST 396 (433)
Q Consensus 322 ~~v~~~~~~pq~-~il~~~~v~~~i----thgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~ 396 (433)
.++.+.++.++. .++..+++ +| .-|...++.||+++|+|+|+... ...+..+.+. ..|..++.
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~----- 320 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDV----- 320 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCC-----
Confidence 467777877654 47788885 44 22334699999999999998643 3355556653 57877754
Q ss_pred ccHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 041323 397 IVGHDVKNVIEMVMDEAGKGQEMKAKAEKI 426 (433)
Q Consensus 397 ~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l 426 (433)
-+.+++.++|.+++++++....+++++++.
T Consensus 321 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 321 GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 267999999999999886677788888876
No 57
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.58 E-value=2.5e-05 Score=78.85 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=67.7
Q ss_pred HhhccCCcceEEe----cCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHH
Q 041323 334 EILSHKSTGAFLS----YCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMV 409 (433)
Q Consensus 334 ~il~~~~v~~~it----hgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~v 409 (433)
.+++.+++ +|+. -+|..++.||+++|+|+|+-|...++......+.+. |.++... +.+++.++|.++
T Consensus 315 ~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~~-------d~~~La~~l~~l 385 (425)
T PRK05749 315 LLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQVE-------DAEDLAKAVTYL 385 (425)
T ss_pred HHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEEC-------CHHHHHHHHHHH
Confidence 46777886 4552 134456999999999999999888888877777775 7766643 479999999999
Q ss_pred hcCCchhHHHHHHHHHHHHH
Q 041323 410 MDEAGKGQEMKAKAEKIGRQ 429 (433)
Q Consensus 410 l~~~~~~~~~~~~a~~l~~~ 429 (433)
++|++..+.|.+++++..+.
T Consensus 386 l~~~~~~~~m~~~a~~~~~~ 405 (425)
T PRK05749 386 LTDPDARQAYGEAGVAFLKQ 405 (425)
T ss_pred hcCHHHHHHHHHHHHHHHHh
Confidence 99987778888888877643
No 58
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.52 E-value=0.00018 Score=69.02 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=88.4
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHHh--CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhh--hcCCCeEEecccC-
Q 041323 258 VLYISFGSQNT-ISSSQTMELAIGLEA--SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIE--ETKQGLLVRNWAP- 331 (433)
Q Consensus 258 vv~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p- 331 (433)
.+++..|+... ...+.+.++++.+.+ .+.++++ +|... ..+.+.+... ....++.+.++..
T Consensus 179 ~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i-~G~~~------------~~~~~~~~~~~~~~~~~v~~~g~~~~ 245 (348)
T cd03820 179 KRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRI-VGDGP------------EREALEALIKELGLEDRVILLGFTKN 245 (348)
T ss_pred cEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEE-EeCCC------------CHHHHHHHHHHcCCCCeEEEcCCcch
Confidence 45666677653 234555555555543 2344444 44321 1122222111 1134566666633
Q ss_pred hHHhhccCCcceEEecC----CchhHHHHHhcCCceEecccccchhhHHHHHHHHhc-ceEEEccCCCCcccHHHHHHHH
Q 041323 332 QLEILSHKSTGAFLSYC----GWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMG-MAVELTRGVQSTIVGHDVKNVI 406 (433)
Q Consensus 332 q~~il~~~~v~~~ithg----G~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G-~g~~l~~~~~~~~~~~~l~~ai 406 (433)
-..++..+++ +|.-. ..+++.||+++|+|+|+.+..+.+ ..+.+. | .|..++. -+.+++.++|
T Consensus 246 ~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~-----~~~~~~~~~i 313 (348)
T cd03820 246 IEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPN-----GDVEALAEAL 313 (348)
T ss_pred HHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCC-----CCHHHHHHHH
Confidence 3357778885 55433 247899999999999987544332 233343 5 7888764 3579999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHH
Q 041323 407 EMVMDEAGKGQEMKAKAEKIGRQI 430 (433)
Q Consensus 407 ~~vl~~~~~~~~~~~~a~~l~~~~ 430 (433)
.++++|++..+.+++++++..+.+
T Consensus 314 ~~ll~~~~~~~~~~~~~~~~~~~~ 337 (348)
T cd03820 314 LRLMEDEELRKRMGANARESAERF 337 (348)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHh
Confidence 999999877777888877665543
No 59
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.49 E-value=2.1e-06 Score=85.53 Aligned_cols=144 Identities=19% Similarity=0.150 Sum_probs=92.3
Q ss_pred CcEEEEEeCCCCCCCHHHHHHHHHHHHh----CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhh--c---------
Q 041323 256 GSVLYISFGSQNTISSSQTMELAIGLEA----SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEE--T--------- 320 (433)
Q Consensus 256 ~~vv~vs~GS~~~~~~~~~~~~~~al~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------- 320 (433)
.++|.+..||....-.+.+..++++++. .+..|++.+.+.. ..+.+.....+ .
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~------------~~~~~~~~l~~~g~~~~~~~~~~ 272 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL------------SLEKLQAILEDLGWQLEGSSEDQ 272 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC------------CHHHHHHHHHhcCceecCCcccc
Confidence 4589999999864333333444444443 3678888884331 00111111110 0
Q ss_pred -----CCCeEEecccCh-HHhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHHHHHHH---hcceEEEcc
Q 041323 321 -----KQGLLVRNWAPQ-LEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEE---MGMAVELTR 391 (433)
Q Consensus 321 -----~~~v~~~~~~pq-~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~---~G~g~~l~~ 391 (433)
..++.+..|..+ .++++.++ ++|+.+|..| .|++..|+|+|++|+-.+|. |+..+++. .|.++.+..
T Consensus 273 ~~~~~~~~~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~ 348 (396)
T TIGR03492 273 TSLFQKGTLEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS 348 (396)
T ss_pred chhhccCceEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC
Confidence 123455455443 46888888 5999999777 99999999999999877776 98776651 166666653
Q ss_pred CCCCcccHHHHHHHHHHHhcCCchhHHHH
Q 041323 392 GVQSTIVGHDVKNVIEMVMDEAGKGQEMK 420 (433)
Q Consensus 392 ~~~~~~~~~~l~~ai~~vl~~~~~~~~~~ 420 (433)
.+.+.+.+++.++++|++..+++.
T Consensus 349 -----~~~~~l~~~l~~ll~d~~~~~~~~ 372 (396)
T TIGR03492 349 -----KNPEQAAQVVRQLLADPELLERCR 372 (396)
T ss_pred -----CCHHHHHHHHHHHHcCHHHHHHHH
Confidence 345999999999999874333343
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.49 E-value=0.00015 Score=70.76 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=67.1
Q ss_pred CCCeEEecccC-hH---HhhccCCcceEEec----CCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccC
Q 041323 321 KQGLLVRNWAP-QL---EILSHKSTGAFLSY----CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRG 392 (433)
Q Consensus 321 ~~~v~~~~~~p-q~---~il~~~~v~~~ith----gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~ 392 (433)
..++...+|++ +. .+++.+++ +|.- +..+++.||+++|+|+|+.... .....+.+. +.|..+..
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCC-
Confidence 45677789998 43 46777775 6653 3357999999999999976432 223344443 57777764
Q ss_pred CCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 041323 393 VQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 393 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~ 427 (433)
.+.+++.+++.+++++++....+.+++++..
T Consensus 315 ----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 345 (365)
T cd03825 315 ----GDPEDLAEGIEWLLADPDEREELGEAARELA 345 (365)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3688999999999998855666777777654
No 61
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.45 E-value=0.0002 Score=69.56 Aligned_cols=94 Identities=9% Similarity=0.018 Sum_probs=66.7
Q ss_pred CCCeEEecccChHH---hhccCCcceEEec-CC-chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCC
Q 041323 321 KQGLLVRNWAPQLE---ILSHKSTGAFLSY-CG-WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQS 395 (433)
Q Consensus 321 ~~~v~~~~~~pq~~---il~~~~v~~~ith-gG-~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~ 395 (433)
..++.+.+|+++.+ ++..+++-++-++ .| .+++.||+++|+|+|+-+.. .....+.+ +.|.....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~~---- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVDD---- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeCC----
Confidence 46788889999654 5777786222222 22 46899999999999986533 23333333 67777764
Q ss_pred cccHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 041323 396 TIVGHDVKNVIEMVMDEAGKGQEMKAKAEKI 426 (433)
Q Consensus 396 ~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l 426 (433)
+.+++.++|.+++++++..+.+.+++++.
T Consensus 331 --~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 --DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred --ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34999999999999876667788888776
No 62
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.45 E-value=7.8e-05 Score=72.43 Aligned_cols=319 Identities=17% Similarity=0.188 Sum_probs=179.4
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcC--CcEEEEEe-CCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCC
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRST--GFKITIAN-TPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPN 83 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~r--Gh~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~ 83 (433)
-.+-+-..+.|-++-.++|-++|.+ + ++.+++-+ ++...+.+..... ..+....+|++ ++..
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~-~~P~~~ilvTt~T~Tg~e~a~~~~~---------~~v~h~YlP~D-----~~~~ 114 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRE-RFPDLRILVTTMTPTGAERAAALFG---------DSVIHQYLPLD-----LPIA 114 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHH-hCCCCCEEEEecCccHHHHHHHHcC---------CCeEEEecCcC-----chHH
Confidence 3455566688999999999999999 8 88888777 6666666666533 34666667743 2211
Q ss_pred CC------CCccEEEEcCCc-ccHHHHHHHhCCceEEEecchHHHHHHHhhhhccCCCCCCCCCcccCCCCCCCcccccc
Q 041323 84 TE------NRELVFGSSTFF-GWAVDVAKSAGTTNVTFITGGAYGTLAYTSMWFNLPHRKTNSDEFTLPGFPERCHFHIT 156 (433)
Q Consensus 84 ~~------~~~~~vv~d~~~-~~a~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 156 (433)
.. ..+.+|+.+.-. +....-+++.|||.+.+..=-. + .++++ +.
T Consensus 115 v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS--------------------~-rS~~~--------y~ 165 (419)
T COG1519 115 VRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLS--------------------D-RSFAR--------YA 165 (419)
T ss_pred HHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec--------------------h-hhhHH--------HH
Confidence 11 112267766544 4666678889999998622100 0 00000 11
Q ss_pred chhhhhhhcCCCChHHHhHHHHhhhhcccceeEecchhccchhhhhcccccCCCCeeEeCccCCcccccccccccccCCC
Q 041323 157 QLHKYWRMADGSDDWSKFMQPNITQSFQSYEMLCKTAEDIEPGALQWPRNYTKLPVWTIGPLLPQSYLKKSFFNLQQHSG 236 (433)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~ 236 (433)
.+..+. .. .+..-++++..+-.+-+ -+...-.+++..+|.+=.....
T Consensus 166 k~~~~~-------------~~---~~~~i~li~aQse~D~~-----Rf~~LGa~~v~v~GNlKfd~~~------------ 212 (419)
T COG1519 166 KLKFLA-------------RL---LFKNIDLILAQSEEDAQ-----RFRSLGAKPVVVTGNLKFDIEP------------ 212 (419)
T ss_pred HHHHHH-------------HH---HHHhcceeeecCHHHHH-----HHHhcCCcceEEecceeecCCC------------
Confidence 111111 11 11222334443322111 0111111346667765322210
Q ss_pred CCCCCCchh---HHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhC--CCeEEEEEcCCCCCCCCccccccCCch
Q 041323 237 KNPGVNPEK---IIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEAS--AKSFLWVIRPPVGFDLRGEFRSERLPE 311 (433)
Q Consensus 237 ~~~~~~~~~---l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~ 311 (433)
...+..+ +...++.. ++ +.|..+|. ....+.+.+...+|.+. +..+||+-+.. +..+
T Consensus 213 --~~~~~~~~~~~r~~l~~~--r~-v~iaaSTH-~GEeei~l~~~~~l~~~~~~~llIlVPRHp-----------ERf~- 274 (419)
T COG1519 213 --PPQLAAELAALRRQLGGH--RP-VWVAASTH-EGEEEIILDAHQALKKQFPNLLLILVPRHP-----------ERFK- 274 (419)
T ss_pred --ChhhHHHHHHHHHhcCCC--Cc-eEEEecCC-CchHHHHHHHHHHHHhhCCCceEEEecCCh-----------hhHH-
Confidence 0112222 33333332 22 55555553 22345566677777663 35566654432 1111
Q ss_pred hHHHHhh---------------hcCCCeEEecccChHH-hhccCCcceE-----EecCCchhHHHHHhcCCceEeccccc
Q 041323 312 GFEERIE---------------ETKQGLLVRNWAPQLE-ILSHKSTGAF-----LSYCGWNSALESLSQGLPMIGWPIAA 370 (433)
Q Consensus 312 ~~~~~~~---------------~~~~~v~~~~~~pq~~-il~~~~v~~~-----ithgG~~s~~eal~~GvP~i~~P~~~ 370 (433)
.+.+..+ ....++++.+-+-.+. ++.-+++ +| +-+||.| ..|++++|+|+|.-|+..
T Consensus 275 ~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adi-AFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~ 352 (419)
T COG1519 275 AVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADI-AFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTF 352 (419)
T ss_pred HHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccE-EEECCcccCCCCCC-hhhHHHcCCCEEeCCccc
Confidence 1111111 0022455555555444 3334444 44 4578876 569999999999999999
Q ss_pred chhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 041323 371 EQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQI 430 (433)
Q Consensus 371 dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~ 430 (433)
-|.+-++++.++ |.|+.++. ++.+.+++..+++|+++++.|.+++.++-+..
T Consensus 353 Nf~ei~~~l~~~-ga~~~v~~-------~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~ 404 (419)
T COG1519 353 NFSDIAERLLQA-GAGLQVED-------ADLLAKAVELLLADEDKREAYGRAGLEFLAQN 404 (419)
T ss_pred cHHHHHHHHHhc-CCeEEECC-------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 999999999997 99999973 78899999999988878888888877765544
No 63
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.44 E-value=0.00016 Score=69.80 Aligned_cols=92 Identities=11% Similarity=0.143 Sum_probs=68.4
Q ss_pred CCCeEEecccChHH---hhccCCcceEEe----cCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCC
Q 041323 321 KQGLLVRNWAPQLE---ILSHKSTGAFLS----YCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGV 393 (433)
Q Consensus 321 ~~~v~~~~~~pq~~---il~~~~v~~~it----hgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~ 393 (433)
..++.+.+++++.+ ++..+++ +|. -|..+++.||+++|+|+|+.+. ......+.+. +.|..+..
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~-- 325 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP-- 325 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC--
Confidence 56888889997554 6777775 442 2456799999999999998765 3455566654 78888865
Q ss_pred CCcccHHHHHHHHHHHhcCCchhHHHHHHHH
Q 041323 394 QSTIVGHDVKNVIEMVMDEAGKGQEMKAKAE 424 (433)
Q Consensus 394 ~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~ 424 (433)
.+.+++.++|.+++++++..+.+.++++
T Consensus 326 ---~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 353 (374)
T cd03801 326 ---GDPEALAEAILRLLDDPELRRRLGEAAR 353 (374)
T ss_pred ---CCHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 3589999999999998865566666665
No 64
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.44 E-value=0.00027 Score=70.13 Aligned_cols=94 Identities=13% Similarity=0.101 Sum_probs=68.1
Q ss_pred CCCeEEecccChHH---hhccCCcceEEec---CC-chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCC
Q 041323 321 KQGLLVRNWAPQLE---ILSHKSTGAFLSY---CG-WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGV 393 (433)
Q Consensus 321 ~~~v~~~~~~pq~~---il~~~~v~~~ith---gG-~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~ 393 (433)
..++.+.+++|+.+ ++..+++ ++.. -| ..++.||+++|+|+|+.-.. .....+.+. +.|..+..
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeCC--
Confidence 46788999999764 6777775 4421 12 35789999999999986432 233445553 67777643
Q ss_pred CCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 041323 394 QSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 394 ~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~ 427 (433)
+.++++++|.+++++++..+.+++++++..
T Consensus 350 ----~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~ 379 (392)
T cd03805 350 ----TPEEFAEAMLKLANDPDLADRMGAAGRKRV 379 (392)
T ss_pred ----CHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 689999999999998867778888887754
No 65
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.36 E-value=0.00036 Score=69.74 Aligned_cols=95 Identities=11% Similarity=0.048 Sum_probs=69.2
Q ss_pred CCeEEecccChH---HhhccCCcceEEe---cCC-chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCC
Q 041323 322 QGLLVRNWAPQL---EILSHKSTGAFLS---YCG-WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQ 394 (433)
Q Consensus 322 ~~v~~~~~~pq~---~il~~~~v~~~it---hgG-~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~ 394 (433)
.++.+.+++++. .+++.+++ +|. +-| ..++.||+++|+|+|+.... .....+.+. +.|..++.
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~--- 352 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDG--- 352 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCC---
Confidence 578888999865 46888885 442 223 35899999999999986543 334455553 67887764
Q ss_pred CcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 041323 395 STIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGR 428 (433)
Q Consensus 395 ~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~ 428 (433)
-+.++++++|.+++++++..+.+++++++..+
T Consensus 353 --~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~ 384 (405)
T TIGR03449 353 --HDPADWADALARLLDDPRTRIRMGAAAVEHAA 384 (405)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 36899999999999987666778777776543
No 66
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.34 E-value=0.00058 Score=66.54 Aligned_cols=155 Identities=11% Similarity=0.042 Sum_probs=92.2
Q ss_pred CcEEEEEeCCCCCC-CHHHHHHHHHHHHhC--CCeEEEEEcCCCCCCCCccccccCCchhHHHHhhh--cCCCeEEeccc
Q 041323 256 GSVLYISFGSQNTI-SSSQTMELAIGLEAS--AKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEE--TKQGLLVRNWA 330 (433)
Q Consensus 256 ~~vv~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~ 330 (433)
+..+++..|..... ..+.+.+++..+.+. +.+++ .+|... ....+.+.+.+.+.. ...++.+.+|.
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~-ivG~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 254 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLL-IVGDAQ--------GRRFYYAELLELIKRLGLQDRVTFVGHC 254 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEE-EEECCc--------ccchHHHHHHHHHHHcCCcceEEEcCCc
Confidence 34567777876532 345566666666653 34433 344321 001111111112221 13568888885
Q ss_pred ChH-HhhccCCcceEEec--CC-chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHH
Q 041323 331 PQL-EILSHKSTGAFLSY--CG-WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVI 406 (433)
Q Consensus 331 pq~-~il~~~~v~~~ith--gG-~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai 406 (433)
+.. .++..+++-++-++ -| .+++.||+++|+|+|+.-. ......+.+. +.|..+.. -+.+++.++|
T Consensus 255 ~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~-----~~~~~l~~~i 324 (355)
T cd03819 255 SDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPP-----GDAEALAQAL 324 (355)
T ss_pred ccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCC-----CCHHHHHHHH
Confidence 433 47888887333331 23 3699999999999997643 2344455553 57888864 3789999999
Q ss_pred HHHh-cCCchhHHHHHHHHHHHHH
Q 041323 407 EMVM-DEAGKGQEMKAKAEKIGRQ 429 (433)
Q Consensus 407 ~~vl-~~~~~~~~~~~~a~~l~~~ 429 (433)
.+++ .++++..+++++|++..+.
T Consensus 325 ~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 325 DQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHH
Confidence 6555 4666777888888887654
No 67
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.28 E-value=6e-06 Score=68.07 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=75.6
Q ss_pred EEEEEeCCCCCCC---HHHHHHHHHHHHhCC-CeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCC--eEEecccC
Q 041323 258 VLYISFGSQNTIS---SSQTMELAIGLEASA-KSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQG--LLVRNWAP 331 (433)
Q Consensus 258 vv~vs~GS~~~~~---~~~~~~~~~al~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~p 331 (433)
.+||+-||..-.. --.-.+..+.|.+.| .+.+..+|.+. ...++......+ ..+ +...+|-|
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~----------~~~~d~~~~~~k--~~gl~id~y~f~p 72 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ----------PFFGDPIDLIRK--NGGLTIDGYDFSP 72 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCc----------cCCCCHHHhhcc--cCCeEEEEEecCc
Confidence 6999999986211 111334667778887 47788888651 011222211111 223 34456777
Q ss_pred h-HHhhccCCcceEEecCCchhHHHHHhcCCceEeccc----ccchhhHHHHHHHHhcce
Q 041323 332 Q-LEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPI----AAEQTYNSKMLVEEMGMA 386 (433)
Q Consensus 332 q-~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~----~~dQ~~na~~~~~~~G~g 386 (433)
. .+....++ ++|+|+|+||++|.|..|+|.|+++- -.+|..-|..+++. |-=
T Consensus 73 sl~e~I~~Ad--lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL 129 (170)
T KOG3349|consen 73 SLTEDIRSAD--LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYL 129 (170)
T ss_pred cHHHHHhhcc--EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcE
Confidence 6 34555566 69999999999999999999999984 36899999999884 653
No 68
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.25 E-value=0.00061 Score=66.26 Aligned_cols=98 Identities=14% Similarity=0.229 Sum_probs=68.1
Q ss_pred CCCeEEec-ccChH---HhhccCCcceEEec----CCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccC
Q 041323 321 KQGLLVRN-WAPQL---EILSHKSTGAFLSY----CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRG 392 (433)
Q Consensus 321 ~~~v~~~~-~~pq~---~il~~~~v~~~ith----gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~ 392 (433)
..++...+ |+|+. .++..+++-++-++ +-.+++.||+++|+|+|+-+..+ ...+.+. +.|..+..
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~~- 318 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVPP- 318 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEcC-
Confidence 35666664 48864 46677775222222 33468999999999999877544 2334554 77887765
Q ss_pred CCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 041323 393 VQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQ 429 (433)
Q Consensus 393 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~ 429 (433)
-+.+++.++|.+++++++...++++++++..+.
T Consensus 319 ----~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 351 (366)
T cd03822 319 ----GDPAALAEAIRRLLADPELAQALRARAREYARA 351 (366)
T ss_pred ----CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh
Confidence 258999999999999876677788888776543
No 69
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.23 E-value=0.00059 Score=65.43 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=82.0
Q ss_pred CcEEEEEeCCCCCC-CHHHHHHHHHHHHhC--CCeEEEEEcCCCCCCCCccccccCCchhHHHHhh--hcCCCeEEeccc
Q 041323 256 GSVLYISFGSQNTI-SSSQTMELAIGLEAS--AKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIE--ETKQGLLVRNWA 330 (433)
Q Consensus 256 ~~vv~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~ 330 (433)
+..+++..|+.... ..+.+.++++.+.+. +.++++ +|... ..+.+.+.+. ....++.+.++.
T Consensus 188 ~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i-~G~~~------------~~~~~~~~~~~~~~~~~v~~~g~~ 254 (353)
T cd03811 188 DGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVI-LGDGP------------LREELEALAKELGLADRVHFLGFQ 254 (353)
T ss_pred CceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEE-EcCCc------------cHHHHHHHHHhcCCCccEEEeccc
Confidence 34677778887632 234444445544443 455444 34321 1112221111 113567777887
Q ss_pred ChH-HhhccCCcceEEec--CCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHH---HH
Q 041323 331 PQL-EILSHKSTGAFLSY--CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDV---KN 404 (433)
Q Consensus 331 pq~-~il~~~~v~~~ith--gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l---~~ 404 (433)
+.. .++..+++-++-++ |..+++.||+++|+|+|+-... .....+.+. +.|...+. -+.+.+ .+
T Consensus 255 ~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-----~~~~~~~~~~~ 324 (353)
T cd03811 255 SNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV-----GDEAALAAAAL 324 (353)
T ss_pred CCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC-----CCHHHHHHHHH
Confidence 654 57888885222222 3356899999999999985433 455667764 78888865 245666 56
Q ss_pred HHHHHhcCCchhHHHHH
Q 041323 405 VIEMVMDEAGKGQEMKA 421 (433)
Q Consensus 405 ai~~vl~~~~~~~~~~~ 421 (433)
++.+++.++.....+++
T Consensus 325 ~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 325 ALLDLLLDPELRERLAA 341 (353)
T ss_pred HHHhccCChHHHHHHHH
Confidence 66677777744555555
No 70
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.20 E-value=0.001 Score=65.91 Aligned_cols=95 Identities=15% Similarity=0.238 Sum_probs=64.9
Q ss_pred CeEE-ecccChHH---hhccCCcceEEe--c--CCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCC
Q 041323 323 GLLV-RNWAPQLE---ILSHKSTGAFLS--Y--CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQ 394 (433)
Q Consensus 323 ~v~~-~~~~pq~~---il~~~~v~~~it--h--gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~ 394 (433)
++.. .+++++.+ ++..+++ +|. + +...++.||+++|+|+|+-.. ......+++. +.|..++.
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~--- 330 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPP--- 330 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCC---
Confidence 3443 46777543 5777885 543 1 224578999999999998654 3355556664 67888875
Q ss_pred Ccc----cHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 041323 395 STI----VGHDVKNVIEMVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 395 ~~~----~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~ 427 (433)
++. ..+++.++|.++++|++..+.+.+++++..
T Consensus 331 ~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 367 (388)
T TIGR02149 331 DNSDADGFQAELAKAINILLADPELAKKMGIAGRKRA 367 (388)
T ss_pred CCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 222 238999999999998866677877777643
No 71
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.09 E-value=0.0016 Score=65.06 Aligned_cols=131 Identities=11% Similarity=0.065 Sum_probs=75.3
Q ss_pred CcEEEEEeCCCCC-CCHHHHHHHHHHHHh--CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhh--cCCCeEEeccc
Q 041323 256 GSVLYISFGSQNT-ISSSQTMELAIGLEA--SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEE--TKQGLLVRNWA 330 (433)
Q Consensus 256 ~~vv~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~ 330 (433)
+..+++..|.... -+.+.+.+.+..+.+ .+.++++ +|... ..+.+.+.++. ...++.+.+|+
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i-~G~g~------------~~~~l~~~~~~~~l~~~v~~~G~~ 258 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFII-GGDGP------------KRILLEEMREKYNLQDRVELLGAV 258 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEE-EeCCc------------hHHHHHHHHHHhCCCCeEEEeCCC
Confidence 3457777787753 223444444444433 3455444 44321 11223222221 13468888999
Q ss_pred ChHH---hhccCCcceEEe---cCCc-hhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHH
Q 041323 331 PQLE---ILSHKSTGAFLS---YCGW-NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVK 403 (433)
Q Consensus 331 pq~~---il~~~~v~~~it---hgG~-~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~ 403 (433)
|+.+ +++.+++ +|. +-|. .++.||+++|+|+|+-+..+ ....+.+ |.+.... . +.+++.
T Consensus 259 ~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~----~--~~~~l~ 324 (398)
T cd03796 259 PHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE----P--DVESIV 324 (398)
T ss_pred CHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC----C--CHHHHH
Confidence 8654 6677775 443 2233 49999999999999876543 2233333 4443332 2 679999
Q ss_pred HHHHHHhcCC
Q 041323 404 NVIEMVMDEA 413 (433)
Q Consensus 404 ~ai~~vl~~~ 413 (433)
+++.+++++.
T Consensus 325 ~~l~~~l~~~ 334 (398)
T cd03796 325 RKLEEAISIL 334 (398)
T ss_pred HHHHHHHhCh
Confidence 9999999865
No 72
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.03 E-value=0.0038 Score=63.27 Aligned_cols=95 Identities=11% Similarity=0.072 Sum_probs=66.4
Q ss_pred CCeEEecccChHHh---hccC--CcceEEecC---C-chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccC
Q 041323 322 QGLLVRNWAPQLEI---LSHK--STGAFLSYC---G-WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRG 392 (433)
Q Consensus 322 ~~v~~~~~~pq~~i---l~~~--~v~~~ithg---G-~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~ 392 (433)
.++.+.+++++.++ +..+ +.++||.-. | ..++.||+++|+|+|+-... .....+.+. ..|..+..
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv~~- 390 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLVDV- 390 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEeCC-
Confidence 45777777776654 5444 123577543 3 35999999999999977543 244445553 57888865
Q ss_pred CCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 041323 393 VQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKI 426 (433)
Q Consensus 393 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l 426 (433)
-+.++++++|.++++|++..+.|.+++++.
T Consensus 391 ----~d~~~la~~i~~ll~~~~~~~~~~~~a~~~ 420 (439)
T TIGR02472 391 ----LDLEAIASALEDALSDSSQWQLWSRNGIEG 420 (439)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 368999999999999986677787777653
No 73
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.01 E-value=0.0069 Score=58.43 Aligned_cols=136 Identities=11% Similarity=0.039 Sum_probs=81.8
Q ss_pred cEEEEEeCCCCC-CCHHHHHHHHHHHHhCCCeEEEE-EcCCCCCCCCccccccCCchhHHHHhh--hcCCCeEEecccCh
Q 041323 257 SVLYISFGSQNT-ISSSQTMELAIGLEASAKSFLWV-IRPPVGFDLRGEFRSERLPEGFEERIE--ETKQGLLVRNWAPQ 332 (433)
Q Consensus 257 ~vv~vs~GS~~~-~~~~~~~~~~~al~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~pq 332 (433)
..+++..|+... ...+.+.++++.+.+.+..+.+. +|... ..+.+.+.++ ....++.+.+++++
T Consensus 202 ~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~------------~~~~~~~~~~~~~~~~~v~~~g~~~~ 269 (377)
T cd03798 202 KKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGP------------LREALEALAAELGLEDRVTFLGAVPH 269 (377)
T ss_pred ceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCc------------chHHHHHHHHhcCCcceEEEeCCCCH
Confidence 356777787764 23344555555554432233333 33221 1112222211 12468888899997
Q ss_pred HH---hhccCCcceEE--ecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHH
Q 041323 333 LE---ILSHKSTGAFL--SYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIE 407 (433)
Q Consensus 333 ~~---il~~~~v~~~i--thgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~ 407 (433)
.+ ++..+++-++. +-|..+++.||+++|+|+|+-+.. .....+.+. +.|..... -+.+++.++|.
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~-----~~~~~l~~~i~ 339 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPP-----GDPEALAEAIL 339 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECC-----CCHHHHHHHHH
Confidence 54 56777752222 224567899999999999986543 344556663 66777764 37899999999
Q ss_pred HHhcCCc
Q 041323 408 MVMDEAG 414 (433)
Q Consensus 408 ~vl~~~~ 414 (433)
++++++.
T Consensus 340 ~~~~~~~ 346 (377)
T cd03798 340 RLLADPW 346 (377)
T ss_pred HHhcCcH
Confidence 9999873
No 74
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.98 E-value=0.0096 Score=57.37 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=61.5
Q ss_pred CCeEEecccCh-HHhhccCCcceEEecCC----chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCc
Q 041323 322 QGLLVRNWAPQ-LEILSHKSTGAFLSYCG----WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQST 396 (433)
Q Consensus 322 ~~v~~~~~~pq-~~il~~~~v~~~ithgG----~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~ 396 (433)
.++.+.+...+ ..+++.+++ +|.... .+++.||+++|+|+|+... ..+...+.+ .|..+..
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC-----
Confidence 45555554443 357788885 665433 4799999999999998543 333444443 4555653
Q ss_pred ccHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 041323 397 IVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGR 428 (433)
Q Consensus 397 ~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~ 428 (433)
-+.+++.++|.+++++++....+.+++++..+
T Consensus 317 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 348 (365)
T cd03807 317 GDPEALAEAIEALLADPALRQALGEAARERIE 348 (365)
T ss_pred CCHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 25899999999999987555566666665543
No 75
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.97 E-value=0.0023 Score=62.40 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=58.6
Q ss_pred CCCeEEecccChHH---hhccCCcceEEecC----Cc-hhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccC
Q 041323 321 KQGLLVRNWAPQLE---ILSHKSTGAFLSYC----GW-NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRG 392 (433)
Q Consensus 321 ~~~v~~~~~~pq~~---il~~~~v~~~ithg----G~-~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~ 392 (433)
..++.+.+++++.+ .+..+++ ++.+. |. +++.||+++|+|+|+....+. ...+.+ .|.....
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~---~g~~~~~- 316 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGD---KAIYFKV- 316 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecC---CeeEecC-
Confidence 46888999999875 4555664 44433 22 579999999999998654321 111221 2333332
Q ss_pred CCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 041323 393 VQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 393 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~ 427 (433)
. +.++++|.+++++++....+.+++++..
T Consensus 317 --~----~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 345 (363)
T cd04955 317 --G----DDLASLLEELEADPEEVSAMAKAARERI 345 (363)
T ss_pred --c----hHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 1 1299999999998766666777776653
No 76
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.97 E-value=0.002 Score=62.65 Aligned_cols=129 Identities=10% Similarity=0.073 Sum_probs=73.9
Q ss_pred cEEEEEeCCCCC-CCHHHHHHHHHHHHh--CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhh--cCCCeEEecccC
Q 041323 257 SVLYISFGSQNT-ISSSQTMELAIGLEA--SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEE--TKQGLLVRNWAP 331 (433)
Q Consensus 257 ~vv~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p 331 (433)
..+++..|+... ...+.+.+.+..+.+ .+.+++++ |.+. ..+.+.+.... ...++.+.++..
T Consensus 188 ~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~-G~g~------------~~~~~~~~~~~~~~~~~v~~~g~~~ 254 (360)
T cd04951 188 TFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIA-GDGP------------LRATLERLIKALGLSNRVKLLGLRD 254 (360)
T ss_pred CEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEE-cCCC------------cHHHHHHHHHhcCCCCcEEEecccc
Confidence 357777787653 223344444433333 24666654 3221 11223332221 135677777765
Q ss_pred h-HHhhccCCcceEEecC----CchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHH
Q 041323 332 Q-LEILSHKSTGAFLSYC----GWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVI 406 (433)
Q Consensus 332 q-~~il~~~~v~~~ithg----G~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai 406 (433)
+ ..++..+++ +|.-. ..+++.||+++|+|+|+- |...+...+.+. |. .+.. -+.+++.++|
T Consensus 255 ~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~--~~~~-----~~~~~~~~~i 320 (360)
T cd04951 255 DIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GL--IVPI-----SDPEALANKI 320 (360)
T ss_pred cHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ce--EeCC-----CCHHHHHHHH
Confidence 5 357888886 44322 257899999999999974 344444455542 44 4433 2688999999
Q ss_pred HHHhcC
Q 041323 407 EMVMDE 412 (433)
Q Consensus 407 ~~vl~~ 412 (433)
.+++++
T Consensus 321 ~~ll~~ 326 (360)
T cd04951 321 DEILKM 326 (360)
T ss_pred HHHHhC
Confidence 999843
No 77
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=97.94 E-value=0.0045 Score=67.75 Aligned_cols=97 Identities=11% Similarity=0.073 Sum_probs=66.8
Q ss_pred CCeEEecccChHH---hhccCC--cceEEec---CC-chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccC
Q 041323 322 QGLLVRNWAPQLE---ILSHKS--TGAFLSY---CG-WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRG 392 (433)
Q Consensus 322 ~~v~~~~~~pq~~---il~~~~--v~~~ith---gG-~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~ 392 (433)
..|.+.+|+++.+ ++..++ .++||.= =| ..++.||+++|+|+|+-...+ ....+... ..|+.++.
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP- 621 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDP- 621 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECC-
Confidence 4577778887765 344442 1246653 23 469999999999999875432 22334442 56888865
Q ss_pred CCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 041323 393 VQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGR 428 (433)
Q Consensus 393 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~ 428 (433)
-+.++|+++|.++++|++..+.|.+++++..+
T Consensus 622 ----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~ 653 (1050)
T TIGR02468 622 ----HDQQAIADALLKLVADKQLWAECRQNGLKNIH 653 (1050)
T ss_pred ----CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 36889999999999998667788888776654
No 78
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.89 E-value=0.0075 Score=58.69 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=81.6
Q ss_pred cEEEEEeCCCCC-CCHHHHHHHHHHHHhC--CCeEEEEEcCCCCCCCCccccccCCchhHHHHhh--hcCCCeEEecccC
Q 041323 257 SVLYISFGSQNT-ISSSQTMELAIGLEAS--AKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIE--ETKQGLLVRNWAP 331 (433)
Q Consensus 257 ~vv~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p 331 (433)
..+++..|+... ...+.+.+.+..+.+. +.++++ +|... ..+.+....+ ....++...++..
T Consensus 192 ~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~i-vG~g~------------~~~~~~~~~~~~~~~~~v~~~g~~~ 258 (358)
T cd03812 192 KFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLL-VGDGE------------LEEEIKKKVKELGLEDKVIFLGVRN 258 (358)
T ss_pred CEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEE-EeCCc------------hHHHHHHHHHhcCCCCcEEEecccC
Confidence 356667787753 2345555555555443 445444 34321 1122222221 1135677777754
Q ss_pred h-HHhhccCCcceEEe--c--CCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHH
Q 041323 332 Q-LEILSHKSTGAFLS--Y--CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVI 406 (433)
Q Consensus 332 q-~~il~~~~v~~~it--h--gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai 406 (433)
+ .+++..+++ +|. + |-.+++.||+++|+|+|+-...+ ....+.+ +.|..... -+.++++++|
T Consensus 259 ~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~-----~~~~~~a~~i 325 (358)
T cd03812 259 DVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD-----ESPEIWAEEI 325 (358)
T ss_pred CHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC-----CCHHHHHHHH
Confidence 4 357888886 442 2 34579999999999999765433 2333443 55555543 2579999999
Q ss_pred HHHhcCCchhHHHHHHH
Q 041323 407 EMVMDEAGKGQEMKAKA 423 (433)
Q Consensus 407 ~~vl~~~~~~~~~~~~a 423 (433)
.++++|++..+.++.++
T Consensus 326 ~~l~~~~~~~~~~~~~~ 342 (358)
T cd03812 326 LKLKSEDRRERSSESIK 342 (358)
T ss_pred HHHHhCcchhhhhhhhh
Confidence 99999985544444433
No 79
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.82 E-value=0.00043 Score=69.42 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=71.8
Q ss_pred CCCeEEecccChHH---hhccCCcceEEecCC----chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCC
Q 041323 321 KQGLLVRNWAPQLE---ILSHKSTGAFLSYCG----WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGV 393 (433)
Q Consensus 321 ~~~v~~~~~~pq~~---il~~~~v~~~ithgG----~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~ 393 (433)
..++...+|+++.+ ++..+++.+||...- -++++||+++|+|+|+-... .....+.+. +.|..+..
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i~~~-~~G~l~~~-- 360 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIVDNG-GNGLLLSK-- 360 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHhcCC-CcEEEeCC--
Confidence 34688889999775 444444446765543 46899999999999975432 344555552 48888864
Q ss_pred CCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 041323 394 QSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGR 428 (433)
Q Consensus 394 ~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~ 428 (433)
.-+.++++++|.++++|++..+.|+++|++.-+
T Consensus 361 --~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~ 393 (407)
T cd04946 361 --DPTPNELVSSLSKFIDNEEEYQTMREKAREKWE 393 (407)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 346899999999999988777888888887654
No 80
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=97.82 E-value=0.00027 Score=69.53 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=83.9
Q ss_pred CcEEEEEeCCCCCC-CHHHHHHHHHHHHhCCC-eEEEEEcCCCCCCCCccccccCCchhHHHHhhhc---CCCeEEeccc
Q 041323 256 GSVLYISFGSQNTI-SSSQTMELAIGLEASAK-SFLWVIRPPVGFDLRGEFRSERLPEGFEERIEET---KQGLLVRNWA 330 (433)
Q Consensus 256 ~~vv~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~ 330 (433)
.+.|++++|..... ..+.+..+++++++... ++.++..... . ..+.+.+...+. ..++.+.+..
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~-------~----~~~~l~~~~~~~~~~~~~v~~~~~~ 266 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP-------R----TRPRIREAGLEFLGHHPNVLLISPL 266 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC-------C----hHHHHHHHHHhhccCCCCEEEECCc
Confidence 45788888877643 34567778888776432 2444333220 0 112233222211 3577776665
Q ss_pred ChH---HhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHH
Q 041323 331 PQL---EILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIE 407 (433)
Q Consensus 331 pq~---~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~ 407 (433)
++. .++..++ +||+..| |.+.||+++|+|+|+++.. |. +..+.+. |+++.+.. +.+++.++|.
T Consensus 267 ~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~~------~~~~i~~~i~ 332 (363)
T cd03786 267 GYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVGT------DPEAILAAIE 332 (363)
T ss_pred CHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecCC------CHHHHHHHHH
Confidence 544 3466677 5999999 7788999999999998743 22 3345554 77766642 4799999999
Q ss_pred HHhcCC
Q 041323 408 MVMDEA 413 (433)
Q Consensus 408 ~vl~~~ 413 (433)
++++++
T Consensus 333 ~ll~~~ 338 (363)
T cd03786 333 KLLSDE 338 (363)
T ss_pred HHhcCc
Confidence 999887
No 81
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.78 E-value=0.0083 Score=59.16 Aligned_cols=94 Identities=12% Similarity=0.114 Sum_probs=64.5
Q ss_pred CCeEEecccC-hHHhhccCCcceEE--ec--CCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCc
Q 041323 322 QGLLVRNWAP-QLEILSHKSTGAFL--SY--CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQST 396 (433)
Q Consensus 322 ~~v~~~~~~p-q~~il~~~~v~~~i--th--gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~ 396 (433)
.++.+.++.. -..++..+++ +| ++ |-.+++.||+++|+|+|+-... .+...+.+. ..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCC-----
Confidence 3455545443 3357888886 44 33 3356999999999999986643 244455553 56877764
Q ss_pred ccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 041323 397 IVGHDVKNVIEMVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 397 ~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~ 427 (433)
-+.++++++|.+++++++....+.+++++..
