BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041325
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 109/247 (44%), Gaps = 63/247 (25%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK-------- 282
D T KIW + C + + H +++ + ++ + TGS+D+ ++VW
Sbjct: 152 DNTIKIWDKNTLEC-KRILTGH---TGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN 207
Query: 283 ----KLRAALQVNKKHSLVQTLEKHKS-AVTALALSTDGTVLYSGACDRSILVWERDQGN 337
A L + + ++ T K +S AV +A TD T+ R +LV R N
Sbjct: 208 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL-------RRVLVGHRAAVN 260
Query: 338 YIVDGDDD-----SGHMVLK----------GALRGHTKAILCLAVVSNLLFSGSSDNTIR 382
+VD DD SG +K L GH + I CL L+ SGSSDNTIR
Sbjct: 261 -VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 319
Query: 383 IWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDC 442
+W D + G +CL VLEGH V+C+ + N+ + SG+ D
Sbjct: 320 LW-------DIECG-ACLRVLEGHEELVRCIR------FDNKR---------IVSGAYDG 356
Query: 443 EIKIWQI 449
+IK+W +
Sbjct: 357 KIKVWDL 363
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 20/157 (12%)
Query: 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK-KLRAA 287
S DRT K+W TS + ++ N H I + + D V +GS+D I++W + A
Sbjct: 273 SGDRTIKVWNTSTCEFVRTL-NGHKRGIACL---QYRDRLVVSGSSDNTIRLWDIECGAC 328
Query: 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347
L+V LE H+ V + D + SGA D I VW+ +D +G
Sbjct: 329 LRV---------LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA---LDPRAPAG 374
Query: 348 HMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIW 384
+ L+ L H+ + L + S S D+TI IW
Sbjct: 375 TLCLR-TLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 410
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK 352
+HSL + + +++ L D + SG D +I +W+++ + K
Sbjct: 120 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNT-------------LECK 166
Query: 353 GALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL 403
L GHT ++LCL ++ +GSSD+T+R+W ++ + + C AVL
Sbjct: 167 RILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL 217
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288
S DRT +IW +C S+ + +D + + VS + ++ GS D ++VW
Sbjct: 184 SGDRTVRIWDLRTGQC--SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS-ETGF 240
Query: 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD-DDSG 347
V + S ++ HK +V ++ + DG + SG+ DRS+ +W N D +SG
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 348 HMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405
+ GH +L +A N + SGS D + W + S + L +L+G
Sbjct: 301 --TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--------NPLLMLQG 350
Query: 406 HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVY-SGSLDCEIKIWQIR 450
HR V + N + V+ +GS DC+ +IW+ +
Sbjct: 351 HRNSVISVAVA--------NGSSLGPEYNVFATGSGDCKARIWKYK 388
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 34/188 (18%)
Query: 264 SNDG-FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG 322
S DG F+ TG+ D I++W + +V L+ H+ + +L G L SG
Sbjct: 132 SPDGKFLATGAEDRLIRIWDI--------ENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 323 ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIR 382
+ DR++ +W D +G L ++ + + +GS D +R
Sbjct: 184 SGDRTVRIW-----------DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 232
Query: 383 IWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDC 442
+W D + G+ ++E + T DS YS + + V SGSLD
Sbjct: 233 VW-------DSETGF----LVERLDSENESGTGHKDSVYSVVFTRDGQS---VVSGSLDR 278
Query: 443 EIKIWQIR 450
+K+W ++
Sbjct: 279 SVKLWNLQ 286
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 81/230 (35%), Gaps = 42/230 (18%)
Query: 64 QCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVA 123
QCS TL ++ + + GK + GS + +R W+ + V D N
Sbjct: 198 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL-----DSENESG 252
Query: 124 TGNGDAVKSLVVL--GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPT 181
TG+ D+V S+V G + S D +++W + N A + K N
Sbjct: 253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN---ANNKSDSKTPNS---------- 299
Query: 182 LNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSD 241
C + T++ H D V S DR W
Sbjct: 300 -----GTC-------------EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 341
Query: 242 FRCLESVKNAHDDAINAIVVSKSNDGFVY----TGSADTKIKVWKKLRAA 287
L ++ + I+ V + S+ G Y TGS D K ++WK + A
Sbjct: 342 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 31/214 (14%)
Query: 238 RTSDFRCLESV-KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296
+ DF ++ + + AH AI + V + + + GS D+ + +W K +A + + L
Sbjct: 42 KYDDFTLIDVLDETAHKKAIRS-VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEM-DL 99
Query: 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356
+ +E H++ V +A S DG L + + D+S+ +WE D+ L+
Sbjct: 100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG---------EEYECISVLQ 150
Query: 357 GHTKAI--LCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLT 414
H++ + + LL S S D+T+RIW+ D+ + C+AVL GH V
Sbjct: 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWK------DYDDDWECVAVLNGHEGTVWS-- 202
Query: 415 AVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448
SD+ D + F + SGS D +++W+
Sbjct: 203 ----SDF-----DKTEGVFRLCSGSDDSTVRVWK 227
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 45 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 95
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 142
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 143 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 186
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 187 -----LIVSSSYDGLCRIW 200
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 110 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 160
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 161 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 219
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + DNT+++W D+ KG CL GH+
Sbjct: 220 SFVKFSPNGKYILAATL----------DNTLKLW-------DYSKG-KCLKTYTGHKNEK 261
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 262 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 291
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 172 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKY 230
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 231 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 282
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 283 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 329
Query: 382 RIWR 385
++W+
Sbjct: 330 KLWK 333
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 33/109 (30%)
Query: 348 HMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIW-----RRSSSVTDHQKGYSCL 400
+ LK L GHTKA+ + N L S S+D I+IW + +++ H+ G S +
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 95
Query: 401 AVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
A SS S L+ S S D +KIW +
Sbjct: 96 A--------------------------WSSDSNLLVSASDDKTLKIWDV 118
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 43 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 93
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 140
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 141 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 184
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 185 -----LIVSSSYDGLCRIW 198
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 158
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 159 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 218 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 259
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 260 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 289
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 170 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKY 228
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 229 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 280
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 281 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 327
Query: 382 RIWR 385
++W+
Sbjct: 328 KLWK 331
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 33/106 (31%)
Query: 351 LKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIW-----RRSSSVTDHQKGYSCLAVL 403
LK L GHTKA+ + N L S S+D I+IW + +++ H+ G S +A
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA-- 94
Query: 404 EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
SS S L+ S S D +KIW +
Sbjct: 95 ------------------------WSSDSNLLVSASDDKTLKIWDV 116
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 24 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 74
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 121
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 122 SNLIVSGSFDESVRIW-------DVKTGM-CLKTLPAHSDPVSAV-------HFNRDGS- 165
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 166 -----LIVSSSYDGLCRIW 179
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 139
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 140 -KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 199 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 240
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 241 YCIFA---------NFSVTGGKWIV-SGSEDNMVYIWNLQ 270
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKY 209
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 210 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 262 NMVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 308
Query: 382 RIWR 385
++W+
Sbjct: 309 KLWK 312
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 27 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 77
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 124
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 125 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 168
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 169 -----LIVSSSYDGLCRIW 182
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 142
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 143 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 202 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 243
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 244 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 273
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKY 212
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 213 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 265 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 311
Query: 382 RIWR 385
++W+
Sbjct: 312 KLWK 315
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 49/211 (23%)
Query: 237 WRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296
WR + + + +K HDD + + N + +GS D +KVW +
Sbjct: 103 WRRGELKSPKVLK-GHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTG--------KC 151
Query: 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356
++TL H V + + + ++ SG+ DR++ VW + G I L
Sbjct: 152 LRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECI-------------HTLY 196
Query: 357 GHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416
GHT + C+ + + SGS D T+R+W D + G CL VL GH V+C+
Sbjct: 197 GHTSTVRCMHLHEKRVVSGSRDATLRVW-------DIETG-QCLHVLMGHVAAVRCV--- 245
Query: 417 VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447
Y R V SG+ D +K+W
Sbjct: 246 ---QYDGRR---------VVSGAYDFMVKVW 264
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 96/223 (43%), Gaps = 53/223 (23%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D T ++W +CL V H A+ + + + V +G+ D +KVW
Sbjct: 218 DATLRVWDIETGQCLH-VLMGHVAAVRCV---QYDGRRVVSGAYDFMVKVWDP------- 266
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
+ + + TL+ H + V +L DG + SG+ D SI VW+ + GN I
Sbjct: 267 -ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI----------- 312
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG---HR 407
L GH + + N+L SG++D+T++IW D + G CL L+G H+
Sbjct: 313 --HTLTGHQSLTSGMELKDNILVSGNADSTVKIW-------DIKTG-QCLQTLQGPNKHQ 362
Query: 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
V CL N+N V + S D +K+W ++
Sbjct: 363 SAVTCLQF-------NKN--------FVITSSDDGTVKLWDLK 390
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 24 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 74
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 121
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 122 SNLIVSGSFDESVRIW-------DVKTGM-CLKTLPAHSDPVSAV-------HFNRDGS- 165
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 166 -----LIVSSSYDGLCRIW 179
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 139
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 140 -KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DN +++W D+ KG CL GH+
Sbjct: 199 SFVKFSPNGKYIL----------AATLDNDLKLW-------DYSKG-KCLKTYTGHKNEK 240
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 241 YCIFA---------NFSVTGGKWIV-SGSEDNMVYIWNLQ 270
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKY 209
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 210 ILAATLDNDLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 262 NMVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 308