T Consensus 323 ~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~ 353 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAARRAHGAAGRARA 353 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3678999999999988766666777776654
No 82
>PLN02275 transferase, transferring glycosyl groups
Probab=97.71 E-value=0.063 Score=53.10 Aligned_cols=75 Identities=9% Similarity=0.175 Sum_probs=51.9
Q ss_pred CCeEEec-ccChHHh---hccCCcceEEe-c-----CC-chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEc
Q 041323 322 QGLLVRN-WAPQLEI---LSHKSTGAFLS-Y-----CG-WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELT 390 (433)
Q Consensus 322 ~~v~~~~-~~pq~~i---l~~~~v~~~it-h-----gG-~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~ 390 (433)
.|+.+.. |+|+.++ |+.+++ ||. + -| -+++.||+++|+|+|+... ..+...+++. +.|..+.
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 4566544 7887654 788886 552 1 12 3579999999999998643 2355566664 6898874
Q ss_pred cCCCCcccHHHHHHHHHHHh
Q 041323 391 RGVQSTIVGHDVKNVIEMVM 410 (433)
Q Consensus 391 ~~~~~~~~~~~l~~ai~~vl 410 (433)
+.++++++|.+++
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 3788999988764
No 83
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=97.71 E-value=0.0058 Score=58.87 Aligned_cols=128 Identities=10% Similarity=0.061 Sum_probs=76.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhh---cCCCeEEecccChHH-
Q 041323 259 LYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEE---TKQGLLVRNWAPQLE- 334 (433)
Q Consensus 259 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~pq~~- 334 (433)
+.+..|.... .+....+++++++.+.++++ +|... ..+........ ...++.+.+++++.+
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i-~G~~~------------~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~ 237 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKL-AGPVS------------DPDYFYREIAPELLDGPDIEYLGEVGGAEK 237 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEE-EeCCC------------CHHHHHHHHHHhcccCCcEEEeCCCCHHHH
Confidence 4445566642 23345577777778877665 44321 11111111111 146888999999764
Q ss_pred --hhccCCcceEEe--cCCc-hhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHH
Q 041323 335 --ILSHKSTGAFLS--YCGW-NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMV 409 (433)
Q Consensus 335 --il~~~~v~~~it--hgG~-~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~v 409 (433)
+++.+++-++-+ +-|. .++.||+++|+|+|+-... .....+.+. ..|..+. . .+++.++|.++
T Consensus 238 ~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~----~---~~~l~~~l~~l 305 (335)
T cd03802 238 AELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVD----S---VEELAAAVARA 305 (335)
T ss_pred HHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeC----C---HHHHHHHHHHH
Confidence 577788622223 2343 5899999999999977543 233344442 3677664 2 89999999988
Q ss_pred hcCC
Q 041323 410 MDEA 413 (433)
Q Consensus 410 l~~~ 413 (433)
+...
T Consensus 306 ~~~~ 309 (335)
T cd03802 306 DRLD 309 (335)
T ss_pred hccH
Confidence 7544
No 84
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.71 E-value=0.00063 Score=66.69 Aligned_cols=95 Identities=11% Similarity=0.063 Sum_probs=70.4
Q ss_pred CCCeEEecccChHH---hhccCCcceEEec----------CCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceE
Q 041323 321 KQGLLVRNWAPQLE---ILSHKSTGAFLSY----------CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAV 387 (433)
Q Consensus 321 ~~~v~~~~~~pq~~---il~~~~v~~~ith----------gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~ 387 (433)
..++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+.. .+...+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 46788889998754 5777885 4431 2357999999999999987653 355666664 7888
Q ss_pred EEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 041323 388 ELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 388 ~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~ 427 (433)
.++. -+.+++.++|.++++|++..+.+++++++..
T Consensus 317 ~~~~-----~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 351 (367)
T cd05844 317 LVPE-----GDVAALAAALGRLLADPDLRARMGAAGRRRV 351 (367)
T ss_pred EECC-----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 8864 3679999999999998866667777776654
No 85
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.69 E-value=0.029 Score=56.75 Aligned_cols=74 Identities=11% Similarity=0.063 Sum_probs=50.5
Q ss_pred EEecccChHHhhccCCcceEEecC----CchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHH
Q 041323 325 LVRNWAPQLEILSHKSTGAFLSYC----GWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGH 400 (433)
Q Consensus 325 ~~~~~~pq~~il~~~~v~~~ithg----G~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~ 400 (433)
+..++.+..+++...++ ||.=+ =.+++.||+++|+|+|+.-... | ..+.+. +-|.... +.+
T Consensus 287 vf~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~~-------~~~ 351 (462)
T PLN02846 287 VYPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTYD-------DGK 351 (462)
T ss_pred EECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEecC-------CHH
Confidence 34566666678888874 77553 3478999999999999875432 2 334332 4454442 478
Q ss_pred HHHHHHHHHhcCC
Q 041323 401 DVKNVIEMVMDEA 413 (433)
Q Consensus 401 ~l~~ai~~vl~~~ 413 (433)
++.++|.++|.++
T Consensus 352 ~~a~ai~~~l~~~ 364 (462)
T PLN02846 352 GFVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHHccC
Confidence 9999999999754
No 86
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.68 E-value=0.0011 Score=57.60 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=68.7
Q ss_pred CCCeEEecccChH---HhhccCCcceEEec----CCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCC
Q 041323 321 KQGLLVRNWAPQL---EILSHKSTGAFLSY----CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGV 393 (433)
Q Consensus 321 ~~~v~~~~~~pq~---~il~~~~v~~~ith----gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~ 393 (433)
..++.+.++.++. .++..+++ +|+- +...++.||+++|+|+|+. +...+...+.+. +.|..+..
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC--
Confidence 4578888998833 47778885 5554 4567999999999999975 455566666664 67999975
Q ss_pred CCcccHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 041323 394 QSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEK 425 (433)
Q Consensus 394 ~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~ 425 (433)
. +.+++.++|.+++++++..+.+.+++++
T Consensus 143 -~--~~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 143 -N--DIEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp -T--SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -C--CHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 3 8999999999999988666677777765
No 87
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.67 E-value=0.042 Score=53.24 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=81.3
Q ss_pred CchhHHHhhhcCCCCcEEEEEeCCCCC----CCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHh
Q 041323 242 NPEKIIEWLDLHHPGSVLYISFGSQNT----ISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERI 317 (433)
Q Consensus 242 ~~~~l~~~l~~~~~~~vv~vs~GS~~~----~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (433)
++++..+-++.. +.+.|+|=+-+..+ .....+.++++.|++.+..++...+... .++.+.
T Consensus 166 Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~------------~~~~~~--- 229 (335)
T PF04007_consen 166 PDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED------------QRELFE--- 229 (335)
T ss_pred CChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc------------hhhHHh---
Confidence 344555555533 35677776655321 2335577899999998877555544321 111111
Q ss_pred hhcCCCeEE-ecccChHHhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCc
Q 041323 318 EETKQGLLV-RNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQST 396 (433)
Q Consensus 318 ~~~~~~v~~-~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~ 396 (433)
.-++.+ ..-++-.++|.+++ ++|+-|| ....||...|+|.|-+ +.++-...-+.+.+. |+-...
T Consensus 230 ---~~~~~i~~~~vd~~~Ll~~a~--l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gll~~~------- 294 (335)
T PF04007_consen 230 ---KYGVIIPPEPVDGLDLLYYAD--LVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GLLYHS------- 294 (335)
T ss_pred ---ccCccccCCCCCHHHHHHhcC--EEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CCeEec-------
Confidence 112222 24455568999999 5888776 7888999999999964 233322344567774 762222
Q ss_pred ccHHHHHHHHHHHhc
Q 041323 397 IVGHDVKNVIEMVMD 411 (433)
Q Consensus 397 ~~~~~l~~ai~~vl~ 411 (433)
-+.+++.+.|++.+.
T Consensus 295 ~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 295 TDPDEIVEYVRKNLG 309 (335)
T ss_pred CCHHHHHHHHHHhhh
Confidence 256777776666553
No 88
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.61 E-value=0.013 Score=60.55 Aligned_cols=193 Identities=13% Similarity=0.072 Sum_probs=103.2
Q ss_pred CCCCeeEeC-ccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHH--h-
Q 041323 208 TKLPVWTIG-PLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLE--A- 283 (433)
Q Consensus 208 ~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~--~- 283 (433)
.+-++.+|| |+..... .....++..+-++-.++.++|-+--||-...=...+..++++.+ .
T Consensus 379 ~gv~v~yVGHPL~d~i~---------------~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l 443 (608)
T PRK01021 379 SPLRTVYLGHPLVETIS---------------SFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSL 443 (608)
T ss_pred cCCCeEEECCcHHhhcc---------------cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468899999 6654421 01223334444444445679999999976322233444555555 3
Q ss_pred -CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcC-CCeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCC
Q 041323 284 -SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETK-QGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGL 361 (433)
Q Consensus 284 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~Gv 361 (433)
.+.++++...... ..+.+.+.++..+ ..+.+..--...++++.+++ .+.-+|- .+.|+...|+
T Consensus 444 ~~~l~fvvp~a~~~------------~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~ 508 (608)
T PRK01021 444 ASTHQLLVSSANPK------------YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQT 508 (608)
T ss_pred ccCeEEEEecCchh------------hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCC
Confidence 2456655433210 1112222222101 11122110012578888885 6666664 5669999999
Q ss_pred ceEecccc-cchhhHHHHHHH-----------HhcceEEEccCC-CCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 041323 362 PMIGWPIA-AEQTYNSKMLVE-----------EMGMAVELTRGV-QSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGR 428 (433)
Q Consensus 362 P~i~~P~~-~dQ~~na~~~~~-----------~~G~g~~l~~~~-~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~ 428 (433)
|||++=-. .=-+.-++++.+ ..|-.+..+.-. +++.++++|.+++ ++|.|++..+++++..+++.+
T Consensus 509 PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~ 587 (608)
T PRK01021 509 PTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQ 587 (608)
T ss_pred CEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHH
Confidence 99975211 112234455554 001111111101 2578999999997 888887667788888888877
Q ss_pred HHH
Q 041323 429 QIR 431 (433)
Q Consensus 429 ~~~ 431 (433)
.+.
T Consensus 588 ~Lg 590 (608)
T PRK01021 588 AMN 590 (608)
T ss_pred Hhc
Confidence 653
No 89
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.0016 Score=53.07 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=76.0
Q ss_pred EEEEeCCCCCCCHHHHH--HHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecc--cChH-
Q 041323 259 LYISFGSQNTISSSQTM--ELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNW--APQL- 333 (433)
Q Consensus 259 v~vs~GS~~~~~~~~~~--~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~pq~- 333 (433)
++|+-||....=.+.+. ++.+-.+....++|+.+|+.. . .| -++..+.+| .+..
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d-------~----kp----------vagl~v~~F~~~~kiQ 60 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD-------I----KP----------VAGLRVYGFDKEEKIQ 60 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC-------c----cc----------ccccEEEeechHHHHH
Confidence 78999998531122211 233322334468899998752 1 11 023344444 3333
Q ss_pred HhhccCCcceEEecCCchhHHHHHhcCCceEeccccc--------chhhHHHHHHHHhcceEEEccCCCCcccHHHHHHH
Q 041323 334 EILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAA--------EQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNV 405 (433)
Q Consensus 334 ~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~--------dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~a 405 (433)
.+...++ .+|+|||.||+..++..++|.|++|-.. +|..-|..+++ ++.=+..... +..-.+-++..
T Consensus 61 sli~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~spt--e~~L~a~l~~s 135 (161)
T COG5017 61 SLIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSPT--ELVLQAGLQVS 135 (161)
T ss_pred HHhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcCC--chhhHHhHhhh
Confidence 3444555 6999999999999999999999999532 57778888888 4776666541 11123444444
Q ss_pred HHHHh
Q 041323 406 IEMVM 410 (433)
Q Consensus 406 i~~vl 410 (433)
..+++
T Consensus 136 ~~~v~ 140 (161)
T COG5017 136 VADVL 140 (161)
T ss_pred hhhhc
Confidence 44554
No 90
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.60 E-value=0.002 Score=64.63 Aligned_cols=95 Identities=11% Similarity=0.158 Sum_probs=69.3
Q ss_pred CCCeEEecccChHH---hhccCCcceEEe--c-------CCc-hhHHHHHhcCCceEecccccchhhHHHHHHHHhcceE
Q 041323 321 KQGLLVRNWAPQLE---ILSHKSTGAFLS--Y-------CGW-NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAV 387 (433)
Q Consensus 321 ~~~v~~~~~~pq~~---il~~~~v~~~it--h-------gG~-~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~ 387 (433)
..++.+.+|+|+.+ ++..+++ ||. + =|. +++.||+++|+|+|+-... .....+++. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceE
Confidence 35788889999865 5677775 543 2 244 5789999999999986543 233455553 5788
Q ss_pred EEccCCCCcccHHHHHHHHHHHhc-CCchhHHHHHHHHHHH
Q 041323 388 ELTRGVQSTIVGHDVKNVIEMVMD-EAGKGQEMKAKAEKIG 427 (433)
Q Consensus 388 ~l~~~~~~~~~~~~l~~ai~~vl~-~~~~~~~~~~~a~~l~ 427 (433)
.++. -+.++++++|.++++ |+++.+++.+++++..
T Consensus 351 lv~~-----~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v 386 (406)
T PRK15427 351 LVPE-----NDAQALAQRLAAFSQLDTDELAPVVKRAREKV 386 (406)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8764 268999999999998 8866777888887654
No 91
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.56 E-value=0.0011 Score=64.61 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=63.7
Q ss_pred hHHhhccCCcceEEecCCchhHHHHHhcCCceEecccc--cchhhHHHHHH---HHhcceEEEcc----C------CCCc
Q 041323 332 QLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIA--AEQTYNSKMLV---EEMGMAVELTR----G------VQST 396 (433)
Q Consensus 332 q~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~--~dQ~~na~~~~---~~~G~g~~l~~----~------~~~~ 396 (433)
-.+++..++ ++|+-+|..|+ |++..|+|+|+ ++- .-|+.||+++. .. |+.-.+-. . -+++
T Consensus 229 ~~~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~~ 303 (347)
T PRK14089 229 THKALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQEF 303 (347)
T ss_pred HHHHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhccc
Confidence 346788888 59999999999 99999999997 553 46888999998 53 66544411 0 1367
Q ss_pred ccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 041323 397 IVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQI 430 (433)
Q Consensus 397 ~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~ 430 (433)
.|++.|.+++.+. . .+.+++...++.+.+
T Consensus 304 ~t~~~la~~i~~~-~----~~~~~~~~~~l~~~l 332 (347)
T PRK14089 304 VTVENLLKAYKEM-D----REKFFKKSKELREYL 332 (347)
T ss_pred CCHHHHHHHHHHH-H----HHHHHHHHHHHHHHh
Confidence 8999999999772 1 225666666665554
No 92
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.54 E-value=0.00066 Score=66.39 Aligned_cols=140 Identities=11% Similarity=0.136 Sum_probs=89.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChH---Hh
Q 041323 259 LYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQL---EI 335 (433)
Q Consensus 259 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~---~i 335 (433)
.++..|.... ......+++++++.+.++++ +|... ..+.+.+ ....++.+.+|+|+. .+
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~i-vG~g~------------~~~~l~~---~~~~~V~~~g~~~~~~~~~~ 258 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVV-IGDGP------------ELDRLRA---KAGPNVTFLGRVSDEELRDL 258 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEE-EECCh------------hHHHHHh---hcCCCEEEecCCCHHHHHHH
Confidence 3455677653 23356677777777777554 44321 1112221 115789999999985 46
Q ss_pred hccCCcceEEecCCc-hhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC-
Q 041323 336 LSHKSTGAFLSYCGW-NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA- 413 (433)
Q Consensus 336 l~~~~v~~~ithgG~-~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~- 413 (433)
++.+++-++-+.-|. .++.||+++|+|+|+....+ ....+.+. +.|..+.. -+.++++++|.++++++
T Consensus 259 ~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-----~~~~~la~~i~~l~~~~~ 328 (351)
T cd03804 259 YARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-----QTVESLAAAVERFEKNED 328 (351)
T ss_pred HHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-----CCHHHHHHHHHHHHhCcc
Confidence 778886222234343 46789999999999876433 33345554 68888864 26788999999999887
Q ss_pred chhHHHHHHHHHH
Q 041323 414 GKGQEMKAKAEKI 426 (433)
Q Consensus 414 ~~~~~~~~~a~~l 426 (433)
..++.+++++++.
T Consensus 329 ~~~~~~~~~~~~~ 341 (351)
T cd03804 329 FDPQAIRAHAERF 341 (351)
T ss_pred cCHHHHHHHHHhc
Confidence 3455666666544
No 93
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.52 E-value=0.0028 Score=61.58 Aligned_cols=146 Identities=16% Similarity=0.124 Sum_probs=90.5
Q ss_pred cEEEEEeCCCCC-CCHHHHHHHHHHHHhC--CCeEEEEEcCCCCCCCCccccccCCchhHHHHhhh--cCCCeEEecccC
Q 041323 257 SVLYISFGSQNT-ISSSQTMELAIGLEAS--AKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEE--TKQGLLVRNWAP 331 (433)
Q Consensus 257 ~vv~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p 331 (433)
+..++.+|+... ...+.+.+.++.+.+. +..+++. |... ..+.+.....+ .+.++.+.+++|
T Consensus 179 ~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~-G~~~------------~~~~~~~~~~~~~~~~~v~~~g~~~ 245 (355)
T cd03799 179 PLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIV-GDGP------------LRDELEALIAELGLEDRVTLLGAKS 245 (355)
T ss_pred CeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEE-ECCc------------cHHHHHHHHHHcCCCCeEEECCcCC
Confidence 456677787653 2345555555555543 3444443 3221 11122222211 246788999998
Q ss_pred hHH---hhccCCcceEEe----------cCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCccc
Q 041323 332 QLE---ILSHKSTGAFLS----------YCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIV 398 (433)
Q Consensus 332 q~~---il~~~~v~~~it----------hgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~ 398 (433)
+.+ ++..+++ +|. -|.-+++.||+++|+|+|+.+... ....+.+. ..|..+.. -+
T Consensus 246 ~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~~~~~-----~~ 313 (355)
T cd03799 246 QEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGLLVPP-----GD 313 (355)
T ss_pred hHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceEEeCC-----CC
Confidence 654 6667776 444 233479999999999999865432 22344442 48888864 27
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 041323 399 GHDVKNVIEMVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 399 ~~~l~~ai~~vl~~~~~~~~~~~~a~~l~ 427 (433)
.+++.++|.+++++++....+++++++..
T Consensus 314 ~~~l~~~i~~~~~~~~~~~~~~~~a~~~~ 342 (355)
T cd03799 314 PEALADAIERLLDDPELRREMGEAGRARV 342 (355)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 89999999999998866677778777654
No 94
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.48 E-value=0.095 Score=56.24 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=47.8
Q ss_pred chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHh----cCCchhHHHHHHHHH
Q 041323 350 WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVM----DEAGKGQEMKAKAEK 425 (433)
Q Consensus 350 ~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl----~~~~~~~~~~~~a~~ 425 (433)
..++.||+++|+|+|+--.. .....+.+. ..|..++. -+.++++++|.+++ .|++..+.+.+++++
T Consensus 657 GLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfLVdp-----~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~ 726 (784)
T TIGR02470 657 GLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFHIDP-----YHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQ 726 (784)
T ss_pred CHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45999999999999986433 345556663 67999875 36788888888775 577566677777654
No 95
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.45 E-value=0.0008 Score=67.40 Aligned_cols=150 Identities=20% Similarity=0.297 Sum_probs=81.7
Q ss_pred CCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhh---hcCCCeEEecccC
Q 041323 255 PGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIE---ETKQGLLVRNWAP 331 (433)
Q Consensus 255 ~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p 331 (433)
++.++|.+|.+....+++.+..-++-|++.+...+|..+... . . .+.+.+... ..++.+.+.++.+
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~------~-~----~~~l~~~~~~~Gv~~~Ri~f~~~~~ 351 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA------S-G----EARLRRRFAAHGVDPDRIIFSPVAP 351 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST------T-H----HHHHHHHHHHTTS-GGGEEEEE---
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH------H-H----HHHHHHHHHHcCCChhhEEEcCCCC
Confidence 455999999999988999888888888888888899876441 0 0 122222211 1245677778777
Q ss_pred hHH---hhccCCcceEE---ecCCchhHHHHHhcCCceEecccccchhhHH-HHHHHHhcceEEEccCCCCcccHHH-HH
Q 041323 332 QLE---ILSHKSTGAFL---SYCGWNSALESLSQGLPMIGWPIAAEQTYNS-KMLVEEMGMAVELTRGVQSTIVGHD-VK 403 (433)
Q Consensus 332 q~~---il~~~~v~~~i---thgG~~s~~eal~~GvP~i~~P~~~dQ~~na-~~~~~~~G~g~~l~~~~~~~~~~~~-l~ 403 (433)
+.+ .+..+++ ++ ..+|.+|++|||+.|||+|..|--.-.-..+ ..+.. +|+.-.+-. +.++ +.
T Consensus 352 ~~ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~------s~~eYv~ 422 (468)
T PF13844_consen 352 REEHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD------SEEEYVE 422 (468)
T ss_dssp HHHHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S------SHHHHHH
T ss_pred HHHHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC------CHHHHHH
Confidence 554 3344554 33 4578899999999999999999543333333 44555 688766544 3344 44
Q ss_pred HHHHHHhcCCchhHHHHHHHHH
Q 041323 404 NVIEMVMDEAGKGQEMKAKAEK 425 (433)
Q Consensus 404 ~ai~~vl~~~~~~~~~~~~a~~ 425 (433)
.|| ++-+|.+..+.+|++.++
T Consensus 423 ~Av-~La~D~~~l~~lR~~Lr~ 443 (468)
T PF13844_consen 423 IAV-RLATDPERLRALRAKLRD 443 (468)
T ss_dssp HHH-HHHH-HHHHHHHHHHHHH
T ss_pred HHH-HHhCCHHHHHHHHHHHHH
Confidence 444 455666566666665543
No 96
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=97.39 E-value=0.0037 Score=61.67 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=60.6
Q ss_pred CCCeEEecccChH---HhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcc
Q 041323 321 KQGLLVRNWAPQL---EILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTI 397 (433)
Q Consensus 321 ~~~v~~~~~~pq~---~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~ 397 (433)
..++.+.+.+++. .++++++ ++|+..|.. +.||+++|+|+|.++..++++. +.+. |.++.+..
T Consensus 254 ~~~v~~~~~~~~~~~~~~l~~ad--~vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~~------ 319 (365)
T TIGR00236 254 SKRVHLIEPLEYLDFLNLAANSH--LILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVGT------ 319 (365)
T ss_pred CCCEEEECCCChHHHHHHHHhCC--EEEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeCC------
Confidence 3578777766654 4566777 588877654 7999999999999876555542 3334 77776643
Q ss_pred cHHHHHHHHHHHhcCCchhHHH
Q 041323 398 VGHDVKNVIEMVMDEAGKGQEM 419 (433)
Q Consensus 398 ~~~~l~~ai~~vl~~~~~~~~~ 419 (433)
++++|.+++.++++|++..+.+
T Consensus 320 d~~~i~~ai~~ll~~~~~~~~~ 341 (365)
T TIGR00236 320 DKENITKAAKRLLTDPDEYKKM 341 (365)
T ss_pred CHHHHHHHHHHHHhChHHHHHh
Confidence 6899999999999887433333
No 97
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.34 E-value=0.017 Score=56.75 Aligned_cols=190 Identities=19% Similarity=0.242 Sum_probs=100.2
Q ss_pred CCCCeeEeC-ccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHH---HHh
Q 041323 208 TKLPVWTIG-PLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIG---LEA 283 (433)
Q Consensus 208 ~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~a---l~~ 283 (433)
.+.++.+|| |+..... ......+..+.+ -.+++++|.+--||-..-=...+..++++ +.+
T Consensus 151 ~g~~~~~VGHPl~d~~~---------------~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~ 214 (373)
T PF02684_consen 151 HGVPVTYVGHPLLDEVK---------------PEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKK 214 (373)
T ss_pred cCCCeEEECCcchhhhc---------------cCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 357899999 6654431 111233333343 33456789999999753112223333444 333
Q ss_pred --CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEe-cccChHHhhccCCcceEEecCCchhHHHHHhcC
Q 041323 284 --SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVR-NWAPQLEILSHKSTGAFLSYCGWNSALESLSQG 360 (433)
Q Consensus 284 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~pq~~il~~~~v~~~ithgG~~s~~eal~~G 360 (433)
.+.++++.+.... ..+.+.........++.+. ..-.-.+++..+++ ++++ +| ..+.|+...|
T Consensus 215 ~~p~l~fvvp~a~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~-al~~-SG-TaTLE~Al~g 279 (373)
T PF02684_consen 215 QRPDLQFVVPVAPEV------------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA-ALAA-SG-TATLEAALLG 279 (373)
T ss_pred hCCCeEEEEecCCHH------------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc-hhhc-CC-HHHHHHHHhC
Confidence 3566666554321 1111111122112222221 22234567888885 3444 43 5677999999
Q ss_pred CceEecc-cccchhhHHHHHHHHhcceEEEcc---CC-------CCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 041323 361 LPMIGWP-IAAEQTYNSKMLVEEMGMAVELTR---GV-------QSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQ 429 (433)
Q Consensus 361 vP~i~~P-~~~dQ~~na~~~~~~~G~g~~l~~---~~-------~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~ 429 (433)
+|||++= ...=.+.-|+++.+. .. +.+.. ++ +++.|++.+.+++.+++.|.+..+..++..+++.+.
T Consensus 280 ~P~Vv~Yk~~~lt~~iak~lvk~-~~-isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~ 357 (373)
T PF02684_consen 280 VPMVVAYKVSPLTYFIAKRLVKV-KY-ISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKELFREIRQL 357 (373)
T ss_pred CCEEEEEcCcHHHHHHHHHhhcC-CE-eechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 9999762 112233355555542 32 11111 11 367899999999999999985444455555555544
Q ss_pred H
Q 041323 430 I 430 (433)
Q Consensus 430 ~ 430 (433)
.
T Consensus 358 ~ 358 (373)
T PF02684_consen 358 L 358 (373)
T ss_pred h
Confidence 3
No 98
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.33 E-value=0.0071 Score=60.04 Aligned_cols=94 Identities=10% Similarity=0.140 Sum_probs=65.8
Q ss_pred CCCeEEecccChHH---hhccCCcceEEec----CCc-hhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccC
Q 041323 321 KQGLLVRNWAPQLE---ILSHKSTGAFLSY----CGW-NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRG 392 (433)
Q Consensus 321 ~~~v~~~~~~pq~~---il~~~~v~~~ith----gG~-~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~ 392 (433)
..++.+.+++|+.+ +++.+++ +|.- -|. .++.||+++|+|+|+.... .+...+.+. ..|..+..
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~- 327 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE- 327 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC-
Confidence 45778889998654 5778886 4432 333 5788999999999987643 244455553 67875532
Q ss_pred CCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 041323 393 VQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKI 426 (433)
Q Consensus 393 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l 426 (433)
..+.++++++|.++++|++ ..++.+++++.
T Consensus 328 ---~~d~~~la~~I~~ll~d~~-~~~~~~~ar~~ 357 (380)
T PRK15484 328 ---PMTSDSIISDINRTLADPE-LTQIAEQAKDF 357 (380)
T ss_pred ---CCCHHHHHHHHHHHHcCHH-HHHHHHHHHHH
Confidence 2478999999999999883 45667776654
No 99
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.24 E-value=0.0063 Score=60.71 Aligned_cols=93 Identities=19% Similarity=0.229 Sum_probs=67.5
Q ss_pred CCCeEEecccChH-HhhccCCcceEE--ec--CCc-hhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCC
Q 041323 321 KQGLLVRNWAPQL-EILSHKSTGAFL--SY--CGW-NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQ 394 (433)
Q Consensus 321 ~~~v~~~~~~pq~-~il~~~~v~~~i--th--gG~-~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~ 394 (433)
..++.+.+++++. .++..+++ +| ++ .|. +.+.||+++|+|+|+-+...+.. .+.. |.|..+..
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~~--- 347 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVAA--- 347 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeCC---
Confidence 4678888999865 47788886 44 33 354 46999999999999987543211 1222 66776643
Q ss_pred CcccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 041323 395 STIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 395 ~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~ 427 (433)
+.++++++|.++++|++..+.+.+++++..
T Consensus 348 ---~~~~la~ai~~ll~~~~~~~~~~~~ar~~v 377 (397)
T TIGR03087 348 ---DPADFAAAILALLANPAEREELGQAARRRV 377 (397)
T ss_pred ---CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 689999999999998866778888887754
No 100
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.24 E-value=0.0032 Score=62.05 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=73.0
Q ss_pred CCCeEEecccChH-HhhccCCcceEEecC--CchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcc
Q 041323 321 KQGLLVRNWAPQL-EILSHKSTGAFLSYC--GWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTI 397 (433)
Q Consensus 321 ~~~v~~~~~~pq~-~il~~~~v~~~ithg--G~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~ 397 (433)
..++.+.++.++. .++..+++-++.++. ...++.||+++|+|+|+..... .....+.+. ..|..++. -
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-----~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-----G 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-----C
Confidence 3467777776655 478888874455543 3568999999999999864321 133455553 67888864 3
Q ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 041323 398 VGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQI 430 (433)
Q Consensus 398 ~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~ 430 (433)
+.++++++|.+++++++..+.+.+++++.++.+
T Consensus 331 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 331 DIEALAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred cHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 689999999999999877788888888876654
No 101
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.23 E-value=0.0029 Score=62.18 Aligned_cols=147 Identities=15% Similarity=0.115 Sum_probs=88.1
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhC--CCeEEEEEcCCCCCCCCccccccCCchhHHHHhhh--cCCCeEEecccCh-
Q 041323 258 VLYISFGSQNTISSSQTMELAIGLEAS--AKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEE--TKQGLLVRNWAPQ- 332 (433)
Q Consensus 258 vv~vs~GS~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~pq- 332 (433)
.+++..|.........+..+++++.+. +.+++ .+|.+. ..+.+.+.+++ .+.++.+.+|.++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~-ivG~g~------------~~~~l~~~~~~~~l~~~v~f~G~~~~~ 247 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLH-IIGDGS------------DFEKCKAYSRELGIEQRIIWHGWQSQP 247 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEE-EEeCCc------------cHHHHHHHHHHcCCCCeEEEecccCCc
Confidence 456677776432233455667776654 34433 445331 11223332221 1457888888754
Q ss_pred -HH---hhccCCcceEEe--c--CCchhHHHHHhcCCceEecc-cccchhhHHHHHHHHhcceEEEccCCCCcccHHHHH
Q 041323 333 -LE---ILSHKSTGAFLS--Y--CGWNSALESLSQGLPMIGWP-IAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVK 403 (433)
Q Consensus 333 -~~---il~~~~v~~~it--h--gG~~s~~eal~~GvP~i~~P-~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~ 403 (433)
.. .+..+++ +|. + |-..++.||+++|+|+|+.- ..+ ....+++. ..|..+.. -+.++++
T Consensus 248 ~~~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~-----~d~~~la 315 (359)
T PRK09922 248 WEVVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTP-----GNIDEFV 315 (359)
T ss_pred HHHHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECC-----CCHHHHH
Confidence 22 3444564 553 2 22579999999999999764 322 22345553 56888864 3789999
Q ss_pred HHHHHHhcCCc--hhHHHHHHHHHHHHH
Q 041323 404 NVIEMVMDEAG--KGQEMKAKAEKIGRQ 429 (433)
Q Consensus 404 ~ai~~vl~~~~--~~~~~~~~a~~l~~~ 429 (433)
++|.+++++++ ....++++++++.+.
T Consensus 316 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (359)
T PRK09922 316 GKLNKVISGEVKYQHDAIPNSIERFYEV 343 (359)
T ss_pred HHHHHHHhCcccCCHHHHHHHHHHhhHH
Confidence 99999999885 355667777766654
No 102
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.16 E-value=0.011 Score=60.61 Aligned_cols=98 Identities=11% Similarity=0.138 Sum_probs=67.5
Q ss_pred CCCeEEecccChHHhhccCCcceEEec---CCchhHHHHHhcCCceEecccccchhhHHHHHHHH----hc-ceEEEccC
Q 041323 321 KQGLLVRNWAPQLEILSHKSTGAFLSY---CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEE----MG-MAVELTRG 392 (433)
Q Consensus 321 ~~~v~~~~~~pq~~il~~~~v~~~ith---gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~----~G-~g~~l~~~ 392 (433)
..++.+.+...-.++++.+++ .+++. |--+++.||+++|+|+|+-.. ......+.+. +| .|..+..
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv-~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~~- 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV-LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVPP- 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE-EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEECC-
Confidence 357777776666678888886 22222 334689999999999998533 3333344431 12 6777764
Q ss_pred CCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 041323 393 VQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGR 428 (433)
Q Consensus 393 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~ 428 (433)
-+.++++++|.++++|++..+.+.+++++..+
T Consensus 427 ----~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~ 458 (475)
T cd03813 427 ----ADPEALARAILRLLKDPELRRAMGEAGRKRVE 458 (475)
T ss_pred ----CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 36899999999999998777778887776443
No 103
>PLN02949 transferase, transferring glycosyl groups
Probab=97.09 E-value=0.42 Score=48.77 Aligned_cols=97 Identities=13% Similarity=0.091 Sum_probs=61.0
Q ss_pred CCCeEEecccChHH---hhccCCcceEEe---cCCc-hhHHHHHhcCCceEecccccchhhHHHHHHH-Hhc-ceEEEcc
Q 041323 321 KQGLLVRNWAPQLE---ILSHKSTGAFLS---YCGW-NSALESLSQGLPMIGWPIAAEQTYNSKMLVE-EMG-MAVELTR 391 (433)
Q Consensus 321 ~~~v~~~~~~pq~~---il~~~~v~~~it---hgG~-~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~-~~G-~g~~l~~ 391 (433)
.+++.+.+++|+.+ +|..+++ +|. +=|. .++.||+++|+|+|+....+--. ..+.+ .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC--
Confidence 45788889998665 5677774 552 2233 37999999999999876432100 00111 001 23322
Q ss_pred CCCCcccHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH
Q 041323 392 GVQSTIVGHDVKNVIEMVMDE-AGKGQEMKAKAEKIGRQ 429 (433)
Q Consensus 392 ~~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~~a~~l~~~ 429 (433)
-+.++++++|.+++++ ++..++|++++++..+.
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~ 440 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETERLEIAAAARKRANR 440 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 1689999999999984 44566788887766543
No 104
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.07 E-value=0.0022 Score=53.27 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=49.6
Q ss_pred CCCeEEecccChH-HhhccCCcceEEecC--C-chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCc
Q 041323 321 KQGLLVRNWAPQL-EILSHKSTGAFLSYC--G-WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQST 396 (433)
Q Consensus 321 ~~~v~~~~~~pq~-~il~~~~v~~~ithg--G-~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~ 396 (433)
..++.+.+|++.. ++++.+++.+..+.. | -+++.|++++|+|+|+.+.. .....+.. +.|..+..
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~~~----- 120 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLVAN----- 120 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-TT-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEECC-----
Confidence 4589999998644 478889985554432 2 48999999999999997651 22234443 78877743
Q ss_pred ccHHHHHHHHHHHhcC
Q 041323 397 IVGHDVKNVIEMVMDE 412 (433)
Q Consensus 397 ~~~~~l~~ai~~vl~~ 412 (433)
+++++.++|.++++|
T Consensus 121 -~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 121 -DPEELAEAIERLLND 135 (135)
T ss_dssp --HHHHHHHHHHHHH-
T ss_pred -CHHHHHHHHHHHhcC
Confidence 789999999999865
No 105
>PLN00142 sucrose synthase
Probab=96.99 E-value=0.31 Score=52.51 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=45.9
Q ss_pred hhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHH----HhcCCchhHHHHHHHHHH
Q 041323 351 NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEM----VMDEAGKGQEMKAKAEKI 426 (433)
Q Consensus 351 ~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~----vl~~~~~~~~~~~~a~~l 426 (433)
.++.||+++|+|+|+-... .....+++. ..|..++. -+.++++++|.+ ++.|++.++.|.+++++.
T Consensus 681 LvvLEAMA~GlPVVATdvG----G~~EIV~dG-~tG~LV~P-----~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~r 750 (815)
T PLN00142 681 LTVVEAMTCGLPTFATCQG----GPAEIIVDG-VSGFHIDP-----YHGDEAANKIADFFEKCKEDPSYWNKISDAGLQR 750 (815)
T ss_pred HHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4899999999999986443 344455553 56888875 256777777765 456776666777776554
No 106
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=96.94 E-value=0.22 Score=50.08 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=60.8
Q ss_pred CCCeEEecccChHH---hhccCCcceEEe-----cCCchhHHHHHhcCCceEecccccchhhHHHHHH---HHhcceEEE
Q 041323 321 KQGLLVRNWAPQLE---ILSHKSTGAFLS-----YCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLV---EEMGMAVEL 389 (433)
Q Consensus 321 ~~~v~~~~~~pq~~---il~~~~v~~~it-----hgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~---~~~G~g~~l 389 (433)
..+|.+.+++|+.+ +|..+++ +|+ |- ..++.||+++|+|+|+.-..+. ....++ +. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~F-gi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~ 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHF-GIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCc-ccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe
Confidence 35788889998764 6677775 442 22 2488999999999997643221 111222 32 567664
Q ss_pred ccCCCCcccHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHH
Q 041323 390 TRGVQSTIVGHDVKNVIEMVMDEAG-KGQEMKAKAEKIGRQI 430 (433)
Q Consensus 390 ~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~~a~~l~~~~ 430 (433)
. +.++++++|.+++++++ ..+.+++++++..+.+
T Consensus 377 ~-------d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~f 411 (419)
T cd03806 377 S-------TAEEYAEAIEKILSLSEEERLRIRRAARSSVKRF 411 (419)
T ss_pred C-------CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 2 68999999999998653 2333555555544443
No 107
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.81 E-value=0.011 Score=57.31 Aligned_cols=96 Identities=14% Similarity=0.162 Sum_probs=64.1
Q ss_pred CCCeEEecccChHH---hhccCCcceEEec--CCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCC
Q 041323 321 KQGLLVRNWAPQLE---ILSHKSTGAFLSY--CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQS 395 (433)
Q Consensus 321 ~~~v~~~~~~pq~~---il~~~~v~~~ith--gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~ 395 (433)
..++...+|+|+.+ ++..+++-++-+. +..+++.||+++|+|+|+-...+ ....+. ..|..+..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~---~~~~~~~~---- 320 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAG---DAALYFDP---- 320 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceec---CceeeeCC----
Confidence 56888889998764 5677776222221 23468999999999999854421 111122 23555543
Q ss_pred cccHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 041323 396 TIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGR 428 (433)
Q Consensus 396 ~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~ 428 (433)
-+.+++.++|.++++|++....+.+++++..+
T Consensus 321 -~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 352 (365)
T cd03809 321 -LDPEALAAAIERLLEDPALREELRERGLARAK 352 (365)
T ss_pred -CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 26899999999999998666677777765444
No 108
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.78 E-value=0.02 Score=55.97 Aligned_cols=133 Identities=13% Similarity=0.146 Sum_probs=79.8
Q ss_pred CCCcEEEEEeCCCCCCC-H---HHHHHHHHHHHhC-CCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEec
Q 041323 254 HPGSVLYISFGSQNTIS-S---SQTMELAIGLEAS-AKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRN 328 (433)
Q Consensus 254 ~~~~vv~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (433)
.+++.++|++=...... + +.+.+++++|.+. ++++||...+.. . ....+.+.+... +++.+.+
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p-------~----~~~~i~~~l~~~-~~v~~~~ 245 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP-------R----GSDIIIEKLKKY-DNVRLIE 245 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H-------H----HHHHHHHHHTT--TTEEEE-
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc-------h----HHHHHHHHhccc-CCEEEEC
Confidence 45678999985555444 3 4566677777765 789999987541 0 112233344433 4787776
Q ss_pred ccC---hHHhhccCCcceEEecCCchhHH-HHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHH
Q 041323 329 WAP---QLEILSHKSTGAFLSYCGWNSAL-ESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKN 404 (433)
Q Consensus 329 ~~p---q~~il~~~~v~~~ithgG~~s~~-eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ 404 (433)
-++ ...+|.+++ ++|+..| ++. ||.+.|+|+|.+=..++.+.- ... |..+.+. .+.++|.+
T Consensus 246 ~l~~~~~l~ll~~a~--~vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe~----r~~-~~nvlv~------~~~~~I~~ 310 (346)
T PF02350_consen 246 PLGYEEYLSLLKNAD--LVVGDSS--GIQEEAPSLGKPVVNIRDSGERQEG----RER-GSNVLVG------TDPEAIIQ 310 (346)
T ss_dssp ---HHHHHHHHHHES--EEEESSH--HHHHHGGGGT--EEECSSS-S-HHH----HHT-TSEEEET------SSHHHHHH
T ss_pred CCCHHHHHHHHhcce--EEEEcCc--cHHHHHHHhCCeEEEecCCCCCHHH----Hhh-cceEEeC------CCHHHHHH
Confidence 665 456778888 5999999 666 999999999999333333322 222 6666654 37899999
Q ss_pred HHHHHhcCC
Q 041323 405 VIEMVMDEA 413 (433)
Q Consensus 405 ai~~vl~~~ 413 (433)
++.+++++.
T Consensus 311 ai~~~l~~~ 319 (346)
T PF02350_consen 311 AIEKALSDK 319 (346)
T ss_dssp HHHHHHH-H
T ss_pred HHHHHHhCh
Confidence 999999773
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.52 E-value=0.1 Score=55.63 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=64.2
Q ss_pred CCCeEEecccChH-HhhccCCcceEEe---cCCc-hhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCC
Q 041323 321 KQGLLVRNWAPQL-EILSHKSTGAFLS---YCGW-NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQS 395 (433)
Q Consensus 321 ~~~v~~~~~~pq~-~il~~~~v~~~it---hgG~-~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~ 395 (433)
.++|.+.+|.++. .++..+++ ||. +-|. +++.||+++|+|+|+.... .....+.+. ..|..+.. +
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~---~ 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPA---D 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCC---C
Confidence 3578888887754 47777886 443 4454 7899999999999987542 244455553 57888876 5
Q ss_pred cccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 041323 396 TIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 396 ~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~ 427 (433)
+.+.+++.+++.+++.+......+++++++..
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 55666777777666643222226777776544
No 110
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.51 E-value=0.067 Score=55.08 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=69.7
Q ss_pred CCeEEecccChHHhhccCCcceEEe---cCC-chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCC--CC
Q 041323 322 QGLLVRNWAPQLEILSHKSTGAFLS---YCG-WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGV--QS 395 (433)
Q Consensus 322 ~~v~~~~~~pq~~il~~~~v~~~it---hgG-~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~--~~ 395 (433)
.++...++.+...++..+++ ||. .=| ..++.||+++|+|+|+.-..+ .+...+++. ..|..++.+. .+
T Consensus 376 ~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~d 449 (500)
T TIGR02918 376 DYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEEDD 449 (500)
T ss_pred CeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCccccc
Confidence 45777788888889998886 553 233 468999999999999864321 233455553 5688886310 00
Q ss_pred ccc-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 041323 396 TIV-GHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQI 430 (433)
Q Consensus 396 ~~~-~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~ 430 (433)
.-+ .++++++|.++++++ ..++|.++|++.++.+
T Consensus 450 ~~~~~~~la~~I~~ll~~~-~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 450 EDQIITALAEKIVEYFNSN-DIDAFHEYSYQIAEGF 484 (500)
T ss_pred hhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHhc
Confidence 112 788999999999644 6778888888876553
No 111
>PLN02501 digalactosyldiacylglycerol synthase
Probab=96.42 E-value=1.6 Score=46.17 Aligned_cols=76 Identities=9% Similarity=0.014 Sum_probs=51.2
Q ss_pred CeEEecccChH-HhhccCCcceEEe---cCC-chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcc
Q 041323 323 GLLVRNWAPQL-EILSHKSTGAFLS---YCG-WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTI 397 (433)
Q Consensus 323 ~v~~~~~~pq~-~il~~~~v~~~it---hgG-~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~ 397 (433)
++.+.++.++. .+++..++ ||. +=| .+++.||+++|+|+|+.-..+... +.+ |.+..+..
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~~------ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTYK------ 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEecC------
Confidence 35556777755 47888885 554 222 468999999999999876654321 222 33333332
Q ss_pred cHHHHHHHHHHHhcCC
Q 041323 398 VGHDVKNVIEMVMDEA 413 (433)
Q Consensus 398 ~~~~l~~ai~~vl~~~ 413 (433)
+.+++.++|.+++.++
T Consensus 667 D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 667 TSEDFVAKVKEALANE 682 (794)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 5899999999999887
No 112
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.21 E-value=0.039 Score=56.15 Aligned_cols=125 Identities=20% Similarity=0.330 Sum_probs=81.8
Q ss_pred CCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHH---HhhhcCCCeEEeccc
Q 041323 254 HPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEE---RIEETKQGLLVRNWA 330 (433)
Q Consensus 254 ~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~ 330 (433)
+++.|||.+|--....+++.++.-++-|...+..++|..+.+. .++ ..|.. .....++.+.+.+-+
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa----~ge-------~rf~ty~~~~Gl~p~riifs~va 824 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA----VGE-------QRFRTYAEQLGLEPDRIIFSPVA 824 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccc----cch-------HHHHHHHHHhCCCccceeecccc
Confidence 3455899999888888999988888888888999999998663 111 12211 111114455554444
Q ss_pred ChH-----HhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHH-HHHHHhcceEEEcc
Q 041323 331 PQL-----EILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSK-MLVEEMGMAVELTR 391 (433)
Q Consensus 331 pq~-----~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~-~~~~~~G~g~~l~~ 391 (433)
... ..|+...++-+.+. |..|.++.|+.|+|||.+|.-.---..|. .+.. +|+|-.+-+
T Consensus 825 ~k~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak 889 (966)
T KOG4626|consen 825 AKEEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK 889 (966)
T ss_pred chHHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh
Confidence 322 23333333334444 68899999999999999997655455554 4455 799987765
No 113
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.08 Score=53.67 Aligned_cols=124 Identities=18% Similarity=0.183 Sum_probs=81.1
Q ss_pred CCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhh---cCCCeEEeccc
Q 041323 254 HPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEE---TKQGLLVRNWA 330 (433)
Q Consensus 254 ~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~ 330 (433)
+++-+||+||+.....+++.+..=++-|+..+--++|..+++. .+.+...+.+..++ ....+++.+-.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~---------~~~~~~~l~~la~~~Gv~~eRL~f~p~~ 497 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGD---------DAEINARLRDLAEREGVDSERLRFLPPA 497 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCC---------cHHHHHHHHHHHHHcCCChhheeecCCC
Confidence 4456999999999988999988878888888888999988642 01111222221110 13345566666
Q ss_pred ChHHhh---ccCCcceEE---ecCCchhHHHHHhcCCceEecccccchhh--HHHHHHHHhcceEEEc
Q 041323 331 PQLEIL---SHKSTGAFL---SYCGWNSALESLSQGLPMIGWPIAAEQTY--NSKMLVEEMGMAVELT 390 (433)
Q Consensus 331 pq~~il---~~~~v~~~i---thgG~~s~~eal~~GvP~i~~P~~~dQ~~--na~~~~~~~G~g~~l~ 390 (433)
|...-+ .-++ +|. -.||..|..|+|+.|||+|..+ ++||. |+..+....|+-..+-
T Consensus 498 ~~~~h~a~~~iAD--lvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA 561 (620)
T COG3914 498 PNEDHRARYGIAD--LVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVA 561 (620)
T ss_pred CCHHHHHhhchhh--eeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhc
Confidence 644333 3344 354 4799999999999999999986 77776 5555444346544443
No 114
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=95.92 E-value=0.036 Score=53.91 Aligned_cols=98 Identities=21% Similarity=0.382 Sum_probs=70.0
Q ss_pred CCCeEEecccChHHhhcc--CCcceEEecC-------Cc------hhHHHHHhcCCceEecccccchhhHHHHHHHHhcc
Q 041323 321 KQGLLVRNWAPQLEILSH--KSTGAFLSYC-------GW------NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGM 385 (433)
Q Consensus 321 ~~~v~~~~~~pq~~il~~--~~v~~~ithg-------G~------~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~ 385 (433)
..|+...+|+|+.++..+ .+.+++...- .+ +-+.+.+++|+|+|+.+ +...+..+++. ++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~~-~~ 280 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVEN-GL 280 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHhC-Cc
Confidence 468889899998875432 1443322211 11 22777899999999864 45677888886 99
Q ss_pred eEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Q 041323 386 AVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 386 g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
|+.++ +.+++.+++.++. + ++.+.|++|++++++++++
T Consensus 281 G~~v~-------~~~el~~~l~~~~-~-~~~~~m~~n~~~~~~~~~~ 318 (333)
T PRK09814 281 GFVVD-------SLEELPEIIDNIT-E-EEYQEMVENVKKISKLLRN 318 (333)
T ss_pred eEEeC-------CHHHHHHHHHhcC-H-HHHHHHHHHHHHHHHHHhc
Confidence 99996 3578999998853 3 3567899999999998874
No 115
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=95.77 E-value=0.41 Score=47.12 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=61.5
Q ss_pred CCCeEEeccc--ChH---HhhccCCcceEEecC---C-chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEcc
Q 041323 321 KQGLLVRNWA--PQL---EILSHKSTGAFLSYC---G-WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTR 391 (433)
Q Consensus 321 ~~~v~~~~~~--pq~---~il~~~~v~~~ithg---G-~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~ 391 (433)
..++.+.++. ++. .+++.+++ |+.-. | ..++.||+++|+|+|+-...+ ....+.+. ..|..++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccC-CceEEeC-
Confidence 3457666776 433 35667774 66433 2 359999999999999865332 23345553 5677654
Q ss_pred CCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 041323 392 GVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 392 ~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~ 427 (433)
+.++++.+|.+++++++..+.|.+++++..
T Consensus 323 ------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~ 352 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPELRRKMGANAREHV 352 (372)
T ss_pred ------CcHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 246777899999988766677777777643
No 116
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=95.74 E-value=0.27 Score=48.61 Aligned_cols=79 Identities=18% Similarity=0.134 Sum_probs=51.9
Q ss_pred CCCeEEecccChHH---hhccCCcceEE------ecCCc-hhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEc
Q 041323 321 KQGLLVRNWAPQLE---ILSHKSTGAFL------SYCGW-NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELT 390 (433)
Q Consensus 321 ~~~v~~~~~~pq~~---il~~~~v~~~i------thgG~-~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~ 390 (433)
..|+...+++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|+.++ ....+.. + |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEe
Confidence 46899999999765 56778862221 22332 458999999999998753 2223332 4 33333
Q ss_pred cCCCCcccHHHHHHHHHHHhcCC
Q 041323 391 RGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 391 ~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
. + +.+++.++|.+++.++
T Consensus 324 ~---~--d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A---D--DPEEFVAAIEKALLED 341 (373)
T ss_pred C---C--CHHHHHHHHHHHHhcC
Confidence 2 2 6899999999976544
No 117
>PHA01633 putative glycosyl transferase group 1
Probab=95.61 E-value=0.29 Score=47.49 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=59.1
Q ss_pred CCCeEEe---cccChH---HhhccCCcceEEec---CC-chhHHHHHhcCCceEeccc------ccch------hhHHHH
Q 041323 321 KQGLLVR---NWAPQL---EILSHKSTGAFLSY---CG-WNSALESLSQGLPMIGWPI------AAEQ------TYNSKM 378 (433)
Q Consensus 321 ~~~v~~~---~~~pq~---~il~~~~v~~~ith---gG-~~s~~eal~~GvP~i~~P~------~~dQ------~~na~~ 378 (433)
+.++.+. ++.++. ++++.+++ ||.= =| ..++.||+++|+|+|+--. .+|+ ..+...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4567666 444544 46677774 6642 24 4588999999999997532 2232 223332
Q ss_pred HH--HHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 041323 379 LV--EEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQI 430 (433)
Q Consensus 379 ~~--~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~ 430 (433)
.. .. |.|..++ ..++++++++|.+++... ..+....++++.++.+
T Consensus 278 ~~~~~~-g~g~~~~-----~~d~~~la~ai~~~~~~~-~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 278 YYDKEH-GQKWKIH-----KFQIEDMANAIILAFELQ-DREERSMKLKELAKKY 324 (335)
T ss_pred hcCccc-Cceeeec-----CCCHHHHHHHHHHHHhcc-ChhhhhHHHHHHHHhc
Confidence 22 23 6666664 358999999999985432 1112344455555443
No 118
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=95.21 E-value=0.53 Score=46.46 Aligned_cols=143 Identities=18% Similarity=0.215 Sum_probs=82.5
Q ss_pred hhHHHhhhcCCCCcEEEEEeCCCC--C-CCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhc
Q 041323 244 EKIIEWLDLHHPGSVLYISFGSQN--T-ISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEET 320 (433)
Q Consensus 244 ~~l~~~l~~~~~~~vv~vs~GS~~--~-~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (433)
+++.+.+.-.++++.|+|++=... . ...+.+.++++++.+.+.++++..... +.....+-+.+......
T Consensus 189 ~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~-------~p~~~~i~~~i~~~~~~- 260 (365)
T TIGR03568 189 EELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNA-------DAGSRIINEAIEEYVNE- 260 (365)
T ss_pred HHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCC-------CCCchHHHHHHHHHhcC-
Confidence 344444443223357888875433 2 335778999999988776666554322 00000011111111110
Q ss_pred CCCeEEecccC---hHHhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEE-EccCCCCc
Q 041323 321 KQGLLVRNWAP---QLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVE-LTRGVQST 396 (433)
Q Consensus 321 ~~~v~~~~~~p---q~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~-l~~~~~~~ 396 (433)
..++.+.+-++ ...++.+++ ++||.++.+- .||.+.|+|+|.+- +.+ ...+. |..+. +.
T Consensus 261 ~~~v~l~~~l~~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~-g~nvl~vg------ 323 (365)
T TIGR03568 261 HPNFRLFKSLGQERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLR-ADSVIDVD------ 323 (365)
T ss_pred CCCEEEECCCChHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhh-cCeEEEeC------
Confidence 34677776555 445778888 5998886555 99999999999774 322 11222 44333 43
Q ss_pred ccHHHHHHHHHHHhc
Q 041323 397 IVGHDVKNVIEMVMD 411 (433)
Q Consensus 397 ~~~~~l~~ai~~vl~ 411 (433)
.++++|.+++.++++
T Consensus 324 ~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 324 PDKEEIVKAIEKLLD 338 (365)
T ss_pred CCHHHHHHHHHHHhC
Confidence 368999999999654
No 119
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.92 E-value=0.68 Score=46.60 Aligned_cols=172 Identities=9% Similarity=0.146 Sum_probs=92.2
Q ss_pred HHHhhhcCCCCcEEEEEeCCCCCC------C----HHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHH
Q 041323 246 IIEWLDLHHPGSVLYISFGSQNTI------S----SSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEE 315 (433)
Q Consensus 246 l~~~l~~~~~~~vv~vs~GS~~~~------~----~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (433)
+..|+.....+++|-|+.-..... . .+.+.++++.|.+.|+++++..-... .+.. ..+....-..+.+
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~-~~~~-~~dD~~~~~~l~~ 301 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTG-IDSY-NKDDRMVALNLRQ 301 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccC-ccCC-CCchHHHHHHHHH
Confidence 445665433445777775543211 1 12344566666667888887653210 0000 0000000112222
Q ss_pred HhhhcCCCe-EEe-cccChH--HhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEE-Ec
Q 041323 316 RIEETKQGL-LVR-NWAPQL--EILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVE-LT 390 (433)
Q Consensus 316 ~~~~~~~~v-~~~-~~~pq~--~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~-l~ 390 (433)
.+.. +..+ ++. ++-+.. .++++++ ++|.. =.-++.-|+..|+|.+.+++ |+. ....+.. +|..-. ++
T Consensus 302 ~~~~-~~~~~vi~~~~~~~e~~~iIs~~d--l~ig~-RlHa~I~a~~~gvP~i~i~Y--~~K-~~~~~~~-lg~~~~~~~ 373 (426)
T PRK10017 302 HVSD-PARYHVVMDELNDLEMGKILGACE--LTVGT-RLHSAIISMNFGTPAIAINY--EHK-SAGIMQQ-LGLPEMAID 373 (426)
T ss_pred hccc-ccceeEecCCCChHHHHHHHhhCC--EEEEe-cchHHHHHHHcCCCEEEeee--hHH-HHHHHHH-cCCccEEec
Confidence 2221 2222 222 233333 6788887 35543 34567788999999999998 433 3334566 688755 55
Q ss_pred cCCCCcccHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Q 041323 391 RGVQSTIVGHDVKNVIEMVMDEAGK-GQEMKAKAEKIGRQI 430 (433)
Q Consensus 391 ~~~~~~~~~~~l~~ai~~vl~~~~~-~~~~~~~a~~l~~~~ 430 (433)
. ..++.++|.+.+.+++++.++ .+.+++++.+++++.
T Consensus 374 ~---~~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~~~ 411 (426)
T PRK10017 374 I---RHLLDGSLQAMVADTLGQLPALNARLAEAVSRERQTG 411 (426)
T ss_pred h---hhCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 4 678889999999999987532 233444555555443
No 120
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=94.91 E-value=0.36 Score=49.35 Aligned_cols=148 Identities=10% Similarity=0.019 Sum_probs=80.9
Q ss_pred EEEEEeCCCCC-CCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChH---
Q 041323 258 VLYISFGSQNT-ISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQL--- 333 (433)
Q Consensus 258 vv~vs~GS~~~-~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~--- 333 (433)
.+++..|.... -..+.+.+.+..+.+.+.++++ +|... ....+.+.+.....+.++.+....+..
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi-~G~g~----------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~ 360 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVV-LGTGD----------PELEEALRELAERYPGNVRVIIGYDEALAH 360 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEE-ECCCC----------HHHHHHHHHHHHHCCCcEEEEEcCCHHHHH
Confidence 45666677763 2334455555555545666554 44320 001122222222234566655555554
Q ss_pred HhhccCCcceEEe---cCCc-hhHHHHHhcCCceEeccccc--chhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHH
Q 041323 334 EILSHKSTGAFLS---YCGW-NSALESLSQGLPMIGWPIAA--EQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIE 407 (433)
Q Consensus 334 ~il~~~~v~~~it---hgG~-~s~~eal~~GvP~i~~P~~~--dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~ 407 (433)
.+++.+++ +|. +-|. .+++||+++|+|.|+-...+ |.-.+...-... +.|..+.. -+++++.++|.
T Consensus 361 ~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~-----~d~~~la~~i~ 432 (473)
T TIGR02095 361 LIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE-----YDPGALLAALS 432 (473)
T ss_pred HHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC-----CCHHHHHHHHH
Confidence 36777775 553 1233 48899999999999765432 211110000121 67888864 36889999999
Q ss_pred HHhc----CCchhHHHHHHHH
Q 041323 408 MVMD----EAGKGQEMKAKAE 424 (433)
Q Consensus 408 ~vl~----~~~~~~~~~~~a~ 424 (433)
+++. +++..+++.+++.
T Consensus 433 ~~l~~~~~~~~~~~~~~~~~~ 453 (473)
T TIGR02095 433 RALRLYRQDPSLWEALQKNAM 453 (473)
T ss_pred HHHHHHhcCHHHHHHHHHHHh
Confidence 9886 6644555665553
No 121
>PRK14098 glycogen synthase; Provisional
Probab=94.29 E-value=0.48 Score=48.72 Aligned_cols=132 Identities=9% Similarity=0.005 Sum_probs=74.5
Q ss_pred EEEEEeCCCCCC-CHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChH---
Q 041323 258 VLYISFGSQNTI-SSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQL--- 333 (433)
Q Consensus 258 vv~vs~GS~~~~-~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~--- 333 (433)
.+++..|.+... ..+.+.+.+..+.+.+.++++ +|.+. ...-+.+.+.....+.++.+..+++..
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvi-vG~G~----------~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~ 376 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVI-CGSGD----------KEYEKRFQDFAEEHPEQVSVQTEFTDAFFH 376 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEE-EeCCC----------HHHHHHHHHHHHHCCCCEEEEEecCHHHHH
Confidence 355566766532 234444444445445666544 45321 001123333333335678887888864
Q ss_pred HhhccCCcceEEecC---Cc-hhHHHHHhcCCceEeccccc--chhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHH
Q 041323 334 EILSHKSTGAFLSYC---GW-NSALESLSQGLPMIGWPIAA--EQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIE 407 (433)
Q Consensus 334 ~il~~~~v~~~ithg---G~-~s~~eal~~GvP~i~~P~~~--dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~ 407 (433)
.+++.+++ |+.-. |. .+.+||+++|+|.|+....+ |.-.+ ...+. +.|..+.. -+++++.++|.
T Consensus 377 ~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~~~-----~d~~~la~ai~ 446 (489)
T PRK14098 377 LAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIFHD-----YTPEALVAKLG 446 (489)
T ss_pred HHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEeCC-----CCHHHHHHHHH
Confidence 47778885 55322 22 47889999999888765432 21110 11123 67888764 36889999998
Q ss_pred HHh
Q 041323 408 MVM 410 (433)
Q Consensus 408 ~vl 410 (433)
+++
T Consensus 447 ~~l 449 (489)
T PRK14098 447 EAL 449 (489)
T ss_pred HHH
Confidence 865
No 122
>PRK00654 glgA glycogen synthase; Provisional
Probab=94.14 E-value=0.84 Score=46.65 Aligned_cols=147 Identities=12% Similarity=0.086 Sum_probs=75.9
Q ss_pred EEEEEeCCCCCC-CHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeE-EecccChH--
Q 041323 258 VLYISFGSQNTI-SSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLL-VRNWAPQL-- 333 (433)
Q Consensus 258 vv~vs~GS~~~~-~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~pq~-- 333 (433)
.+++..|..... ..+.+.+.+..+.+.+.+++++ |... ..+.+.+....++.+.++. ..+|-.+.
T Consensus 283 ~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lviv-G~g~----------~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~ 351 (466)
T PRK00654 283 PLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLL-GTGD----------PELEEAFRALAARYPGKVGVQIGYDEALAH 351 (466)
T ss_pred cEEEEeeccccccChHHHHHHHHHHHhcCCEEEEE-ecCc----------HHHHHHHHHHHHHCCCcEEEEEeCCHHHHH
Confidence 456666776532 2344444444343446776655 4321 0011223322332244444 34553222
Q ss_pred HhhccCCcceEEe---cCCc-hhHHHHHhcCCceEeccccc--chhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHH
Q 041323 334 EILSHKSTGAFLS---YCGW-NSALESLSQGLPMIGWPIAA--EQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIE 407 (433)
Q Consensus 334 ~il~~~~v~~~it---hgG~-~s~~eal~~GvP~i~~P~~~--dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~ 407 (433)
.+++.+++ ||. +-|. .+.+||+++|+|.|+--..+ |.-.+...-.+. +.|..+.. -+++++.++|.
T Consensus 352 ~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-----~d~~~la~~i~ 423 (466)
T PRK00654 352 RIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-----FNAEDLLRALR 423 (466)
T ss_pred HHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-----CCHHHHHHHHH
Confidence 46778885 553 2243 48899999999999764322 211110000222 67888865 36889999999
Q ss_pred HHhc---CCchhHHHHHHH
Q 041323 408 MVMD---EAGKGQEMKAKA 423 (433)
Q Consensus 408 ~vl~---~~~~~~~~~~~a 423 (433)
++++ +++...++.+++
T Consensus 424 ~~l~~~~~~~~~~~~~~~~ 442 (466)
T PRK00654 424 RALELYRQPPLWRALQRQA 442 (466)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 8875 442333444444
No 123
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=94.11 E-value=0.07 Score=41.67 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=43.2
Q ss_pred chhHHHhhhcCCCCcEEEEEeCCCCCC---CH--HHHHHHHHHHHhCCCeEEEEEcCC
Q 041323 243 PEKIIEWLDLHHPGSVLYISFGSQNTI---SS--SQTMELAIGLEASAKSFLWVIRPP 295 (433)
Q Consensus 243 ~~~l~~~l~~~~~~~vv~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~l~~~~~~ 295 (433)
...+..|+.+.++++.|+||+||.... .. ..+..++++++..+..+|..+...
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 345567999988899999999998642 22 468889999999999999998854
No 124
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=94.03 E-value=0.81 Score=44.57 Aligned_cols=190 Identities=17% Similarity=0.169 Sum_probs=102.2
Q ss_pred CCCeeEeC-ccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCCCCCC---HHHHHHHHHHHHh-
Q 041323 209 KLPVWTIG-PLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQNTIS---SSQTMELAIGLEA- 283 (433)
Q Consensus 209 ~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~---~~~~~~~~~al~~- 283 (433)
+-+..+|| |+....+ .....+...+-+....+.+++.+.-||-.+.= ...+.+.++.|+.
T Consensus 155 g~~~~yVGHpl~d~i~---------------~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~ 219 (381)
T COG0763 155 GLPCTYVGHPLADEIP---------------LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKAR 219 (381)
T ss_pred CCCeEEeCChhhhhcc---------------ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 34578888 5554331 12234445555655556679999999976311 2233344444442
Q ss_pred -CCCeEEEEEcCCCCCCCCccccccCCchhHHHH-hhhcC--CCeEEecccChHHhhccCCcceEEecCCchhHHHHHhc
Q 041323 284 -SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEER-IEETK--QGLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQ 359 (433)
Q Consensus 284 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~ 359 (433)
.+.+|+.-+.+.. . +..... .+... .+..+.+.- -.+++..+++ .+.-+|- -+.|+..+
T Consensus 220 ~~~~~~vlp~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~aD~--al~aSGT-~tLE~aL~ 282 (381)
T COG0763 220 YPDLKFVLPLVNAK---------Y----RRIIEEALKWEVAGLSLILIDGE-KRKAFAAADA--ALAASGT-ATLEAALA 282 (381)
T ss_pred CCCceEEEecCcHH---------H----HHHHHHHhhccccCceEEecCch-HHHHHHHhhH--HHHhccH-HHHHHHHh
Confidence 4577777655320 0 111111 11000 112221111 1235666774 5555554 45699999
Q ss_pred CCceEecccccc--hhhHHHHHHHHhcceEEEcc--CC-------CCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 041323 360 GLPMIGWPIAAE--QTYNSKMLVEEMGMAVELTR--GV-------QSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGR 428 (433)
Q Consensus 360 GvP~i~~P~~~d--Q~~na~~~~~~~G~g~~l~~--~~-------~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~ 428 (433)
|+|||+.= -.+ -+.-+++..+. ...-..+- ++ +++.+++.|.+++.+++.|....+.+++..+++.+
T Consensus 283 g~P~Vv~Y-k~~~it~~iak~lvk~-~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~ 360 (381)
T COG0763 283 GTPMVVAY-KVKPITYFIAKRLVKL-PYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQ 360 (381)
T ss_pred CCCEEEEE-eccHHHHHHHHHhccC-CcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHH
Confidence 99999652 111 12233444432 22111110 10 35788999999999999988666788888888888
Q ss_pred HHHc
Q 041323 429 QIRH 432 (433)
Q Consensus 429 ~~~~ 432 (433)
.++.
T Consensus 361 ~l~~ 364 (381)
T COG0763 361 YLRE 364 (381)
T ss_pred HHcC
Confidence 7653
No 125
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.97 E-value=0.3 Score=37.45 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=47.3
Q ss_pred cCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 041323 347 YCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKI 426 (433)
Q Consensus 347 hgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l 426 (433)
+|-..-+.|++++|+|+|.-.. ......+.+ |.....- . +.+++.++|..+++|+++++.+++++++.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~----~--~~~el~~~i~~ll~~~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY----N--DPEELAEKIEYLLENPEERRRIAKNARER 76 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE----C--CHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 3445689999999999997653 222222222 4323332 1 78999999999999997777777777655
Q ss_pred H
Q 041323 427 G 427 (433)
Q Consensus 427 ~ 427 (433)
-
T Consensus 77 v 77 (92)
T PF13524_consen 77 V 77 (92)
T ss_pred H
Confidence 4
No 126
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=93.77 E-value=0.53 Score=48.08 Aligned_cols=135 Identities=10% Similarity=0.004 Sum_probs=71.5
Q ss_pred EEEEEeCCCCCC-CHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChH---
Q 041323 258 VLYISFGSQNTI-SSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQL--- 333 (433)
Q Consensus 258 vv~vs~GS~~~~-~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~--- 333 (433)
.+++..|.+... ..+.+.+.+..+.+.+.+++++ |... ..+.+.+.+.......++.+....++.
T Consensus 297 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 365 (476)
T cd03791 297 PLFGFVGRLTEQKGIDLLLEALPELLELGGQLVIL-GSGD----------PEYEEALRELAARYPGRVAVLIGYDEALAH 365 (476)
T ss_pred CEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEE-ecCC----------HHHHHHHHHHHHhCCCcEEEEEeCCHHHHH
Confidence 456667777632 2344555555555555665543 4321 001122222222223566544333433
Q ss_pred HhhccCCcceEEec---CCc-hhHHHHHhcCCceEeccccc--chhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHH
Q 041323 334 EILSHKSTGAFLSY---CGW-NSALESLSQGLPMIGWPIAA--EQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIE 407 (433)
Q Consensus 334 ~il~~~~v~~~ith---gG~-~s~~eal~~GvP~i~~P~~~--dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~ 407 (433)
.+++.+++ ++.- -|. .+.+||+++|+|+|+-...+ |--.+...-.+. |.|..+.. -+.+++.++|.
T Consensus 366 ~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~-----~~~~~l~~~i~ 437 (476)
T cd03791 366 LIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG-----YNADALLAALR 437 (476)
T ss_pred HHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC-----CCHHHHHHHHH
Confidence 35677775 5532 122 47899999999999765432 111111001122 58888875 36899999999
Q ss_pred HHhc
Q 041323 408 MVMD 411 (433)
Q Consensus 408 ~vl~ 411 (433)
++++
T Consensus 438 ~~l~ 441 (476)
T cd03791 438 RALA 441 (476)
T ss_pred HHHH
Confidence 9875
No 127
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.97 E-value=2.2 Score=44.21 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=45.2
Q ss_pred CCCeEEecccChH-HhhccCCcceEEe---cCC-chhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEcc
Q 041323 321 KQGLLVRNWAPQL-EILSHKSTGAFLS---YCG-WNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTR 391 (433)
Q Consensus 321 ~~~v~~~~~~pq~-~il~~~~v~~~it---hgG-~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~ 391 (433)
..++.+.+|..+. .+|..+++ ||. +-| .+++.||+++|+|+|+... ..+...+.+. ..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~ 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC
Confidence 3678888886543 46788885 664 334 4699999999999997654 3355566664 67888875
No 128
>PHA01630 putative group 1 glycosyl transferase
Probab=92.39 E-value=2.6 Score=40.92 Aligned_cols=41 Identities=12% Similarity=0.039 Sum_probs=26.9
Q ss_pred cccChHH---hhccCCcceEEec-CC-chhHHHHHhcCCceEeccc
Q 041323 328 NWAPQLE---ILSHKSTGAFLSY-CG-WNSALESLSQGLPMIGWPI 368 (433)
Q Consensus 328 ~~~pq~~---il~~~~v~~~ith-gG-~~s~~eal~~GvP~i~~P~ 368 (433)
.++|+.+ +++.+++-++-++ -| ..++.||+++|+|+|+.-.
T Consensus 196 ~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~ 241 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEK 241 (331)
T ss_pred ccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCC
Confidence 3466544 5777776222233 22 4689999999999998654
No 129
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=90.67 E-value=10 Score=36.45 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=42.9
Q ss_pred cChHHhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhh---HHHHHHHHhcceEEEcc
Q 041323 330 APQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTY---NSKMLVEEMGMAVELTR 391 (433)
Q Consensus 330 ~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~---na~~~~~~~G~g~~l~~ 391 (433)
=|+...|+.++. ++||==-.+-+.||+..|+|+.++|...-... -...+++. |.-.....
T Consensus 220 nPy~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~-g~~r~~~~ 282 (311)
T PF06258_consen 220 NPYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEER-GAVRPFTG 282 (311)
T ss_pred CcHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHC-CCEEECCC
Confidence 367788999996 67777677899999999999999998761111 22356663 66555543
No 130
>PRK14099 glycogen synthase; Provisional
Probab=88.41 E-value=5.8 Score=40.77 Aligned_cols=96 Identities=8% Similarity=0.144 Sum_probs=52.4
Q ss_pred CCCe-EEecccChHH-hh-ccCCcceEEe---cCC-chhHHHHHhcCCceEeccccc--chhhHHHH---HHHHhcceEE
Q 041323 321 KQGL-LVRNWAPQLE-IL-SHKSTGAFLS---YCG-WNSALESLSQGLPMIGWPIAA--EQTYNSKM---LVEEMGMAVE 388 (433)
Q Consensus 321 ~~~v-~~~~~~pq~~-il-~~~~v~~~it---hgG-~~s~~eal~~GvP~i~~P~~~--dQ~~na~~---~~~~~G~g~~ 388 (433)
+.++ ...+|-.... ++ +.++ +||. +=| ..+.+||+++|+|.|+....+ |--.+... .+.. +.|..
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aD--ifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l 425 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGAD--ALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQ 425 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCC--EEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEE
Confidence 3344 4556633222 22 3355 4664 233 357889999997766654321 21111100 0111 46888
Q ss_pred EccCCCCcccHHHHHHHHHH---HhcCCchhHHHHHHHH
Q 041323 389 LTRGVQSTIVGHDVKNVIEM---VMDEAGKGQEMKAKAE 424 (433)
Q Consensus 389 l~~~~~~~~~~~~l~~ai~~---vl~~~~~~~~~~~~a~ 424 (433)
++. -+++++.++|.+ +++|++..+++.++++
T Consensus 426 ~~~-----~d~~~La~ai~~a~~l~~d~~~~~~l~~~~~ 459 (485)
T PRK14099 426 FSP-----VTADALAAALRKTAALFADPVAWRRLQRNGM 459 (485)
T ss_pred eCC-----CCHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 865 368999999987 5667655556666653
No 131
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=87.72 E-value=0.85 Score=38.08 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCC
Q 041323 22 FLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFC 74 (433)
Q Consensus 22 ~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~ 74 (433)
+..||++|.+ +||+|+++++......-+ ... .++.+..++.+
T Consensus 7 ~~~l~~~L~~-~G~~V~v~~~~~~~~~~~-~~~---------~~~~~~~~~~~ 48 (160)
T PF13579_consen 7 VRELARALAA-RGHEVTVVTPQPDPEDDE-EEE---------DGVRVHRLPLP 48 (160)
T ss_dssp HHHHHHHHHH-TT-EEEEEEE---GGG-S-EEE---------TTEEEEEE--S
T ss_pred HHHHHHHHHH-CCCEEEEEecCCCCcccc-ccc---------CCceEEeccCC
Confidence 6789999999 999999999655443221 111 57888777754
No 132
>PRK10125 putative glycosyl transferase; Provisional
Probab=85.84 E-value=9.1 Score=38.32 Aligned_cols=115 Identities=10% Similarity=0.039 Sum_probs=62.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhCCCe-EEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccC-h---H
Q 041323 259 LYISFGSQNTISSSQTMELAIGLEASAKS-FLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAP-Q---L 333 (433)
Q Consensus 259 v~vs~GS~~~~~~~~~~~~~~al~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-q---~ 333 (433)
+++..|.........+..+++++...+.+ -++.+|... .. . ..++...++.. + .
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~---------~~-~-----------~~~v~~~g~~~~~~~l~ 301 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS---------PF-T-----------AGNVVNHGFETDKRKLM 301 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC---------cc-c-----------ccceEEecCcCCHHHHH
Confidence 33444543222223356788888775433 355566421 00 0 12344445542 2 2
Q ss_pred HhhccCCcceEEec----CCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHH
Q 041323 334 EILSHKSTGAFLSY----CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIE 407 (433)
Q Consensus 334 ~il~~~~v~~~ith----gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~ 407 (433)
.+++.+++ ||.- |--+++.||+++|+|+|+-...+ ... +.+. +.|..++. + +.++|+++++
T Consensus 302 ~~y~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~E-iv~~-~~G~lv~~---~--d~~~La~~~~ 366 (405)
T PRK10125 302 SALNQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----ARE-VLQK-SGGKTVSE---E--EVLQLAQLSK 366 (405)
T ss_pred HHHHhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHH-hEeC-CcEEEECC---C--CHHHHHhccC
Confidence 34555664 5542 33468999999999999887654 122 3333 57888876 3 5566766543
No 133
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.97 E-value=5.2 Score=37.77 Aligned_cols=83 Identities=16% Similarity=0.251 Sum_probs=51.3
Q ss_pred cccChHHhhccCCcceEEecCCchhHH-HHHhcCCceEecccccchhh--HHHHHHHHhcceEEEccCCCCcccHHHHHH
Q 041323 328 NWAPQLEILSHKSTGAFLSYCGWNSAL-ESLSQGLPMIGWPIAAEQTY--NSKMLVEEMGMAVELTRGVQSTIVGHDVKN 404 (433)
Q Consensus 328 ~~~pq~~il~~~~v~~~ithgG~~s~~-eal~~GvP~i~~P~~~dQ~~--na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ 404 (433)
.|-...++|.++++ .|-- +||.. +++--|||+|.+|-.+-|+. .|.+=.+-+|+.+.+-. .+.+.+.
T Consensus 301 sqqsfadiLH~ada--algm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~------~~aq~a~ 370 (412)
T COG4370 301 SQQSFADILHAADA--ALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR------PEAQAAA 370 (412)
T ss_pred eHHHHHHHHHHHHH--HHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC------CchhhHH
Confidence 44444556655553 2221 34444 46788999999999988876 56666666777777754 2333333
Q ss_pred -HHHHHhcCCchhHHHH
Q 041323 405 -VIEMVMDEAGKGQEMK 420 (433)
Q Consensus 405 -ai~~vl~~~~~~~~~~ 420 (433)
+.++++.|+++...+|
T Consensus 371 ~~~q~ll~dp~r~~air 387 (412)
T COG4370 371 QAVQELLGDPQRLTAIR 387 (412)
T ss_pred HHHHHHhcChHHHHHHH
Confidence 3444899885555555
No 134
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=84.86 E-value=2.4 Score=35.42 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=39.9
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhh
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (433)
+++|++.+.+..+|-.=.+-++..|.+ .|++|+++...-..+.+..
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~-~G~eVi~LG~~vp~e~i~~ 48 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTE-AGFEVINLGVMTSQEEFID 48 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHH
Confidence 679999999999999999999999999 9999999987665554443
No 135
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=84.79 E-value=7.7 Score=34.17 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=24.6
Q ss_pred CcccHHHHHHHHHHHHhcCCcEEEEEe
Q 041323 15 AHGHLIPFLALAKQIHRSTGFKITIAN 41 (433)
Q Consensus 15 ~~GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (433)
..|+-.....||+.|.+ +||+|++.+
T Consensus 12 ~~G~~~~~~~l~~~L~~-~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALAR-RGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHH-cCCeEEEEE
Confidence 56999999999999999 999999998
No 136
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=84.07 E-value=1.2 Score=46.12 Aligned_cols=92 Identities=9% Similarity=0.113 Sum_probs=65.4
Q ss_pred CCeEEecccChH---HhhccCCcceEEecC---CchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCC
Q 041323 322 QGLLVRNWAPQL---EILSHKSTGAFLSYC---GWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQS 395 (433)
Q Consensus 322 ~~v~~~~~~pq~---~il~~~~v~~~ithg---G~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~ 395 (433)
..+.+.++.+.. .++.... ++|.=+ |.++..||+.+|+|+| .......+++. .=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC-----
Confidence 456777777732 3566666 466544 6779999999999999 33334455553 5676663
Q ss_pred cccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 041323 396 TIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQI 430 (433)
Q Consensus 396 ~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~ 430 (433)
+..+|.++|..+|.+......+...|-+.++.+
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~y 506 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIKLIDDY 506 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 579999999999999867777777777666544
No 137
>PLN02939 transferase, transferring glycosyl groups
Probab=83.90 E-value=26 Score=38.86 Aligned_cols=94 Identities=9% Similarity=0.064 Sum_probs=57.4
Q ss_pred CCeEEecccChH---HhhccCCcceEEec----CCchhHHHHHhcCCceEeccccc--chhhH--HHHH-HHHhcceEEE
Q 041323 322 QGLLVRNWAPQL---EILSHKSTGAFLSY----CGWNSALESLSQGLPMIGWPIAA--EQTYN--SKML-VEEMGMAVEL 389 (433)
Q Consensus 322 ~~v~~~~~~pq~---~il~~~~v~~~ith----gG~~s~~eal~~GvP~i~~P~~~--dQ~~n--a~~~-~~~~G~g~~l 389 (433)
.+|.+..+.+.. .+++.+++ ||.- +-..+++||+++|+|.|+....+ |--.+ ...+ ... +-|..+
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf 913 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTF 913 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEe
Confidence 467777777764 47877875 6642 22358999999999999765533 21111 0111 112 567777
Q ss_pred ccCCCCcccHHHHHHHHHHHhc----CCchhHHHHHHH
Q 041323 390 TRGVQSTIVGHDVKNVIEMVMD----EAGKGQEMKAKA 423 (433)
Q Consensus 390 ~~~~~~~~~~~~l~~ai~~vl~----~~~~~~~~~~~a 423 (433)
.. -+++.+..+|.+++. +++..+.+.+++
T Consensus 914 ~~-----~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~a 946 (977)
T PLN02939 914 LT-----PDEQGLNSALERAFNYYKRKPEVWKQLVQKD 946 (977)
T ss_pred cC-----CCHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 54 367888888887764 554455555544
No 138
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=83.69 E-value=29 Score=35.14 Aligned_cols=90 Identities=9% Similarity=0.110 Sum_probs=59.4
Q ss_pred CCeE-EecccC-h-HHhhccCCcceEEecCCc--hhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCc
Q 041323 322 QGLL-VRNWAP-Q-LEILSHKSTGAFLSYCGW--NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQST 396 (433)
Q Consensus 322 ~~v~-~~~~~p-q-~~il~~~~v~~~ithgG~--~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~ 396 (433)
.|++ ..++.+ . .+++..+++-+-|+|+.. .++.||+.+|+|++..=.... +...+.+ |..+..