Query: 382 RIWR 385
++W+
Sbjct: 309 KLWK 312
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 27 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 77
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 124
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 125 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 168
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 169 -----LIVSSSYDGLCRIW 182
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 142
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 143 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 202 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 243
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 244 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 273
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKY 212
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 213 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 265 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 311
Query: 382 RIWR 385
++W+
Sbjct: 312 KLWK 315
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 38 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 88
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 135
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 136 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 179
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 180 -----LIVSSSYDGLCRIW 193
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 103 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 153
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 154 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 212
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 213 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 254
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 255 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 284
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 165 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKY 223
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 224 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 275
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 276 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 322
Query: 382 RIWR 385
++W+
Sbjct: 323 KLWK 326
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 22 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 72
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 119
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 120 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 163
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 164 -----LIVSSSYDGLCRIW 177
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 87 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 137
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 138 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 196
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 197 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 238
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 239 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 268
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 149 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKY 207
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 208 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 259
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 260 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 306
Query: 382 RIWR 385
++W+
Sbjct: 307 KLWK 310
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 21 GHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 71
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 118
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 119 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 162
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 163 -----LIVSSSYDGLCRIW 176
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 136
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 137 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 196 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 237
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 238 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 267
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKY 206
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 207 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 259 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 305
Query: 382 RIWR 385
++W+
Sbjct: 306 KLWK 309
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 21 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 71
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 118
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 119 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 162
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 163 -----LIVSSSYDGLCRIW 176
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 136
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 137 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 196 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 237
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 238 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 267
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKY 206
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 207 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 259 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 305
Query: 382 RIWR 385
++W+
Sbjct: 306 KLWK 309
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 26 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 76
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 123
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 124 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 167
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 168 -----LIVSSSYDGLCRIW 181
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 91 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 141
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 142 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 200
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 201 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 242
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 243 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 272
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 153 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKY 211
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 212 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 263
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 264 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 310
Query: 382 RIWR 385
++W+
Sbjct: 311 KLWK 314
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 27 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 77
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 124
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 125 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 168
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 169 -----LIVSSSYDGLCRIW 182
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 142
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 143 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 202 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 243
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 244 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 273
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKY 212
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 213 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 265 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 311
Query: 382 RIWR 385
++W+
Sbjct: 312 KLWK 315
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 20 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 70
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 117
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 118 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 161
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 162 -----LIVSSSYDGLCRIW 175
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 85 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 135
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 136 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 194
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 195 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 236
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 237 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 266
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 147 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKY 205
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 206 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 257
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 258 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 304
Query: 382 RIWR 385
++W+
Sbjct: 305 KLWK 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 17 GHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 67
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 114
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 115 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 158
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 159 -----LIVSSSYDGLCRIW 172
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 82 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 132
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 133 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 191
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 192 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 233
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 234 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 263
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 144 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKY 202
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 203 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 254
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 255 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 301
Query: 382 RIWR 385
++W+
Sbjct: 302 KLWK 305
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 24 GHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 74
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 121
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 122 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 165
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 166 -----LIVSSSYDGLCRIW 179
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 139
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 140 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 199 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 240
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 241 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 270
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKY 209
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 210 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 262 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 308
Query: 382 RIWR 385
++++
Sbjct: 309 KLYK 312
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ + SAD IK+W + +T+ HK ++ +
Sbjct: 24 GHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 74
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 121
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 122 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 165
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 166 -----LIVSSSYDGLCRIW 179
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 139
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 140 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 199 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 240
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 241 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 270
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKY 209
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 210 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 262 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 308
Query: 382 RIWR 385
++++
Sbjct: 309 KLFK 312
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 45/199 (22%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H A++++ S N ++ SAD IK+W + +T+ HK ++ +
Sbjct: 24 GHTKAVSSVKFS-PNGEWLAASSADKLIKIWGAYDGKFE--------KTISGHKLGISDV 74
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV 368
A S+D +L S + D+++ +W+ G + L+GH+ + C
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCL-------------KTLKGHSNYVFCCNFNPQ 121
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
SNL+ SGS D ++RIW D + G CL L H PV + + NR+
Sbjct: 122 SNLIVSGSFDESVRIW-------DVKTG-KCLKTLPAHSDPVSAV-------HFNRDGS- 165