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i~~----g~l~~~----- 395 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFIAS----ENIFEH----- 395 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---CcccccC----CceecC-----
Confidence 4554 445566 3 358999999888999874 799999999999997543222 1111111 444543
Q ss_pred ccHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 041323 397 IVGHDVKNVIEMVMDEAGKGQEMKAKAEKI 426 (433)
Q Consensus 397 ~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l 426 (433)
-+.+++.++|.++|.+++ .++++..+-
T Consensus 396 ~~~~~m~~~i~~lL~d~~---~~~~~~~~q 422 (438)
T TIGR02919 396 NEVDQLISKLKDLLNDPN---QFRELLEQQ 422 (438)
T ss_pred CCHHHHHHHHHHHhcCHH---HHHHHHHHH
Confidence 257999999999998872 344444433
No 139
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=83.37 E-value=3 Score=34.35 Aligned_cols=51 Identities=14% Similarity=0.344 Sum_probs=37.0
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcC
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELP 72 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~ 72 (433)
+|++++-....|+ ..+++.|.+ +||+|++++........... .++.+..++
T Consensus 1 KIl~i~~~~~~~~---~~~~~~L~~-~g~~V~ii~~~~~~~~~~~~-----------~~i~~~~~~ 51 (139)
T PF13477_consen 1 KILLIGNTPSTFI---YNLAKELKK-RGYDVHIITPRNDYEKYEII-----------EGIKVIRLP 51 (139)
T ss_pred CEEEEecCcHHHH---HHHHHHHHH-CCCEEEEEEcCCCchhhhHh-----------CCeEEEEec
Confidence 4777777666674 577999999 99999999985554333221 678888776
No 140
>PLN02316 synthase/transferase
Probab=81.46 E-value=48 Score=37.28 Aligned_cols=84 Identities=6% Similarity=-0.054 Sum_probs=49.7
Q ss_pred CCeEEecccChH---HhhccCCcceEEec----CCchhHHHHHhcCCceEeccccc--chhhHH----HHHHHH--hcce
Q 041323 322 QGLLVRNWAPQL---EILSHKSTGAFLSY----CGWNSALESLSQGLPMIGWPIAA--EQTYNS----KMLVEE--MGMA 386 (433)
Q Consensus 322 ~~v~~~~~~pq~---~il~~~~v~~~ith----gG~~s~~eal~~GvP~i~~P~~~--dQ~~na----~~~~~~--~G~g 386 (433)
..+.+....+.. .+++.+++ |+.- +=..+.+||+++|+|.|+-...+ |.-... ...+.. -+.|
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG 977 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG 977 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce
Confidence 455554444543 46777774 6632 22458999999999888754432 211110 000110 1468
Q ss_pred EEEccCCCCcccHHHHHHHHHHHhcC
Q 041323 387 VELTRGVQSTIVGHDVKNVIEMVMDE 412 (433)
Q Consensus 387 ~~l~~~~~~~~~~~~l~~ai~~vl~~ 412 (433)
..+.. -+++.|..+|.+++.+
T Consensus 978 flf~~-----~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 978 FSFDG-----ADAAGVDYALNRAISA 998 (1036)
T ss_pred EEeCC-----CCHHHHHHHHHHHHhh
Confidence 78764 4788899999999865
No 141
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=79.98 E-value=65 Score=31.76 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=31.9
Q ss_pred CeEEecccChH---HhhccCCcceEEecCCchhHHHHHhcCCceEe
Q 041323 323 GLLVRNWAPQL---EILSHKSTGAFLSYCGWNSALESLSQGLPMIG 365 (433)
Q Consensus 323 ~v~~~~~~pq~---~il~~~~v~~~ithgG~~s~~eal~~GvP~i~ 365 (433)
.+.+.+|+||. .+|..+++ .||= |-=|..-|..+|+|+|=
T Consensus 245 ~l~~lPF~~Q~~yD~LLw~cD~-NfVR--GEDSfVRAqwAgkPFvW 287 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLLWACDF-NFVR--GEDSFVRAQWAGKPFVW 287 (374)
T ss_pred EEEECCCCCHHHHHHHHHhCcc-ceEe--cchHHHHHHHhCCCceE
Confidence 46677999976 48888886 4443 67799999999999993
No 142
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=79.48 E-value=19 Score=34.52 Aligned_cols=142 Identities=14% Similarity=0.096 Sum_probs=78.1
Q ss_pred HhhhcCCCCcEEEEEeCCCC---CCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCe
Q 041323 248 EWLDLHHPGSVLYISFGSQN---TISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGL 324 (433)
Q Consensus 248 ~~l~~~~~~~vv~vs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 324 (433)
++++...+++.|.+..|+.. ..+.+.+.++++.|.+.++++++..+... + .+ .-+.+.+.. + +.
T Consensus 171 ~~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~------e--~~-~~~~i~~~~---~-~~ 237 (319)
T TIGR02193 171 AFLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA------E--KQ-RAERIAEAL---P-GA 237 (319)
T ss_pred hhhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH------H--HH-HHHHHHhhC---C-CC
Confidence 34443333455666566433 35678899999999877888776655321 0 00 011111111 1 11
Q ss_pred EEecc--cChH-HhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceE-EEccCCCCcccHH
Q 041323 325 LVRNW--APQL-EILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAV-ELTRGVQSTIVGH 400 (433)
Q Consensus 325 ~~~~~--~pq~-~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~-~l~~~~~~~~~~~ 400 (433)
.+.+- +++. .++++++ +||+. -.|.++=|.+.|+|+|++ ++ +.+..+..= +|-.. .+....-..++++
T Consensus 238 ~l~g~~sL~el~ali~~a~--l~I~~-DSgp~HlAaa~g~P~i~l--fg--~t~p~~~~P-~~~~~~~~~~~~~~~I~~~ 309 (319)
T TIGR02193 238 VVLPKMSLAEVAALLAGAD--AVVGV-DTGLTHLAAALDKPTVTL--YG--ATDPGRTGG-YGKPNVALLGESGANPTPD 309 (319)
T ss_pred eecCCCCHHHHHHHHHcCC--EEEeC-CChHHHHHHHcCCCEEEE--EC--CCCHhhccc-CCCCceEEccCccCCCCHH
Confidence 22232 3333 5778888 47775 567888889999999976 22 112222111 23221 2222123578999
Q ss_pred HHHHHHHHHh
Q 041323 401 DVKNVIEMVM 410 (433)
Q Consensus 401 ~l~~ai~~vl 410 (433)
++.++++++|
T Consensus 310 ~V~~ai~~~~ 319 (319)
T TIGR02193 310 EVLAALEELL 319 (319)
T ss_pred HHHHHHHhhC
Confidence 9999998765
No 143
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=78.85 E-value=27 Score=29.59 Aligned_cols=139 Identities=18% Similarity=0.249 Sum_probs=70.0
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhc
Q 041323 258 VLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILS 337 (433)
Q Consensus 258 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~ 337 (433)
.|.|-+||.. +....+++.+.|++.|..+-..+-+.+ ..|+.+.+.+++ +.
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH-----------R~p~~l~~~~~~----------------~~ 52 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH-----------RTPERLLEFVKE----------------YE 52 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT-----------TSHHHHHHHHHH----------------TT
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc-----------CCHHHHHHHHHH----------------hc
Confidence 4667778876 567788889999998877766655432 245544332221 11
Q ss_pred cCCcceEEecCCch----hHHHHHhcCCceEecccccchhhHHHH----HHHHhcceEEEccCCCCcccHHHHHHHHHHH
Q 041323 338 HKSTGAFLSYCGWN----SALESLSQGLPMIGWPIAAEQTYNSKM----LVEEMGMAVELTRGVQSTIVGHDVKNVIEMV 409 (433)
Q Consensus 338 ~~~v~~~ithgG~~----s~~eal~~GvP~i~~P~~~dQ~~na~~----~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~v 409 (433)
+-..+.||.=.|.. ++.-++ .-+|+|.+|....+.....- +.---|+++..-. -++-.++.-++..|..+
T Consensus 53 ~~~~~viIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~-i~~~~nAA~~A~~ILa~ 130 (150)
T PF00731_consen 53 ARGADVIIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVG-INNGFNAALLAARILAL 130 (150)
T ss_dssp TTTESEEEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-S-STHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEE-ccCchHHHHHHHHHHhc
Confidence 11222477666643 333333 47899999987664432221 1110155544321 01223344444434322
Q ss_pred hcCCchhHHHHHHHHHHHHHHHc
Q 041323 410 MDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 410 l~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
.|+ .++++.+..+++.++
T Consensus 131 -~d~----~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 131 -KDP----ELREKLRAYREKMKE 148 (150)
T ss_dssp -T-H----HHHHHHHHHHHHHHH
T ss_pred -CCH----HHHHHHHHHHHHHHc
Confidence 455 688888887777654
No 144
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=78.62 E-value=3.9 Score=32.94 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=35.5
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhh
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYL 49 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~ 49 (433)
||++.+.+...|....+-++..|.+ .||+|.+.......+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~-~G~~V~~lg~~~~~~~l 42 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRD-AGFEVIDLGVDVPPEEI 42 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHH-CCCEEEECCCCCCHHHH
Confidence 5899999999999999999999999 99999888754444333
No 145
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=76.58 E-value=5.7 Score=38.92 Aligned_cols=77 Identities=12% Similarity=0.147 Sum_probs=59.7
Q ss_pred CeEEe---cccChHHhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccH
Q 041323 323 GLLVR---NWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVG 399 (433)
Q Consensus 323 ~v~~~---~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~ 399 (433)
++.+. +|.+...++.++. +++|-.|. -.-||-..|+|++++=...+++. .+ ++ |.-+.+.. +.
T Consensus 263 ~v~li~pl~~~~f~~L~~~a~--~iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v-~a-gt~~lvg~------~~ 328 (383)
T COG0381 263 RVKLIDPLGYLDFHNLMKNAF--LILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV-EA-GTNILVGT------DE 328 (383)
T ss_pred cEEEeCCcchHHHHHHHHhce--EEEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce-ec-CceEEeCc------cH
Confidence 45543 5677888899998 59998875 45689999999999998888887 22 33 66666654 67
Q ss_pred HHHHHHHHHHhcCC
Q 041323 400 HDVKNVIEMVMDEA 413 (433)
Q Consensus 400 ~~l~~ai~~vl~~~ 413 (433)
+.+.+++.++++++
T Consensus 329 ~~i~~~~~~ll~~~ 342 (383)
T COG0381 329 ENILDAATELLEDE 342 (383)
T ss_pred HHHHHHHHHHhhCh
Confidence 99999999999987
No 146
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=72.23 E-value=76 Score=30.40 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=78.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhh-hcC-CCeE-EecccC-
Q 041323 259 LYISFGSQNTISSSQTMELAIGLEA---SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIE-ETK-QGLL-VRNWAP- 331 (433)
Q Consensus 259 v~vs~GS~~~~~~~~~~~~~~al~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~-~~~~~p- 331 (433)
+-|-.|..+..+.+ ..++++++.+ .+.+++.-.+-+.+ + ...-+.+.+.-. ..+ .++. ..+++|
T Consensus 147 ~tIlvGNSgd~SN~-Hie~L~~l~~~~~~~v~ii~PlsYp~g-----n---~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f 217 (322)
T PRK02797 147 MTILVGNSGDRSNR-HIEALRALHQQFGDNVKIIVPMGYPAN-----N---QAYIEEVRQAGLALFGAENFQILTEKLPF 217 (322)
T ss_pred eEEEEeCCCCCccc-HHHHHHHHHHHhCCCeEEEEECCcCCC-----C---HHHHHHHHHHHHHhcCcccEEehhhhCCH
Confidence 55556776654433 3444455533 44677776665310 0 001111111111 112 3443 446666
Q ss_pred --hHHhhccCCcceEEec--CCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHH
Q 041323 332 --QLEILSHKSTGAFLSY--CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIE 407 (433)
Q Consensus 332 --q~~il~~~~v~~~ith--gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~ 407 (433)
+.++|+.++++.|+++ =|.||+.-.+..|+|+++-- +-+.+.. +.+ .|+-+..+. +.++...++++=+
T Consensus 218 ~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e-~gv~Vlf~~---d~L~~~~v~e~~r 289 (322)
T PRK02797 218 DDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTE-QGLPVLFTG---DDLDEDIVREAQR 289 (322)
T ss_pred HHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHh-CCCeEEecC---CcccHHHHHHHHH
Confidence 6679999999777775 47899999999999999653 4444444 444 388776665 6788888877644
Q ss_pred HH
Q 041323 408 MV 409 (433)
Q Consensus 408 ~v 409 (433)
++
T Consensus 290 ql 291 (322)
T PRK02797 290 QL 291 (322)
T ss_pred HH
Confidence 44
No 147
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=71.23 E-value=34 Score=31.96 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=38.2
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcC--CcEEEEEeCCCchhhhhh
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRST--GFKITIANTPLNIQYLQN 51 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~r--Gh~Vt~~~~~~~~~~~~~ 51 (433)
+||++-...-|++.=+.++.++|++ + +-+|++++.+.+...++.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~-~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKA-RYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHH-HCCCCEEEEEEChhhHHHHhc
Confidence 5889999999999999999999999 6 489999998877666665
No 148
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=68.73 E-value=7.4 Score=31.60 Aligned_cols=39 Identities=10% Similarity=-0.059 Sum_probs=25.8
Q ss_pred cEEEEeCCCCcc---cHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 041323 6 EHTVMLPLMAHG---HLIPFLALAKQIHRSTGFKITIANTPLN 45 (433)
Q Consensus 6 ~~il~~~~~~~G---Hv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (433)
|+|+|+--|-.+ .-.-.++|+.+-.+ |||+|.++++...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~-RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQR-RGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHH-TT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHH-CCCEEEEEEcCcE
Confidence 467777665544 33567899999999 9999999986544
No 149
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=67.91 E-value=27 Score=34.17 Aligned_cols=99 Identities=9% Similarity=0.131 Sum_probs=54.3
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCch-hHHH-HhhhcCCCeE---------
Q 041323 257 SVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPE-GFEE-RIEETKQGLL--------- 325 (433)
Q Consensus 257 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~v~--------- 325 (433)
.+++.+.||.+...+. ..+++.|++.++.++|+..... .+.+.+|+ ++.- .+. ..++.
T Consensus 3 ~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~-------~e~~l~~~~g~~~~~~~--~~~l~~~~~~~~~~ 71 (352)
T PRK12446 3 KIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQG-------IEKTIIEKENIPYYSIS--SGKLRRYFDLKNIK 71 (352)
T ss_pred eEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCc-------cccccCcccCCcEEEEe--ccCcCCCchHHHHH
Confidence 3777788887754443 4566777778999999875431 11112222 1100 000 00000
Q ss_pred -----EecccChHHhhccCCcceEEecCCchh---HHHHHhcCCceEec
Q 041323 326 -----VRNWAPQLEILSHKSTGAFLSYCGWNS---ALESLSQGLPMIGW 366 (433)
Q Consensus 326 -----~~~~~pq~~il~~~~v~~~ithgG~~s---~~eal~~GvP~i~~ 366 (433)
...+.--..++..-+-+++|++||+-| +..|...|+|+++.
T Consensus 72 ~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 72 DPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 001111112344333336999999986 89999999999864
No 150
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=67.83 E-value=20 Score=37.41 Aligned_cols=96 Identities=13% Similarity=0.184 Sum_probs=54.4
Q ss_pred hHHhhccCCcceEEe-cCCc-hhHHHHHhcCCceEeccccc-chhhHHHHHHHHh-cceEEEccCC--CCcccHHHHHHH
Q 041323 332 QLEILSHKSTGAFLS-YCGW-NSALESLSQGLPMIGWPIAA-EQTYNSKMLVEEM-GMAVELTRGV--QSTIVGHDVKNV 405 (433)
Q Consensus 332 q~~il~~~~v~~~it-hgG~-~s~~eal~~GvP~i~~P~~~-dQ~~na~~~~~~~-G~g~~l~~~~--~~~~~~~~l~~a 405 (433)
..+++..+++.++=+ +=|+ .++.||+++|+|+|+-...+ .... ..+...- ..|+.+.... +-..+.++|+++
T Consensus 468 y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~ 545 (590)
T cd03793 468 YEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIEDPESYGIYIVDRRFKSPDESVQQLTQY 545 (590)
T ss_pred hHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhccCCCceEEEecCCccchHHHHHHHHHH
Confidence 556677777533322 3454 59999999999999876532 2211 1122110 1577775311 112356888899
Q ss_pred HHHHhcCCchhHHHHHHHH--HHHHHH
Q 041323 406 IEMVMDEAGKGQEMKAKAE--KIGRQI 430 (433)
Q Consensus 406 i~~vl~~~~~~~~~~~~a~--~l~~~~ 430 (433)
+.++++.+ .++.+..+.. ++++++
T Consensus 546 m~~~~~~~-~r~~~~~r~~~~r~s~~f 571 (590)
T cd03793 546 MYEFCQLS-RRQRIIQRNRTERLSDLL 571 (590)
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHHhC
Confidence 99988654 4444444433 555543
No 151
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=66.80 E-value=71 Score=30.90 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=39.3
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhc-CCcEEEEEeCCCchhhhhh
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~~~~ 51 (433)
|||++-...-|++.=...+.+.|++. -+.++++++.+.+.+.++.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 46 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSE 46 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhc
Confidence 58999999999999999999999993 3899999999888776665
No 152
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=66.74 E-value=72 Score=29.80 Aligned_cols=94 Identities=19% Similarity=0.309 Sum_probs=56.6
Q ss_pred EEEEEeCCCCC--CCHHHHHH----HHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhh---cCCCeE---
Q 041323 258 VLYISFGSQNT--ISSSQTME----LAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEE---TKQGLL--- 325 (433)
Q Consensus 258 vv~vs~GS~~~--~~~~~~~~----~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~--- 325 (433)
|-++-.|+... ...++... +.+.+++.|.+|+.++... -|+.....++. ...+++
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRR-------------Tp~~~~s~l~~~l~s~~~i~w~~ 230 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRR-------------TPDTVKSILKNNLNSSPGIVWNN 230 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecC-------------CcHHHHHHHHhccccCceeEeCC
Confidence 54555666543 33444333 4566777999999998765 22222221110 011222
Q ss_pred -EecccChHHhhccCCcceEEecC-CchhHHHHHhcCCceEec
Q 041323 326 -VRNWAPQLEILSHKSTGAFLSYC-GWNSALESLSQGLPMIGW 366 (433)
Q Consensus 326 -~~~~~pq~~il~~~~v~~~ithg-G~~s~~eal~~GvP~i~~ 366 (433)
-.++=|+.++|+.++- +|+-. -.|-..||.+.|+|+.+.
T Consensus 231 ~d~g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 231 EDTGYNPYIDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCCCCchHHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 1256699999998884 55544 457889999999999753
No 153
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=66.49 E-value=8 Score=31.75 Aligned_cols=45 Identities=9% Similarity=0.209 Sum_probs=36.3
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhh
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNT 52 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~ 52 (433)
+||++...|+.+=.. ...+.++|.+ +|++|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~-~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKR-AGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHT-TTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhh-CCCEEEEEECCcHHHHhhhh
Confidence 378888888877766 9999999999 99999999988777666653
No 154
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=64.61 E-value=7.4 Score=32.82 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=23.3
Q ss_pred CcccHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 041323 15 AHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (433)
Q Consensus 15 ~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (433)
..|=-.-.+.|+++|++ +||+|+++++...
T Consensus 11 ~GG~e~~~~~l~~~l~~-~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 11 IGGAERVVLNLARALAK-RGHEVTVVSPGVK 40 (177)
T ss_dssp SSHHHHHHHHHHHHHHH-TT-EEEEEESS-T
T ss_pred CChHHHHHHHHHHHHHH-CCCEEEEEEcCCC
Confidence 34666788999999999 9999999976433
No 155
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=64.34 E-value=1.5e+02 Score=28.99 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=82.2
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHh---CCCeEEEEEcCCCCCCCCccccccCCchhHHHHhh-hcC-CCeE-EecccC
Q 041323 258 VLYISFGSQNTISSSQTMELAIGLEA---SAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIE-ETK-QGLL-VRNWAP 331 (433)
Q Consensus 258 vv~vs~GS~~~~~~~~~~~~~~al~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~-~~~~~p 331 (433)
-+.|-.|..+..+.+. .++++++.+ .+.+++.-.+-+. .. +..-+.+.+.-. ..+ .++. +.+++|
T Consensus 185 ~ltILvGNSgd~sNnH-ieaL~~L~~~~~~~~kIivPLsYg~------~n--~~Yi~~V~~~~~~lF~~~~~~iL~e~mp 255 (360)
T PF07429_consen 185 KLTILVGNSGDPSNNH-IEALEALKQQFGDDVKIIVPLSYGA------NN--QAYIQQVIQAGKELFGAENFQILTEFMP 255 (360)
T ss_pred ceEEEEcCCCCCCccH-HHHHHHHHHhcCCCeEEEEECCCCC------ch--HHHHHHHHHHHHHhcCccceeEhhhhCC
Confidence 3566667776544332 333344433 3467776665431 00 001111211111 112 4554 456887
Q ss_pred ---hHHhhccCCcceEEec--CCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHH
Q 041323 332 ---QLEILSHKSTGAFLSY--CGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVI 406 (433)
Q Consensus 332 ---q~~il~~~~v~~~ith--gG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai 406 (433)
+.++|+.++++.|.+. =|.|++.-.+..|+|+++- .+-+.+- .+.+. |+=+.-.. +.++...++++=
T Consensus 256 f~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~-~l~~~-~ipVlf~~---d~L~~~~v~ea~ 327 (360)
T PF07429_consen 256 FDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQ-DLKEQ-GIPVLFYG---DELDEALVREAQ 327 (360)
T ss_pred HHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHH-HHHhC-CCeEEecc---ccCCHHHHHHHH
Confidence 5569999999666664 5899999999999999864 3444443 35553 77777665 789999999988
Q ss_pred HHHhc
Q 041323 407 EMVMD 411 (433)
Q Consensus 407 ~~vl~ 411 (433)
+++.+
T Consensus 328 rql~~ 332 (360)
T PF07429_consen 328 RQLAN 332 (360)
T ss_pred HHHhh
Confidence 87764
No 156
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.21 E-value=1.5e+02 Score=28.99 Aligned_cols=148 Identities=15% Similarity=0.191 Sum_probs=89.9
Q ss_pred CCcEEEEEeCCCCCCCHHHHHHHHHHHHh---------CCC-eEE-EEEcCCCCCCCCccccccCCchhHHHHhhhc-CC
Q 041323 255 PGSVLYISFGSQNTISSSQTMELAIGLEA---------SAK-SFL-WVIRPPVGFDLRGEFRSERLPEGFEERIEET-KQ 322 (433)
Q Consensus 255 ~~~vv~vs~GS~~~~~~~~~~~~~~al~~---------~~~-~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 322 (433)
.++.++||--| ..+.|.+-.+++|+.. .+. .++ .++|++. +.+.+...+.+. -+
T Consensus 253 ~~pallvsSTs--wTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGP------------lkE~Y~~~I~~~~~~ 318 (444)
T KOG2941|consen 253 ERPALLVSSTS--WTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGP------------LKEKYSQEIHEKNLQ 318 (444)
T ss_pred CCCeEEEecCC--CCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCc------------hhHHHHHHHHHhccc
Confidence 45678886433 3345667777777761 121 233 4444432 445666655421 12
Q ss_pred Ce-EEecccC---hHHhhccCCcceEEecCCch-----hHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCC
Q 041323 323 GL-LVRNWAP---QLEILSHKSTGAFLSYCGWN-----SALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGV 393 (433)
Q Consensus 323 ~v-~~~~~~p---q~~il~~~~v~~~ithgG~~-----s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~ 393 (433)
++ +...|+. +..+|+.++.|...|-.-.| -+..-.-+|+|++.+-+- .--..+.+. --|....
T Consensus 319 ~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fk----cl~ELVkh~-eNGlvF~--- 390 (444)
T KOG2941|consen 319 HVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFK----CLDELVKHG-ENGLVFE--- 390 (444)
T ss_pred ceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecch----hHHHHHhcC-CCceEec---
Confidence 33 3447764 66789999997666655444 466667888998877432 122233332 3455554
Q ss_pred CCcccHHHHHHHHHHHhc----CCchhHHHHHHHHHHHH
Q 041323 394 QSTIVGHDVKNVIEMVMD----EAGKGQEMKAKAEKIGR 428 (433)
Q Consensus 394 ~~~~~~~~l~~ai~~vl~----~~~~~~~~~~~a~~l~~ 428 (433)
+.+++++.+..+++ +.++..++|+|+++-++
T Consensus 391 ----Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~e 425 (444)
T KOG2941|consen 391 ----DSEELAEQLQMLFKNFPDNADELNQLKKNLREEQE 425 (444)
T ss_pred ----cHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHh
Confidence 47899999988887 66678889999887654
No 157
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=63.81 E-value=50 Score=31.42 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=34.3
Q ss_pred ceEEecCCchhHHHHHhc----CCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC
Q 041323 342 GAFLSYCGWNSALESLSQ----GLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 342 ~~~ithgG~~s~~eal~~----GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
+++|+-||=||+.+++.. ++|++++-.. .+|... ..+.+++.++|.++++++
T Consensus 65 d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL~------~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 65 DLAVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFIT------DIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccccc------cCCHHHHHHHHHHHHcCC
Confidence 369999999999999763 6788876421 123222 235667777777776543
No 158
>PRK00654 glgA glycogen synthase; Provisional
Probab=63.42 E-value=10 Score=38.74 Aligned_cols=37 Identities=14% Similarity=0.041 Sum_probs=27.8
Q ss_pred cEEEEeCCC---C---cccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 6 EHTVMLPLM---A---HGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 6 ~~il~~~~~---~---~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
|||+++++- . -|--.-.-.|+++|++ +||+|+++++.
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~-~G~~V~v~~p~ 43 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAA-LGHDVRVLLPG 43 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHH-CCCcEEEEecC
Confidence 578887742 2 2444455789999999 99999999964
No 159
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=62.74 E-value=18 Score=32.20 Aligned_cols=47 Identities=13% Similarity=0.027 Sum_probs=40.1
Q ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhh
Q 041323 4 ENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 4 ~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (433)
.+.+|++.+.++..|-....-++..|.+ .|++|+++...-..+.+..
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~-~G~~vi~LG~~vp~e~~v~ 129 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRA-NGFDVIDLGRDVPIDTVVE 129 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh-CCcEEEECCCCCCHHHHHH
Confidence 3579999999999999999999999999 9999999987665554443
No 160
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=62.67 E-value=29 Score=35.35 Aligned_cols=72 Identities=15% Similarity=0.033 Sum_probs=47.5
Q ss_pred ecccChHH---hhccCCcceEEe---cCCc-hhHHHHHhcCCc----eEecccccchhhHHHHHHHHhcceEEEccCCCC
Q 041323 327 RNWAPQLE---ILSHKSTGAFLS---YCGW-NSALESLSQGLP----MIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQS 395 (433)
Q Consensus 327 ~~~~pq~~---il~~~~v~~~it---hgG~-~s~~eal~~GvP----~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~ 395 (433)
.+.+++.+ ++..+++ ||. +=|+ .++.||+++|+| +|+--+.+-- +. ++-|+.++.
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~-------~~-l~~gllVnP---- 406 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA-------QE-LNGALLVNP---- 406 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh-------HH-hCCcEEECC----
Confidence 34566655 4566775 553 3465 478899999999 6655443321 12 245677764
Q ss_pred cccHHHHHHHHHHHhcCC
Q 041323 396 TIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 396 ~~~~~~l~~ai~~vl~~~ 413 (433)
.+.++++++|.++++.+
T Consensus 407 -~d~~~lA~aI~~aL~~~ 423 (456)
T TIGR02400 407 -YDIDGMADAIARALTMP 423 (456)
T ss_pred -CCHHHHHHHHHHHHcCC
Confidence 47899999999999855
No 161
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=62.52 E-value=83 Score=29.27 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=33.0
Q ss_pred CeEEecccChHHhhccCCcceEEecCCchhHHHHHhcCCceEeccc
Q 041323 323 GLLVRNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPI 368 (433)
Q Consensus 323 ~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~ 368 (433)
.+.+.+-.+-.+++.+++ ++||-.+ ++-.||+.+|+|+++...
T Consensus 184 ~~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCceEEecC
Confidence 344556678888999999 4666654 477899999999998764
No 162
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=61.96 E-value=21 Score=28.45 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=34.9
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhh
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQY 48 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~ 48 (433)
.|+++.+.+..-|-.-+.-+|..|.+ .||+|.++......+.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~-~G~~v~~~d~~~~~~~ 42 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRK-AGHEVDILDANVPPEE 42 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHH-TTBEEEEEESSB-HHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHH-CCCeEEEECCCCCHHH
Confidence 47899999999999999999999999 9999999965443333
No 163
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=60.19 E-value=64 Score=31.39 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=44.7
Q ss_pred CCCCCcEEEEeCCCCcccHHHHHHHHHHHHhc-CCcEEEEEeCCCchhhhhh
Q 041323 1 MGSENEHTVMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 1 m~~~~~~il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~~~~ 51 (433)
|+...++||++-...-||+.=..++.+.|+++ .+.++++++.+.+.+.++.
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 52 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE 52 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc
Confidence 77778899999999999999999999999993 3999999998887776654
No 164
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=60.01 E-value=20 Score=31.93 Aligned_cols=45 Identities=13% Similarity=0.086 Sum_probs=38.1
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhh
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (433)
+.+|++.+.++..|-....-++..|.+ .|++|+++...-..+.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~-~G~~vi~lG~~~p~~~l~ 126 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEA-NGFEVIDLGRDVPPEEFV 126 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHH-CCCEEEECCCCCCHHHHH
Confidence 579999999999999999999999999 999999887554444333
No 165
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=58.59 E-value=53 Score=28.08 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=27.7
Q ss_pred cChHHhhccCCcceEEecCCchhHHH---HHhcCCceEeccc
Q 041323 330 APQLEILSHKSTGAFLSYCGWNSALE---SLSQGLPMIGWPI 368 (433)
Q Consensus 330 ~pq~~il~~~~v~~~ithgG~~s~~e---al~~GvP~i~~P~ 368 (433)
.+...++...+...++-=||.||+.| ++.+++|+++++.
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 44555555544446777788898765 5889999998875
No 166
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=57.69 E-value=1.6e+02 Score=27.13 Aligned_cols=80 Identities=14% Similarity=0.288 Sum_probs=50.4
Q ss_pred CCeEEecccC---hHHhhccCCcceEEec---CCch-hHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCC
Q 041323 322 QGLLVRNWAP---QLEILSHKSTGAFLSY---CGWN-SALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQ 394 (433)
Q Consensus 322 ~~v~~~~~~p---q~~il~~~~v~~~ith---gG~~-s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~ 394 (433)
.++...++++ ...++..+++ ++.- .|.| ++.||+++|+|+|.-... .....+.+. +.|.....
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~~-~~g~~~~~--- 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVEDG-ETGLLVPP--- 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcCC-CceEecCC---
Confidence 5677778888 2235665664 4443 3554 469999999999866432 222333331 24773332
Q ss_pred CcccHHHHHHHHHHHhcCC
Q 041323 395 STIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 395 ~~~~~~~l~~ai~~vl~~~ 413 (433)
...+++..++..++++.
T Consensus 327 --~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 327 --GDVEELADALEQLLEDP 343 (381)
T ss_pred --CCHHHHHHHHHHHhcCH
Confidence 26799999999998776
No 167
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=57.03 E-value=22 Score=26.34 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=31.4
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEe
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIAN 41 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (433)
--++++..+...|..=+-.+|+.|++ .|+.|...-
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~-~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAE-QGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHh-CCCEEEEEC
Confidence 36888889999999999999999999 999998764
No 168
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=56.48 E-value=28 Score=33.35 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=34.2
Q ss_pred CCCCCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhh
Q 041323 1 MGSENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 1 m~~~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (433)
|-+.+|+|+++-.|+-|= -+|..|++ .||+|+++.-.. .+.+..
T Consensus 1 ~~~~~m~I~IiG~GaiG~-----~lA~~L~~-~g~~V~~~~r~~-~~~~~~ 44 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGG-----FYGAMLAR-AGFDVHFLLRSD-YEAVRE 44 (313)
T ss_pred CCCcCcEEEEECCCHHHH-----HHHHHHHH-CCCeEEEEEeCC-HHHHHh
Confidence 667789999998888884 57889999 999999998644 333433
No 169
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=56.44 E-value=96 Score=29.68 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=39.2
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhc-CCcEEEEEeCCCchhhhhh
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~~~~ 51 (433)
|||+++-...-||+-=..++.+.|++. -+.++++++.+.+.+.++.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~ 47 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSW 47 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhc
Confidence 589999999999999999999999993 2999999998776665543
No 170
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=55.24 E-value=16 Score=34.08 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=47.8
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchh-hhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCCC
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQ-YLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPNT 84 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~~ 84 (433)
|+|+++.- .|. -..||+.|.+ +||+|+..+...... .+.+. .+...+.-.+. .+.+....
T Consensus 1 m~ILvlGG--T~e---gr~la~~L~~-~g~~v~~s~~t~~~~~~~~~~-----------g~~~v~~g~l~--~~~l~~~l 61 (256)
T TIGR00715 1 MTVLLMGG--TVD---SRAIAKGLIA-QGIEILVTVTTSEGKHLYPIH-----------QALTVHTGALD--PQELREFL 61 (256)
T ss_pred CeEEEEec--hHH---HHHHHHHHHh-CCCeEEEEEccCCcccccccc-----------CCceEEECCCC--HHHHHHHH
Confidence 35666543 332 5689999999 999998877555433 33321 12233321211 01111111
Q ss_pred CCCccEEEEcCCcccH-------HHHHHHhCCceEEE
Q 041323 85 ENRELVFGSSTFFGWA-------VDVAKSAGTTNVTF 114 (433)
Q Consensus 85 ~~~~~~vv~d~~~~~a-------~~vA~~lgiP~v~~ 114 (433)
....--+|.|...+.| ..+|+++|||++-|
T Consensus 62 ~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 62 KRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 1100035666665544 45688899999987
No 171
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=55.14 E-value=1.3e+02 Score=26.80 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=70.8
Q ss_pred CcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHh
Q 041323 256 GSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEI 335 (433)
Q Consensus 256 ~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~i 335 (433)
+.|++|..|.++ ..-++.|.+.|.++.++.... .+.+..-.. ..++....--.+...
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~--------------~~~l~~l~~--~~~i~~~~~~~~~~d 66 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL--------------ESELTLLAE--QGGITWLARCFDADI 66 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC--------------CHHHHHHHH--cCCEEEEeCCCCHHH
Confidence 347777666554 334566666788766553321 122211111 223433221122334
Q ss_pred hccCCcceEEecCCchhHHHH-----HhcCCceEec--ccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHH
Q 041323 336 LSHKSTGAFLSYCGWNSALES-----LSQGLPMIGW--PIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEM 408 (433)
Q Consensus 336 l~~~~v~~~ithgG~~s~~ea-----l~~GvP~i~~--P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~ 408 (433)
+..+. ++|..-|-..+.+. -..|+|+-++ |-..| +..-..+.+. ++-+.+..+.....-+..+++.|.+
T Consensus 67 l~~~~--lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie~ 142 (205)
T TIGR01470 67 LEGAF--LVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPVLARLLRERIET 142 (205)
T ss_pred hCCcE--EEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 65555 47777776644443 3467777433 22222 1122223332 3445555432234455778888888
Q ss_pred HhcCCchhHHHHHHHHHHHHHHH
Q 041323 409 VMDEAGKGQEMKAKAEKIGRQIR 431 (433)
Q Consensus 409 vl~~~~~~~~~~~~a~~l~~~~~ 431 (433)
++.+. -..+-+.+.+++..++
T Consensus 143 ~l~~~--~~~~~~~~~~~R~~~k 163 (205)
T TIGR01470 143 LLPPS--LGDLATLAATWRDAVK 163 (205)
T ss_pred hcchh--HHHHHHHHHHHHHHHH
Confidence 87543 1234455555555443
No 172
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.91 E-value=27 Score=32.74 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.2
Q ss_pred ceEEecCCchhHHHHHh------cCCceEecc
Q 041323 342 GAFLSYCGWNSALESLS------QGLPMIGWP 367 (433)
Q Consensus 342 ~~~ithgG~~s~~eal~------~GvP~i~~P 367 (433)
+++|+-||=||+..++. .++|++++-
T Consensus 37 Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 37 DIVISVGGDGTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred CEEEEECCcHHHHHHHHHhcccCCCCeEEEEe
Confidence 37999999999999976 488988874
No 173
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=54.90 E-value=42 Score=28.10 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=33.4
Q ss_pred HHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEc
Q 041323 246 IIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIR 293 (433)
Q Consensus 246 l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~ 293 (433)
+.+.++....+.+|++++||......+.++++++.+. .+.+++++.-
T Consensus 41 l~~~~~~~~~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 41 IRQLKDSGKLRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred HHHHHHcCCCCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 3333433334568999999998777888999998874 4678777654
No 174
>PRK14099 glycogen synthase; Provisional
Probab=54.19 E-value=20 Score=36.81 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=29.7
Q ss_pred CCCCCcEEEEeCC---CC---cccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 1 MGSENEHTVMLPL---MA---HGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 1 m~~~~~~il~~~~---~~---~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
|+ +|+|++++. |. -|=-.-.-.|.++|++ +||+|.++.|.
T Consensus 1 ~~--~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~-~g~~v~v~~P~ 46 (485)
T PRK14099 1 MT--PLRVLSVASEIFPLIKTGGLADVAGALPAALKA-HGVEVRTLVPG 46 (485)
T ss_pred CC--CcEEEEEEeccccccCCCcHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 64 689999873 21 1333456788999999 99999999873
No 175
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=54.08 E-value=1.2e+02 Score=25.86 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=20.6
Q ss_pred eEEecCCc------hhHHHHHhcCCceEecc
Q 041323 343 AFLSYCGW------NSALESLSQGLPMIGWP 367 (433)
Q Consensus 343 ~~ithgG~------~s~~eal~~GvP~i~~P 367 (433)
++++|+|- +.+.+|...++|+|++.
T Consensus 66 v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 66 VCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 57777773 47899999999999985
No 176
>PRK14098 glycogen synthase; Provisional
Probab=54.05 E-value=20 Score=36.84 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=31.4
Q ss_pred CCCCCcEEEEeCC---C---CcccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 1 MGSENEHTVMLPL---M---AHGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 1 m~~~~~~il~~~~---~---~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
|+.+.|+|++++. | +-|=-.-+-.|.++|++ +||+|.++.|.
T Consensus 1 ~~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~-~g~~v~v~~P~ 48 (489)
T PRK14098 1 MSRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEE-EGFEARIMMPK 48 (489)
T ss_pred CCCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHH-CCCeEEEEcCC
Confidence 5667799999873 1 11333456788999999 99999999873
No 177
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=53.75 E-value=2.7e+02 Score=28.69 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=57.6
Q ss_pred eEEecccChHH---hhccCCcceEEe--cCCchhH-HHHHhcCC----ceEecccccchhhHHHHHHHHhcceEEEccCC
Q 041323 324 LLVRNWAPQLE---ILSHKSTGAFLS--YCGWNSA-LESLSQGL----PMIGWPIAAEQTYNSKMLVEEMGMAVELTRGV 393 (433)
Q Consensus 324 v~~~~~~pq~~---il~~~~v~~~it--hgG~~s~-~eal~~Gv----P~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~ 393 (433)
+++.+.+|+.+ ++..++| ++|| .-|+|-+ .|.++++. |+|+= .+.-|. +. +.-|+.++.
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILS-----efaGaa--~~-l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLS-----EFAGAA--VE-LKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEe-----ccccch--hh-cCCCEEECC--
Confidence 45667888776 4556776 5665 4588855 49999877 44432 222222 33 456788865
Q ss_pred CCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 041323 394 QSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQI 430 (433)
Q Consensus 394 ~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~ 430 (433)
.+.++++++|.+.|+.+. . +-+++.+++.+.+
T Consensus 433 ---~d~~~~A~ai~~AL~m~~-~-Er~~R~~~l~~~v 464 (487)
T TIGR02398 433 ---YDPVRMDETIYVALAMPK-A-EQQARMREMFDAV 464 (487)
T ss_pred ---CCHHHHHHHHHHHHcCCH-H-HHHHHHHHHHHHH
Confidence 689999999999998772 1 2344444444443
No 178
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=53.39 E-value=95 Score=34.20 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=45.6
Q ss_pred ccChH---HhhccCCcceEEe--cCCch-hHHHHHhcCCc---eEecccccchhhHHHHHHHHhc-ceEEEccCCCCccc
Q 041323 329 WAPQL---EILSHKSTGAFLS--YCGWN-SALESLSQGLP---MIGWPIAAEQTYNSKMLVEEMG-MAVELTRGVQSTIV 398 (433)
Q Consensus 329 ~~pq~---~il~~~~v~~~it--hgG~~-s~~eal~~GvP---~i~~P~~~dQ~~na~~~~~~~G-~g~~l~~~~~~~~~ 398 (433)
++|.. .++..+++ ++++ +-|+| ++.|++++|+| +++++-+.- .+. . +| .|+.++. .+
T Consensus 363 ~v~~~el~aly~~ADv-fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G---~~~---~-l~~~allVnP-----~D 429 (797)
T PLN03063 363 SVDFNYLCALYAITDV-MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG---AGQ---S-LGAGALLVNP-----WN 429 (797)
T ss_pred CCCHHHHHHHHHhCCE-EEeCccccccCcchhhHheeecCCCCCEEeeCCcC---chh---h-hcCCeEEECC-----CC
Confidence 44544 46667776 3333 45776 77799999999 444443221 111 1 24 5788865 57
Q ss_pred HHHHHHHHHHHhc
Q 041323 399 GHDVKNVIEMVMD 411 (433)
Q Consensus 399 ~~~l~~ai~~vl~ 411 (433)
.++++++|.++|+
T Consensus 430 ~~~lA~AI~~aL~ 442 (797)
T PLN03063 430 ITEVSSAIKEALN 442 (797)
T ss_pred HHHHHHHHHHHHh
Confidence 8999999999998
No 179
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=53.24 E-value=32 Score=31.04 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=39.8
Q ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhh
Q 041323 4 ENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 4 ~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (433)
.+.+|++.+.++..|-....-++..|.. +|++|+++...-..+.+..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~-~G~~Vi~LG~~vp~e~~v~ 133 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSN-NGYEVIDLGVMVPIEKILE 133 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh-CCCEEEECCCCCCHHHHHH
Confidence 4679999999999999999999999999 9999999986555444433
No 180
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=52.93 E-value=7.9 Score=39.39 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=42.8
Q ss_pred ecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHH
Q 041323 346 SYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAK 422 (433)
Q Consensus 346 thgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~ 422 (433)
-|=|. ++.||+++|+|+++.=- -.-+.-+++ .-.|..++. +......+++++.++..|++....|.++
T Consensus 376 E~FGi-v~IEAMa~glPvvAt~~----GGP~EiV~~-~~tG~l~dp---~~e~~~~~a~~~~kl~~~p~l~~~~~~~ 443 (495)
T KOG0853|consen 376 EHFGI-VPIEAMACGLPVVATNN----GGPAEIVVH-GVTGLLIDP---GQEAVAELADALLKLRRDPELWARMGKN 443 (495)
T ss_pred CCccc-eeHHHHhcCCCEEEecC----CCceEEEEc-CCcceeeCC---chHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44444 67899999999997632 222333444 245777765 3333447999999999999433333333
No 181
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=52.80 E-value=1.5e+02 Score=25.36 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=14.4
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhCCCeEEEEE
Q 041323 262 SFGSQNTISSSQTMELAIGLEASAKSFLWVI 292 (433)
Q Consensus 262 s~GS~~~~~~~~~~~~~~al~~~~~~~l~~~ 292 (433)
-+||.+ +.+..+++...|++.|.++-..+
T Consensus 4 imGS~S--D~~~~~~a~~~L~~~gi~~dv~V 32 (156)
T TIGR01162 4 IMGSDS--DLPTMKKAADILEEFGIPYELRV 32 (156)
T ss_pred EECcHh--hHHHHHHHHHHHHHcCCCeEEEE
Confidence 344444 34445555555666555543333
No 182
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.39 E-value=2.2e+02 Score=27.35 Aligned_cols=88 Identities=14% Similarity=0.102 Sum_probs=56.5
Q ss_pred CCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCc--hhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCCC----CC
Q 041323 13 LMAHGHLIPFLALAKQIHRSTGFKITIANTPLN--IQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPNT----EN 86 (433)
Q Consensus 13 ~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~~----~~ 86 (433)
.+-.-|+.-|..|-++|.+ +||+|.+-+-... .+.+.. .|+.+..+.-. +...-. +.
T Consensus 7 I~n~~hvhfFk~lI~elek-kG~ev~iT~rd~~~v~~LLd~------------ygf~~~~Igk~----g~~tl~~Kl~~~ 69 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEK-KGHEVLITCRDFGVVTELLDL------------YGFPYKSIGKH----GGVTLKEKLLES 69 (346)
T ss_pred cCCcchhhHHHHHHHHHHh-CCeEEEEEEeecCcHHHHHHH------------hCCCeEeeccc----CCccHHHHHHHH
Confidence 3445688889999999999 9999988763322 233443 67777776521 101000 00
Q ss_pred --------------CccEEEEcCCcccHHHHHHHhCCceEEEecch
Q 041323 87 --------------RELVFGSSTFFGWAVDVAKSAGTTNVTFITGG 118 (433)
Q Consensus 87 --------------~~~~vv~d~~~~~a~~vA~~lgiP~v~~~~~~ 118 (433)
..++.+. .+.+.+..+|--+|+|.+.|.=.+
T Consensus 70 ~eR~~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 70 AERVYKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHHHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 0115555 667888899999999999985443
No 183
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=52.38 E-value=20 Score=36.50 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=27.3
Q ss_pred cEEEEeCC---C---CcccHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 041323 6 EHTVMLPL---M---AHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (433)
Q Consensus 6 ~~il~~~~---~---~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (433)
|||+++++ | +-|=-.-.-.|+++|++ +||+|.++++..
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~-~G~~v~v~~p~y 44 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAA-LGHDVRVLLPAY 44 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHH-cCCeEEEEecCC
Confidence 57888773 2 12333445789999999 999999998643
No 184
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=51.10 E-value=32 Score=30.59 Aligned_cols=43 Identities=7% Similarity=-0.105 Sum_probs=32.1
Q ss_pred CcEEEEeCCCCcccHHH-HHHHHHHHHhcCCcEEEEEeCCCchhhh
Q 041323 5 NEHTVMLPLMAHGHLIP-FLALAKQIHRSTGFKITIANTPLNIQYL 49 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P-~l~LA~~L~~~rGh~Vt~~~~~~~~~~~ 49 (433)
+.+|++--.|+.| .+- .+.|+++|.+ +||+|.++.++...+.+
T Consensus 5 ~k~IllgVTGsia-a~k~a~~lir~L~k-~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 5 GKRIGFGLTGSHC-TYDEVMPEIEKLVD-EGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCEEEEEEcCHHH-HHHHHHHHHHHHHh-CcCEEEEEECHhHHHHh
Confidence 4477666665444 555 6999999999 99999999887665443
No 185
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=50.81 E-value=34 Score=32.34 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecC
Q 041323 269 ISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYC 348 (433)
Q Consensus 269 ~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithg 348 (433)
.+.+..+++.+++.+...+.||.++++. + -..+.++++...+-++|. .||=+.
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~---------------g----------a~rlL~~ld~~~~~~~pK--~~iGyS 98 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGY---------------G----------ANRLLPYLDYDLIRANPK--IFVGYS 98 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcC---------------C----------HHHhhhhCCHHHHhhCCe--EEEEec
Confidence 3456788899999999999999998752 0 111336666666667777 488888
Q ss_pred CchhHHHHHhc--CCceEeccccc
Q 041323 349 GWNSALESLSQ--GLPMIGWPIAA 370 (433)
Q Consensus 349 G~~s~~eal~~--GvP~i~~P~~~ 370 (433)
-..+++-+++. |++.+--|...
T Consensus 99 DiTaL~~~l~~~~g~~t~hGp~~~ 122 (282)
T cd07025 99 DITALHLALYAKTGLVTFHGPMLA 122 (282)
T ss_pred HHHHHHHHHHHhcCceEEECcccc
Confidence 88888877654 77777777543
No 186
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=50.32 E-value=1.6e+02 Score=25.04 Aligned_cols=139 Identities=17% Similarity=0.192 Sum_probs=71.7
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhh-hcCCCeEEecccChHHhh
Q 041323 258 VLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIE-ETKQGLLVRNWAPQLEIL 336 (433)
Q Consensus 258 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~pq~~il 336 (433)
.|-|-+||.+ +-+..++.++.|++.|+.+-..+-+.+ ..|+.+.+-.+ ...+++.
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAH-----------RTPe~m~~ya~~a~~~g~~----------- 59 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAH-----------RTPEKMFEYAEEAEERGVK----------- 59 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEecc-----------CCHHHHHHHHHHHHHCCCe-----------
Confidence 4777889987 556677788888888887755444332 24544332221 0133333
Q ss_pred ccCCcceEEecCCch---hHHHHHhcCCceEecccccc---hhhHHHHHHHHhcceEEEccC-CCCcccHHHHHHHHHHH
Q 041323 337 SHKSTGAFLSYCGWN---SALESLSQGLPMIGWPIAAE---QTYNSKMLVEEMGMAVELTRG-VQSTIVGHDVKNVIEMV 409 (433)
Q Consensus 337 ~~~~v~~~ithgG~~---s~~eal~~GvP~i~~P~~~d---Q~~na~~~~~~~G~g~~l~~~-~~~~~~~~~l~~ai~~v 409 (433)
.+|.-.|.- .=+-|...=+|+|++|.... -.+---.++. +--|+-+-.- -.+-.++.-++..|..+
T Consensus 60 ------viIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQ-MP~GvPVaTvaIg~a~NAallAa~ILa~ 132 (162)
T COG0041 60 ------VIIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQ-MPAGVPVATVAIGNAANAALLAAQILAI 132 (162)
T ss_pred ------EEEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhc-CCCCCeeEEEeecchhhHHHHHHHHHcC
Confidence 366655531 11123445789999998632 2222223343 3444433220 00223444444444322
Q ss_pred hcCCchhHHHHHHHHHHHHHHHc
Q 041323 410 MDEAGKGQEMKAKAEKIGRQIRH 432 (433)
Q Consensus 410 l~~~~~~~~~~~~a~~l~~~~~~ 432 (433)
.|+ .++++..++++..++
T Consensus 133 -~d~----~l~~kl~~~r~~~~~ 150 (162)
T COG0041 133 -KDP----ELAEKLAEFREAQTE 150 (162)
T ss_pred -CCH----HHHHHHHHHHHHHHH
Confidence 445 577777777766543
No 187
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=50.01 E-value=35 Score=27.63 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=36.0
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhh
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYL 49 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~ 49 (433)
||++.+.++..|-.-..-++.-|.. .|++|.+.......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~-~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRD-AGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHH-CCCEEEECCCCCCHHHH
Confidence 6899999999999999999999999 99999999865544433
No 188
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=49.59 E-value=58 Score=29.66 Aligned_cols=97 Identities=11% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCcEEEEEeCCCC---CCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhh-hcC-CCeEEecc
Q 041323 255 PGSVLYISFGSQN---TISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIE-ETK-QGLLVRNW 329 (433)
Q Consensus 255 ~~~vv~vs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~~ 329 (433)
+++.|.+..|+.. ..+.+.+.++++.|.+.++++++..+.. +. -+...+.+. ... ..+.+.+-
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~-------~~-----~~~~~~~~~~~~~~~~~~~~~~ 171 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE-------EQ-----EKEIADQIAAGLQNPVINLAGK 171 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH-------HH-----HHHHHHHHHTTHTTTTEEETTT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch-------HH-----HHHHHHHHHHhcccceEeecCC
Confidence 3457777777765 3567889999999998887765543321 10 011111111 001 13333333
Q ss_pred cC--h-HHhhccCCcceEEecCCchhHHHHHhcCCceEec
Q 041323 330 AP--Q-LEILSHKSTGAFLSYCGWNSALESLSQGLPMIGW 366 (433)
Q Consensus 330 ~p--q-~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~ 366 (433)
.+ + ..++.+++ ++|+. ..|.++=|.+.|+|+|++
T Consensus 172 ~~l~e~~ali~~a~--~~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 172 TSLRELAALISRAD--LVIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp S-HHHHHHHHHTSS--EEEEE-SSHHHHHHHHTT--EEEE
T ss_pred CCHHHHHHHHhcCC--EEEec-CChHHHHHHHHhCCEEEE
Confidence 32 2 35778888 47775 467788899999999988
No 189
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=49.24 E-value=21 Score=31.39 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=22.0
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeC
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~ 42 (433)
+|.++. +.|++- -.++++..+ |||+||-++-
T Consensus 2 KIaiIg--AsG~~G--s~i~~EA~~-RGHeVTAivR 32 (211)
T COG2910 2 KIAIIG--ASGKAG--SRILKEALK-RGHEVTAIVR 32 (211)
T ss_pred eEEEEe--cCchhH--HHHHHHHHh-CCCeeEEEEe
Confidence 455543 444443 268899999 9999999984
No 190
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=49.05 E-value=25 Score=35.83 Aligned_cols=73 Identities=16% Similarity=0.054 Sum_probs=46.8
Q ss_pred EecccChHH---hhccCCcceEEe---cCCc-hhHHHHHhcCCc----eEecccccchhhHHHHHHHHhcceEEEccCCC
Q 041323 326 VRNWAPQLE---ILSHKSTGAFLS---YCGW-NSALESLSQGLP----MIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQ 394 (433)
Q Consensus 326 ~~~~~pq~~---il~~~~v~~~it---hgG~-~s~~eal~~GvP----~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~ 394 (433)
+.+++++.+ ++..+++ ||. +-|+ .++.||+++|+| +|+--..+- .+. ..-|+.++.
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~-------~~~-~~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA-------AEE-LSGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc-------hhh-cCCCEEECC---
Confidence 346777665 4667775 542 4455 477899999999 544322211 111 134677754
Q ss_pred CcccHHHHHHHHHHHhcCC
Q 041323 395 STIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 395 ~~~~~~~l~~ai~~vl~~~ 413 (433)
.+.++++++|.++++++
T Consensus 412 --~d~~~la~ai~~~l~~~ 428 (460)
T cd03788 412 --YDIDEVADAIHRALTMP 428 (460)
T ss_pred --CCHHHHHHHHHHHHcCC
Confidence 46899999999999865
No 191
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=48.63 E-value=63 Score=24.39 Aligned_cols=27 Identities=26% Similarity=0.572 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCchhhhhh
Q 041323 22 FLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 22 ~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (433)
++.+|+.|++ .|+++ ++| +.....++.
T Consensus 2 ~~~~~~~l~~-lG~~i-~AT-~gTa~~L~~ 28 (90)
T smart00851 2 LVELAKRLAE-LGFEL-VAT-GGTAKFLRE 28 (90)
T ss_pred HHHHHHHHHH-CCCEE-EEc-cHHHHHHHH
Confidence 5789999999 99998 454 456667776
No 192
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=48.33 E-value=1.4e+02 Score=28.60 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=38.7
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhc-CCcEEEEEeCCCchhhhhh
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~~~~ 51 (433)
|||++-..+-||+.=...+.+.|++. .+.++++++.+.+...++.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 46 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLER 46 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhc
Confidence 58999999999999999999999994 3999999998776666654
No 193
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=47.03 E-value=41 Score=28.79 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=27.0
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEE
Q 041323 258 VLYISFGSQNTISSSQTMELAIGLEASAKSFLWVI 292 (433)
Q Consensus 258 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~ 292 (433)
.+|+++||....+...++..+++|.+.+.--++.+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 59999999988777788999999988764334443
No 194
>PLN02470 acetolactate synthase
Probab=46.24 E-value=1.8e+02 Score=30.60 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=23.0
Q ss_pred CcceEEecCCc------hhHHHHHhcCCceEecc
Q 041323 340 STGAFLSYCGW------NSALESLSQGLPMIGWP 367 (433)
Q Consensus 340 ~v~~~ithgG~------~s~~eal~~GvP~i~~P 367 (433)
.++++++|.|- +.+.+|...++|+|++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 45568888884 48899999999999985
No 195
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=46.18 E-value=1.1e+02 Score=27.31 Aligned_cols=144 Identities=10% Similarity=0.063 Sum_probs=71.7
Q ss_pred CcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHh
Q 041323 256 GSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEI 335 (433)
Q Consensus 256 ~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~i 335 (433)
+.++.|..|.++ ...++.|.+.|..+.++.. . +.+.+..... ...+.......+..-
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~-------------~~~~l~~l~~--~~~i~~~~~~~~~~~ 67 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-E-------------LTENLVKLVE--EGKIRWKQKEFEPSD 67 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-C-------------CCHHHHHHHh--CCCEEEEecCCChhh
Confidence 447777666554 4455666667777665532 1 1122222111 123333333333444
Q ss_pred hccCCcceEEecCCchhHHHHHh----cCCceEecccccchhhHH-----HHHHHHhcceEEEccCCCCcccHHHHHHHH
Q 041323 336 LSHKSTGAFLSYCGWNSALESLS----QGLPMIGWPIAAEQTYNS-----KMLVEEMGMAVELTRGVQSTIVGHDVKNVI 406 (433)
Q Consensus 336 l~~~~v~~~ithgG~~s~~eal~----~GvP~i~~P~~~dQ~~na-----~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai 406 (433)
+..++ ++|.--+--.+.+.++ .++++-+ .|.+..+ ..+.+. ++-+.+..+.....-+..|++.|
T Consensus 68 l~~ad--lViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~i 140 (202)
T PRK06718 68 IVDAF--LVIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDEL 140 (202)
T ss_pred cCCce--EEEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHH
Confidence 66666 4777767666666554 3454433 2433322 223332 44455544322344456777778
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHHH
Q 041323 407 EMVMDEAGKGQEMKAKAEKIGRQIR 431 (433)
Q Consensus 407 ~~vl~~~~~~~~~~~~a~~l~~~~~ 431 (433)
.+++.. +-..+-+.+.++++.++
T Consensus 141 e~~~~~--~~~~~~~~~~~~R~~~k 163 (202)
T PRK06718 141 EALYDE--SYESYIDFLYECRQKIK 163 (202)
T ss_pred HHHcch--hHHHHHHHHHHHHHHHH
Confidence 777633 22345555555555554
No 196
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=46.18 E-value=28 Score=33.94 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=58.4
Q ss_pred CcEEEEEeCCCC---CCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecc--c
Q 041323 256 GSVLYISFGSQN---TISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNW--A 330 (433)
Q Consensus 256 ~~vv~vs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~ 330 (433)
++.|.+..|+.. ..+.+.+.++++.|.+.+.++++.-+.. +.+. ..-+.+.+... .+..+...+- +
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~-------e~e~-~~~~~i~~~~~-~~~~~~l~g~~sL 253 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPD-------KDDL-ACVNEIAQGCQ-TPPVTALAGKTTF 253 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCC-------hHHH-HHHHHHHHhcC-CCccccccCCCCH
Confidence 457778888754 3567889999999988788877654432 1000 00011111111 0111222233 2
Q ss_pred ChH-HhhccCCcceEEecCCchhHHHHHhcCCceEec
Q 041323 331 PQL-EILSHKSTGAFLSYCGWNSALESLSQGLPMIGW 366 (433)
Q Consensus 331 pq~-~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~ 366 (433)
.+. .++++++ +||++ -.|-++=|.+.|+|+|++
T Consensus 254 ~el~ali~~a~--l~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 254 PELGALIDHAQ--LFIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHHHHHHHhCC--EEEec-CCHHHHHHHHcCCCEEEE
Confidence 333 4778888 58876 567788889999999965
No 197
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=46.04 E-value=39 Score=29.36 Aligned_cols=70 Identities=13% Similarity=0.232 Sum_probs=40.4
Q ss_pred ccCCcceEEecCCchhHHHHHhcCCceEeccccc-c----------------------hhhHHHHHHHHhcceEEEccCC
Q 041323 337 SHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAA-E----------------------QTYNSKMLVEEMGMAVELTRGV 393 (433)
Q Consensus 337 ~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~-d----------------------Q~~na~~~~~~~G~g~~l~~~~ 393 (433)
.+..++.+|++||...+..... ++|+|-+|..+ | ...++..+.+.+|+-+....
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~-- 107 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYP-- 107 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEE--
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEE--
Confidence 4455667999999888888776 99999999753 1 22235555555455444432
Q ss_pred CCcccHHHHHHHHHHHhc
Q 041323 394 QSTIVGHDVKNVIEMVMD 411 (433)
Q Consensus 394 ~~~~~~~~l~~ai~~vl~ 411 (433)
.-+.+++..+|.++..
T Consensus 108 --~~~~~e~~~~i~~~~~ 123 (176)
T PF06506_consen 108 --YDSEEEIEAAIKQAKA 123 (176)
T ss_dssp --ESSHHHHHHHHHHHHH
T ss_pred --ECCHHHHHHHHHHHHH
Confidence 2356777777777654
No 198
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.53 E-value=1.1e+02 Score=31.48 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=26.7
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
..+|+|+-.+..| +.+|+.|++ +|++|+..-..
T Consensus 7 ~~~i~v~G~G~sG-----~s~a~~L~~-~G~~v~~~D~~ 39 (498)
T PRK02006 7 GPMVLVLGLGESG-----LAMARWCAR-HGARLRVADTR 39 (498)
T ss_pred CCEEEEEeecHhH-----HHHHHHHHH-CCCEEEEEcCC
Confidence 3479999888877 459999999 99999887543
No 199
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=45.06 E-value=3e+02 Score=29.06 Aligned_cols=34 Identities=12% Similarity=-0.003 Sum_probs=24.3
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (433)
.+|+++-.+ +--..|+.+.++ .|++|.++.....
T Consensus 23 k~IgIIGgG-----qlg~mla~aA~~-lG~~Vi~ld~~~~ 56 (577)
T PLN02948 23 TVVGVLGGG-----QLGRMLCQAASQ-MGIKVKVLDPLED 56 (577)
T ss_pred CEEEEECCC-----HHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 477777665 334566777788 9999999976543
No 200
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=44.88 E-value=30 Score=30.21 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=32.8
Q ss_pred CCCeEEecccChH---H-hhccCCcceEEecCC----chhHHHHHhcCCceEeccccc
Q 041323 321 KQGLLVRNWAPQL---E-ILSHKSTGAFLSYCG----WNSALESLSQGLPMIGWPIAA 370 (433)
Q Consensus 321 ~~~v~~~~~~pq~---~-il~~~~v~~~ithgG----~~s~~eal~~GvP~i~~P~~~ 370 (433)
..++.+.++++.. . ++..+++ +|+-.. .+++.||+++|+|+|+-+...
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 4567777776322 2 3333664 666555 689999999999999887654
No 201
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=44.84 E-value=46 Score=32.23 Aligned_cols=20 Identities=20% Similarity=0.004 Sum_probs=15.2
Q ss_pred ccHHHHHHHhCCceEEEecc
Q 041323 98 GWAVDVAKSAGTTNVTFITG 117 (433)
Q Consensus 98 ~~a~~vA~~lgiP~v~~~~~ 117 (433)
.....+|+.+|||+++..+.
T Consensus 239 ~~lAl~Ak~~~VPfyV~a~~ 258 (329)
T PRK06371 239 YEKAVLAKVNGIPFYVAAPG 258 (329)
T ss_pred HHHHHHHHHcCCCEEEeccc
Confidence 34456789999999998654
No 202
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=44.36 E-value=45 Score=27.97 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=36.2
Q ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCch
Q 041323 4 ENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (433)
Q Consensus 4 ~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~ 46 (433)
.++||++.+.+..||=.=.--+++.|++ .|++|.....-..-
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d-~GfeVi~~g~~~tp 52 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALAD-AGFEVINLGLFQTP 52 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHh-CCceEEecCCcCCH
Confidence 4789999999999999989999999999 99999987644433
No 203
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=44.36 E-value=96 Score=30.08 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=40.6
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhc-CCcEEEEEeCCCchhhhhh
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~~~~ 51 (433)
||||++-..+-||+.=...+.+.|+++ .+.++++++.+.+...++.
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 47 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSR 47 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhc
Confidence 579999999999999999999999994 3999999998877776665
No 204
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=44.27 E-value=45 Score=32.01 Aligned_cols=74 Identities=11% Similarity=0.018 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCC
Q 041323 270 SSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCG 349 (433)
Q Consensus 270 ~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG 349 (433)
+.+...++.+++.+..++.||.++++. .-..+.++++...+-.||+ .||=..-
T Consensus 51 ~~~Ra~dL~~a~~Dp~i~aI~~~rGG~-------------------------g~~rlL~~lD~~~i~~~PK--~fiGySD 103 (308)
T cd07062 51 PEERAEELMAAFADPSIKAIIPTIGGD-------------------------DSNELLPYLDYELIKKNPK--IFIGYSD 103 (308)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCccc-------------------------CHhhhhhhcCHHHHhhCCC--EEEeccH
Confidence 456788899999999999999988752 0112346677777777777 4888888
Q ss_pred chhHHHHHh--cCCceEeccccc
Q 041323 350 WNSALESLS--QGLPMIGWPIAA 370 (433)
Q Consensus 350 ~~s~~eal~--~GvP~i~~P~~~ 370 (433)
..+++-+++ +|++.+--|...
T Consensus 104 iTaL~~al~~~~g~~t~hGp~~~ 126 (308)
T cd07062 104 ITALHLAIYKKTGLVTYYGPNLL 126 (308)
T ss_pred HHHHHHHHHHhcCCeEEECcccc
Confidence 888888874 478777777653
No 205
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.01 E-value=46 Score=31.58 Aligned_cols=52 Identities=8% Similarity=0.098 Sum_probs=34.3
Q ss_pred ceEEecCCchhHHHHHh----cCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC
Q 041323 342 GAFLSYCGWNSALESLS----QGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 342 ~~~ithgG~~s~~eal~----~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
+++|+-||=||++.++. .++|++++-.. .+|.. ..++.+++.++++++++++
T Consensus 66 Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL------t~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 66 DFLISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGFL------TDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CEEEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------CcccC------CcCCHHHHHHHHHHHHcCC
Confidence 37999999999998865 37788877321 12222 2345677777777776543
No 206
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=42.39 E-value=40 Score=32.27 Aligned_cols=22 Identities=9% Similarity=-0.244 Sum_probs=16.2
Q ss_pred ccHHHHHHHhCCceEEEecchH
Q 041323 98 GWAVDVAKSAGTTNVTFITGGA 119 (433)
Q Consensus 98 ~~a~~vA~~lgiP~v~~~~~~~ 119 (433)
.....+|+.+|+|+++...+.-
T Consensus 221 ~~lA~~Ak~~~vPv~V~a~s~K 242 (303)
T TIGR00524 221 YQLAVLAKEFRIPFFVAAPLST 242 (303)
T ss_pred HHHHHHHHHhCCCEEEeccccc
Confidence 3445678999999999866543
No 207
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=42.24 E-value=23 Score=31.25 Aligned_cols=95 Identities=17% Similarity=0.232 Sum_probs=46.8
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcC--CcEEEEEeC-CCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCC
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRST--GFKITIANT-PLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPN 83 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~r--Gh~Vt~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~ 83 (433)
..+-+-..+.|-++-...|+++|.+ + |++|.+-++ +...+.+.+... ..+....+|.+ ++..
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~-~~p~~~illT~~T~tg~~~~~~~~~---------~~v~~~~~P~D-----~~~~ 86 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRK-QRPDLRILLTTTTPTGREMARKLLP---------DRVDVQYLPLD-----FPWA 86 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT----TS-EEEEES-CCHHHHHHGG-G---------GG-SEEE---S-----SHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHH-hCCCCeEEEEecCCchHHHHHHhCC---------CCeEEEEeCcc-----CHHH
Confidence 4445556688999999999999999 7 899888775 344444544322 23444445532 2221
Q ss_pred CCC------CccEEEEcC-CcccHHHHHHHhCCceEEEec
Q 041323 84 TEN------RELVFGSST-FFGWAVDVAKSAGTTNVTFIT 116 (433)
Q Consensus 84 ~~~------~~~~vv~d~-~~~~a~~vA~~lgiP~v~~~~ 116 (433)
... .+.+|+.+. +.+.....|++.|||.+.+..
T Consensus 87 ~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 87 VRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp HHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred HHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 111 111566554 344556678889999998743
No 208
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=42.03 E-value=1.6e+02 Score=29.83 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=30.7
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (433)
+++|+++-.+-.| +..|+.|++ +|++|++.-....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~-~G~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLK-LGAEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHH-CCCeEEEEcCCCC
Confidence 5799999999999 899999999 9999999875444
No 209
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=41.70 E-value=1.4e+02 Score=24.73 Aligned_cols=62 Identities=15% Similarity=0.298 Sum_probs=47.1
Q ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCc--hhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCC
Q 041323 4 ENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN--IQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLP 81 (433)
Q Consensus 4 ~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~ 81 (433)
++||+|+.--|+-.-++-++ .+|.+ .|..-.+-+.+.. ...++. .||+...++|+ |+.+
T Consensus 15 ~~MrFLIThnPtnaTln~fi---eELkK-ygvttvVRVCe~TYdt~~lek------------~GI~Vldw~f~---dg~p 75 (173)
T KOG2836|consen 15 KNMRFLITHNPTNATLNKFI---EELKK-YGVTTVVRVCEPTYDTTPLEK------------EGITVLDWPFD---DGAP 75 (173)
T ss_pred cceEEEEecCCCchhHHHHH---HHHHh-cCCeEEEEecccccCCchhhh------------cCceEeecccc---cCCC
Confidence 57999999999998888776 68999 9987655443333 345666 89999999987 7766
Q ss_pred CCC
Q 041323 82 PNT 84 (433)
Q Consensus 82 ~~~ 84 (433)
+..
T Consensus 76 pp~ 78 (173)
T KOG2836|consen 76 PPN 78 (173)
T ss_pred Cch
Confidence 554
No 210
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.56 E-value=47 Score=31.83 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=35.7
Q ss_pred cceEEecCCchhHHHHHhc----CCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC
Q 041323 341 TGAFLSYCGWNSALESLSQ----GLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 341 v~~~ithgG~~s~~eal~~----GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
++++|+=||=||++.++.. ++|++++-.. .+|..- .++.+++.++|.++++++
T Consensus 69 ~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFLt------~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 69 MKFAIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFLT------EAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred cCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcccc------cCCHHHHHHHHHHHHcCC
Confidence 3479999999999999774 7898887320 122222 235677777777777554
No 211
>PLN02316 synthase/transferase
Probab=41.55 E-value=45 Score=37.49 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=29.4
Q ss_pred CCcEEEEeCC---CC--cccHH-HHHHHHHHHHhcCCcEEEEEeCCC
Q 041323 4 ENEHTVMLPL---MA--HGHLI-PFLALAKQIHRSTGFKITIANTPL 44 (433)
Q Consensus 4 ~~~~il~~~~---~~--~GHv~-P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (433)
++|||++++. |. .|-+. -.-.|+++|++ +||+|.++++..
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~-~Gh~V~VitP~Y 631 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQD-LNHNVDIILPKY 631 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHH-cCCEEEEEecCC
Confidence 4589999873 21 23333 34689999999 999999999754
No 212
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=41.50 E-value=28 Score=30.69 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=25.2
Q ss_pred EEEEeCCCCcccHHH------------HHHHHHHHHhcCCcEEEEEeCCC
Q 041323 7 HTVMLPLMAHGHLIP------------FLALAKQIHRSTGFKITIANTPL 44 (433)
Q Consensus 7 ~il~~~~~~~GHv~P------------~l~LA~~L~~~rGh~Vt~~~~~~ 44 (433)
+|++...|+.=++.| -..||+++.. ||++|+++..+.
T Consensus 5 ~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~-~Ga~V~li~g~~ 53 (185)
T PF04127_consen 5 KVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAAR-RGAEVTLIHGPS 53 (185)
T ss_dssp EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHH-TT-EEEEEE-TT
T ss_pred EEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHH-CCCEEEEEecCc
Confidence 566655555555544 2689999999 999999999774
No 213
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=41.18 E-value=51 Score=32.20 Aligned_cols=21 Identities=14% Similarity=-0.129 Sum_probs=15.5
Q ss_pred ccHHHHHHHhCCceEEEecch
Q 041323 98 GWAVDVAKSAGTTNVTFITGG 118 (433)
Q Consensus 98 ~~a~~vA~~lgiP~v~~~~~~ 118 (433)
.....+|+.+++|+++..++.
T Consensus 249 ~~lAl~Ak~~~vPfyV~a~~~ 269 (344)
T PRK05720 249 YQLAIAAKYHGVPFYVAAPSS 269 (344)
T ss_pred HHHHHHHHHhCCCEEEecccc
Confidence 345567899999999875553
No 214
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=40.68 E-value=44 Score=29.35 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=34.3
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhh
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (433)
||++.-.++.|=+. ...+.+.|.+ +|++|.++.++.-.+.+..
T Consensus 3 ~Ill~vtGsiaa~~-~~~li~~L~~-~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 3 NILLAVSGSIAAYK-AADLTSQLTK-RGYQVTVLMTKAATKFITP 45 (182)
T ss_pred EEEEEEeChHHHHH-HHHHHHHHHH-CCCEEEEEEChhHHHHcCH
Confidence 77777777666655 8999999999 9999999988776665543
No 215
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=40.54 E-value=40 Score=31.34 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=39.9
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhh
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNT 52 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~ 52 (433)
-++|+-.|+.|-..=..++|.+|.+ +|+.|+|++.++....+...
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLK-AGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEEHHHHHHHHHHH
Confidence 6788888898998899999999999 99999999998888777763
No 216
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=40.50 E-value=62 Score=31.68 Aligned_cols=19 Identities=21% Similarity=0.008 Sum_probs=14.5
Q ss_pred ccHHHHHHHhCCceEEEec
Q 041323 98 GWAVDVAKSAGTTNVTFIT 116 (433)
Q Consensus 98 ~~a~~vA~~lgiP~v~~~~ 116 (433)
.....+|+.+|||+++..+
T Consensus 262 y~lA~~Ak~~~vPfyV~Ap 280 (356)
T PRK08334 262 YTLAVLAKEHGIPFFTVAP 280 (356)
T ss_pred HHHHHHHHHhCCCEEEEcc
Confidence 3445678999999999764
No 217
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=40.23 E-value=47 Score=21.68 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 041323 398 VGHDVKNVIEMVMDEAGKGQEMKAKAEKI 426 (433)
Q Consensus 398 ~~~~l~~ai~~vl~~~~~~~~~~~~a~~l 426 (433)
++++|..||..+.++. .++++.|++.
T Consensus 1 tee~l~~Ai~~v~~g~---~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK---MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS---S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC---CCHHHHHHHH
Confidence 4789999999998762 2788888765
No 218
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=39.94 E-value=54 Score=31.81 Aligned_cols=21 Identities=14% Similarity=-0.084 Sum_probs=15.6
Q ss_pred ccHHHHHHHhCCceEEEecch
Q 041323 98 GWAVDVAKSAGTTNVTFITGG 118 (433)
Q Consensus 98 ~~a~~vA~~lgiP~v~~~~~~ 118 (433)
.....+|+.+|+|+++..++.
T Consensus 249 ~~lA~~Ak~~~vPfyV~a~~~ 269 (331)
T TIGR00512 249 YQLAVLAKHHGVPFYVAAPTS 269 (331)
T ss_pred HHHHHHHHHhCCCEEEecccc
Confidence 344567899999999876654
No 219
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=39.23 E-value=80 Score=29.77 Aligned_cols=22 Identities=5% Similarity=-0.263 Sum_probs=15.9
Q ss_pred cccHHHHHHHhCCceEEEecch
Q 041323 97 FGWAVDVAKSAGTTNVTFITGG 118 (433)
Q Consensus 97 ~~~a~~vA~~lgiP~v~~~~~~ 118 (433)
+.....+|+.+|+|+++..++.
T Consensus 200 T~~lA~~Ak~~~vPfyV~a~~~ 221 (275)
T PRK08335 200 TYLLALACHDNGVPFYVAAETF 221 (275)
T ss_pred HHHHHHHHHHcCCCEEEECccc
Confidence 3444567899999999975543
No 220
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=39.10 E-value=48 Score=30.76 Aligned_cols=92 Identities=11% Similarity=0.114 Sum_probs=48.6
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCCCC
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPNTE 85 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~~~ 85 (433)
|||+++..-+.|+ .||+.|.+ +|+ |.+-+.-++......... .......-.+. ..+++..-+.
T Consensus 1 m~ILvlgGTtE~r-----~la~~L~~-~g~-v~~sv~t~~g~~~~~~~~---------~~~~v~~G~lg-~~~~l~~~l~ 63 (249)
T PF02571_consen 1 MKILVLGGTTEGR-----KLAERLAE-AGY-VIVSVATSYGGELLKPEL---------PGLEVRVGRLG-DEEGLAEFLR 63 (249)
T ss_pred CEEEEEechHHHH-----HHHHHHHh-cCC-EEEEEEhhhhHhhhcccc---------CCceEEECCCC-CHHHHHHHHH
Confidence 5788877666665 79999999 998 665544444444332100 22233322210 0011111111
Q ss_pred CCccEEEEcCCcccH-------HHHHHHhCCceEEE
Q 041323 86 NRELVFGSSTFFGWA-------VDVAKSAGTTNVTF 114 (433)
Q Consensus 86 ~~~~~vv~d~~~~~a-------~~vA~~lgiP~v~~ 114 (433)
...--.|.|..-++| ..+|+++|||++-|
T Consensus 64 ~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 64 ENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred hCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 111145666655544 34688899999987
No 221
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=38.75 E-value=2.7e+02 Score=24.36 Aligned_cols=54 Identities=22% Similarity=0.163 Sum_probs=33.6
Q ss_pred Hhc--CCceEecccc----cch---hhHHHHHHHHhcceEEEcc---------CCCCcccHHHHHHHHHHHhc
Q 041323 357 LSQ--GLPMIGWPIA----AEQ---TYNSKMLVEEMGMAVELTR---------GVQSTIVGHDVKNVIEMVMD 411 (433)
Q Consensus 357 l~~--GvP~i~~P~~----~dQ---~~na~~~~~~~G~g~~l~~---------~~~~~~~~~~l~~ai~~vl~ 411 (433)
++. ++|++++|-. ... ..|..++.+ +|+=+.-.. +..+-.+.++|.+.+.+.+.
T Consensus 108 ~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 108 LALPATTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred HHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 445 8999999952 232 457778887 476544433 01234566777777776654
No 222
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=38.67 E-value=1.6e+02 Score=27.98 Aligned_cols=94 Identities=10% Similarity=-0.061 Sum_probs=52.8
Q ss_pred chhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCC
Q 041323 243 PEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQ 322 (433)
Q Consensus 243 ~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (433)
..|+..+..+..-.++-+-........+...+..+.+++++.|.++++=+|... ....+..
T Consensus 115 ~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~--------~~~~~~~----------- 175 (293)
T COG2159 115 AEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGP--------GGAGLEK----------- 175 (293)
T ss_pred HHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCC--------CCccccc-----------
Confidence 346677766543332333233333344455588899999999999999777542 0000000
Q ss_pred CeEEecccChHHhhccCCcceEEecCC--chhHHHH
Q 041323 323 GLLVRNWAPQLEILSHKSTGAFLSYCG--WNSALES 356 (433)
Q Consensus 323 ~v~~~~~~pq~~il~~~~v~~~ithgG--~~s~~ea 356 (433)
. ...+..=..-....|+++.++.|+| ..=..|+
T Consensus 176 ~-~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 176 G-HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred C-CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 0 0001111223456789999999999 5555555
No 223
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=38.55 E-value=51 Score=33.67 Aligned_cols=53 Identities=15% Similarity=0.334 Sum_probs=0.0
Q ss_pred CCcEEEEeCCCCcccHHHH------------HHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEc
Q 041323 4 ENEHTVMLPLMAHGHLIPF------------LALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVEL 71 (433)
Q Consensus 4 ~~~~il~~~~~~~GHv~P~------------l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l 71 (433)
...||++...|+.=.+.|. .+||+++.. ||++||+++.+.... .+ .+++++.+
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~-~GA~VtlI~Gp~~~~--~p------------~~v~~i~V 319 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAA-AGAEVTLISGPVDLA--DP------------QGVKVIHV 319 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHH-CCCcEEEEeCCcCCC--CC------------CCceEEEe
No 224
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=38.19 E-value=1.6e+02 Score=25.60 Aligned_cols=27 Identities=7% Similarity=0.051 Sum_probs=19.2
Q ss_pred EEEEcCCcccHHHHHHHh-CCceEEEec
Q 041323 90 VFGSSTFFGWAVDVAKSA-GTTNVTFIT 116 (433)
Q Consensus 90 ~vv~d~~~~~a~~vA~~l-giP~v~~~~ 116 (433)
+|+.+.-...++.+-+.+ ++|.+.+.=
T Consensus 69 vI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 69 VIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred EEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 788777666666677777 778777643
No 225
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=38.19 E-value=38 Score=30.93 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCcEEEEEeC
Q 041323 23 LALAKQIHRSTGFKITIANT 42 (433)
Q Consensus 23 l~LA~~L~~~rGh~Vt~~~~ 42 (433)
.+||++|.+ +||+|+++..