Query: 429 SSTSFLVYSGSLDCEIKIW 447
L+ S S D +IW
Sbjct: 166 -----LIVSSSYDGLCRIW 179
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T KIW S +CL+++K + +SN + +GS D +++W
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV------- 139
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
K ++TL H V+A+ + DG+++ S + D +W+ G + DD V
Sbjct: 140 -KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
+ K IL + + DNT+++W D+ KG CL GH+
Sbjct: 199 SFVKFSPNGKYIL----------AATLDNTLKLW-------DYSKG-KCLKTYTGHKNEK 240
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
C+ A N + ++V SGS D + IW ++
Sbjct: 241 YCIFA---------NFSVTGGKWIV-SGSEDNLVYIWNLQ 270
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V +S+D +IW T+ +CL+++ + + ++ + S N +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKY 209
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDGTVLYSGACD 325
+ + D +K+W K ++T HK+ + A T G + SG+ D
Sbjct: 210 ILAATLDNTLKLWDY--------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGS--SDNTI 381
+ +W Q IV L+GHT ++ A N++ S + +D TI
Sbjct: 262 NLVYIWNL-QTKEIVQ------------KLQGHTDVVISTACHPTENIIASAALENDKTI 308
Query: 382 RIWR 385
++W+
Sbjct: 309 KLWK 312
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 27/184 (14%)
Query: 231 DRTFKIWRTS--DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288
DR +IW T + C + H + + S + ++ + S D +WKK +
Sbjct: 37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN-YLASASFDATTCIWKKNQDDF 95
Query: 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGH 348
+ V TLE H++ V ++A + G +L + + D+S+ VWE D+ +D
Sbjct: 96 EC------VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE--------EDEYE 141
Query: 349 MVLKGALRGHTKAI--LCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH 406
V L HT+ + + LL S S D+T++++R + + + C A LEGH
Sbjct: 142 CV--SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR------EEEDDWVCCATLEGH 193
Query: 407 RRPV 410
V
Sbjct: 194 ESTV 197
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 119/292 (40%), Gaps = 25/292 (8%)
Query: 137 GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYV 196
G L S D +IR+W + ++ S + + ++A P N + F A +
Sbjct: 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 197 QVRRHK--KC--TWVHHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSD---FRCLESVK 249
+ +C T H + V S D++ +W + + C+ SV
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV-SVL 146
Query: 250 NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309
N+H + +V S + + + S D +K+++ + TLE H+S V +
Sbjct: 147 NSHTQDVKHVVWHPSQE-LLASASYDDTVKLYR------EEEDDWVCCATLEGHESTVWS 199
Query: 310 LALSTDGTVLYSGACDRSILVWER----DQGNYIVDGDDDSGHMVLKGALRG-HTKAILC 364
LA G L S + DR++ +W + ++ G D S + L G H++ I
Sbjct: 200 LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC--TLSGFHSRTIYD 257
Query: 365 LA--VVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL-EGHRRPVKCL 413
+A ++ L + D+ IR+++ + Q +S A L + H + V C+
Sbjct: 258 IAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 310 LALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369
LA + GT+L S DR I +W + ++I GH T + +
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ--------RTVRKVAWSPCG 73
Query: 370 NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVK 411
N L S S D T IW++ +Q + C+ LEGH VK
Sbjct: 74 NYLASASFDATTCIWKK------NQDDFECVTTLEGHENEVK 109
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 110/293 (37%), Gaps = 82/293 (27%)
Query: 209 HVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D+V S D T K+W F C+ ++ + HD ++++ + + D
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHI 207
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSI 328
V + S D IK+W+ +Q V+T H+ V + + DGT++ S + D+++
Sbjct: 208 V-SASRDKTIKMWE-----VQTG---YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258
Query: 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN------------------ 370
VW +V + K LR H + C++
Sbjct: 259 RVW-------VVATKE------CKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 371 ----LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV---------KCLTAVV 417
L SGS D TI++W S+ + CL L GH V K + +
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGM--------CLMTLVGHDNWVRGVLFHSGGKFILSCA 357
Query: 418 DS------DYSNRNS--------------DHSSTSFLVYSGSLDCEIKIWQIR 450
D DY N+ D T+ V +GS+D +K+W+ R
Sbjct: 358 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 36/153 (23%)
Query: 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359
L H+S VT + +V+ S + D +I VW+ + G++ + L+GHT
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-------------ERTLKGHT 150
Query: 360 KAILCLAV--VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVV 417
++ ++ LL S S+D TI++W D Q G+ C+ + GH V ++ +
Sbjct: 151 DSVQDISFDHSGKLLASCSADMTIKLW-------DFQ-GFECIRTMHGHDHNVSSVSIMP 202
Query: 418 DSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
+ D+ + S S D IK+W+++
Sbjct: 203 NGDH-------------IVSASRDKTIKMWEVQ 222
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 115/291 (39%), Gaps = 53/291 (18%)
Query: 68 TLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG 127
TLK +S S +GKLL S++ I+ W D + I + DH NV +
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLW--DFQGFECIRTMHGHDH-NVSSV--- 198
Query: 128 DAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGK------LKNKYYERIATLPT 181
S++ GD + SA +D I++W++ T + N+ IA+
Sbjct: 199 ----SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS- 253
Query: 182 LNDRFTKCFLANN---YVQVRRHKKCTWVHHVDTVXXXXXXXXXXXXXXT---------- 228
ND+ + ++ ++R H+ H V+ + T
Sbjct: 254 -NDQTVRVWVVATKECKAELREHR-----HVVECISWAPESSYSSISEATGSETKKSGKP 307
Query: 229 -------SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281
S D+T K+W S CL ++ HD+ + ++ S F+ + + D ++VW
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLF-HSGGKFILSCADDKTLRVW 365
Query: 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE 332
K ++TL H+ VT+L + +G+ D+++ VWE
Sbjct: 366 D--------YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 81/171 (47%), Gaps = 28/171 (16%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T K+W + + L+++ H ++ + S +D + + S D +K+W
Sbjct: 406 DKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSP-DDQTIASASDDKTVKLW--------- 453
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
N+ L+QTL H S+V +A S DG + S + D+++ +W R+ G ++
Sbjct: 454 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------------GQLL 501
Query: 351 LKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSC 399
L GH+ ++ +A + + S S D T+++W R+ + G+S
Sbjct: 502 Q--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 550
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 52/220 (23%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK-IKVWKKLRAALQ 289
D+T K+W + + L+++ H ++ + S DG ++D K +K+W
Sbjct: 324 DKTVKLWN-RNGQHLQTL-TGHSSSVWGVAFSP--DGQTIASASDDKTVKLW-------- 371
Query: 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHM 349
N+ L+QTL H S+V +A S DG + S + D+++ +W R+ G +
Sbjct: 372 -NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------------GQL 418
Query: 350 VLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR 407
+ L GH+ ++ +A + + S S D T+++W R+ + L L GH
Sbjct: 419 LQ--TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL---------LQTLTGHS 467
Query: 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447
V+ + D + S S D +K+W
Sbjct: 468 SSVRGVAFSPDGQT-------------IASASDDKTVKLW 494
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 30/172 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK-IKVWKKLRAALQ 289
D+T K+W + + L+++ H ++ + S DG ++D K +K+W
Sbjct: 37 DKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSP--DGQTIASASDDKTVKLW-------- 84
Query: 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHM 349
N+ L+QTL H S+V +A S DG + S + D+++ +W R+ G +
Sbjct: 85 -NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------------GQL 131
Query: 350 VLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSC 399
+ L GH+ ++ +A + + S S D T+++W R+ + G+S
Sbjct: 132 LQ--TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 181
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 30/157 (19%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK-IKVWKKLRAALQ 289
D+T K+W + + L+++ H ++ + S DG ++D K +K+W
Sbjct: 447 DKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSP--DGQTIASASDDKTVKLW-------- 494
Query: 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHM 349
N+ L+QTL H S+V +A S DG + S + D+++ +W R+ G +
Sbjct: 495 -NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------------GQL 541
Query: 350 VLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIW 384
+ L GH+ ++ +A + + S SSD T+++W
Sbjct: 542 LQ--TLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 30/172 (17%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK-IKVWKKLRAALQ 289
D+T K+W + + L+++ H ++ + S DG ++D K +K+W
Sbjct: 160 DKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSP--DGQTIASASDDKTVKLW-------- 207
Query: 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHM 349
N+ L+QTL H S+V +A S DG + S + D+++ +W R+ G +
Sbjct: 208 -NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------------GQL 254
Query: 350 VLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSC 399
+ L GH+ ++ +A + + S S D T+++W R+ + G+S
Sbjct: 255 LQ--TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 304
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 76/198 (38%), Gaps = 38/198 (19%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
AH D I +I V + +V +GS D +K+W +L QT E H+ V +
Sbjct: 95 AHPDYIRSIAVHPTKP-YVLSGSDDLTVKLW-------NWENNWALEQTFEGHEHFVMCV 146
Query: 311 ALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369
A + D + SG DR++ VW Q + G RG
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQST--------PNFTLTTGQERGVNYVDYYPLPDK 198
Query: 370 NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHS 429
+ + S D TI+IW D+Q SC+A LEGH V
Sbjct: 199 PYMITASDDLTIKIW-------DYQTK-SCVATLEGHMSNVSFAV-------------FH 237
Query: 430 STSFLVYSGSLDCEIKIW 447
T ++ SGS D +KIW
Sbjct: 238 PTLPIIISGSEDGTLKIW 255
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 60/162 (37%), Gaps = 50/162 (30%)
Query: 317 TVLYSGACD----------RSILVWERD--------QGNYIVDGDDD---------SGHM 349
T LYSG + RSI V E + N+I+ G DD +G
Sbjct: 30 TTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89
Query: 350 VLKGALRGHTKAILCLAV--VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR 407
V+ H I +AV + SGS D T+++W + + ++ EGH
Sbjct: 90 VVD--FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-------NWENNWALEQTFEGHE 140
Query: 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
V C+ N ST SG LD +K+W +
Sbjct: 141 HFVMCVAF---------NPKDPST---FASGCLDRTVKVWSL 170
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 76/198 (38%), Gaps = 38/198 (19%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
AH D I +I V + +V +GS D +K+W +L QT E H+ V +
Sbjct: 95 AHPDYIRSIAVHPTKP-YVLSGSDDLTVKLW-------NWENNWALEQTFEGHEHFVMCV 146
Query: 311 ALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369
A + D + SG DR++ VW Q + G RG
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQST--------PNFTLTTGQERGVNYVDYYPLPDK 198
Query: 370 NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHS 429
+ + S D TI+IW D+Q SC+A LEGH V
Sbjct: 199 PYMITASDDLTIKIW-------DYQTK-SCVATLEGHMSNVSFAV-------------FH 237
Query: 430 STSFLVYSGSLDCEIKIW 447
T ++ SGS D +KIW
Sbjct: 238 PTLPIIISGSEDGTLKIW 255
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 60/162 (37%), Gaps = 50/162 (30%)
Query: 317 TVLYSGACD----------RSILVWERD--------QGNYIVDGDDD---------SGHM 349
T LYSG + RSI V E + N+I+ G DD +G
Sbjct: 30 TTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89
Query: 350 VLKGALRGHTKAILCLAV--VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR 407
V+ H I +AV + SGS D T+++W + + ++ EGH
Sbjct: 90 VVD--FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-------NWENNWALEQTFEGHE 140
Query: 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
V C+ N ST SG LD +K+W +
Sbjct: 141 HFVMCVAF---------NPKDPST---FASGCLDRTVKVWSL 170
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 88/217 (40%), Gaps = 41/217 (18%)
Query: 234 FKIWRTSDFRCLESVKN--AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291
F+I R ++ E V + AH D I +I V + +V +GS D +K+W
Sbjct: 77 FRI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLW-------NWE 127
Query: 292 KKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
+L QT E H+ V +A + D + SG DR++ VW Q +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--------PNFTL 179
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410
G RG + + S D TI+IW D+Q SC+A LEGH V
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW-------DYQTK-SCVATLEGHMSNV 231
Query: 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447
AV H + ++ SGS D +KIW
Sbjct: 232 SF--AVF----------HPTLPIII-SGSEDGTLKIW 255
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 32/124 (25%)
Query: 337 NYIVDGDDD---------SGHMVLKGALRGHTKAILCLAV--VSNLLFSGSSDNTIRIWR 385