T Consensus 30 ~aLA~~L~~-~G~~V~li~r 48 (229)
T PRK06732 30 KIIAETFLA-AGHEVTLVTT 48 (229)
T ss_pred HHHHHHHHh-CCCEEEEEEC
Confidence 578899999 9999999864
No 226
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=38.18 E-value=2.1e+02 Score=27.62 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=39.9
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhc-CCcEEEEEeCCCchhhhhh
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRS-TGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~~~~ 51 (433)
++|+++-.-.-||+.=.+.+-..|++. -+.++++++.+.+.+.+..
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~ 48 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKL 48 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhc
Confidence 689999999999999999999999993 2699999998887776665
No 227
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=37.60 E-value=51 Score=31.21 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=29.2
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhh
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (433)
|+|+++-.++-|- .+|..|++ .||+|+++..+...+.+..
T Consensus 1 mkI~IiG~G~iG~-----~~a~~L~~-~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 1 MRIAVVGAGAVGG-----TFGGRLLE-AGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred CeEEEECCCHHHH-----HHHHHHHH-CCCceEEEecHHHHHHHHh
Confidence 4788887777775 67899999 9999999986333333333
No 228
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.35 E-value=64 Score=30.72 Aligned_cols=52 Identities=13% Similarity=0.320 Sum_probs=36.4
Q ss_pred ceEEecCCchhHHHHHh----cCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC
Q 041323 342 GAFLSYCGWNSALESLS----QGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 342 ~~~ithgG~~s~~eal~----~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
+++|+=||=||++.++. .++|++++-.. .+|..- .++.+++.++++++++++
T Consensus 66 dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt------~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 66 DMVISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFLA------TVSKEEIEETIDELLNGD 121 (292)
T ss_pred CEEEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCccc------ccCHHHHHHHHHHHHcCC
Confidence 37999999999999877 37888877321 123222 346778888888887654
No 229
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=37.35 E-value=75 Score=31.23 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=15.0
Q ss_pred cHHHHHHHhCCceEEEecch
Q 041323 99 WAVDVAKSAGTTNVTFITGG 118 (433)
Q Consensus 99 ~a~~vA~~lgiP~v~~~~~~ 118 (433)
....+|+.+|+|+++..++.
T Consensus 271 ~lA~~Ak~~~vPfyV~ap~~ 290 (363)
T PRK05772 271 KEAVIAHELGIPFYALAPTS 290 (363)
T ss_pred HHHHHHHHhCCCEEEEcccc
Confidence 33557899999999886553
No 230
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=37.30 E-value=53 Score=30.43 Aligned_cols=90 Identities=11% Similarity=0.086 Sum_probs=50.4
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCCCC
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPNTE 85 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~~~ 85 (433)
++|+++..-+.|. .||+.|.+ +|++|++.+...+.. ... .++..+.-.+. ..+++..-+.
T Consensus 3 ~~IlvlgGT~egr-----~la~~L~~-~g~~v~~Svat~~g~-~~~------------~~~~v~~G~l~-~~~~l~~~l~ 62 (248)
T PRK08057 3 PRILLLGGTSEAR-----ALARALAA-AGVDIVLSLAGRTGG-PAD------------LPGPVRVGGFG-GAEGLAAYLR 62 (248)
T ss_pred ceEEEEechHHHH-----HHHHHHHh-CCCeEEEEEccCCCC-ccc------------CCceEEECCCC-CHHHHHHHHH
Confidence 4778777666665 79999999 999888766555433 221 33343322221 0011111111
Q ss_pred CCccEEEEcCCcccH-------HHHHHHhCCceEEEe
Q 041323 86 NRELVFGSSTFFGWA-------VDVAKSAGTTNVTFI 115 (433)
Q Consensus 86 ~~~~~vv~d~~~~~a-------~~vA~~lgiP~v~~~ 115 (433)
...=-+|.|..-++| ..+|+++|||++-|-
T Consensus 63 ~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 63 EEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred HCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 000045666655544 456889999999874
No 231
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.02 E-value=2e+02 Score=29.03 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=24.1
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
+.+++++- .|. .- +++|+.|++ +|++|++....
T Consensus 5 ~k~v~iiG---~g~-~G-~~~A~~l~~-~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVVG---AGV-SG-LALAKFLKK-LGAKVILTDEK 37 (450)
T ss_pred CCEEEEEC---CCH-HH-HHHHHHHHH-CCCEEEEEeCC
Confidence 44676664 333 22 599999999 99999998754
No 232
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.48 E-value=63 Score=30.83 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=35.0
Q ss_pred ceEEecCCchhHHHHHh----cCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC
Q 041323 342 GAFLSYCGWNSALESLS----QGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 342 ~~~ithgG~~s~~eal~----~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
+++|+=||=||++.+.. .++|++++-.. .+|..-+ ++.+++.++|.++++++
T Consensus 70 D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~~------~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 70 DLVAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLTQ------IPREYMTDKLLPVLEGK 125 (296)
T ss_pred CEEEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEeec------cCHHHHHHHHHHHHcCC
Confidence 37999999999999964 37898887321 1233332 35677777777777543
No 233
>PRK04148 hypothetical protein; Provisional
Probab=36.22 E-value=94 Score=25.78 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=50.6
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCCC
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPNT 84 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~~ 84 (433)
+.+|+.+-.| .| ..+|..|++ .||+|+.+-.... .++.... .++++..-. -+.+..
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~-~G~~ViaIDi~~~--aV~~a~~---------~~~~~v~dD------lf~p~~ 72 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKE-SGFDVIVIDINEK--AVEKAKK---------LGLNAFVDD------LFNPNL 72 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHH-CCCEEEEEECCHH--HHHHHHH---------hCCeEEECc------CCCCCH
Confidence 4688888887 44 246889999 9999998864333 2332211 344444221 222221
Q ss_pred CC--CccEEEEcC----CcccHHHHHHHhCCceEEEecc
Q 041323 85 EN--RELVFGSST----FFGWAVDVAKSAGTTNVTFITG 117 (433)
Q Consensus 85 ~~--~~~~vv~d~----~~~~a~~vA~~lgiP~v~~~~~ 117 (433)
+- -.++|.+=. +......+|++.|++++....+
T Consensus 73 ~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 73 EIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred HHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11 111443221 2346778999999999986443
No 234
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=35.87 E-value=1.6e+02 Score=29.74 Aligned_cols=30 Identities=10% Similarity=0.292 Sum_probs=22.7
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEe
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIAN 41 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (433)
||.|+-.+..| |-.||+.|++ +|++|+..-
T Consensus 1 ~~~~iGiggsG----m~~la~~L~~-~G~~v~~~D 30 (448)
T TIGR01082 1 KIHFVGIGGIG----MSGIAEILLN-RGYQVSGSD 30 (448)
T ss_pred CEEEEEECHHH----HHHHHHHHHH-CCCeEEEEC
Confidence 35666666655 4459999999 999998764
No 235
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=35.85 E-value=88 Score=29.09 Aligned_cols=69 Identities=10% Similarity=-0.014 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCC-CCCCCCCccEEEEcCCcccHHH
Q 041323 24 ALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDL-PPNTENRELVFGSSTFFGWAVD 102 (433)
Q Consensus 24 ~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l-~~~~~~~~~~vv~d~~~~~a~~ 102 (433)
.+|++|++ .|.+||+++...-...+. .++.+-+.. +.. ..| -++...-+.....
T Consensus 125 ~~a~~L~~-~GI~vtli~Dsa~~~~m~--------------~vd~VlvGA----d~V~~nG------~v~nkvGT~~~Al 179 (253)
T PRK06372 125 DMAKLLVK-SGIDVVLLTDASMCEAVL--------------NVDAVIVGS----DSVLYDG------GLIHKNGTFPLAL 179 (253)
T ss_pred HHHHHHHH-CCCCEEEEehhHHHHHHH--------------hCCEEEECc----cEEecCC------CEeehhhHHHHHH
Confidence 68888888 888888775332222222 233333331 111 111 3445544556667
Q ss_pred HHHHhCCceEEEecc
Q 041323 103 VAKSAGTTNVTFITG 117 (433)
Q Consensus 103 vA~~lgiP~v~~~~~ 117 (433)
+|+.+++|+++++..
T Consensus 180 ~A~~~~vPv~V~~~s 194 (253)
T PRK06372 180 CARYLKKPFYSLTIS 194 (253)
T ss_pred HHHHcCCCEEEEeec
Confidence 889999999986444
No 236
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=35.77 E-value=77 Score=25.19 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=34.9
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhh
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (433)
+++..+.++..|-.-...++..|.+ .|++|.+.......+.+.
T Consensus 1 ~~l~~~~~~~~h~lg~~~~~~~l~~-~G~~v~~l~~~~~~~~~~ 43 (125)
T cd02065 1 KVLGATVGGDVHDIGKNIVAIALRD-NGFEVIDLGVDVPPEEIV 43 (125)
T ss_pred CEEEEEcCCchhhHHHHHHHHHHHH-CCCEEEEcCCCCCHHHHH
Confidence 3577788899999999999999999 999999997654444333
No 237
>PRK13236 nitrogenase reductase; Reviewed
Probab=35.75 E-value=66 Score=30.58 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=34.6
Q ss_pred CCCCCcEEEEeC-CCCcccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 1 MGSENEHTVMLP-LMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 1 m~~~~~~il~~~-~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
|..+++|++-+. =|+-|--+-.+.||..|++ +|++|.++-..
T Consensus 1 ~~~~~~~~~~~~GKGGVGKTt~a~NLA~~La~-~G~rVLliD~D 43 (296)
T PRK13236 1 MTDENIRQIAFYGKGGIGKSTTSQNTLAAMAE-MGQRILIVGCD 43 (296)
T ss_pred CCCcCceEEEEECCCcCCHHHHHHHHHHHHHH-CCCcEEEEEcc
Confidence 667778776663 4577999999999999999 99999999643
No 238
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=35.63 E-value=82 Score=31.14 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=27.4
Q ss_pred CcEEEEeC-CCCcccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 5 NEHTVMLP-LMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 5 ~~~il~~~-~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
.++|+++- .|..|. .+|+.|++ +||+|++....
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~-~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTL-SGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHH-CCCeEEEeCCC
Confidence 46899886 787786 68999999 99999999753
No 239
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=35.38 E-value=73 Score=29.78 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=23.3
Q ss_pred EEEEEeCCCCCCCHH-HHHHHHHHHHh--CCCeEEEEEcC
Q 041323 258 VLYISFGSQNTISSS-QTMELAIGLEA--SAKSFLWVIRP 294 (433)
Q Consensus 258 vv~vs~GS~~~~~~~-~~~~~~~al~~--~~~~~l~~~~~ 294 (433)
+|+|||||......+ .+..+.+.+++ .++.|-|++-+
T Consensus 3 IllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 3 ILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 788999998765444 66677777766 57888888754
No 240
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=34.98 E-value=38 Score=28.71 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=25.9
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (433)
+|.++-.|..|+ ++|..|++ +||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~-~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLAD-NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHH-CTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHH-cCCEEEEEeccH
Confidence 366666666676 79999999 999999998654
No 241
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=34.94 E-value=37 Score=30.19 Aligned_cols=41 Identities=12% Similarity=0.031 Sum_probs=26.6
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhh
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQY 48 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~ 48 (433)
||||+.-==+. +--=+..|+++|++ .||+|+++.|...+.-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~-~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSA-LGHDVVVVAPDSEQSG 41 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTT-TSSEEEEEEESSSTTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHh-cCCeEEEEeCCCCCcC
Confidence 45555542221 22336789999977 8899999998777543
No 242
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=34.87 E-value=51 Score=26.14 Aligned_cols=33 Identities=15% Similarity=-0.030 Sum_probs=21.3
Q ss_pred hccCCcceEEec---CCchhHHHH---HhcCCceEeccc
Q 041323 336 LSHKSTGAFLSY---CGWNSALES---LSQGLPMIGWPI 368 (433)
Q Consensus 336 l~~~~v~~~ith---gG~~s~~ea---l~~GvP~i~~P~ 368 (433)
+..+++-.++-. .+.||..|. .+.|+|++++--
T Consensus 59 i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 59 IRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp HHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 444554334444 489999996 778999998754
No 243
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=34.87 E-value=72 Score=26.07 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=27.2
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHHHh--CCCeEEEEEc
Q 041323 257 SVLYISFGSQNTISSSQTMELAIGLEA--SAKSFLWVIR 293 (433)
Q Consensus 257 ~vv~vs~GS~~~~~~~~~~~~~~al~~--~~~~~l~~~~ 293 (433)
.+|+++|||......+.+..+.+.+++ .+..+-|.+-
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 489999999986445667788888865 4567777754
No 244
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=34.78 E-value=65 Score=30.87 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=33.2
Q ss_pred cEEEEeC-CCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchh
Q 041323 6 EHTVMLP-LMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQ 47 (433)
Q Consensus 6 ~~il~~~-~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~ 47 (433)
||++|+. -|+-|-..-..++|..+++ +|++|.++++...+.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~-~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALAR-RGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHH-TTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhh-CCCCeeEeecCCCcc
Confidence 4566666 7888999999999999999 999999999876654
No 245
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.57 E-value=70 Score=30.67 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=36.5
Q ss_pred ceEEecCCchhHHHHHhc----CCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC
Q 041323 342 GAFLSYCGWNSALESLSQ----GLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 342 ~~~ithgG~~s~~eal~~----GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
.++|+=||=||++.++.. ++|++++... .+|...+ +..+++.+++.++++++
T Consensus 74 D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~~------~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 74 ELVLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLAE------AEAEDLDEAVERVVDRD 129 (306)
T ss_pred CEEEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceecc------CCHHHHHHHHHHHHcCC
Confidence 379999999999998764 7898888531 2333333 35677777887777654
No 246
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=34.53 E-value=2.7e+02 Score=23.12 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=20.4
Q ss_pred eEEecCC------chhHHHHHhcCCceEeccc
Q 041323 343 AFLSYCG------WNSALESLSQGLPMIGWPI 368 (433)
Q Consensus 343 ~~ithgG------~~s~~eal~~GvP~i~~P~ 368 (433)
++++|+| .+.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 5777765 3478889999999998853
No 247
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=34.44 E-value=85 Score=29.38 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=32.2
Q ss_pred CCCCCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhh
Q 041323 1 MGSENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 1 m~~~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (433)
|...+.+.++++..+.|= -.++|+.|++ |||+|.++. +..+.+++
T Consensus 1 ~~~~~~~~~lITGASsGI---G~~~A~~lA~-~g~~liLva--R~~~kL~~ 45 (265)
T COG0300 1 PGPMKGKTALITGASSGI---GAELAKQLAR-RGYNLILVA--RREDKLEA 45 (265)
T ss_pred CCCCCCcEEEEECCCchH---HHHHHHHHHH-CCCEEEEEe--CcHHHHHH
Confidence 344456777777766653 4789999999 999999997 44444433
No 248
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=33.93 E-value=1.9e+02 Score=29.44 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=26.0
Q ss_pred cEEEEeCCCCcccHHHHHH-HHHHHHhcCCcEEEEEeC
Q 041323 6 EHTVMLPLMAHGHLIPFLA-LAKQIHRSTGFKITIANT 42 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~-LA~~L~~~rGh~Vt~~~~ 42 (433)
.+|+|+-.+..| +. +|+.|++ +|++|+..-.
T Consensus 8 ~~v~viG~G~sG-----~s~~a~~L~~-~G~~V~~~D~ 39 (461)
T PRK00421 8 KRIHFVGIGGIG-----MSGLAEVLLN-LGYKVSGSDL 39 (461)
T ss_pred CEEEEEEEchhh-----HHHHHHHHHh-CCCeEEEECC
Confidence 489999998877 45 8999999 9999988753
No 249
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=33.73 E-value=1.8e+02 Score=22.78 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=46.7
Q ss_pred ccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCCC----CCCccEEE
Q 041323 17 GHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPNT----ENRELVFG 92 (433)
Q Consensus 17 GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~~----~~~~~~vv 92 (433)
.+=.=++++++.|.+ .|+++ ++ ++...+.+.. .|+.+..+.... .+.+.-. +..-++||
T Consensus 10 ~~k~~~~~~~~~l~~-~G~~l-~a-T~gT~~~l~~------------~gi~~~~v~~~~--~~~~~i~~~i~~~~id~vI 72 (110)
T cd01424 10 RDKPEAVEIAKRLAE-LGFKL-VA-TEGTAKYLQE------------AGIPVEVVNKVS--EGRPNIVDLIKNGEIQLVI 72 (110)
T ss_pred CcHhHHHHHHHHHHH-CCCEE-EE-chHHHHHHHH------------cCCeEEEEeecC--CCchhHHHHHHcCCeEEEE
Confidence 355568899999999 99998 34 5566677776 577655443221 1111100 01112444
Q ss_pred EcCC-------cccHHHHHHHhCCceEE
Q 041323 93 SSTF-------FGWAVDVAKSAGTTNVT 113 (433)
Q Consensus 93 ~d~~-------~~~a~~vA~~lgiP~v~ 113 (433)
.-.. ..+-...|-++|||+++
T Consensus 73 n~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 73 NTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred ECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 4211 23455678899999985
No 250
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.56 E-value=79 Score=29.74 Aligned_cols=52 Identities=17% Similarity=0.288 Sum_probs=35.9
Q ss_pred ceEEecCCchhHHHHHh-cCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC
Q 041323 342 GAFLSYCGWNSALESLS-QGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 342 ~~~ithgG~~s~~eal~-~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
.++|+=||=||+..++. ...|++++-. - .+|..- .++.+++.++++++++++
T Consensus 54 D~vi~lGGDGT~L~a~~~~~~PilGIN~--------G------~lGFL~------~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 54 DVIITIGGDGTILRTLQRAKGPILGINM--------G------GLGFLT------EIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CEEEEEcCcHHHHHHHHHcCCCEEEEEC--------C------CCccCc------ccCHHHHHHHHHHHHcCC
Confidence 47999999999999987 3567766521 0 123222 346788888888888754
No 251
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=33.50 E-value=1e+02 Score=32.49 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=49.7
Q ss_pred ChHHhhccCCcceEEecCC-ch-hHHHHHhcCCceEeccccc-chhhHHH--HHHHHhcceEEEccCCCCcccHHHHHHH
Q 041323 331 PQLEILSHKSTGAFLSYCG-WN-SALESLSQGLPMIGWPIAA-EQTYNSK--MLVEEMGMAVELTRGVQSTIVGHDVKNV 405 (433)
Q Consensus 331 pq~~il~~~~v~~~ithgG-~~-s~~eal~~GvP~i~~P~~~-dQ~~na~--~~~~~~G~g~~l~~~~~~~~~~~~l~~a 405 (433)
++.+++.-++++.|-|.== || |-+|++++|||.|.-=+.+ -++.+-. .-.. .|+-|+=+.+.+-.-..++|++.
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~-~GV~VvdR~~~n~~e~v~~la~~ 540 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEE-YGVYVVDRRDKNYDESVNQLADF 540 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGG-GTEEEE-SSSS-HHHHHHHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcC-CcEEEEeCCCCCHHHHHHHHHHH
Confidence 4666777777766666321 33 8899999999999876532 2222211 1122 25544444322222233444444
Q ss_pred HHHHhc-CCchhHHHHHHHHHHHHHH
Q 041323 406 IEMVMD-EAGKGQEMKAKAEKIGRQI 430 (433)
Q Consensus 406 i~~vl~-~~~~~~~~~~~a~~l~~~~ 430 (433)
+.+... +...+...|++|+++++++
T Consensus 541 l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 541 LYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 444433 3335567888888888754
No 252
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=33.42 E-value=2.8e+02 Score=27.21 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=28.1
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcC
Q 041323 258 VLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRP 294 (433)
Q Consensus 258 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~ 294 (433)
|+++++|+.+ ...-+..++++|.+.|.+|.+.+..
T Consensus 3 Il~~~~p~~G--Hv~P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 3 VLITTIGSRG--DVQPLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred EEEEeCCCcc--hHHHHHHHHHHHHHCCCeEEEeeCH
Confidence 7888999876 3455678889999999999988774
No 253
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.36 E-value=1.9e+02 Score=29.32 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=26.2
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeC
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~ 42 (433)
.+|+++-++..| +.+|+.|++ +|++|+..-.
T Consensus 15 ~~i~v~G~G~sG-----~a~a~~L~~-~G~~V~~~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSN-----IPLIKFLVK-LGAKVTAFDK 45 (458)
T ss_pred CeEEEEcccHHH-----HHHHHHHHH-CCCEEEEECC
Confidence 488888888877 489999999 9999998753
No 254
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=33.35 E-value=1.8e+02 Score=29.43 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=22.3
Q ss_pred EEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeC
Q 041323 8 TVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (433)
Q Consensus 8 il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~ 42 (433)
|-|+-.++.| |-+||+.|++ +|++|+..-.
T Consensus 2 ~hfigigG~g----m~~la~~l~~-~G~~V~~~D~ 31 (448)
T TIGR01081 2 IHILGICGTF----MGGLAMIAKQ-LGHEVTGSDA 31 (448)
T ss_pred EEEEEECHHh----HHHHHHHHHh-CCCEEEEECC
Confidence 3444455544 7899999999 9999988653
No 255
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=33.26 E-value=67 Score=31.17 Aligned_cols=99 Identities=9% Similarity=0.043 Sum_probs=57.7
Q ss_pred CCcEEEEEeCCC-C---CCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhc-CCC-eEEec
Q 041323 255 PGSVLYISFGSQ-N---TISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEET-KQG-LLVRN 328 (433)
Q Consensus 255 ~~~vv~vs~GS~-~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-v~~~~ 328 (433)
+++.|.+..|+. . ..+.+.+.++++.|.+.+.++++. |+.. +. + .-+.+.+..... ..+ +.+.+
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~-Gg~~------e~--~-~~~~i~~~~~~~~~~~~~~l~g 248 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLF-GSAK------DH--E-AGNEILAALNTEQQAWCRNLAG 248 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEE-eCHH------hH--H-HHHHHHHhcccccccceeeccC
Confidence 456788888874 2 356788999999987777886654 4321 10 0 111111111100 001 22223
Q ss_pred cc--ChH-HhhccCCcceEEecCCchhHHHHHhcCCceEec
Q 041323 329 WA--PQL-EILSHKSTGAFLSYCGWNSALESLSQGLPMIGW 366 (433)
Q Consensus 329 ~~--pq~-~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~ 366 (433)
-. .+. .++++++ +||+. -.|-++=|.+.|+|+|++
T Consensus 249 ~~sL~el~ali~~a~--l~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 249 ETQLEQAVILIAACK--AIVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred CCCHHHHHHHHHhCC--EEEec-CChHHHHHHHhCCCEEEE
Confidence 32 333 4778888 47775 567888899999999965
No 256
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.84 E-value=87 Score=29.34 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=35.0
Q ss_pred ceEEecCCchhHHHHHhc-----CCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC
Q 041323 342 GAFLSYCGWNSALESLSQ-----GLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 342 ~~~ithgG~~s~~eal~~-----GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
.++|+=||=||+..++.. .+|++++-..+ .+|..- .++.+++.+++.++++++
T Consensus 41 D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL~------~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 41 NIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFYC------DFHIDDLDKMIQAITKEE 98 (264)
T ss_pred cEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEcc------cCCHHHHHHHHHHHHcCC
Confidence 369999999999999874 56766663200 123332 345677888887777654
No 257
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.73 E-value=77 Score=30.18 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=35.8
Q ss_pred ceEEecCCchhHHHHHh----cCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC
Q 041323 342 GAFLSYCGWNSALESLS----QGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 342 ~~~ithgG~~s~~eal~----~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
+++|+=||=||+..++. .++|++.+-.. .+|..- .++.+++.+++++++++.
T Consensus 65 d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl~------~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 65 DLAIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFLT------DLDPDNALQQLSDVLEGH 120 (292)
T ss_pred CEEEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCccc------ccCHHHHHHHHHHHHcCC
Confidence 37999999999999975 36788776321 123322 245678888888887654
No 258
>PRK07454 short chain dehydrogenase; Provisional
Probab=32.60 E-value=85 Score=28.27 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=28.7
Q ss_pred CCCCCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeC
Q 041323 1 MGSENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (433)
Q Consensus 1 m~~~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~ 42 (433)
|+..+++.++++.+ .|.+ -..|+++|.+ +|++|+++.-
T Consensus 1 ~~~~~~k~vlItG~-sg~i--G~~la~~l~~-~G~~V~~~~r 38 (241)
T PRK07454 1 MSLNSMPRALITGA-SSGI--GKATALAFAK-AGWDLALVAR 38 (241)
T ss_pred CCCCCCCEEEEeCC-CchH--HHHHHHHHHH-CCCEEEEEeC
Confidence 77777877777653 4543 4678999999 9999998863
No 259
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.90 E-value=94 Score=28.92 Aligned_cols=52 Identities=12% Similarity=0.234 Sum_probs=35.3
Q ss_pred ceEEecCCchhHHHHHh-cCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC
Q 041323 342 GAFLSYCGWNSALESLS-QGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 342 ~~~ithgG~~s~~eal~-~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
.++|+=||=||+..|+. .++|++.+-.. .+|... ..+.+++.+++.++++.+
T Consensus 43 d~vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl~------~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 43 DLIIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFLS------SYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CEEEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCcccc------ccCHHHHHHHHHHHHcCC
Confidence 36999999999999976 57777766310 123232 245677888888877654
No 260
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=31.80 E-value=31 Score=28.89 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=28.1
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHHH-----hCCCeEEEEEcCC
Q 041323 257 SVLYISFGSQNTISSSQTMELAIGLE-----ASAKSFLWVIRPP 295 (433)
Q Consensus 257 ~vv~vs~GS~~~~~~~~~~~~~~al~-----~~~~~~l~~~~~~ 295 (433)
.||+|+.|+........+..++.... .....++|+++..
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~ 46 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDA 46 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-T
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCch
Confidence 48999999987655666777777665 2447899999864
No 261
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=31.70 E-value=4.3e+02 Score=24.61 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=25.4
Q ss_pred HHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCC
Q 041323 247 IEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPP 295 (433)
Q Consensus 247 ~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~ 295 (433)
.+++.+.. +++.|.-+.+.+ ..+++++.+.+.+++.+.|..
T Consensus 102 ~~~l~~~~--d~lkI~s~~~~n------~~LL~~~a~~gkPVilk~G~~ 142 (260)
T TIGR01361 102 VEIVAEYA--DILQIGARNMQN------FELLKEVGKQGKPVLLKRGMG 142 (260)
T ss_pred HHHHHhhC--CEEEECcccccC------HHHHHHHhcCCCcEEEeCCCC
Confidence 34444432 366665555543 347777778888888887743
No 262
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=31.53 E-value=2.2e+02 Score=25.84 Aligned_cols=162 Identities=12% Similarity=0.028 Sum_probs=74.3
Q ss_pred chhHHHhhhcCCCCcEEEEEeCCCCCCCHHH-HHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcC
Q 041323 243 PEKIIEWLDLHHPGSVLYISFGSQNTISSSQ-TMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETK 321 (433)
Q Consensus 243 ~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~-~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (433)
.+++.+.+....-++|-+-............ ...+.+.+++.+..+.+-++... .+........
T Consensus 87 ~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~------------~~~~~~~~~~--- 151 (273)
T PF04909_consen 87 VEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTG------------FPDAPSDPAD--- 151 (273)
T ss_dssp HHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTH------------HHHHHHHHHH---
T ss_pred HHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccc------------hhhhhHHHHH---
Confidence 3466667654443333222211112223333 34888999999988777655110 0000000000
Q ss_pred CCeEEecccChHHhhccCCcceEEecCCch--hHHHHHhc--CCceEe------------cccccchhhHHHHHHHHhcc
Q 041323 322 QGLLVRNWAPQLEILSHKSTGAFLSYCGWN--SALESLSQ--GLPMIG------------WPIAAEQTYNSKMLVEEMGM 385 (433)
Q Consensus 322 ~~v~~~~~~pq~~il~~~~v~~~ithgG~~--s~~eal~~--GvP~i~------------~P~~~dQ~~na~~~~~~~G~ 385 (433)
...=...+..+|+++.++.|+|.. -..+++.. ..|-+. .+.....+.-...+... |.
T Consensus 152 ------~~~~~~~~~~~P~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~~~~~~~~~l~~~~~~~-g~ 224 (273)
T PF04909_consen 152 ------PEELEELLERFPDLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFWPPSFDRPFLRRAVDEF-GP 224 (273)
T ss_dssp ------HHHHTTHHHHSTTSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEETTHHCHHHHHHHHHHH-TG
T ss_pred ------HHHHHHHHHHhcCCeEEEecCcccchhHHHHHHHHHhCCcccccccccccccccCcccccHHHHHHHHHHh-CC
Confidence 000012345789999999999999 44443221 334332 22234455555556663 77
Q ss_pred eEEEccCCCCcccH-HHHHHHHHHH----hcCCchhHHHHHHHHHH
Q 041323 386 AVELTRGVQSTIVG-HDVKNVIEMV----MDEAGKGQEMKAKAEKI 426 (433)
Q Consensus 386 g~~l~~~~~~~~~~-~~l~~ai~~v----l~~~~~~~~~~~~a~~l 426 (433)
-..+....-..... .......... ++++...+-+.+||+++
T Consensus 225 drilfGSD~P~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~NA~rl 270 (273)
T PF04909_consen 225 DRILFGSDYPHPDGASPYEYIWEAYFLDDLSEEEREKILYDNARRL 270 (273)
T ss_dssp GGEEEE--TTSSTHHHHHHHHHHHHHHHHSSHHHHHHHHTHHHHHH
T ss_pred ceEEecCCCCCCCccccHHHHHHhhhccCCCHHHHHHHHhHhHHHH
Confidence 66664311011111 1111111111 24444555677888776
No 263
>PLN02939 transferase, transferring glycosyl groups
Probab=31.47 E-value=81 Score=35.16 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=29.3
Q ss_pred CCcEEEEeCC---CC--cccH-HHHHHHHHHHHhcCCcEEEEEeCCC
Q 041323 4 ENEHTVMLPL---MA--HGHL-IPFLALAKQIHRSTGFKITIANTPL 44 (433)
Q Consensus 4 ~~~~il~~~~---~~--~GHv-~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (433)
++|||++++. |. .|-+ .-.-.|+++|++ .||+|.+++|..
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~-~GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQK-KGHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHH-cCCeEEEEeCCC
Confidence 5699999872 22 2333 345679999999 999999998743
No 264
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=31.07 E-value=1.1e+02 Score=29.33 Aligned_cols=22 Identities=9% Similarity=-0.186 Sum_probs=16.5
Q ss_pred cccHHHHHHHhCCceEEEecch
Q 041323 97 FGWAVDVAKSAGTTNVTFITGG 118 (433)
Q Consensus 97 ~~~a~~vA~~lgiP~v~~~~~~ 118 (433)
+.....+|+.+++|++++..+.
T Consensus 206 T~~lA~~Ak~~~vPv~V~a~~~ 227 (301)
T TIGR00511 206 TSQLALAAREARVPFMVAAETY 227 (301)
T ss_pred HHHHHHHHHHhCCCEEEEcccc
Confidence 4455567899999999986654
No 265
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=30.95 E-value=1.1e+02 Score=27.47 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=31.7
Q ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 041323 4 ENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (433)
Q Consensus 4 ~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (433)
.+++|.+=..|+-|-.+-||.=|++|.+ +|.+|.+...+..
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~-~G~DVViG~veth 44 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKE-QGVDVVIGYVETH 44 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHH-TT--EEEEE---T
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHH-CCCCEEEEEecCC
Confidence 3678999999999999999999999999 9999998775543
No 266
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=30.90 E-value=48 Score=26.73 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhh
Q 041323 19 LIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 19 v~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (433)
+.|++.+.-.+.- |||++++..|..+...+..
T Consensus 9 Vk~L~eIll~Fil-rGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFIL-RGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHh-ccCeeEEEChHHHhccccc
Confidence 6789999999999 9999999998777665554
No 267
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=30.80 E-value=97 Score=26.44 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=19.4
Q ss_pred eEEecCC------chhHHHHHhcCCceEecc
Q 041323 343 AFLSYCG------WNSALESLSQGLPMIGWP 367 (433)
Q Consensus 343 ~~ithgG------~~s~~eal~~GvP~i~~P 367 (433)
+++++.| .+.+.+|...++|+|++.
T Consensus 62 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 62 ALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred EEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 4566655 347889999999999985
No 268
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=30.73 E-value=39 Score=31.13 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCC
Q 041323 20 IPFLALAKQIHRSTGFKITIANTPL 44 (433)
Q Consensus 20 ~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (433)
.-.-.|+++|++ +||+|++++|..
T Consensus 20 dv~~~L~kaL~~-~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAK-QGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHH-TT-EEEEEEE-T
T ss_pred HHHHHHHHHHHh-cCCeEEEEEccc
Confidence 345679999999 999999998643
No 269
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=30.72 E-value=1.9e+02 Score=27.30 Aligned_cols=88 Identities=19% Similarity=0.263 Sum_probs=52.4
Q ss_pred hHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCe
Q 041323 245 KIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGL 324 (433)
Q Consensus 245 ~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 324 (433)
+..++|.+.+ .++++.+|+.. .....+...|.+.|.++....... .
T Consensus 122 ~av~~L~~A~--rI~~~G~g~S~----~vA~~~~~~l~~ig~~~~~~~d~~----------------~------------ 167 (281)
T COG1737 122 RAVELLAKAR--RIYFFGLGSSG----LVASDLAYKLMRIGLNVVALSDTH----------------G------------ 167 (281)
T ss_pred HHHHHHHcCC--eEEEEEechhH----HHHHHHHHHHHHcCCceeEecchH----------------H------------
Confidence 3455665543 36666666554 334556667777777766553321 0
Q ss_pred EEecccChHHhhccCCcceEEecCCch-----hHHHHHhcCCceEeccccc
Q 041323 325 LVRNWAPQLEILSHKSTGAFLSYCGWN-----SALESLSQGLPMIGWPIAA 370 (433)
Q Consensus 325 ~~~~~~pq~~il~~~~v~~~ithgG~~-----s~~eal~~GvP~i~~P~~~ 370 (433)
.+ .+...+...++-.+|++.|.. .+..|-..|+|+|.+--..
T Consensus 168 ---~~-~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~ 214 (281)
T COG1737 168 ---QL-MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSA 214 (281)
T ss_pred ---HH-HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 11 133444555555799999975 4556678999999885443
No 270
>PRK09620 hypothetical protein; Provisional
Probab=30.43 E-value=68 Score=29.32 Aligned_cols=38 Identities=5% Similarity=-0.001 Sum_probs=26.3
Q ss_pred CcEEEEeCCCCcccHHHH------------HHHHHHHHhcCCcEEEEEeCC
Q 041323 5 NEHTVMLPLMAHGHLIPF------------LALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~------------l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
..+|++...|+.=.+.|. ..||++|.+ +|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~-~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELIS-KGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 346776655544333332 678999999 99999999744
No 271
>PRK13604 luxD acyl transferase; Provisional
Probab=30.25 E-value=94 Score=29.82 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=30.1
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEe
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIAN 41 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (433)
..+++++++..++-.-+..+|+.|++ +|+.|.-+-
T Consensus 37 ~~~vIi~HGf~~~~~~~~~~A~~La~-~G~~vLrfD 71 (307)
T PRK13604 37 NNTILIASGFARRMDHFAGLAEYLSS-NGFHVIRYD 71 (307)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHH-CCCEEEEec
Confidence 36778888888887779999999999 999998774
No 272
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=30.22 E-value=43 Score=27.73 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhh
Q 041323 19 LIPFLALAKQIHRSTGFKITIANTPLNIQYLQNT 52 (433)
Q Consensus 19 v~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~ 52 (433)
+--.+-|+..|+. +||+|++++++.-...++-+
T Consensus 13 ~p~alYl~~~Lk~-~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 13 TPSALYLSYKLKK-KGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp HHHHHHHHHHHHC-TTEEEEEEE-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHh-cCCeEEEecCHHHHhHhhhc
Confidence 3446789999999 99999999988777766653
No 273
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=30.09 E-value=73 Score=30.04 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=25.4
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeC
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~ 42 (433)
|+|+++-.|.-| ..+|..|++ .||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~-~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQ-AGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHh-CCCeEEEEEC
Confidence 467888776666 468899999 9999999985
No 274
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=29.68 E-value=38 Score=30.90 Aligned_cols=96 Identities=11% Similarity=0.162 Sum_probs=46.4
Q ss_pred CcEEEEeCCCCc-ccHHH---HHHHHHHHHhcCCcEEEEEeCCCc--hhhhhhhccCCCCCCCCCCcee--EEEcCCCCC
Q 041323 5 NEHTVMLPLMAH-GHLIP---FLALAKQIHRSTGFKITIANTPLN--IQYLQNTISCANPNSPEKFNVN--LVELPFCSL 76 (433)
Q Consensus 5 ~~~il~~~~~~~-GHv~P---~l~LA~~L~~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~--f~~l~~~~~ 76 (433)
+.-|++.+..+. .--.| +.+|++.|.+ +|.+|.++.++.. .+.+.... .+.+ +..+...
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~-~~~~vvl~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-- 171 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKE-RGYRVVLLGGPEEQEKEIADQIA----------AGLQNPVINLAGK-- 171 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCC-CT-EEEE--SSHHHHHHHHHHHH----------TTHTTTTEEETTT--
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHh-hCceEEEEccchHHHHHHHHHHH----------HhcccceEeecCC--
Confidence 456777766544 22223 6999999999 9989988887666 22222211 1111 2222100
Q ss_pred CCCCCC---CCCCCccEEE-EcCCcccHHHHHHHhCCceEEEecch
Q 041323 77 DHDLPP---NTENRELVFG-SSTFFGWAVDVAKSAGTTNVTFITGG 118 (433)
Q Consensus 77 ~~~l~~---~~~~~~~~vv-~d~~~~~a~~vA~~lgiP~v~~~~~~ 118 (433)
..+.+ -... .+++| .| .+...+|..+|+|.+.++...
T Consensus 172 -~~l~e~~ali~~-a~~~I~~D---tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 172 -TSLRELAALISR-ADLVIGND---TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp -S-HHHHHHHHHT-SSEEEEES---SHHHHHHHHTT--EEEEESSS
T ss_pred -CCHHHHHHHHhc-CCEEEecC---ChHHHHHHHHhCCEEEEecCC
Confidence 01110 0011 12444 45 367789999999999987654
No 275
>PRK08322 acetolactate synthase; Reviewed
Probab=29.66 E-value=2.3e+02 Score=29.50 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=21.6
Q ss_pred cceEEecCC------chhHHHHHhcCCceEecc
Q 041323 341 TGAFLSYCG------WNSALESLSQGLPMIGWP 367 (433)
Q Consensus 341 v~~~ithgG------~~s~~eal~~GvP~i~~P 367 (433)
.+++++|.| .+.+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 345777877 458899999999999884
No 276
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=29.62 E-value=51 Score=27.41 Aligned_cols=27 Identities=11% Similarity=0.353 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCcEEEEEeCCCchhhhhh
Q 041323 24 ALAKQIHRSTGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 24 ~LA~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (433)
-+|..|++ .||+|++++.....+.+..
T Consensus 12 ~~a~~L~~-~g~~V~l~~r~~~~~~~~~ 38 (151)
T PF02558_consen 12 LYAARLAQ-AGHDVTLVSRSPRLEAIKE 38 (151)
T ss_dssp HHHHHHHH-TTCEEEEEESHHHHHHHHH
T ss_pred HHHHHHHH-CCCceEEEEccccHHhhhh
Confidence 47899999 9999999997663444554
No 277
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=29.61 E-value=43 Score=34.03 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCcEEEEEeCC
Q 041323 22 FLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 22 ~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
.-.|+++|++ +||+|+++++.
T Consensus 22 ~~~L~~aL~~-~G~~V~Vi~p~ 42 (476)
T cd03791 22 VGALPKALAK-LGHDVRVIMPK 42 (476)
T ss_pred HHHHHHHHHH-CCCeEEEEecC
Confidence 3569999999 99999999864
No 278
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=29.49 E-value=1.7e+02 Score=25.33 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=36.8
Q ss_pred CCCCCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 041323 1 MGSENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (433)
Q Consensus 1 m~~~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (433)
|.+..|+|.+.-.|+.|-..-.+.+|..|.+ +|+.|-=+-++.-
T Consensus 1 ~~~~~mki~ITG~PGvGKtTl~~ki~e~L~~-~g~kvgGf~t~EV 44 (179)
T COG1618 1 MIKMAMKIFITGRPGVGKTTLVLKIAEKLRE-KGYKVGGFITPEV 44 (179)
T ss_pred CCCcceEEEEeCCCCccHHHHHHHHHHHHHh-cCceeeeEEeeee
Confidence 4556789999999999999999999999999 9999954444443
No 279
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=29.47 E-value=64 Score=30.54 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCC
Q 041323 270 SSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCG 349 (433)
Q Consensus 270 ~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG 349 (433)
+.+...++.+++.+..++.||.++++. + -.++.++++...+-.||. .||=..-
T Consensus 47 ~~~Ra~dL~~a~~d~~i~aI~~~rGGy------g-------------------~~rlL~~ld~~~i~~~pK--~~iGySD 99 (284)
T PF02016_consen 47 DEERAEDLNEAFADPEIDAIWCARGGY------G-------------------ANRLLPYLDYDAIRKNPK--IFIGYSD 99 (284)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEES--SS--------------------------GGGGGGGCHHHHHHHSG---EEEE-GG
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeeccc------c-------------------HHHHHhcccccccccCCC--EEEEecc
Confidence 456688899999999999999988652 0 111347777777777877 4888888
Q ss_pred chhHHHHHhc--CCceEecccc
Q 041323 350 WNSALESLSQ--GLPMIGWPIA 369 (433)
Q Consensus 350 ~~s~~eal~~--GvP~i~~P~~ 369 (433)
..+++-+++. |.+.+--|..
T Consensus 100 iTaL~~al~~~~g~~t~hGp~~ 121 (284)
T PF02016_consen 100 ITALHNALYAKTGLVTFHGPML 121 (284)
T ss_dssp GHHHHHHHHHHHTBEEEES--H
T ss_pred hHHHHHHHHHhCCCeEEEcchh
Confidence 8877777653 6777777764
No 280
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=29.36 E-value=4.7e+02 Score=30.09 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=38.7
Q ss_pred CCchhHHHhhhcC----CCCcEEEEEeCCCC--CCCHHHHHHHHHHHHhCCCeEEEEEc
Q 041323 241 VNPEKIIEWLDLH----HPGSVLYISFGSQN--TISSSQTMELAIGLEASAKSFLWVIR 293 (433)
Q Consensus 241 ~~~~~l~~~l~~~----~~~~vv~vs~GS~~--~~~~~~~~~~~~al~~~~~~~l~~~~ 293 (433)
...++..+|.... +.+|+|-|-|.... ..+...+..++++|++.|..++-++.
T Consensus 52 ~~~~eYl~w~~~~~~~~~~~P~VgIlfyrs~~~~g~~~~vdaLI~~LE~~G~nvipvf~ 110 (1098)
T PF02514_consen 52 ESLEEYLAWYRKRGRYDPNRPTVGILFYRSYWLSGNTAVVDALIRALEERGLNVIPVFC 110 (1098)
T ss_pred CCHHHHHHHHhhhcccCCCCCEEEEEeehhhhhcCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence 4556788898753 45677777776544 23456788999999999999887774
No 281
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=29.23 E-value=1.3e+02 Score=28.92 Aligned_cols=22 Identities=9% Similarity=-0.212 Sum_probs=16.2
Q ss_pred cccHHHHHHHhCCceEEEecch
Q 041323 97 FGWAVDVAKSAGTTNVTFITGG 118 (433)
Q Consensus 97 ~~~a~~vA~~lgiP~v~~~~~~ 118 (433)
+.....+|+.+++|++++..+.
T Consensus 211 T~~~A~~Ak~~~vPv~V~a~~~ 232 (310)
T PRK08535 211 TSQIALAAHEARVPFMVAAETY 232 (310)
T ss_pred HHHHHHHHHHhCCCEEEecccc
Confidence 3445567889999999876654
No 282
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=29.22 E-value=1.1e+02 Score=28.64 Aligned_cols=29 Identities=7% Similarity=-0.304 Sum_probs=17.8
Q ss_pred EEEEcCCcccHHHHHHHhCCceEEEecch
Q 041323 90 VFGSSTFFGWAVDVAKSAGTTNVTFITGG 118 (433)
Q Consensus 90 ~vv~d~~~~~a~~vA~~lgiP~v~~~~~~ 118 (433)
-|+...-+.....+|+.+++|+++++.+.
T Consensus 192 ~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~ 220 (282)
T PF01008_consen 192 GVVNKVGTLQLALAAKEFNVPVYVLAESY 220 (282)
T ss_dssp -EEEETTHHHHHHHHHHTT-EEEEE--GG
T ss_pred CEeehhhHHHHHHHHHhhCCCEEEEcccc
Confidence 34555445556678899999999986553
No 283
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=29.11 E-value=2e+02 Score=30.16 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=21.0
Q ss_pred ceEEecCCch------hHHHHHhcCCceEecc
Q 041323 342 GAFLSYCGWN------SALESLSQGLPMIGWP 367 (433)
Q Consensus 342 ~~~ithgG~~------s~~eal~~GvP~i~~P 367 (433)
+++++|.|-| .+.+|...++|+|++-
T Consensus 80 gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 80 GVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred eEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3578887744 6889999999999884
No 284
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=29.03 E-value=94 Score=29.49 Aligned_cols=37 Identities=11% Similarity=-0.056 Sum_probs=26.1
Q ss_pred EEEeCCCC-cccHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 041323 8 TVMLPLMA-HGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (433)
Q Consensus 8 il~~~~~~-~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (433)
|++++.-. .+.-.-+..+++.|.+ +||+|++++....
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~L~~-~g~~v~v~~~~~~ 39 (355)
T cd03799 2 IAYLVKEFPRLSETFILREILALEA-AGHEVEIFSLRPP 39 (355)
T ss_pred EEEECCCCCCcchHHHHHHHHHHHh-CCCeEEEEEecCc
Confidence 55555222 2244568899999999 9999999986543
No 285
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.03 E-value=1e+02 Score=29.38 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=36.5
Q ss_pred eEEecCCchhHHHHHh----cCCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC
Q 041323 343 AFLSYCGWNSALESLS----QGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 343 ~~ithgG~~s~~eal~----~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
++|+=||=||+++++. .++|++++... .+|.. ...+.+++.++|.++++++
T Consensus 65 ~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGFl------~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 65 LVIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGFL------TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred EEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 6999999999999975 36788877531 12322 2356788888898888654
No 286
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=28.76 E-value=50 Score=29.79 Aligned_cols=92 Identities=17% Similarity=0.162 Sum_probs=49.6
Q ss_pred CCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCCCccEEEE
Q 041323 14 MAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPNTENRELVFGS 93 (433)
Q Consensus 14 ~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~~~~~~~~vv~ 93 (433)
++.|.+- ..+++.|.+ +||+|+.++-............ .|+++....+. ..+.+.......+.+++.
T Consensus 5 GatG~~G--~~v~~~L~~-~~~~V~~l~R~~~~~~~~~l~~---------~g~~vv~~d~~-~~~~l~~al~g~d~v~~~ 71 (233)
T PF05368_consen 5 GATGNQG--RSVVRALLS-AGFSVRALVRDPSSDRAQQLQA---------LGAEVVEADYD-DPESLVAALKGVDAVFSV 71 (233)
T ss_dssp TTTSHHH--HHHHHHHHH-TTGCEEEEESSSHHHHHHHHHH---------TTTEEEES-TT--HHHHHHHHTTCSEEEEE
T ss_pred CCccHHH--HHHHHHHHh-CCCCcEEEEeccchhhhhhhhc---------ccceEeecccC-CHHHHHHHHcCCceEEee
Confidence 4444443 678999999 9999999997665544443222 56777755432 111111112222223332
Q ss_pred cCC--------cccHHHHHHHhCCceEEEecch
Q 041323 94 STF--------FGWAVDVAKSAGTTNVTFITGG 118 (433)
Q Consensus 94 d~~--------~~~a~~vA~~lgiP~v~~~~~~ 118 (433)
-.. ..-...+|.+.||+.++++...
T Consensus 72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~ 104 (233)
T PF05368_consen 72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFG 104 (233)
T ss_dssp SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEES
T ss_pred cCcchhhhhhhhhhHHHhhhccccceEEEEEec
Confidence 221 1134567888999999875553
No 287
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=28.74 E-value=66 Score=31.10 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=27.3
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
|+|.|+-.+.-|- .+|..|++ .||+|+++...
T Consensus 3 mkI~IiG~G~mG~-----~~A~~L~~-~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGC-----YLGGRLAA-AGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHH-----HHHHHHHh-cCCcEEEEecH
Confidence 6899998888775 68999999 99999999753
No 288
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=27.87 E-value=3.4e+02 Score=26.96 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=49.6
Q ss_pred HHhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcce-EEEccCCCCcccHHHHHHHHHHHhc
Q 041323 333 LEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMA-VELTRGVQSTIVGHDVKNVIEMVMD 411 (433)
Q Consensus 333 ~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g-~~l~~~~~~~~~~~~l~~ai~~vl~ 411 (433)
..+++++++ +--.=+-++.-|++.|+|.|++-+ |+.+...+++ +|+- ..+.. ...+.+.+...+.+.+.
T Consensus 280 ~~~l~~~dl---~Vg~R~HsaI~al~~g~p~i~i~Y---~~K~~~l~~~-~gl~~~~~~i---~~~~~~~l~~~~~e~~~ 349 (385)
T COG2327 280 GGILAACDL---IVGMRLHSAIMALAFGVPAIAIAY---DPKVRGLMQD-LGLPGFAIDI---DPLDAEILSAVVLERLT 349 (385)
T ss_pred HHHhccCce---EEeehhHHHHHHHhcCCCeEEEee---cHHHHHHHHH-cCCCcccccC---CCCchHHHHHHHHHHHh
Confidence 346777773 333346789999999999998843 4555567777 5874 44444 67888999888888776
Q ss_pred CC
Q 041323 412 EA 413 (433)
Q Consensus 412 ~~ 413 (433)
+.
T Consensus 350 ~~ 351 (385)
T COG2327 350 KL 351 (385)
T ss_pred cc
Confidence 54
No 289
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.72 E-value=97 Score=29.24 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=21.8
Q ss_pred ceEEecCCchhHHHHHh---cCCceEeccc
Q 041323 342 GAFLSYCGWNSALESLS---QGLPMIGWPI 368 (433)
Q Consensus 342 ~~~ithgG~~s~~eal~---~GvP~i~~P~ 368 (433)
.++|+-||=||+.+++. .++|+++++.
T Consensus 59 d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 59 DFIIAIGGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred CEEEEEeCcHHHHHHHHhcCCCCeEEEEeC
Confidence 37999999999999974 4568888874
No 290
>PLN02929 NADH kinase
Probab=27.33 E-value=1.2e+02 Score=29.09 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=41.9
Q ss_pred ceEEecCCchhHHHHHh---cCCceEeccccc------chhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcC
Q 041323 342 GAFLSYCGWNSALESLS---QGLPMIGWPIAA------EQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDE 412 (433)
Q Consensus 342 ~~~ithgG~~s~~eal~---~GvP~i~~P~~~------dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~ 412 (433)
+++|+-||=||+..|.. .++|++++=.-- .++.|.....+ -+|..-. .+.+++.++|.+++++
T Consensus 66 Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r--~lGfL~~------~~~~~~~~~L~~il~g 137 (301)
T PLN02929 66 DLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARR--STGHLCA------ATAEDFEQVLDDVLFG 137 (301)
T ss_pred CEEEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccccc--Ccccccc------CCHHHHHHHHHHHHcC
Confidence 37999999999999855 468988874421 12333322111 2555543 4678999999999976
Q ss_pred C
Q 041323 413 A 413 (433)
Q Consensus 413 ~ 413 (433)
+
T Consensus 138 ~ 138 (301)
T PLN02929 138 R 138 (301)
T ss_pred C
Confidence 4
No 291
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=27.27 E-value=97 Score=27.27 Aligned_cols=43 Identities=14% Similarity=0.046 Sum_probs=34.9
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcC-CcEEEEEeCCCchhhhhh
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRST-GFKITIANTPLNIQYLQN 51 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~r-Gh~Vt~~~~~~~~~~~~~ 51 (433)
||++--.|+-| .+=...|.++|.+ . ||+|.++.++...+.+..
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k-~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRD-VGEIETHLVISQAARQTLAH 46 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHh-hcCCeEEEEECHHHHHHHHH
Confidence 77777777666 6669999999998 7 999999998877766665
No 292
>PRK07574 formate dehydrogenase; Provisional
Probab=27.25 E-value=4.5e+02 Score=26.16 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=41.9
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhh
Q 041323 257 SVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEIL 336 (433)
Q Consensus 257 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il 336 (433)
.|-.|.+|+++ +.+++.+...|.+++..-+.. .+..... ..+ +..+.+-.+++
T Consensus 194 tVGIvG~G~IG-------~~vA~~l~~fG~~V~~~dr~~-------------~~~~~~~-----~~g--~~~~~~l~ell 246 (385)
T PRK07574 194 TVGIVGAGRIG-------LAVLRRLKPFDVKLHYTDRHR-------------LPEEVEQ-----ELG--LTYHVSFDSLV 246 (385)
T ss_pred EEEEECCCHHH-------HHHHHHHHhCCCEEEEECCCC-------------CchhhHh-----hcC--ceecCCHHHHh
Confidence 37888998887 566777777888865432211 1111111 112 21234567789
Q ss_pred ccCCcceEEecCCchhHHHH
Q 041323 337 SHKSTGAFLSYCGWNSALES 356 (433)
Q Consensus 337 ~~~~v~~~ithgG~~s~~ea 356 (433)
+.+++ ++.|+-.+.-.+.
T Consensus 247 ~~aDv--V~l~lPlt~~T~~ 264 (385)
T PRK07574 247 SVCDV--VTIHCPLHPETEH 264 (385)
T ss_pred hcCCE--EEEcCCCCHHHHH
Confidence 99985 8899886654443
No 293
>PRK06849 hypothetical protein; Provisional
Probab=27.17 E-value=1.3e+02 Score=29.77 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=27.3
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (433)
+++||++-. ...-.+.+|+.|.+ .||+|+++.....
T Consensus 4 ~~~VLI~G~----~~~~~l~iar~l~~-~G~~Vi~~d~~~~ 39 (389)
T PRK06849 4 KKTVLITGA----RAPAALELARLFHN-AGHTVILADSLKY 39 (389)
T ss_pred CCEEEEeCC----CcHHHHHHHHHHHH-CCCEEEEEeCCch
Confidence 467777743 22358999999999 9999999976543
No 294
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=27.15 E-value=73 Score=28.75 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=30.7
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeC
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~ 42 (433)
-|++.-+|+.|-..-.-.||++|.+ ++|+|...+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~-~i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ-EIWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH-hhhhccccch
Confidence 4666669999999999999999999 9999987753
No 295
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.11 E-value=95 Score=32.67 Aligned_cols=53 Identities=11% Similarity=0.222 Sum_probs=37.0
Q ss_pred cceEEecCCchhHHHHHhc----CCceEecccccchhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC
Q 041323 341 TGAFLSYCGWNSALESLSQ----GLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 341 v~~~ithgG~~s~~eal~~----GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
+.++|+-||=||++.+... ++|++++-.. .+|.. ..++.+++.++|.++++++
T Consensus 349 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G--------------~lGFL------~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 349 ISHIISIGGDGTVLRASKLVNGEEIPIICINMG--------------TVGFL------TEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------CCCcC------cccCHHHHHHHHHHHHcCC
Confidence 4579999999999999763 7788877321 12222 2346788888888887654
No 296
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=27.10 E-value=1.1e+02 Score=25.49 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=31.4
Q ss_pred EEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhh
Q 041323 9 VMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (433)
Q Consensus 9 l~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (433)
.++..+..--++|.+-+|...++ +|++|+++.+--....+.
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A-~G~EV~VF~TfwGL~~l~ 47 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAA-MGYEVTVFFTFWGLMALR 47 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeHHHHHHhh
Confidence 34556788889999999999999 999999987633333333
No 297
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=27.08 E-value=1.5e+02 Score=23.98 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=26.4
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcC
Q 041323 258 VLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRP 294 (433)
Q Consensus 258 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~ 294 (433)
|+++++||.+. ..-+..+.++|.+.|.+|.+.+..
T Consensus 1 Ili~~~Gt~Gh--v~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 1 ILIATGGTRGH--VYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp EEEEEESSHHH--HHHHHHHHHHHHHTT-EEEEEETG
T ss_pred CEEEEcCChhH--HHHHHHHHHHHhccCCeEEEeecc
Confidence 57889998873 344567899999999999877653
No 298
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=26.97 E-value=1.1e+02 Score=24.49 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=28.9
Q ss_pred EEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 041323 9 VMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (433)
Q Consensus 9 l~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (433)
+++.++..++-.-+..+++.|++ +|+.|..+..+..
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~ 37 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAE-QGYAVVAFDYPGH 37 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHH-TTEEEEEESCTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-CCCEEEEEecCCC
Confidence 56666777777889999999999 9999999865444
No 299
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=26.95 E-value=77 Score=30.27 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=28.9
Q ss_pred CCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 4 ENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 4 ~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
.+|+|.|+-.+..|. .+|+.|++ .||+|++....
T Consensus 3 ~~m~I~iiG~G~~G~-----~lA~~l~~-~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGS-----TLAGLASA-NGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHHH-----HHHHHHHH-CCCEEEEEeCC
Confidence 468999998888876 79999999 99999988743
No 300
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=26.47 E-value=2.1e+02 Score=24.70 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=63.7
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhh
Q 041323 257 SVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEIL 336 (433)
Q Consensus 257 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il 336 (433)
.|-.+.+|.++ +++++.++..|.+++..-+... +..... ..+ + .+.+-.++|
T Consensus 38 tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~-------------~~~~~~-----~~~--~-~~~~l~ell 89 (178)
T PF02826_consen 38 TVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK-------------PEEGAD-----EFG--V-EYVSLDELL 89 (178)
T ss_dssp EEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH-------------HHHHHH-----HTT--E-EESSHHHHH
T ss_pred EEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC-------------hhhhcc-----ccc--c-eeeehhhhc
Confidence 37777888776 6777778888998776654320 011000 112 2 566888899
Q ss_pred ccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcce-EEEccCCCCcccHHHHHHHHH
Q 041323 337 SHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMA-VELTRGVQSTIVGHDVKNVIE 407 (433)
Q Consensus 337 ~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g-~~l~~~~~~~~~~~~l~~ai~ 407 (433)
+.+++ ++.|+-.+. ...+..|+..+.. ++-| +.++..+.+.++++.|.++++
T Consensus 90 ~~aDi--v~~~~plt~----------------~T~~li~~~~l~~-mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 90 AQADI--VSLHLPLTP----------------ETRGLINAEFLAK-MKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp HH-SE--EEE-SSSST----------------TTTTSBSHHHHHT-STTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred chhhh--hhhhhcccc----------------ccceeeeeeeeec-cccceEEEeccchhhhhhhHHHHHHh
Confidence 99995 777754321 1356678888888 5755 666666667788888887775
No 301
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.27 E-value=2.7e+02 Score=23.93 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=52.4
Q ss_pred chhHHHHHhcCCceEeccccc--chhhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 041323 350 WNSALESLSQGLPMIGWPIAA--EQTYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEAGKGQEMKAKAEKIG 427 (433)
Q Consensus 350 ~~s~~eal~~GvP~i~~P~~~--dQ~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~l~ 427 (433)
.-|+.|-..+|+=-+. |.-+ =+..|+.+.++ .|.=..+-- +..+.++|..+.++=++|+ +.++++..+.++.
T Consensus 87 a~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~~r-FgfPfI~aV---kg~~k~~Il~a~~~Rl~n~-~e~E~~tAl~eI~ 160 (176)
T COG3195 87 AESTSEQASAGLDRLS-PEEFARFTELNAAYVER-FGFPFIIAV---KGNTKDTILAAFERRLDND-REQEFATALAEIE 160 (176)
T ss_pred hhhHHHHHhcCcccCC-HHHHHHHHHHHHHHHHh-cCCceEEee---cCCCHHHHHHHHHHHhccc-HHHHHHHHHHHHH
Confidence 3467777777765541 2111 14569999999 599877765 4567899999988888776 5567888887776
Q ss_pred HHHH
Q 041323 428 RQIR 431 (433)
Q Consensus 428 ~~~~ 431 (433)
+..+
T Consensus 161 rIA~ 164 (176)
T COG3195 161 RIAL 164 (176)
T ss_pred HHHH
Confidence 6543
No 302
>PRK05920 aromatic acid decarboxylase; Validated
Probab=26.10 E-value=1.2e+02 Score=27.12 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=33.7
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhh
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (433)
.||++--.++.+ .+=.+.+.+.|.+ .||+|+++.++.-.+.+..
T Consensus 4 krIllgITGsia-a~ka~~lvr~L~~-~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 4 KRIVLAITGASG-AIYGVRLLECLLA-ADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CEEEEEEeCHHH-HHHHHHHHHHHHH-CCCEEEEEEChhHHHHHHH
Confidence 467666555444 4788999999999 9999999998776665544
No 303
>PRK06932 glycerate dehydrogenase; Provisional
Probab=26.00 E-value=3.2e+02 Score=26.24 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=37.9
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhh
Q 041323 257 SVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEIL 336 (433)
Q Consensus 257 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il 336 (433)
.+..|.+|+++ +++++.++..|.+++.. .... .. .. ...+.+-.++|
T Consensus 149 tvgIiG~G~IG-------~~va~~l~~fg~~V~~~-~~~~-------------~~-----------~~-~~~~~~l~ell 195 (314)
T PRK06932 149 TLGVFGKGCLG-------TEVGRLAQALGMKVLYA-EHKG-------------AS-----------VC-REGYTPFEEVL 195 (314)
T ss_pred EEEEECCCHHH-------HHHHHHHhcCCCEEEEE-CCCc-------------cc-----------cc-ccccCCHHHHH
Confidence 47888998887 55666666778886542 2110 00 00 11456778899
Q ss_pred ccCCcceEEecCCchh
Q 041323 337 SHKSTGAFLSYCGWNS 352 (433)
Q Consensus 337 ~~~~v~~~ithgG~~s 352 (433)
+.+++ ++.|+-.+.
T Consensus 196 ~~sDi--v~l~~Plt~ 209 (314)
T PRK06932 196 KQADI--VTLHCPLTE 209 (314)
T ss_pred HhCCE--EEEcCCCCh
Confidence 99995 787876543
No 304
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=25.87 E-value=2.3e+02 Score=27.26 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=33.7
Q ss_pred chhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCC
Q 041323 243 PEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPP 295 (433)
Q Consensus 243 ~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~ 295 (433)
.+++.++++.....-+-.-++||.++ ..++.+-.+-|.+.+.++...
T Consensus 4 r~~ileil~~Y~~~~i~Iat~gSHSa------L~Il~GAK~EGF~Ti~v~~~g 50 (361)
T COG1759 4 RKEILEILENYDLEDITIATIGSHSA------LQILDGAKEEGFRTIAVCQRG 50 (361)
T ss_pred HHHHHHHHHhccccceEEEEeecchH------HHHhhhHHhcCCcEEEEEecC
Confidence 45778888877544466778888875 566777788888888777644
No 305
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=25.86 E-value=82 Score=22.43 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCcEEEEEe
Q 041323 23 LALAKQIHRSTGFKITIAN 41 (433)
Q Consensus 23 l~LA~~L~~~rGh~Vt~~~ 41 (433)
|..|..|++ +|++|+++=
T Consensus 9 l~aA~~L~~-~g~~v~v~E 26 (68)
T PF13450_consen 9 LAAAYYLAK-AGYRVTVFE 26 (68)
T ss_dssp HHHHHHHHH-TTSEEEEEE
T ss_pred HHHHHHHHH-CCCcEEEEe
Confidence 678999999 999999984
No 306
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=25.81 E-value=1e+02 Score=22.48 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCc
Q 041323 20 IPFLALAKQIHRSTGFKITIANTPLN 45 (433)
Q Consensus 20 ~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (433)
..-+.+|..|++ +|.+||++.....
T Consensus 9 ~ig~E~A~~l~~-~g~~vtli~~~~~ 33 (80)
T PF00070_consen 9 FIGIELAEALAE-LGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHH-TTSEEEEEESSSS
T ss_pred HHHHHHHHHHHH-hCcEEEEEeccch
Confidence 345899999999 9999999985443
No 307
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=25.66 E-value=1.6e+02 Score=23.60 Aligned_cols=37 Identities=11% Similarity=0.031 Sum_probs=33.0
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPL 44 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (433)
||++..-++.|-......||+.|++ +|.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~-~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAE-KGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCc
Confidence 4788889999999999999999999 999999887654
No 308
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=25.61 E-value=1.7e+02 Score=24.33 Aligned_cols=45 Identities=11% Similarity=0.089 Sum_probs=37.3
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhh
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (433)
+.+|++-+....+|-.=---++..|.. .|++|.........+.+.
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~-~GfeVi~LG~~v~~e~~v 45 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTN-AGFNVVNLGVLSPQEEFI 45 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHH-CCCEEEECCCCCCHHHHH
Confidence 358999999999999988888999999 999999998755544433
No 309
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.57 E-value=1e+02 Score=25.34 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHHHhcCCcEEEEEeCCCch
Q 041323 17 GHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (433)
Q Consensus 17 GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~ 46 (433)
=.+--.+-+...|.. +|++|+++.++...
T Consensus 16 ~qissaiYls~klkk-kgf~v~VaateAa~ 44 (148)
T COG4081 16 PQISSAIYLSHKLKK-KGFDVTVAATEAAL 44 (148)
T ss_pred ccchHHHHHHHHhhc-cCccEEEecCHhhh
Confidence 455667888999999 99999999876443
No 310
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=25.48 E-value=3.8e+02 Score=27.28 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=50.1
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCc--hhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCCC
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN--IQYLQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPNT 84 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~~ 84 (433)
||=|+-+++.| |=.||+-|++ +||+|+=.-...+ .+++++ .|+.... +.. +...
T Consensus 9 ~iHfIGIgG~G----MsglA~iL~~-~G~~VsGSD~~~~~~t~~L~~------------~G~~i~~-gh~------~~ni 64 (459)
T COG0773 9 KIHFIGIGGIG----MSGLAEILLN-LGYKVSGSDLAESPMTQRLEA------------LGIEIFI-GHD------AENI 64 (459)
T ss_pred eEEEEeecccc----HHHHHHHHHh-CCCceECccccccHHHHHHHH------------CCCeEeC-CCC------HHHc
Confidence 67777777777 7899999999 9999985443333 234444 5666441 211 1111
Q ss_pred CCCccEEEEcCCcc--cHHHHHHHhCCceEE
Q 041323 85 ENRELVFGSSTFFG--WAVDVAKSAGTTNVT 113 (433)
Q Consensus 85 ~~~~~~vv~d~~~~--~a~~vA~~lgiP~v~ 113 (433)
.....+|++..+.- .-...|++.|||++.
T Consensus 65 ~~~~~VV~s~Ai~~~NpEi~~A~e~~ipi~~ 95 (459)
T COG0773 65 LDADVVVVSNAIKEDNPEIVAALERGIPVIS 95 (459)
T ss_pred CCCceEEEecccCCCCHHHHHHHHcCCCeEc
Confidence 12222555555543 444568889999876
No 311
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=25.29 E-value=1e+02 Score=27.17 Aligned_cols=39 Identities=10% Similarity=-0.016 Sum_probs=31.3
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCch
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~ 46 (433)
||++--.|+.|=+.-.+++.++|.+ .|++|+++.++.-.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~-~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVD-EGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHh-CcCEEEEEEchhHH
Confidence 5667667777766666799999999 99999998877654
No 312
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=25.15 E-value=1.2e+02 Score=28.12 Aligned_cols=37 Identities=8% Similarity=-0.035 Sum_probs=31.8
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
|.|.+.-=|+-|-.+-...||..|++ +|++|.++--.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~-~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAK-LGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHh-CCCeEEEEecC
Confidence 45777777888999999999999999 99999988543
No 313
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=24.98 E-value=1.2e+02 Score=30.10 Aligned_cols=39 Identities=13% Similarity=0.303 Sum_probs=30.1
Q ss_pred CCCCCcEEEEeCC-CCcccHHHHHHHHHHHHhcCCc---EEEEE
Q 041323 1 MGSENEHTVMLPL-MAHGHLIPFLALAKQIHRSTGF---KITIA 40 (433)
Q Consensus 1 m~~~~~~il~~~~-~~~GHv~P~l~LA~~L~~~rGh---~Vt~~ 40 (433)
|-...+||++++. -+.||....-+|+++|.+ +|. +|..+
T Consensus 1 ~~~~~~~vlil~~~~G~GH~~aA~al~~~~~~-~~~~~~~~~~~ 43 (391)
T PRK13608 1 MVTQNKKILIITGSFGNGHMQVTQSIVNQLND-MNLDHLSVIEH 43 (391)
T ss_pred CCCCCceEEEEECCCCchHHHHHHHHHHHHHh-hCCCCceEEEe
Confidence 4455679999984 466999999999999999 864 45543
No 314
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=24.83 E-value=1e+02 Score=29.44 Aligned_cols=134 Identities=14% Similarity=0.033 Sum_probs=72.6
Q ss_pred cEEE-EEeCCCC--CCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecc--cC
Q 041323 257 SVLY-ISFGSQN--TISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNW--AP 331 (433)
Q Consensus 257 ~vv~-vs~GS~~--~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p 331 (433)
+.|. +-.||.. ..+.+.+.++++.+.+.+.++++..|+.. + ....+.+.+...++.+.+- +.
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~------e-------~~~~~~i~~~~~~~~l~g~~sL~ 245 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH------E-------EQRAKRLAEGFPYVEVLPKLSLE 245 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH------H-------HHHHHHHHccCCcceecCCCCHH
Confidence 4444 4444443 35678899999999877888766545321 1 0111111111122323232 33
Q ss_pred hH-HhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHHHHHHHhcc-eEEEc--cCCCCcccHHHHHHHHH
Q 041323 332 QL-EILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGM-AVELT--RGVQSTIVGHDVKNVIE 407 (433)
Q Consensus 332 q~-~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~-g~~l~--~~~~~~~~~~~l~~ai~ 407 (433)
+. .++++++ +||+. ..|.++=|.+.|+|+|++=-..|...+.- +|- ...+. ...-.+++++++.++++
T Consensus 246 elaali~~a~--l~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p-----~~~~~~~~~~~~~cm~~I~~e~V~~~~~ 317 (322)
T PRK10964 246 QVARVLAGAK--AVVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGG-----YGKNQHACRSPGKSMADLSAETVFQKLE 317 (322)
T ss_pred HHHHHHHhCC--EEEec-CCcHHHHHHHhCCCEEEEECCCCcccccC-----CCCCceeecCCCcccccCCHHHHHHHHH
Confidence 33 4778888 48887 46788889999999997621222111110 111 01111 11124688999999998
Q ss_pred HHhc
Q 041323 408 MVMD 411 (433)
Q Consensus 408 ~vl~ 411 (433)
++|+
T Consensus 318 ~~l~ 321 (322)
T PRK10964 318 TLIS 321 (322)
T ss_pred HHhh
Confidence 8764
No 315
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=24.67 E-value=74 Score=31.70 Aligned_cols=27 Identities=30% Similarity=0.575 Sum_probs=21.7
Q ss_pred ccHHHHH---HHHHHHHhcCCcEEEEEeCCC
Q 041323 17 GHLIPFL---ALAKQIHRSTGFKITIANTPL 44 (433)
Q Consensus 17 GHv~P~l---~LA~~L~~~rGh~Vt~~~~~~ 44 (433)
||+.|++ .+|+-++. +||+|.|++.-+
T Consensus 17 GH~~~~l~ADv~aR~~r~-~G~~v~~~tGtD 46 (391)
T PF09334_consen 17 GHLYPYLAADVLARYLRL-RGHDVLFVTGTD 46 (391)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT-EEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHHhh-cccceeeEEecc
Confidence 9999888 47888888 999999998533
No 316
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=24.58 E-value=1.1e+02 Score=26.89 Aligned_cols=41 Identities=12% Similarity=0.176 Sum_probs=30.1
Q ss_pred EEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhh
Q 041323 8 TVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (433)
Q Consensus 8 il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (433)
|++--.|+-|-.. ...|.+.|.+ +|++|.++.++.-.+.+.
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~-~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKE-AGVEVHLVISDWAKETIK 42 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHH-CCCEEEEEECccHHHHHH
Confidence 4444444555433 4899999999 999999999887776654
No 317
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.45 E-value=4.4e+02 Score=25.11 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=30.8
Q ss_pred CeEEecccChH---HhhccCCcceEEecCCchhHHHHHhcCCceE
Q 041323 323 GLLVRNWAPQL---EILSHKSTGAFLSYCGWNSALESLSQGLPMI 364 (433)
Q Consensus 323 ~v~~~~~~pq~---~il~~~~v~~~ithgG~~s~~eal~~GvP~i 364 (433)
.+++.+|+||. .+|.-|++ .+| =|--|..-|..+|+|.+
T Consensus 239 rvvklPFvpqddyd~LL~lcD~-n~V--RGEDSFVRAq~agkPfl 280 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF-NLV--RGEDSFVRAQLAGKPFL 280 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc-cee--ecchHHHHHHHcCCCcE
Confidence 45667999976 48888886 333 37789999999999998
No 318
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=24.44 E-value=1.3e+02 Score=28.51 Aligned_cols=39 Identities=10% Similarity=0.015 Sum_probs=33.7
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCc
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLN 45 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (433)
|+|++.-=|+.|-..-.+.||..|++ +|++|.++-....
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~-~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALAR-RGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence 45888888999999999999999999 9999998865433
No 319
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=24.34 E-value=4.7e+02 Score=24.50 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCcEEEEEeCCC
Q 041323 24 ALAKQIHRSTGFKITIANTPL 44 (433)
Q Consensus 24 ~LA~~L~~~rGh~Vt~~~~~~ 44 (433)
++|-+++. .||+|.++-|..
T Consensus 35 ~mAiefAe-AGHDVVLaePn~ 54 (340)
T COG4007 35 RMAIEFAE-AGHDVVLAEPNR 54 (340)
T ss_pred HHHHHHHH-cCCcEEeecCCc
Confidence 58899999 999999996533
No 320
>PRK13059 putative lipid kinase; Reviewed
Probab=24.32 E-value=3e+02 Score=26.01 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=21.2
Q ss_pred eEEecCCchhHHHHH------hcCCceEeccc
Q 041323 343 AFLSYCGWNSALESL------SQGLPMIGWPI 368 (433)
Q Consensus 343 ~~ithgG~~s~~eal------~~GvP~i~~P~ 368 (433)
.+|.-||=||+.|++ ..++|+-++|.
T Consensus 59 ~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 59 YILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred EEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 699999999988874 23588899996
No 321
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=24.31 E-value=1.5e+02 Score=28.21 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=32.0
Q ss_pred CCCCCcE-EEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 1 MGSENEH-TVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 1 m~~~~~~-il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
|+ ||+ |.|..=|+-|-.+-...||..|++ .|++|.++-..
T Consensus 1 ~~--~~~~iai~~KGGvGKTt~~~nLa~~la~-~g~kVLliD~D 41 (295)
T PRK13234 1 MS--KLRQIAFYGKGGIGKSTTSQNTLAALVE-MGQKILIVGCD 41 (295)
T ss_pred CC--cceEEEEECCCCccHHHHHHHHHHHHHH-CCCeEEEEecc
Confidence 55 554 444567788999999999999999 99999999543
No 322
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=24.17 E-value=1.6e+02 Score=28.82 Aligned_cols=82 Identities=10% Similarity=0.083 Sum_probs=47.3
Q ss_pred CCCeEE-ecccChHHhhccCCcceEEecCCchhHHHHHhcCCceEecccccchhhHHH----HHHHHhcceEEEccCCCC
Q 041323 321 KQGLLV-RNWAPQLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGWPIAAEQTYNSK----MLVEEMGMAVELTRGVQS 395 (433)
Q Consensus 321 ~~~v~~-~~~~pq~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~P~~~dQ~~na~----~~~~~~G~g~~l~~~~~~ 395 (433)
..++.. .+..+-.++|..+++ +||-- ...+.|.+..++|+|....-.|++...+ -.++ ..-|..+.
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~-~~pg~~~~----- 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEE-DLPGPIVY----- 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTT-SSSS-EES-----
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHh-hCCCceeC-----
Confidence 345544 345567789999995 99987 4588899999999997665444432210 0111 13333332
Q ss_pred cccHHHHHHHHHHHhcCC
Q 041323 396 TIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 396 ~~~~~~l~~ai~~vl~~~ 413 (433)
+.++|.++|..+++++
T Consensus 322 --~~~eL~~~i~~~~~~~ 337 (369)
T PF04464_consen 322 --NFEELIEAIENIIENP 337 (369)
T ss_dssp --SHHHHHHHHTTHHHHH
T ss_pred --CHHHHHHHHHhhhhCC
Confidence 5799999999888654
No 323
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=24.15 E-value=3.6e+02 Score=28.42 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=21.1
Q ss_pred ceEEecCC------chhHHHHHhcCCceEecc
Q 041323 342 GAFLSYCG------WNSALESLSQGLPMIGWP 367 (433)
Q Consensus 342 ~~~ithgG------~~s~~eal~~GvP~i~~P 367 (433)
+++++|.| .+.+.+|.+.++|+|++.
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 35777877 458899999999999884
No 324
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=24.14 E-value=6.3e+02 Score=25.35 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=20.4
Q ss_pred ceEEecCCc------hhHHHHHhcCCceEec
Q 041323 342 GAFLSYCGW------NSALESLSQGLPMIGW 366 (433)
Q Consensus 342 ~~~ithgG~------~s~~eal~~GvP~i~~ 366 (433)
+++++|+|- +.+.+|...++|+|++
T Consensus 65 gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 65 VAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred EEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 357777774 4788999999999998
No 325
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=24.03 E-value=80 Score=32.30 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=25.2
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeC
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~ 42 (433)
+||+++--+..| |.-|.+|++ +||+||+.=.
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~-~g~~vt~~ea 31 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELAD-AGYDVTLYEA 31 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHh-CCCceEEEec
Confidence 477777766555 788999999 9999999854
No 326
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=23.94 E-value=2.9e+02 Score=26.44 Aligned_cols=29 Identities=3% Similarity=-0.263 Sum_probs=19.9
Q ss_pred EEEEcCCcccHHHHHHHhCCceEEEecch
Q 041323 90 VFGSSTFFGWAVDVAKSAGTTNVTFITGG 118 (433)
Q Consensus 90 ~vv~d~~~~~a~~vA~~lgiP~v~~~~~~ 118 (433)
.++.-.-+......|+++++|+++..-+.
T Consensus 203 ~lvnkiGT~~lA~~A~e~~~Pf~v~aesy 231 (301)
T COG1184 203 ALVNKIGTSPLALAARELRVPFYVVAESY 231 (301)
T ss_pred cEEeccchHHHHHHHHHhCCCEEEEeeee
Confidence 44444445556668999999999875543
No 327
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=23.91 E-value=78 Score=29.65 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCcEEEEEeCCCchhhhhh
Q 041323 24 ALAKQIHRSTGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 24 ~LA~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (433)
-+|..|++ .||+|++++-....+.+.+
T Consensus 5 ~~a~~L~~-~G~~V~l~~r~~~~~~i~~ 31 (293)
T TIGR00745 5 LYGAYLAR-AGHDVTLLARGEQLEALNQ 31 (293)
T ss_pred HHHHHHHh-CCCcEEEEecHHHHHHHHH
Confidence 47889999 9999999986433444544
No 328
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=23.75 E-value=1.5e+02 Score=30.60 Aligned_cols=52 Identities=12% Similarity=0.264 Sum_probs=36.3
Q ss_pred cceEEecCCchhHHHHHhc----CCceEecccccchhhHHHHHHHHhc-ceEEEccCCCCcccHHHHHHHHHHHhcCC
Q 041323 341 TGAFLSYCGWNSALESLSQ----GLPMIGWPIAAEQTYNSKMLVEEMG-MAVELTRGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 341 v~~~ithgG~~s~~eal~~----GvP~i~~P~~~dQ~~na~~~~~~~G-~g~~l~~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
++++|+=||=||++.|... ++|++++- +| +|..- .++.+++.++|.++++++
T Consensus 263 ~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN---------------~G~LGFLt------~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 263 VDLVITLGGDGTVLWAASMFKGPVPPVVPFS---------------MGSLGFMT------PFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEe---------------CCCcceec------ccCHHHHHHHHHHHHcCC
Confidence 4479999999999999764 56777662 12 44432 246777888888887654
No 329
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=23.67 E-value=3.7e+02 Score=23.12 Aligned_cols=84 Identities=12% Similarity=0.068 Sum_probs=44.2
Q ss_pred eeEecchhccchhhhhcccccCCCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCCC
Q 041323 187 EMLCKTAEDIEPGALQWPRNYTKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGSQ 266 (433)
Q Consensus 187 ~~l~~t~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~ 266 (433)
..++-+-++.-..+...++..+ |.+..+|-..+.. .....+++.+.+....++ +|+|++|+-
T Consensus 49 v~llG~~~~~~~~~~~~l~~~y-p~l~i~g~~~g~~----------------~~~~~~~i~~~I~~~~pd-iv~vglG~P 110 (171)
T cd06533 49 VFLLGAKPEVLEKAAERLRARY-PGLKIVGYHHGYF----------------GPEEEEEIIERINASGAD-ILFVGLGAP 110 (171)
T ss_pred EEEECCCHHHHHHHHHHHHHHC-CCcEEEEecCCCC----------------ChhhHHHHHHHHHHcCCC-EEEEECCCC
Confidence 3344444333333334445544 6777776433222 112334577888777655 999999875
Q ss_pred CCCCHHHHHHHHHHHH-hCCCeEEEEEcC
Q 041323 267 NTISSSQTMELAIGLE-ASAKSFLWVIRP 294 (433)
Q Consensus 267 ~~~~~~~~~~~~~al~-~~~~~~l~~~~~ 294 (433)
- .|. ++.... ..+..++..+|.