N+I+ G DD +G V+ H I +AV + SGS D T+++W
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW- 124
Query: 386 RSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445
+ + ++ EGH V C+ N ST SG LD +K
Sbjct: 125 ------NWENNWALEQTFEGHEHFVMCVAF---------NPKDPST---FASGCLDRTVK 166
Query: 446 IWQI 449
+W +
Sbjct: 167 VWSL 170
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 79/198 (39%), Gaps = 38/198 (19%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
AH D I +I V + +V +GS D +K+W +L QT E H+ V +
Sbjct: 95 AHPDYIRSIAVHPTKP-YVLSGSDDLTVKLW-------NWENNWALEQTFEGHEHFVMCV 146
Query: 311 ALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369
A + D + SG DR++ VW Q + G RG
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQST--------PNFTLTTGQERGVNYVDYYPLPDK 198
Query: 370 NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHS 429
+ + S D TI+IW D+Q SC+A LEGH V AV H
Sbjct: 199 PYMITASDDLTIKIW-------DYQTK-SCVATLEGHMSNVSF--AVF----------HP 238
Query: 430 STSFLVYSGSLDCEIKIW 447
+ ++ SGS D +KIW
Sbjct: 239 TLPIII-SGSEDGTLKIW 255
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 32/124 (25%)
Query: 337 NYIVDGDDD---------SGHMVLKGALRGHTKAILCLAV--VSNLLFSGSSDNTIRIWR 385
N+I+ G DD +G V+ H I +AV + SGS D T+++W
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW- 124
Query: 386 RSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445
+ + ++ EGH V C+ N ST SG LD +K
Sbjct: 125 ------NWENNWALEQTFEGHEHFVMCVAF---------NPKDPST---FASGCLDRTVK 166
Query: 446 IWQI 449
+W +
Sbjct: 167 VWSL 170
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 44/232 (18%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+ +++ + + + L + + HD + A+ ++ G + +GS D ++VW
Sbjct: 141 DKMIRVYDSINKKFLLQL-SGHDGGVWAL--KYAHGGILVSGSTDRTVRVWDI------- 190
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLY--SGACDRSILVWERDQGNYIVD-GDDDSG 347
KK E H S V L + + Y +G+ D ++ VW+ + + + D G++
Sbjct: 191 -KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 348 HMVLK---------GALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYS 398
+V G LRGH ++ ++ N++ SGS DNT+ +W +
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ--------MK 301
Query: 399 CLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
CL +L GH D YS DH + S S+D I+IW +
Sbjct: 302 CLYILSGH----------TDRIYSTI-YDHERKRCI--SASMDTTIRIWDLE 340
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 78/201 (38%), Gaps = 48/201 (23%)
Query: 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAI-VVSKSNDGFVYTGSADTKIKVWK--KLR 285
S DRT ++W C V H+ + + +V N ++ TGS D + VWK K
Sbjct: 180 STDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238
Query: 286 AALQVNKKHS-------------LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE 332
+ ++H V L H ++V + S G ++ SG+ D +++VW+
Sbjct: 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWD 296
Query: 333 RDQGN--YIVDGDDD---------------SGHM------------VLKGALRGHTKAIL 363
Q YI+ G D S M L L+GHT +
Sbjct: 297 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG 356
Query: 364 CLAVVSNLLFSGSSDNTIRIW 384
L + L S ++D +IR W
Sbjct: 357 LLRLSDKFLVSAAADGSIRGW 377
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288
S+D T +W + +CL + + H D I + + + + S DT I++W
Sbjct: 287 SYDNTLIVWDVAQMKCL-YILSGHTDRIYSTIYDHERKRCI-SASMDTTIRIWDL----- 339
Query: 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE 332
+ L+ TL+ H + V L LS L S A D SI W+
Sbjct: 340 ---ENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWD 378
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 47/133 (35%)
Query: 352 KGALRGH-TKAILCLAVVSNLLFSGSSDNTIRIW-------------------------- 384
+ LRGH T I CL N + +G+ D IR++
Sbjct: 114 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 173
Query: 385 --------RRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVY 436
R+ V D +KG C V EGH V+CL V ++ + ++V
Sbjct: 174 GILVSGSTDRTVRVWDIKKG-CCTHVFEGHNSTVRCLDIV----------EYKNIKYIV- 221
Query: 437 SGSLDCEIKIWQI 449
+GS D + +W++
Sbjct: 222 TGSRDNTLHVWKL 234
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 36/209 (17%)
Query: 244 CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ-TLEK 302
L+ AH D + AI N + + S D I +WK + +K + + Q L
Sbjct: 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKD----DKAYGVAQRRLTG 428
Query: 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362
H V + LS+DG SG+ D + +W+ G V GHTK +
Sbjct: 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG-------------VSTRRFVGHTKDV 475
Query: 363 LCLA--VVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420
L +A + + + S S D TI++W T + Y+ EGHR V C+
Sbjct: 476 LSVAFSLDNRQIVSASRDRTIKLWN-----TLGECKYTISEGGEGHRDWVSCV------- 523
Query: 421 YSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
R S ++ +V S S D +K+W +
Sbjct: 524 ---RFSPNTLQPTIV-SASWDKTVKVWNL 548
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/336 (22%), Positives = 128/336 (38%), Gaps = 46/336 (13%)
Query: 129 AVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLK--NKYYERIA-------TL 179
A+ + + D + SA +D I +WK+ + AY +L + + E + L
Sbjct: 387 AIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFAL 446
Query: 180 PTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRT 239
D + + V RR +V H V S DRT K+W T
Sbjct: 447 SGSWDGELRLWDLAAGVSTRR-----FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501
Query: 240 SDFRCLESVKNA---HDDAINAIVVSKSN-DGFVYTGSADTKIKVWKKLRAALQVNKKHS 295
C ++ H D ++ + S + + + S D +KVW L+
Sbjct: 502 LG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR------ 554
Query: 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355
TL H V+ +A+S DG++ SG D +L+W+ +G + + +S V+
Sbjct: 555 --STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS---VIHALC 609
Query: 356 RGHTKAILCLAVVSNLLFSGSSDNTIRIW--RRSSSVTDHQKGYSCLAVLEGHRRPVKCL 413
+ LC A +++ I+IW S V D + A + P
Sbjct: 610 FSPNRYWLCAA----------TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK 659
Query: 414 TAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
V+ N ++D S+ ++SG D I++W I
Sbjct: 660 RKVIYCTSLNWSADGST----LFSGYTDGVIRVWGI 691
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 349 MVLKGALRGHTKAILCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLA-VLE 404
+VLKG +R HT + +A ++++ S S D +I +W+ +T K Y L
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWK----LTKDDKAYGVAQRRLT 427
Query: 405 GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
GH V+ + D ++ SGS D E+++W +
Sbjct: 428 GHSHFVEDVVLSSDGQFA-------------LSGSWDGELRLWDL 459
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 121/328 (36%), Gaps = 70/328 (21%)
Query: 67 ATLKVKGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT 124
A ++ G+S ++ + ++ G+ GS +GE+R W+ T VG +V++
Sbjct: 422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS---TRRFVGHTKDVLSV 478
Query: 125 GNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLND 184
+ + ++ SA +D I++W S G+ + +
Sbjct: 479 -------AFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV-------- 523
Query: 185 RFTKCFLANNYVQVRRHKKCTWVHHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRC 244
RF+ L V SWD+T K+W S+ +
Sbjct: 524 RFSPNTLQPTIVS------------------------------ASWDKTVKVWNLSNCK- 552
Query: 245 LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304
L S H ++ + VS + +G D + +W L KK + +LE +
Sbjct: 553 LRSTLAGHTGYVSTVAVS-PDGSLCASGGKDGVVLLWD-----LAEGKK---LYSLEAN- 602
Query: 305 SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK----GALRGHTK 360
S + AL S + L A + I +W+ + + + D D K G K
Sbjct: 603 SVIHALCFSPNRYWL-CAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK 661
Query: 361 AILCLAVV----SNLLFSGSSDNTIRIW 384
I C ++ + LFSG +D IR+W
Sbjct: 662 VIYCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 44/232 (18%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+ +++ + + + L + + HD + A+ ++ G + +GS D ++VW
Sbjct: 141 DKXIRVYDSINKKFLLQL-SGHDGGVWAL--KYAHGGILVSGSTDRTVRVWDI------- 190
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLY--SGACDRSILVWERDQGNYIVD-GDDDSG 347
KK E H S V L + + Y +G+ D ++ VW+ + + + D G++
Sbjct: 191 -KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 348 HMVLK---------GALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYS 398
+V G LRGH ++ ++ N++ SGS DNT+ +W +
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQX--------K 301
Query: 399 CLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
CL +L GH D YS DH + S S D I+IW +
Sbjct: 302 CLYILSGH----------TDRIYSTI-YDHERKRCI--SASXDTTIRIWDLE 340
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 48/201 (23%)
Query: 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAI-VVSKSNDGFVYTGSADTKIKVWK--KLR 285
S DRT ++W C V H+ + + +V N ++ TGS D + VWK K
Sbjct: 180 STDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238
Query: 286 AALQVNKKHS-------------LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE 332
+ ++H V L H ++V + S G ++ SG+ D +++VW+
Sbjct: 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWD 296
Query: 333 RDQGN--YIVDGDDDSGHMV---------------------------LKGALRGHTKAIL 363
Q YI+ G D + L L+GHT +
Sbjct: 297 VAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVG 356
Query: 364 CLAVVSNLLFSGSSDNTIRIW 384
L + L S ++D +IR W
Sbjct: 357 LLRLSDKFLVSAAADGSIRGW 377
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288
S+D T +W + +CL + + H D I + + + + S DT I++W
Sbjct: 287 SYDNTLIVWDVAQXKCL-YILSGHTDRIYSTIYDHERKRCI-SASXDTTIRIWDL----- 339
Query: 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE 332
+ L TL+ H + V L LS L S A D SI W+
Sbjct: 340 ---ENGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWD 378
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 47/133 (35%)
Query: 352 KGALRGH-TKAILCLAVVSNLLFSGSSDNTIRIW-------------------------- 384
+ LRGH T I CL N + +G+ D IR++
Sbjct: 114 RTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG 173
Query: 385 --------RRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVY 436
R+ V D +KG C V EGH V+CL V ++ + ++V
Sbjct: 174 GILVSGSTDRTVRVWDIKKG-CCTHVFEGHNSTVRCLDIV----------EYKNIKYIV- 221
Query: 437 SGSLDCEIKIWQI 449
+GS D + +W++
Sbjct: 222 TGSRDNTLHVWKL 234
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 97/246 (39%), Gaps = 61/246 (24%)
Query: 239 TSDFRCLESVKNAHDDAINAIVVS---KSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295
T+ + L + AHDDAI ++ K N V TGS D +KVWK +++
Sbjct: 18 TNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWK------WRDERLD 71
Query: 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD------------ 343
L +LE H+ V ++ +S + S + D I +W+ + G I D
Sbjct: 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 131
Query: 344 DDSGHMVL-----------------KGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIW 384
DS ++ + +L K IL +A + L SG+ D I I+
Sbjct: 132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 191
Query: 385 RRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEI 444
++ L LEGH P++ LT DS L+ + S D I
Sbjct: 192 DIATG--------KLLHTLEGHAMPIRSLTFSPDSQ-------------LLVTASDDGYI 230
Query: 445 KIWQIR 450
KI+ ++
Sbjct: 231 KIYDVQ 236
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 25/159 (15%)
Query: 228 TSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287
+S D ++W + + ++S+ DA S ++ TG+ K+ ++
Sbjct: 98 SSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIF-----G 150
Query: 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347
++ KK +L+ + ++A S DG L SGA D I +++ G
Sbjct: 151 VESGKKE---YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK---------- 197
Query: 348 HMVLKGALRGHTKAI--LCLAVVSNLLFSGSSDNTIRIW 384
L L GH I L + S LL + S D I+I+
Sbjct: 198 ---LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 14/181 (7%)
Query: 231 DRTFKIW--RTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288
D+ IW R ++ +AH +N + + ++ + TGSAD + +W L
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
Query: 289 QVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQ-GNYIVDGDDDS 346
+ + + E HK + + S + T+L S DR + VW+ + G D +
Sbjct: 315 K-------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 367
Query: 347 GHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL 403
G L GHT I + N ++ S S DN +++W+ + +V + ++ + L
Sbjct: 368 GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASEL 427
Query: 404 E 404
E
Sbjct: 428 E 428
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 14/181 (7%)
Query: 231 DRTFKIW--RTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288
D+ IW R ++ +AH +N + + ++ + TGSAD + +W L
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
Query: 289 QVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQ-GNYIVDGDDDS 346
+ + + E HK + + S + T+L S DR + VW+ + G D +
Sbjct: 313 K-------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 365
Query: 347 GHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL 403
G L GHT I + N ++ S S DN +++W+ + +V + ++ + L
Sbjct: 366 GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASEL 425
Query: 404 E 404
E
Sbjct: 426 E 426
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 27/163 (16%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