T Consensus 111 k---QE~---~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 111 K---QEL---WIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred H---HHH---HHHHHHHHCCCCEEEEece
Confidence 4 222 222222 345666666665
No 330
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=23.67 E-value=4e+02 Score=29.45 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=25.6
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEe
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIAN 41 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (433)
||+|+-.+..| +=.||+.|++ +|++|+..-
T Consensus 6 ~i~viG~G~sG----~salA~~L~~-~G~~V~~sD 35 (809)
T PRK14573 6 FYHFIGIGGIG----MSALAHILLD-RGYSVSGSD 35 (809)
T ss_pred eEEEEEecHHh----HHHHHHHHHH-CCCeEEEEC
Confidence 78999998888 5567999999 999999764
No 331
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=23.58 E-value=2.1e+02 Score=22.74 Aligned_cols=37 Identities=8% Similarity=0.093 Sum_probs=30.3
Q ss_pred CCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhh
Q 041323 14 MAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 14 ~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (433)
-..|+-..++.+++.+++ +|..|..+|.....+..+.
T Consensus 61 s~sg~~~~~~~~~~~ak~-~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 61 SYSGETRELIELLRFAKE-RGAPVILITSNSESPLARL 97 (131)
T ss_dssp ESSSTTHHHHHHHHHHHH-TTSEEEEEESSTTSHHHHH
T ss_pred eccccchhhhhhhHHHHh-cCCeEEEEeCCCCCchhhh
Confidence 367888999999999999 9999999987666555554
No 332
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=23.47 E-value=1.3e+02 Score=27.87 Aligned_cols=37 Identities=11% Similarity=-0.003 Sum_probs=32.2
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
|.|.+.-=|+-|...-...||..|++ +|++|.++-..
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~-~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAK-RGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHH-CCCcEEEEecC
Confidence 45777777889999999999999999 99999988654
No 333
>PRK06270 homoserine dehydrogenase; Provisional
Probab=23.45 E-value=6.9e+02 Score=24.24 Aligned_cols=59 Identities=14% Similarity=0.242 Sum_probs=36.7
Q ss_pred ChHHhhccCCcceEEe------cCC---chhHHHHHhcCCceEe---cccccchhhHHHHHHHHhcceEEEc
Q 041323 331 PQLEILSHKSTGAFLS------YCG---WNSALESLSQGLPMIG---WPIAAEQTYNSKMLVEEMGMAVELT 390 (433)
Q Consensus 331 pq~~il~~~~v~~~it------hgG---~~s~~eal~~GvP~i~---~P~~~dQ~~na~~~~~~~G~g~~l~ 390 (433)
+..++|..+++.++|- |+| ..-+.+++.+|+++|+ -|...+-..-...+.+. |+.+..+
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEEe
Confidence 5566776666555665 443 4456899999999998 47654333333344454 7766554
No 334
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=23.43 E-value=3.4e+02 Score=23.17 Aligned_cols=27 Identities=11% Similarity=0.243 Sum_probs=20.2
Q ss_pred ceEEecCC------chhHHHHHhcCCceEeccc
Q 041323 342 GAFLSYCG------WNSALESLSQGLPMIGWPI 368 (433)
Q Consensus 342 ~~~ithgG------~~s~~eal~~GvP~i~~P~ 368 (433)
.++++|.| .+++.+|...++|+|++.-
T Consensus 66 ~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 66 GVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred eEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 35777776 3578889999999998864
No 335
>PRK11914 diacylglycerol kinase; Reviewed
Probab=23.28 E-value=5.9e+02 Score=24.07 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.2
Q ss_pred eEEecCCchhHHHHH----hcCCceEeccc
Q 041323 343 AFLSYCGWNSALESL----SQGLPMIGWPI 368 (433)
Q Consensus 343 ~~ithgG~~s~~eal----~~GvP~i~~P~ 368 (433)
.+|.-||=||+.|++ ..++|+-++|.
T Consensus 67 ~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 689999999999987 34789999996
No 336
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=23.16 E-value=1.8e+02 Score=27.84 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=34.9
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCch
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~ 46 (433)
..+|.+.-.|+.|--.=.=+|.++|.+ +||+|-++...+..
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDPSS 91 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRE-RGHRVAVLAVDPSS 91 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHH-CCcEEEEEEECCCC
Confidence 457778889999999999999999999 99999888865554
No 337
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=22.98 E-value=4.7e+02 Score=22.74 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=24.2
Q ss_pred hHHhhccCCcceEEecCCchhHHHHHh---------cCCceEecc
Q 041323 332 QLEILSHKSTGAFLSYCGWNSALESLS---------QGLPMIGWP 367 (433)
Q Consensus 332 q~~il~~~~v~~~ithgG~~s~~eal~---------~GvP~i~~P 367 (433)
...+|-..+...++-=||.||+-|.+. +.+|++++=
T Consensus 89 Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 89 RKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 334555444446677788999988733 489999764
No 338
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=22.98 E-value=4e+02 Score=21.34 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHHHhC--CCeEEEE
Q 041323 257 SVLYISFGSQNTISSSQTMELAIGLEAS--AKSFLWV 291 (433)
Q Consensus 257 ~vv~vs~GS~~~~~~~~~~~~~~al~~~--~~~~l~~ 291 (433)
.+|+++.||......+.+.++.+.+++. ...+-+.
T Consensus 3 ~lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~a 39 (126)
T PRK00923 3 GLLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVG 39 (126)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4899999997543456678888888763 3345444
No 339
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=22.97 E-value=1.4e+02 Score=28.87 Aligned_cols=39 Identities=3% Similarity=0.003 Sum_probs=29.0
Q ss_pred cEEEEeCC--CCcccH-HHHHHHHHHHHhcC--CcEEEEEeCCCc
Q 041323 6 EHTVMLPL--MAHGHL-IPFLALAKQIHRST--GFKITIANTPLN 45 (433)
Q Consensus 6 ~~il~~~~--~~~GHv-~P~l~LA~~L~~~r--Gh~Vt~~~~~~~ 45 (433)
|||+++.. +..|=+ .=++.|+++|.+ + ||+|++++....
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~-~~~g~~v~v~~~~~~ 44 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEE-SKINCEMFFFCRNDK 44 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhh-cCcceeEEEEecCCC
Confidence 57888764 233555 556889999999 9 899999886543
No 340
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=22.70 E-value=1e+02 Score=26.82 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=30.9
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhh
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (433)
||++.-.++ ...+-...|.+.|.+ +|++|.++.++.-.+.+.
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~-~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTK-LGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHH-CCCEEEEEEChHHHhhcc
Confidence 455555554 455667799999999 999999998876655544
No 341
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=22.62 E-value=2.8e+02 Score=21.12 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=23.0
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhC--CCeEEEE
Q 041323 258 VLYISFGSQNTISSSQTMELAIGLEAS--AKSFLWV 291 (433)
Q Consensus 258 vv~vs~GS~~~~~~~~~~~~~~al~~~--~~~~l~~ 291 (433)
+|+|+.||........+.++.+.+++. +..+-+.
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~a 37 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELA 37 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 789999998754455677788888663 3444444
No 342
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=22.59 E-value=1.7e+02 Score=25.11 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=22.0
Q ss_pred CcEEEEEeCCCCCCCHHHHHHHHHHHHhC
Q 041323 256 GSVLYISFGSQNTISSSQTMELAIGLEAS 284 (433)
Q Consensus 256 ~~vv~vs~GS~~~~~~~~~~~~~~al~~~ 284 (433)
.-.+|+++||....+.+.+...++.|.+.
T Consensus 7 ~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 7 SALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 34689999999865666777778888764
No 343
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.55 E-value=3.8e+02 Score=27.33 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=26.1
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeC
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~ 42 (433)
.+|+++-.|..| +.+|+.|++ +|++|++.-.
T Consensus 16 ~~v~v~G~G~sG-----~a~a~~L~~-~G~~V~~~D~ 46 (473)
T PRK00141 16 GRVLVAGAGVSG-----RGIAAMLSE-LGCDVVVADD 46 (473)
T ss_pred CeEEEEccCHHH-----HHHHHHHHH-CCCEEEEECC
Confidence 479999988888 389999999 9999888753
No 344
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.41 E-value=4.4e+02 Score=22.60 Aligned_cols=85 Identities=12% Similarity=0.107 Sum_probs=46.8
Q ss_pred ceeEecchhccchhhhhcccccCCCCeeEeCccCCcccccccccccccCCCCCCCCCchhHHHhhhcCCCCcEEEEEeCC
Q 041323 186 YEMLCKTAEDIEPGALQWPRNYTKLPVWTIGPLLPQSYLKKSFFNLQQHSGKNPGVNPEKIIEWLDLHHPGSVLYISFGS 265 (433)
Q Consensus 186 ~~~l~~t~~~le~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS 265 (433)
...++-+-++.-..+...++..+ |.+..+|-..+.. .....+++.+.+....++ +|+|.+|+
T Consensus 50 ~ifllG~~~~~~~~~~~~l~~~y-P~l~ivg~~~g~f----------------~~~~~~~i~~~I~~~~pd-iv~vglG~ 111 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAANLRRRY-PGLRIVGYHHGYF----------------DEEEEEAIINRINASGPD-IVFVGLGA 111 (172)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHC-CCeEEEEecCCCC----------------ChhhHHHHHHHHHHcCCC-EEEEECCC
Confidence 34445554443334444555555 6777776444322 113456788888877654 99999987
Q ss_pred CCCCCHHHHHHHHHHH-HhCCCeEEEEEcC
Q 041323 266 QNTISSSQTMELAIGL-EASAKSFLWVIRP 294 (433)
Q Consensus 266 ~~~~~~~~~~~~~~al-~~~~~~~l~~~~~ 294 (433)
-- .| ..+... ...+..++..+|.
T Consensus 112 Pk---QE---~~~~~~~~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 112 PK---QE---RWIARHRQRLPAGVIIGVGG 135 (172)
T ss_pred CH---HH---HHHHHHHHHCCCCEEEEECc
Confidence 54 22 223333 3456665555554
No 345
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=22.39 E-value=2.3e+02 Score=25.78 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=28.8
Q ss_pred hhHHHhhhcCCCC-cEEEEEeCCCCCC-------C--HHHHHHHHHHHHhCCCeEEEEEcCC
Q 041323 244 EKIIEWLDLHHPG-SVLYISFGSQNTI-------S--SSQTMELAIGLEASAKSFLWVIRPP 295 (433)
Q Consensus 244 ~~l~~~l~~~~~~-~vv~vs~GS~~~~-------~--~~~~~~~~~al~~~~~~~l~~~~~~ 295 (433)
..+.+||+....+ ..|++ .|=+... . ...+.++++.+.+.+.++.++.|+.
T Consensus 20 ~~~~~~l~~~~~~~d~l~i-~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 20 AAFLRFLRGEARQADALYI-LGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred HHHHHHHHhhhccCCEEEE-ccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3466777542212 24444 5554321 1 2334556677777788988888875
No 346
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=22.39 E-value=1.3e+02 Score=26.13 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=26.7
Q ss_pred cccHHH-HHHHHHHHHhcCCcEEEEEeCCCchhhhh
Q 041323 16 HGHLIP-FLALAKQIHRSTGFKITIANTPLNIQYLQ 50 (433)
Q Consensus 16 ~GHv~P-~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~ 50 (433)
.||... ...+.+.|++.+||+|.++.++...+.+.
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 377766 88999999851599999999877665444
No 347
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=22.06 E-value=1.9e+02 Score=27.15 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=29.2
Q ss_pred EEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCch
Q 041323 7 HTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNI 46 (433)
Q Consensus 7 ~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~ 46 (433)
+++++..+. | +.|++.++++|++ +|++|+++-..++.
T Consensus 100 ~~llIaGGi-G-iaPl~~l~~~l~~-~~~~v~l~~g~r~~ 136 (281)
T PRK06222 100 TVVCVGGGV-G-IAPVYPIAKALKE-AGNKVITIIGARNK 136 (281)
T ss_pred eEEEEeCcC-c-HHHHHHHHHHHHH-CCCeEEEEEecCCH
Confidence 677777543 4 7999999999999 99999988655544
No 348
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=22.05 E-value=6.7e+02 Score=25.08 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=59.4
Q ss_pred HHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhhccCCcceEEecCCchhHH
Q 041323 275 MELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEILSHKSTGAFLSYCGWNSAL 354 (433)
Q Consensus 275 ~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il~~~~v~~~ithgG~~s~~ 354 (433)
.++++-+......++..+|++ .|-.++..-++ ..-| |..+-++-|+ |..++.
T Consensus 206 ~EIl~ql~~~~~AI~vpVGGG------------GLiaGIat~vk---------~~~p------~vkIIGVEt~-~a~~f~ 257 (457)
T KOG1250|consen 206 LEILEQLKEPDGAIVVPVGGG------------GLIAGIATGVK---------RVGP------HVKIIGVETE-GAHSFN 257 (457)
T ss_pred HHHHHhhcCCCCeEEEecCCc------------hhHHHHHHHHH---------HhCC------CCceEEEeec-CcHHHH
Confidence 566666666655667777754 14344433322 1111 3444355555 678999
Q ss_pred HHHhcCCceE--ecccccch------hhHHHHHHHHhcceEEEccCCCCcccHHHHHHHHHHHhcCC
Q 041323 355 ESLSQGLPMI--GWPIAAEQ------TYNSKMLVEEMGMAVELTRGVQSTIVGHDVKNVIEMVMDEA 413 (433)
Q Consensus 355 eal~~GvP~i--~~P~~~dQ------~~na~~~~~~~G~g~~l~~~~~~~~~~~~l~~ai~~vl~~~ 413 (433)
.++.+|.|+. .++-++|- -.|+.++...+-..+. .++.+++..+|.+++.|+
T Consensus 258 ~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv-------vV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 258 ASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVV-------VVEDDEIAAAILRLFEDE 317 (457)
T ss_pred HHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEE-------EeccHHHHHHHHHHHHhh
Confidence 9999999876 23333432 1244444432222222 346789999999999775
No 349
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=21.95 E-value=1.8e+02 Score=28.37 Aligned_cols=19 Identities=11% Similarity=-0.247 Sum_probs=14.3
Q ss_pred cHHHHHHHhCCceEEEecc
Q 041323 99 WAVDVAKSAGTTNVTFITG 117 (433)
Q Consensus 99 ~a~~vA~~lgiP~v~~~~~ 117 (433)
....+|+.+|+|+++..+.
T Consensus 250 ~lA~~Ak~~~vPfyV~ap~ 268 (339)
T PRK06036 250 THSVLAKEHEIPFYVAAPL 268 (339)
T ss_pred HHHHHHHHhCCCEEEEeec
Confidence 3455788999999997653
No 350
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.89 E-value=2.1e+02 Score=26.97 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=23.8
Q ss_pred HHhhccCCcceEEecCCchhHHHHHh----cCCceEecc
Q 041323 333 LEILSHKSTGAFLSYCGWNSALESLS----QGLPMIGWP 367 (433)
Q Consensus 333 ~~il~~~~v~~~ithgG~~s~~eal~----~GvP~i~~P 367 (433)
..+...++ ++|+=||=||+..++. .++|++++-
T Consensus 37 ~~~~~~~d--~vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 37 EEIGQRAQ--LAIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred HHhCcCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 33333445 6999999999998755 367888773
No 351
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=21.88 E-value=2.1e+02 Score=24.35 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCc
Q 041323 22 FLALAKQIHRSTGFKITIANTPLN 45 (433)
Q Consensus 22 ~l~LA~~L~~~rGh~Vt~~~~~~~ 45 (433)
..++-+.|++ +|+.+.++|...+
T Consensus 92 ~~~~L~~L~~-~g~~~~i~s~~~~ 114 (185)
T TIGR01990 92 IKNLLDDLKK-NNIKIALASASKN 114 (185)
T ss_pred HHHHHHHHHH-CCCeEEEEeCCcc
Confidence 3566788999 9999999986444
No 352
>PRK06242 flavodoxin; Provisional
Probab=21.87 E-value=2.5e+02 Score=23.11 Aligned_cols=49 Identities=8% Similarity=0.033 Sum_probs=26.0
Q ss_pred CchhHHHhhhcCCC-CcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEE
Q 041323 242 NPEKIIEWLDLHHP-GSVLYISFGSQNTISSSQTMELAIGLEASAKSFLW 290 (433)
Q Consensus 242 ~~~~l~~~l~~~~~-~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~ 290 (433)
.++.+..|++.... ...-++.|||...........+.+.++..|.+++=
T Consensus 58 ~~~~~~~fl~~~~~~~~k~~~~f~t~g~~~~~~~~~l~~~l~~~g~~~~~ 107 (150)
T PRK06242 58 FHKSLLKLIEKLPPVSGKKAFIFSTSGLPFLKYHKALKKKLKEKGFEIVG 107 (150)
T ss_pred cCHHHHHHHHhhhhhcCCeEEEEECCCCCcchHHHHHHHHHHHCCCEEEE
Confidence 45567777764321 11223334444433333356667777778877653
No 353
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=21.83 E-value=1.7e+02 Score=23.39 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=29.2
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeC
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANT 42 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~ 42 (433)
...+++++++.. +...++.++.|.+ .|.+++++..
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~-~Gi~~~vi~~ 43 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEE-EGIKAGVIDL 43 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHH-TTCEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHH-cCCceeEEee
Confidence 457899999888 4677999999999 9999988764
No 354
>PLN03139 formate dehydrogenase; Provisional
Probab=21.64 E-value=7.5e+02 Score=24.59 Aligned_cols=70 Identities=11% Similarity=0.013 Sum_probs=39.3
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHhh
Q 041323 257 SVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEIL 336 (433)
Q Consensus 257 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~il 336 (433)
.+-+|.+|.++ +.+++.+...|.+++. +.... .+..... ..++. ...+-.+++
T Consensus 201 tVGIVG~G~IG-------~~vA~~L~afG~~V~~-~d~~~------------~~~~~~~-----~~g~~--~~~~l~ell 253 (386)
T PLN03139 201 TVGTVGAGRIG-------RLLLQRLKPFNCNLLY-HDRLK------------MDPELEK-----ETGAK--FEEDLDAML 253 (386)
T ss_pred EEEEEeecHHH-------HHHHHHHHHCCCEEEE-ECCCC------------cchhhHh-----hcCce--ecCCHHHHH
Confidence 47888998887 5666777778888754 32210 1111111 11221 122566788
Q ss_pred ccCCcceEEecCCchhHHH
Q 041323 337 SHKSTGAFLSYCGWNSALE 355 (433)
Q Consensus 337 ~~~~v~~~ithgG~~s~~e 355 (433)
+.+++ ++.|+-.+.-.+
T Consensus 254 ~~sDv--V~l~lPlt~~T~ 270 (386)
T PLN03139 254 PKCDV--VVINTPLTEKTR 270 (386)
T ss_pred hhCCE--EEEeCCCCHHHH
Confidence 88885 888876544333
No 355
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=21.58 E-value=4.5e+02 Score=24.72 Aligned_cols=35 Identities=17% Similarity=0.020 Sum_probs=22.8
Q ss_pred EEEEEeCCCC--CCCHHHHHHHHHHHHhCCCeEEEEE
Q 041323 258 VLYISFGSQN--TISSSQTMELAIGLEASAKSFLWVI 292 (433)
Q Consensus 258 vv~vs~GS~~--~~~~~~~~~~~~al~~~~~~~l~~~ 292 (433)
|.++..|... ..+......++++|++.|+++...-
T Consensus 3 v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~ 39 (299)
T PRK14571 3 VALLMGGVSREREISLRSGERVKKALEKLGYEVTVFD 39 (299)
T ss_pred EEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEc
Confidence 4444444333 2345667779999999999977663
No 356
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=21.44 E-value=4.2e+02 Score=24.53 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=22.5
Q ss_pred EEEEcCCcc-cHHHHHHHhCCceEEEecch
Q 041323 90 VFGSSTFFG-WAVDVAKSAGTTNVTFITGG 118 (433)
Q Consensus 90 ~vv~d~~~~-~a~~vA~~lgiP~v~~~~~~ 118 (433)
++|.|...- -|..=|.++|||+|.+.=.-
T Consensus 160 l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 160 LFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred EEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 888997655 66677899999999975443
No 357
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=21.44 E-value=5.6e+02 Score=24.70 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=39.0
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHHH-hCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecccChHHh
Q 041323 257 SVLYISFGSQNTISSSQTMELAIGLE-ASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNWAPQLEI 335 (433)
Q Consensus 257 ~vv~vs~GS~~~~~~~~~~~~~~al~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~pq~~i 335 (433)
.+-.|.+|+++ +.+++.+. ..|.+++..-... ++.... ..++ .+.+-.++
T Consensus 147 tvGIiG~G~IG-------~~va~~l~~~fgm~V~~~~~~~--------------~~~~~~-----~~~~---~~~~l~el 197 (323)
T PRK15409 147 TLGIVGMGRIG-------MALAQRAHFGFNMPILYNARRH--------------HKEAEE-----RFNA---RYCDLDTL 197 (323)
T ss_pred EEEEEcccHHH-------HHHHHHHHhcCCCEEEEECCCC--------------chhhHH-----hcCc---EecCHHHH
Confidence 37789999887 55555555 5788876432211 011000 1122 35677889
Q ss_pred hccCCcceEEecCCchh
Q 041323 336 LSHKSTGAFLSYCGWNS 352 (433)
Q Consensus 336 l~~~~v~~~ithgG~~s 352 (433)
|+.+++ ++.|+-.+.
T Consensus 198 l~~sDv--v~lh~plt~ 212 (323)
T PRK15409 198 LQESDF--VCIILPLTD 212 (323)
T ss_pred HHhCCE--EEEeCCCCh
Confidence 999995 888876554
No 358
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=21.34 E-value=1.6e+02 Score=31.94 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=46.8
Q ss_pred EEecccChHH---hhccCCcceEEe--cCCc-hhHHHHHhcCCceEecccccchhhHHHHHHHHhcceEEEccCCCCccc
Q 041323 325 LVRNWAPQLE---ILSHKSTGAFLS--YCGW-NSALESLSQGLPMIGWPIAAEQTYNSKMLVEEMGMAVELTRGVQSTIV 398 (433)
Q Consensus 325 ~~~~~~pq~~---il~~~~v~~~it--hgG~-~s~~eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~~ 398 (433)
+..+++++.+ ++..+++ ++++ .-|+ .++.|++++|+|-..+|+..+- +--..+ +.-|+.++. .+
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv-~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~---~G~~~~-l~~~llv~P-----~d 414 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV-ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEM---AGAAAE-LAEALLVNP-----ND 414 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE-EEecccccccCcccceEEEEcCCCCceEEEecc---cchhHH-hCcCeEECC-----CC
Confidence 3556778775 5566775 3332 2355 4788999997752222222211 111112 234777765 46
Q ss_pred HHHHHHHHHHHhcCC
Q 041323 399 GHDVKNVIEMVMDEA 413 (433)
Q Consensus 399 ~~~l~~ai~~vl~~~ 413 (433)
.++++++|.++++.+
T Consensus 415 ~~~la~ai~~~l~~~ 429 (726)
T PRK14501 415 IEGIAAAIKRALEMP 429 (726)
T ss_pred HHHHHHHHHHHHcCC
Confidence 899999999999864
No 359
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.34 E-value=6.1e+02 Score=25.48 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=26.1
Q ss_pred CCCCCcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 1 MGSENEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 1 m~~~~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
|.-...+|+++-.+..| +..|+.|++ +|++|++.-..
T Consensus 1 ~~~~~~~~~v~G~g~~G-----~~~a~~l~~-~g~~v~~~d~~ 37 (445)
T PRK04308 1 MTFQNKKILVAGLGGTG-----ISMIAYLRK-NGAEVAAYDAE 37 (445)
T ss_pred CCCCCCEEEEECCCHHH-----HHHHHHHHH-CCCEEEEEeCC
Confidence 44334578888776433 456999999 99999987643
No 360
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=21.21 E-value=2.2e+02 Score=25.32 Aligned_cols=99 Identities=12% Similarity=0.113 Sum_probs=58.6
Q ss_pred EEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCCCCCCC---CCCCC
Q 041323 8 TVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFCSLDHD---LPPNT 84 (433)
Q Consensus 8 il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~---l~~~~ 84 (433)
.+++..+..|-..=+|+.++.... +|-+|.++++.-..+.-.....+ ..|+......+++..+. +....
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~-~g~~v~vfkp~iD~R~~~~~V~S-------r~G~~~~A~~i~~~~~i~~~i~~~~ 78 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE-AGMKVLVFKPAIDTRYGVGKVSS-------RIGLSSEAVVIPSDTDIFDEIAALH 78 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH-cCCeEEEEecccccccccceeee-------ccCCcccceecCChHHHHHHHHhcc
Confidence 455557778999999999999999 99999999976554433222111 03444333333221111 11111
Q ss_pred CCC-ccEEEEcCCc-------ccHHHHHHHhCCceEEE
Q 041323 85 ENR-ELVFGSSTFF-------GWAVDVAKSAGTTNVTF 114 (433)
Q Consensus 85 ~~~-~~~vv~d~~~-------~~a~~vA~~lgiP~v~~ 114 (433)
... .+||+.|-.- .-...+|..+|||++..
T Consensus 79 ~~~~~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~ 116 (201)
T COG1435 79 EKPPVDCVLIDEAQFFDEELVYVLNELADRLGIPVICY 116 (201)
T ss_pred cCCCcCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEe
Confidence 111 2488877332 23446789999999985
No 361
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=21.07 E-value=5.8e+02 Score=22.70 Aligned_cols=95 Identities=12% Similarity=-0.018 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHHHhc-CCcEEEEEeCCCchhh-hhhhccCCCCCCCCCCceeEEEcCCCCCCCCCCCCCCCCccEEEEcC
Q 041323 18 HLIPFLALAKQIHRS-TGFKITIANTPLNIQY-LQNTISCANPNSPEKFNVNLVELPFCSLDHDLPPNTENRELVFGSST 95 (433)
Q Consensus 18 Hv~P~l~LA~~L~~~-rGh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~l~~~~~~~~~~vv~d~ 95 (433)
.....|.+|..+.+. .|-+|.|+++...... +++....... ..+.-..++.--+ .-........+-+||.|.
T Consensus 44 kT~~~L~~A~~~i~~i~~~~ILfVgtk~~~~~~V~~~A~~~g~-----~~v~~RWlgGtLT-N~~~~~~~~Pdlliv~dp 117 (196)
T TIGR01012 44 KTDERLRVAAKFLVRIEPEDILVVSARIYGQKPVLKFAKVTGA-----RAIAGRFTPGTFT-NPMQKAFREPEVVVVTDP 117 (196)
T ss_pred HHHHHHHHHHHHHHHhhCCeEEEEecCHHHHHHHHHHHHHhCC-----ceECCeeCCCCCC-CccccccCCCCEEEEECC
Confidence 566788888877763 3778999988765443 2222110000 1111122331000 000011111223888897
Q ss_pred Ccc-cHHHHHHHhCCceEEEecch
Q 041323 96 FFG-WAVDVAKSAGTTNVTFITGG 118 (433)
Q Consensus 96 ~~~-~a~~vA~~lgiP~v~~~~~~ 118 (433)
..- -|..=|.++|||.|.+.=+.
T Consensus 118 ~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 118 RADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred ccccHHHHHHHHcCCCEEEEeeCC
Confidence 654 67778999999999975443
No 362
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.87 E-value=1.9e+02 Score=21.47 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=27.2
Q ss_pred EEEEeCCCCc--ccHHHHHHHHHHHHhcCCcEEEEEe
Q 041323 7 HTVMLPLMAH--GHLIPFLALAKQIHRSTGFKITIAN 41 (433)
Q Consensus 7 ~il~~~~~~~--GHv~P~l~LA~~L~~~rGh~Vt~~~ 41 (433)
+|+++|.... .+..-.+.+|..|.+ .|..|.+-.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~-~g~~v~~d~ 38 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQA-AGVDVLLDD 38 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHH-CCCEEEEEC
Confidence 6888887653 566778899999999 999998754
No 363
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=20.81 E-value=2.5e+02 Score=26.86 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHH--HhCCCeEEEEEcCC
Q 041323 268 TISSSQTMELAIGL--EASAKSFLWVIRPP 295 (433)
Q Consensus 268 ~~~~~~~~~~~~al--~~~~~~~l~~~~~~ 295 (433)
..+.+...++.+++ .+. ++.||.++++
T Consensus 48 gtd~~Ra~dL~~a~a~~dp-i~aI~~~rGG 76 (305)
T PRK11253 48 GTDGERLADLNSLADLTTP-NTIVLAVRGG 76 (305)
T ss_pred CCHHHHHHHHHHHHhcCCC-ccEEEEeccc
Confidence 33556788899988 666 9999999876
No 364
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=20.80 E-value=7.9e+02 Score=23.93 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=26.4
Q ss_pred hHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCC
Q 041323 245 KIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPP 295 (433)
Q Consensus 245 ~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~ 295 (433)
+-.+++.+.- +++.|.-+.+.+ ..+++++.+.+.+++.+.|..
T Consensus 168 ~~~~~l~~~v--d~lqIgAr~~~N------~~LL~~va~~~kPViLk~G~~ 210 (335)
T PRK08673 168 RDVELVAEYV--DILQIGARNMQN------FDLLKEVGKTNKPVLLKRGMS 210 (335)
T ss_pred HHHHHHHHhC--CeEEECcccccC------HHHHHHHHcCCCcEEEeCCCC
Confidence 3344554432 366665555543 456677778889999888753
No 365
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=20.75 E-value=4.2e+02 Score=27.71 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=24.0
Q ss_pred CcceEEecCCchhHHHHHhcCCceEeccccc
Q 041323 340 STGAFLSYCGWNSALESLSQGLPMIGWPIAA 370 (433)
Q Consensus 340 ~v~~~ithgG~~s~~eal~~GvP~i~~P~~~ 370 (433)
.++++|+.||-...... +..+|+|-++..+
T Consensus 64 ~~dviIsrG~ta~~i~~-~~~iPVv~i~~s~ 93 (538)
T PRK15424 64 RCDAIIAAGSNGAYLKS-RLSVPVILIKPSG 93 (538)
T ss_pred CCcEEEECchHHHHHHh-hCCCCEEEecCCH
Confidence 34469999999888887 4679999999753
No 366
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=20.71 E-value=15 Score=20.45 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=13.1
Q ss_pred CchhHHHHHhcCCceEe
Q 041323 349 GWNSALESLSQGLPMIG 365 (433)
Q Consensus 349 G~~s~~eal~~GvP~i~ 365 (433)
|.|++...++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888889998888763
No 367
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=20.56 E-value=1.5e+02 Score=26.05 Aligned_cols=57 Identities=23% Similarity=0.261 Sum_probs=35.0
Q ss_pred EEEEeC---CCC-cccHHHH-HHHHHHHHhcCCcEEEEEeCCCchhhhhhhccCCCCCCCCCCceeEEEcCCC
Q 041323 7 HTVMLP---LMA-HGHLIPF-LALAKQIHRSTGFKITIANTPLNIQYLQNTISCANPNSPEKFNVNLVELPFC 74 (433)
Q Consensus 7 ~il~~~---~~~-~GHv~P~-l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~ 74 (433)
||.++- .|+ .|=+--+ -.|+..|.+ +||+|++.+.......-.. ...|++...++.+
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~-~g~~v~Vyc~~~~~~~~~~----------~y~gv~l~~i~~~ 64 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVS-KGIDVTVYCRSDYYPYKEF----------EYNGVRLVYIPAP 64 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhc-CCceEEEEEccCCCCCCCc----------ccCCeEEEEeCCC
Confidence 555554 333 3444443 468889999 9999999986555422211 1157788877743
No 368
>PLN00016 RNA-binding protein; Provisional
Probab=20.50 E-value=1.2e+02 Score=29.71 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=25.2
Q ss_pred CCcEEEEeC--CCCcccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 4 ENEHTVMLP--LMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 4 ~~~~il~~~--~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
.+++|+++. .|+.|.+- ..|+++|.+ +||+|+.++-.
T Consensus 51 ~~~~VLVt~~~~GatG~iG--~~lv~~L~~-~G~~V~~l~R~ 89 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIG--FYLAKELVK-AGHEVTLFTRG 89 (378)
T ss_pred ccceEEEEeccCCCceeEh--HHHHHHHHH-CCCEEEEEecC
Confidence 345777761 24445443 467899999 99999998743
No 369
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=20.46 E-value=4.5e+02 Score=22.71 Aligned_cols=47 Identities=17% Similarity=-0.060 Sum_probs=27.2
Q ss_pred CCchhHHHhhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCC
Q 041323 241 VNPEKIIEWLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPP 295 (433)
Q Consensus 241 ~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~ 295 (433)
..++.+.+++++.+.. .++..|=... .++++.+++...++..+.|+.
T Consensus 16 ~~~~~~~~~~~~~~~d--~iih~GDi~~------~~~~~~l~~~~~~~~~V~GN~ 62 (178)
T cd07394 16 DLPAKFKKLLVPGKIQ--HVLCTGNLCS------KETYDYLKTIAPDVHIVRGDF 62 (178)
T ss_pred hhHHHHHHHhccCCCC--EEEECCCCCC------HHHHHHHHhhCCceEEEECCC
Confidence 3455788888763323 5666776543 334444444444666666654
No 370
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=20.45 E-value=3.2e+02 Score=26.47 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=27.5
Q ss_pred cEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCC
Q 041323 6 EHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTP 43 (433)
Q Consensus 6 ~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~ 43 (433)
++|.++-.++.|= +||+.|++ .||+|++-...
T Consensus 2 ~kI~ViGaGswGT-----ALA~~la~-ng~~V~lw~r~ 33 (329)
T COG0240 2 MKIAVIGAGSWGT-----ALAKVLAR-NGHEVRLWGRD 33 (329)
T ss_pred ceEEEEcCChHHH-----HHHHHHHh-cCCeeEEEecC
Confidence 5788888888884 89999999 99999998743
No 371
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=20.39 E-value=2.4e+02 Score=23.87 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=33.9
Q ss_pred EEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchh
Q 041323 8 TVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQ 47 (433)
Q Consensus 8 il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~ 47 (433)
+++.-.++.|-......||..+++ +|.+|.++..+.++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCCh
Confidence 567778999999999999999999 999999998766543
No 372
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=20.35 E-value=1.5e+02 Score=29.56 Aligned_cols=45 Identities=11% Similarity=0.184 Sum_probs=34.8
Q ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHhcCCcEEEEEeCCCchhhhhh
Q 041323 5 NEHTVMLPLMAHGHLIPFLALAKQIHRSTGFKITIANTPLNIQYLQN 51 (433)
Q Consensus 5 ~~~il~~~~~~~GHv~P~l~LA~~L~~~rGh~Vt~~~~~~~~~~~~~ 51 (433)
+.||++.-.|+.|= +-.+.|.+.|.+ .|++|.++.++.-.+.+..
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~-~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVR-QGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHh-CCCEEEEEECHhHHHHHHH
Confidence 34777776665554 668999999999 9999999998877666554
No 373
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=20.17 E-value=6.6e+02 Score=22.82 Aligned_cols=149 Identities=9% Similarity=-0.029 Sum_probs=73.0
Q ss_pred hhhcCCCCcEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEec
Q 041323 249 WLDLHHPGSVLYISFGSQNTISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRN 328 (433)
Q Consensus 249 ~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (433)
||+... +.|++|..|.+. ..=+..|.+.|.++.++...- -+.+..-.. ...+.+..
T Consensus 20 ~l~~~~-~~VLVVGGG~VA-------~RK~~~Ll~~gA~VtVVap~i--------------~~el~~l~~--~~~i~~~~ 75 (223)
T PRK05562 20 SLLSNK-IKVLIIGGGKAA-------FIKGKTFLKKGCYVYILSKKF--------------SKEFLDLKK--YGNLKLIK 75 (223)
T ss_pred EEECCC-CEEEEECCCHHH-------HHHHHHHHhCCCEEEEEcCCC--------------CHHHHHHHh--CCCEEEEe
Confidence 344433 457777666554 222355556788877765422 122221111 12232222
Q ss_pred ccChHHhhccCCcceEEecCCchhHHHHHh-----cCCceEecccccchhhHH-----HHHHHHhcceEEEccCCCCccc
Q 041323 329 WAPQLEILSHKSTGAFLSYCGWNSALESLS-----QGLPMIGWPIAAEQTYNS-----KMLVEEMGMAVELTRGVQSTIV 398 (433)
Q Consensus 329 ~~pq~~il~~~~v~~~ithgG~~s~~eal~-----~GvP~i~~P~~~dQ~~na-----~~~~~~~G~g~~l~~~~~~~~~ 398 (433)
---+..-|..+. ++|.--+-..+.+.++ .|+++.++ |++..+ ..+.+- ++=+.+..+.....-
T Consensus 76 r~~~~~dl~g~~--LViaATdD~~vN~~I~~~a~~~~~lvn~v----d~p~~~dFi~PAiv~rg-~l~IaIST~G~sP~l 148 (223)
T PRK05562 76 GNYDKEFIKDKH--LIVIATDDEKLNNKIRKHCDRLYKLYIDC----SDYKKGLCIIPYQRSTK-NFVFALNTKGGSPKT 148 (223)
T ss_pred CCCChHHhCCCc--EEEECCCCHHHHHHHHHHHHHcCCeEEEc----CCcccCeEEeeeEEecC-CEEEEEECCCcCcHH
Confidence 111222345555 5777777666666543 35555543 333222 223332 444555543333445
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 041323 399 GHDVKNVIEMVMDEAGKGQEMKAKAEKIGRQIR 431 (433)
Q Consensus 399 ~~~l~~ai~~vl~~~~~~~~~~~~a~~l~~~~~ 431 (433)
+..|++.|++++.+- ..+-+.+.++...++
T Consensus 149 ar~lR~~ie~~l~~~---~~l~~~l~~~R~~vk 178 (223)
T PRK05562 149 SVFIGEKVKNFLKKY---DDFIEYVTKIRNKAK 178 (223)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 677888888888322 245556666655554
No 374
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.13 E-value=1.5e+02 Score=27.55 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=52.8
Q ss_pred cEEEEEeCCCC---CCCHHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCccccccCCchhHHHHhhhcCCCeEEecc--cC
Q 041323 257 SVLYISFGSQN---TISSSQTMELAIGLEASAKSFLWVIRPPVGFDLRGEFRSERLPEGFEERIEETKQGLLVRNW--AP 331 (433)
Q Consensus 257 ~vv~vs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p 331 (433)
+.|.+..|+.. ..+.+.+.++++.+.+.++++++..+.. +. + .-+.+.+... ....+...+- +.
T Consensus 122 ~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~-------e~--~-~~~~i~~~~~-~~~~~~~~~~~~l~ 190 (279)
T cd03789 122 PVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPA-------ER--E-LAEEIAAALG-GPRVVNLAGKTSLR 190 (279)
T ss_pred CEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechh-------hH--H-HHHHHHHhcC-CCccccCcCCCCHH
Confidence 35666666653 3456788888888877777777653321 00 0 0011111110 0111111222 12
Q ss_pred -hHHhhccCCcceEEecCCchhHHHHHhcCCceEec
Q 041323 332 -QLEILSHKSTGAFLSYCGWNSALESLSQGLPMIGW 366 (433)
Q Consensus 332 -q~~il~~~~v~~~ithgG~~s~~eal~~GvP~i~~ 366 (433)
-..++.+++ ++|+.-. |.++=|.+.|+|+|++
T Consensus 191 e~~~li~~~~--l~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 191 ELAALLARAD--LVVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred HHHHHHHhCC--EEEeeCC-HHHHHHHHcCCCEEEE
Confidence 245778888 5888743 6677778999999976
No 375
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=20.11 E-value=1.3e+02 Score=27.36 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 041323 17 GHLIPFLALAKQIHRSTGFKITIANTPL 44 (433)
Q Consensus 17 GHv~P~l~LA~~L~~~rGh~Vt~~~~~~ 44 (433)
-|..-|-..|.+|.+ +||+|+++....
T Consensus 46 l~~saMRhfa~~L~~-~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 46 LFFSAMRHFADELRA-KGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHH-TT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCCC
Confidence 367789999999999 999999998763
No 376
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=20.01 E-value=1.6e+02 Score=26.99 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=28.9
Q ss_pred CCCcccHHHHHHHHHHHHhcC--CcEEEEEeCCCchhhhhh
Q 041323 13 LMAHGHLIPFLALAKQIHRST--GFKITIANTPLNIQYLQN 51 (433)
Q Consensus 13 ~~~~GHv~P~l~LA~~L~~~r--Gh~Vt~~~~~~~~~~~~~ 51 (433)
.|+.+=+.=.+.|.+.|.+ + |++|.++.++.-...+..
T Consensus 7 tGs~~~~~~~~~l~~~L~~-~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 7 TGAGHLLVESFQVMKELKR-EIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eCccHhHHHHHHHHHHHHh-hcCCCeEEEEEChhHHhHHhh
Confidence 3333334788999999999 9 999999998776665555
Done!