D+T ++++ L +K AH+D + S ++D F+ T S D K+K+W +
Sbjct: 642 DKTLQVFKAETGEKLLEIK-AHEDEVLCCAFS-TDDRFIATCSVDKKVKIWNSMTG---- 695
Query: 291 NKKHSLVQTLEKHKSAVTALAL--STDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGH 348
LV T ++H V S+ +L +G+ D + +W+ +Q
Sbjct: 696 ----ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKE----------- 740
Query: 349 MVLKGALRGHTKAI-LC-LAVVSNLLFSGSSDNTIRIWRRSSS 389
+ + GHT ++ C + LL S S+D T+++W +S+
Sbjct: 741 --CRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 34/149 (22%)
Query: 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362
H AV S DG + S D+++ V++ + G +++ ++ H +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLE-------------IKAHEDEV 666
Query: 363 LCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420
LC A ++ + + S D ++IW + H + H V C
Sbjct: 667 LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVH--------TYDEHSEQVNC------CH 712
Query: 421 YSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
++N SS L+ +GS DC +K+W +
Sbjct: 713 FTN-----SSHHLLLATGSSDCFLKLWDL 736
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355
+ Q+ +HK V + + D L S + D I VW I L
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF--------------L 1046
Query: 356 RGHTKAILCLAVVSN-LLFSGSSDNTIRIW 384
RGH + + ++ N L S S D T+++W
Sbjct: 1047 RGHQETVKDFRLLKNSRLLSWSFDGTVKVW 1076
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 22/117 (18%)
Query: 229 SWDRTFKIW------RTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282
S+D T K+W + DF C H + + +S F T SAD K+W
Sbjct: 1068 SFDGTVKVWNIITGNKEKDFVC-------HQGTVLSCDISHDATKFSST-SADKTAKIWS 1119
Query: 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI 339
L +++ L H V A S D T+L +G + I +W G +
Sbjct: 1120 -FDLLLPLHE-------LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELL 1168
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 14/167 (8%)
Query: 231 DRTFKIW--RTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288
D+ IW R++ + +AH +N + + ++ + TGSAD + +W L
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 289 QVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQ-GNYIVDGDDDS 346
+ + T E HK + + S + T+L S DR + VW+ + G D +
Sbjct: 311 K-------LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 363
Query: 347 GHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSV 390
G L GHT I + N ++ S S DN ++IW+ + ++
Sbjct: 364 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENI 410
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 32/138 (23%)
Query: 319 LYSGACDRSILVWERDQG---NYIVDGDDDSGHMVLKGALRGHTKAILCLA---VVSNLL 372
L S + D ++ +W+ + G IVD K GH+ + +A + +L
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDA---------KAIFTGHSAVVEDVAWHLLHESLF 245
Query: 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432
S + D + IW S+ T +++ H V CL S + +
Sbjct: 246 GSVADDQKLMIWDTRSNTTSKPS-----HLVDAHTAEVNCL------------SFNPYSE 288
Query: 433 FLVYSGSLDCEIKIWQIR 450
F++ +GS D + +W +R
Sbjct: 289 FILATGSADKTVALWDLR 306
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 231 DRTFKIW--RTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288
D+ IW R ++ +AH +N + + ++ + TGSAD + +W L
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
Query: 289 QVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQ-GNYIVDGDDDS 346
+++ + E HK + + S + T+L S DR + VW+ + G D +
Sbjct: 317 KLH-------SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 369
Query: 347 GHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQK 395
G L GHT I + N ++ S S DN +++W+ + +V + ++
Sbjct: 370 GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEE 421
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 231 DRTFKIW--RTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288
D+ IW R++ + +AH +N + + ++ + TGSAD + +W L
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 289 QVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQ-GNYIVDGDDDS 346
+ + T E HK + + S + T+L S DR + VW+ + G D +
Sbjct: 311 K-------LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 363
Query: 347 GHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSV 390
G L GHT I + N ++ S S DN +IW+ + ++
Sbjct: 364 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAENI 410
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 32/138 (23%)
Query: 319 LYSGACDRSILVWERDQG---NYIVDGDDDSGHMVLKGALRGHTKAILCLA---VVSNLL 372
L S + D ++ +W+ + G IVD K GH+ + +A + +L
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDA---------KAIFTGHSAVVEDVAWHLLHESLF 245
Query: 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432
S + D + IW S+ T +++ H V CL S + +
Sbjct: 246 GSVADDQKLXIWDTRSNTTSKPS-----HLVDAHTAEVNCL------------SFNPYSE 288
Query: 433 FLVYSGSLDCEIKIWQIR 450
F++ +GS D + +W +R
Sbjct: 289 FILATGSADKTVALWDLR 306
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 111/287 (38%), Gaps = 56/287 (19%)
Query: 139 KLFSAHQDHKIRVWKIDNN--TSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYV 196
K+ S +D +R+W D+ + Y+ G L + Y+ L + T +
Sbjct: 31 KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFA 90
Query: 197 QVRRHKKCTWVHHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAI 256
T + H V SWD+T K+W+ L AH+ ++
Sbjct: 91 TSGEDPLYTLIGHQGNVCSLSFQDGVVISG--SWDKTAKVWKEGS---LVYNLQAHNASV 145
Query: 257 -NAIVVSKSNDGFVYTGSADTKIKVWKK--------------LRAALQVNKKH------- 294
+A VVS S + F+ T SAD IK+W+ +R V+ H
Sbjct: 146 WDAKVVSFSENKFL-TASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSND 204
Query: 295 -----------SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD 343
+++T E H+S V + L +G ++ G DR++ +W ++ G+
Sbjct: 205 GLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRTVRIWSKENGS------ 257
Query: 344 DDSGHMVLKGALRGHTKAILCLAVVSNL-LFSGSSDNTIRIWRRSSS 389
LK + +I + SN + GSSDN +RI+ + S
Sbjct: 258 -------LKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIFSQEKS 297
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 34/178 (19%)
Query: 265 NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV-TALALSTDGTVLYSGA 323
DG V +GS D KVW K+ SLV L+ H ++V A +S + +
Sbjct: 113 QDGVVISGSWDKTAKVW----------KEGSLVYNLQAHNASVWDAKVVSFSENKFLTAS 162
Query: 324 CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLF-SGSSDNTIR 382
D++I +W+ D+ V+K H + LAVV + F S S+D I+
Sbjct: 163 ADKTIKLWQNDK--------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIK 208
Query: 383 IWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440
+ D G L EGH V C+ + + D + D + + +GSL
Sbjct: 209 L-------VDXHTG-DVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL 258
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 231 DRTFKIW--RTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288
D+ IW R+++ +AH +N + + ++ + TGSAD + +W L
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 308
Query: 289 QVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQ-GNYIVDGDDDS 346
+++ + E HK + + S + T+L S DR + VW+ + G D +
Sbjct: 309 KLH-------SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAED 361
Query: 347 GHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSV 390
G L GHT I + N ++ S S DN +++W+ + ++
Sbjct: 362 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENI 408
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 18/142 (12%)
Query: 245 LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304
L H+ + I + + + S D I +WK R + L H
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ---RALRGHS 86
Query: 305 SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC 364
V+ + +S+DG SG+ D ++ +W+ G GHTK +L
Sbjct: 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTG-------------TTTRRFVGHTKDVLS 133
Query: 365 LAVVSN--LLFSGSSDNTIRIW 384
+A S+ + SGS D TI++W
Sbjct: 134 VAFSSDNRQIVSGSRDKTIKLW 155
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 23/218 (10%)
Query: 138 DKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197
D + SA +D I +WK+ + + Y L+ + + + + +F L+ ++
Sbjct: 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA---LSGSWDG 108
Query: 198 VRRHKKCT-------WVHHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKN 250
R T +V H V S D+T K+W T C +V++
Sbjct: 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQD 167
Query: 251 -AHDDAINAIVVSK-SNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308
+H + ++ + S S++ + + D +KVW L+ N H +
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI--------GHTGYLN 219
Query: 309 ALALSTDGTVLYSGACDRSILVWERDQGN--YIVDGDD 344
+ +S DG++ SG D ++W+ ++G Y +DG D
Sbjct: 220 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 257
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 254 DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK-KHSLVQTLEKHKSA-VTALA 311
D INA+ S + + + IK+W L + V++ K ++ T K + T+LA
Sbjct: 257 DIINALCFSPNR--YWLCAATGPSIKIWD-LEGKIIVDELKQEVISTSSKAEPPQCTSLA 313
Query: 312 LSTDGTVLYSGACDRSILVWE 332
S DG L++G D + VW+
Sbjct: 314 WSADGQTLFAGYTDNLVRVWQ 334
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 18/142 (12%)
Query: 245 LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304
L H+ + I + + + S D I +WK R + L H
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ---RALRGHS 63
Query: 305 SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC 364
V+ + +S+DG SG+ D ++ +W+ G GHTK +L
Sbjct: 64 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT-------------TTRRFVGHTKDVLS 110
Query: 365 LAVVSN--LLFSGSSDNTIRIW 384
+A S+ + SGS D TI++W
Sbjct: 111 VAFSSDNRQIVSGSRDKTIKLW 132
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 23/218 (10%)
Query: 138 DKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197
D + SA +D I +WK+ + + Y L+ + + + + +F L+ ++
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA---LSGSWDG 85
Query: 198 VRRHKKCT-------WVHHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKN 250
R T +V H V S D+T K+W T C +V++
Sbjct: 86 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQD 144
Query: 251 -AHDDAINAIVVSK-SNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308
+H + ++ + S S++ + + D +KVW L+ N H +
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI--------GHTGYLN 196
Query: 309 ALALSTDGTVLYSGACDRSILVWERDQGN--YIVDGDD 344
+ +S DG++ SG D ++W+ ++G Y +DG D
Sbjct: 197 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 234
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 254 DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK-KHSLVQTLEKHKSA-VTALA 311
D INA+ S + + + IK+W L + V++ K ++ T K + T+LA
Sbjct: 234 DIINALCFSPNR--YWLCAATGPSIKIWD-LEGKIIVDELKQEVISTSSKAEPPQCTSLA 290
Query: 312 LSTDGTVLYSGACDRSILVWE 332
S DG L++G D + VW+
Sbjct: 291 WSADGQTLFAGYTDNLVRVWQ 311
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H + I ND + +GS D + VW+ L + + ++ TLE H V +
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI-TLEGHTKRVGIV 137
Query: 311 AL-STDGTVLYSGACDRSILVWERDQGNYIV 340
A T VL S CD ILVW+ G ++
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVL 168
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 318 VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA---VVSNLLFS 374
V+ SG+ D +++VWE G ++ + V+ L GHTK + +A N+L S
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREP----VI--TLEGHTKRVGIVAWHPTAQNVLLS 149
Query: 375 GSSDNTIRIW 384
DN I +W
Sbjct: 150 AGCDNVILVW 159
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 35/173 (20%)
Query: 237 WRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296
W+T D+ L+ AH + + + + D + + S D +KVW + ++
Sbjct: 1039 WQTGDYVFLQ----AHQETVKDFRLLQ--DSRLLSWSFDGTVKVWNVITGRIE------- 1085
Query: 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356
+ H+ V + A+S+D T S + D++ +W D + + + L+
Sbjct: 1086 -RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-------------LK 1131
Query: 357 GHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSC--LAVLEG 405
GH + C A + LL +G + IRIW +V+D Q +SC ++V EG
Sbjct: 1132 GHNGCVRCSAFSLDGILLATGDDNGEIRIW----NVSDGQLLHSCAPISVEEG 1180
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362
HK AV + + DG L S + D I VW G+Y+ L+ H + +
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--------------LQAHQETV 1054
Query: 363 LCLAVVSN-LLFSGSSDNTIRIW 384
++ + L S S D T+++W
Sbjct: 1055 KDFRLLQDSRLLSWSFDGTVKVW 1077
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAI-VVSKSNDGFVYTGSADTKIKVWKKLRAA 287
S D+ KIW ++ + + + + H + +N +KSN + TGS D +K+W
Sbjct: 683 SADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW------ 735
Query: 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337
+N+K T+ H ++V S D +L S + D ++ +W+ N
Sbjct: 736 -DLNQKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 783
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 35/173 (20%)
Query: 237 WRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296
W+T D+ L+ AH + + + + D + + S D +KVW + ++
Sbjct: 1032 WQTGDYVFLQ----AHQETVKDFRLLQ--DSRLLSWSFDGTVKVWNVITGRIE------- 1078
Query: 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356
+ H+ V + A+S+D T S + D++ +W D + + + L+
Sbjct: 1079 -RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-------------LK 1124
Query: 357 GHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSC--LAVLEG 405
GH + C A + LL +G + IRIW +V+D Q +SC ++V EG
Sbjct: 1125 GHNGCVRCSAFSLDGILLATGDDNGEIRIW----NVSDGQLLHSCAPISVEEG 1173
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362
HK AV + + DG L S + D I VW G+Y+ L+ H + +
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--------------LQAHQETV 1047
Query: 363 LCLAVVSN-LLFSGSSDNTIRIW 384
++ + L S S D T+++W
Sbjct: 1048 KDFRLLQDSRLLSWSFDGTVKVW 1070
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAI-VVSKSNDGFVYTGSADTKIKVWKKLRAA 287
S D+ KIW ++ + + + + H + +N +KSN + TGS D +K+W
Sbjct: 676 SADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW------ 728
Query: 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337
+N+K T+ H ++V S D +L S + D ++ +W+ N
Sbjct: 729 -DLNQKECR-NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 30/162 (18%)
Query: 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288
SWD + ++W + +C H + ++ S N V +G D ++VW
Sbjct: 86 SWDHSLRLWNLQNGQCQYKFL-GHTKDVLSVAFSPDNRQIV-SGGRDNALRVW------- 136
Query: 289 QVNKKHSLVQTLEK--HKSAVTALALST--DGTVLYSGACDRSILVWERDQGNYIVDGDD 344
N K + TL + H V+ + S D V+ SG D + VW+ G + D
Sbjct: 137 --NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD--- 191
Query: 345 DSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIW 384
L+GHT + + V + L S D R+W
Sbjct: 192 ----------LKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359
LE H + V+ +ALS +G S + D S+ +W G + GHT
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQ-------------CQYKFLGHT 109
Query: 360 KAILCLAVVSN--LLFSGSSDNTIRIW 384
K +L +A + + SG DN +R+W
Sbjct: 110 KDVLSVAFSPDNRQIVSGGRDNALRVW 136
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 231 DRTFKIWRTSDFRCLESV-KNAHDDAINAIVVSKSNDG-FVYTGSADTKIKVWKKLRAAL 288
D ++W C+ ++ + AH D ++ + S S D + +G D +KVW L
Sbjct: 130 DNALRVWNVKG-ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD-----L 183
Query: 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI 339
+ LV L+ H + VT++ +S DG++ S D +W+ +G +
Sbjct: 184 ATGR---LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL 231
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 59/244 (24%)
Query: 137 GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYV 196
G+ SA DH +R+W + N Y K + ++ + ++R +N +
Sbjct: 79 GNFAVSASWDHSLRLWNLQNGQCQY-----KFLGHTKDVLSVAFSPDNRQIVSGGRDNAL 133
Query: 197 QVRRHK-KCTWVH------HVDTVXXXXXXXXXXXXXXTS--WDRTFKIWRTSDFRCLES 247
+V K +C +H H D V S WD K+W + R +
Sbjct: 134 RVWNVKGEC--MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD 191
Query: 248 VKNAHDDAINAIVVSKSNDGFVYTGS-ADTKIKVW--------KKLRAALQVNK------ 292
+K H + + ++ VS DG + S D ++W ++ A +N+
Sbjct: 192 LK-GHTNYVTSVTVSP--DGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPN 248
Query: 293 -------------------KHSLVQTLEKHKSA------VTALALSTDGTVLYSGACDRS 327
K +V+ +H+ + ++A S DG+ LYSG D
Sbjct: 249 RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNV 308
Query: 328 ILVW 331
I VW
Sbjct: 309 IRVW 312
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
DR +IW CL +V +AH + + + G A ++ +WK A
Sbjct: 311 DRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK-- 367
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331
V L+ H S V +L +S DG + S A D ++ +W
Sbjct: 368 ------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL- 355
V TL H V L + DG L SG D + VW G + G + L+
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG--------EGGWVPLQTFTQ 285
Query: 356 -RGHTKAILCLAVVSNLLFS--GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH 406
+G KA+ SN+L + G+SD IRIW S +CL+ ++ H
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--------ACLSAVDAH 331
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 45/129 (34%)
Query: 297 VQTLEKHKSAVTALA--------LSTDGTVLYSGACDRSILVWERDQGNYI--VDGDDD- 345
+QT +H+ AV A+A L+T G G DR I +W G + VD
Sbjct: 280 LQTFTQHQGAVKAVAWCPWQSNVLATGG-----GTSDRHIRIWNVCSGACLSAVDAHSQV 334
Query: 346 -------------SGH--------------MVLKGALRGHTKAILCLAVVSN--LLFSGS 376
SGH M L+GHT +L L + + + S +
Sbjct: 335 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 394
Query: 377 SDNTIRIWR 385
+D T+R+WR
Sbjct: 395 ADETLRLWR 403
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
DR +IW CL +V +AH + + + G A ++ +WK A
Sbjct: 300 DRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK-- 356
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331
V L+ H S V +L +S DG + S A D ++ +W
Sbjct: 357 ------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL- 355
V TL H V L + DG L SG D + VW G + G + L+
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG--------EGGWVPLQTFTQ 274
Query: 356 -RGHTKAILCLAVVSNLLFS--GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH 406
+G KA+ SN+L + G+SD IRIW S +CL+ ++ H
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--------ACLSAVDAH 320
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 45/129 (34%)
Query: 297 VQTLEKHKSAVTALA--------LSTDGTVLYSGACDRSILVWERDQGNYI--VDGDDD- 345
+QT +H+ AV A+A L+T G G DR I +W G + VD
Sbjct: 269 LQTFTQHQGAVKAVAWCPWQSNVLATGG-----GTSDRHIRIWNVCSGACLSAVDAHSQV 323
Query: 346 -------------SGH--------------MVLKGALRGHTKAILCLAVVSN--LLFSGS 376
SGH M L+GHT +L L + + + S +
Sbjct: 324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 383
Query: 377 SDNTIRIWR 385
+D T+R+WR
Sbjct: 384 ADETLRLWR 392
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 48/183 (26%)
Query: 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL------QVNKKHSLVQTLE 301
+ H I A+ S D + T SAD+++K+W RA+ Q N K S Q +E
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS--QAVE 238
Query: 302 K----HKSAVTALALSTDGTVLYSGACDRSILVWERDQGN-------------------- 337
H V L ++DG L + D + +W G
Sbjct: 239 SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT 298
Query: 338 ----------YIVDGDDDSGHMVLKGA----LRGHTKAILCLAVVSNL--LFSGSSDNTI 381
++ G + + V G L+GH K + C SN L+SGS D I
Sbjct: 299 VSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNI 358
Query: 382 RIW 384
W
Sbjct: 359 LAW 361
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
DR +IW CL +V +AH + + + G A ++ +WK A
Sbjct: 220 DRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK-- 276
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331
V L+ H S V +L +S DG + S A D ++ +W
Sbjct: 277 ------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL- 355
V TL H V L + DG L SG D + VW G + G + L+
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG--------EGGWVPLQTFTQ 194
Query: 356 -RGHTKAILCLAVVSNLLFS--GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR 408
+G KA+ SN+L + G+SD IRIW S +CL+ ++ H +
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--------ACLSAVDAHSQ 242
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 45/129 (34%)
Query: 297 VQTLEKHKSAVTALA--------LSTDGTVLYSGACDRSILVWERDQGNYI--VDGDDD- 345
+QT +H+ AV A+A L+T G G DR I +W G + VD
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGG-----GTSDRHIRIWNVCSGACLSAVDAHSQV 243
Query: 346 -------------SGH--------------MVLKGALRGHTKAILCLAVVSN--LLFSGS 376
SGH M L+GHT +L L + + + S +
Sbjct: 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 303
Query: 377 SDNTIRIWR 385
+D T+R+WR
Sbjct: 304 ADETLRLWR 312
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 52/197 (26%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVV---SKSNDGFVYTGSA--DTKIKVWKKLR 285
D+T K+W T +CL ++ H+D ++ + V K++D V SA D +K W +
Sbjct: 128 DKTIKVW-TIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE--RDQGNYIVDGD 343
++ + H S + L S DGT++ S D I++W + Y +
Sbjct: 186 FQIEAD--------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 344 D---------------------------DSGHMV--LKGALRGHTKAI------LCLAVV 368
D D ++V L+ G++KA L +
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 369 SNLLFSGSSDNTIRIWR 385
LF+G +DN IR+W+
Sbjct: 298 GQTLFAGYTDNVIRVWQ 314
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 32/163 (19%)
Query: 291 NKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHM 349
N+ L TLE H VT+LA S +L S + D++++ W+ + GDD +
Sbjct: 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWK-------LTGDDQKFGV 56
Query: 350 VLKGALRGHTKAI--LCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR 407
++ + +GH+ + L S S D T+R+W +A E ++
Sbjct: 57 PVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD--------------VATGETYQ 101
Query: 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
R V + V+ D + S ++ SGS D IK+W I+
Sbjct: 102 RFVGHKSDVMSVDIDKKAS-------MIISGSRDKTIKVWTIK 137
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 34/213 (15%)
Query: 239 TSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298
+++ L H+ + ++ S + + S D + WK L Q K V+
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWK-LTGDDQ--KFGVPVR 59
Query: 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358
+ + H V L+ DG S + D+++ +W+ G GH
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-------------QRFVGH 106
Query: 359 TKAILCLAV--VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416
++ + + ++++ SGS D TI++W KG CLA L GH V + V
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTI--------KG-QCLATLLGHNDWVSQVRVV 157
Query: 417 VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
N +D S + + S D +K W +
Sbjct: 158 -----PNEKADDDSVTII--SAGNDKMVKAWNL 183
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 52/197 (26%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVV---SKSNDGFVYTGSA--DTKIKVWKKLR 285
D+T K+W T +CL ++ H+D ++ + V K++D V SA D +K W +
Sbjct: 128 DKTIKVW-TIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE--RDQGNYIVDGD 343
++ + H S + L S DGT++ S D I++W + Y +
Sbjct: 186 FQIEAD--------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 344 D---------------------------DSGHMV--LKGALRGHTKAI------LCLAVV 368
D D ++V L+ G++KA L +
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 369 SNLLFSGSSDNTIRIWR 385
LF+G +DN IR+W+
Sbjct: 298 GQTLFAGYTDNVIRVWQ 314
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 32/163 (19%)
Query: 291 NKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHM 349
N+ L TLE H VT+LA S +L S + D++++ W+ + GDD +
Sbjct: 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWK-------LTGDDQKFGV 56
Query: 350 VLKGALRGHTKAI--LCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR 407
++ + +GH+ + L S S D T+R+W +A E ++
Sbjct: 57 PVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD--------------VATGETYQ 101
Query: 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
R V + V+ D + S ++ SGS D IK+W I+
Sbjct: 102 RFVGHKSDVMSVDIDKKAS-------MIISGSRDKTIKVWTIK 137
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 34/213 (15%)
Query: 239 TSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298
+++ L H+ + ++ S + + S D + WK L Q K V+
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWK-LTGDDQ--KFGVPVR 59
Query: 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358
+ + H V L+ DG S + D+++ +W+ G GH
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-------------QRFVGH 106
Query: 359 TKAILCLAV--VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416
++ + + ++++ SGS D TI++W KG CLA L GH V + V
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTI--------KG-QCLATLLGHNDWVSQVRVV 157
Query: 417 VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
N +D S + + S D +K W +
Sbjct: 158 -----PNEKADDDSVTII--SAGNDKMVKAWNL 183
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 52/197 (26%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVV---SKSNDGFVYTGSA--DTKIKVWKKLR 285
D+T K+W T +CL ++ H+D ++ + V K++D V SA D +K W +
Sbjct: 128 DKTIKVW-TIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE--RDQGNYIVDGD 343
++ + H S + L S DGT++ S D I++W + Y +
Sbjct: 186 FQIEAD--------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 344 D---------------------------DSGHMV--LKGALRGHTKAI------LCLAVV 368
D D ++V L+ G++KA L +
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 369 SNLLFSGSSDNTIRIWR 385
LF+G +DN IR+W+
Sbjct: 298 GQTLFAGYTDNVIRVWQ 314
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 32/163 (19%)
Query: 291 NKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHM 349
N+ L TLE H VT+LA S +L S + D++++ W+ + GDD +
Sbjct: 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWK-------LTGDDQKFGV 56
Query: 350 VLKGALRGHTKAI--LCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR 407
++ + +GH+ + L S S D T+R+W +A E ++
Sbjct: 57 PVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD--------------VATGETYQ 101
Query: 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
R V + V+ D + S ++ SGS D IK+W I+
Sbjct: 102 RFVGHKSDVMSVDIDKKAS-------MIISGSRDKTIKVWTIK 137
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 34/213 (15%)
Query: 239 TSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298
+++ L H+ + ++ S + + S D + WK L Q K V+
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWK-LTGDDQ--KFGVPVR 59
Query: 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358
+ + H V L+ DG S + D+++ +W+ G GH
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-------------QRFVGH 106
Query: 359 TKAILCLAV--VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416
++ + + ++++ SGS D TI++W KG CLA L GH V + V
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTI--------KG-QCLATLLGHNDWVSQVRVV 157
Query: 417 VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
N +D S + + S D +K W +
Sbjct: 158 -----PNEKADDDSVTII--SAGNDKMVKAWNL 183
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 52/197 (26%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVV---SKSNDGFVYTGSA--DTKIKVWKKLR 285
D+T K+W T +CL ++ H+D ++ + V K++D V SA D +K W +
Sbjct: 122 DKTIKVW-TIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 179
Query: 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE--RDQGNYIVDGD 343
++ + H S + L S DGT++ S D I++W + Y +
Sbjct: 180 FQIEAD--------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
Query: 344 D---------------------------DSGHMV--LKGALRGHTKAI------LCLAVV 368
D D ++V L+ G++KA L +
Sbjct: 232 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 291
Query: 369 SNLLFSGSSDNTIRIWR 385
LF+G +DN IR+W+
Sbjct: 292 GQTLFAGYTDNVIRVWQ 308
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 32/155 (20%)
Query: 299 TLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357
TLE H VT+LA S +L S + D++++ W+ + GDD + ++ + +G
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWK-------LTGDDQKFGVPVR-SFKG 57
Query: 358 HTKAI--LCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTA 415
H+ + L S S D T+R+W +A E ++R V +
Sbjct: 58 HSHIVQDCTLTADGAYALSASWDKTLRLWD--------------VATGETYQRFVGHKSD 103
Query: 416 VVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
V+ D + S ++ SGS D IK+W I+
Sbjct: 104 VMSVDIDKKAS-------MIISGSRDKTIKVWTIK 131
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 79/208 (37%), Gaps = 34/208 (16%)
Query: 244 CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303
L H+ + ++ S + + S D + WK L Q K V++ + H
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWK-LTGDDQ--KFGVPVRSFKGH 58
Query: 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363
V L+ DG S + D+++ +W+ G GH ++
Sbjct: 59 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-------------QRFVGHKSDVM 105
Query: 364 CLAV--VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421
+ + ++++ SGS D TI++W KG CLA L GH V + V
Sbjct: 106 SVDIDKKASMIISGSRDKTIKVWTI--------KG-QCLATLLGHNDWVSQVRVV----- 151
Query: 422 SNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
N +D S + + S D +K W +
Sbjct: 152 PNEKADDDSVTII--SAGNDKMVKAWNL 177
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 32/163 (19%)
Query: 291 NKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHM 349
N+ L TLE H VT+LA S +L S + D++++ W+ + GDD +
Sbjct: 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWK-------LTGDDQKFGV 56
Query: 350 VLKGALRGHTKAI--LCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR 407
++ + +GH+ + L S S D T+R+W +A E ++
Sbjct: 57 PVR-SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD--------------VATGETYQ 101
Query: 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
R V + V+ D + S ++ SGS D IK+W I+
Sbjct: 102 RFVGHKSDVMSVDIDKKAS-------MIISGSRDKTIKVWTIK 137
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 34/213 (15%)
Query: 239 TSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298
+++ L H+ + ++ S + + S D + WK L Q K V+
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWK-LTGDDQ--KFGVPVR 59
Query: 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358
+ + H V L+ DG S + D+++ +W+ G GH
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-------------QRFVGH 106
Query: 359 TKAILCLAV--VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416
++ + + ++++ SGS D TI++W KG CLA L GH V + V
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTI--------KG-QCLATLLGHNDWVSQVRVV 157
Query: 417 VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
N +D S + + S D +K W +
Sbjct: 158 -----PNEKADDDSVTII--SAGNDKMVKAWNL 183
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 52/197 (26%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVV---SKSNDGFVYTGSA--DTKIKVWKKLR 285
D+T K+W T +CL ++ H+D ++ + V K++D V SA D +K W +
Sbjct: 128 DKTIKVW-TIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE--RDQGNYIVDGD 343
++ + H S + L S DGT++ S D I++W + Y +
Sbjct: 186 FQIEAD--------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 344 D---------------------------DSGHMV--LKGALRGHTKAI------LCLAVV 368
D D ++V L+ G++ A L +
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSAD 297
Query: 369 SNLLFSGSSDNTIRIWR 385
LF+G +DN IR+W+
Sbjct: 298 GQTLFAGYTDNVIRVWQ 314
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H + I ND + +GS D + VW+ L + + ++ TLE H V +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI-TLEGHTKRVGIV 137
Query: 311 AL-STDGTVLYSGACDRSILVWERDQGNYIV 340
A T VL S D ILVW+ G ++
Sbjct: 138 AWHPTAQNVLLSAGXDNVILVWDVGTGAAVL 168
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 318 VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA---VVSNLLFS 374
V+ SG+ D +++VWE G ++ + V+ L GHTK + +A N+L S
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREP----VI--TLEGHTKRVGIVAWHPTAQNVLLS 149
Query: 375 GSSDNTIRIW 384
DN I +W
Sbjct: 150 AGXDNVILVW 159
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 52/197 (26%)
Query: 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVV---SKSNDGFVYTGSA--DTKIKVWKKLR 285
D+T K+W T +CL ++ H+D ++ + V K++D V SA D +K W +
Sbjct: 128 DKTIKVW-TIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ 185
Query: 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE--RDQGNYIVDGD 343
++ + H S + L S DGT++ S D I +W + Y +
Sbjct: 186 FQIEAD--------FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Query: 344 D---------------------------DSGHMV--LKGALRGHTKAI------LCLAVV 368
D D ++V L+ G++KA L +
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 369 SNLLFSGSSDNTIRIWR 385
LF+G +DN IR+W+
Sbjct: 298 GQTLFAGYTDNVIRVWQ 314
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 35/134 (26%)
Query: 349 MVLKGALRGHTKAILCLAVVS---NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405
+VL+G L GH + LA + NLL S S D T+ W+ + D QK + +G
Sbjct: 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTG---DDQKFGVPVRSFKG 63
Query: 406 HRRPVKCLTAVVDSDYS------------------------NRNSDHSSTSF-----LVY 436
H V+ T D Y+ SD S +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII 123
Query: 437 SGSLDCEIKIWQIR 450
SGS D IK+W I+
Sbjct: 124 SGSRDKTIKVWTIK 137
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 34/213 (15%)
Query: 239 TSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298
+++ L H+ + ++ S + + S D + WK L Q K V+
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWK-LTGDDQ--KFGVPVR 59
Query: 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358
+ + H V L+ DG S + D+++ +W+ G GH
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-------------QRFVGH 106
Query: 359 TKAILCLAV--VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416
+ + + ++ + SGS D TI++W KG CLA L GH V + V
Sbjct: 107 KSDVXSVDIDKKASXIISGSRDKTIKVWTI--------KG-QCLATLLGHNDWVSQVRVV 157
Query: 417 VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
N +D S + + S D +K W +
Sbjct: 158 -----PNEKADDDSVTII--SAGNDKXVKAWNL 183
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 41/161 (25%)
Query: 300 LEKHKSAVTALAL------STDGTVLYSGACDRSILVW---ERDQGNYIVDGDDDSGHMV 350
LE H VT++ + D VL SG+ D+++++W E +Q Y +
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF---------GI 67
Query: 351 LKGALRGHTKAILCLAVVSNLLFSGSS--DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR 408
AL GH + LA+ F+ SS D T+R+W + T + GH+
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR--------FVGHQS 119
Query: 409 PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
V + D NR + S + EIK+W I
Sbjct: 120 EVYSVAFSPD----NRQ---------ILSAGAEREIKLWNI 147
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE 332
D ++KVW N + T + H+S V L++S +G + +G D+ +L+W+
Sbjct: 193 DGRLKVW---------NTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 26/113 (23%)
Query: 348 HMVLKGALRGHTKAILCLAVV--------SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSC 399
+V +G L GH+ + + S +L SGS D T+ IW+ + Q GY
Sbjct: 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL---YEEEQNGYFG 66
Query: 400 LA--VLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
+ L GH V L S + S S D +++W +R
Sbjct: 67 IPHKALTGHNHFVSDLAL-------------SQENCFAISSSWDKTLRLWDLR 106
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359
L A ALA+S D V +S D +I VW D + L +GHT
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVW-------------DLHNQTLVRQFQGHT 183
Query: 360 KAILCLAVVSN--LLFSGSSDNTIRIW 384
C+ + ++ L++G DNT+R W
Sbjct: 184 DGASCIDISNDGTKLWTGGLDNTVRSW 210
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 270 YTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSIL 329
++ +D I VW +LV+ + H + + +S DGT L++G D ++
Sbjct: 157 FSCCSDGNIAVWDL--------HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208
Query: 330 VWERDQGNYIVDGD 343
W+ +G + D
Sbjct: 209 SWDLREGRQLQQHD 222
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 268 FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE-KHKSAVTALALSTDGTVLYSGACDR 326
++ G ++ VW L A + +N + TL+ H+ ++ L LS+DG+ L +G+ D+
Sbjct: 312 LLFAGYSNGDCYVWDTLLAEMVLN-----LGTLQNSHEGRISCLGLSSDGSALCTGSWDK 366
Query: 327 SILVW 331
++ +W
Sbjct: 367 NLKIW 371
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 298 QTLEKHKSAVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356
+ L HK ++ D T L +G+ D++ ++W+ G I +
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI--------SIFGSEFPS 202
Query: 357 GHTKAILCLAVVS---NLLFSGSSDNTIRIW 384
GHT +L L++ S N+ SGS D T+R+W
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 32/186 (17%)
Query: 268 FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS 327
++ + S D ++ VW AL K H++ + H V A + +G + G D +
Sbjct: 80 WIVSASQDGRLIVWN----ALTSQKTHAI----KLHCPWVMECAFAPNGQSVACGGLDSA 131
Query: 328 ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK-AILCLAVV--SNLLFSGSSDNTIRIW 384
++ N D D G+M + L GH A C V L +GS D T +W
Sbjct: 132 CSIF-----NLSSQADRD-GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185
Query: 385 RRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEI 444
VT Q+ + G P V+ ++ N++ + SGS D +
Sbjct: 186 ----DVTTGQR-----ISIFGSEFPSGHTADVLSLSINSLNAN------MFISGSCDTTV 230
Query: 445 KIWQIR 450
++W +R
Sbjct: 231 RLWDLR 236
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 23/122 (18%)
Query: 265 NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324
+D + T S DT +W + T H V +L+L+ D + SGAC
Sbjct: 153 DDNQIVTSSGDTTCALWDI--------ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204
Query: 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI--LCLAVVSNLLFSGSSDNTIR 382
D S +W+ +G + + GH I +C N +GS D T R
Sbjct: 205 DASAKLWDVREG-------------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 383 IW 384
++
Sbjct: 252 LF 253
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 246 ESVKNAHDDAINAIV-VSKSNDG-FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303
E + +HD+ I I VS S G + G D VW L+A L H
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--------DRAGVLAGH 311
Query: 304 KSAVTALALSTDGTVLYSGACDRSILVW 331
+ V+ L ++ DG + +G+ D + +W
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 23/122 (18%)
Query: 265 NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324
+D + T S DT +W + T H V +L+L+ D + SGAC
Sbjct: 153 DDNQIVTSSGDTTCALWDI--------ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204
Query: 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI--LCLAVVSNLLFSGSSDNTIR 382
D S +W+ +G + + GH I +C N +GS D T R
Sbjct: 205 DASAKLWDVREG-------------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 383 IW 384
++
Sbjct: 252 LF 253
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 246 ESVKNAHDDAINAIV-VSKSNDG-FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303
E + +HD+ I I VS S G + G D VW L+A L H
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--------DRAGVLAGH 311
Query: 304 KSAVTALALSTDGTVLYSGACDRSILVW 331
+ V+ L ++ DG + +G+ D + +W
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 23/122 (18%)
Query: 265 NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324
+D + T S DT +W + T H V +L+L+ D + SGAC
Sbjct: 153 DDNQIVTSSGDTTCALWDI--------ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204
Query: 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI--LCLAVVSNLLFSGSSDNTIR 382
D S +W+ +G + + GH I +C N +GS D T R
Sbjct: 205 DASAKLWDVREG-------------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 383 IW 384
++
Sbjct: 252 LF 253
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 246 ESVKNAHDDAINAIV-VSKSNDG-FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303
E + +HD+ I I VS S G + G D VW L+A L H
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--------DRAGVLAGH 311
Query: 304 KSAVTALALSTDGTVLYSGACDRSILVW 331
+ V+ L ++ DG + +G+ D + +W
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 23/122 (18%)
Query: 265 NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324
+D + T S DT +W + T H V +L+L+ D + SGAC
Sbjct: 153 DDNQIVTSSGDTTCALWDI--------ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204
Query: 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI--LCLAVVSNLLFSGSSDNTIR 382
D S +W+ +G + + GH I +C N +GS D T R
Sbjct: 205 DASAKLWDVREG-------------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 383 IW 384
++
Sbjct: 252 LF 253
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 246 ESVKNAHDDAINAIV-VSKSNDG-FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303
E + +HD+ I I VS S G + G D VW L+A L H
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--------DRAGVLAGH 311
Query: 304 KSAVTALALSTDGTVLYSGACDRSILVW 331
+ V+ L ++ DG + +G+ D + +W
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 86/220 (39%), Gaps = 40/220 (18%)
Query: 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINA-IVVSKSNDGFVYTGSADTKIKVWKKLRAA 287
S D T +W + L+S D + + S++ + FV +G D K VW
Sbjct: 173 SGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV-SGGCDKKAMVWDM---- 227
Query: 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347
+ VQ E H+S V ++ G SG+ D + + Y + D +
Sbjct: 228 ----RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL-------YDLRADREVA 276
Query: 348 HMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR 407
+ + G + L+ LLF+G +D TI +W D KG S +++L GH
Sbjct: 277 IYSKESIIFGASSVDFSLS--GRLLFAGYNDYTINVW-------DVLKG-SRVSILFGHE 326
Query: 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447
V L D T+F SGS D +++W
Sbjct: 327 NRVSTLRVSPD-----------GTAFC--SGSWDHTLRVW 353
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 23/122 (18%)
Query: 265 NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324
+D + T S DT +W + T H V +L+L+ D + SGAC
Sbjct: 164 DDNQIVTSSGDTTCALWDI--------ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 215
Query: 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI--LCLAVVSNLLFSGSSDNTIR 382
D S +W+ +G + + GH I +C N +GS D T R
Sbjct: 216 DASAKLWDVREG-------------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 262
Query: 383 IW 384
++
Sbjct: 263 LF 264
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 246 ESVKNAHDDAINAIV-VSKSNDG-FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303
E + +HD+ I I VS S G + G D VW L+A L H
Sbjct: 271 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--------DRAGVLAGH 322
Query: 304 KSAVTALALSTDGTVLYSGACDRSILVW 331
+ V+ L ++ DG + +G+ D + +W
Sbjct: 323 DNRVSCLGVTDDGMAVATGSWDSFLKIW 350
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 240 SDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299
S+F + AH I + S + + + S D ++K+W K S +T
Sbjct: 126 SNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSV--------KDGSNPRT 176
Query: 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI 339
L H++ VT +A+ G + S + D +I +WE G I
Sbjct: 177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360
+ H S +T L G L S + D + +W + DG + L GH
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWS------VKDGSNPR-------TLIGHRA 182
Query: 361 AILCLAVVS---NLLFSGSSDNTIRIWRRSSSVTDH 393
+ +A++ N+L S S D TIR+W + T H
Sbjct: 183 TVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIH 217
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 240 SDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299
S+F + AH I + S + + + S D ++K+W K S +T
Sbjct: 123 SNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSV--------KDGSNPRT 173
Query: 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI 339
L H++ VT +A+ G + S + D +I +WE G I
Sbjct: 174 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 213
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360
+ H S +T L G L S + D + +W + DG + L GH
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWS------VKDGSNPR-------TLIGHRA 179
Query: 361 AILCLAVVS---NLLFSGSSDNTIRIWRRSSSVTDH 393
+ +A++ N+L S S D TIR+W + T H
Sbjct: 180 TVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIH 214
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 20/145 (13%)
Query: 248 VKNAHDDAINAIVVSKSN--DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305
V ++ DD+I + S F+ GS ++ W+ + + K + H
Sbjct: 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM------HTG 87
Query: 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365
V + S DG+ +++ +CD++ +W+ I D+ K I +
Sbjct: 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAP-----------VKTIHWI 136
Query: 366 AVVS-NLLFSGSSDNTIRIWRRSSS 389
+ + + +GS D T++ W SS
Sbjct: 137 KAPNYSCVMTGSWDKTLKFWDTRSS 161
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 15/103 (14%)
Query: 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347
L H L H+ +T + + +G +L+S + D S VW G +
Sbjct: 16 LYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL-------- 67
Query: 348 HMVLKGALRGHTKAILCLAV--VSNLLFSGSSDNTIRIWRRSS 388
G L GHT I + V + +GS+D +I++W S+
Sbjct: 68 -----GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN 105
>pdb|3TH1|A Chain A, Crystal Structure Of Chlorocatechol 1,2-Dioxygenase From
Pseudomonas Putida
pdb|3TH1|B Chain B, Crystal Structure Of Chlorocatechol 1,2-Dioxygenase From
Pseudomonas Putida
pdb|3TH1|C Chain C, Crystal Structure Of Chlorocatechol 1,2-Dioxygenase From
Pseudomonas Putida
Length = 260
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 317 TVLYSGACDRSILVWERDQGNYIVDG------------DDDSGHMVLKGALRGHTKAILC 364
+ + G RS QG Y ++G DD ++++G +R T +L
Sbjct: 56 STIIEGKAQRSRTSAPAIQGPYFLEGAPVVEGVLKTYDTDDHKPLIIRGTVRSDTGELLA 115
Query: 365 LAVV------SNLLFSGSSDNTIRIWRRSSSVTDHQKGY 397
AV+ + L+SG DN + R VTD Q Y
Sbjct: 116 GAVIDVWHSTPDGLYSGIHDNIPVDYYRGKLVTDSQGNY 154
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307
+ NAH++ I+ V+ T S+D IK+++ + H L+ TL H+ V
Sbjct: 4 IANAHNELIHDAVLDYYGKRLA-TCSSDKTIKIFE------VEGETHKLIDTLTGHEGPV 56
Query: 308 TAL--ALSTDGTVLYSGACDRSILVWERDQGNY 338
+ A GT+L S + D +L+W+ + G +
Sbjct: 57 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 347 GHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDH 393
GH + + GH K I L V N L SGS D I W SS DH
Sbjct: 327 GHDEVLKTISGHNKGITALTV--NPLISGSYDGRIMEWSSSSMHQDH 371
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 268 FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS 327
V TGS DT I ++ V + +++ L HK V L T T++ SGA D
Sbjct: 555 LVATGSLDTNIFIYS-------VKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGA-DAC 606
Query: 328 ILVW 331
I W
Sbjct: 607 IKRW 610
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307
+ NAH++ I+ V+ T S+D IK+++ + H L+ TL H+ V
Sbjct: 6 IANAHNELIHDAVLDYYGKRLA-TCSSDKTIKIFE------VEGETHKLIDTLTGHEGPV 58
Query: 308 TAL--ALSTDGTVLYSGACDRSILVWERDQGNY 338
+ A GT+L S + D +L+W+ + G +
Sbjct: 59 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 91
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQD 146
LL S + +R WN + V I V H + V + + D +LG+K+ S D
Sbjct: 130 LLLSVSKDHALRLWNIQTDTLVAIFGG-VEGHRDEVLSADYD------LLGEKIMSCGMD 182
Query: 147 HKIRVWKIDN 156
H +++W+I++
Sbjct: 183 HSLKLWRINS 192
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQD 146
LL S + +R WN + V I V H + V + + D +LG+K+ S D
Sbjct: 129 LLLSVSKDHALRLWNIQTDTLVAIFGG-VEGHRDEVLSADYD------LLGEKIMSCGMD 181
Query: 147 HKIRVWKIDN 156
H +++W+I++
Sbjct: 182 HSLKLWRINS 191
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQD 146
LL S + +R WN + V I V H + V + + D +LG+K+ S D
Sbjct: 129 LLLSVSKDHALRLWNIQTDTLVAIFGG-VEGHRDEVLSADYD------LLGEKIMSCGMD 181
Query: 147 HKIRVWKIDN 156
H +++W+I++
Sbjct: 182 HSLKLWRINS 191
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 18/93 (19%)
Query: 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356
+ TL+ H S V LA +DG L SG D + +W D+ + K
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW-------------DARSSIPKFTKT 256
Query: 357 GHTKAILCLAVV---SNLLFS--GSSDNTIRIW 384
H A+ +A SNLL + G+ D I W
Sbjct: 257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 353 GALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQK 395
G L+GH+ + LA S+ L SG +DN ++IW SS+ K
Sbjct: 211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK 255
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQD 146
LL S + +R WN + V I V H + V + + D +LG+K+ S D
Sbjct: 125 LLLSVSKDHALRLWNIQTDTLVAIFGG-VEGHRDEVLSADYD------LLGEKIMSCGMD 177
Query: 147 HKIRVWKIDN 156
H +++W+I++
Sbjct: 178 HSLKLWRINS 187
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307
+ NAH++ I+ V+ T S+D IK+++ + H L+ TL H+ V
Sbjct: 4 IANAHNELIHDAVLDYYGKRLA-TCSSDKTIKIFE------VEGETHKLIDTLTGHEGPV 56
Query: 308 TAL--ALSTDGTVLYSGACDRSILVWERDQGNY 338
+ A GT+L S + D +L+W+ + G +
Sbjct: 57 WRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 269 VYTGSADTKIKVWKKL-RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS 327
+ S +++W+ L + +L VNK +H V L++ +DGT SG D S
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKY-----EHDDIVKTLSVFSDGTQAVSGGKDFS 162
Query: 328 ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIW 384
+ VW+ Q VLK + H+ + C+A + S D I +W
Sbjct: 163 VKVWDLSQ------------KAVLK-SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQD 146
LL S + +R WN + V I V H + V + + D +LG+K+ S D
Sbjct: 166 LLLSVSKDHALRLWNIQTDTLVAIFGG-VEGHRDEVLSADYD------LLGEKIMSCGMD 218
Query: 147 HKIRVWKIDN 156
H +++W+I++
Sbjct: 219 HSLKLWRINS 228
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307
+ NAH++ I+ V+ T S+D IK+++ + H L+ TL H+ V
Sbjct: 4 IANAHNEMIHDAVMDYYGKRMA-TCSSDKTIKIFE------VEGETHKLIDTLTGHEGPV 56
Query: 308 TAL--ALSTDGTVLYSGACDRSILVWERDQGNY 338
+ A GT+L S + D +++W+ + G +
Sbjct: 57 WRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 16/100 (16%)
Query: 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361
+H V+ +++ + GT SG+ D I VW D V+ + R H
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVW-------------DLAQQVVLSSYRAHAAQ 171
Query: 362 ILCLAVVS---NLLFSGSSDNTIRIWRRSSSVTDHQKGYS 398
+ C+A ++ S S DN I +W Q G S
Sbjct: 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS 211
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 53 FRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITS 112
F+ A +E CSA ++ + + + + G L+ S +G + W D N + ++
Sbjct: 63 FKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILV--ASDSGAVELWELDENETLIVSK 120
Query: 113 TDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKI 154
+H ++V+T S++ G + S +D I+VW +
Sbjct: 121 FCKYEHDDIVST------VSVLSSGTQAVSGSKDICIKVWDL 156
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 27/117 (23%)
Query: 229 SWDRTFKIWRTSDFRCLESVK---NAHDDAINAI-----VVSKSNDGFVYTGSADTKIKV 280
S D+T KIW + + +++ D + I +VS S +GF+
Sbjct: 258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF--------- 308
Query: 281 WKKLRAALQVNKK-HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQG 336
VN + S+ Q H A+TAL+ S DG L+S + I W+ G
Sbjct: 309 ---------VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV---SNLLFSGSSDNTI 381
D SIL+W+ N L+ +GH K IL L +LL S DNT+
Sbjct: 239 DPSILIWDLRNAN-----------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV 287
Query: 382 RIWRRSSS 389
+W S+
Sbjct: 288 LLWNPESA 295
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 262 SKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLY- 320
+K + FV TG AD +K+WK A + + L TLE H V +A S TVL
Sbjct: 167 TKESRKFV-TGGADNLVKIWKYNSDA----QTYVLESTLEGHSDWVRDVAWSP--TVLLR 219
Query: 321 ----SGACDRSILVWERD--QGNY 338
S + DR+ ++W +D QG +
Sbjct: 220 SYXASVSQDRTCIIWTQDNEQGPW 243
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 347 GHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDH 393
GH + + GH K I L V N L SGS D I W SS DH
Sbjct: 327 GHDEVLKTISGHNKGITALTV--NPLISGSYDGRIXEWSSSSXHQDH 371
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 268 FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS 327
V TGS DT I ++ V + +++ L HK V L T T++ SGA D
Sbjct: 555 LVATGSLDTNIFIYS-------VKRPXKIIKALNAHKDGVNNLLWETPSTLVSSGA-DAC 606
Query: 328 ILVW 331
I W
Sbjct: 607 IKRW 610
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 45/233 (19%), Positives = 82/233 (35%), Gaps = 77/233 (33%)
Query: 264 SNDG-FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG 322
S+DG + TG + ++++W NK +L+ L H++ + ++ + DGT + S
Sbjct: 117 SHDGNSIVTGVENGELRLW---------NKTGALLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 323 ACDRSILVWE------------RDQGNYIVDGDDDSGHMVL------------------- 351
+ ++W ++ G ++ ++ SG L
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG 227
Query: 352 ------------KGALRGHTKAILCLAV--VSNLLFSGSSDNTIRIWRRSSSVTDHQKGY 397
G L GH I L + LL S S D T+RIW H
Sbjct: 228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW--------HGGNG 279
Query: 398 SCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
+ GH + + + V D V S S+D +++W ++
Sbjct: 280 NSQNCFYGHSQSIVSASWVGDDK--------------VISCSMDGSVRLWSLK 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,579,356
Number of Sequences: 62578
Number of extensions: 465469
Number of successful extensions: 1916
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1244
Number of HSP's gapped (non-prelim): 420
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)